Query 048090
Match_columns 447
No_of_seqs 597 out of 2107
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 06:10:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048090.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048090hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 2.1E-69 4.6E-74 525.6 46.2 429 1-447 144-572 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 3E-67 6.5E-72 522.4 46.9 436 1-447 208-735 (857)
3 PLN03218 maturation of RBCL 1; 100.0 8E-65 1.7E-69 496.4 46.0 434 2-446 392-855 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 4.1E-64 9E-69 499.9 42.7 425 2-446 108-597 (857)
5 PLN03218 maturation of RBCL 1; 100.0 1.5E-63 3.2E-68 487.6 44.8 425 9-445 362-796 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 3.1E-57 6.7E-62 440.5 43.0 383 49-446 85-470 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-28 3.2E-33 250.4 44.5 398 17-434 465-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.9E-28 4.1E-33 249.6 44.8 395 17-431 499-899 (899)
9 KOG4626 O-linked N-acetylgluco 99.9 1.9E-24 4.1E-29 190.0 29.9 402 17-440 116-534 (966)
10 KOG4626 O-linked N-acetylgluco 99.9 8.8E-24 1.9E-28 185.9 27.8 367 52-439 117-490 (966)
11 TIGR00990 3a0801s09 mitochondr 99.9 1.2E-21 2.7E-26 188.7 42.1 363 55-432 131-571 (615)
12 PRK15174 Vi polysaccharide exp 99.9 2.7E-21 5.8E-26 185.7 41.5 353 35-403 20-386 (656)
13 PRK11447 cellulose synthase su 99.9 1.4E-21 2.9E-26 200.4 40.9 381 34-431 283-699 (1157)
14 PRK11447 cellulose synthase su 99.9 4.7E-21 1E-25 196.4 44.0 400 16-437 302-746 (1157)
15 PRK11788 tetratricopeptide rep 99.9 7.1E-22 1.5E-26 181.1 32.6 296 131-440 45-355 (389)
16 PRK11788 tetratricopeptide rep 99.9 1.6E-21 3.4E-26 178.8 32.9 297 61-397 45-346 (389)
17 PRK15174 Vi polysaccharide exp 99.9 9.9E-21 2.1E-25 181.8 38.5 331 87-432 43-381 (656)
18 PRK10049 pgaA outer membrane p 99.9 1.2E-20 2.6E-25 185.1 39.7 398 19-431 17-455 (765)
19 TIGR00990 3a0801s09 mitochondr 99.9 2E-19 4.4E-24 173.4 41.2 364 22-403 132-576 (615)
20 PRK09782 bacteriophage N4 rece 99.9 4.4E-18 9.6E-23 167.5 45.6 221 201-438 490-710 (987)
21 PRK14574 hmsH outer membrane p 99.9 5.2E-18 1.1E-22 163.7 43.3 390 34-431 48-512 (822)
22 PRK10049 pgaA outer membrane p 99.9 2.4E-18 5.3E-23 169.0 41.2 377 17-406 49-464 (765)
23 PRK14574 hmsH outer membrane p 99.8 1.3E-16 2.9E-21 154.0 42.7 371 57-438 40-483 (822)
24 PRK09782 bacteriophage N4 rece 99.8 7.3E-17 1.6E-21 159.0 41.6 388 19-432 315-740 (987)
25 KOG2002 TPR-containing nuclear 99.8 1.3E-15 2.9E-20 141.6 31.4 386 36-431 252-744 (1018)
26 KOG4422 Uncharacterized conser 99.8 1.8E-14 3.9E-19 122.4 35.1 251 42-323 198-459 (625)
27 PF13429 TPR_15: Tetratricopep 99.8 5.1E-18 1.1E-22 147.5 13.0 260 157-430 13-275 (280)
28 KOG2076 RNA polymerase III tra 99.8 1E-14 2.2E-19 134.9 34.0 336 86-430 139-510 (895)
29 KOG0495 HAT repeat protein [RN 99.8 5.8E-14 1.2E-18 125.5 37.1 366 60-442 415-790 (913)
30 KOG2002 TPR-containing nuclear 99.7 2.4E-14 5.1E-19 133.5 32.2 261 151-416 451-763 (1018)
31 KOG0547 Translocase of outer m 99.7 3.4E-14 7.3E-19 122.7 30.6 360 54-431 118-565 (606)
32 PRK10747 putative protoheme IX 99.7 2.1E-14 4.6E-19 130.5 30.4 282 134-431 97-389 (398)
33 KOG0495 HAT repeat protein [RN 99.7 2.8E-13 6E-18 121.2 35.6 372 51-444 516-890 (913)
34 KOG1126 DNA-binding cell divis 99.7 6.6E-15 1.4E-19 132.0 24.4 278 136-431 334-619 (638)
35 KOG2076 RNA polymerase III tra 99.7 3.1E-13 6.7E-18 125.3 35.8 364 61-431 149-554 (895)
36 KOG2003 TPR repeat-containing 99.7 1.8E-14 4E-19 123.4 25.6 206 200-418 503-709 (840)
37 KOG1155 Anaphase-promoting com 99.7 2.1E-13 4.6E-18 117.2 31.8 319 96-431 174-494 (559)
38 PF13429 TPR_15: Tetratricopep 99.7 2.4E-16 5.2E-21 137.0 14.4 258 126-397 13-276 (280)
39 KOG1126 DNA-binding cell divis 99.7 1.9E-15 4.2E-20 135.3 19.3 261 166-444 333-596 (638)
40 KOG1915 Cell cycle control pro 99.7 1E-12 2.3E-17 113.3 35.0 383 35-432 88-500 (677)
41 PRK10747 putative protoheme IX 99.7 1.4E-13 2.9E-18 125.3 31.1 284 99-399 97-391 (398)
42 TIGR00540 hemY_coli hemY prote 99.7 1.7E-13 3.6E-18 125.4 30.7 284 133-431 96-398 (409)
43 KOG4422 Uncharacterized conser 99.7 8.7E-13 1.9E-17 112.4 31.6 374 51-433 116-552 (625)
44 KOG1155 Anaphase-promoting com 99.7 6.3E-13 1.4E-17 114.3 30.8 357 49-430 162-534 (559)
45 TIGR00540 hemY_coli hemY prote 99.7 1.5E-13 3.3E-18 125.6 28.3 268 163-440 95-372 (409)
46 KOG1915 Cell cycle control pro 99.7 5.2E-12 1.1E-16 109.1 34.8 407 2-432 95-536 (677)
47 TIGR02521 type_IV_pilW type IV 99.6 4.1E-13 8.8E-18 113.9 25.3 202 223-431 30-231 (234)
48 KOG2003 TPR repeat-containing 99.6 2E-12 4.3E-17 111.1 28.8 374 57-445 282-701 (840)
49 COG2956 Predicted N-acetylgluc 99.6 2.8E-12 6.2E-17 105.4 27.1 298 52-362 37-347 (389)
50 COG3071 HemY Uncharacterized e 99.6 5.7E-12 1.2E-16 106.8 29.5 290 134-438 97-396 (400)
51 KOG1129 TPR repeat-containing 99.6 3.9E-13 8.4E-18 110.5 20.2 232 189-431 225-457 (478)
52 KOG1173 Anaphase-promoting com 99.6 1E-11 2.2E-16 109.7 30.2 274 151-438 243-522 (611)
53 COG3071 HemY Uncharacterized e 99.6 2.2E-11 4.8E-16 103.3 29.5 284 99-399 97-391 (400)
54 COG2956 Predicted N-acetylgluc 99.6 2E-11 4.3E-16 100.5 27.7 269 99-381 48-327 (389)
55 KOG1129 TPR repeat-containing 99.6 4.3E-13 9.2E-18 110.3 17.9 234 155-401 226-461 (478)
56 PRK12370 invasion protein regu 99.6 6E-12 1.3E-16 119.6 27.3 263 151-433 255-536 (553)
57 KOG0547 Translocase of outer m 99.5 5.4E-11 1.2E-15 103.3 30.1 350 33-399 128-567 (606)
58 KOG1173 Anaphase-promoting com 99.5 3.1E-11 6.8E-16 106.7 27.8 283 119-413 242-533 (611)
59 KOG1840 Kinesin light chain [C 99.5 3.4E-11 7.3E-16 109.3 28.8 245 186-430 198-477 (508)
60 KOG4162 Predicted calmodulin-b 99.5 3E-10 6.5E-15 104.2 32.7 404 12-431 318-782 (799)
61 TIGR02521 type_IV_pilW type IV 99.5 3E-11 6.5E-16 102.4 25.4 200 188-398 32-232 (234)
62 PRK12370 invasion protein regu 99.5 1.1E-11 2.5E-16 117.7 24.6 232 186-431 255-501 (553)
63 KOG1174 Anaphase-promoting com 99.5 1.3E-09 2.8E-14 93.0 32.8 296 100-410 210-512 (564)
64 KOG2047 mRNA splicing factor [ 99.4 5.1E-09 1.1E-13 94.3 35.5 126 52-181 139-277 (835)
65 COG3063 PilF Tfp pilus assembl 99.4 1.6E-11 3.5E-16 96.4 17.5 200 225-431 36-235 (250)
66 PF12569 NARP1: NMDA receptor- 99.4 5.1E-10 1.1E-14 103.0 27.9 263 160-436 12-295 (517)
67 COG3063 PilF Tfp pilus assembl 99.4 3.9E-10 8.4E-15 88.8 22.7 202 190-403 38-241 (250)
68 PF13041 PPR_2: PPR repeat fam 99.4 6.3E-13 1.4E-17 81.3 5.9 50 49-98 1-50 (50)
69 PRK11189 lipoprotein NlpI; Pro 99.4 3.3E-10 7.1E-15 98.8 24.9 235 164-413 38-281 (296)
70 PRK11189 lipoprotein NlpI; Pro 99.4 3.9E-10 8.5E-15 98.3 25.3 94 226-325 66-160 (296)
71 KOG1156 N-terminal acetyltrans 99.4 6.7E-09 1.4E-13 93.8 32.2 385 34-434 55-470 (700)
72 PF13041 PPR_2: PPR repeat fam 99.4 1.9E-12 4.2E-17 79.1 6.6 50 260-309 1-50 (50)
73 KOG4318 Bicoid mRNA stability 99.4 1.7E-10 3.6E-15 107.3 21.7 254 72-348 11-286 (1088)
74 KOG1125 TPR repeat-containing 99.4 8E-11 1.7E-15 104.6 18.6 224 197-431 295-526 (579)
75 KOG1840 Kinesin light chain [C 99.4 1.9E-10 4.2E-15 104.5 21.6 244 154-397 201-478 (508)
76 KOG4318 Bicoid mRNA stability 99.4 2.1E-09 4.6E-14 100.2 27.6 213 1-238 11-285 (1088)
77 PF12569 NARP1: NMDA receptor- 99.3 2.9E-09 6.2E-14 98.2 28.3 292 59-361 12-333 (517)
78 KOG0624 dsRNA-activated protei 99.3 8.5E-09 1.8E-13 86.0 26.5 293 127-431 44-369 (504)
79 KOG1174 Anaphase-promoting com 99.3 6.5E-08 1.4E-12 82.9 31.5 268 149-431 229-499 (564)
80 KOG0548 Molecular co-chaperone 99.3 6.6E-09 1.4E-13 91.9 26.2 369 34-431 16-454 (539)
81 KOG2376 Signal recognition par 99.3 8.7E-08 1.9E-12 85.9 32.5 397 21-428 13-516 (652)
82 PF04733 Coatomer_E: Coatomer 99.3 1.2E-09 2.7E-14 93.7 19.5 253 129-403 9-270 (290)
83 KOG3785 Uncharacterized conser 99.2 4.6E-08 1E-12 82.1 27.0 164 59-234 65-229 (557)
84 cd05804 StaR_like StaR_like; a 99.2 8.3E-08 1.8E-12 87.0 31.3 91 194-289 121-213 (355)
85 KOG0624 dsRNA-activated protei 99.2 7.8E-08 1.7E-12 80.4 27.4 315 54-405 41-377 (504)
86 KOG4162 Predicted calmodulin-b 99.2 1.9E-07 4.2E-12 86.3 32.4 103 336-442 653-757 (799)
87 PF04733 Coatomer_E: Coatomer 99.2 3.4E-09 7.4E-14 91.0 18.6 250 160-431 9-264 (290)
88 cd05804 StaR_like StaR_like; a 99.2 2.3E-07 5E-12 84.1 31.7 301 123-432 8-336 (355)
89 KOG2047 mRNA splicing factor [ 99.2 1.9E-07 4E-12 84.6 29.5 375 51-439 102-585 (835)
90 KOG1156 N-terminal acetyltrans 99.2 4.8E-07 1E-11 82.1 31.9 399 18-432 9-434 (700)
91 KOG1914 mRNA cleavage and poly 99.1 3.9E-06 8.3E-11 74.9 35.6 129 299-431 368-500 (656)
92 KOG1070 rRNA processing protei 99.1 2E-08 4.4E-13 98.1 23.0 208 223-436 1457-1667(1710)
93 PRK04841 transcriptional regul 99.1 4.2E-07 9E-12 93.2 34.3 337 97-433 385-761 (903)
94 PRK10370 formate-dependent nit 99.1 2E-08 4.4E-13 81.5 19.4 119 310-432 52-173 (198)
95 PLN02789 farnesyltranstransfer 99.1 1.5E-07 3.2E-12 82.1 25.5 230 200-443 50-311 (320)
96 PRK15359 type III secretion sy 99.1 2.8E-09 6.1E-14 81.9 12.7 122 283-413 14-136 (144)
97 TIGR03302 OM_YfiO outer membra 99.1 4.7E-08 1E-12 82.8 20.6 186 221-432 30-232 (235)
98 KOG4340 Uncharacterized conser 99.1 6E-07 1.3E-11 73.9 25.4 395 22-438 15-449 (459)
99 KOG3617 WD40 and TPR repeat-co 99.1 8E-07 1.7E-11 82.9 28.8 360 14-426 723-1168(1416)
100 KOG2376 Signal recognition par 99.1 5.5E-06 1.2E-10 74.7 33.1 361 58-432 19-487 (652)
101 PRK15359 type III secretion sy 99.1 1.3E-08 2.8E-13 78.1 14.8 117 317-442 13-129 (144)
102 KOG1125 TPR repeat-containing 99.1 3.6E-08 7.8E-13 88.1 19.3 254 161-425 294-564 (579)
103 PRK15179 Vi polysaccharide bio 99.0 7.5E-08 1.6E-12 92.4 22.5 146 258-410 82-229 (694)
104 KOG1128 Uncharacterized conser 99.0 5E-07 1.1E-11 83.2 26.3 241 117-381 394-635 (777)
105 PRK04841 transcriptional regul 99.0 2.3E-06 4.9E-11 87.8 34.3 379 19-401 343-763 (903)
106 KOG1914 mRNA cleavage and poly 99.0 1.6E-05 3.5E-10 71.0 34.0 128 15-148 18-164 (656)
107 KOG1127 TPR repeat-containing 99.0 4.2E-07 9E-12 86.4 24.0 400 2-428 478-909 (1238)
108 KOG1128 Uncharacterized conser 99.0 4.4E-08 9.5E-13 89.9 17.2 196 220-431 394-615 (777)
109 COG5010 TadD Flp pilus assembl 99.0 2.2E-07 4.8E-12 75.2 19.3 161 261-427 66-226 (257)
110 KOG1070 rRNA processing protei 99.0 5.4E-07 1.2E-11 88.6 25.5 227 185-425 1456-1693(1710)
111 PLN02789 farnesyltranstransfer 98.9 6.6E-07 1.4E-11 78.1 22.9 189 234-431 47-249 (320)
112 KOG3785 Uncharacterized conser 98.9 5.2E-06 1.1E-10 70.2 26.4 373 33-436 70-494 (557)
113 TIGR03302 OM_YfiO outer membra 98.9 4.4E-07 9.6E-12 76.9 20.6 188 185-400 31-234 (235)
114 KOG0548 Molecular co-chaperone 98.9 4.1E-06 8.8E-11 74.7 26.6 383 8-415 28-472 (539)
115 PRK10370 formate-dependent nit 98.9 4.2E-07 9.2E-12 73.8 19.2 156 231-407 23-182 (198)
116 KOG3060 Uncharacterized conser 98.9 2.3E-06 5E-11 68.9 22.2 200 201-409 26-231 (289)
117 TIGR02552 LcrH_SycD type III s 98.9 5.3E-08 1.2E-12 74.5 12.7 94 336-431 20-113 (135)
118 KOG4340 Uncharacterized conser 98.9 1E-06 2.2E-11 72.5 20.2 293 54-359 13-336 (459)
119 KOG0985 Vesicle coat protein c 98.9 2.3E-05 4.9E-10 75.2 31.3 317 49-415 982-1325(1666)
120 KOG3616 Selective LIM binding 98.9 2.7E-06 5.8E-11 78.7 24.4 169 193-393 738-906 (1636)
121 PRK15179 Vi polysaccharide bio 98.8 3E-06 6.4E-11 81.7 25.4 131 296-431 85-216 (694)
122 KOG3081 Vesicle coat complex C 98.8 1.1E-05 2.4E-10 65.6 23.7 249 133-403 20-276 (299)
123 PRK14720 transcript cleavage f 98.8 1.4E-06 3.1E-11 84.7 22.3 235 149-414 28-268 (906)
124 KOG3617 WD40 and TPR repeat-co 98.8 1.2E-05 2.7E-10 75.3 26.2 343 47-431 722-1108(1416)
125 KOG0985 Vesicle coat protein c 98.8 6.9E-05 1.5E-09 72.1 31.5 138 261-423 1103-1240(1666)
126 KOG1127 TPR repeat-containing 98.8 3.4E-06 7.4E-11 80.5 22.4 360 67-440 474-885 (1238)
127 PRK14720 transcript cleavage f 98.8 1.6E-05 3.5E-10 77.6 27.2 237 86-380 31-268 (906)
128 COG5010 TadD Flp pilus assembl 98.7 1.7E-06 3.6E-11 70.2 17.2 137 294-434 63-199 (257)
129 PRK15363 pathogenicity island 98.7 2.8E-07 6.1E-12 69.5 12.0 96 334-431 36-131 (157)
130 KOG3060 Uncharacterized conser 98.7 6.4E-06 1.4E-10 66.4 20.0 189 238-432 26-220 (289)
131 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 7.8E-07 1.7E-11 79.2 16.5 126 298-430 170-295 (395)
132 COG4783 Putative Zn-dependent 98.7 1.8E-05 3.8E-10 70.1 24.3 137 271-431 315-453 (484)
133 PF12854 PPR_1: PPR repeat 98.7 1.7E-08 3.7E-13 55.2 3.6 32 116-147 2-33 (34)
134 KOG3081 Vesicle coat complex C 98.7 1.4E-05 3.1E-10 65.0 21.4 251 159-431 15-270 (299)
135 PF12854 PPR_1: PPR repeat 98.7 2.2E-08 4.8E-13 54.8 4.0 32 328-359 2-33 (34)
136 KOG2053 Mitochondrial inherita 98.7 0.00035 7.6E-09 66.6 34.2 391 35-441 24-511 (932)
137 COG4783 Putative Zn-dependent 98.7 6.2E-06 1.3E-10 72.9 20.3 129 298-431 308-436 (484)
138 TIGR02552 LcrH_SycD type III s 98.7 1.1E-06 2.4E-11 67.1 14.2 117 284-406 5-122 (135)
139 KOG3616 Selective LIM binding 98.6 6.9E-05 1.5E-09 69.7 24.7 293 60-400 715-1026(1636)
140 KOG0553 TPR repeat-containing 98.6 4.5E-07 9.8E-12 74.9 9.0 110 306-420 90-200 (304)
141 cd00189 TPR Tetratricopeptide 98.5 1.9E-06 4E-11 61.2 11.0 94 336-431 3-96 (100)
142 KOG0553 TPR repeat-containing 98.5 1.6E-06 3.6E-11 71.7 11.0 150 269-431 88-244 (304)
143 PF09976 TPR_21: Tetratricopep 98.5 1.1E-05 2.3E-10 62.4 15.2 125 300-428 15-143 (145)
144 PF12895 Apc3: Anaphase-promot 98.5 4.3E-07 9.3E-12 62.6 6.5 80 346-428 2-83 (84)
145 PLN03088 SGT1, suppressor of 98.5 1.7E-06 3.8E-11 77.4 11.6 106 303-413 8-114 (356)
146 TIGR02795 tol_pal_ybgF tol-pal 98.5 5E-06 1.1E-10 61.9 12.3 103 300-404 5-111 (119)
147 TIGR02795 tol_pal_ybgF tol-pal 98.4 1.2E-05 2.7E-10 59.8 13.4 96 335-432 4-105 (119)
148 PF13432 TPR_16: Tetratricopep 98.4 1.9E-06 4.2E-11 56.0 7.3 60 341-402 5-64 (65)
149 TIGR00756 PPR pentatricopeptid 98.4 7.8E-07 1.7E-11 49.6 4.2 35 52-86 1-35 (35)
150 PLN03088 SGT1, suppressor of 98.4 1.5E-05 3.3E-10 71.4 14.5 102 268-375 8-110 (356)
151 COG4235 Cytochrome c biogenesi 98.4 2.5E-05 5.5E-10 65.3 14.5 107 330-438 153-262 (287)
152 PF13812 PPR_3: Pentatricopept 98.3 8.5E-07 1.8E-11 49.0 4.1 33 52-84 2-34 (34)
153 PF09976 TPR_21: Tetratricopep 98.3 3.7E-05 8.1E-10 59.3 14.7 128 264-396 14-145 (145)
154 PRK02603 photosystem I assembl 98.3 5.4E-05 1.2E-09 60.4 14.9 101 300-402 38-153 (172)
155 PF13414 TPR_11: TPR repeat; P 98.3 4.4E-06 9.6E-11 55.1 7.2 64 368-431 2-66 (69)
156 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3.5E-05 7.6E-10 68.8 14.9 118 127-248 175-292 (395)
157 PF13414 TPR_11: TPR repeat; P 98.3 4.4E-06 9.6E-11 55.1 7.0 67 332-400 2-69 (69)
158 PRK02603 photosystem I assembl 98.3 3.7E-05 8.1E-10 61.3 13.7 99 333-431 35-148 (172)
159 PRK10153 DNA-binding transcrip 98.3 6.9E-05 1.5E-09 70.2 16.9 134 294-431 334-481 (517)
160 PF13432 TPR_16: Tetratricopep 98.3 4.7E-06 1E-10 54.2 6.7 58 374-431 2-59 (65)
161 CHL00033 ycf3 photosystem I as 98.2 2.4E-05 5.2E-10 62.2 11.9 116 314-429 16-139 (168)
162 PF14559 TPR_19: Tetratricopep 98.2 3.6E-06 7.9E-11 55.3 6.0 63 345-409 3-65 (68)
163 TIGR00756 PPR pentatricopeptid 98.2 2.7E-06 5.8E-11 47.3 4.4 33 264-296 2-34 (35)
164 PF05843 Suf: Suppressor of fo 98.2 3E-05 6.5E-10 67.0 12.9 136 263-403 2-141 (280)
165 cd00189 TPR Tetratricopeptide 98.2 2.4E-05 5.2E-10 55.3 10.7 97 300-400 3-99 (100)
166 PF12895 Apc3: Anaphase-promot 98.2 4.3E-06 9.2E-11 57.6 5.7 82 310-394 2-83 (84)
167 PF13812 PPR_3: Pentatricopept 98.2 3.8E-06 8.2E-11 46.3 4.3 33 263-295 2-34 (34)
168 COG4700 Uncharacterized protei 98.2 0.0011 2.4E-08 51.2 18.3 132 293-426 85-216 (251)
169 KOG2053 Mitochondrial inherita 98.1 0.0096 2.1E-07 57.3 30.6 225 60-292 18-256 (932)
170 PRK15363 pathogenicity island 98.1 7.3E-05 1.6E-09 56.7 11.5 97 298-399 36-133 (157)
171 KOG0550 Molecular chaperone (D 98.1 0.00021 4.6E-09 62.1 15.3 159 270-436 177-354 (486)
172 PF14938 SNAP: Soluble NSF att 98.1 0.00031 6.8E-09 61.0 16.9 179 234-414 45-246 (282)
173 PF10037 MRP-S27: Mitochondria 98.1 8.7E-05 1.9E-09 66.7 13.2 126 182-310 61-186 (429)
174 PF05843 Suf: Suppressor of fo 98.1 0.00028 6.1E-09 61.0 15.7 134 225-363 2-137 (280)
175 PRK10866 outer membrane biogen 98.1 0.004 8.6E-08 52.5 22.1 177 229-430 37-239 (243)
176 PRK10153 DNA-binding transcrip 98.0 0.0004 8.6E-09 65.2 17.3 143 257-404 332-488 (517)
177 PRK15331 chaperone protein Sic 98.0 6.9E-05 1.5E-09 57.1 10.0 85 309-397 49-133 (165)
178 CHL00033 ycf3 photosystem I as 98.0 0.0002 4.4E-09 56.9 13.4 104 297-402 35-153 (168)
179 PRK10866 outer membrane biogen 98.0 0.006 1.3E-07 51.4 23.6 196 151-359 31-238 (243)
180 PF13371 TPR_9: Tetratricopept 98.0 4.1E-05 8.9E-10 51.1 7.8 64 341-406 3-66 (73)
181 PF14559 TPR_19: Tetratricopep 98.0 4.9E-06 1.1E-10 54.7 3.1 53 380-432 2-54 (68)
182 PF01535 PPR: PPR repeat; Int 98.0 9.3E-06 2E-10 43.6 3.5 31 52-82 1-31 (31)
183 PF08579 RPM2: Mitochondrial r 98.0 8E-05 1.7E-09 52.3 8.7 79 55-133 29-116 (120)
184 PF12688 TPR_5: Tetratrico pep 98.0 0.00025 5.4E-09 51.9 11.6 87 341-427 9-99 (120)
185 KOG0550 Molecular chaperone (D 98.0 0.0078 1.7E-07 52.7 22.0 172 197-379 179-367 (486)
186 PF10037 MRP-S27: Mitochondria 98.0 0.00015 3.3E-09 65.2 12.2 136 209-346 50-186 (429)
187 PRK10803 tol-pal system protei 97.9 0.00022 4.7E-09 60.5 12.3 101 300-403 146-251 (263)
188 PF08579 RPM2: Mitochondrial r 97.9 0.0003 6.5E-09 49.5 10.6 79 266-345 29-116 (120)
189 KOG0543 FKBP-type peptidyl-pro 97.9 0.00019 4.1E-09 62.5 11.9 96 334-431 258-354 (397)
190 PF14938 SNAP: Soluble NSF att 97.9 0.0036 7.8E-08 54.4 20.2 134 265-401 117-266 (282)
191 COG3898 Uncharacterized membra 97.9 0.012 2.5E-07 51.3 30.1 296 124-437 85-397 (531)
192 PF01535 PPR: PPR repeat; Int 97.9 2.3E-05 5E-10 42.0 3.5 29 264-292 2-30 (31)
193 PF13371 TPR_9: Tetratricopept 97.8 7.2E-05 1.6E-09 49.9 6.4 58 376-433 2-59 (73)
194 PF13525 YfiO: Outer membrane 97.8 0.01 2.2E-07 48.7 20.1 51 373-423 145-198 (203)
195 KOG1130 Predicted G-alpha GTPa 97.8 0.00027 5.9E-09 61.4 11.0 135 298-432 196-344 (639)
196 COG4235 Cytochrome c biogenesi 97.8 0.0016 3.4E-08 54.8 14.4 107 294-404 153-262 (287)
197 COG4700 Uncharacterized protei 97.8 0.0063 1.4E-07 47.2 16.2 136 258-396 85-220 (251)
198 KOG2041 WD40 repeat protein [G 97.7 0.04 8.7E-07 51.8 25.7 131 36-178 679-822 (1189)
199 PRK10803 tol-pal system protei 97.7 0.00085 1.9E-08 57.0 12.6 94 336-431 146-245 (263)
200 KOG2280 Vacuolar assembly/sort 97.7 0.05 1.1E-06 51.6 26.7 331 55-425 441-792 (829)
201 KOG1538 Uncharacterized conser 97.7 0.013 2.9E-07 54.3 19.9 93 49-146 554-657 (1081)
202 PF13281 DUF4071: Domain of un 97.7 0.025 5.5E-07 50.2 21.2 172 229-403 146-339 (374)
203 PLN03098 LPA1 LOW PSII ACCUMUL 97.7 0.00023 5.1E-09 63.5 8.7 100 332-436 74-178 (453)
204 PF03704 BTAD: Bacterial trans 97.7 0.00099 2.2E-08 51.5 11.3 70 371-440 64-138 (146)
205 KOG2796 Uncharacterized conser 97.6 0.011 2.4E-07 48.6 16.7 136 263-401 178-318 (366)
206 PF07079 DUF1347: Protein of u 97.6 0.042 9.2E-07 49.0 30.9 382 34-429 20-521 (549)
207 PF12688 TPR_5: Tetratrico pep 97.6 0.003 6.6E-08 46.2 12.5 58 269-326 8-67 (120)
208 KOG2796 Uncharacterized conser 97.6 0.023 5.1E-07 46.8 18.1 153 278-440 165-321 (366)
209 PF13525 YfiO: Outer membrane 97.6 0.03 6.5E-07 46.0 19.7 45 340-386 148-195 (203)
210 PF06239 ECSIT: Evolutionarily 97.6 0.00058 1.2E-08 54.5 8.4 99 38-136 32-153 (228)
211 PRK11906 transcriptional regul 97.6 0.0031 6.6E-08 56.7 13.8 160 263-428 252-432 (458)
212 PF13431 TPR_17: Tetratricopep 97.5 9.6E-05 2.1E-09 40.3 2.8 32 392-423 2-33 (34)
213 KOG2041 WD40 repeat protein [G 97.5 0.042 9.2E-07 51.7 20.9 51 152-211 852-902 (1189)
214 PF04840 Vps16_C: Vps16, C-ter 97.5 0.063 1.4E-06 47.2 26.0 108 297-425 177-284 (319)
215 PF13428 TPR_14: Tetratricopep 97.5 0.00028 6E-09 41.3 4.5 41 371-411 3-43 (44)
216 PF13424 TPR_12: Tetratricopep 97.4 0.00023 5E-09 48.1 4.3 63 369-431 5-74 (78)
217 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.0026 5.5E-08 57.1 11.0 65 295-362 73-141 (453)
218 KOG4555 TPR repeat-containing 97.3 0.0054 1.2E-07 44.4 9.9 88 343-432 53-144 (175)
219 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.12 2.5E-06 46.3 32.5 399 14-431 39-530 (660)
220 PRK15331 chaperone protein Sic 97.3 0.014 3E-07 44.8 12.7 90 340-431 44-133 (165)
221 PF06239 ECSIT: Evolutionarily 97.3 0.0067 1.5E-07 48.6 11.4 36 277-312 118-153 (228)
222 PF03704 BTAD: Bacterial trans 97.2 0.033 7.2E-07 42.9 14.9 57 228-288 66-122 (146)
223 KOG2280 Vacuolar assembly/sort 97.2 0.19 4.1E-06 48.0 21.5 107 228-357 688-794 (829)
224 PF13512 TPR_18: Tetratricopep 97.2 0.022 4.7E-07 42.7 12.6 56 308-363 21-77 (142)
225 KOG1130 Predicted G-alpha GTPa 97.2 0.011 2.3E-07 51.9 12.3 136 226-361 197-343 (639)
226 PF13424 TPR_12: Tetratricopep 97.1 0.0017 3.7E-08 43.8 6.0 65 334-398 6-75 (78)
227 PF04840 Vps16_C: Vps16, C-ter 97.1 0.17 3.6E-06 44.6 26.4 79 269-358 184-262 (319)
228 KOG2610 Uncharacterized conser 97.1 0.024 5.3E-07 48.4 13.4 159 274-437 115-281 (491)
229 PF07079 DUF1347: Protein of u 97.1 0.19 4.2E-06 45.0 27.9 362 17-395 46-521 (549)
230 COG3898 Uncharacterized membra 97.1 0.17 3.8E-06 44.4 27.3 282 98-397 96-391 (531)
231 KOG0543 FKBP-type peptidyl-pro 97.1 0.0038 8.3E-08 54.7 8.9 66 371-438 259-324 (397)
232 KOG1585 Protein required for f 97.1 0.12 2.7E-06 42.2 17.3 85 339-424 156-248 (308)
233 PF13281 DUF4071: Domain of un 97.1 0.21 4.5E-06 44.6 20.4 167 262-432 141-334 (374)
234 PF12921 ATP13: Mitochondrial 97.1 0.0099 2.2E-07 44.0 9.7 53 292-344 47-99 (126)
235 COG1729 Uncharacterized protei 97.0 0.013 2.8E-07 48.8 10.8 106 299-405 144-251 (262)
236 KOG1941 Acetylcholine receptor 96.9 0.071 1.5E-06 46.2 14.9 129 301-429 126-272 (518)
237 KOG1941 Acetylcholine receptor 96.9 0.11 2.4E-06 45.1 15.4 232 164-397 18-274 (518)
238 COG4105 ComL DNA uptake lipopr 96.9 0.21 4.5E-06 41.5 19.7 65 188-253 36-100 (254)
239 PF10300 DUF3808: Protein of u 96.9 0.13 2.9E-06 48.1 17.6 164 265-431 191-375 (468)
240 PF13428 TPR_14: Tetratricopep 96.8 0.0043 9.3E-08 36.2 5.2 42 334-377 2-43 (44)
241 COG3118 Thioredoxin domain-con 96.8 0.25 5.5E-06 41.8 17.6 143 234-384 144-287 (304)
242 KOG4234 TPR repeat-containing 96.8 0.045 9.8E-07 43.2 11.4 102 307-412 105-211 (271)
243 COG0457 NrfG FOG: TPR repeat [ 96.7 0.29 6.3E-06 40.9 28.0 86 343-430 177-263 (291)
244 PRK11906 transcriptional regul 96.7 0.21 4.6E-06 45.3 16.8 119 240-363 274-402 (458)
245 PF09205 DUF1955: Domain of un 96.7 0.15 3.2E-06 37.4 13.8 140 273-435 13-152 (161)
246 COG5107 RNA14 Pre-mRNA 3'-end 96.6 0.48 1E-05 42.6 28.1 373 41-429 30-492 (660)
247 KOG1538 Uncharacterized conser 96.6 0.32 6.9E-06 45.7 17.1 80 54-145 601-682 (1081)
248 PF10300 DUF3808: Protein of u 96.5 0.26 5.6E-06 46.3 17.2 88 201-291 247-334 (468)
249 COG4105 ComL DNA uptake lipopr 96.5 0.38 8.1E-06 40.0 20.4 176 231-428 41-229 (254)
250 COG1729 Uncharacterized protei 96.5 0.13 2.8E-06 43.1 13.3 104 264-370 144-250 (262)
251 KOG2610 Uncharacterized conser 96.5 0.43 9.2E-06 41.2 16.2 118 165-287 116-234 (491)
252 COG3118 Thioredoxin domain-con 96.5 0.36 7.8E-06 41.0 15.6 150 269-423 141-292 (304)
253 COG0457 NrfG FOG: TPR repeat [ 96.5 0.42 9.1E-06 39.9 26.9 227 166-401 37-268 (291)
254 PF04053 Coatomer_WDAD: Coatom 96.4 0.27 5.8E-06 45.5 16.3 158 59-250 269-428 (443)
255 PF12921 ATP13: Mitochondrial 96.4 0.057 1.2E-06 40.0 9.8 57 328-384 47-103 (126)
256 PF08631 SPO22: Meiosis protei 96.4 0.55 1.2E-05 40.7 24.6 127 164-291 5-150 (278)
257 PF04184 ST7: ST7 protein; In 96.4 0.77 1.7E-05 42.1 18.1 103 299-402 261-379 (539)
258 PF04184 ST7: ST7 protein; In 96.4 0.78 1.7E-05 42.0 18.1 73 333-405 259-332 (539)
259 PF13512 TPR_18: Tetratricopep 96.3 0.2 4.2E-06 37.7 12.0 92 340-431 17-127 (142)
260 PRK11619 lytic murein transgly 96.3 1.2 2.6E-05 43.6 30.1 315 61-397 43-374 (644)
261 KOG4234 TPR repeat-containing 96.3 0.045 9.7E-07 43.2 8.8 90 341-432 103-197 (271)
262 PF02259 FAT: FAT domain; Int 96.3 0.84 1.8E-05 41.3 22.1 150 260-415 144-304 (352)
263 KOG4555 TPR repeat-containing 96.2 0.083 1.8E-06 38.5 9.2 94 196-292 52-145 (175)
264 PF00515 TPR_1: Tetratricopept 96.2 0.011 2.5E-07 32.0 3.9 31 371-401 3-33 (34)
265 PF07719 TPR_2: Tetratricopept 96.1 0.015 3.3E-07 31.4 4.1 31 371-401 3-33 (34)
266 PF08631 SPO22: Meiosis protei 96.0 0.9 2E-05 39.4 25.6 102 189-297 86-192 (278)
267 PF04053 Coatomer_WDAD: Coatom 95.9 0.64 1.4E-05 43.1 15.9 131 189-358 297-427 (443)
268 KOG3941 Intermediate in Toll s 95.9 0.08 1.7E-06 44.2 9.0 98 39-136 53-173 (406)
269 PF13431 TPR_17: Tetratricopep 95.7 0.0097 2.1E-07 32.3 2.2 32 356-389 2-33 (34)
270 PF06552 TOM20_plant: Plant sp 95.5 0.036 7.8E-07 43.1 5.4 112 313-435 7-139 (186)
271 COG3629 DnrI DNA-binding trans 95.5 0.098 2.1E-06 44.5 8.4 62 334-397 154-215 (280)
272 COG4785 NlpI Lipoprotein NlpI, 95.2 0.17 3.8E-06 40.6 8.3 127 291-425 57-188 (297)
273 KOG1464 COP9 signalosome, subu 95.2 1.6 3.4E-05 36.6 15.3 161 239-399 42-221 (440)
274 smart00299 CLH Clathrin heavy 95.2 1 2.2E-05 34.3 15.1 88 52-147 8-95 (140)
275 COG1747 Uncharacterized N-term 95.2 2.6 5.6E-05 38.9 20.3 179 223-413 65-249 (711)
276 smart00299 CLH Clathrin heavy 95.2 1 2.2E-05 34.3 15.5 124 267-414 12-136 (140)
277 KOG4648 Uncharacterized conser 95.1 0.13 2.8E-06 44.3 8.0 92 307-403 107-199 (536)
278 KOG1258 mRNA processing protei 95.1 2.9 6.4E-05 39.3 33.8 181 225-417 298-489 (577)
279 PF10602 RPN7: 26S proteasome 95.0 0.21 4.6E-06 39.7 8.7 65 190-254 39-103 (177)
280 PF09205 DUF1955: Domain of un 95.0 0.99 2.2E-05 33.3 13.3 59 266-325 90-148 (161)
281 KOG4642 Chaperone-dependent E3 95.0 0.13 2.8E-06 42.0 7.2 101 307-412 20-126 (284)
282 KOG1920 IkappaB kinase complex 95.0 5 0.00011 41.2 20.5 80 268-359 971-1052(1265)
283 KOG4648 Uncharacterized conser 95.0 0.087 1.9E-06 45.3 6.5 93 341-437 105-197 (536)
284 PF13176 TPR_7: Tetratricopept 94.9 0.034 7.3E-07 30.7 2.7 25 406-430 2-26 (36)
285 PF13181 TPR_8: Tetratricopept 94.9 0.047 1E-06 29.5 3.3 30 371-400 3-32 (34)
286 PF13176 TPR_7: Tetratricopept 94.7 0.052 1.1E-06 29.9 3.2 25 372-396 2-26 (36)
287 PF02259 FAT: FAT domain; Int 94.7 3.2 6.9E-05 37.5 25.1 153 222-381 144-304 (352)
288 PF09613 HrpB1_HrpK: Bacterial 94.6 0.63 1.4E-05 35.8 9.6 117 298-422 8-128 (160)
289 PF13170 DUF4003: Protein of u 94.5 2.2 4.9E-05 37.2 14.3 62 279-341 160-225 (297)
290 COG3629 DnrI DNA-binding trans 94.5 0.49 1.1E-05 40.4 9.8 79 224-306 153-236 (280)
291 PF00515 TPR_1: Tetratricopept 94.3 0.12 2.6E-06 27.8 4.1 28 404-431 2-29 (34)
292 PF07719 TPR_2: Tetratricopept 94.3 0.12 2.6E-06 27.8 4.1 28 404-431 2-29 (34)
293 KOG3941 Intermediate in Toll s 94.3 0.6 1.3E-05 39.3 9.6 31 277-307 87-117 (406)
294 KOG2114 Vacuolar assembly/sort 94.2 6.3 0.00014 38.8 23.7 131 36-175 350-486 (933)
295 PF06552 TOM20_plant: Plant sp 94.1 1.7 3.6E-05 34.2 11.1 108 278-398 7-136 (186)
296 COG4785 NlpI Lipoprotein NlpI, 94.0 2.8 6E-05 34.1 16.5 161 261-432 98-266 (297)
297 KOG2396 HAT (Half-A-TPR) repea 93.9 5.2 0.00011 36.9 30.5 246 169-431 299-558 (568)
298 PRK09687 putative lyase; Provi 93.7 4.3 9.4E-05 35.2 22.4 244 39-309 25-279 (280)
299 COG2976 Uncharacterized protei 93.6 3.1 6.7E-05 33.2 13.1 115 280-400 70-190 (207)
300 COG4649 Uncharacterized protei 93.5 2.9 6.3E-05 32.6 15.0 132 263-397 60-195 (221)
301 PF10602 RPN7: 26S proteasome 93.4 2.4 5.2E-05 33.8 11.5 96 153-249 37-138 (177)
302 PF13174 TPR_6: Tetratricopept 93.4 0.15 3.2E-06 27.1 3.3 28 373-400 4-31 (33)
303 KOG1308 Hsp70-interacting prot 93.3 0.049 1.1E-06 46.8 1.8 87 309-399 126-212 (377)
304 KOG2471 TPR repeat-containing 93.2 6.9 0.00015 36.1 15.8 110 307-416 250-382 (696)
305 PRK15180 Vi polysaccharide bio 93.1 1.7 3.7E-05 39.6 10.9 135 269-409 296-431 (831)
306 TIGR02561 HrpB1_HrpK type III 93.1 1.3 2.9E-05 33.5 8.7 61 298-363 8-74 (153)
307 PF10345 Cohesin_load: Cohesin 92.9 10 0.00023 37.3 32.3 420 8-431 50-605 (608)
308 KOG1550 Extracellular protein 92.5 11 0.00024 36.6 17.5 148 203-363 228-394 (552)
309 PRK09687 putative lyase; Provi 92.5 6.7 0.00014 34.1 26.1 232 84-344 35-278 (280)
310 KOG4642 Chaperone-dependent E3 92.4 3.8 8.3E-05 33.8 11.1 118 271-394 19-142 (284)
311 PRK10941 hypothetical protein; 92.3 1.3 2.8E-05 38.0 9.0 68 337-406 185-252 (269)
312 KOG0890 Protein kinase of the 92.2 23 0.0005 39.7 23.4 316 91-432 1388-1731(2382)
313 COG3947 Response regulator con 92.2 6.7 0.00015 33.5 15.5 68 371-438 281-353 (361)
314 KOG2114 Vacuolar assembly/sort 92.2 13 0.00028 36.8 16.3 49 270-319 405-453 (933)
315 KOG1920 IkappaB kinase complex 92.2 12 0.00025 38.7 16.3 130 133-287 920-1051(1265)
316 PF04097 Nic96: Nup93/Nic96; 92.1 13 0.00028 36.6 21.0 66 50-116 110-182 (613)
317 COG4455 ImpE Protein of avirul 92.1 1.3 2.9E-05 35.8 8.1 75 299-378 3-81 (273)
318 PF09613 HrpB1_HrpK: Bacterial 91.9 4.8 0.0001 31.1 14.2 110 269-387 17-127 (160)
319 PF14853 Fis1_TPR_C: Fis1 C-te 91.9 0.56 1.2E-05 28.5 4.6 36 372-407 4-39 (53)
320 PF07035 Mic1: Colon cancer-as 91.8 5.2 0.00011 31.4 13.6 132 72-215 15-148 (167)
321 KOG0376 Serine-threonine phosp 91.8 0.25 5.4E-06 44.7 4.3 101 304-409 11-112 (476)
322 PF00637 Clathrin: Region in C 91.7 0.29 6.2E-06 37.5 4.2 54 57-110 13-66 (143)
323 PF11207 DUF2989: Protein of u 91.6 1.5 3.3E-05 35.2 8.0 76 204-282 123-198 (203)
324 KOG1586 Protein required for f 91.6 6.9 0.00015 32.3 12.3 29 374-402 159-187 (288)
325 PF10345 Cohesin_load: Cohesin 91.5 15 0.00033 36.2 32.0 194 49-252 28-253 (608)
326 PF00637 Clathrin: Region in C 91.5 0.31 6.7E-06 37.3 4.2 87 91-180 12-98 (143)
327 PF08311 Mad3_BUB1_I: Mad3/BUB 91.4 3 6.6E-05 31.0 9.1 45 351-395 81-125 (126)
328 KOG0276 Vesicle coat complex C 91.3 6.4 0.00014 37.3 12.6 80 297-393 666-745 (794)
329 cd00923 Cyt_c_Oxidase_Va Cytoc 91.2 2 4.4E-05 29.7 7.1 62 278-341 23-84 (103)
330 KOG1585 Protein required for f 91.2 7.9 0.00017 32.2 16.8 207 155-393 34-251 (308)
331 PF13374 TPR_10: Tetratricopep 91.2 0.59 1.3E-05 26.4 4.3 28 404-431 3-30 (42)
332 PRK11619 lytic murein transgly 91.1 17 0.00037 36.0 34.4 97 340-440 414-513 (644)
333 KOG4570 Uncharacterized conser 91.1 1.2 2.7E-05 38.1 7.4 101 115-216 58-164 (418)
334 TIGR02561 HrpB1_HrpK type III 91.0 5.6 0.00012 30.3 13.9 51 272-326 20-73 (153)
335 COG2909 MalT ATP-dependent tra 90.7 20 0.00042 36.0 22.8 200 234-437 425-652 (894)
336 PF07721 TPR_4: Tetratricopept 90.7 0.44 9.6E-06 23.8 2.9 23 405-427 3-25 (26)
337 COG4649 Uncharacterized protei 90.6 6.9 0.00015 30.6 14.7 132 235-369 69-203 (221)
338 PF02284 COX5A: Cytochrome c o 90.5 4.6 9.9E-05 28.3 9.4 60 280-341 28-87 (108)
339 PF07035 Mic1: Colon cancer-as 90.5 7.2 0.00016 30.6 15.0 32 284-315 16-47 (167)
340 KOG0276 Vesicle coat complex C 90.4 8.7 0.00019 36.5 12.6 148 134-322 599-746 (794)
341 PF11207 DUF2989: Protein of u 90.3 3.2 7E-05 33.4 8.7 75 169-244 123-198 (203)
342 KOG2066 Vacuolar assembly/sort 90.2 20 0.00043 35.3 24.0 165 58-250 363-531 (846)
343 PF13170 DUF4003: Protein of u 90.2 12 0.00026 32.7 19.5 16 351-366 200-215 (297)
344 cd00923 Cyt_c_Oxidase_Va Cytoc 90.1 2.5 5.4E-05 29.2 6.8 50 167-216 22-71 (103)
345 smart00028 TPR Tetratricopepti 90.0 0.57 1.2E-05 24.1 3.3 26 373-398 5-30 (34)
346 PF13174 TPR_6: Tetratricopept 89.9 0.6 1.3E-05 24.6 3.3 28 405-432 2-29 (33)
347 KOG4570 Uncharacterized conser 89.8 4 8.8E-05 35.2 9.3 48 277-324 115-162 (418)
348 PF13181 TPR_8: Tetratricopept 89.7 1.1 2.3E-05 23.9 4.3 28 404-431 2-29 (34)
349 PF02284 COX5A: Cytochrome c o 89.6 3.6 7.7E-05 28.8 7.3 60 170-232 28-87 (108)
350 PF13374 TPR_10: Tetratricopep 89.6 0.72 1.6E-05 26.0 3.7 29 370-398 3-31 (42)
351 KOG0545 Aryl-hydrocarbon recep 89.3 7.3 0.00016 32.4 10.1 75 335-411 232-306 (329)
352 PF13929 mRNA_stabil: mRNA sta 89.3 13 0.00029 31.9 13.9 152 155-311 134-292 (292)
353 KOG0890 Protein kinase of the 88.8 47 0.001 37.6 22.9 318 56-399 1388-1732(2382)
354 TIGR02508 type_III_yscG type I 88.8 6.3 0.00014 27.5 9.3 87 101-191 20-106 (115)
355 PF14561 TPR_20: Tetratricopep 88.5 6.3 0.00014 27.2 8.3 53 366-418 19-73 (90)
356 COG2909 MalT ATP-dependent tra 88.4 30 0.00064 34.8 27.4 226 198-428 426-684 (894)
357 COG4455 ImpE Protein of avirul 88.3 4 8.7E-05 33.2 7.9 78 155-233 4-81 (273)
358 PRK15180 Vi polysaccharide bio 88.1 22 0.00047 32.9 14.3 92 269-363 330-421 (831)
359 COG2976 Uncharacterized protei 87.3 14 0.0003 29.7 13.0 93 195-292 97-189 (207)
360 smart00386 HAT HAT (Half-A-TPR 87.2 1.6 3.4E-05 22.8 3.9 29 383-411 1-29 (33)
361 KOG4507 Uncharacterized conser 87.1 3.7 8.1E-05 38.6 8.0 100 310-414 620-721 (886)
362 PF08424 NRDE-2: NRDE-2, neces 87.0 22 0.00047 31.7 14.5 78 350-429 48-128 (321)
363 PF08424 NRDE-2: NRDE-2, neces 86.8 22 0.00049 31.6 17.1 120 314-437 48-189 (321)
364 TIGR03504 FimV_Cterm FimV C-te 86.7 1.1 2.4E-05 25.9 3.0 24 408-431 4-27 (44)
365 KOG3364 Membrane protein invol 86.7 11 0.00024 28.1 9.8 75 330-404 29-106 (149)
366 COG5191 Uncharacterized conser 86.4 2.3 5E-05 36.5 5.9 81 329-411 103-184 (435)
367 PRK10941 hypothetical protein; 86.1 4.9 0.00011 34.5 7.9 60 372-431 184-243 (269)
368 PF14561 TPR_20: Tetratricopep 85.3 5.1 0.00011 27.7 6.4 45 389-433 8-52 (90)
369 COG4976 Predicted methyltransf 85.1 1.7 3.8E-05 35.5 4.4 55 345-401 7-61 (287)
370 KOG0376 Serine-threonine phosp 84.6 2.4 5.1E-05 38.8 5.5 106 268-381 10-117 (476)
371 KOG2066 Vacuolar assembly/sort 84.2 46 0.001 33.0 22.8 138 35-180 371-533 (846)
372 KOG1550 Extracellular protein 84.2 43 0.00093 32.6 21.6 180 168-363 228-427 (552)
373 KOG1258 mRNA processing protei 84.1 40 0.00087 32.2 27.0 184 186-383 296-489 (577)
374 PF07575 Nucleopor_Nup85: Nup8 84.0 45 0.00097 32.6 20.5 76 282-360 390-465 (566)
375 KOG3364 Membrane protein invol 82.0 19 0.00041 27.0 8.3 64 368-431 31-99 (149)
376 PRK13800 putative oxidoreducta 81.8 71 0.0015 33.4 24.1 257 40-326 624-881 (897)
377 PF14853 Fis1_TPR_C: Fis1 C-te 81.7 3.9 8.5E-05 24.8 4.0 31 405-437 3-33 (53)
378 KOG0545 Aryl-hydrocarbon recep 81.6 23 0.00051 29.6 9.5 60 372-431 233-292 (329)
379 PF10579 Rapsyn_N: Rapsyn N-te 81.4 5.7 0.00012 26.4 4.9 47 309-355 18-65 (80)
380 KOG4507 Uncharacterized conser 81.2 11 0.00025 35.6 8.5 136 294-432 568-705 (886)
381 PRK13800 putative oxidoreducta 80.8 77 0.0017 33.2 24.8 258 139-431 622-880 (897)
382 TIGR03504 FimV_Cterm FimV C-te 80.2 4.8 0.0001 23.3 3.9 25 57-81 5-29 (44)
383 COG1747 Uncharacterized N-term 80.1 54 0.0012 30.9 22.6 63 151-216 65-127 (711)
384 PF13762 MNE1: Mitochondrial s 80.0 19 0.00042 27.4 8.1 81 54-134 42-128 (145)
385 PF10579 Rapsyn_N: Rapsyn N-te 80.0 3.1 6.7E-05 27.6 3.4 45 381-425 18-65 (80)
386 KOG4077 Cytochrome c oxidase, 79.7 11 0.00025 27.6 6.4 46 69-114 67-112 (149)
387 PF12862 Apc5: Anaphase-promot 79.4 16 0.00035 25.4 7.2 27 373-399 45-71 (94)
388 PF13762 MNE1: Mitochondrial s 79.1 26 0.00056 26.7 9.9 76 125-200 43-128 (145)
389 KOG2471 TPR repeat-containing 78.6 58 0.0013 30.5 13.3 111 232-345 248-381 (696)
390 KOG4814 Uncharacterized conser 78.2 16 0.00035 35.0 8.5 87 343-431 364-456 (872)
391 PF04097 Nic96: Nup93/Nic96; 78.1 75 0.0016 31.4 15.8 44 122-165 112-158 (613)
392 PF11846 DUF3366: Domain of un 77.7 16 0.00034 29.7 7.8 36 328-363 139-174 (193)
393 KOG1464 COP9 signalosome, subu 77.7 43 0.00094 28.5 22.5 168 157-325 70-259 (440)
394 KOG4567 GTPase-activating prot 76.7 39 0.00085 29.4 9.7 71 106-177 263-343 (370)
395 KOG3824 Huntingtin interacting 76.6 6.2 0.00013 33.9 5.1 58 345-404 128-185 (472)
396 KOG2063 Vacuolar assembly/sort 75.9 82 0.0018 32.3 13.2 119 226-345 506-638 (877)
397 PF09797 NatB_MDM20: N-acetylt 75.8 64 0.0014 29.4 18.0 212 226-444 3-258 (365)
398 KOG4077 Cytochrome c oxidase, 75.8 21 0.00046 26.3 6.8 59 280-340 67-125 (149)
399 KOG4279 Serine/threonine prote 75.7 89 0.0019 31.1 14.0 50 342-405 353-402 (1226)
400 KOG0686 COP9 signalosome, subu 74.9 67 0.0014 29.3 12.9 58 123-180 152-215 (466)
401 KOG2063 Vacuolar assembly/sort 74.6 1.1E+02 0.0023 31.5 14.8 27 154-180 506-532 (877)
402 PF09986 DUF2225: Uncharacteri 73.7 24 0.00052 29.2 7.8 31 403-433 165-195 (214)
403 PF07163 Pex26: Pex26 protein; 73.3 60 0.0013 28.0 13.1 87 269-356 90-181 (309)
404 COG4976 Predicted methyltransf 72.5 8.2 0.00018 31.8 4.6 55 378-432 4-58 (287)
405 KOG4521 Nuclear pore complex, 72.1 1.4E+02 0.003 31.6 14.2 164 231-399 927-1133(1480)
406 COG0790 FOG: TPR repeat, SEL1 71.5 69 0.0015 27.9 21.4 149 276-435 91-269 (292)
407 cd08819 CARD_MDA5_2 Caspase ac 71.5 29 0.00062 23.7 6.2 35 134-169 49-83 (88)
408 KOG1586 Protein required for f 71.4 60 0.0013 27.2 17.9 90 311-401 128-227 (288)
409 PF09477 Type_III_YscG: Bacter 71.2 35 0.00076 24.4 8.4 39 312-352 21-59 (116)
410 PF07163 Pex26: Pex26 protein; 70.7 51 0.0011 28.4 8.9 87 194-285 90-181 (309)
411 PF09477 Type_III_YscG: Bacter 70.3 37 0.0008 24.3 10.6 88 99-190 19-106 (116)
412 PF11848 DUF3368: Domain of un 70.0 20 0.00044 21.2 4.9 33 62-94 13-45 (48)
413 PRK13342 recombination factor 69.5 98 0.0021 28.9 19.0 43 155-197 230-275 (413)
414 PF12862 Apc5: Anaphase-promot 69.4 29 0.00063 24.1 6.5 23 268-290 47-69 (94)
415 TIGR02508 type_III_yscG type I 69.1 37 0.00081 23.9 9.0 87 202-301 20-106 (115)
416 PF14689 SPOB_a: Sensor_kinase 69.1 19 0.00041 22.7 4.9 25 337-361 27-51 (62)
417 KOG2908 26S proteasome regulat 68.8 85 0.0018 27.9 11.8 67 231-297 82-155 (380)
418 smart00777 Mad3_BUB1_I Mad3/BU 68.6 46 0.00099 24.7 8.5 43 351-393 81-123 (125)
419 PF11817 Foie-gras_1: Foie gra 68.4 28 0.00061 29.6 7.4 57 302-358 183-243 (247)
420 PF04910 Tcf25: Transcriptiona 67.9 97 0.0021 28.2 19.1 142 235-397 21-167 (360)
421 KOG0551 Hsp90 co-chaperone CNS 67.4 66 0.0014 28.5 9.1 93 303-397 87-181 (390)
422 COG2912 Uncharacterized conser 67.3 32 0.00069 29.4 7.2 64 339-404 187-250 (269)
423 KOG1308 Hsp70-interacting prot 67.1 8.2 0.00018 33.9 3.8 91 272-366 124-215 (377)
424 PF11663 Toxin_YhaV: Toxin wit 66.9 9 0.0002 28.5 3.5 29 64-94 108-136 (140)
425 PHA02875 ankyrin repeat protei 66.7 1.1E+02 0.0024 28.4 13.3 206 61-298 9-231 (413)
426 COG5191 Uncharacterized conser 66.2 9 0.0002 33.1 3.8 77 365-443 103-180 (435)
427 PF07575 Nucleopor_Nup85: Nup8 66.1 11 0.00024 36.7 5.1 73 71-145 390-462 (566)
428 COG3947 Response regulator con 65.9 90 0.002 27.1 17.0 57 228-288 283-339 (361)
429 cd00280 TRFH Telomeric Repeat 65.5 62 0.0013 25.9 7.9 20 305-324 119-138 (200)
430 COG5187 RPN7 26S proteasome re 65.0 85 0.0019 27.2 9.1 117 314-433 55-185 (412)
431 smart00777 Mad3_BUB1_I Mad3/BU 64.9 50 0.0011 24.5 7.1 42 386-427 80-123 (125)
432 PRK09857 putative transposase; 64.0 63 0.0014 28.3 8.8 64 374-437 211-274 (292)
433 PRK13341 recombination factor 63.6 1.7E+02 0.0038 29.6 17.3 135 68-216 171-327 (725)
434 PF04090 RNA_pol_I_TF: RNA pol 63.4 81 0.0017 25.7 10.5 30 262-291 41-70 (199)
435 PF01347 Vitellogenin_N: Lipop 63.2 1.6E+02 0.0035 29.2 16.6 61 18-82 347-409 (618)
436 PF09670 Cas_Cas02710: CRISPR- 63.2 1.2E+02 0.0027 27.8 12.0 54 271-325 140-197 (379)
437 KOG0687 26S proteasome regulat 63.1 95 0.0021 27.4 9.2 132 294-430 67-208 (393)
438 PRK10564 maltose regulon perip 62.7 16 0.00036 31.6 4.8 36 54-89 260-295 (303)
439 COG0735 Fur Fe2+/Zn2+ uptake r 62.0 61 0.0013 24.8 7.5 55 328-384 16-70 (145)
440 COG4941 Predicted RNA polymera 61.2 1.2E+02 0.0026 27.0 13.4 123 276-403 270-399 (415)
441 COG0735 Fur Fe2+/Zn2+ uptake r 60.7 37 0.0008 26.0 6.1 64 73-137 8-71 (145)
442 PF09670 Cas_Cas02710: CRISPR- 60.5 1.4E+02 0.003 27.5 11.3 58 230-291 137-198 (379)
443 KOG0991 Replication factor C, 60.4 1E+02 0.0022 25.9 14.5 139 230-382 136-285 (333)
444 PRK10564 maltose regulon perip 60.2 18 0.00039 31.3 4.6 40 153-192 258-297 (303)
445 PF11817 Foie-gras_1: Foie gra 60.1 54 0.0012 27.9 7.6 22 338-359 183-204 (247)
446 KOG3824 Huntingtin interacting 59.5 20 0.00043 31.1 4.7 51 380-430 127-177 (472)
447 KOG3807 Predicted membrane pro 59.2 1.3E+02 0.0028 26.7 12.5 169 230-416 190-359 (556)
448 PF14689 SPOB_a: Sensor_kinase 59.0 29 0.00063 21.9 4.4 24 192-215 28-51 (62)
449 PF09986 DUF2225: Uncharacteri 58.3 1.1E+02 0.0023 25.4 10.2 63 337-399 122-195 (214)
450 cd00280 TRFH Telomeric Repeat 58.2 96 0.0021 24.9 8.3 49 313-362 85-140 (200)
451 PF10255 Paf67: RNA polymerase 58.1 98 0.0021 28.6 9.1 61 337-397 126-192 (404)
452 PF11846 DUF3366: Domain of un 57.5 44 0.00096 27.0 6.5 46 352-400 130-175 (193)
453 PF10366 Vps39_1: Vacuolar sor 57.4 70 0.0015 23.0 7.8 27 154-180 41-67 (108)
454 PRK12798 chemotaxis protein; R 57.3 1.6E+02 0.0035 27.2 21.6 195 237-437 125-329 (421)
455 PRK11639 zinc uptake transcrip 56.4 37 0.00081 26.8 5.6 39 99-137 38-76 (169)
456 PF07720 TPR_3: Tetratricopept 56.4 32 0.0007 18.8 4.1 17 375-391 7-23 (36)
457 PHA02875 ankyrin repeat protei 56.2 1.7E+02 0.0037 27.1 17.3 194 35-248 14-223 (413)
458 KOG0292 Vesicle coat complex C 56.0 15 0.00032 36.7 3.8 27 369-395 672-698 (1202)
459 cd07153 Fur_like Ferric uptake 55.7 36 0.00078 24.7 5.2 47 56-102 5-51 (116)
460 PF10255 Paf67: RNA polymerase 55.6 28 0.00061 31.9 5.3 64 298-361 123-192 (404)
461 KOG4567 GTPase-activating prot 55.6 1.3E+02 0.0028 26.5 8.7 44 173-216 264-307 (370)
462 KOG0551 Hsp90 co-chaperone CNS 55.2 1.4E+02 0.0031 26.6 9.0 98 262-362 81-182 (390)
463 COG4259 Uncharacterized protei 54.8 72 0.0016 22.4 6.9 54 352-406 56-109 (121)
464 PF08311 Mad3_BUB1_I: Mad3/BUB 54.4 88 0.0019 23.3 9.8 60 367-429 64-125 (126)
465 PF11848 DUF3368: Domain of un 53.8 45 0.00097 19.7 5.1 33 273-305 13-45 (48)
466 KOG4279 Serine/threonine prote 52.0 2.6E+02 0.0056 28.2 10.9 25 413-439 376-400 (1226)
467 PF01475 FUR: Ferric uptake re 51.3 33 0.00072 25.1 4.4 45 56-100 12-56 (120)
468 COG2912 Uncharacterized conser 51.3 55 0.0012 28.0 6.0 59 373-431 185-243 (269)
469 PF14669 Asp_Glu_race_2: Putat 51.1 1.3E+02 0.0029 24.3 12.3 161 79-249 1-206 (233)
470 PF15297 CKAP2_C: Cytoskeleton 50.7 52 0.0011 29.3 5.9 68 345-414 114-186 (353)
471 cd08819 CARD_MDA5_2 Caspase ac 50.6 80 0.0017 21.6 7.1 66 69-140 20-85 (88)
472 PF11663 Toxin_YhaV: Toxin wit 49.4 18 0.0004 26.9 2.6 32 345-379 107-138 (140)
473 PRK14700 recombination factor 49.1 1.9E+02 0.004 25.5 17.2 122 82-216 63-195 (300)
474 PF03745 DUF309: Domain of unk 48.9 64 0.0014 20.4 4.7 48 61-108 9-61 (62)
475 PRK12798 chemotaxis protein; R 48.8 2.2E+02 0.0048 26.3 22.6 232 132-370 92-332 (421)
476 PF12968 DUF3856: Domain of Un 48.3 1.1E+02 0.0024 22.6 8.8 21 224-244 55-75 (144)
477 COG5108 RPO41 Mitochondrial DN 47.5 1.2E+02 0.0025 29.9 8.0 79 157-236 33-115 (1117)
478 PF14649 Spatacsin_C: Spatacsi 47.5 2E+02 0.0043 25.3 13.4 129 296-433 19-156 (296)
479 KOG2396 HAT (Half-A-TPR) repea 47.3 2.6E+02 0.0056 26.6 30.7 73 366-438 457-532 (568)
480 KOG2297 Predicted translation 47.1 2E+02 0.0044 25.3 10.0 155 70-244 186-341 (412)
481 COG5108 RPO41 Mitochondrial DN 46.4 1.9E+02 0.0041 28.5 9.1 82 192-274 33-115 (1117)
482 cd08326 CARD_CASP9 Caspase act 45.9 90 0.002 21.2 5.4 14 102-115 46-59 (84)
483 cd08326 CARD_CASP9 Caspase act 45.7 17 0.00037 24.7 1.9 56 42-101 21-76 (84)
484 PF06957 COPI_C: Coatomer (COP 44.9 2.6E+02 0.0057 26.0 11.9 50 353-402 283-333 (422)
485 COG2178 Predicted RNA-binding 44.6 1.7E+02 0.0037 23.7 9.2 15 310-324 134-148 (204)
486 PF04781 DUF627: Protein of un 43.9 1.2E+02 0.0027 21.9 7.8 36 388-423 63-98 (111)
487 PF14863 Alkyl_sulf_dimr: Alky 43.4 1.4E+02 0.0031 22.8 6.7 46 373-418 74-119 (141)
488 KOG0687 26S proteasome regulat 43.0 2.4E+02 0.0053 25.1 13.5 114 298-411 105-224 (393)
489 PF07064 RIC1: RIC1; InterPro 43.0 2.2E+02 0.0047 24.5 15.2 155 53-216 84-249 (258)
490 KOG0686 COP9 signalosome, subu 42.6 2.8E+02 0.006 25.6 12.3 65 152-216 150-216 (466)
491 PF07064 RIC1: RIC1; InterPro 40.3 2.4E+02 0.0052 24.3 15.1 21 228-248 86-106 (258)
492 PF10858 DUF2659: Protein of u 40.3 1.8E+02 0.0039 22.8 11.3 125 311-435 71-203 (220)
493 TIGR02710 CRISPR-associated pr 40.0 3E+02 0.0065 25.3 11.9 25 271-295 139-163 (380)
494 PF09454 Vps23_core: Vps23 cor 39.7 1E+02 0.0022 19.8 4.7 50 259-309 5-54 (65)
495 PRK09462 fur ferric uptake reg 39.7 1.4E+02 0.003 22.9 6.4 65 36-100 1-66 (148)
496 PF10366 Vps39_1: Vacuolar sor 39.6 1.4E+02 0.0031 21.4 7.2 26 372-397 42-67 (108)
497 KOG2659 LisH motif-containing 39.0 2.3E+02 0.005 23.7 8.8 100 221-322 23-128 (228)
498 PF10155 DUF2363: Uncharacteri 38.9 1.6E+02 0.0035 21.9 10.1 110 35-147 4-124 (126)
499 cd07153 Fur_like Ferric uptake 38.8 81 0.0018 22.8 4.8 45 268-312 6-50 (116)
500 PF09868 DUF2095: Uncharacteri 38.7 1E+02 0.0022 22.3 4.8 26 56-81 66-91 (128)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.1e-69 Score=525.62 Aligned_cols=429 Identities=31% Similarity=0.517 Sum_probs=413.7
Q ss_pred CcchhHHHhhhhhhhhHHHhhhhhhhhhcccccCCcchHHHhhccCCCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhc
Q 048090 1 NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 80 (447)
++|..+.+.|+. ||+.++|.|+.+|+++| +++.|.++|++|+.||+.+||.++.+|++.|++++|+++|++|.+.
T Consensus 144 ~l~~~m~~~g~~--~~~~~~n~Li~~y~k~g---~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~ 218 (697)
T PLN03081 144 AVYWHVESSGFE--PDQYMMNRVLLMHVKCG---MLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED 218 (697)
T ss_pred HHHHHHHHhCCC--cchHHHHHHHHHHhcCC---CHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 378899999987 55899999999999999 5999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHH
Q 048090 81 GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160 (447)
Q Consensus 81 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~ 160 (447)
|+.|+..+|+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.|+++|+++|++++|.++|++|.++|..+||.++.
T Consensus 219 g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~ 298 (697)
T PLN03081 219 GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLA 298 (697)
T ss_pred CCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCCh
Q 048090 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240 (447)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (447)
+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+. |+.|+..++++|+.+|++.|++
T Consensus 299 ~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~--g~~~d~~~~~~Li~~y~k~G~~ 376 (697)
T PLN03081 299 GYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT--GFPLDIVANTALVDLYSKWGRM 376 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh--CCCCCeeehHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred HHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048090 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320 (447)
Q Consensus 241 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 320 (447)
++|.++|++| ..||..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|
T Consensus 377 ~~A~~vf~~m-------~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f 449 (697)
T PLN03081 377 EDARNVFDRM-------PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449 (697)
T ss_pred HHHHHHHHhC-------CCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 9999999965 457999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCC
Q 048090 321 EWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400 (447)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 400 (447)
+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|. +.| +..+|++|+.+|...|+++.|..+++++.+..|
T Consensus 450 ~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~---~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p 525 (697)
T PLN03081 450 QSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP---FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGP 525 (697)
T ss_pred HHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC---CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence 9999877999999999999999999999999999998873 446 566799999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCccccccccC
Q 048090 401 HNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447 (447)
Q Consensus 401 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~g 447 (447)
++..+|..|+..|.+.|++++|.++++.|++.|+.+.++.+|+.++|
T Consensus 526 ~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~ 572 (697)
T PLN03081 526 EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKK 572 (697)
T ss_pred CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECC
Confidence 99999999999999999999999999999999999999999999875
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3e-67 Score=522.37 Aligned_cols=436 Identities=36% Similarity=0.606 Sum_probs=412.6
Q ss_pred CcchhHHHhhhhhhhhHHHhhhhhhhhhcccccCCcchHHHhhccCCCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhc
Q 048090 1 NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 80 (447)
+||.++.+.|+. +|+.++|+|+.+|+++| +++.|.++|++|+.||+.+||++|.+|++.|++++|+++|++|.+.
T Consensus 208 ~~~~~~~~~g~~--~~~~~~n~Li~~y~k~g---~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~ 282 (857)
T PLN03077 208 EVHAHVVRFGFE--LDVDVVNALITMYVKCG---DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL 282 (857)
T ss_pred HHHHHHHHcCCC--cccchHhHHHHHHhcCC---CHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 478899999986 55899999999999999 5999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHH
Q 048090 81 GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160 (447)
Q Consensus 81 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~ 160 (447)
|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.++.+|+++|++++|.++|++|..||..+||.++.
T Consensus 283 g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~ 362 (857)
T PLN03077 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS 362 (857)
T ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCCh
Q 048090 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240 (447)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (447)
+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+. |+.|+..+++.|+.+|++.|++
T Consensus 363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~~~~~~n~Li~~y~k~g~~ 440 (857)
T PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK--GLISYVVVANALIEMYSKCKCI 440 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh--CCCcchHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999999999999999998 7899999999999999999999
Q ss_pred HHHHHHHHhhhhhcc---------------------------cC------------------------------------
Q 048090 241 TKALQVFNLAGHRLE---------------------------GE------------------------------------ 257 (447)
Q Consensus 241 ~~A~~~~~~~~~~~~---------------------------~~------------------------------------ 257 (447)
++|.++|++|..... .+
T Consensus 441 ~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 441 DKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred HHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence 999999986643200 00
Q ss_pred -----------------------------CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 048090 258 -----------------------------INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308 (447)
Q Consensus 258 -----------------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 308 (447)
..+|..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 156777899999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHH
Q 048090 309 HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388 (447)
Q Consensus 309 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 388 (447)
+.|++++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|. +.| +..+|.+|+.+|...|+.+.+
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~p-d~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITP-DPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCC-CHHHHHHHHHHHHHcCChHHH
Confidence 9999999999999999777999999999999999999999999999999994 446 677799999999999999999
Q ss_pred HHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCccccccccC
Q 048090 389 KLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447 (447)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~g 447 (447)
+...++++++.|++...|..|.+.|...|+|++|.++.+.|++.|++++++++|++|+|
T Consensus 677 e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~ 735 (857)
T PLN03077 677 ELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKG 735 (857)
T ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999976
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8e-65 Score=496.41 Aligned_cols=434 Identities=18% Similarity=0.203 Sum_probs=398.9
Q ss_pred cchhHHHhhhhhhhhHHHhhhhhhhhhcccccCCcchHHHhhccCCCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcC
Q 048090 2 VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHG 81 (447)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 81 (447)
++..|.+.|... ++..+++.++..|.+.| .+++|..+|+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|
T Consensus 392 Lfd~M~~~gvv~-~~~v~~~~li~~~~~~g---~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G 467 (1060)
T PLN03218 392 LLEDMEKRGLLD-MDKIYHAKFFKACKKQR---AVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG 467 (1060)
T ss_pred HHHHHHhCCCCC-chHHHHHHHHHHHHHCC---CHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC
Confidence 345677777643 56788889999999887 59999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCC----CCchhhHHH
Q 048090 82 IFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP----VKNSVCANA 157 (447)
Q Consensus 82 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ 157 (447)
+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.
T Consensus 468 l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYns 547 (1060)
T PLN03218 468 LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNA 547 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999996 689999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhh--cCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 048090 158 LLSGYCEAKLWAGGLELVRLMPA--LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235 (447)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 235 (447)
+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+. ++.|+..+|+.++.+|+
T Consensus 548 LI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~--gi~p~~~tynsLI~ay~ 625 (1060)
T PLN03218 548 LISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY--NIKGTPEVYTIAVNSCS 625 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCChHHHHHHHHHHH
Confidence 99999999999999999999976 678999999999999999999999999999999998 88999999999999999
Q ss_pred hcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH
Q 048090 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315 (447)
Q Consensus 236 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 315 (447)
+.|++++|.++|++|.. .|..||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++
T Consensus 626 k~G~~deAl~lf~eM~~---~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ee 702 (1060)
T PLN03218 626 QKGDWDFALSIYDDMKK---KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702 (1060)
T ss_pred hcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 99999999999996554 589999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHH
Q 048090 316 GIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKA 395 (447)
Q Consensus 316 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 395 (447)
|.++|++|... ++.|+..+|+.||.+|++.|++++|.++|++|...|+.| +..+|+.++.+|.+.|++++|.++++++
T Consensus 703 A~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M 780 (1060)
T PLN03218 703 ALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLLSQA 780 (1060)
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999876 899999999999999999999999999999999999977 5666999999999999999999999999
Q ss_pred hhhC-CCchhHHHHHHHHHHh----c-------------------CChHHHHHHHHHHHHcCCCCCCcccccccc
Q 048090 396 LELD-PHNVGIYVMLSNLYAK----F-------------------CMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446 (447)
Q Consensus 396 ~~~~-~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~ 446 (447)
.+.+ .+|..+|+.++..|.+ . +..++|..+|++|.+.|+.||..|+..++.
T Consensus 781 ~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~ 855 (1060)
T PLN03218 781 KEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLG 855 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Confidence 9987 6688889998865432 1 234679999999999999999988877653
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.1e-64 Score=499.90 Aligned_cols=425 Identities=24% Similarity=0.350 Sum_probs=381.0
Q ss_pred cchhHHHhhhhhhhhHHHhhhhhhhhhcccccCCcchHHHhhccCCCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcC
Q 048090 2 VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHG 81 (447)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 81 (447)
+|.++.+.|.. +++.++|+|+.+|+++| +++.|.++|++|++||+.+||.+|.+|++.|++++|+++|++|...|
T Consensus 108 ~~~~~~~~~~~--~~~~~~n~li~~~~~~g---~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g 182 (857)
T PLN03077 108 VCSRALSSHPS--LGVRLGNAMLSMFVRFG---ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG 182 (857)
T ss_pred HHHHHHHcCCC--CCchHHHHHHHHHHhCC---ChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 57777888864 56899999999999999 59999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHH
Q 048090 82 IFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSG 161 (447)
Q Consensus 82 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~ 161 (447)
+.||..||+.++++|+..+++..+.+++..|.+.|+.||..+++.++.+|+++|++++|.++|++|+.+|..+||++|.+
T Consensus 183 ~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~ 262 (857)
T PLN03077 183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISG 262 (857)
T ss_pred CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChH
Q 048090 162 YCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241 (447)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 241 (447)
|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+. |+.||..+|+.++.+|++.|+++
T Consensus 263 ~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~ 340 (857)
T PLN03077 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQMYLSLGSWG 340 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHHHHHhcCCHH
Confidence 9999999999999999999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 048090 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFE 321 (447)
Q Consensus 242 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 321 (447)
+|.++|++| ..||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++
T Consensus 341 ~A~~vf~~m-------~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 341 EAEKVFSRM-------ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred HHHHHHhhC-------CCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence 999999965 4578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhC--
Q 048090 322 WMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD-- 399 (447)
Q Consensus 322 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-- 399 (447)
.+.+. |+.|+..+|+.|+++|++.|++++|.++|++|.+. +..+|+.++.+|.+.|+.++|..+|++|.+..
T Consensus 414 ~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~p 487 (857)
T PLN03077 414 LAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-----DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKP 487 (857)
T ss_pred HHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCC
Confidence 99887 99999999999999999999999999998888653 23335555555555555555555554443211
Q ss_pred ---------------------------------------------------------------CCchhHHHHHHHHHHhc
Q 048090 400 ---------------------------------------------------------------PHNVGIYVMLSNLYAKF 416 (447)
Q Consensus 400 ---------------------------------------------------------------~~~~~~~~~l~~~~~~~ 416 (447)
++|..+|+.++.+|.+.
T Consensus 488 d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~ 567 (857)
T PLN03077 488 NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAH 567 (857)
T ss_pred CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHc
Confidence 33556677777778788
Q ss_pred CChHHHHHHHHHHHHcCCCCCCcccccccc
Q 048090 417 CMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446 (447)
Q Consensus 417 g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~ 446 (447)
|+.++|.++|++|.+.|+.||..|+..++.
T Consensus 568 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 597 (857)
T PLN03077 568 GKGSMAVELFNRMVESGVNPDEVTFISLLC 597 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Confidence 888888888888777777787777776653
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.5e-63 Score=487.55 Aligned_cols=425 Identities=18% Similarity=0.161 Sum_probs=397.9
Q ss_pred hhhhhhhhHHHhhhhhhhhhcccccCCcchHHHhhccCCCCCCc-----cHHHHHHHHHhCCChhhHHHHHHHHHhcCCC
Q 048090 9 TGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPL-----PFNVVISDFCRNGSPLYALKTFSFMHVHGIF 83 (447)
Q Consensus 9 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 83 (447)
.|+...++...|..++..+.++| ++++|.++|++|+.++.. .++.++..|.+.|.+++|+.+|+.|..
T Consensus 362 ~~~~~~~~~~~~~~~y~~l~r~G---~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---- 434 (1060)
T PLN03218 362 GGVSGKRKSPEYIDAYNRLLRDG---RIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---- 434 (1060)
T ss_pred cccCCCCCchHHHHHHHHHHHCc---CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----
Confidence 44445566777888888888877 599999999999765544 456778889999999999999999964
Q ss_pred CchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCC----CCchhhHHHHH
Q 048090 84 LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP----VKNSVCANALL 159 (447)
Q Consensus 84 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~ 159 (447)
||..+|+.++.+|++.|+++.|.++++.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999998 68999999999
Q ss_pred HHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCC
Q 048090 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL 239 (447)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 239 (447)
.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...+.++.||..+|+.++.+|++.|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999987544789999999999999999999
Q ss_pred hHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 048090 240 VTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319 (447)
Q Consensus 240 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 319 (447)
+++|.++|+.|.+ .+.+|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++
T Consensus 595 ldeA~elf~~M~e---~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 595 VDRAKEVYQMIHE---YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred HHHHHHHHHHHHH---cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999996654 4889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhC
Q 048090 320 FEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399 (447)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 399 (447)
|++|.+. |+.|+..+|+.||.+|++.|++++|.++|++|...|+.| +..+|+.|+.+|++.|++++|.+++++|.+.+
T Consensus 672 ~~eM~k~-G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 672 LQDARKQ-GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred HHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 9999887 999999999999999999999999999999999999877 66779999999999999999999999999876
Q ss_pred -CCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCccccccc
Q 048090 400 -PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445 (447)
Q Consensus 400 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~ 445 (447)
.||..+|..++.+|.+.|++++|.+++++|.+.|+.||..+++.++
T Consensus 750 i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLI 796 (1060)
T PLN03218 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 7799999999999999999999999999999999999998887765
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.1e-57 Score=440.50 Aligned_cols=383 Identities=22% Similarity=0.316 Sum_probs=366.0
Q ss_pred CCCccHHHHHHHHHhCCChhhHHHHHHHHHhcC-CCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHH
Q 048090 49 RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHG-IFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSAL 127 (447)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 127 (447)
++..+|+.+|.++.+.|++++|+++|++|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 456789999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHH
Q 048090 128 IDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207 (447)
Q Consensus 128 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 207 (447)
+.+|++.|++++|.++|++|.+||..+||.++.+|++.|++++|+++|++|.+.|+.|+..||..++.+|++.|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048090 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287 (447)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 287 (447)
+++..+.+. |+.||..++++|+.+|++.|++++|.++|+.| ..+|+.+|+.++.+|++.|++++|.++|++
T Consensus 245 ~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m-------~~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 245 QLHCCVLKT--GVVGDTFVSCALIDMYSKCGDIEDARCVFDGM-------PEKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHh--CCCccceeHHHHHHHHHHCCCHHHHHHHHHhC-------CCCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999998 88999999999999999999999999999965 457999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 048090 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS 367 (447)
Q Consensus 288 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 367 (447)
|.+.|+.||..||+.++.+|++.|++++|.+++..|.+. |+.|+..+|+.|+++|+++|++++|.++|++|.+ |
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~- 389 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----K- 389 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----C-
Confidence 999999999999999999999999999999999999888 9999999999999999999999999999999975 3
Q ss_pred chHhHHHHHHHHHhcCCccHHHHHHHHHhhhC-CCchhHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCCccccccc
Q 048090 368 SVSMWGALLSACHDCGKFELGKLAAQKALELD-PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE-KGLKKDVGCSWIEV 445 (447)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~~~ 445 (447)
+..+|+.|+.+|++.|+.++|.++|++|.+.+ .||..+|..++.+|.+.|+.++|.++|+.|.+ .|+.|+..+|..+|
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 56679999999999999999999999999877 67999999999999999999999999999986 69999999988877
Q ss_pred c
Q 048090 446 T 446 (447)
Q Consensus 446 ~ 446 (447)
+
T Consensus 470 ~ 470 (697)
T PLN03081 470 E 470 (697)
T ss_pred H
Confidence 5
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.5e-28 Score=250.37 Aligned_cols=398 Identities=13% Similarity=0.032 Sum_probs=250.4
Q ss_pred HHHhhhhhhhhhcccccCCcchHHHhhccCC---CCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHH
Q 048090 17 IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93 (447)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 93 (447)
+.+++.+...|.+.| +.++|...|++.. +.+...+..+...+...|++++|.+.|+++.+.+ +.+..++..+.
T Consensus 465 ~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 540 (899)
T TIGR02917 465 ASLHNLLGAIYLGKG---DLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA 540 (899)
T ss_pred cHHHHHHHHHHHhCC---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 344555555555444 3555555555432 2333444555555555555555555555555442 22344555555
Q ss_pred HHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCC---CCchhhHHHHHHHHHhcCCHHH
Q 048090 94 TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP---VKNSVCANALLSGYCEAKLWAG 170 (447)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 170 (447)
..+.+.|+.++|..+++++.+.+ +.+...+..++..+...|++++|..+++++. ..+...|..+...+...|++++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 55555555566665555555443 3344455555556666666666666665554 2245556666666666666666
Q ss_pred HHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhh
Q 048090 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLA 250 (447)
Q Consensus 171 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 250 (447)
|...|+++.+.. +.+...+..+..++.+.|++++|...++.+.+. .+.+...+..++..+...|++++|.++++.+
T Consensus 620 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 620 AVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL---KPDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666665543 234445556666666666666666666666654 2334556666666666666666666666655
Q ss_pred hhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCC
Q 048090 251 GHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330 (447)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 330 (447)
... .+.+...+..+...+...|++++|...|+++...+ |+..++..+..++...|++++|.+.++++.+. .+
T Consensus 696 ~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~ 767 (899)
T TIGR02917 696 QKQ----HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HP 767 (899)
T ss_pred Hhh----CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CC
Confidence 443 34455666667777777777777777777777643 44456666777777777777777777777654 24
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHH
Q 048090 331 PGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410 (447)
Q Consensus 331 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 410 (447)
.+...+..+...|...|++++|.+.|+++.+.. |++..++..++..+...|+ .+|...++++++..|.++.++..++
T Consensus 768 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~ 844 (899)
T TIGR02917 768 NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLG 844 (899)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 456677777777777888888888888877765 7777777777777777777 6677777777777777777777777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC
Q 048090 411 NLYAKFCMWDEIGQLRELMKEKGL 434 (447)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~~~~ 434 (447)
.++.+.|++++|.+.++++.+.+.
T Consensus 845 ~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 845 WLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 778888888888888888877543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.9e-28 Score=249.55 Aligned_cols=395 Identities=11% Similarity=0.004 Sum_probs=349.5
Q ss_pred HHHhhhhhhhhhcccccCCcchHHHhhccCC---CCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHH
Q 048090 17 IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93 (447)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 93 (447)
..++..+...+.+.| ++++|...|+.+. +.+..++..+...+.+.|++++|...++++.+.+ +.+...+..+.
T Consensus 499 ~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 574 (899)
T TIGR02917 499 FPAAANLARIDIQEG---NPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALA 574 (899)
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHH
Confidence 556677778888777 5999999998864 4567789999999999999999999999998764 34667788899
Q ss_pred HHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCC---CCchhhHHHHHHHHHhcCCHHH
Q 048090 94 TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP---VKNSVCANALLSGYCEAKLWAG 170 (447)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 170 (447)
..+...|++++|..+++.+.+.. +.+..+|..+..++...|++++|...|+++. ..+...+..+...+...|++++
T Consensus 575 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 575 QYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAK 653 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999998764 6678899999999999999999999998875 3367788999999999999999
Q ss_pred HHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhh
Q 048090 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLA 250 (447)
Q Consensus 171 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 250 (447)
|...++++.+.. +.+..++..+...+...|++++|.++++.+... .+.+...+..+...+...|++++|.+.|+.+
T Consensus 654 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 729 (899)
T TIGR02917 654 AITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ---HPKAALGFELEGDLYLRQKDYPAAIQAYRKA 729 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999998764 446778899999999999999999999999887 3557788889999999999999999999977
Q ss_pred hhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCC
Q 048090 251 GHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330 (447)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 330 (447)
... .|+..++..++.++.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|..+|+++.+. .+
T Consensus 730 ~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p 801 (899)
T TIGR02917 730 LKR-----APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--AP 801 (899)
T ss_pred Hhh-----CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CC
Confidence 653 4555778889999999999999999999998864 447888999999999999999999999999875 25
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHH
Q 048090 331 PGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410 (447)
Q Consensus 331 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 410 (447)
++...+..+...+...|+ ++|+.+++++.... |++..++..++.++...|++++|...++++++.+|.++.++..++
T Consensus 802 ~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~ 878 (899)
T TIGR02917 802 DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA--PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLA 878 (899)
T ss_pred CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 568889999999999999 88999999999875 888888999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 048090 411 NLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~ 431 (447)
.++.+.|++++|.+++++|++
T Consensus 879 ~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 879 LALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHhC
Confidence 999999999999999999863
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=1.9e-24 Score=190.02 Aligned_cols=402 Identities=15% Similarity=0.084 Sum_probs=326.0
Q ss_pred HHHhhhhhhhhhcccccCCcchHHHhhccCC---CCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHH-
Q 048090 17 IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSS- 92 (447)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l- 92 (447)
..+|+.+.+.+...| ++++|+.+++.+. +..+..|..+..++...|+.+.|.+.|....+. .|+.....+-
T Consensus 116 ae~ysn~aN~~kerg---~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~l 190 (966)
T KOG4626|consen 116 AEAYSNLANILKERG---QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHhc---hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcch
Confidence 456777777777776 5999999998764 456788999999999999999999999988874 5655443332
Q ss_pred HHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCCc---hhhHHHHHHHHHhcCCHH
Q 048090 93 LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN---SVCANALLSGYCEAKLWA 169 (447)
Q Consensus 93 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 169 (447)
-..+...|++.+|...|.+.++.. +-=...|..|...+..+|++..|+..|++...-| ...|-.|...|...+.++
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcch
Confidence 233445789999999999888753 3335578888888999999999999999877443 567888999999999999
Q ss_pred HHHHHHHhhhhcCCCC-cHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 048090 170 GGLELVRLMPALGLDY-DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248 (447)
Q Consensus 170 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 248 (447)
+|...|.+.... .| ....+..+...|...|.++.|+..|++.+...| .-...|+.|..++-..|++.+|++.++
T Consensus 270 ~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P---~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 270 RAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP---NFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred HHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC---CchHHHhHHHHHHHhccchHHHHHHHH
Confidence 999999888765 44 456777888888899999999999999998733 346789999999999999999999999
Q ss_pred hhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Q 048090 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD-EVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327 (447)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 327 (447)
+.... .+....+.+.+...|...|.+++|..+|....+ +.|. ...++.|...|-.+|++++|+..+++.+
T Consensus 345 kaL~l----~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal--- 415 (966)
T KOG4626|consen 345 KALRL----CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL--- 415 (966)
T ss_pred HHHHh----CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---
Confidence 87665 555677889999999999999999999999888 5554 4678889999999999999999999998
Q ss_pred CCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHH
Q 048090 328 KLEPG-PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406 (447)
Q Consensus 328 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 406 (447)
.++|+ ...|+.+...|-..|+.+.|.+.+.+.+..+ |.-..+++.|...|...|++.+|++.|+.++++.|+.+.+|
T Consensus 416 rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~ 493 (966)
T KOG4626|consen 416 RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAY 493 (966)
T ss_pred hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhh
Confidence 57888 7889999999999999999999999999877 88888899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCh-------HHHHHHHHHHHHcCCCCCCcc
Q 048090 407 VMLSNLYAKFCMW-------DEIGQLRELMKEKGLKKDVGC 440 (447)
Q Consensus 407 ~~l~~~~~~~g~~-------~~A~~~~~~m~~~~~~p~~~~ 440 (447)
..++.++--..+| ++..++.++-.....-|.++-
T Consensus 494 cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP 534 (966)
T KOG4626|consen 494 CNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHP 534 (966)
T ss_pred hHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCCccCc
Confidence 8888776443333 333344444444445555543
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=8.8e-24 Score=185.89 Aligned_cols=367 Identities=13% Similarity=0.056 Sum_probs=317.4
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhH-HHHHHH
Q 048090 52 LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVG-SALIDL 130 (447)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~ 130 (447)
.+|..+...+-..|++.+|+..++.+.+... -....|..+..++...|+.+.|.+.|.+.++. .|+.... ..+...
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHH
Confidence 4578888899999999999999999998632 25688999999999999999999999999884 5665543 334455
Q ss_pred HHccCChhhHHHHhccCC--CC-chhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCc-HhhHHHHHHHHhcCCcHHHH
Q 048090 131 YAKLLLIHDAELMFDEIP--VK-NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYD-HFTLSALLRACAGLSAAEFG 206 (447)
Q Consensus 131 ~~~~g~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 206 (447)
....|++++|...+.+.. .| =...|..|...+-.+|+...|+..|++..+. .|+ ...|..|...|...+.++.|
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHH
Confidence 667899999988887655 33 3567999999999999999999999999875 454 45789999999999999999
Q ss_pred HHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHH
Q 048090 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286 (447)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 286 (447)
...|.+..... +....++..+...|...|.+|.|++.+++..+. .|.-...|+.|..++-..|++.+|.+.|.
T Consensus 272 vs~Y~rAl~lr---pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~----~P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 272 VSCYLRALNLR---PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL----QPNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred HHHHHHHHhcC---CcchhhccceEEEEeccccHHHHHHHHHHHHhc----CCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 99999998862 336778888999999999999999999988775 44557889999999999999999999999
Q ss_pred HHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 048090 287 AMLMNGTKP-DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG-PEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364 (447)
Q Consensus 287 ~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 364 (447)
+.... .| -....+.|...+...|.++.|..+|....+ +.|. ....+.|...|-..|++++|+..+++.++..
T Consensus 345 kaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~- 418 (966)
T KOG4626|consen 345 KALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK- 418 (966)
T ss_pred HHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-
Confidence 99885 44 467888999999999999999999999884 4665 6778999999999999999999999999865
Q ss_pred CCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCc
Q 048090 365 GSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVG 439 (447)
Q Consensus 365 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 439 (447)
|.-..+++.++..|-..|+.+.|.+.+.+++..+|.-..+++.|+..|..+|+..+|++-++...+ ++||..
T Consensus 419 -P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfp 490 (966)
T KOG4626|consen 419 -PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFP 490 (966)
T ss_pred -chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCc
Confidence 988899999999999999999999999999999999999999999999999999999999999886 667653
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=1.2e-21 Score=188.66 Aligned_cols=363 Identities=14% Similarity=0.000 Sum_probs=275.9
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHcc
Q 048090 55 NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKL 134 (447)
Q Consensus 55 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 134 (447)
......+.+.|++++|+..|++..+ ..|+...|..+..++.+.|++++|.+.++..++.. +.+...+..+..+|...
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 3455667777888888888887766 35666777777777777888888888888877753 33455677777777788
Q ss_pred CChhhHHHHhccCC---------------------------------CCchhhHHHH-----------------------
Q 048090 135 LLIHDAELMFDEIP---------------------------------VKNSVCANAL----------------------- 158 (447)
Q Consensus 135 g~~~~a~~~~~~~~---------------------------------~~~~~~~~~l----------------------- 158 (447)
|++++|+..|.... .++...+..+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 88777765442211 0000000000
Q ss_pred -------HHHH------HhcCCHHHHHHHHHhhhhcC-CCC-cHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCC
Q 048090 159 -------LSGY------CEAKLWAGGLELVRLMPALG-LDY-DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223 (447)
Q Consensus 159 -------~~~~------~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 223 (447)
+... ...+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...++..+... +..
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~---P~~ 364 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD---PRV 364 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCc
Confidence 0000 12357889999999988764 223 44567777888889999999999999999863 234
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048090 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTV 303 (447)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 303 (447)
...|..+...+...|++++|...|+++... .+.+...|..+...+...|++++|...|++..+.. +.+...+..+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~l 439 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKL----NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQL 439 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHH
Confidence 668888999999999999999999987664 45567889999999999999999999999999864 2356777788
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHh-------HHHHH
Q 048090 304 ISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM-------WGALL 376 (447)
Q Consensus 304 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-------~~~l~ 376 (447)
..++.+.|++++|+..|++..+. .+.+...++.+...+...|++++|...|++.+... |..... ++..+
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccHHHHHHHHH
Confidence 88999999999999999999864 23357889999999999999999999999998775 432221 12222
Q ss_pred HHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 377 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
..+...|++++|...++++++.+|.+..++..++.++.+.|++++|++.|++..+.
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33344699999999999999999999999999999999999999999999998763
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=2.7e-21 Score=185.72 Aligned_cols=353 Identities=11% Similarity=-0.032 Sum_probs=282.1
Q ss_pred CcchHHHhhccCCC------CCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHH
Q 048090 35 NLGTLTNCLKFLNP------RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108 (447)
Q Consensus 35 ~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 108 (447)
+|+...-.|...++ .+..-...++..+.+.|++++|..+++........ +...+..++.++...|+++.|.+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~ 98 (656)
T PRK15174 20 DWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQV 98 (656)
T ss_pred chhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHH
Confidence 46666666665542 23344566778889999999999999999887433 345566666777789999999999
Q ss_pred HHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCC---CchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCC
Q 048090 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV---KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY 185 (447)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 185 (447)
++++.+.. |.+...+..+...+...|++++|...|++... .+...+..+...+...|++++|...++.+..... .
T Consensus 99 l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~ 176 (656)
T PRK15174 99 VNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-P 176 (656)
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-C
Confidence 99999874 55677888888999999999999999988763 3577888899999999999999999998876532 2
Q ss_pred cHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhH
Q 048090 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265 (447)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 265 (447)
+...+..+ ..+...|++++|...++.+++. ...++......+..++...|++++|...++++... .+.+...+
T Consensus 177 ~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~--~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~----~p~~~~~~ 249 (656)
T PRK15174 177 RGDMIATC-LSFLNKSRLPEDHDLARALLPF--FALERQESAGLAVDTLCAVGKYQEAIQTGESALAR----GLDGAALR 249 (656)
T ss_pred CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhc--CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCCHHHH
Confidence 33333333 3477889999999999998876 22233444556677889999999999999977664 45567788
Q ss_pred HHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHH
Q 048090 266 TSMLGVYGRNGYFKE----VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG-PEHYSCLV 340 (447)
Q Consensus 266 ~~l~~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~ 340 (447)
..+...+...|++++ |...|++..+.. +.+...+..+...+...|++++|...++++... .|+ ...+..+.
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La 325 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 889999999999986 899999998853 235678889999999999999999999999864 454 66778888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCch
Q 048090 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403 (447)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 403 (447)
.++.+.|++++|...++++...+ |.+...+..++.++...|++++|...++++++..|.+.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 99999999999999999999876 77666566678889999999999999999999987743
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=1.4e-21 Score=200.40 Aligned_cols=381 Identities=9% Similarity=0.018 Sum_probs=244.3
Q ss_pred CCcchHHHhhccCC---CCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCC-chhhH------------HHHHHHhc
Q 048090 34 KNLGTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFL-DTYAL------------CSSLTAST 97 (447)
Q Consensus 34 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~------------~~ll~~~~ 97 (447)
|++++|...|++.. +.++..+..+..++.+.|++++|...|++..+..... ....+ ......+.
T Consensus 283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 36888888887653 4567778888888889999999999998887753221 11111 11233566
Q ss_pred cCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCC---CchhhHHHHHHHHHhcCCHHHHHHH
Q 048090 98 SVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV---KNSVCANALLSGYCEAKLWAGGLEL 174 (447)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 174 (447)
+.|++++|...++++++.. +.+...+..+..++...|++++|++.|++... .+...+..+...|. .++.++|..+
T Consensus 363 ~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~ 440 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAF 440 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHH
Confidence 7888999999999888864 44566777788888888999999988888762 24455556666553 4567777777
Q ss_pred HHhhhhcCCC--------CcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHH
Q 048090 175 VRLMPALGLD--------YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV 246 (447)
Q Consensus 175 ~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 246 (447)
++.+...... .....+..+...+...|++++|.+.+++.++.. +.+...+..+...|.+.|++++|...
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~---P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD---PGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7665432100 001223445566677788888888888888763 23566777788888888888888888
Q ss_pred HHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHhccCcHHHHH
Q 048090 247 FNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV---------AFVTVISACSHTGQVKLGI 317 (447)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---------~~~~ll~~~~~~~~~~~a~ 317 (447)
++++... .+.+...+..+...+...++.++|...++.+......++.. .+..+...+...|+.++|.
T Consensus 518 l~~al~~----~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 518 MRRLAQQ----KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHc----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 8866543 33344445445555566777777777776653322111111 1223344555666666666
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 048090 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE 397 (447)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 397 (447)
.+++. .+.+...+..+...+.+.|++++|+..|++.++.. |++..++..++..+...|++++|...++++.+
T Consensus 594 ~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 594 ALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 66551 13344455556666666666666666666666654 66666666666666666666666666666666
Q ss_pred hCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 398 LDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 398 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
..|++..++..++.++...|++++|.++++++..
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 6666666666666666666666666666666654
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=4.7e-21 Score=196.44 Aligned_cols=400 Identities=10% Similarity=0.001 Sum_probs=313.6
Q ss_pred hHHHhhhhhhhhhcccccCCcchHHHhhccCCC--CCC---ccHHH------------HHHHHHhCCChhhHHHHHHHHH
Q 048090 16 LIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP--RNP---LPFNV------------VISDFCRNGSPLYALKTFSFMH 78 (447)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~~------------l~~~~~~~~~~~~a~~~~~~m~ 78 (447)
|..++..|...|.+.| +.++|...|++... |+. ..|.. ....+.+.|++++|...|++..
T Consensus 302 ~~~a~~~Lg~~~~~~g---~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al 378 (1157)
T PRK11447 302 DSEALGALGQAYSQQG---DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR 378 (1157)
T ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4677888888888887 59999999987643 221 12222 2346778999999999999999
Q ss_pred hcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCCc-------
Q 048090 79 VHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN------- 151 (447)
Q Consensus 79 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------- 151 (447)
+.. +.+...+..+...+...|++++|.+.|+++++.. +.+...+..+...+. .++.++|..+++.+....
T Consensus 379 ~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~ 455 (1157)
T PRK11447 379 QVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDI 455 (1157)
T ss_pred HhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHH
Confidence 864 3356677788889999999999999999999864 445566777777774 467899999998876321
Q ss_pred -----hhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhH
Q 048090 152 -----SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226 (447)
Q Consensus 152 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 226 (447)
...+..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|...++++.+.. +.+...
T Consensus 456 ~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~---P~~~~~ 531 (1157)
T PRK11447 456 ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK---PNDPEQ 531 (1157)
T ss_pred HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHH
Confidence 2235566778889999999999999998864 3356677788889999999999999999998863 335556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcch---------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 048090 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV---------VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297 (447)
Q Consensus 227 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 297 (447)
+..+...+...++.++|...++.+... ...++. ..+......+...|+.++|..+++. .+++.
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~---~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~ 603 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRA---QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPST 603 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCch---hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCc
Confidence 666666778899999999999865321 111111 1123456778899999999999882 24456
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHH
Q 048090 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377 (447)
Q Consensus 298 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~ 377 (447)
..+..+...+.+.|++++|+..|+++.+. -+.+...+..++..|...|++++|++.++.+.... |++..++..+..
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~--p~~~~~~~~la~ 679 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA--NDSLNTQRRVAL 679 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCChHHHHHHHH
Confidence 67778888999999999999999999865 23358889999999999999999999999988765 888888899999
Q ss_pred HHHhcCCccHHHHHHHHHhhhCCCch------hHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCC
Q 048090 378 ACHDCGKFELGKLAAQKALELDPHNV------GIYVMLSNLYAKFCMWDEIGQLRELMKE-KGLKKD 437 (447)
Q Consensus 378 ~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~p~ 437 (447)
++...|++++|.++++++++..|+++ .++..++..+...|++++|++.|++... .|+.|+
T Consensus 680 ~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 680 AWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 99999999999999999998765432 4667778899999999999999998864 456554
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=7.1e-22 Score=181.10 Aligned_cols=296 Identities=12% Similarity=0.006 Sum_probs=200.1
Q ss_pred HHccCChhhHHHHhccCCC---CchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCc---HhhHHHHHHHHhcCCcHH
Q 048090 131 YAKLLLIHDAELMFDEIPV---KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYD---HFTLSALLRACAGLSAAE 204 (447)
Q Consensus 131 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 204 (447)
+...|++++|...|+++.. .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+.+.|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 3445555555555555542 1334556666666666666666666666655321111 134556666666777777
Q ss_pred HHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcc----hhhHHHHHHHHHhcCCHHH
Q 048090 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD----VVLWTSMLGVYGRNGYFKE 280 (447)
Q Consensus 205 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 280 (447)
.|..+|+.+.+. .+.+..++..++..+.+.|++++|.+.++.+... +..+. ...+..+...+.+.|++++
T Consensus 125 ~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 125 RAEELFLQLVDE---GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL---GGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred HHHHHHHHHHcC---CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 777777776654 2335566677777777777777777777755442 11111 1234556667778888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHH
Q 048090 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG--PEHYSCLVDLLCRAGELDKAWKLINE 358 (447)
Q Consensus 281 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 358 (447)
|...|+++.+.. +.+...+..+...+.+.|++++|.++++++... .|+ ..++..++.+|...|++++|...+++
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888887653 224556777778888888888888888888754 333 45677888888899999999999998
Q ss_pred HHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCC
Q 048090 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAK---FCMWDEIGQLRELMKEKGLK 435 (447)
Q Consensus 359 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~ 435 (447)
+.+.. |+.. .+..++..+.+.|++++|..+++++++..|++. .+..++..+.. .|+.++++.++++|.+.++.
T Consensus 275 ~~~~~--p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 275 ALEEY--PGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHHhC--CCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 88775 6544 458888888899999999999998888887766 44445545443 55888899999999888888
Q ss_pred CCCcc
Q 048090 436 KDVGC 440 (447)
Q Consensus 436 p~~~~ 440 (447)
|++..
T Consensus 351 ~~p~~ 355 (389)
T PRK11788 351 RKPRY 355 (389)
T ss_pred CCCCE
Confidence 88754
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.6e-21 Score=178.80 Aligned_cols=297 Identities=15% Similarity=0.063 Sum_probs=164.6
Q ss_pred HHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhH
Q 048090 61 FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140 (447)
Q Consensus 61 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 140 (447)
+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++..
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~------------------ 105 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ------------------ 105 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH------------------
Confidence 344556666666666665542 1233445555555555566666666555555432111000
Q ss_pred HHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcC
Q 048090 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220 (447)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 220 (447)
....+..+...|.+.|++++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+..+..
T Consensus 106 ----------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 174 (389)
T PRK11788 106 ----------RLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS 174 (389)
T ss_pred ----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc
Confidence 01234455555556666666666666655432 2344455556666666666666666666665542110
Q ss_pred CC--ChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 048090 221 GN--DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298 (447)
Q Consensus 221 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 298 (447)
.. ....+..+...+.+.|++++|...|+++... .+.+...+..+...+.+.|++++|.++++++.+.+......
T Consensus 175 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 250 (389)
T PRK11788 175 LRVEIAHFYCELAQQALARGDLDAARALLKKALAA----DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSE 250 (389)
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH----CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHH
Confidence 00 0113344555666666677776666655443 23344556666666677777777777777766543222234
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHH
Q 048090 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378 (447)
Q Consensus 299 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~ 378 (447)
++..++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+.. |++.. +..++..
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--P~~~~-~~~l~~~ 324 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRH--PSLRG-FHRLLDY 324 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--cCHHH-HHHHHHH
Confidence 5566666677777777777777766543 4555555666666777777777777777666654 54443 5555554
Q ss_pred HHh---cCCccHHHHHHHHHhh
Q 048090 379 CHD---CGKFELGKLAAQKALE 397 (447)
Q Consensus 379 ~~~---~g~~~~a~~~~~~~~~ 397 (447)
+.. .|+.+++..+++++++
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hhhccCCccchhHHHHHHHHHH
Confidence 443 3466666666666665
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=9.9e-21 Score=181.85 Aligned_cols=331 Identities=9% Similarity=-0.053 Sum_probs=274.8
Q ss_pred hhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCC---CCchhhHHHHHHHHH
Q 048090 87 YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP---VKNSVCANALLSGYC 163 (447)
Q Consensus 87 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~ 163 (447)
.-...++..+.+.|+++.|..+++..+... +-+...+..++.+....|++++|...|+++. +.+...+..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 345667778889999999999999999875 4445556666677778999999999999986 235677888999999
Q ss_pred hcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHH
Q 048090 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKA 243 (447)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 243 (447)
..|++++|...+++..+.. +.+...+..+..++...|++++|...++.+....| .+...+..+ ..+...|++++|
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P---~~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP---PRGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC---CCHHHHHHH-HHHHHcCCHHHH
Confidence 9999999999999998863 34566788889999999999999999998887632 233344333 347889999999
Q ss_pred HHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH----HHHH
Q 048090 244 LQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL----GIEY 319 (447)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~ 319 (447)
...++.+... ...++...+..+..++.+.|++++|+..++++.+.. +.+...+..+...+...|++++ |...
T Consensus 197 ~~~~~~~l~~---~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 197 HDLARALLPF---FALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHhc---CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 9999965443 122334455566788899999999999999999864 3356778888999999999986 8999
Q ss_pred HHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhh
Q 048090 320 FEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398 (447)
Q Consensus 320 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 398 (447)
|+++... .| +...+..+...+.+.|++++|...+++..... |++..++..+..++.+.|++++|...++++.+.
T Consensus 273 ~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 273 WRHALQF---NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999854 45 47788999999999999999999999999876 888988999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 399 DPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
.|.+...+..++.++...|++++|+..|++..+.
T Consensus 348 ~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 348 KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9988877777788999999999999999998764
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=1.2e-20 Score=185.08 Aligned_cols=398 Identities=7% Similarity=-0.061 Sum_probs=300.9
Q ss_pred HhhhhhhhhhcccccCCcchHHHhhccCCC---CCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHH
Q 048090 19 FQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95 (447)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 95 (447)
.-+-.+......| +.++|+.++....+ .+...+..+...+...|++++|.++|++..+.. +.+...+..+...
T Consensus 17 ~~~d~~~ia~~~g---~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~ 92 (765)
T PRK10049 17 QIADWLQIALWAG---QDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3344555555566 58899999988654 333458999999999999999999999998863 3346667788888
Q ss_pred hccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCC--C-chhhHHHHHHHHHhcCCHHHHH
Q 048090 96 STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV--K-NSVCANALLSGYCEAKLWAGGL 172 (447)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~ 172 (447)
+...|+.++|...++++++.. +.+.. +..+..++...|+.++|+..+++... | +...+..+...+...+..+.|+
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence 899999999999999999873 55566 88888999999999999999998863 3 5666677888888999999999
Q ss_pred HHHHhhhhcCCCCcH------hhHHHHHHHHh-----cCCcH---HHHHHHHHHHHHhhhcCCCChhHH----HHHHHHH
Q 048090 173 ELVRLMPALGLDYDH------FTLSALLRACA-----GLSAA---EFGRQVHAYMIRKCCNLGNDVFMQ----SSLIEMY 234 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~----~~l~~~~ 234 (447)
+.++.... .|+. .....++.... ..+++ ++|.+.++.+.+..+..+.+...+ ...+..+
T Consensus 171 ~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 171 GAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 99987764 2331 11122222221 22234 778888888886522221111111 1113345
Q ss_pred HhcCChHHHHHHHHhhhhhcccCC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhcc
Q 048090 235 GKCGLVTKALQVFNLAGHRLEGEI-NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP---DEVAFVTVISACSHT 310 (447)
Q Consensus 235 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~ 310 (447)
...|++++|+..|+.+... +. .|+. .-..+..+|...|++++|+..|+++.+..... .......+..++...
T Consensus 248 l~~g~~~eA~~~~~~ll~~---~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAE---GQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHhhhHHHHHHHHHHhhcc---CCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 6779999999999976543 21 1221 22225778999999999999999987653211 134566677788999
Q ss_pred CcHHHHHHHHHHHHHhcC----------CCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHH
Q 048090 311 GQVKLGIEYFEWMVHDYK----------LEPG---PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377 (447)
Q Consensus 311 ~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~ 377 (447)
|++++|..+++.+..... -.|+ ...+..+...+...|++++|+++++++.... |.+...+..++.
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--P~n~~l~~~lA~ 401 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA--PGNQGLRIDYAS 401 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 999999999999986411 0122 2345567778899999999999999999876 999999999999
Q ss_pred HHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 378 ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 378 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
.+...|++++|+..++++++..|++...+..++..+...|++++|+.+++++.+
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=2e-19 Score=173.41 Aligned_cols=364 Identities=8% Similarity=-0.097 Sum_probs=281.7
Q ss_pred hhhhhhhcccccCCcchHHHhhccCC--CCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccC
Q 048090 22 RLMLPYTTCRHKKNLGTLTNCLKFLN--PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSV 99 (447)
Q Consensus 22 ~l~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 99 (447)
..-..|.+.| +++.|+..|++.. .|++..|..+..+|.+.|++++|++.++...+.. +.+...+..+..++...
T Consensus 132 ~~G~~~~~~~---~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 132 EKGNKAYRNK---DFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHcC---CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 3444555555 6999999999854 4677889999999999999999999999998864 22566888889999999
Q ss_pred CchhHHHHHHHHHHHcC-----------------------------CCCchhhHHHHHH---------------------
Q 048090 100 KDARFGKQVQAHVTKSG-----------------------------WLSSVFVGSALID--------------------- 129 (447)
Q Consensus 100 ~~~~~a~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~--------------------- 129 (447)
|++++|...+......+ .+++...+..+..
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 99999986554432211 0111001110000
Q ss_pred ---------HH------HccCChhhHHHHhccCCC-----C-chhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHh
Q 048090 130 ---------LY------AKLLLIHDAELMFDEIPV-----K-NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF 188 (447)
Q Consensus 130 ---------~~------~~~g~~~~a~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 188 (447)
.. ...+++++|.+.|++... | ....|+.+...+...|++++|+..+++..+.. +....
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHH
Confidence 00 122567888888877652 2 45568888888999999999999999998763 23356
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHH
Q 048090 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268 (447)
Q Consensus 189 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 268 (447)
.|..+...+...|++++|...++.+++.. +.+..++..+...+...|++++|...|++.... .+.+...+..+
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l----~P~~~~~~~~l 439 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN---SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL----DPDFIFSHIQL 439 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CccCHHHHHHH
Confidence 78888888999999999999999998873 346788999999999999999999999987765 45567788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCCh-h-------hHHHHH
Q 048090 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP-E-------HYSCLV 340 (447)
Q Consensus 269 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~-------~~~~l~ 340 (447)
..++.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...|++.... .|+. . .++...
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHH
Confidence 999999999999999999998753 335778888999999999999999999998753 3321 1 112222
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCch
Q 048090 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403 (447)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 403 (447)
..+...|++++|.+++++.+..+ |++..++..++..+...|++++|...|+++.++.+...
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 33445799999999999998876 88888899999999999999999999999999876533
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=4.4e-18 Score=167.49 Aligned_cols=221 Identities=10% Similarity=0.032 Sum_probs=172.5
Q ss_pred CcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHH
Q 048090 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280 (447)
Q Consensus 201 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 280 (447)
++.++|...+.+.... .|+......+...+...|++++|...|+++.. .+|+...+..+..++.+.|+.++
T Consensus 490 ~~~~eAi~a~~~Al~~----~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~-----~~p~~~a~~~la~all~~Gd~~e 560 (987)
T PRK09782 490 TLPGVALYAWLQAEQR----QPDAWQHRAVAYQAYQVEDYATALAAWQKISL-----HDMSNEDLLAAANTAQAAGNGAA 560 (987)
T ss_pred CCcHHHHHHHHHHHHh----CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhc-----cCCCcHHHHHHHHHHHHCCCHHH
Confidence 4445566655555554 23433333445555678888888888886533 34444556667778888899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048090 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360 (447)
Q Consensus 281 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 360 (447)
|...+++..+.. +++...+..+.......|++++|...+++..+. .|+...|..+..++.+.|++++|+..+++.+
T Consensus 561 A~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL 636 (987)
T PRK09782 561 RDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAAL 636 (987)
T ss_pred HHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999998888754 223333334444455669999999999999854 6788889999999999999999999999999
Q ss_pred hCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC
Q 048090 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438 (447)
Q Consensus 361 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 438 (447)
... |++..++..++.++...|++++|...++++++..|.++.++..++.++...|++++|+..+++..+ ..|+.
T Consensus 637 ~l~--Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~ 710 (987)
T PRK09782 637 ELE--PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQ 710 (987)
T ss_pred HhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCC
Confidence 987 999999999999999999999999999999999999999999999999999999999999999986 44554
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=5.2e-18 Score=163.69 Aligned_cols=390 Identities=10% Similarity=0.006 Sum_probs=273.5
Q ss_pred CCcchHHHhhccCCCCCCc---cHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHH
Q 048090 34 KNLGTLTNCLKFLNPRNPL---PFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQA 110 (447)
Q Consensus 34 ~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 110 (447)
|+++.|+..|.+....++. ....++..+...|+.++|+..+++.... ..........+...+...|++++|.++|+
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~ 126 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALALWQ 126 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3688888888876543332 1237777777888888888888888721 11222333333556777788888888888
Q ss_pred HHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHh--cCCHHHHHHHHHhhhhcCCCCcHh
Q 048090 111 HVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE--AKLWAGGLELVRLMPALGLDYDHF 188 (447)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~ 188 (447)
++.+.. |-++..+..++..+...++.++|++.++++.+.++.....++.++.. .++..+|++.++++.+.. +-+..
T Consensus 127 kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e 204 (822)
T PRK14574 127 SSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEE 204 (822)
T ss_pred HHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHH
Confidence 888864 44466667777888888888888888888875443332224344443 455555888888887763 22344
Q ss_pred hHHHHHHHHhcCCcHH------------------------------------------------HHHHHHHHHHHhhhcC
Q 048090 189 TLSALLRACAGLSAAE------------------------------------------------FGRQVHAYMIRKCCNL 220 (447)
Q Consensus 189 ~~~~l~~~~~~~~~~~------------------------------------------------~a~~~~~~~~~~~~~~ 220 (447)
.+..+..++.+.|-.. .|..-++.+...-+..
T Consensus 205 ~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~ 284 (822)
T PRK14574 205 VLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKD 284 (822)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCC
Confidence 4444444444333322 2333333333321112
Q ss_pred CCChh----HHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---
Q 048090 221 GNDVF----MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT--- 293 (447)
Q Consensus 221 ~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--- 293 (447)
++... ...-.+-++...|+..++++.|+.+... +.+....+-..+..+|...+++++|+.+|+.+.....
T Consensus 285 p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~---~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~ 361 (822)
T PRK14574 285 PEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE---GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF 361 (822)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc---CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc
Confidence 22211 2223455677889999999999966432 3333445667889999999999999999999876431
Q ss_pred --CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC----------CCCC---hhhHHHHHHHHHHcCCHHHHHHHHHH
Q 048090 294 --KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK----------LEPG---PEHYSCLVDLLCRAGELDKAWKLINE 358 (447)
Q Consensus 294 --~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 358 (447)
.++......|.-++..++++++|..+++++.+... -.|+ ...+..++..+...|++.+|++.+++
T Consensus 362 ~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~ 441 (822)
T PRK14574 362 RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLED 441 (822)
T ss_pred CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22344457788899999999999999999976311 0122 23345567778899999999999999
Q ss_pred HHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 359 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
+.... |.+......+...+...|.+.+|+..++.+....|.+..+....+.++...|++++|..+.+.+..
T Consensus 442 l~~~a--P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 442 LSSTA--PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 98877 999999999999999999999999999999999999999999999999999999999988877765
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=2.4e-18 Score=168.96 Aligned_cols=377 Identities=9% Similarity=-0.046 Sum_probs=285.6
Q ss_pred HHHhhhhhhhhhcccccCCcchHHHhhcc---CCCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHH
Q 048090 17 IIFQSRLMLPYTTCRHKKNLGTLTNCLKF---LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93 (447)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 93 (447)
...+..+..++.+.| ++++|..+|++ ..|.++..+..+...+...|++++|+..+++..+.. +.+.. +..+.
T Consensus 49 a~~~~~lA~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la 123 (765)
T PRK10049 49 ARGYAAVAVAYRNLK---QWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALA 123 (765)
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHH
Confidence 456788888888887 59999999998 445667788899999999999999999999998863 33455 87888
Q ss_pred HHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCCchh--------hHHHHHHHHHh-
Q 048090 94 TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV--------CANALLSGYCE- 164 (447)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------~~~~l~~~~~~- 164 (447)
.++...|+.++|...++++.+.. |.+...+..+...+...+..++|++.++.... ++. ....++.....
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~ 201 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMP 201 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhccc
Confidence 88999999999999999999964 44566667788888889999999999988775 211 12222332221
Q ss_pred ----cCCH---HHHHHHHHhhhhc-CCCCcHh-hHH----HHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHH
Q 048090 165 ----AKLW---AGGLELVRLMPAL-GLDYDHF-TLS----ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231 (447)
Q Consensus 165 ----~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 231 (447)
.+++ ++|++.++.+.+. ...|+.. .+. ..+.++...+++++|...|+.+.+.++.. |+ .....+.
T Consensus 202 ~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~-P~-~a~~~la 279 (765)
T PRK10049 202 TRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQII-PP-WAQRWVA 279 (765)
T ss_pred ccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCC-CH-HHHHHHH
Confidence 2234 7788888888754 1223221 111 11334567799999999999998872211 22 1223357
Q ss_pred HHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC---H
Q 048090 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT-----------KPD---E 297 (447)
Q Consensus 232 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-----------~p~---~ 297 (447)
.+|...|++++|+..|+++.................+..++.+.|++++|..+++.+..... .|+ .
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 78999999999999999765421000011134566677788999999999999999987531 123 2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHH
Q 048090 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377 (447)
Q Consensus 298 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~ 377 (447)
..+..+...+...|++++|++.++++... .+.+...+..+...+...|++++|++.+++.+... |++...+..++.
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~ 435 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAW 435 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHH
Confidence 34556777888999999999999999865 34458888999999999999999999999999877 999999999999
Q ss_pred HHHhcCCccHHHHHHHHHhhhCCCchhHH
Q 048090 378 ACHDCGKFELGKLAAQKALELDPHNVGIY 406 (447)
Q Consensus 378 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 406 (447)
.+...|++++|..+++++++..|+++.+.
T Consensus 436 ~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 436 TALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999999988544
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=1.3e-16 Score=154.02 Aligned_cols=371 Identities=13% Similarity=-0.010 Sum_probs=279.5
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhcCCCCch--hhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHcc
Q 048090 57 VISDFCRNGSPLYALKTFSFMHVHGIFLDT--YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKL 134 (447)
Q Consensus 57 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 134 (447)
-+-...+.|++..|++.|++..+. .|+. ..+ .++..+...|+.++|+..+++..... +........+...+...
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHc
Confidence 334457899999999999999886 3443 233 77788888899999999999998211 22233333345688889
Q ss_pred CChhhHHHHhccCCC--C-chhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHH
Q 048090 135 LLIHDAELMFDEIPV--K-NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211 (447)
Q Consensus 135 g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 211 (447)
|++++|+++|+++.+ | ++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|.+.++
T Consensus 116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 999999999999873 2 5667778888999999999999999999876 5666666555555555667767999999
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhh----------------------------------------
Q 048090 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAG---------------------------------------- 251 (447)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------------------------------------- 251 (447)
++.+.. +.+...+..+..++.+.|-...|.++..+-.
T Consensus 194 kll~~~---P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 194 EAVRLA---PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHhC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 999983 3366677777777777776666665554211
Q ss_pred -----hhcc--cCCCcchhhH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048090 252 -----HRLE--GEINKDVVLW----TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320 (447)
Q Consensus 252 -----~~~~--~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 320 (447)
.... ...|+....| .-.+-++...|++.++++.|+.+...+......+-..+.++|...+++++|..++
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 1000 0112221122 2234567788999999999999999887666778889999999999999999999
Q ss_pred HHHHHhcC----CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-------------CCCchHhHHHHHHHHHhcC
Q 048090 321 EWMVHDYK----LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH-------------GSSSVSMWGALLSACHDCG 383 (447)
Q Consensus 321 ~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------~p~~~~~~~~l~~~~~~~g 383 (447)
+.+....+ ..++......|.-+|...+++++|..+++++.+..- .|+-...+..++..+.-.|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 99976522 122344457889999999999999999999987321 1222334566788899999
Q ss_pred CccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC
Q 048090 384 KFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438 (447)
Q Consensus 384 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 438 (447)
++.+|++.++++....|.|..+...++..+...|++.+|.+.++.... ..|+.
T Consensus 431 dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~ 483 (822)
T PRK14574 431 DLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRS 483 (822)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCcc
Confidence 999999999999999999999999999999999999999999977664 45653
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.85 E-value=7.3e-17 Score=159.03 Aligned_cols=388 Identities=10% Similarity=-0.041 Sum_probs=291.9
Q ss_pred HhhhhhhhhhcccccCCcchHHHhhccCCCCCCccHHHHHHHH--HhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHh
Q 048090 19 FQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF--CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTAS 96 (447)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 96 (447)
+.-.++..+.+.+ +++-|..+.+ ..+.++. ..++.. ...+...++...+..|-+.. +-+......+--..
T Consensus 315 ~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~ 386 (987)
T PRK09782 315 VVGATLPVLLKEG---QYDAAQKLLA-TLPANEM---LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQL 386 (987)
T ss_pred HHHHHHHHHHhcc---HHHHHHHHhc-CCCcchH---HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3344577777777 4666666643 3333442 233322 23467778888888887652 22445555555556
Q ss_pred ccCCchhHHHHHHHHHHHc-C-CCCchhhHHHHHHHHHccCC---hhhHHHHhccC------------------------
Q 048090 97 TSVKDARFGKQVQAHVTKS-G-WLSSVFVGSALIDLYAKLLL---IHDAELMFDEI------------------------ 147 (447)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~------------------------ 147 (447)
.+.|+.++|.++++..... + -.++.....-++..|.+.+. ..++..+-..+
T Consensus 387 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (987)
T PRK09782 387 MQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVR 466 (987)
T ss_pred HHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHH
Confidence 7889999999999998873 1 12234445577888888776 33443332111
Q ss_pred -C---CC--chhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCC
Q 048090 148 -P---VK--NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG 221 (447)
Q Consensus 148 -~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 221 (447)
. .+ +...|..+..++.. +++++|+..+.+.... .|+......+...+...|++++|...++++... +
T Consensus 467 al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~----~ 539 (987)
T PRK09782 467 LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH----D 539 (987)
T ss_pred hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc----C
Confidence 1 12 45667778777776 8999999988887765 466555444555567899999999999997654 3
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048090 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301 (447)
Q Consensus 222 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 301 (447)
|+...+..+..++.+.|++++|...++..... .+.+...+..+.......|++++|...+++..+. .|+...+.
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l----~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~ 613 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQR----GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYV 613 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 44555677788899999999999999977654 2333334444444555669999999999999984 56788899
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHH
Q 048090 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380 (447)
Q Consensus 302 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 380 (447)
.+..++.+.|++++|...+++.... .| +...+..+..++...|++++|+..+++.++.. |++..++..+..++.
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--P~~~~a~~nLA~al~ 688 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL--PDDPALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 9999999999999999999999854 55 47788888899999999999999999999987 999999999999999
Q ss_pred hcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 381 DCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 381 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
..|++++|...++++++..|++..+.....+...+..+++.|.+.+++....
T Consensus 689 ~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 689 RLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999988887653
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.3e-15 Score=141.61 Aligned_cols=386 Identities=11% Similarity=0.070 Sum_probs=205.5
Q ss_pred cchHHHhhccC---CCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCC--CchhhHHHHHHHhccCCchhHHHHHHH
Q 048090 36 LGTLTNCLKFL---NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIF--LDTYALCSSLTASTSVKDARFGKQVQA 110 (447)
Q Consensus 36 ~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~ 110 (447)
+..+..++... .+.||++.+.|...|.-.|+++.++.+...+...... .-..+|..+.+++...|++++|..+|.
T Consensus 252 ~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 44455554432 3567777777777777777777777777777553211 123456677777777777777777777
Q ss_pred HHHHcCCCCch--hhHHHHHHHHHccCChhhHHHHhccCCC---CchhhHHHHHHHHHhcC----CHHHHHHHHHhhhhc
Q 048090 111 HVTKSGWLSSV--FVGSALIDLYAKLLLIHDAELMFDEIPV---KNSVCANALLSGYCEAK----LWAGGLELVRLMPAL 181 (447)
Q Consensus 111 ~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~ 181 (447)
+..+.. ++. ..+..+...+.+.|+++.+...|+.+.. .+..+...|...|...+ ..+.|..++.+..+.
T Consensus 332 ~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 332 ESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred HHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 766543 333 2334566677777777777777766642 23444444444444443 334455554444433
Q ss_pred CCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHH----HhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccC
Q 048090 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI----RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257 (447)
Q Consensus 182 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 257 (447)
- +.|...|..+...+....-+. +...|..+. .. +..+.+...|.+...+...|++.+|...|+.........
T Consensus 410 ~-~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~--~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 410 T-PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESK--GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred c-cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHc--CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 2 234444444444443322222 233333322 12 222444555555555555555555555555443331111
Q ss_pred CC------cchhh-HHH--------------------------HHHHHHhc-------CCHHHHHHHHHHHHhCC-C---
Q 048090 258 IN------KDVVL-WTS--------------------------MLGVYGRN-------GYFKEVIKLYEAMLMNG-T--- 293 (447)
Q Consensus 258 ~~------~~~~~-~~~--------------------------l~~~~~~~-------g~~~~a~~~~~~m~~~~-~--- 293 (447)
.. +++.+ ||. .|.+|.+. ++..+|...++...... -
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ 565 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPN 565 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcH
Confidence 11 11111 111 01111111 23334444444333211 1
Q ss_pred -------------------------------CCCHHHHHHHHHHHhc------------cCcHHHHHHHHHHHHHhcCCC
Q 048090 294 -------------------------------KPDEVAFVTVISACSH------------TGQVKLGIEYFEWMVHDYKLE 330 (447)
Q Consensus 294 -------------------------------~p~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~ 330 (447)
.+|..+...|...|.. .+..++|++.|.++++. -+
T Consensus 566 arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dp 643 (1018)
T KOG2002|consen 566 ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DP 643 (1018)
T ss_pred HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Cc
Confidence 1233333333332221 12345566666666542 23
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhC--CCchhHHHH
Q 048090 331 PGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD--PHNVGIYVM 408 (447)
Q Consensus 331 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~ 408 (447)
.|...-+-+.-.++..|++.+|..+|....+... +...+|..++.+|...|++..|.+.|+..++.. .+++.+...
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~--~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREATS--DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHHHHh--hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 3556666666667777777777777777766642 244457777777777777777777777776654 336667777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 048090 409 LSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 409 l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
|++++.+.|.+.+|.+.....+.
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 77777777777777776666554
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=1.8e-14 Score=122.42 Aligned_cols=251 Identities=14% Similarity=0.132 Sum_probs=134.1
Q ss_pred hhccCCCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCch
Q 048090 42 CLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121 (447)
Q Consensus 42 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 121 (447)
++-+..+.++.+|..+|.++++-...+.|.++|++-.....+.+..+||.+|.+-.-.. ...+..+|+...+.||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCch
Confidence 33344556777788888888887777888888877777666777778887777643222 26677777777777888
Q ss_pred hhHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCC
Q 048090 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLS 201 (447)
Q Consensus 122 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 201 (447)
.|+|+++.+.++.|+++.|... |.+++.+|++.|+.|...+|..+|..+++.+
T Consensus 274 ~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLsSyh~iik~f~re~ 326 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLSSYHLIIKNFKRES 326 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchhhHHHHHHHhcccC
Confidence 8888877777777777665432 3344445555555555555555555444444
Q ss_pred cHH-HHHHHHHHHHHhhh--cC----CCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccC-CCcch---hhHHHHHH
Q 048090 202 AAE-FGRQVHAYMIRKCC--NL----GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE-INKDV---VLWTSMLG 270 (447)
Q Consensus 202 ~~~-~a~~~~~~~~~~~~--~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~---~~~~~l~~ 270 (447)
+.. .+..++..+...-. .+ +.+...|...+..|.+..+.+.|.++-..+..-.... ++|+. .-|..+..
T Consensus 327 dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~ 406 (625)
T KOG4422|consen 327 DPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFD 406 (625)
T ss_pred CchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHH
Confidence 332 23333333332210 11 1123334444444445555555544443222211000 11211 12334444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 048090 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323 (447)
Q Consensus 271 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 323 (447)
..|+....+....+|+.|.-.-.-|+..+...++++....+.++-.-+++.++
T Consensus 407 licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~ 459 (625)
T KOG4422|consen 407 LICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDS 459 (625)
T ss_pred HHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHH
Confidence 44555555555555555554444455555555555555555555444444444
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.77 E-value=5.1e-18 Score=147.48 Aligned_cols=260 Identities=18% Similarity=0.167 Sum_probs=106.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHh-hHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 048090 157 ALLSGYCEAKLWAGGLELVRLMPALGLDYDHF-TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235 (447)
Q Consensus 157 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 235 (447)
.+...+.+.|++++|++++++......+|+.. -|..+...+...++.+.|...++++...++. ++..+..++.. .
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~---~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA---NPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccc-c
Confidence 34566677778888887775544332123333 3333444555677788888888888776322 44556666666 6
Q ss_pred hcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCcHH
Q 048090 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG-TKPDEVAFVTVISACSHTGQVK 314 (447)
Q Consensus 236 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~ 314 (447)
..+++++|.+++...-. ..++...+..++..+.+.++++++..+++.+.... ..++...|..+...+.+.|+.+
T Consensus 89 ~~~~~~~A~~~~~~~~~-----~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYE-----RDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHH
T ss_pred ccccccccccccccccc-----cccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 77888888877764332 23455666777777888888888888888876532 2346667777778888888888
Q ss_pred HHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHH
Q 048090 315 LGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393 (447)
Q Consensus 315 ~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 393 (447)
+|...+++..+. .| |......++..+...|+.+++.+++....+.. |+++..+..++.++...|+.++|...++
T Consensus 164 ~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 164 KALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp HHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccc
Confidence 888888888865 55 47777788888888888888888888877765 6666778888888888888888888888
Q ss_pred HHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048090 394 KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMK 430 (447)
Q Consensus 394 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 430 (447)
++.+..|.|+.+...++.++...|+.++|.++.++..
T Consensus 239 ~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 239 KALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccccccccccc
Confidence 8888888888888888888888888888888877654
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.76 E-value=1e-14 Score=134.93 Aligned_cols=336 Identities=12% Similarity=0.042 Sum_probs=254.2
Q ss_pred hhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHh---ccCCCCchhhHHHHHHHH
Q 048090 86 TYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF---DEIPVKNSVCANALLSGY 162 (447)
Q Consensus 86 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~---~~~~~~~~~~~~~l~~~~ 162 (447)
........+.....|++++|.+++.+.++.. +.....|..|...|-..|+.+++...+ ..+.+.|...|-.+....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3334444444444599999999999999875 667788999999999999999987765 344466788899999989
Q ss_pred HhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhH----HHHHHHHHHhcC
Q 048090 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM----QSSLIEMYGKCG 238 (447)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g 238 (447)
.+.|.++.|.-.|.+.++.. +++...+-.-...|-+.|+...|...|.++.+..| +.|..- ....++.+...+
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p--~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP--PVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC--chhHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998874 45555555667778889999999999999998732 223222 233456677778
Q ss_pred ChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------------------------
Q 048090 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG-------------------------- 292 (447)
Q Consensus 239 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-------------------------- 292 (447)
+.+.|.+.++.... ..+...+...++.++..|.+...++.|......+....
T Consensus 295 ~~e~a~~~le~~~s--~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~ 372 (895)
T KOG2076|consen 295 ERERAAKALEGALS--KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK 372 (895)
T ss_pred HHHHHHHHHHHHHh--hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence 77888888885433 23344566678888999999999999988888776621
Q ss_pred -CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCch
Q 048090 293 -TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP--GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369 (447)
Q Consensus 293 -~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 369 (447)
..++...+ .+.-++...+..+....+....... .+.| +...|.-+.++|...|++.+|+.++..+...... .+.
T Consensus 373 ~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~-~~~ 449 (895)
T KOG2076|consen 373 ELSYDLRVI-RLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY-QNA 449 (895)
T ss_pred CCCccchhH-hHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc-cch
Confidence 12222221 1222334444444444445545444 4344 4788999999999999999999999999887542 345
Q ss_pred HhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048090 370 SMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMK 430 (447)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 430 (447)
..|..++.+|...|.+++|.+.|++++...|.+..+...|...+.+.|+.++|.++++.+.
T Consensus 450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 450 FVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 5799999999999999999999999999999999999999999999999999999999876
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.76 E-value=5.8e-14 Score=125.48 Aligned_cols=366 Identities=8% Similarity=-0.028 Sum_probs=284.4
Q ss_pred HHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHH----HcCCCCchhhHHHHHHHHHccC
Q 048090 60 DFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT----KSGWLSSVFVGSALIDLYAKLL 135 (447)
Q Consensus 60 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g 135 (447)
++++..-++.|..+++..++. ++.+...|.+....--..|+.+....++...+ ..|+..+...|..=...|-..|
T Consensus 415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 445555566677777776665 55566666666655566666666666655433 3456666666666566666666
Q ss_pred ChhhHHHHhccCC------CCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHH
Q 048090 136 LIHDAELMFDEIP------VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209 (447)
Q Consensus 136 ~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 209 (447)
..--+..+..... +.-..+|+.-...|.+.+.++-|..+|....+. .+-+...|......--..|..+....+
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 6655555554433 113457778888888888999999999888775 233455666666665677899999999
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048090 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289 (447)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 289 (447)
+++.+.. ++.....|......+...|+...|..++..+.+. .+.+...|.+-+.....+.+++.|..+|.+..
T Consensus 573 lqkav~~---~pkae~lwlM~ake~w~agdv~~ar~il~~af~~----~pnseeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 573 LQKAVEQ---CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA----NPNSEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHh---CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh----CCCcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 9999987 5556777888888899999999999999877664 55578889999999999999999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCch
Q 048090 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369 (447)
Q Consensus 290 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 369 (447)
. ..|+...|.--+...-..++.++|.+++++.++. ++.-...|..+.+.+.+.++++.|.+.|..-.+.- |..+
T Consensus 646 ~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c--P~~i 719 (913)
T KOG0495|consen 646 S--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC--PNSI 719 (913)
T ss_pred c--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC--CCCc
Confidence 7 4678888877777777789999999999999875 23347889999999999999999999998877665 9899
Q ss_pred HhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCcccc
Q 048090 370 SMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSW 442 (447)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 442 (447)
..|..|...--+.|.+-+|..+++++.-.+|.+...|...+++-.+.|+.+.|..++.+..+ --|+.+..|
T Consensus 720 pLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LW 790 (913)
T KOG0495|consen 720 PLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLW 790 (913)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhH
Confidence 99999999999999999999999999999999999999999999999999999988887765 345555554
No 30
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.73 E-value=2.4e-14 Score=133.49 Aligned_cols=261 Identities=16% Similarity=0.093 Sum_probs=174.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhhhhc---CCCCcH------hhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcC-
Q 048090 151 NSVCANALLSGYCEAKLWAGGLELVRLMPAL---GLDYDH------FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL- 220 (447)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 220 (447)
-+...|.+...+...|++.+|...|...... ...+|. .+-..+....-..++.+.|.+.|..+.+..|+.
T Consensus 451 p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YI 530 (1018)
T KOG2002|consen 451 PPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYI 530 (1018)
T ss_pred CHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhH
Confidence 4455666666666777777777777665543 111222 122233444445556666666666666553221
Q ss_pred ------------------------------CCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHH
Q 048090 221 ------------------------------GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270 (447)
Q Consensus 221 ------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~ 270 (447)
..++..+..+...+.....+..|.+-|..+.... ...+|+.+.-.|.+
T Consensus 531 d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~--~~~~D~YsliaLGN 608 (1018)
T KOG2002|consen 531 DAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKT--STKTDAYSLIALGN 608 (1018)
T ss_pred HHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhh--ccCCchhHHHHhhH
Confidence 1122233333334444444444444333222211 11244444445555
Q ss_pred HHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHH
Q 048090 271 VYGR------------NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338 (447)
Q Consensus 271 ~~~~------------~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 338 (447)
.|.+ .+..++|+++|.+.++.. +-|...-+-+.-.++..|++..|..+|.++++. ......+|..
T Consensus 609 ~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lN 685 (1018)
T KOG2002|consen 609 VYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLN 685 (1018)
T ss_pred HHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeee
Confidence 4432 245678999999988864 337777788888899999999999999999876 2345678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhc
Q 048090 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKF 416 (447)
Q Consensus 339 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 416 (447)
+..+|..+|++..|+++|+...+.-..-++..+...|..++...|.+.+|.+....+....|.++.+-..++.+..+.
T Consensus 686 lah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 686 LAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKL 763 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHH
Confidence 999999999999999999998888776778889999999999999999999999999999999988777776655443
No 31
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=3.4e-14 Score=122.75 Aligned_cols=360 Identities=14% Similarity=0.034 Sum_probs=249.2
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhcCCCCc-hhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCc-hhhHHHHHHHH
Q 048090 54 FNVVISDFCRNGSPLYALKTFSFMHVHGIFLD-TYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS-VFVGSALIDLY 131 (447)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 131 (447)
+....+-|.++|++++|++.|.+..+. .|+ +..|.....+|...|+++++.+--...++. .|+ ...+..-.+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 344556678889999999999999884 567 677788888888889999888877777764 343 23444445566
Q ss_pred HccCChhhHHH----------------------Hhcc---------CC---C---CchhhHHHHHHHHH-----------
Q 048090 132 AKLLLIHDAEL----------------------MFDE---------IP---V---KNSVCANALLSGYC----------- 163 (447)
Q Consensus 132 ~~~g~~~~a~~----------------------~~~~---------~~---~---~~~~~~~~l~~~~~----------- 163 (447)
-..|++++|+. ++.+ +. + |+....++....+.
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 66666665542 1111 01 1 11111111111110
Q ss_pred --------------hcC---CHHHHHHHHHhhhhc-CCCCcH-----------hhHHHHHHHHhcCCcHHHHHHHHHHHH
Q 048090 164 --------------EAK---LWAGGLELVRLMPAL-GLDYDH-----------FTLSALLRACAGLSAAEFGRQVHAYMI 214 (447)
Q Consensus 164 --------------~~~---~~~~a~~~~~~~~~~-~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 214 (447)
..+ .+..|...+.+-... -..++. .+.......+.-.|+.-.+..-|+..+
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 001 122222222221100 001111 111111112334588889999999998
Q ss_pred HhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048090 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294 (447)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 294 (447)
+.. +.+...|--+...|....+.++-++.|++.... .+.+..+|-.-.+.+.-.+++++|..=|++.+.. .
T Consensus 354 ~l~---~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l----dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~ 424 (606)
T KOG0547|consen 354 KLD---PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL----DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--D 424 (606)
T ss_pred hcC---cccchHHHHHHHHHhhhhccHHHHHHHHHHHhc----CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--C
Confidence 873 234444777888899999999999999988776 6667788888888888889999999999999884 4
Q ss_pred C-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC------
Q 048090 295 P-DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS------ 367 (447)
Q Consensus 295 p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------ 367 (447)
| +...|..+..+..+.++++++...|++..++ ++-.+..|+.....+...++++.|.+.|+..++.. |.
T Consensus 425 pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE--~~~~~~~v 500 (606)
T KOG0547|consen 425 PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE--PREHLIIV 500 (606)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc--cccccccc
Confidence 4 4566777777777899999999999999876 46668999999999999999999999999998765 43
Q ss_pred chHh--HHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 368 SVSM--WGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 368 ~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
++.. .-.++..- =.+++..|..+++++++.+|....+|..|+..-.+.|+.++|+++|++-..
T Consensus 501 ~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 501 NAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2221 12222222 248999999999999999999999999999999999999999999997643
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.73 E-value=2.1e-14 Score=130.50 Aligned_cols=282 Identities=9% Similarity=0.025 Sum_probs=209.2
Q ss_pred cCChhhHHHHhccCCCC--chhh-HHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHH--HHHHHHhcCCcHHHHHH
Q 048090 134 LLLIHDAELMFDEIPVK--NSVC-ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLS--ALLRACAGLSAAEFGRQ 208 (447)
Q Consensus 134 ~g~~~~a~~~~~~~~~~--~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~ 208 (447)
.|+++.|++.+...... ++.. |-.......+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 58888888887765532 2233 333344557889999999999988764 45554333 33556778899999999
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcch------hhHHHHHHHHHhcCCHHHHH
Q 048090 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV------VLWTSMLGVYGRNGYFKEVI 282 (447)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~ 282 (447)
.++.+.+.. +.++.....+...|.+.|++++|.+++..+.+... ..+.. .+|..++.......+.+...
T Consensus 175 ~l~~~~~~~---P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~--~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 175 GVDKLLEVA---PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV--GDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHhcC---CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999988873 34677888888999999999999988887665421 11111 13333444444455566677
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048090 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362 (447)
Q Consensus 283 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 362 (447)
++++.+.+. .+.++.....+..++...|+.++|..++++..+. .|+.... ++.+....++.+++++.+++..+.
T Consensus 250 ~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 250 RWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh
Confidence 777776443 3447778888999999999999999999988754 5555322 233344669999999999999988
Q ss_pred CCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 363 GHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 363 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
. |+++..+..++..|.+.+++++|...|+++++..|++. .+..+..++.+.|+.++|.+++++-..
T Consensus 324 ~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 324 H--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred C--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7 99999899999999999999999999999999888654 467899999999999999999997754
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=2.8e-13 Score=121.22 Aligned_cols=372 Identities=8% Similarity=-0.005 Sum_probs=297.5
Q ss_pred CccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 048090 51 PLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDL 130 (447)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (447)
..+|+.-.+.|.+.+.++-|..+|...++- .+-+...|......--..|..+....++++++.. .+-....|......
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake 593 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKE 593 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHH
Confidence 356777778888888888888888888774 2334566777776667778889999999998886 35555666677777
Q ss_pred HHccCChhhHHHHhccCC---CCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHH
Q 048090 131 YAKLLLIHDAELMFDEIP---VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207 (447)
Q Consensus 131 ~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 207 (447)
+-..|++..|..++.+.- ..+...|-+-+.....+..++.|..+|.+.... .|+...|..-+...--.+..++|.
T Consensus 594 ~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHH
Confidence 888899999998887765 236777888888888999999999999988765 577777766666666678899999
Q ss_pred HHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048090 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287 (447)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 287 (447)
+++++.++. ++.-...|..+.+.+-+.++++.|.+.|..-... .|..+..|-.+...--+.|++-+|..++++
T Consensus 672 rllEe~lk~---fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~----cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 672 RLLEEALKS---FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK----CPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred HHHHHHHHh---CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc----CCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 999999887 5556778889999999999999999988743332 566677788888888888999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 048090 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS 367 (447)
Q Consensus 288 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 367 (447)
.+-.+.. +...|-..|++-.+.|+.+.|..+..+.++. ++.+...|..-|...-+.++-..+...+++. ..
T Consensus 745 arlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkc------e~ 815 (913)
T KOG0495|consen 745 ARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC------EH 815 (913)
T ss_pred HHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhc------cC
Confidence 9887643 7788999999999999999999999998875 5667788888888777777755555544433 23
Q ss_pred chHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCcccccc
Q 048090 368 SVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444 (447)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ 444 (447)
|+.....+...+....++++|...|.++++.+|++-.+|..+...+.+.|.-++-.+++.+... .+|.-+..|.-
T Consensus 816 dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~a 890 (913)
T KOG0495|consen 816 DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQA 890 (913)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHH
Confidence 5566788889999999999999999999999999999999999999999998888888888875 56776666653
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=6.6e-15 Score=131.97 Aligned_cols=278 Identities=13% Similarity=0.068 Sum_probs=224.0
Q ss_pred ChhhHHHHhccCCC--C-chhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCC--CCcHhhHHHHHHHHhcCCcHHHHHHHH
Q 048090 136 LIHDAELMFDEIPV--K-NSVCANALLSGYCEAKLWAGGLELVRLMPALGL--DYDHFTLSALLRACAGLSAAEFGRQVH 210 (447)
Q Consensus 136 ~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 210 (447)
+..+|...|..++. + .......+..+|...+++++|.++|+.+.+... .-+...|++.+--+-+ +-+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 45788888888652 2 345566778899999999999999999987521 1255677777665432 2222222
Q ss_pred -HHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048090 211 -AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289 (447)
Q Consensus 211 -~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 289 (447)
+.+... -+..+.+|.++.++|.-.++.+.|++.|+++... .+....+|+.+..-+.....+|.|...|+..+
T Consensus 410 aq~Li~~---~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl----dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 410 AQDLIDT---DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL----DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHhh---CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc----CCccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 233333 3446889999999999999999999999988774 44478899999999999999999999999986
Q ss_pred hCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 048090 290 MNGTKP-DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG-PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS 367 (447)
Q Consensus 290 ~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 367 (447)
.. .| +-..|.-+.-.|.+.++++.|+-.|+++. .+.|. ......+...+.+.|+.++|+++++++...+ |.
T Consensus 483 ~~--~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--~k 555 (638)
T KOG1126|consen 483 GV--DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--PK 555 (638)
T ss_pred cC--CchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--CC
Confidence 53 33 23455667778999999999999999998 45674 6677778888999999999999999999887 88
Q ss_pred chHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 368 SVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
++..-...+..+...+++++|...++++.+.-|++..++..++..|.+.|+.+.|+.-|.-+.+
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 8888888899999999999999999999999999999999999999999999999988887765
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=3.1e-13 Score=125.30 Aligned_cols=364 Identities=12% Similarity=0.014 Sum_probs=272.0
Q ss_pred HHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhH
Q 048090 61 FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140 (447)
Q Consensus 61 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 140 (447)
+...|++++|.+++.+..+.. +.+...|.+|...+-..|+.+++...+-.+.... +-|...|..+.....+.|.++.|
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 334599999999999998874 4467789999999999999999888776555543 55667888888888899999999
Q ss_pred HHHhccCCCC---chhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHh----hHHHHHHHHhcCCcHHHHHHHHHHH
Q 048090 141 ELMFDEIPVK---NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF----TLSALLRACAGLSAAEFGRQVHAYM 213 (447)
Q Consensus 141 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~ 213 (447)
.-.|.+..+. +...+-.-+..|-+.|+...|...|.++.....+.|.. +-...+..+...++-+.|.+.++..
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999887643 33334445677888999999999999998764222222 2223455666777778888888888
Q ss_pred HHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhh------------------------cccCCCcchhhHHHHH
Q 048090 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR------------------------LEGEINKDVVLWTSML 269 (447)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------------~~~~~~~~~~~~~~l~ 269 (447)
.... +-..+...++.++..|.+...++.|.......... ...+..++... --++
T Consensus 307 ~s~~-~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ 384 (895)
T KOG2076|consen 307 LSKE-KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLM 384 (895)
T ss_pred Hhhc-cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHh
Confidence 8742 34456677888888999999999988877654431 01112223333 1233
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcC
Q 048090 270 GVYGRNGYFKEVIKLYEAMLMNGTKP--DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347 (447)
Q Consensus 270 ~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 347 (447)
-++...+..+....+...+.+..+.| +...|.-+..++...|++.+|+.+|..+... ...-+...|-.+.++|...|
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhhHHHHHHHHHHh
Confidence 44555555555666666666666444 5677899999999999999999999999865 23335778999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhC---------CCchhHHHHHHHHHHhcCC
Q 048090 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD---------PHNVGIYVMLSNLYAKFCM 418 (447)
Q Consensus 348 ~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~ 418 (447)
..++|.+.|+..+... |++..+-..|...+.+.|++++|.+.+..+..-+ +++..+.......+...|+
T Consensus 464 e~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred hHHHHHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 9999999999999887 9999999999999999999999999999865322 3456677778888999999
Q ss_pred hHHHHHHHHHHHH
Q 048090 419 WDEIGQLRELMKE 431 (447)
Q Consensus 419 ~~~A~~~~~~m~~ 431 (447)
.++-+.+-..|..
T Consensus 542 ~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 542 REEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHHH
Confidence 9987766666654
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=1.8e-14 Score=123.36 Aligned_cols=206 Identities=9% Similarity=0.040 Sum_probs=132.2
Q ss_pred CCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHH
Q 048090 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279 (447)
Q Consensus 200 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 279 (447)
.|++++|.+.|++.+..+ ..-......+.-.+-..|++++|+++|-++... ...+..+.-.+.+.|-...+..
T Consensus 503 ngd~dka~~~ykeal~nd---asc~ealfniglt~e~~~~ldeald~f~klh~i----l~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNND---ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI----LLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred cCcHHHHHHHHHHHHcCc---hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHhhCHH
Confidence 366777777777666541 111122222333455667777777777766554 4445666666777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048090 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359 (447)
Q Consensus 280 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 359 (447)
.|++++.+.... ++.|+.....|...|-+.|+-..|.+.+-+--+ -++-+..+...|...|....-+++|+.+|++.
T Consensus 576 qaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 576 QAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKA 652 (840)
T ss_pred HHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777666553 344566777777777777777777766544322 23446777777777777777777787777776
Q ss_pred HhCCCCCCchHhHHHHHHHH-HhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCC
Q 048090 360 LDRGHGSSSVSMWGALLSAC-HDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCM 418 (447)
Q Consensus 360 ~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 418 (447)
.-. .|+... |..++..| .+.|++.+|..+|+...+..|.+..+...|++.+...|.
T Consensus 653 ali--qp~~~k-wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 653 ALI--QPNQSK-WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred Hhc--CccHHH-HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 543 254444 66655544 457778888888887777777777777777777766664
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.1e-13 Score=117.18 Aligned_cols=319 Identities=13% Similarity=0.045 Sum_probs=233.9
Q ss_pred hccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCCchh-hHHHHHHHHHhcCCHHHHHHH
Q 048090 96 STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV-CANALLSGYCEAKLWAGGLEL 174 (447)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~ 174 (447)
+.+.|..+.|...+...+.. .|-.-..|..|... ..+.+.+..+...++..+.. .--.+..++....+.++++.-
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~l---it~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k 249 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSEL---ITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQK 249 (559)
T ss_pred HHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHh---hchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666555543 23333344333332 22333333333333322111 112234556666788888888
Q ss_pred HHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCC-hHHHHHHHHhhhhh
Q 048090 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL-VTKALQVFNLAGHR 253 (447)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~ 253 (447)
.+.....|++.+...-+....+.....++++|+.+|+++.+.+|=--.|..+|..++.+-....+ .-.|..+++.
T Consensus 250 ~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i---- 325 (559)
T KOG1155|consen 250 KERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI---- 325 (559)
T ss_pred HHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh----
Confidence 88888888766655555555566778999999999999999854333466777776654433222 2234445441
Q ss_pred cccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCCh
Q 048090 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333 (447)
Q Consensus 254 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 333 (447)
.+--+.|..++.+-|.-.++.++|...|++..+.+.. ....|+.+..-|....+...|.+-++.+++- .+.|-
T Consensus 326 ----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p~Dy 398 (559)
T KOG1155|consen 326 ----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NPRDY 398 (559)
T ss_pred ----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--CchhH
Confidence 3344577888889999999999999999999986522 4677888888999999999999999999853 24478
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHH
Q 048090 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413 (447)
Q Consensus 334 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 413 (447)
..|-.|.++|.-.+...-|+-+|++..... |+|...|.+|+.+|.+.++.++|+..|..+...+-.+..++..|+..|
T Consensus 399 RAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLy 476 (559)
T KOG1155|consen 399 RAWYGLGQAYEIMKMHFYALYYFQKALELK--PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLY 476 (559)
T ss_pred HHHhhhhHHHHHhcchHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 999999999999999999999999999876 999999999999999999999999999999998877889999999999
Q ss_pred HhcCChHHHHHHHHHHHH
Q 048090 414 AKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 414 ~~~g~~~~A~~~~~~m~~ 431 (447)
.+.++.++|...+++-.+
T Consensus 477 e~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 999999999998887765
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=2.4e-16 Score=136.98 Aligned_cols=258 Identities=13% Similarity=0.102 Sum_probs=114.0
Q ss_pred HHHHHHHccCChhhHHHHhccC-C----CCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcC
Q 048090 126 ALIDLYAKLLLIHDAELMFDEI-P----VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200 (447)
Q Consensus 126 ~l~~~~~~~g~~~~a~~~~~~~-~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 200 (447)
.+...+.+.|++++|.+++++. . ..|...|..+.......++++.|.+.++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 4466777788888888888432 2 2255556666667777888889999888888765 2355566666666 678
Q ss_pred CcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHH
Q 048090 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280 (447)
Q Consensus 201 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 280 (447)
+++++|.+++....+. .+++..+..++..+...++++++.++++.+... ...+.+...|..+...+.+.|+.++
T Consensus 91 ~~~~~A~~~~~~~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER----DGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL--PAAPDSARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH---T---T-HHHHHHHHHHHHHCCHHHH
T ss_pred cccccccccccccccc----ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 8889998888776654 245566777888888999999999999876532 2235677888899999999999999
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048090 281 VIKLYEAMLMNGTKP-DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359 (447)
Q Consensus 281 a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 359 (447)
|++.+++..+. .| |......++..+...|+.+++..++....+. .+.++..+..+..+|...|+.++|+.++++.
T Consensus 165 A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 165 ALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccc
Confidence 99999999985 45 5677888999999999999999999988765 2556778889999999999999999999999
Q ss_pred HhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 048090 360 LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE 397 (447)
Q Consensus 360 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 397 (447)
.+.+ |+|+.+...++.++...|+.++|..+.+++.+
T Consensus 241 ~~~~--p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 241 LKLN--PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHS--TT-HHHHHHHHHHHT-----------------
T ss_pred cccc--cccccccccccccccccccccccccccccccc
Confidence 9877 99999999999999999999999999988765
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=1.9e-15 Score=135.34 Aligned_cols=261 Identities=14% Similarity=0.083 Sum_probs=212.8
Q ss_pred CCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCC-hHHHH
Q 048090 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL-VTKAL 244 (447)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~ 244 (447)
-+..+|+..|.++.+. +.-+......+..+|...+++++|+++|+.+.+..|-.-.+..+|.+.+--+-+.-. --.|.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 4678899999995554 344556777888999999999999999999999865444566777776654432111 11222
Q ss_pred HHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 048090 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP-DEVAFVTVISACSHTGQVKLGIEYFEWM 323 (447)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 323 (447)
++.+ ..+..+.+|.++.++|.-.++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+..
T Consensus 412 ~Li~--------~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 412 DLID--------TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred HHHh--------hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence 3332 2566789999999999999999999999999988 455 6788888888888899999999999988
Q ss_pred HHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCc
Q 048090 324 VHDYKLEPG-PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402 (447)
Q Consensus 324 ~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 402 (447)
+ ++.|. -..|--|.-.|.+.++++.|+-.|+++.+.+ |.+..+...++..+.+.|+.|+|+++++++..++|.|
T Consensus 482 l---~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn 556 (638)
T KOG1126|consen 482 L---GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN 556 (638)
T ss_pred h---cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence 7 44443 4455667778999999999999999999887 9999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCcccccc
Q 048090 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444 (447)
Q Consensus 403 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ 444 (447)
+-.-...+..+...+++++|+..++++++ +.|+......+
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~l 596 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFAL 596 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHH
Confidence 99999999999999999999999999987 67776554433
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=1e-12 Score=113.30 Aligned_cols=383 Identities=10% Similarity=0.012 Sum_probs=243.4
Q ss_pred CcchHHHhhccCC---CCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHH
Q 048090 35 NLGTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111 (447)
Q Consensus 35 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 111 (447)
++..|.++|++.. ..+...|-.-+..=.+++.+..|..+|++....=+..| ..|.-.+..--..|++..|.++|+.
T Consensus 88 e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 88 EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHHHHH
Confidence 6788999999864 36677788888889999999999999999987533333 2344444444567999999999998
Q ss_pred HHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCC--CCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHh-
Q 048090 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP--VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF- 188 (447)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 188 (447)
-.+ ..|+...|++.|+.=.+...++.|..++++.. .|++.+|-.....-.+.|+...|.++|+...+. -.|..
T Consensus 167 W~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~ 242 (677)
T KOG1915|consen 167 WME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEE 242 (677)
T ss_pred HHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHH
Confidence 887 58999999999999999999999999999865 789999988888888999999999999887764 12222
Q ss_pred ---hHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCC--hhHHHHHHHHHHhcCChHHHHHHHHh---h--hhhcccCC
Q 048090 189 ---TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND--VFMQSSLIEMYGKCGLVTKALQVFNL---A--GHRLEGEI 258 (447)
Q Consensus 189 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~---~--~~~~~~~~ 258 (447)
.+.+....-.+...++.|.-+|+-.+.. ++.+ ...|..+...--+-|+.....+..-. + ... -...
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~---~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~-v~~n 318 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDH---IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE-VSKN 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH-HHhC
Confidence 2333333334566778888888887776 3333 34454444444455554444333210 0 000 0124
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHH---hccCcHHHHHHHHHHHHHhcC
Q 048090 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV-------AFVTVISAC---SHTGQVKLGIEYFEWMVHDYK 328 (447)
Q Consensus 259 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-------~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~ 328 (447)
+.|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+=-+| ....+++.+.++++..++-
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-- 395 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-- 395 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--
Confidence 556666666666666677777777777777654 344211 111111111 2355666666666666531
Q ss_pred CCCChhhHHHHHHHH----HHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchh
Q 048090 329 LEPGPEHYSCLVDLL----CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404 (447)
Q Consensus 329 ~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 404 (447)
++....|+..+--+| .++.++..|.+++..++.. .|.+. +|...+..-.+.++++....++++.++.+|.|..
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~ 472 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCY 472 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhH
Confidence 222344443333322 3455666666666655433 25333 3666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 405 IYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 405 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
+|...+..-...|+++.|..+|+-....
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 6666666666666666666666655543
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=1.4e-13 Score=125.26 Aligned_cols=284 Identities=12% Similarity=-0.029 Sum_probs=170.2
Q ss_pred CCchhHHHHHHHHHHHcCCCCchhhHHHH-HHHHHccCChhhHHHHhccCCCC--chhhHH--HHHHHHHhcCCHHHHHH
Q 048090 99 VKDARFGKQVQAHVTKSGWLSSVFVGSAL-IDLYAKLLLIHDAELMFDEIPVK--NSVCAN--ALLSGYCEAKLWAGGLE 173 (447)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~--~l~~~~~~~~~~~~a~~ 173 (447)
.|+++.|++.+....+.. +++..+..+ .....+.|+++.|.+.|.++.+. +..... .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 456666665555443321 122222222 23335556666666666555422 221111 22445556666666666
Q ss_pred HHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCCh------hHHHHHHHHHHhcCChHHHHHHH
Q 048090 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV------FMQSSLIEMYGKCGLVTKALQVF 247 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~ 247 (447)
.++++.+.. +-+...+..+...+.+.|+++.|.+++..+.+... ..+.. .+|..++.......+.+...+++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~-~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV-GDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 666665553 23444555556666666666666666666666521 11111 13333444444444556666666
Q ss_pred HhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Q 048090 248 NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327 (447)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 327 (447)
+.+... .+.++.....+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+.
T Consensus 253 ~~lp~~----~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~- 323 (398)
T PRK10747 253 KNQSRK----TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ- 323 (398)
T ss_pred HhCCHH----HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh-
Confidence 654332 3456777777888888888888888888887773 4444222 233444558888888888888765
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhC
Q 048090 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399 (447)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 399 (447)
.+-|...+..+.+.+.+.|++++|.+.|+.+.+.. |++. .+..+..++...|+.++|.+++++.+...
T Consensus 324 -~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 324 -HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--PDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 23346667788888888888888888888888775 6444 37788888888888888888888887643
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=1.7e-13 Score=125.39 Aligned_cols=284 Identities=11% Similarity=-0.082 Sum_probs=190.3
Q ss_pred ccCChhhHHHHhccCCC--Cc-hhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHh--hHHHHHHHHhcCCcHHHHH
Q 048090 133 KLLLIHDAELMFDEIPV--KN-SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF--TLSALLRACAGLSAAEFGR 207 (447)
Q Consensus 133 ~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~ 207 (447)
..|+++.|++.+.+..+ |+ ...+-....+..+.|+++.|.+.+.+..+. .|+.. ........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 46777777777766542 22 223344456667778888888888887654 24432 2333456667788888888
Q ss_pred HHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHH----HHHHHHHhcCCHHHHHH
Q 048090 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT----SMLGVYGRNGYFKEVIK 283 (447)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~~ 283 (447)
..++.+.+.. +-+..+...+...+...|++++|.+.+..+.+. + ..+...+. .........+..++..+
T Consensus 174 ~~l~~l~~~~---P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~---~-~~~~~~~~~l~~~a~~~~l~~~~~~~~~~ 246 (409)
T TIGR00540 174 HGVDKLLEMA---PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA---G-LFDDEEFADLEQKAEIGLLDEAMADEGID 246 (409)
T ss_pred HHHHHHHHhC---CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc---C-CCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 8888888863 335667778888888888888888888766543 1 22222221 11111122233333334
Q ss_pred HHHHHHhCCC---CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhh---HHHHHHHHHHcCCHHHHHHHHH
Q 048090 284 LYEAMLMNGT---KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH---YSCLVDLLCRAGELDKAWKLIN 357 (447)
Q Consensus 284 ~~~~m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~ 357 (447)
.+..+.+... +.+...+..+...+...|+.++|.+++++..+. .|+... .....-.....++.+.+.+.++
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 4444444321 136778888888999999999999999999865 444331 1111122334578888999999
Q ss_pred HHHhCCCCCCch--HhHHHHHHHHHhcCCccHHHHHHHH--HhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 358 EMLDRGHGSSSV--SMWGALLSACHDCGKFELGKLAAQK--ALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 358 ~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
+..+.. |+++ ....+++..+.+.|++++|.+.|++ +.+..|++. .+..++..+.+.|+.++|.++|++...
T Consensus 324 ~~lk~~--p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 324 KQAKNV--DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHhC--CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888876 8888 7788999999999999999999994 555666544 466999999999999999999998654
No 43
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=8.7e-13 Score=112.40 Aligned_cols=374 Identities=13% Similarity=0.059 Sum_probs=251.5
Q ss_pred CccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhc--cCCchhHH-HHHHHHHHHc------------
Q 048090 51 PLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTAST--SVKDARFG-KQVQAHVTKS------------ 115 (447)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~------------ 115 (447)
+.+=|.|+.. ...|.++++.-+|+.|.+.|+..+...-..+++..+ ...+..-| .+.|-.|...
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 4456666665 557899999999999999998877766555555322 22221111 1112222211
Q ss_pred -------CCCCchhhHHHHHHHHHccCChhhHHHHhccCC----CCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCC
Q 048090 116 -------GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP----VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD 184 (447)
Q Consensus 116 -------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (447)
-.+.+..++.++|.++++-...+.|.+++++-. +-+..+||.+|.+-.-. ...+++.+|....+.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcC
Confidence 135678899999999999999999999998876 33778888888764332 226788999999999
Q ss_pred CcHhhHHHHHHHHhcCCcHHH----HHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHH-HHHHHHhhhh-h----c
Q 048090 185 YDHFTLSALLRACAGLSAAEF----GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK-ALQVFNLAGH-R----L 254 (447)
Q Consensus 185 ~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-~----~ 254 (447)
||..|+++++++..+.|+++. |.+++.+|.+. |++|...+|..++..+++.+++.+ |..++..+.. . .
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKei--GVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEI--GVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh--CCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 999999999999999997764 45677778887 899999999999999999888755 3333332221 1 1
Q ss_pred ccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Q 048090 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG----TKPD---EVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327 (447)
Q Consensus 255 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~----~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 327 (447)
....+.|...|...|..|.+..+.+-|.++-.-+.... +.|+ ..-|..+....|.....+.-...|+.|...
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~- 427 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS- 427 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 12233355567777888888888888887766554321 2333 234667777888888889999999999876
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcC-Ccc-HHHH-----------HHHH
Q 048090 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG-KFE-LGKL-----------AAQK 394 (447)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~-~a~~-----------~~~~ 394 (447)
-.-|+..+...++++..-.+.++-.-+++..++..|..-... .-.-++..+++.. ... -+.+ .+.+
T Consensus 428 ~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~-l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e 506 (625)
T KOG4422|consen 428 AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSD-LREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKE 506 (625)
T ss_pred eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHH-HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 567888888888898888999999888888888776432221 1222333333332 110 0000 1111
Q ss_pred Hhhh-------CCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 048090 395 ALEL-------DPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433 (447)
Q Consensus 395 ~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 433 (447)
..+. ..-.+...+..+..+.+.|++++|.+++.-+.+.+
T Consensus 507 ~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 507 AYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 1111 11134556677777889999999999998886544
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6.3e-13 Score=114.33 Aligned_cols=357 Identities=14% Similarity=0.045 Sum_probs=238.6
Q ss_pred CCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhH--HH
Q 048090 49 RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVG--SA 126 (447)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ 126 (447)
.|+..+-...-.+.+.|..+.|.+.|...... .+-.-..|..|...+.. .++...... |.+.|.... -.
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit~-------~e~~~~l~~-~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELITD-------IEILSILVV-GLPSDMHWMKKFF 232 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhch-------HHHHHHHHh-cCcccchHHHHHH
Confidence 44444444444556678888888888877654 22233344444333322 222222322 222221111 22
Q ss_pred HHHHHHccCChhhHHHHhccCCC----CchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCC--CcHhhHHHHHHHHhcC
Q 048090 127 LIDLYAKLLLIHDAELMFDEIPV----KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD--YDHFTLSALLRACAGL 200 (447)
Q Consensus 127 l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 200 (447)
+..++....+.+++..-.+.+.. .+...-+....+.-...|+++|+.+|+++.+...- .|..+|+.++-.-...
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 34555555666666655544432 12222333334445677899999999998876311 1566777766543221
Q ss_pred CcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHH
Q 048090 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280 (447)
Q Consensus 201 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 280 (447)
. ....+.+-.-. -.+-.+.|+..+.+-|.-.++.++|...|+++... .+.....|+.|.+-|...++...
T Consensus 313 s----kLs~LA~~v~~--idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL----Np~~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 313 S----KLSYLAQNVSN--IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL----NPKYLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred H----HHHHHHHHHHH--hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc----CcchhHHHHHhhHHHHHhcccHH
Confidence 1 12222222222 12235567788888888899999999999977665 55567789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048090 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEM 359 (447)
Q Consensus 281 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 359 (447)
|.+.++..++-+ +-|-..|..|.++|.-.+.+.-|+-+|++..+ ++| |...|.+|.++|.+.++.++|+..|.+.
T Consensus 383 Ai~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykra 458 (559)
T KOG1155|consen 383 AIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRA 458 (559)
T ss_pred HHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999998853 33778899999999999999999999998874 466 5889999999999999999999999999
Q ss_pred HhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhh-------hCCCchhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048090 360 LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE-------LDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMK 430 (447)
Q Consensus 360 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 430 (447)
...|- .+..++..|+..|-+.++.++|...+++.++ ..|....+..-|..-+.+.+++++|........
T Consensus 459 i~~~d--te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 459 ILLGD--TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred Hhccc--cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 88773 3456789999999999999999999998877 234445555567778888888888876555443
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.67 E-value=1.5e-13 Score=125.62 Aligned_cols=268 Identities=12% Similarity=-0.025 Sum_probs=197.5
Q ss_pred HhcCCHHHHHHHHHhhhhcCCCCcH-hhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChH
Q 048090 163 CEAKLWAGGLELVRLMPALGLDYDH-FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241 (447)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 241 (447)
...|+++.|.+.+.+..+. .|++ ..+.....+..+.|+.+.|.+.+.+..+..+ .+...+.......+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p--~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAG--NDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--cCchHHHHHHHHHHHHCCCHH
Confidence 4679999999999887765 3543 3344556777889999999999999987621 122234445688889999999
Q ss_pred HHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---hccCcHHHHHH
Q 048090 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC---SHTGQVKLGIE 318 (447)
Q Consensus 242 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~~~~a~~ 318 (447)
.|...++.+... .|.+...+..+...+.+.|++++|.+.+..+.+.++.++......-..++ ...+..+.+.+
T Consensus 171 ~Al~~l~~l~~~----~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~ 246 (409)
T TIGR00540 171 AARHGVDKLLEM----APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGID 246 (409)
T ss_pred HHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 999999987664 45577788999999999999999999999999987543332211111121 23333333444
Q ss_pred HHHHHHHhcC--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhH--HHHHHHHHhcCCccHHHHHHHH
Q 048090 319 YFEWMVHDYK--LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW--GALLSACHDCGKFELGKLAAQK 394 (447)
Q Consensus 319 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~a~~~~~~ 394 (447)
.+..+.+... .+.+...+..+...+...|+.++|.+++++..+.. |++.... ..........++.+.+.+.+++
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 5555554310 12378889999999999999999999999999976 6555321 2222233445788899999999
Q ss_pred HhhhCCCch--hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCcc
Q 048090 395 ALELDPHNV--GIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGC 440 (447)
Q Consensus 395 ~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 440 (447)
.++..|+++ ....++++.+.+.|++++|.+.|++.......||...
T Consensus 325 ~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 325 QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH
Confidence 999999999 9999999999999999999999996555445676544
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=5.2e-12 Score=109.09 Aligned_cols=407 Identities=9% Similarity=-0.026 Sum_probs=304.8
Q ss_pred cchhHHHhhhhhhhhHHHhhhhhhhhhcccccCCcchHHHhhccCCC--CCC-ccHHHHHHHHHhCCChhhHHHHHHHHH
Q 048090 2 VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP--RNP-LPFNVVISDFCRNGSPLYALKTFSFMH 78 (447)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~ 78 (447)
||.+.+.-.. ++..+|-..+.+=.++. .+..|..+|++... |-+ ..|-..+..=-..|++..|.++|++..
T Consensus 95 v~ERALdvd~---r~itLWlkYae~Emknk---~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~ 168 (677)
T KOG1915|consen 95 VFERALDVDY---RNITLWLKYAEFEMKNK---QVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWM 168 (677)
T ss_pred HHHHHHhccc---ccchHHHHHHHHHHhhh---hHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3444444332 33566766777666766 48889999998643 222 345555666667899999999999998
Q ss_pred hcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCC------ch
Q 048090 79 VHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK------NS 152 (447)
Q Consensus 79 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~ 152 (447)
+ ..|+...|.+.++.-.+.+.++.|..+|+..+- +.|+...|--....=.++|.+..|..+|+...+. +.
T Consensus 169 ~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e 244 (677)
T KOG1915|consen 169 E--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAE 244 (677)
T ss_pred c--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHH
Confidence 7 589999999999999999999999999999886 4599999988888888999999999999876521 34
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCc--HhhHHHHHHHHhcCCcHHHHHH--------HHHHHHHhhhcCCC
Q 048090 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYD--HFTLSALLRACAGLSAAEFGRQ--------VHAYMIRKCCNLGN 222 (447)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~--------~~~~~~~~~~~~~~ 222 (447)
..+.++..--.++..++.|.-+|+-..+.- +.+ ...|......--+-|+....++ -++.+++. .+.
T Consensus 245 ~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~---np~ 320 (677)
T KOG1915|consen 245 ILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK---NPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh---CCC
Confidence 456666666667778889988888877652 222 2334444333333455443332 23444444 345
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchh--hHHHHHH-----H---HHhcCCHHHHHHHHHHHHhCC
Q 048090 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV--LWTSMLG-----V---YGRNGYFKEVIKLYEAMLMNG 292 (447)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~l~~-----~---~~~~g~~~~a~~~~~~m~~~~ 292 (447)
|-.+|-..+..-...|+.+...++|+++..- +||-.. .|.-.|- + -....+.+.+.++|+..++.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan----vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l- 395 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN----VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL- 395 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc----CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-
Confidence 6778888888888899999999999976553 555321 2222221 1 12468899999999999883
Q ss_pred CCCCHHHHHHHHHHH----hccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc
Q 048090 293 TKPDEVAFVTVISAC----SHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSS 368 (447)
Q Consensus 293 ~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 368 (447)
++....||.-+--.| .++.++..|.+++...+ |..|...++...|..-.+.++++.+..++++.+.-+ |.+
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~--Pe~ 470 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS--PEN 470 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--hHh
Confidence 344556666544433 46789999999999988 889999999999999999999999999999999987 999
Q ss_pred hHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCC--chhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 369 VSMWGALLSACHDCGKFELGKLAAQKALELDPH--NVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 369 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
..+|...+..-...|+.+.|..+|.-+++...- ....|-..+..-...|.++.|..+++++.+.
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 999999999999999999999999988874422 2446788888888999999999999999874
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.63 E-value=4.1e-13 Score=113.94 Aligned_cols=202 Identities=11% Similarity=0.042 Sum_probs=167.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 048090 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302 (447)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 302 (447)
....+..+...+...|++++|.+.++++... .+.+...+..+...+...|++++|.+.+++..+.. +.+...+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~ 104 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH----DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNN 104 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 4566777888888999999999999876553 34556778888888999999999999999988764 335567777
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhc
Q 048090 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382 (447)
Q Consensus 303 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 382 (447)
+...+...|++++|...++++............+..+..++...|++++|...+++..... |++...+..++..+...
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~ 182 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLR 182 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHc
Confidence 8888889999999999999987642222335567778888999999999999999998876 77777899999999999
Q ss_pred CCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 383 GKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 383 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
|++++|...++++.+..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 183 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 183 GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999999998888888888999999999999999999888765
No 48
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=2e-12 Score=111.10 Aligned_cols=374 Identities=12% Similarity=0.026 Sum_probs=246.0
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCC------------CchhhH
Q 048090 57 VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL------------SSVFVG 124 (447)
Q Consensus 57 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~ 124 (447)
+.-.+.+.|+++.|+..|+...+. .|+..+-..++-++...|+.++..+.|..|+..... |+....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 334456777788888888777764 466555444444445567777777777777754222 222222
Q ss_pred HHHH-----HHHHccC--ChhhHH----HHhccCCCCchh-------------hHH--------HHHHHHHhcCCHHHHH
Q 048090 125 SALI-----DLYAKLL--LIHDAE----LMFDEIPVKNSV-------------CAN--------ALLSGYCEAKLWAGGL 172 (447)
Q Consensus 125 ~~l~-----~~~~~~g--~~~~a~----~~~~~~~~~~~~-------------~~~--------~l~~~~~~~~~~~~a~ 172 (447)
+..+ .-+.+.+ +.++++ ++..-+..|+-. .+. .-...+.+.|+++.|+
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 2211 1111111 112221 111111222210 011 1124477899999999
Q ss_pred HHHHhhhhcCCCCcHhhHHHH--HHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhh
Q 048090 173 ELVRLMPALGLDYDHFTLSAL--LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLA 250 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 250 (447)
++++-+.+..-+.-...-+.| +..+....++..|.++-+..+..+ .-++.....-.+.-...|++++|.+.+++.
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d---ryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID---RYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc---ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 999988765433222222222 222333457788888887776652 234444444555667789999999999955
Q ss_pred hhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCC
Q 048090 251 GHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330 (447)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 330 (447)
..- ....+.....+.-.+-..|+.++|++.|-++..- +..+..+...+...|....+...|++++-+... -++
T Consensus 517 l~n----dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip 589 (840)
T KOG2003|consen 517 LNN----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIP 589 (840)
T ss_pred HcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCC
Confidence 321 2222333333445677899999999999887653 344777888889999999999999999988753 244
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHH
Q 048090 331 PGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410 (447)
Q Consensus 331 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 410 (447)
.|+.....|.+.|-+.|+-..|.+.+-+--+-- |.+..+..=|...|....=++++...|+++.-+.|........++
T Consensus 590 ~dp~ilskl~dlydqegdksqafq~~ydsyryf--p~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmia 667 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQCHYDSYRYF--PCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIA 667 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhccccc--CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 468899999999999999999999877665543 888888888888999999999999999999888886666556666
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCCccccccc
Q 048090 411 NLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445 (447)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~ 445 (447)
.++.+.|++++|.++++.... .+.-|..+..++|
T Consensus 668 sc~rrsgnyqka~d~yk~~hr-kfpedldclkflv 701 (840)
T KOG2003|consen 668 SCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLV 701 (840)
T ss_pred HHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHH
Confidence 677889999999999998854 4555655554444
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=2.8e-12 Score=105.38 Aligned_cols=298 Identities=13% Similarity=0.094 Sum_probs=212.9
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcC-CCCc--hhhHHHHH
Q 048090 52 LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG-WLSS--VFVGSALI 128 (447)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~ 128 (447)
..|-.=++.+. ..+.++|.++|-+|.+.+ +-+..+..++-+.+.+.|..+.|.++++.+.++. ++-+ ......|.
T Consensus 37 r~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 37 RDYVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLG 114 (389)
T ss_pred HHHHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 34444444443 567899999999998853 2345667788888999999999999999998752 1111 12334566
Q ss_pred HHHHccCChhhHHHHhccCCCC---chhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHh----hHHHHHHHHhcCC
Q 048090 129 DLYAKLLLIHDAELMFDEIPVK---NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF----TLSALLRACAGLS 201 (447)
Q Consensus 129 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~ 201 (447)
.-|...|-+|.|+.+|..+... -......|+..|-...+|++|+++-+++.+.+-.+... -|.-+...+....
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 7788899999999999998753 34567788999999999999999999888775444322 3444555556678
Q ss_pred cHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHH
Q 048090 202 AAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281 (447)
Q Consensus 202 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 281 (447)
+.+.|..++.+..+.++ ..+..--.+.+.+...|+++.|.+.++.+.+. +..--..+...+..+|.+.|+.++.
T Consensus 195 ~~d~A~~~l~kAlqa~~---~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ---n~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 195 DVDRARELLKKALQADK---KCVRASIILGRVELAKGDYQKAVEALERVLEQ---NPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred hHHHHHHHHHHHHhhCc---cceehhhhhhHHHHhccchHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 88899999999888733 35556667788889999999999999866543 2223345677888899999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH---HcCCHHHHHHHHHH
Q 048090 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC---RAGELDKAWKLINE 358 (447)
Q Consensus 282 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~ 358 (447)
...+.++.+....++ .-..+........-.+.|..++.+-..+ +|+...+..||+.-. ..|...+.+.+++.
T Consensus 269 ~~fL~~~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~ 343 (389)
T COG2956 269 LNFLRRAMETNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRD 343 (389)
T ss_pred HHHHHHHHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHHHHH
Confidence 999999888643333 3334444444455566777776666654 799888888888654 33456666777777
Q ss_pred HHhC
Q 048090 359 MLDR 362 (447)
Q Consensus 359 ~~~~ 362 (447)
|+..
T Consensus 344 mvge 347 (389)
T COG2956 344 MVGE 347 (389)
T ss_pred HHHH
Confidence 7644
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.61 E-value=5.7e-12 Score=106.76 Aligned_cols=290 Identities=12% Similarity=0.024 Sum_probs=224.6
Q ss_pred cCChhhHHHHhccCCC---CchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHH
Q 048090 134 LLLIHDAELMFDEIPV---KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210 (447)
Q Consensus 134 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 210 (447)
.|++..|++...+-.+ .....|..-+.+.-+.|+.+.+-.++.+.-+.--.++...+.+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 6999999999877543 2344566666777888999999999999887533455566667777788899999999999
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcch-------hhHHHHHHHHHhcCCHHHHHH
Q 048090 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV-------VLWTSMLGVYGRNGYFKEVIK 283 (447)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~ 283 (447)
+++... -+-++.+......+|.+.|++.....++..+.+. +.-.+. .+|..++.-....+..+.-..
T Consensus 177 ~~ll~~---~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka---~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 177 DQLLEM---TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKA---GLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred HHHHHh---CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc---cCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 999887 3446778888999999999999999999866554 333332 245666666555666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048090 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRG 363 (447)
Q Consensus 284 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 363 (447)
.|+....+ .+-++..-.+++.-+...|+.++|.++..+..+. +..|+ ...+ -.+.+-++.+.-++..++-.+..
T Consensus 251 ~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 251 WWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhC
Confidence 77776544 4556677778888889999999999999998877 55665 1122 23567788888888888877766
Q ss_pred CCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC
Q 048090 364 HGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438 (447)
Q Consensus 364 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 438 (447)
|+++..+.+|+..|.+.+.+.+|...++.+++..| +...|..++.++.+.|+..+|.+..++....-..|+.
T Consensus 325 --~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 325 --PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred --CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 77888999999999999999999999998888776 6778999999999999999999999988765555554
No 51
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=3.9e-13 Score=110.52 Aligned_cols=232 Identities=14% Similarity=0.083 Sum_probs=200.2
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHH
Q 048090 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268 (447)
Q Consensus 189 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 268 (447)
--..+..+|.+.|.+..|++.++..++. .|-+.+|..|-.+|.+..++..|+.+|.+-.+. .|-++....-+
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~----fP~~VT~l~g~ 296 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS----FPFDVTYLLGQ 296 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc----CCchhhhhhhh
Confidence 3446788999999999999999998886 467778899999999999999999999865553 55566666778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC
Q 048090 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348 (447)
Q Consensus 269 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 348 (447)
...+-..++.++|.++|+...+.. ..+.....++...|...++++.|..+++++.+- | .-++..|+.+.-+|.-.++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G-~~speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-G-AQSPELFCNIGLCCLYAQQ 373 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-c-CCChHHHhhHHHHHHhhcc
Confidence 888899999999999999998864 446777778888899999999999999999876 5 3578889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCC-chHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHH
Q 048090 349 LDKAWKLINEMLDRGHGSS-SVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRE 427 (447)
Q Consensus 349 ~~~A~~~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 427 (447)
++-++.-|++....--.|. ...+|..+.......||+..|.+.|+-++..++++...++.|+..-.+.|+.++|..+++
T Consensus 374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 9999999999876643332 344699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 048090 428 LMKE 431 (447)
Q Consensus 428 ~m~~ 431 (447)
....
T Consensus 454 ~A~s 457 (478)
T KOG1129|consen 454 AAKS 457 (478)
T ss_pred Hhhh
Confidence 8876
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1e-11 Score=109.67 Aligned_cols=274 Identities=14% Similarity=0.040 Sum_probs=215.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHH
Q 048090 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230 (447)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 230 (447)
++........-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+-.++++. .|..+.+|-++
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~---yP~~a~sW~aV 318 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL---YPSKALSWFAV 318 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh---CCCCCcchhhH
Confidence 45555566667778899999999999988764 556666666677888888888888888888887 45578889999
Q ss_pred HHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 048090 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHT 310 (447)
Q Consensus 231 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 310 (447)
.-.|...|+..+|.+.|.+...+ .+.-...|-.+..+|+-.|..++|+..+...-+.= +-....+--+.--|.+.
T Consensus 319 g~YYl~i~k~seARry~SKat~l----D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTL----DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRT 393 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhc----CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHh
Confidence 99999999999999999987665 45556789999999999999999999988876641 11111222334457788
Q ss_pred CcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----C-CCCCchHhHHHHHHHHHhcCC
Q 048090 311 GQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDR----G-HGSSSVSMWGALLSACHDCGK 384 (447)
Q Consensus 311 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~~~~~~~~l~~~~~~~g~ 384 (447)
++.+.|.+.|.... ++.| |+...+-+.-.....+.+.+|..+|+..+.. + -.+....+++.|+.+|.+.+.
T Consensus 394 ~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 394 NNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred ccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 99999999999887 5566 4667777776677788999999999887621 1 011234458999999999999
Q ss_pred ccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC
Q 048090 385 FELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438 (447)
Q Consensus 385 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 438 (447)
+++|+..+++++...|.+..++..++-.|...|+++.|++.|.+... +.||-
T Consensus 471 ~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n 522 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDN 522 (611)
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCcc
Confidence 99999999999999999999999999999999999999999987764 66664
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=2.2e-11 Score=103.25 Aligned_cols=284 Identities=15% Similarity=0.026 Sum_probs=170.9
Q ss_pred CCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCC----chhhHHHHHHHHHhcCCHHHHHHH
Q 048090 99 VKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK----NSVCANALLSGYCEAKLWAGGLEL 174 (447)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~ 174 (447)
.|++..|+.......+.+-.| ...|..-..+-...|+.+.+-.++.+..++ +...+-+..+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 355555555555544443221 222333334444455555555555444322 223333444445555555555555
Q ss_pred HHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCC-------hhHHHHHHHHHHhcCChHHHHHHH
Q 048090 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND-------VFMQSSLIEMYGKCGLVTKALQVF 247 (447)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~ 247 (447)
+.++.+.+ +-.+........+|.+.|++.....+...+.+. +.-.+ ..+|..+++-....+..+.-...+
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka--~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKA--GLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc--cCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 55555443 223344445555555555555555555555555 22222 234555666555555555555566
Q ss_pred HhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Q 048090 248 NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327 (447)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 327 (447)
+..... ...++..-.+++.-+.+.|+.++|.++.++..+++..|+. ...-.+.+.++.+.-++..++-.+..
T Consensus 253 ~~~pr~----lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 253 KNQPRK----LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HhccHH----hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 644333 4445666667777788888888888888888887666652 22234566777777777777776654
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhC
Q 048090 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399 (447)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 399 (447)
+.. +..+.+|...|.+.+.+.+|.+.|+..++.. | +...|..+..++.+.|+.++|.+..++++..-
T Consensus 325 ~~~--p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~--~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 325 PED--PLLLSTLGRLALKNKLWGKASEALEAALKLR--P-SASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred CCC--hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 433 4677888888888888888888888877775 5 55558888888888888888888888887543
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=2e-11 Score=100.52 Aligned_cols=269 Identities=13% Similarity=0.093 Sum_probs=173.8
Q ss_pred CCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCC-CCch------hhHHHHHHHHHhcCCHHHH
Q 048090 99 VKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP-VKNS------VCANALLSGYCEAKLWAGG 171 (447)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~------~~~~~l~~~~~~~~~~~~a 171 (447)
.++.++|.+.|-+|.+.. +-+..+..+|.+.|-+.|.+|.|+++-+.+. .||. .....|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467888888888888743 3445566778888888899999988887766 3432 2344566678888888888
Q ss_pred HHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCC----hhHHHHHHHHHHhcCChHHHHHHH
Q 048090 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND----VFMQSSLIEMYGKCGLVTKALQVF 247 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 247 (447)
..+|..+.+.+ ..-......|+..|-...+|++|.++-+++.+.+ -.+. ...|.-|...+....+.+.|...+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~--~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLG--GQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC--CccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 88888887754 3344566778888888888888888888887762 1221 123445555555666777777777
Q ss_pred HhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Q 048090 248 NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327 (447)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 327 (447)
.+.... .+..+..--.+...+...|+++.|.+.++...+.+..--..+...|..+|...|++++....+..+.+.
T Consensus 204 ~kAlqa----~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~- 278 (389)
T COG2956 204 KKALQA----DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET- 278 (389)
T ss_pred HHHHhh----CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-
Confidence 655443 344455555566667777777777777777776654444556666667777777777777777666543
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHh
Q 048090 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381 (447)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 381 (447)
.++...-..+.+.-....-.+.|..++.+-+... | +...+..++.....
T Consensus 279 --~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~--P-t~~gf~rl~~~~l~ 327 (389)
T COG2956 279 --NTGADAELMLADLIELQEGIDAAQAYLTRQLRRK--P-TMRGFHRLMDYHLA 327 (389)
T ss_pred --cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhC--C-cHHHHHHHHHhhhc
Confidence 3444444444444444444556666555555543 4 44445556555443
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=4.3e-13 Score=110.29 Aligned_cols=234 Identities=13% Similarity=0.079 Sum_probs=207.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHH
Q 048090 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234 (447)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 234 (447)
-+.+.++|.+.|.+.+|.+.++.-.+. .|-+.||..|-..|.+..+...|..++.+.+.. ++.++.....+...+
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhhHHHH
Confidence 367889999999999999999988876 677789999999999999999999999999886 566777778888999
Q ss_pred HhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH
Q 048090 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314 (447)
Q Consensus 235 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 314 (447)
-..++.++|.++++...+. .+.++.....+...|.-.++++-|+..|+++.+.|+. +...|..+.-+|...++++
T Consensus 301 eam~~~~~a~~lYk~vlk~----~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKL----HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHhHHHHHHHHHHHHhc----CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 9999999999999977665 5667777888888899999999999999999999976 7788999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHH
Q 048090 315 LGIEYFEWMVHDYKLEPG--PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAA 392 (447)
Q Consensus 315 ~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 392 (447)
-++.-|++.... --.|+ ...|-.+.......|++..|.+.|+-.+..+ |++..+++.|.-.-.+.|+++.|..++
T Consensus 376 ~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~~h~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 376 LVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD--AQHGEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred hhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC--cchHHHHHhHHHHHhhcCchHHHHHHH
Confidence 999999998765 33454 5678888888889999999999999999888 888999999999999999999999999
Q ss_pred HHHhhhCCC
Q 048090 393 QKALELDPH 401 (447)
Q Consensus 393 ~~~~~~~~~ 401 (447)
+.+.+..|.
T Consensus 453 ~~A~s~~P~ 461 (478)
T KOG1129|consen 453 NAAKSVMPD 461 (478)
T ss_pred HHhhhhCcc
Confidence 999988886
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.55 E-value=6e-12 Score=119.59 Aligned_cols=263 Identities=13% Similarity=-0.015 Sum_probs=192.4
Q ss_pred chhhHHHHHHHHHh-----cCCHHHHHHHHHhhhhcCCCCc-HhhHHHHHHHHh---------cCCcHHHHHHHHHHHHH
Q 048090 151 NSVCANALLSGYCE-----AKLWAGGLELVRLMPALGLDYD-HFTLSALLRACA---------GLSAAEFGRQVHAYMIR 215 (447)
Q Consensus 151 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 215 (447)
+...|...+++-.. .+++++|.+.|++..+. .|+ ...|..+..++. ..+++++|...+++.++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45556666665322 23467899999999876 454 445555544432 33568999999999998
Q ss_pred hhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048090 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295 (447)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 295 (447)
.+ +.+...+..+...+...|++++|...|+++... .|.+...+..+..++...|++++|...+++..+....
T Consensus 333 ld---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~- 404 (553)
T PRK12370 333 LD---HNNPQALGLLGLINTIHSEYIVGSLLFKQANLL----SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT- 404 (553)
T ss_pred cC---CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-
Confidence 73 347788888999999999999999999987775 5556778888999999999999999999999986433
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHH
Q 048090 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374 (447)
Q Consensus 296 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 374 (447)
+...+..++..+...|++++|...++++... ..| +...+..+..++...|++++|...+.++.... |.+....+.
T Consensus 405 ~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~--~~~~~~~~~ 480 (553)
T PRK12370 405 RAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE--ITGLIAVNL 480 (553)
T ss_pred ChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc--chhHHHHHH
Confidence 2223334444566789999999999998754 235 35567778888999999999999999987664 667777778
Q ss_pred HHHHHHhcCCccHHHHHHHHHhhhC---CCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 048090 375 LLSACHDCGKFELGKLAAQKALELD---PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433 (447)
Q Consensus 375 l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 433 (447)
+...+...|+ .|...++++.+.. +.++.. +...|.-.|+.+.+... +++.+.+
T Consensus 481 l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 481 LYAEYCQNSE--RALPTIREFLESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHhccHH--HHHHHHHHHHHHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 8888888884 7888888777643 333333 44456667776666555 7777654
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=5.4e-11 Score=103.34 Aligned_cols=350 Identities=11% Similarity=-0.026 Sum_probs=245.3
Q ss_pred cCCcchHHHhhccCC--CCC-CccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCc-hhhHHHHHHHhccCCchhHHHH-
Q 048090 33 KKNLGTLTNCLKFLN--PRN-PLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLD-TYALCSSLTASTSVKDARFGKQ- 107 (447)
Q Consensus 33 ~~~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~- 107 (447)
.|++++|++.+.+.. .|| +..|.....+|...|+|+++.+--...++. .|+ +..+..-.+++-..|++++|+.
T Consensus 128 ~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~eal~D 205 (606)
T KOG0547|consen 128 NKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDEALFD 205 (606)
T ss_pred cccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHHHHHh
Confidence 447999999999864 466 888999999999999999998887777764 444 2334444445555555555432
Q ss_pred ---------------------HHHHH--------HH-cC--CCCchhhHHHHHHHHHcc--------CC-----hhhHHH
Q 048090 108 ---------------------VQAHV--------TK-SG--WLSSVFVGSALIDLYAKL--------LL-----IHDAEL 142 (447)
Q Consensus 108 ---------------------~~~~~--------~~-~~--~~~~~~~~~~l~~~~~~~--------g~-----~~~a~~ 142 (447)
++... .+ .+ +-|+.....+..+.+... ++ ..++.+
T Consensus 206 ~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~ 285 (606)
T KOG0547|consen 206 VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALE 285 (606)
T ss_pred hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHH
Confidence 22111 11 11 223333333333322211 11 112222
Q ss_pred HhccCC--------------------CC-----c------hhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHH
Q 048090 143 MFDEIP--------------------VK-----N------SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLS 191 (447)
Q Consensus 143 ~~~~~~--------------------~~-----~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 191 (447)
.+..-. .+ | ..+...-...+.-.|+...|..-|+..++....++ ..|.
T Consensus 286 ~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI 364 (606)
T KOG0547|consen 286 ALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYI 364 (606)
T ss_pred HHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHH
Confidence 221110 01 1 11112222234456889999999999988643222 2377
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHH
Q 048090 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271 (447)
Q Consensus 192 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 271 (447)
.+...|...++.++..+.|......+ +.++.+|..-.+.+.-.+++++|..=|++.... .|.++..|-.+..+
T Consensus 365 ~~a~~y~d~~~~~~~~~~F~~A~~ld---p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L----~pe~~~~~iQl~~a 437 (606)
T KOG0547|consen 365 KRAAAYADENQSEKMWKDFNKAEDLD---PENPDVYYHRGQMRFLLQQYEEAIADFQKAISL----DPENAYAYIQLCCA 437 (606)
T ss_pred HHHHHHhhhhccHHHHHHHHHHHhcC---CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc----ChhhhHHHHHHHHH
Confidence 78888999999999999999999874 346778888888888899999999999987765 56677788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-------hhh--HHHHHHH
Q 048090 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG-------PEH--YSCLVDL 342 (447)
Q Consensus 272 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~--~~~l~~~ 342 (447)
.-+.+++++++..|++.++. ++--+..|+.....+...++++.|.+.|+.... +.|. ... --.++.
T Consensus 438 ~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~v~~~plV~Ka~l~- 512 (606)
T KOG0547|consen 438 LYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLIIVNAAPLVHKALLV- 512 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hccccccccccchhhhhhhHhh-
Confidence 88999999999999999886 455678899999999999999999999999874 3444 111 112221
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhC
Q 048090 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399 (447)
Q Consensus 343 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 399 (447)
+.-.+++..|.+++++.++.+ |....++..|...-.++|+.++|+++|++...+-
T Consensus 513 ~qwk~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 513 LQWKEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred hchhhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 113489999999999999988 8888899999999999999999999999987754
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=3.1e-11 Score=106.68 Aligned_cols=283 Identities=12% Similarity=0.012 Sum_probs=224.1
Q ss_pred CchhhHHHHHHHHHccCChhhHHHHhccCCCC---chhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHH
Q 048090 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVK---NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR 195 (447)
Q Consensus 119 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 195 (447)
.+........+-+...+++.+..++++.+.+. ....+..-|..+...|+..+-..+=.++.+. .+-.+.+|-++.-
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 34445555566677889999999999888744 4455666677888889988888877788776 2456678888888
Q ss_pred HHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhc
Q 048090 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275 (447)
Q Consensus 196 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 275 (447)
-|...|..++|.+.|.+....++. -...|-.+..+|.-.|..|.|...+..+.+... .....+--+..-|.+.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~---fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~----G~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT---FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP----GCHLPSLYLGMEYMRT 393 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc---ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc----CCcchHHHHHHHHHHh
Confidence 888889999999999998876433 355889999999999999999999988766633 3333344566678889
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc-CCCC----ChhhHHHHHHHHHHcCCH
Q 048090 276 GYFKEVIKLYEAMLMNGTKP-DEVAFVTVISACSHTGQVKLGIEYFEWMVHDY-KLEP----GPEHYSCLVDLLCRAGEL 349 (447)
Q Consensus 276 g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~ 349 (447)
++.+.|.++|.+.... .| |+..++-+.-.....+.+.+|..+|+.....- .+.+ -..+++.|..+|.+.+++
T Consensus 394 ~n~kLAe~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred ccHHHHHHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 9999999999998874 44 66677777766677899999999999886320 1111 234578899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHH
Q 048090 350 DKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413 (447)
Q Consensus 350 ~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 413 (447)
++|+..+++.+... |.+..++.+++-.|...|+++.|...|.+++-+.|+|..+-..|..+.
T Consensus 472 ~eAI~~~q~aL~l~--~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 472 EEAIDYYQKALLLS--PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHHHHcC--CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 99999999999887 899999999999999999999999999999999999977666665443
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.53 E-value=3.4e-11 Score=109.35 Aligned_cols=245 Identities=17% Similarity=0.161 Sum_probs=184.8
Q ss_pred cHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhh---hc-CCCChh-HHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCc
Q 048090 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKC---CN-LGNDVF-MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260 (447)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 260 (447)
-..+...+...|...|+++.|+.+++..++.- .| ..|... ..+.+...|...+++++|..+|+++.........+
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 34567778899999999999999999987751 11 123332 34457788999999999999999887765533222
Q ss_pred ----chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCC-CCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcC-
Q 048090 261 ----DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN-----GTK-PDE-VAFVTVISACSHTGQVKLGIEYFEWMVHDYK- 328 (447)
Q Consensus 261 ----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~~~-p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~- 328 (447)
-..+++.|..+|.+.|++++|...+++..+- |.. |.. ..++.+...|+..+++++|..+++...+...
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 3456778888999999999988888776431 222 222 3466777788899999999999988765432
Q ss_pred -CCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 048090 329 -LEPG----PEHYSCLVDLLCRAGELDKAWKLINEMLDRG------HGSSSVSMWGALLSACHDCGKFELGKLAAQKALE 397 (447)
Q Consensus 329 -~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 397 (447)
+.++ ..+++.|...|...|++++|.+++++++... ..+.....++.|...|.+.+++++|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 2222 4678999999999999999999999986542 1122234588999999999999999999987765
Q ss_pred h----C---CCchhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048090 398 L----D---PHNVGIYVMLSNLYAKFCMWDEIGQLRELMK 430 (447)
Q Consensus 398 ~----~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 430 (447)
. + |....+|..|+..|.+.|++++|+++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 2 4456789999999999999999999988775
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.51 E-value=3e-10 Score=104.21 Aligned_cols=404 Identities=13% Similarity=0.019 Sum_probs=268.1
Q ss_pred hhhhhHHHhhhhhhhhhcccccCCcchHHHhhccCCC---CCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCc-hh
Q 048090 12 LLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLD-TY 87 (447)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~ 87 (447)
...-|..+|..|.-+.++|| +++.+-+.|++..+ .....|+.+...+...|.-..|+.+++........|+ ..
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g---~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCG---QFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred hhcchHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 33446789999999999998 59999999988654 3345688888999999999999999988765433343 34
Q ss_pred hHHHHHHHhc-cCCchhHHHHHHHHHHHc--CC--CCchhhHHHHHHHHHccC-----------ChhhHHHHhccCC---
Q 048090 88 ALCSSLTAST-SVKDARFGKQVQAHVTKS--GW--LSSVFVGSALIDLYAKLL-----------LIHDAELMFDEIP--- 148 (447)
Q Consensus 88 ~~~~ll~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~--- 148 (447)
.+...-+.|. +.+..+++..+..+++.. +. ...+..|..+.-+|...- ...++.+.+++..
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444454 447778888777777662 11 122334444444443221 1234556666553
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHH
Q 048090 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228 (447)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 228 (447)
..|+...-.+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++..|+.+.+.....- +.|-....
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~---~~N~~l~~ 551 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF---GDNHVLMD 551 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh---hhhhhhch
Confidence 224444334444567788999999999999887656788888888888888999999999999888762 22222222
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhhhcc------------------c------CCCc-chhhHHHHHHHHHhcC---CHHH
Q 048090 229 SLIEMYGKCGLVTKALQVFNLAGHRLE------------------G------EINK-DVVLWTSMLGVYGRNG---YFKE 280 (447)
Q Consensus 229 ~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------~------~~~~-~~~~~~~l~~~~~~~g---~~~~ 280 (447)
.-++.-...++.++++.....+...-+ . +.+. ...++.-+..-....+ ..+.
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~ 631 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL 631 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence 222233334555555444332211100 0 0001 1111221111111000 0011
Q ss_pred HHHHHHHHHhCCCCC--C------HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHH
Q 048090 281 VIKLYEAMLMNGTKP--D------EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352 (447)
Q Consensus 281 a~~~~~~m~~~~~~p--~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 352 (447)
. +...-+.| + ...|......+.+.+..++|..-+.+..+. .+.....|......+...|.+++|
T Consensus 632 ~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 632 K------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred c------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHH
Confidence 0 11111122 2 123445566777888899998887777642 344577788888889999999999
Q ss_pred HHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHH--HHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048090 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKL--AAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMK 430 (447)
Q Consensus 353 ~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 430 (447)
.+.|......+ |+++.+..+++.++.+.|+...|.. ++..+++.+|.++.+|..++..+.+.|+.++|.+.|....
T Consensus 704 ~~af~~Al~ld--P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 704 KEAFLVALALD--PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 99999999887 9999999999999999999888888 9999999999999999999999999999999999999887
Q ss_pred H
Q 048090 431 E 431 (447)
Q Consensus 431 ~ 431 (447)
+
T Consensus 782 q 782 (799)
T KOG4162|consen 782 Q 782 (799)
T ss_pred h
Confidence 6
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.50 E-value=3e-11 Score=102.41 Aligned_cols=200 Identities=12% Similarity=0.083 Sum_probs=122.6
Q ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHH
Q 048090 188 FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267 (447)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 267 (447)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++.... .+.+...+..
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~ 104 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD---PDDYLAYLALALYYQQLGELEKAEDSFRRALTL----NPNNGDVLNN 104 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHH
Confidence 344455555556666666666666665541 223455555666666666666666666654443 2334455556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc
Q 048090 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKP-DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346 (447)
Q Consensus 268 l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 346 (447)
+...+...|++++|...+++.......| ....+..+..++...|++++|...+++.... .+.+...+..+...+...
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~ 182 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLR 182 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHc
Confidence 6666666667777776666666532112 2344555666667777777777777777643 122355666677777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhh
Q 048090 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398 (447)
Q Consensus 347 g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 398 (447)
|++++|...+++..... |++...+..++..+...|+.+.|..+.+.+...
T Consensus 183 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 183 GQYKDARAYLERYQQTY--NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 77777777777776653 555666666777777777777777776666544
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.50 E-value=1.1e-11 Score=117.71 Aligned_cols=232 Identities=11% Similarity=-0.045 Sum_probs=179.6
Q ss_pred cHhhHHHHHHHHh-----cCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHH---------hcCChHHHHHHHHhhh
Q 048090 186 DHFTLSALLRACA-----GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG---------KCGLVTKALQVFNLAG 251 (447)
Q Consensus 186 ~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~ 251 (447)
+...|...+.+.. ..+++++|...|++.++.+|+ +...+..+..++. ..+++++|...++++.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~---~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN---SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 3444555555421 234578999999999987433 4556666665554 2345889999999877
Q ss_pred hhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC
Q 048090 252 HRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331 (447)
Q Consensus 252 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 331 (447)
.. .+.+...+..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...++++.+. .|
T Consensus 332 ~l----dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P 403 (553)
T PRK12370 332 EL----DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DP 403 (553)
T ss_pred hc----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CC
Confidence 65 56678888899999999999999999999999864 224667888888999999999999999999854 56
Q ss_pred Ch-hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHH
Q 048090 332 GP-EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410 (447)
Q Consensus 332 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 410 (447)
+. ..+..++..+...|++++|...++++.... .|+++..+..+..++...|++++|...++++....|.+......+.
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~ 482 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLY 482 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 53 333444555777899999999999988664 2556666888999999999999999999998888888888888888
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 048090 411 NLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~ 431 (447)
..|...| ++|...++.+.+
T Consensus 483 ~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 483 AEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHhccH--HHHHHHHHHHHH
Confidence 8888888 478887777765
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.3e-09 Score=92.96 Aligned_cols=296 Identities=13% Similarity=-0.046 Sum_probs=209.9
Q ss_pred CchhHHHHHHHHHHHc-CCCCchhhHHHHHHHHHccCChhhHHHHhccCCCCchhhHH---HHHHHHHhcCCHHHHHHHH
Q 048090 100 KDARFGKQVQAHVTKS-GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCAN---ALLSGYCEAKLWAGGLELV 175 (447)
Q Consensus 100 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~ 175 (447)
++...+.+.+-.+... -++.+......+..++...|+.++|+-.|++...-|+.+.. ...-.+.+.|+.+....+.
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~ 289 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALM 289 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHH
Confidence 4444444443333322 25667778888889999999999999999887644433322 2233455778888887777
Q ss_pred HhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcc
Q 048090 176 RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255 (447)
Q Consensus 176 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 255 (447)
..+.... +-+...|-.-.......++++.|..+-++.++.+ +.+...+-.-...+...|++++|.-.|+.+...
T Consensus 290 ~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~---~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-- 363 (564)
T KOG1174|consen 290 DYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE---PRNHEALILKGRLLIALERHTQAVIAFRTAQML-- 363 (564)
T ss_pred HHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC---cccchHHHhccHHHHhccchHHHHHHHHHHHhc--
Confidence 7765432 1222222222333445678888888888887763 235556666667788899999999999877664
Q ss_pred cCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHh-ccCcHHHHHHHHHHHHHhcCCCCC-
Q 048090 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI-SACS-HTGQVKLGIEYFEWMVHDYKLEPG- 332 (447)
Q Consensus 256 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~- 332 (447)
.|-+..+|.-++.+|...|++.+|...-+..... .+.+..+...+. ..|. ...--++|..++++-. .+.|+
T Consensus 364 --ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y 437 (564)
T KOG1174|consen 364 --APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIY 437 (564)
T ss_pred --chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCcc
Confidence 4567889999999999999999998887776654 344666666553 3333 3334577888888776 45776
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHH
Q 048090 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410 (447)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 410 (447)
...-+.+...+...|+.+.+..++++.+..- | |....+.|+..+...+.+.+|...|..+++.+|.+..+..-|-
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~--~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLIIF--P-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHhhc--c-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 5666778888899999999999999988764 5 5555999999999999999999999999999998876655443
No 64
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.45 E-value=5.1e-09 Score=94.35 Aligned_cols=126 Identities=10% Similarity=-0.022 Sum_probs=63.2
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcC------CCCchhhHH
Q 048090 52 LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG------WLSSVFVGS 125 (447)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~ 125 (447)
..|...+......+-++-+..+|++.++. ++..-...+..+++.+++++|.+.+...+... .+.+...|.
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 34555555555555555555555555442 12223444455555555555555555543211 122333333
Q ss_pred HHHHHHHccCC---hhhHHHHhccCCCC--c--hhhHHHHHHHHHhcCCHHHHHHHHHhhhhc
Q 048090 126 ALIDLYAKLLL---IHDAELMFDEIPVK--N--SVCANALLSGYCEAKLWAGGLELVRLMPAL 181 (447)
Q Consensus 126 ~l~~~~~~~g~---~~~a~~~~~~~~~~--~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (447)
.+.+..++.-+ --....+++.+... | ...|+.|..-|.+.|.+++|..+|++....
T Consensus 215 elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 33333333211 11122233333211 2 235888888889999999988888887654
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.45 E-value=1.6e-11 Score=96.40 Aligned_cols=200 Identities=11% Similarity=0.030 Sum_probs=157.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048090 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304 (447)
Q Consensus 225 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 304 (447)
.+...|.-.|...|+...|..-+++..+. .|.+..+|..+...|.+.|+.+.|.+-|++...... -+..+.|...
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~----DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG 110 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEH----DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-Cccchhhhhh
Confidence 35666777888888998888888877665 566677888888888888988888888888887532 2556777777
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCC
Q 048090 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384 (447)
Q Consensus 305 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 384 (447)
.-+|..|++++|.+.|++...+....--..+|..+.-+..+.|+++.|.+.|++.++.. |+...+...+.....+.|+
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGD 188 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhccc
Confidence 77888888888988888888763333336778888888888888889998888888877 7777778888888888888
Q ss_pred ccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 385 FELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 385 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
+..|...++......+.+.......++.-.+.|+.+.+-+.=.++..
T Consensus 189 y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 189 YAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred chHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88888888888887777888888888888888888777665554443
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.41 E-value=5.1e-10 Score=103.01 Aligned_cols=263 Identities=14% Similarity=0.092 Sum_probs=180.9
Q ss_pred HHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhc--
Q 048090 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC-- 237 (447)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 237 (447)
..+...|++++|++.+++-... +......+......+.+.|+.++|..++..+++.+ +.+..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHhhhcc
Confidence 4456677888888877664443 23333445556666777788888888888887762 23444555555554222
Q ss_pred ---CChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH
Q 048090 238 ---GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF-KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313 (447)
Q Consensus 238 ---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 313 (447)
.+.+....+++++... -|.......+.-.+.....+ ..+...+..+...|+++ +|+.|-..|....+.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~-----yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEK-----YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKA 159 (517)
T ss_pred cccccHHHHHHHHHHHHHh-----CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHH
Confidence 2456667777765443 23322222222222222223 34556677777888653 566666666666666
Q ss_pred HHHHHHHHHHHHhc-------------CCCCChh--hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHH
Q 048090 314 KLGIEYFEWMVHDY-------------KLEPGPE--HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378 (447)
Q Consensus 314 ~~a~~~~~~~~~~~-------------~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~ 378 (447)
+...+++....... .-+|+.. ++.-+...|...|++++|++++++.+... |..+..|..-+..
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~Kari 237 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHH
Confidence 66666666654321 1134443 34556778889999999999999999987 9899999999999
Q ss_pred HHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 048090 379 CHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436 (447)
Q Consensus 379 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 436 (447)
+-..|++.+|...++.+.++++.|..+-+..+..+.++|+.++|.+++..+...+..|
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 9999999999999999999999999999999999999999999999999998766533
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.41 E-value=3.9e-10 Score=88.79 Aligned_cols=202 Identities=13% Similarity=0.061 Sum_probs=101.6
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHH
Q 048090 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269 (447)
Q Consensus 190 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 269 (447)
...+.-.|.+.|+...|.+-+++.++. -+.+..++..+...|.+.|+.+.|.+.|++...+ .+.+..+.|...
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~---DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----~p~~GdVLNNYG 110 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH---DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL----APNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc----CCCccchhhhhh
Confidence 333444455555555555555555554 2333445555555555555555555555554443 344445555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcC
Q 048090 270 GVYGRNGYFKEVIKLYEAMLMNGTKP-DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG-PEHYSCLVDLLCRAG 347 (447)
Q Consensus 270 ~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 347 (447)
.-+|..|++++|...|++....-.-| -..||..+.-+..+.|+++.|..+|++..+. .|+ ......+.+...+.|
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAG 187 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcc
Confidence 55555555555555555555431111 2234555555555555555555555555532 232 334445555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCch
Q 048090 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403 (447)
Q Consensus 348 ~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 403 (447)
++..|..+++.....+. ....+.-..+..-...|+-+.+.+.=.+..+..|.+.
T Consensus 188 ~y~~Ar~~~~~~~~~~~--~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 188 DYAPARLYLERYQQRGG--AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred cchHHHHHHHHHHhccc--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 55555555555555442 2333344444555555555555554444444444433
No 68
>PF13041 PPR_2: PPR repeat family
Probab=99.41 E-value=6.3e-13 Score=81.28 Aligned_cols=50 Identities=28% Similarity=0.436 Sum_probs=43.7
Q ss_pred CCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhcc
Q 048090 49 RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTS 98 (447)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 98 (447)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888888888888888888888888888888888888888888888864
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.40 E-value=3.3e-10 Score=98.78 Aligned_cols=235 Identities=10% Similarity=-0.056 Sum_probs=161.5
Q ss_pred hcCCHHHHHHHHHhhhhcC-CCCc--HhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCCh
Q 048090 164 EAKLWAGGLELVRLMPALG-LDYD--HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240 (447)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (447)
..+..+.++.-+.++.... ..|+ ...|..+...+...|++++|...|++.++.. +.+...|+.+...+...|++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~---P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR---PDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHCCCH
Confidence 3466777888888877542 2222 3457777778888999999999999998873 34678899999999999999
Q ss_pred HHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048090 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320 (447)
Q Consensus 241 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 320 (447)
++|...|++.... .+.+..+|..+..++...|++++|.+.|++..+. .|+..........+...+++++|...|
T Consensus 115 ~~A~~~~~~Al~l----~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l 188 (296)
T PRK11189 115 DAAYEAFDSVLEL----DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENL 188 (296)
T ss_pred HHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHH
Confidence 9999999977664 4445677888888888999999999999998875 444322222222344567899999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC---C--CCCCchHhHHHHHHHHHhcCCccHHHHHHHHH
Q 048090 321 EWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR---G--HGSSSVSMWGALLSACHDCGKFELGKLAAQKA 395 (447)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 395 (447)
.+.... ..|+...+ . ......|+..++ +.+..+.+. . ..|....+|..++..+.+.|++++|...|+++
T Consensus 189 ~~~~~~--~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 189 KQRYEK--LDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHhh--CCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 776543 23332222 2 223345665444 344444321 1 11344567899999999999999999999999
Q ss_pred hhhCCC-chhHHHHHHHHH
Q 048090 396 LELDPH-NVGIYVMLSNLY 413 (447)
Q Consensus 396 ~~~~~~-~~~~~~~l~~~~ 413 (447)
++.+|+ .+.....++...
T Consensus 263 l~~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 263 LANNVYNFVEHRYALLELA 281 (296)
T ss_pred HHhCCchHHHHHHHHHHHH
Confidence 999875 444444455443
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.40 E-value=3.9e-10 Score=98.29 Aligned_cols=94 Identities=15% Similarity=0.098 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 048090 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP-DEVAFVTVI 304 (447)
Q Consensus 226 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll 304 (447)
.|..+...|...|+.++|...|++.... .+.+...|+.+...+...|++++|...|++..+. .| +..++..+.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg 139 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALAL----RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRG 139 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3444555555555555555555544432 3334455555555555555555555555555543 22 234444444
Q ss_pred HHHhccCcHHHHHHHHHHHHH
Q 048090 305 SACSHTGQVKLGIEYFEWMVH 325 (447)
Q Consensus 305 ~~~~~~~~~~~a~~~~~~~~~ 325 (447)
.++...|++++|.+.|++..+
T Consensus 140 ~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 140 IALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 455555555555555555543
No 71
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.39 E-value=6.7e-09 Score=93.76 Aligned_cols=385 Identities=12% Similarity=0.023 Sum_probs=204.4
Q ss_pred CCcchHHHhhccCC---CCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHH
Q 048090 34 KNLGTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQA 110 (447)
Q Consensus 34 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 110 (447)
|+.++|........ ..+.+.|..+.-.+-...++++|++.|.....-+ +-|...+.-+.-.-++.|+++.......
T Consensus 55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~ 133 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRN 133 (700)
T ss_pred cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34555555544332 2344555555555555566666666666665532 2233444444444455556655555555
Q ss_pred HHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCC-----CCchhhHHHH------HHHHHhcCCHHHHHHHHHhhh
Q 048090 111 HVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP-----VKNSVCANAL------LSGYCEAKLWAGGLELVRLMP 179 (447)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~ 179 (447)
+..+.. +.....|..+..++.-.|+...|..++++.. .++...|... .......|..++|.+.+..-.
T Consensus 134 ~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e 212 (700)
T KOG1156|consen 134 QLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE 212 (700)
T ss_pred HHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh
Confidence 555431 2223344455555555566666655554433 1222222111 122344555555555554433
Q ss_pred hcCCCCcHhhH-HHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHH-HHHHhhhhhcccC
Q 048090 180 ALGLDYDHFTL-SALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL-QVFNLAGHRLEGE 257 (447)
Q Consensus 180 ~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~ 257 (447)
.. ..|...+ ..-...+.+.+++++|..++..++.. .+.+...|..+..++.+..+.-+++ .+|......
T Consensus 213 ~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r---nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~---- 283 (700)
T KOG1156|consen 213 KQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER---NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK---- 283 (700)
T ss_pred hH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh---CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc----
Confidence 22 1122221 12233345556666666666666665 1223333333334443222222222 444433221
Q ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc-C--------
Q 048090 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY-K-------- 328 (447)
Q Consensus 258 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~-------- 328 (447)
.+.....-..=++......-.+..-.++..+.+.|+++ ++..+...|-.....+-..++...+.... |
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccc
Confidence 11111111111111111122333445566666777654 33333333332222221111111111100 1
Q ss_pred ----CCCChhhH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCc
Q 048090 329 ----LEPGPEHY--SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402 (447)
Q Consensus 329 ----~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 402 (447)
-+|....| -.++..+-+.|+++.|..+++..+..- |.-+..|..-.+.+...|++++|..+++++.+++-+|
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT--PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD 438 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT--PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD 438 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC--chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh
Confidence 14555554 456778889999999999999999875 8888888888899999999999999999999999888
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 048090 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434 (447)
Q Consensus 403 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 434 (447)
..+-.--+.-..++++.++|.++...+...|.
T Consensus 439 R~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 439 RAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 87777778888899999999999999887764
No 72
>PF13041 PPR_2: PPR repeat family
Probab=99.38 E-value=1.9e-12 Score=79.12 Aligned_cols=50 Identities=30% Similarity=0.602 Sum_probs=42.9
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 048090 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309 (447)
Q Consensus 260 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 309 (447)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888864
No 73
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.37 E-value=1.7e-10 Score=107.27 Aligned_cols=254 Identities=11% Similarity=0.000 Sum_probs=148.1
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCCc
Q 048090 72 KTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151 (447)
Q Consensus 72 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 151 (447)
.+|-.+...|+.|+..||..+|.-||..|+++.|- +|.-|.-...+.+...++.++.+...+++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46677888899999999999999999999999988 8888888888888889999999888888888776 778
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHh-hh-------hcCCCCcHhhHHHHHHHH--------------hcCCcHHHHHHH
Q 048090 152 SVCANALLSGYCEAKLWAGGLELVRL-MP-------ALGLDYDHFTLSALLRAC--------------AGLSAAEFGRQV 209 (447)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~a~~~~~~-~~-------~~~~~~~~~~~~~l~~~~--------------~~~~~~~~a~~~ 209 (447)
..+|..|..+|...||... ++..++ |. ..|+.....-+-..++++ .-.|-++.+.++
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998765 333332 21 122211111111111111 111222222222
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048090 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289 (447)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 289 (447)
+..+.... .. .+... +++-.... ..-..++.+...... ..|+..+|.+.+.+-...|+.+.|..++.+|+
T Consensus 162 l~~~Pvsa-~~--~p~~v--fLrqnv~~--ntpvekLl~~cksl~---e~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 162 LAKVPVSA-WN--APFQV--FLRQNVVD--NTPVEKLLNMCKSLV---EAPTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HhhCCccc-cc--chHHH--HHHHhccC--CchHHHHHHHHHHhh---cCCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 22211110 00 00000 11111111 111222222111110 14666666666666666666666766777776
Q ss_pred hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC
Q 048090 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348 (447)
Q Consensus 290 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 348 (447)
+.|++.+..-|-.|+-+ .++...+..++.-|... |+.|+..|+...+..+...|.
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchh
Confidence 66666666655555544 55666666666666555 666666666665555555443
No 74
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=8e-11 Score=104.56 Aligned_cols=224 Identities=14% Similarity=0.061 Sum_probs=184.0
Q ss_pred HhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcC
Q 048090 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNG 276 (447)
Q Consensus 197 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 276 (447)
+.+.|++.+|.-.|+..++.+| -+...|..|.......++-..|+..+.+..+. .+.+......|.-+|...|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP---~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L----dP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDP---QHAEAWQKLGITQAENENEQNAISALRRCLEL----DPTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhCh---HHHHHHHHhhhHhhhccchHHHHHHHHHHHhc----CCccHHHHHHHHHHHhhhh
Confidence 4577889999999999999843 47889999999999999999999999877775 5667888888999999999
Q ss_pred CHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC
Q 048090 277 YFKEVIKLYEAMLMNGTK--------PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348 (447)
Q Consensus 277 ~~~~a~~~~~~m~~~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 348 (447)
.-..|++.++.-+....+ ++...-.. ..+.....+....++|-++....+..+|+.+...|.-.|--.|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999999999888664311 00000000 12233334556667777776665666788888889888999999
Q ss_pred HHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHH
Q 048090 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLREL 428 (447)
Q Consensus 349 ~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 428 (447)
+++|...|+.++... |+|..+|+.|+..++...+.++|+..|++++++.|.-+++...|+..|...|.+++|.+.|-.
T Consensus 446 fdraiDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 999999999999877 999999999999999999999999999999999999999999999999999999999988776
Q ss_pred HHH
Q 048090 429 MKE 431 (447)
Q Consensus 429 m~~ 431 (447)
.+.
T Consensus 524 AL~ 526 (579)
T KOG1125|consen 524 ALS 526 (579)
T ss_pred HHH
Confidence 654
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.37 E-value=1.9e-10 Score=104.54 Aligned_cols=244 Identities=14% Similarity=0.096 Sum_probs=182.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhhhhc-----C-CCCcHhhHH-HHHHHHhcCCcHHHHHHHHHHHHHhhh-----cCC
Q 048090 154 CANALLSGYCEAKLWAGGLELVRLMPAL-----G-LDYDHFTLS-ALLRACAGLSAAEFGRQVHAYMIRKCC-----NLG 221 (447)
Q Consensus 154 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~ 221 (447)
+...+...|...|+++.|..+++...+. | ..|...+.. .+...|...+++++|..+|+.+..... ..+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4555889999999999999999887654 2 134443333 366778899999999999999987521 222
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhhhhhccc---CCCcchh-hHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC
Q 048090 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG---EINKDVV-LWTSMLGVYGRNGYFKEVIKLYEAMLMN---GTK 294 (447)
Q Consensus 222 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~~ 294 (447)
.-..+++.|...|.+.|++++|...++.+...... ...|.+. .++.+...++..+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 23457788888999999999999999877665443 2233333 3667778889999999999999876543 122
Q ss_pred CC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhc----C-CCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHh---
Q 048090 295 PD----EVAFVTVISACSHTGQVKLGIEYFEWMVHDY----K-LEPG-PEHYSCLVDLLCRAGELDKAWKLINEMLD--- 361 (447)
Q Consensus 295 p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 361 (447)
++ ..+++.|...|...|++++|.+++++++... + ..+. ...++.|...|.+.++..+|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 4679999999999999999999999987642 1 1222 45678888999999999999999888543
Q ss_pred -CCC-CCCchHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 048090 362 -RGH-GSSSVSMWGALLSACHDCGKFELGKLAAQKALE 397 (447)
Q Consensus 362 -~~~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 397 (447)
.|. .|+...+|..|+..|...|+++.|.++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 231 144556799999999999999999999998875
No 76
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=2.1e-09 Score=100.15 Aligned_cols=213 Identities=17% Similarity=0.060 Sum_probs=132.4
Q ss_pred CcchhHHHhhhhhhhhHHHhhhhhhhhhcccccCCcchHHHhhccCCCC----CCccHHHHHHHHHhCCChhhHHHHHHH
Q 048090 1 NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPR----NPLPFNVVISDFCRNGSPLYALKTFSF 76 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 76 (447)
|+|+-+...|+.|++ ++|.+++.-|+..| +++.|- +|..|.-. +...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnR--vtyqsLiarYc~~g---dieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNR--VTYQSLIARYCTKG---DIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----- 79 (1088)
T ss_pred hHHHHHHHhcCCCch--hhHHHHHHHHcccC---CCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----
Confidence 467888889998765 99999999999988 587776 77766421 2334555555555555544443
Q ss_pred HHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHH-------cC-----------------CCCchhhHHHHHHHHH
Q 048090 77 MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK-------SG-----------------WLSSVFVGSALIDLYA 132 (447)
Q Consensus 77 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~-----------------~~~~~~~~~~l~~~~~ 132 (447)
.|...||..++.+|...||+.....+-+.+.. .| .-||.. ..+....
T Consensus 80 ------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv 150 (1088)
T KOG4318|consen 80 ------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLV 150 (1088)
T ss_pred ------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHH
Confidence 34455555555555555554332111111110 11 011111 1111112
Q ss_pred ccCChhhHHHHh---------------------------------ccCC-CCchhhHHHHHHHHHhcCCHHHHHHHHHhh
Q 048090 133 KLLLIHDAELMF---------------------------------DEIP-VKNSVCANALLSGYCEAKLWAGGLELVRLM 178 (447)
Q Consensus 133 ~~g~~~~a~~~~---------------------------------~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (447)
-.|-++.+++++ .... .++..+|.+++.+-..+|+.+.|..++.+|
T Consensus 151 ~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 151 LEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 222222222222 2222 267888999999999999999999999999
Q ss_pred hhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcC
Q 048090 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238 (447)
Q Consensus 179 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 238 (447)
.+.|++.+.+-|-.++-+ .++...++.++.-|... |+.|+..|+...+..+..+|
T Consensus 231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~--gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK--GVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh--cCCCCcchhHHHHHhhhcch
Confidence 999988888777666654 67778888888888887 78888888776666555533
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.35 E-value=2.9e-09 Score=98.19 Aligned_cols=292 Identities=13% Similarity=0.063 Sum_probs=179.4
Q ss_pred HHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHcc----
Q 048090 59 SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKL---- 134 (447)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 134 (447)
..+...|++++|++.++.-... +......+......+.+.|+.++|..+|+.+++.+ |.+..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 4456678888888888665443 33233445556667778888888888888888875 33333444444444222
Q ss_pred -CChhhHHHHhccCCCC--chhhHHHHHHHHHhcCCH-HHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHH
Q 048090 135 -LLIHDAELMFDEIPVK--NSVCANALLSGYCEAKLW-AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210 (447)
Q Consensus 135 -g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 210 (447)
.+.+...++++++... .......+.-.+.....+ ..+...+..+...|+++ +|..+-..|......+-..+++
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 2455566666665421 111111111111111122 23445566677777644 4555656666555555556666
Q ss_pred HHHHHhhh------------cCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcC
Q 048090 211 AYMIRKCC------------NLGNDV--FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNG 276 (447)
Q Consensus 211 ~~~~~~~~------------~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 276 (447)
........ .-+|+. .++.-+.+.|...|++++|++++++.... .|..+..|..-...+-..|
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h----tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH----TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHCC
Confidence 66554310 112333 34456677788889999999999877664 4444677888888888899
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhh------H--HHHHHHHHHcCC
Q 048090 277 YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH------Y--SCLVDLLCRAGE 348 (447)
Q Consensus 277 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~--~~l~~~~~~~g~ 348 (447)
++.+|.+.++..+..... |-..=+..+..+.+.|++++|.+++....+. +..|.... | .....+|.+.|+
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999888876432 5555566667778889999999888887654 43332221 2 344567888888
Q ss_pred HHHHHHHHHHHHh
Q 048090 349 LDKAWKLINEMLD 361 (447)
Q Consensus 349 ~~~A~~~~~~~~~ 361 (447)
+..|+..|....+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877665543
No 78
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.32 E-value=8.5e-09 Score=86.04 Aligned_cols=293 Identities=12% Similarity=0.048 Sum_probs=157.8
Q ss_pred HHHHHHccCChhhHHHHhccCCCCchhhHHHHH---HHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHH-HHHHHHhcCCc
Q 048090 127 LIDLYAKLLLIHDAELMFDEIPVKNSVCANALL---SGYCEAKLWAGGLELVRLMPALGLDYDHFTLS-ALLRACAGLSA 202 (447)
Q Consensus 127 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~ 202 (447)
+...+...|++.+|+.-|....+-|+..|.++. ..|...|+...|+.-+.+..+. +||-..-. .-...+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 344444455555555555555555554444442 3355555555555555555543 44432111 11223445566
Q ss_pred HHHHHHHHHHHHHhhhcCCCChhHH------------HHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHH
Q 048090 203 AEFGRQVHAYMIRKCCNLGNDVFMQ------------SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270 (447)
Q Consensus 203 ~~~a~~~~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~ 270 (447)
++.|..=|+.+++..|+.......+ ...+..+.-.|+...|+..+..+.+. .+-|...+..-..
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi----~~Wda~l~~~Rak 197 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI----QPWDASLRQARAK 197 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc----CcchhHHHHHHHH
Confidence 6666666666555532111111111 12233344556666666666655553 4556666666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHH----HH-------
Q 048090 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS----CL------- 339 (447)
Q Consensus 271 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l------- 339 (447)
+|...|++..|+.-++...+.. .-+..++.-+-..+...|+.+.++...++.+ .+.|+....- .|
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHH
Confidence 7777777777666666554432 2233444445555556666666666665555 3455533211 11
Q ss_pred --HHHHHHcCCHHHHHHHHHHHHhCCCCCC----chHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHH
Q 048090 340 --VDLLCRAGELDKAWKLINEMLDRGHGSS----SVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413 (447)
Q Consensus 340 --~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 413 (447)
+....+.+++.++++..+..++.. |. ....+..+-.++...|++.+|++...++++.+|+|..++.--+.+|
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~e--p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKNE--PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAY 351 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcC--CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 112234566666666666666554 33 1123444555666667777777777777777777777777777777
Q ss_pred HhcCChHHHHHHHHHHHH
Q 048090 414 AKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 414 ~~~g~~~~A~~~~~~m~~ 431 (447)
.-...++.|+.-|+...+
T Consensus 352 l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALE 369 (504)
T ss_pred hhhHHHHHHHHHHHHHHh
Confidence 777777777777766654
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=6.5e-08 Score=82.91 Aligned_cols=268 Identities=9% Similarity=-0.031 Sum_probs=200.9
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhh-HHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHH
Q 048090 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT-LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227 (447)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 227 (447)
..|+.....+...+...|+.++|...|++.... .|+..+ ...-.-.+.+.|+++....+...+... .......|
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~---~~~ta~~w 303 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK---VKYTASHW 303 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh---hhcchhhh
Confidence 347778888999999999999999999988764 343322 112222345778888888888877765 22334444
Q ss_pred HHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048090 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307 (447)
Q Consensus 228 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 307 (447)
..-+.......++..|+.+-++.... .+.++..+-.-...+...|++++|.-.|+..+... +-+...|..|+.+|
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~----~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsY 378 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDS----EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSY 378 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhcc----CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHH
Confidence 44555566778889998888866554 45566667666778889999999999999987742 23678999999999
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCChhhHHHHH-HHHH-HcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCc
Q 048090 308 SHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV-DLLC-RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385 (447)
Q Consensus 308 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 385 (447)
...|++.+|...-+...+. ++.+..+...+. ..+. ...--++|..++++.++.. |.-..+.+.+...|...|..
T Consensus 379 LA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~--P~Y~~AV~~~AEL~~~Eg~~ 454 (564)
T KOG1174|consen 379 LAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN--PIYTPAVNLIAELCQVEGPT 454 (564)
T ss_pred HhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC--CccHHHHHHHHHHHHhhCcc
Confidence 9999999998887777654 344555555442 2232 2233588999999988876 88888899999999999999
Q ss_pred cHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 386 ELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 386 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
+.+..++++.+...| |...++.|++.+...+.+++|++.|.....
T Consensus 455 ~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 455 KDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred chHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999998776 566789999999999999999988876654
No 80
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=6.6e-09 Score=91.87 Aligned_cols=369 Identities=15% Similarity=0.119 Sum_probs=208.5
Q ss_pred CCcchHHHhhccC---CCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCc-hhhHHHHHHHhccCCchhHHHHHH
Q 048090 34 KNLGTLTNCLKFL---NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLD-TYALCSSLTASTSVKDARFGKQVQ 109 (447)
Q Consensus 34 ~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 109 (447)
|+++.|...|.+. .++|-+.|..-..+|++.|++++|++=-.+-++ +.|+ ...|.....++.-.|++++|...|
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay 93 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILAY 93 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHHH
Confidence 4799999999874 467888899999999999999999886666665 4555 467899999999999999999999
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhcc------CC-CC------chhhHHHHHHHHHhc----------C
Q 048090 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE------IP-VK------NSVCANALLSGYCEA----------K 166 (447)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~------~~-~~------~~~~~~~l~~~~~~~----------~ 166 (447)
.+-++.. +.+...++.+..++... ..+.+.|.. +. .| ....|..++..+-+. .
T Consensus 94 ~~GL~~d-~~n~~L~~gl~~a~~~~---~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~ 169 (539)
T KOG0548|consen 94 SEGLEKD-PSNKQLKTGLAQAYLED---YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDP 169 (539)
T ss_pred HHHhhcC-CchHHHHHhHHHhhhHH---HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccH
Confidence 9988763 44555666676666111 011111111 10 00 112233333222111 0
Q ss_pred CHHHHHHHHHhh-----hhcC-------CCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHH
Q 048090 167 LWAGGLELVRLM-----PALG-------LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234 (447)
Q Consensus 167 ~~~~a~~~~~~~-----~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 234 (447)
+...+.-.+... ...| ..|.. +. ...........+.. ....-..-...+.++.
T Consensus 170 r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~-----------~~---~~~~~~~~d~~ee~-~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 170 RLMKADGQLKGVDELLFYASGIEILASMAEPCK-----------QE---HNGFPIIEDNTEER-RVKEKAHKEKELGNAA 234 (539)
T ss_pred HHHHHHHHHhcCccccccccccccCCCCCCccc-----------cc---CCCCCccchhHHHH-HHHHhhhHHHHHHHHH
Confidence 111111111100 0001 11100 00 00000000000000 0000011123344444
Q ss_pred HhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-------HHHHHHH
Q 048090 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF-------VTVISAC 307 (447)
Q Consensus 235 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-------~~ll~~~ 307 (447)
.+..+++.|++.+...... ..+..-++....+|...|.+..+...-....+.|.. ...-| ..+..++
T Consensus 235 ykkk~f~~a~q~y~~a~el-----~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~ 308 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALEL-----ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAY 308 (539)
T ss_pred HHhhhHHHHHHHHHHHHhH-----hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhh
Confidence 4555555555555544332 133333444445555555555544444444333311 11111 1122233
Q ss_pred hccCcHHHHHHHHHHHHHhc-----------------------CCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048090 308 SHTGQVKLGIEYFEWMVHDY-----------------------KLEPGP-EHYSCLVDLLCRAGELDKAWKLINEMLDRG 363 (447)
Q Consensus 308 ~~~~~~~~a~~~~~~~~~~~-----------------------~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 363 (447)
.+.++++.++..|++....+ -+.|.. .--..-...+.+.|++..|...|.+++..+
T Consensus 309 ~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 309 TKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred hhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 44445555555555544321 112221 001112345678899999999999999888
Q ss_pred CCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 364 HGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 364 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
|+|...|....-+|.+.|.+..|..-.+..++++|+....|..=+.++....+|++|.+.|++..+
T Consensus 389 --P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 389 --PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred --CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998888888889999999998888765
No 81
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=8.7e-08 Score=85.86 Aligned_cols=397 Identities=11% Similarity=0.063 Sum_probs=212.6
Q ss_pred hhhhhhhhcccccCCcchHHHhhccCC---CCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhc
Q 048090 21 SRLMLPYTTCRHKKNLGTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTAST 97 (447)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 97 (447)
..++.-..+.+..+++++|.+....+. +.++..+.+=+-++.+.++|++|+.+.+.-... ..+...+..-.-+..
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence 456666666677778999988877753 455666777777788888888888655433211 111111111122334
Q ss_pred cCCchhHHHHHHHHHHHcCCCCch-hhHHHHHHHHHccCChhhHHHHhccCCCCc-------------------------
Q 048090 98 SVKDARFGKQVQAHVTKSGWLSSV-FVGSALIDLYAKLLLIHDAELMFDEIPVKN------------------------- 151 (447)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------------------------- 151 (447)
+.+..++|+..+. |..++. .+...-...+.+.|++++|..+|+.+.+.+
T Consensus 91 rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q 165 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQ 165 (652)
T ss_pred HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHH
Confidence 5677888877776 233332 244555566777888888888887774221
Q ss_pred ------hhhHHHH---HHHHHhcCCHHHHHHHHHhhhhcCC----CCcH--hhH--------HHHHHHHhcCCcHHHHHH
Q 048090 152 ------SVCANAL---LSGYCEAKLWAGGLELVRLMPALGL----DYDH--FTL--------SALLRACAGLSAAEFGRQ 208 (447)
Q Consensus 152 ------~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~--~~~--------~~l~~~~~~~~~~~~a~~ 208 (447)
..+|..+ ...++..|++.+|+++++...+.+. ..|. .-+ ..+.-.+-..|+.++|.+
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 1122222 2335566777777777777633211 1111 111 112223446677777777
Q ss_pred HHHHHHHhhhcCCCChhH-HHHHHHHHHhcCChH-HHHHHHHh------------hhhh---------------------
Q 048090 209 VHAYMIRKCCNLGNDVFM-QSSLIEMYGKCGLVT-KALQVFNL------------AGHR--------------------- 253 (447)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~-~A~~~~~~------------~~~~--------------------- 253 (447)
++...++..+.-.|...+ -|.|+..-....-++ .++..++. +...
T Consensus 246 iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q 325 (652)
T KOG2376|consen 246 IYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQ 325 (652)
T ss_pred HHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 777777763221111111 122221111000000 00111100 0000
Q ss_pred ---cccCCCcc--hhhHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH-----
Q 048090 254 ---LEGEINKD--VVLWTSMLGVY--GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFE----- 321 (447)
Q Consensus 254 ---~~~~~~~~--~~~~~~l~~~~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~----- 321 (447)
.....++. ...+.+++... ++...+..+.+++...-+....-.....-..+......|+++.|.+++.
T Consensus 326 ~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~ 405 (652)
T KOG2376|consen 326 VRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLES 405 (652)
T ss_pred HHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 00001111 11122222221 1222455566666665553222123344455566677889999988888
Q ss_pred ---HHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCchHhHHHHHHHHHhcCCccHHHHHHH
Q 048090 322 ---WMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRG-----HGSSSVSMWGALLSACHDCGKFELGKLAAQ 393 (447)
Q Consensus 322 ---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 393 (447)
.+.+- .-.+.+-..+...+.+.++.+.|..++.+.+..- -.+.-..++.-+...-.+.|+.++|...++
T Consensus 406 ~~ss~~~~---~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le 482 (652)
T KOG2376|consen 406 WKSSILEA---KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE 482 (652)
T ss_pred hhhhhhhh---ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH
Confidence 44322 2334445556667777777666776666654220 001122234555556667899999999999
Q ss_pred HHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHH
Q 048090 394 KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLREL 428 (447)
Q Consensus 394 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 428 (447)
++++.+|++..+...++.+|++. +.+.|..+-+.
T Consensus 483 el~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 483 ELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 99999999999999999888776 56777655443
No 82
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.26 E-value=1.2e-09 Score=93.70 Aligned_cols=253 Identities=12% Similarity=0.050 Sum_probs=153.1
Q ss_pred HHHHccCChhhHHHHhc--cCCC-CchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHH
Q 048090 129 DLYAKLLLIHDAELMFD--EIPV-KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF 205 (447)
Q Consensus 129 ~~~~~~g~~~~a~~~~~--~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 205 (447)
+-+.-.|++..++.-.+ .... .+......+.+++...|+++.++ .++.... .|.......+...+....+.+.
T Consensus 9 rn~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 33445677777775443 1111 13344556677788888877544 3443333 5665555555555544344444
Q ss_pred HHHHHHHHHHhhhcCC-CChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHH
Q 048090 206 GRQVHAYMIRKCCNLG-NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284 (447)
Q Consensus 206 a~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 284 (447)
+..-++..... ... .+.........++...|++++|++++.. ..+.......+.+|.+.++++.|.+.
T Consensus 85 ~l~~l~~~~~~--~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~---------~~~lE~~al~Vqi~L~~~R~dlA~k~ 153 (290)
T PF04733_consen 85 ALEELKELLAD--QAGESNEIVQLLAATILFHEGDYEEALKLLHK---------GGSLELLALAVQILLKMNRPDLAEKE 153 (290)
T ss_dssp HHHHHHHCCCT--S---CHHHHHHHHHHHHCCCCHHHHHHCCCTT---------TTCHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHh--ccccccHHHHHHHHHHHHHcCCHHHHHHHHHc---------cCcccHHHHHHHHHHHcCCHHHHHHH
Confidence 44444433332 111 2333333444566677888888877652 14556667778888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048090 285 YEAMLMNGTKPDEVAFVTVISACSH----TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360 (447)
Q Consensus 285 ~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 360 (447)
++.|.+. ..| .+...+..++.. .+.+..|..+|+++.. ...+++.+.+.+..++...|++++|.+++.+..
T Consensus 154 l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 154 LKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 8888763 333 444445554432 3458888888888754 345677778888888888888888888888877
Q ss_pred hCCCCCCchHhHHHHHHHHHhcCCc-cHHHHHHHHHhhhCCCch
Q 048090 361 DRGHGSSSVSMWGALLSACHDCGKF-ELGKLAAQKALELDPHNV 403 (447)
Q Consensus 361 ~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~ 403 (447)
..+ |.++.+...++.+....|+. +.+.+.+.++....|..+
T Consensus 229 ~~~--~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 229 EKD--PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp CC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred Hhc--cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 665 77888788888887777777 556677777777777644
No 83
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=4.6e-08 Score=82.15 Aligned_cols=164 Identities=9% Similarity=-0.013 Sum_probs=84.7
Q ss_pred HHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChh
Q 048090 59 SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIH 138 (447)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 138 (447)
.++.+.|++++|+.++.-+.... .|+...+..+..+..-.|.+.+|.++-... +.++-....++..-.+.++-+
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk 138 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEK 138 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHH
Confidence 34455566666666666555432 334444444444444445555555544332 122222233344444555544
Q ss_pred hHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHH-HHHHhcCCcHHHHHHHHHHHHHhh
Q 048090 139 DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL-LRACAGLSAAEFGRQVHAYMIRKC 217 (447)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~ 217 (447)
+-..+-+.+... ..---+|.+..-..-.+++|+++|.+.... .|+-...+.- .-+|.+..-++.+.+++.-.++.
T Consensus 139 ~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q- 214 (557)
T KOG3785|consen 139 RILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ- 214 (557)
T ss_pred HHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-
Confidence 444443333321 122223344433445688999999888765 3444444433 34567777788888888887776
Q ss_pred hcCCCChhHHHHHHHHH
Q 048090 218 CNLGNDVFMQSSLIEMY 234 (447)
Q Consensus 218 ~~~~~~~~~~~~l~~~~ 234 (447)
++.++...|..+...
T Consensus 215 --~pdStiA~NLkacn~ 229 (557)
T KOG3785|consen 215 --FPDSTIAKNLKACNL 229 (557)
T ss_pred --CCCcHHHHHHHHHHH
Confidence 444445444444333
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.23 E-value=8.3e-08 Score=86.97 Aligned_cols=91 Identities=7% Similarity=0.104 Sum_probs=45.4
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcc--hhhHHHHHHH
Q 048090 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD--VVLWTSMLGV 271 (447)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~l~~~ 271 (447)
...+...|++++|...+++..+. .+.+...+..+..++...|++++|...+++....... .++ ...|..+...
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~---~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~ 195 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALEL---NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHH
Confidence 33445555555555555555554 1223444555555555556666666555543332110 111 1223345555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 048090 272 YGRNGYFKEVIKLYEAML 289 (447)
Q Consensus 272 ~~~~g~~~~a~~~~~~m~ 289 (447)
+...|++++|..++++..
T Consensus 196 ~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 196 YLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHCCCHHHHHHHHHHHh
Confidence 566666666666666654
No 85
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.22 E-value=7.8e-08 Score=80.44 Aligned_cols=315 Identities=14% Similarity=0.090 Sum_probs=181.0
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHH---HHhccCCchhHHHHHHHHHHHcCCCCchhhHH-HHHH
Q 048090 54 FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL---TASTSVKDARFGKQVQAHVTKSGWLSSVFVGS-ALID 129 (447)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~ 129 (447)
.--+...+..+|++..|+.-|....+- |+..|..+. ..|...|+-..|+.=+...++. +||-..-. .-..
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 344566666777777777777766653 333333333 2456667777777777766663 55543221 1224
Q ss_pred HHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHH
Q 048090 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209 (447)
Q Consensus 130 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 209 (447)
.+.+.|.++.|..=|+.+...++.- +....++.+.--.++-. .....+..+...|+...|+..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhHHHH
Confidence 4566777777776666655322100 00011111100000000 111122233445666666666
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048090 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289 (447)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 289 (447)
...+++. .+-|...+..-..+|...|++..|+.=++..... ...++..+--+-..+...|+.+.++...++..
T Consensus 178 i~~llEi---~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL----s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 178 ITHLLEI---QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL----SQDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred HHHHHhc---CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----cccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6666664 3345666666666666666666666555544333 23344455555555666666666666666665
Q ss_pred hCCCCCCHHH----HHHH---------HHHHhccCcHHHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHHcCCHHH
Q 048090 290 MNGTKPDEVA----FVTV---------ISACSHTGQVKLGIEYFEWMVHDYKLEPG-----PEHYSCLVDLLCRAGELDK 351 (447)
Q Consensus 290 ~~~~~p~~~~----~~~l---------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~ 351 (447)
+ +.||... |..+ +......++|.++.+..+.+.+. .|. ...+..+-.++...|++.+
T Consensus 251 K--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~e 325 (504)
T KOG0624|consen 251 K--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGE 325 (504)
T ss_pred c--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHH
Confidence 5 3444321 1111 11223456677777777776643 443 2334455567778888999
Q ss_pred HHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhH
Q 048090 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405 (447)
Q Consensus 352 A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 405 (447)
|++...+.+... |+++.++.--..+|.-...++.|+.-|+++.+.+++|..+
T Consensus 326 AiqqC~evL~~d--~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 326 AIQQCKEVLDID--PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHHHHhcC--chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 999999988776 8888888888889999899999999999999988876655
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.22 E-value=1.9e-07 Score=86.27 Aligned_cols=103 Identities=22% Similarity=0.126 Sum_probs=83.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHh
Q 048090 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAK 415 (447)
Q Consensus 336 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (447)
|......+.+.+..++|...+.+..... |-....|+..+..+...|.+++|.+.|..++..+|+.+.+...++.++.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~--~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID--PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc--hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 3445556677788888888888777655 76777788888999999999999999999999999999999999999999
Q ss_pred cCChHHHHH--HHHHHHHcCCCCCCcccc
Q 048090 416 FCMWDEIGQ--LRELMKEKGLKKDVGCSW 442 (447)
Q Consensus 416 ~g~~~~A~~--~~~~m~~~~~~p~~~~~~ 442 (447)
.|+..-|.. ++.++.+ +.|+-.-.|
T Consensus 731 ~G~~~la~~~~~L~dalr--~dp~n~eaW 757 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALR--LDPLNHEAW 757 (799)
T ss_pred hCCcchHHHHHHHHHHHh--hCCCCHHHH
Confidence 998877777 7887776 555544444
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.18 E-value=3.4e-09 Score=91.04 Aligned_cols=250 Identities=11% Similarity=0.081 Sum_probs=145.2
Q ss_pred HHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCC
Q 048090 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL 239 (447)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 239 (447)
+-+.-.|++..++.-.+ .....-..+......+.+++...|+++.+. .++.. +..|.......+...+...++
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~---~~~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKK---SSSPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-T---TSSCCCHHHHHHHHHHCTSTT
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhcc---CCChhHHHHHHHHHHHhCccc
Confidence 33455677777775555 222211223334445667777777765443 22222 235555555555554444345
Q ss_pred hHHHHHHHHhhhhhcccCCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 048090 240 VTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318 (447)
Q Consensus 240 ~~~A~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 318 (447)
-+.+..-++ +....... .+..........+...|++++|++++..- .+.......+..+.+.++++.|.+
T Consensus 82 ~e~~l~~l~---~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k 152 (290)
T PF04733_consen 82 KESALEELK---ELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEK 152 (290)
T ss_dssp HHCHHHHHH---HCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHH
T ss_pred hHHHHHHHH---HHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHH
Confidence 555555444 22222222 22222333334566678888888777542 345566667777888888888888
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHH----HcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHH
Q 048090 319 YFEWMVHDYKLEPGPEHYSCLVDLLC----RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQK 394 (447)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 394 (447)
.++.|.+ +..|. +...+..++. -.+.+.+|..+|+++.... ++++.+.+.++.++...|++++|..++++
T Consensus 153 ~l~~~~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 153 ELKNMQQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp HHHHHHC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8888863 34442 2333444333 2335788888888876653 45667778888888888888888888888
Q ss_pred HhhhCCCchhHHHHHHHHHHhcCCh-HHHHHHHHHHHH
Q 048090 395 ALELDPHNVGIYVMLSNLYAKFCMW-DEIGQLRELMKE 431 (447)
Q Consensus 395 ~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 431 (447)
+++.+|.++.+...++.+....|+. +.+.+.+.++..
T Consensus 227 al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 227 ALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 8888888888888888777777777 556677777665
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.18 E-value=2.3e-07 Score=84.10 Aligned_cols=301 Identities=11% Similarity=-0.096 Sum_probs=181.8
Q ss_pred hHHHHHHHHHccCChhhHHHHhccCC---CC--ch-hhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHH
Q 048090 123 VGSALIDLYAKLLLIHDAELMFDEIP---VK--NS-VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196 (447)
Q Consensus 123 ~~~~l~~~~~~~g~~~~a~~~~~~~~---~~--~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 196 (447)
.|..+...+...|+.+.+.+.+.... .+ +. .........+...|++++|.+.+++..+.. +.+...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence 34444455555555555444443322 11 11 112222344567889999999999887763 333333332 212
Q ss_pred Hh----cCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHH
Q 048090 197 CA----GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272 (447)
Q Consensus 197 ~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 272 (447)
+. ..+..+.+.+.+.. ..+..+........+...+...|++++|...+++.... .+.+...+..+...+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~----~p~~~~~~~~la~i~ 158 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL---WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL----NPDDAWAVHAVAHVL 158 (355)
T ss_pred HHHhcccccCchhHHHHHhc---cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCcHHHHHHHHHH
Confidence 22 23444455554443 11122233445556777899999999999999987775 555677888899999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC-CCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhH-H--HHHHHHHHc
Q 048090 273 GRNGYFKEVIKLYEAMLMNGTK-PDE--VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY-S--CLVDLLCRA 346 (447)
Q Consensus 273 ~~~g~~~~a~~~~~~m~~~~~~-p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~ 346 (447)
...|++++|...+++....... |+. ..|..+...+...|++++|..++++........+..... + .++.-+...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 9999999999999998875321 232 345577888999999999999999986431111222111 1 223334444
Q ss_pred CCHHHHHHH---HHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCC---------chhHHHHHHHHHH
Q 048090 347 GELDKAWKL---INEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH---------NVGIYVMLSNLYA 414 (447)
Q Consensus 347 g~~~~A~~~---~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~ 414 (447)
|....+.++ ..........+...........++...|+.+.|...++.+...... ..........++.
T Consensus 239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 543333333 2221111100111122236777888999999999999887663311 3445556666778
Q ss_pred hcCChHHHHHHHHHHHHc
Q 048090 415 KFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 415 ~~g~~~~A~~~~~~m~~~ 432 (447)
..|++++|.+.+.+....
T Consensus 319 ~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 319 AEGNYATALELLGPVRDD 336 (355)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999888754
No 89
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.18 E-value=1.9e-07 Score=84.62 Aligned_cols=375 Identities=14% Similarity=0.058 Sum_probs=198.4
Q ss_pred CccHHHHHHHHHhCCChhhHHHHHHHHHhc-CCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHH
Q 048090 51 PLPFNVVISDFCRNGSPLYALKTFSFMHVH-GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129 (447)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 129 (447)
+..|-.-+..+.++|++......|++.+.. .+......|...+....+.+-.+.+.++|+..++. ++..-+-.+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 344555555666667777777777666543 23334455666677666777777777777777653 3333566677
Q ss_pred HHHccCChhhHHHHhccCCCC----------chhhHHHHHHHHHhcCCH---HHHHHHHHhhhhcCCCCcH--hhHHHHH
Q 048090 130 LYAKLLLIHDAELMFDEIPVK----------NSVCANALLSGYCEAKLW---AGGLELVRLMPALGLDYDH--FTLSALL 194 (447)
Q Consensus 130 ~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~--~~~~~l~ 194 (447)
.+++.+++++|-+.+..+... +-..|+.+-....+.-+. -...++++.+... -+|. ..|.+|.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 777778888777777666532 233455444444433221 2223333333332 3443 3567777
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCCh----------------------HHHHHHHHhhhh
Q 048090 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV----------------------TKALQVFNLAGH 252 (447)
Q Consensus 195 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------------------~~A~~~~~~~~~ 252 (447)
+-|.+.|.+++|..+|++.++. ..+..-|..+-++|+.-... +-...-|+.+..
T Consensus 256 dYYIr~g~~ekarDvyeeai~~----v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT----VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh----heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 8888888888888888887775 13444455555555532111 111111111100
Q ss_pred hc--------ccCCCcch--------------------------------------hhHHHHHHHHHhcCCHHHHHHHHH
Q 048090 253 RL--------EGEINKDV--------------------------------------VLWTSMLGVYGRNGYFKEVIKLYE 286 (447)
Q Consensus 253 ~~--------~~~~~~~~--------------------------------------~~~~~l~~~~~~~g~~~~a~~~~~ 286 (447)
.. -...+.++ ..|..+...|-..|+.+.|..+|+
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 00 00000011 113333444445555555555555
Q ss_pred HHHhCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-----------------ChhhHHHHHHHHHHc
Q 048090 287 AMLMNGTKPD---EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-----------------GPEHYSCLVDLLCRA 346 (447)
Q Consensus 287 ~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~ 346 (447)
+..+...+-- ..+|..-...-.+..+++.|..+++....- .-.| +...|..+++.....
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 5544321110 122333333333445555555555544321 0010 112344445555556
Q ss_pred CCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhC--CCchhHHHHHHHHHHh---cCChHH
Q 048090 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD--PHNVGIYVMLSNLYAK---FCMWDE 421 (447)
Q Consensus 347 g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~---~g~~~~ 421 (447)
|-++....+++++++..+..| .+....+..+-.+.-++++.++|++.+.+. |.-..+|+..+.-+.+ ..+.+.
T Consensus 491 gtfestk~vYdriidLriaTP--qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIATP--QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred ccHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 666666666666666654432 223444555556666777777777777766 3345567766665543 347888
Q ss_pred HHHHHHHHHHcCCCCCCc
Q 048090 422 IGQLRELMKEKGLKKDVG 439 (447)
Q Consensus 422 A~~~~~~m~~~~~~p~~~ 439 (447)
|..+|++..+ |..|...
T Consensus 569 aRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 569 ARDLFEQALD-GCPPEHA 585 (835)
T ss_pred HHHHHHHHHh-cCCHHHH
Confidence 9999998888 6666543
No 90
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.17 E-value=4.8e-07 Score=82.11 Aligned_cols=399 Identities=11% Similarity=0.042 Sum_probs=232.2
Q ss_pred HHhhhhhhhhhcccccCCcchHHHhhccCCCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhc
Q 048090 18 IFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTAST 97 (447)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 97 (447)
..+...+..|-.-.-...+..+..++...+ ..+.+.....-.+...|+-++|.+....-.+.++. +...|..+.-.+.
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~-eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFP-EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCC-ccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHh
Confidence 344445555543221112444555555332 23334443344455567888888877766665433 5566766666667
Q ss_pred cCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCC---CCchhhHHHHHHHHHhcCCHHHHHHH
Q 048090 98 SVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP---VKNSVCANALLSGYCEAKLWAGGLEL 174 (447)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~ 174 (447)
...++++|...|+.+...+ +.|...+.-+.-.-++.|+++.....-.++. ......|..++.++.-.|+...|..+
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888764 5556677766666667777776665554443 33556777788888888888888888
Q ss_pred HHhhhhcCC-CCcHhhHHHHHH------HHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 048090 175 VRLMPALGL-DYDHFTLSALLR------ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF 247 (447)
Q Consensus 175 ~~~~~~~~~-~~~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 247 (447)
+++..+... .|+...|..... ...+.|..+.|.+.+...... +......-..-...+.+.+++++|..++
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ---IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 888776542 355555443322 234567777777666655443 2222333344566777888888888888
Q ss_pred HhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHHHH
Q 048090 248 NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI-KLYEAMLMNGTKPDEVAF-VTVISACSHTGQVKLGIEYFEWMVH 325 (447)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~ 325 (447)
..+..+ .|.+...|..+..++.+-.+.-++. .+|....+. .|....- ..=+.......-.+....++....+
T Consensus 243 ~~Ll~r----nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 243 RRLLER----NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred HHHHhh----CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhh
Confidence 877664 3333444444455554333333333 555555443 1111111 1111111122223334445555555
Q ss_pred hcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH----HHhCC---------CCCCchHh--HHHHHHHHHhcCCccHHHH
Q 048090 326 DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE----MLDRG---------HGSSSVSM--WGALLSACHDCGKFELGKL 390 (447)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~~---------~~p~~~~~--~~~l~~~~~~~g~~~~a~~ 390 (447)
. |+++- +..+...|-.....+-..++.-. +...| ..|+.... +..++..+-..|+++.|..
T Consensus 317 K-g~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~ 392 (700)
T KOG1156|consen 317 K-GVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE 392 (700)
T ss_pred c-CCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 4 65543 23333333222221111111111 11111 12444433 4567788889999999999
Q ss_pred HHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 391 AAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
.++.++...|.-+..|..-++.+...|.+++|..++++..+.
T Consensus 393 yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 393 YIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred HHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 999999999998999999999999999999999999988764
No 91
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.15 E-value=3.9e-06 Score=74.87 Aligned_cols=129 Identities=11% Similarity=0.066 Sum_probs=68.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHH
Q 048090 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377 (447)
Q Consensus 299 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~ 377 (447)
+|..++....+..-++.|..+|.++.++ +..+ .+..+++++.-|| .++.+-|.++|+--++.- ++++..-...+.
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf--~d~p~yv~~Yld 443 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF--GDSPEYVLKYLD 443 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 4555555555555566666666666554 3333 4445555555333 345555666665544443 344443445555
Q ss_pred HHHhcCCccHHHHHHHHHhhhC-C-C-chhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 378 ACHDCGKFELGKLAAQKALELD-P-H-NVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 378 ~~~~~g~~~~a~~~~~~~~~~~-~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
.+...++-..+..+|++++... + + ...+|..++..-..-|+...+.++-+++..
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5555566566666666665542 1 1 345566666555566666666665555543
No 92
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.13 E-value=2e-08 Score=98.10 Aligned_cols=208 Identities=14% Similarity=0.155 Sum_probs=116.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhhhhhccc-CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048090 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG-EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301 (447)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 301 (447)
+...|-..|......++.++|.++++++.....- ....-...|.++++.-...|.-+...++|+++.+. .-.-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 4445555566666666666666666544332100 00011234555555555555555666666666553 11233455
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--chHhHHHHHHHH
Q 048090 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS--SVSMWGALLSAC 379 (447)
Q Consensus 302 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~~l~~~~ 379 (447)
.|...|.+.+.+++|.++|+.|.++++ -....|...++.+.+..+-+.|..++.++++.- |. ......-.+..-
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l--Pk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSL--PKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc--chhhhHHHHHHHHHHH
Confidence 556666666666666666666666543 344556666666666666666666666665543 32 333444455555
Q ss_pred HhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 048090 380 HDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436 (447)
Q Consensus 380 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 436 (447)
.+.|+.++++.+|+..+...|.....|+.+++.-.+.|+.+.++.+|++....++.|
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 566666666666666666666666666666666666666666666666666655544
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.13 E-value=4.2e-07 Score=93.18 Aligned_cols=337 Identities=9% Similarity=-0.058 Sum_probs=210.8
Q ss_pred ccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCC----CC----c----hhhHHHHHHHHHh
Q 048090 97 TSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP----VK----N----SVCANALLSGYCE 164 (447)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~----~----~~~~~~l~~~~~~ 164 (447)
...|+++.+..++..+.......++.........+...|+++++...+.... .. + ......+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 3456666666655544211111223333444555667889999888776542 11 1 1112223345668
Q ss_pred cCCHHHHHHHHHhhhhcCCCCcH----hhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCC---ChhHHHHHHHHHHhc
Q 048090 165 AKLWAGGLELVRLMPALGLDYDH----FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN---DVFMQSSLIEMYGKC 237 (447)
Q Consensus 165 ~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 237 (447)
.|++++|...+++..+.-...+. .....+...+...|+++.|...+++.........+ .......+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 89999999999887653111121 23444555677899999999999988764221111 123455667788899
Q ss_pred CChHHHHHHHHhhhhhcccCCCc----chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHhc
Q 048090 238 GLVTKALQVFNLAGHRLEGEINK----DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG--TKP--DEVAFVTVISACSH 309 (447)
Q Consensus 238 g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~p--~~~~~~~ll~~~~~ 309 (447)
|+++.|...+++..........+ ....+..+...+...|++++|...+.+..... ..+ ....+..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 99999999988665543221111 22334455666777899999999988875531 112 23344455667778
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCChhhH-----HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc--hHhHHHHHHHHHhc
Q 048090 310 TGQVKLGIEYFEWMVHDYKLEPGPEHY-----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSS--VSMWGALLSACHDC 382 (447)
Q Consensus 310 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~~l~~~~~~~ 382 (447)
.|+++.|...++..............+ ...+..+...|+.+.|..++............ ...+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 999999999998875421111111111 11224455689999999998776543211110 11145678888999
Q ss_pred CCccHHHHHHHHHhhhC------CCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 048090 383 GKFELGKLAAQKALELD------PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433 (447)
Q Consensus 383 g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 433 (447)
|++++|...++++.... +....++..++.++.+.|+.++|...+.+..+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999988752 1234567888889999999999999999887643
No 94
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.12 E-value=2e-08 Score=81.47 Aligned_cols=119 Identities=13% Similarity=0.145 Sum_probs=84.9
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHH-HhcCC--cc
Q 048090 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC-HDCGK--FE 386 (447)
Q Consensus 310 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~--~~ 386 (447)
.++.+++...++...+. -+.+...|..+...|...|++++|...+++..+.. |++..++..+..++ ...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcH
Confidence 55566666666666553 24457777777777777777777777777777766 77777777777764 55565 47
Q ss_pred HHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 387 LGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 387 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
+|..+++++++.+|.++.++..++..+.+.|++++|+..|+++.+.
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777777777777777777777777777777777777777777663
No 95
>PLN02789 farnesyltranstransferase
Probab=99.11 E-value=1.5e-07 Score=82.11 Aligned_cols=230 Identities=12% Similarity=0.014 Sum_probs=141.7
Q ss_pred CCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCH
Q 048090 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG-LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278 (447)
Q Consensus 200 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 278 (447)
.+..+.|..+..++++.. +-+..+|+....++...| ++++++..++++... .+.+..+|+.....+.+.|+.
T Consensus 50 ~e~serAL~lt~~aI~ln---P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~----npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 50 DERSPRALDLTADVIRLN---PGNYTVWHFRRLCLEALDADLEEELDFAEDVAED----NPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred CCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH----CCcchHHhHHHHHHHHHcCch
Confidence 345555555555555542 223344444444444444 456666666655443 344445555544444444442
Q ss_pred --HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc---CC----H
Q 048090 279 --KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA---GE----L 349 (447)
Q Consensus 279 --~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~ 349 (447)
+++..+++++.+...+ +..+|+...-++...|+++++++.++++++. + .-+...|+.....+.+. |. .
T Consensus 123 ~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 123 AANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccH
Confidence 4566666666664322 5566666666666667777777777777654 1 22345555544444333 22 3
Q ss_pred HHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhc----CCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcC--------
Q 048090 350 DKAWKLINEMLDRGHGSSSVSMWGALLSACHDC----GKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFC-------- 417 (447)
Q Consensus 350 ~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------- 417 (447)
++++++..+++... |++..+|+.+...+... ++..+|...+.++.+.+|.++.+...|+..|+...
T Consensus 200 e~el~y~~~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~ 277 (320)
T PLN02789 200 DSELKYTIDAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRD 277 (320)
T ss_pred HHHHHHHHHHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhh
Confidence 46777777777776 88888899888888773 34566888888888888889999999999988642
Q ss_pred ----------ChHHHHHHHHHHHHcCCCCCCccccc
Q 048090 418 ----------MWDEIGQLRELMKEKGLKKDVGCSWI 443 (447)
Q Consensus 418 ----------~~~~A~~~~~~m~~~~~~p~~~~~~~ 443 (447)
..++|.++++.+. ...|=...||-
T Consensus 278 ~~~~~~~~~~~~~~a~~~~~~l~--~~d~ir~~yw~ 311 (320)
T PLN02789 278 TVDTLAEELSDSTLAQAVCSELE--VADPMRRNYWA 311 (320)
T ss_pred hhhccccccccHHHHHHHHHHHH--hhCcHHHHHHH
Confidence 3367888888883 56665555553
No 96
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.09 E-value=2.8e-09 Score=81.85 Aligned_cols=122 Identities=16% Similarity=0.114 Sum_probs=74.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048090 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLD 361 (447)
Q Consensus 283 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 361 (447)
.++++..+ ..|+. +..+..++...|++++|...|+.+... .| +...|..+..++...|++++|...|++...
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMA---QPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 44555544 23432 334455556666666666666666532 33 456666666666666666666666666666
Q ss_pred CCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHH
Q 048090 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413 (447)
Q Consensus 362 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 413 (447)
.+ |.+..++..++.++...|++++|...++++++..|.++..+.....+.
T Consensus 87 l~--p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 87 LD--ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred cC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 55 666666666666666666666666666666666666666665555443
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.07 E-value=4.7e-08 Score=82.82 Aligned_cols=186 Identities=12% Similarity=0.029 Sum_probs=116.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcch---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 048090 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV---VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297 (447)
Q Consensus 221 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 297 (447)
+.....+..++..+...|++++|...|+++... .+.+. .++..+..++.+.|++++|...++++.+.......
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 344556666677777777777777777765443 22221 34566667777777777777777777664321111
Q ss_pred --HHHHHHHHHHhcc--------CcHHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 048090 298 --VAFVTVISACSHT--------GQVKLGIEYFEWMVHDYKLEPGP-EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGS 366 (447)
Q Consensus 298 --~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 366 (447)
.++..+..++... |+++.|.+.|+.+... .|+. ..+..+... +.... ..
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~-------~~------ 165 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRN-------RL------ 165 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHH-------HH------
Confidence 1333344444433 5666677777776644 3332 222221111 00000 00
Q ss_pred CchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCC---chhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 367 SSVSMWGALLSACHDCGKFELGKLAAQKALELDPH---NVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 367 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
......+...+.+.|++++|...++++++..|+ .+..+..++.++...|++++|..+++.+...
T Consensus 166 --~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 --AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred --HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 011235677889999999999999999998765 4578999999999999999999999988764
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=6e-07 Score=73.86 Aligned_cols=395 Identities=9% Similarity=-0.025 Sum_probs=239.0
Q ss_pred hhhhhhhcccccCCcchHHHhhccCCC---CCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHH-HHHhc
Q 048090 22 RLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSS-LTAST 97 (447)
Q Consensus 22 ~l~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~ 97 (447)
+.+.-+.+.. ++++|++++....+ ++....+.|..+|-+..++..|-+.++++-.. .|...-|... ...+-
T Consensus 15 aviy~lI~d~---ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 15 AVVYRLIRDA---RYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred HHHHHHHHHh---hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 3344445555 48888888776544 35566788889999999999999999999774 4555444322 23456
Q ss_pred cCCchhHHHHHHHHHHHcCCCCchhhHHHHH--HHHHccCChhhHHHHhccCC-CCchhhHHHHHHHHHhcCCHHHHHHH
Q 048090 98 SVKDARFGKQVQAHVTKSGWLSSVFVGSALI--DLYAKLLLIHDAELMFDEIP-VKNSVCANALLSGYCEAKLWAGGLEL 174 (447)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 174 (447)
+.+.+..|+++...|... |+...-..-+ ......+++..+..++++.+ +.+..+.+...-...+.|+++.|.+-
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 678888999998887652 2222111111 22346789999999999998 46677777777777899999999999
Q ss_pred HHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCC-----------Ch---------------hHHH
Q 048090 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN-----------DV---------------FMQS 228 (447)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~---------------~~~~ 228 (447)
|+...+.+---....|+..+ +..+.++++.|.+...+++.+|....| |+ ..+|
T Consensus 167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 99987754333445666544 556789999999999999988432222 11 1233
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 048090 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308 (447)
Q Consensus 229 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 308 (447)
.-...+.+.|+++.|.+.+-.|.-+.+. ..|+.|...+.-. -..+++.+..+-+.-+...+. ....||..++-.||
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~--elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyC 321 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEE--ELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccc--cCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHh
Confidence 3334467889999999888755433222 2344444333222 123455555555555666543 45678999999999
Q ss_pred ccCcHHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHH--hcCC
Q 048090 309 HTGQVKLGIEYFEWMVHDYKL-EPGPEHYSCLVDLLC-RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH--DCGK 384 (447)
Q Consensus 309 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~ 384 (447)
+..-++.|..++.+-... .. -.+...|+ |++++. ..-..++|.+-++.+...- .... -..-+..-. ..++
T Consensus 322 KNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l--~~kL--RklAi~vQe~r~~~d 395 (459)
T KOG4340|consen 322 KNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML--TEKL--RKLAIQVQEARHNRD 395 (459)
T ss_pred hhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH--HHHH--HHHHHHHHHHHhccc
Confidence 999999888887543211 11 12333343 333433 3345667766655543321 0000 111111111 1111
Q ss_pred ---ccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC
Q 048090 385 ---FELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438 (447)
Q Consensus 385 ---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 438 (447)
...+.+-+++.+++-- .+....++.|.+..++..++++|..-.+.--+-|+
T Consensus 396 d~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~ 449 (459)
T KOG4340|consen 396 DEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDV 449 (459)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhhhcccce
Confidence 1223333444444331 23445566788899999999999877664433333
No 99
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=8e-07 Score=82.91 Aligned_cols=360 Identities=12% Similarity=0.053 Sum_probs=220.8
Q ss_pred hhhHHHhhhhhh--hhhcccccCCcchHHHhhccCCCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhc-C--------C
Q 048090 14 ICLIIFQSRLML--PYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH-G--------I 82 (447)
Q Consensus 14 ~~~~~~~~~l~~--~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~--------~ 82 (447)
+.|..|-.++++ .|.--| +.+.|.+-...+ .+...|..+.+.|.+..+.+-|.-.+-.|... | -
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG---~MD~AfksI~~I--kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIG---SMDAAFKSIQFI--KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred ccCHHHHHhhhceeEEEEec---cHHHHHHHHHHH--hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 356677777764 355555 688887777665 45567999999999999988888887777431 1 1
Q ss_pred CCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCC-chhhHHHHHHH
Q 048090 83 FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK-NSVCANALLSG 161 (447)
Q Consensus 83 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~ 161 (447)
.|+ .+-..+.......|.+++|+.+|++..+. ..|-..|...|.+++|.++-+.-..- =..||......
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~ 867 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKY 867 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHH
Confidence 122 22223333346778999999999988774 34456778889999999887654321 12456666676
Q ss_pred HHhcCCHHHHHHHHHhhhhcC-------------------CCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCC
Q 048090 162 YCEAKLWAGGLELVRLMPALG-------------------LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222 (447)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 222 (447)
+-..+|.+.|++.|++..... -..|...|......+...|+.+.|..+|.....
T Consensus 868 Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------- 940 (1416)
T KOG3617|consen 868 LEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------- 940 (1416)
T ss_pred HHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------
Confidence 777788888888887643210 022344455555555667777777777776544
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 048090 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302 (447)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 302 (447)
|.+++...|-.|+.++|-++-+ ...|....-.+...|-..|++.+|..+|.+... |..
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~---------esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsn 998 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAE---------ESGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSN 998 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHH---------hcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHH
Confidence 3456667777888888888776 244666777788888889999999888877643 222
Q ss_pred HHHHHhc---------------cCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH--------H
Q 048090 303 VISACSH---------------TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE--------M 359 (447)
Q Consensus 303 ll~~~~~---------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--------~ 359 (447)
.|+.|-. ..+.-.|..+|++. |.. ...-+..|.+.|.+.+|+++.-+ +
T Consensus 999 AIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~----g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen 999 AIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL----GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred HHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc----chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence 2222221 22233344444443 111 11223446677777776665221 2
Q ss_pred HhCCCCC-CchHhHHHHHHHHHhcCCccHHHHHHHHHhh---------------------h-------CCC---chhHHH
Q 048090 360 LDRGHGS-SSVSMWGALLSACHDCGKFELGKLAAQKALE---------------------L-------DPH---NVGIYV 407 (447)
Q Consensus 360 ~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------------------~-------~~~---~~~~~~ 407 (447)
+..+..| .|+...+.-...+....++++|..++-.+.+ + .|+ ...+..
T Consensus 1070 Ia~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLe 1149 (1416)
T KOG3617|consen 1070 IAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLE 1149 (1416)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHH
Confidence 2222222 2444455555555566666666554433222 1 122 234678
Q ss_pred HHHHHHHhcCChHHHHHHH
Q 048090 408 MLSNLYAKFCMWDEIGQLR 426 (447)
Q Consensus 408 ~l~~~~~~~g~~~~A~~~~ 426 (447)
.++..|.++|.+..|-+-|
T Consensus 1150 qvae~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1150 QVAELCLQQGAYHAATKKF 1168 (1416)
T ss_pred HHHHHHHhccchHHHHHHH
Confidence 8888999999888776544
No 100
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=5.5e-06 Score=74.68 Aligned_cols=361 Identities=11% Similarity=0.048 Sum_probs=216.1
Q ss_pred HHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCCh
Q 048090 58 ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLI 137 (447)
Q Consensus 58 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 137 (447)
++.+...|++++|.+...++...+ +-+...+..-+-++.+.+.+++|+.+.+.-.. ...+...+.--.-+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccH
Confidence 455677899999999999999865 33556677777788899999999865543221 111111112223445588999
Q ss_pred hhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCC---------------------------cHhhH
Q 048090 138 HDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY---------------------------DHFTL 190 (447)
Q Consensus 138 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~~~~~ 190 (447)
++|+..++-....+..+...-...+-+.+++++|+.+|+.+.+.+.+- ...+|
T Consensus 96 Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~sy 175 (652)
T KOG2376|consen 96 DEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSY 175 (652)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchH
Confidence 999999996666666677777888889999999999999996543210 11234
Q ss_pred HHHHH---HHhcCCcHHHHHHHHHHHHHhhh-----c-CC-CCh-----hHHHHHHHHHHhcCChHHHHHHHHhhhhhcc
Q 048090 191 SALLR---ACAGLSAAEFGRQVHAYMIRKCC-----N-LG-NDV-----FMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255 (447)
Q Consensus 191 ~~l~~---~~~~~~~~~~a~~~~~~~~~~~~-----~-~~-~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 255 (447)
..+.+ .+...|++.+|+++++...+.+. + .. .+. .+..-+..++-..|+-++|..++......
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~-- 253 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR-- 253 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--
Confidence 33332 23456788888888877733210 0 00 011 12233445566778888888887766554
Q ss_pred cCCCcchhhH----HHHHHHHHhcCCH-----------------HHHHHHH-------------------------HHHH
Q 048090 256 GEINKDVVLW----TSMLGVYGRNGYF-----------------KEVIKLY-------------------------EAML 289 (447)
Q Consensus 256 ~~~~~~~~~~----~~l~~~~~~~g~~-----------------~~a~~~~-------------------------~~m~ 289 (447)
.++|.... |.++.. ....++ +.++.-+ ++..
T Consensus 254 --~~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~ 330 (652)
T KOG2376|consen 254 --NPADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELS 330 (652)
T ss_pred --cCCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33333221 111111 000000 0000000 0000
Q ss_pred hC--CCCCCHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHH-------
Q 048090 290 MN--GTKPDEVAFVTVISACSH--TGQVKLGIEYFEWMVHDYKLEPG-PEHYSCLVDLLCRAGELDKAWKLIN------- 357 (447)
Q Consensus 290 ~~--~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~------- 357 (447)
.. +..| ...+..++..+.+ ...+..+..++....+. .+-+ ..+....+......|+++.|.+++.
T Consensus 331 a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ 407 (652)
T KOG2376|consen 331 ASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK 407 (652)
T ss_pred HhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 00 1112 2233344443322 22456667777666543 2222 4556667778889999999999999
Q ss_pred -HHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhC----CC---chhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048090 358 -EMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD----PH---NVGIYVMLSNLYAKFCMWDEIGQLRELM 429 (447)
Q Consensus 358 -~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m 429 (447)
.+.+.+..| .+...+...+.+.++-+.|..++.+++..- +. -..++..++..-.+.|+-++|...++++
T Consensus 408 ss~~~~~~~P---~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel 484 (652)
T KOG2376|consen 408 SSILEAKHLP---GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEEL 484 (652)
T ss_pred hhhhhhccCh---hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHH
Confidence 666666544 335567777788888888888888877632 22 2234455555667889999999999999
Q ss_pred HHc
Q 048090 430 KEK 432 (447)
Q Consensus 430 ~~~ 432 (447)
.+.
T Consensus 485 ~k~ 487 (652)
T KOG2376|consen 485 VKF 487 (652)
T ss_pred HHh
Confidence 873
No 101
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.05 E-value=1.3e-08 Score=78.15 Aligned_cols=117 Identities=9% Similarity=-0.095 Sum_probs=98.7
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHh
Q 048090 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL 396 (447)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 396 (447)
..++++..+ +.|+. +..+...+...|++++|...|+...... |.+..+|..++.++...|++++|...|++++
T Consensus 13 ~~~~~~al~---~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLS---VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHH---cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345666653 35654 5567778899999999999999998877 8899999999999999999999999999999
Q ss_pred hhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCcccc
Q 048090 397 ELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSW 442 (447)
Q Consensus 397 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 442 (447)
+.+|.++.++..++.++...|++++|+..+++..+ ..|+...+|
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~~ 129 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADASWS 129 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHH
Confidence 99999999999999999999999999999999886 456554443
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=3.6e-08 Score=88.12 Aligned_cols=254 Identities=12% Similarity=0.047 Sum_probs=193.6
Q ss_pred HHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCCh
Q 048090 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240 (447)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (447)
-+.+.|++.+|.-.|+...+.. +-+...|..|.......++-..|+..+++.++.+| .+..+...|.-.|...|.-
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP---~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDP---TNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC---ccHHHHHHHHHHHhhhhhH
Confidence 3568899999999999988774 44677899999899999999999999999998743 3778889999999999999
Q ss_pred HHHHHHHHhhhhhccc-C--CC--cchhhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHhccCcHH
Q 048090 241 TKALQVFNLAGHRLEG-E--IN--KDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPDEVAFVTVISACSHTGQVK 314 (447)
Q Consensus 241 ~~A~~~~~~~~~~~~~-~--~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~~~~~ 314 (447)
..|+..++......-+ . .. ++...-.. ..+.....+....++|-++. ..+..+|......|.-.|--.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999999865443100 0 00 00000000 12222233445555555554 4454467777778887888899999
Q ss_pred HHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHH
Q 048090 315 LGIEYFEWMVHDYKLEPG-PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393 (447)
Q Consensus 315 ~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 393 (447)
+|..-|+.++. ++|+ ..+||.|...++...+.++|...|+++++.. |.-+.+...|+-+|...|.+++|...|-
T Consensus 448 raiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 448 RAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 99999999985 4774 8899999999999999999999999999876 9899999999999999999999999999
Q ss_pred HHhhhCCC----------chhHHHHHHHHHHhcCChHHHHHH
Q 048090 394 KALELDPH----------NVGIYVMLSNLYAKFCMWDEIGQL 425 (447)
Q Consensus 394 ~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~ 425 (447)
.++.+.+. +..+|..|=.++.-.++.|-+.+.
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 98886533 235788888888888887755443
No 103
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.04 E-value=7.5e-08 Score=92.40 Aligned_cols=146 Identities=8% Similarity=0.023 Sum_probs=102.1
Q ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhh
Q 048090 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD-EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG-PEH 335 (447)
Q Consensus 258 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 335 (447)
.+.++..+..|.....+.|.+++|..+++...+. .|+ ......+...+.+.+++++|....++.... .|+ ...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~ 156 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSARE 156 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHH
Confidence 3445667777777777777777887777777773 454 455566667777777777777777777643 443 555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHH
Q 048090 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410 (447)
Q Consensus 336 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 410 (447)
...+..++.+.|++++|..+|+++...+ |++..++..+..++...|+.++|...|+++++...+....|+.++
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 6666777777777778877777777755 666777777777777777777777777777776655445544443
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.03 E-value=5e-07 Score=83.18 Aligned_cols=241 Identities=13% Similarity=0.050 Sum_probs=190.9
Q ss_pred CCCchhhHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHH
Q 048090 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196 (447)
Q Consensus 117 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 196 (447)
++|-...-..+...+...|-...|..+|+++ ..|..++.+|...|+..+|..+..+..+. +||+..|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 4566666677888999999999999999986 46778899999999999999998887773 7999999999998
Q ss_pred HhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcC
Q 048090 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNG 276 (447)
Q Consensus 197 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 276 (447)
.....-+++|.++.+....+ ....+.....+.+++.++.+.|+....+ .+.-..+|-.+..+..+.+
T Consensus 467 ~~d~s~yEkawElsn~~sar---------A~r~~~~~~~~~~~fs~~~~hle~sl~~----nplq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR---------AQRSLALLILSNKDFSEADKHLERSLEI----NPLQLGTWFGLGCAALQLE 533 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH---------HHHhhccccccchhHHHHHHHHHHHhhc----CccchhHHHhccHHHHHHh
Confidence 88888888998888876443 2222333344578999999999865554 5556788998999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 048090 277 YFKEVIKLYEAMLMNGTKPD-EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355 (447)
Q Consensus 277 ~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 355 (447)
+++.|.+.|..-.. ..|| ...|+.+-.+|.+.++-.+|...+.+..+- + .-+...|...+....+.|.+++|++.
T Consensus 534 k~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred hhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHH
Confidence 99999999999887 4554 578999999999999999999999999875 3 55677788888888999999999999
Q ss_pred HHHHHhCCCCCCchHhHHHHHHHHHh
Q 048090 356 INEMLDRGHGSSSVSMWGALLSACHD 381 (447)
Q Consensus 356 ~~~~~~~~~~p~~~~~~~~l~~~~~~ 381 (447)
+.++......-.+......++....+
T Consensus 610 ~~rll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 610 YHRLLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HHHHHHhhhhcccchhhHHHHHHHHh
Confidence 99987654433344445555554443
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.02 E-value=2.3e-06 Score=87.85 Aligned_cols=379 Identities=8% Similarity=-0.053 Sum_probs=230.8
Q ss_pred HhhhhhhhhhcccccCCcchHHHhhccCCCCCCcc--HHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHh
Q 048090 19 FQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLP--FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTAS 96 (447)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 96 (447)
+.......+...| ++.+|.............. ...........|++..+..+++.+.......+..........+
T Consensus 343 lh~raa~~~~~~g---~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 343 LHRAAAEAWLAQG---FPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 3344444455544 4666666555544332111 1122234455677777777776653221111222223334445
Q ss_pred ccCCchhHHHHHHHHHHHcCC------CCch--hhHHHHHHHHHccCChhhHHHHhccCCC----Cc----hhhHHHHHH
Q 048090 97 TSVKDARFGKQVQAHVTKSGW------LSSV--FVGSALIDLYAKLLLIHDAELMFDEIPV----KN----SVCANALLS 160 (447)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~------~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~----~~~~~~l~~ 160 (447)
...|+++++..++......-- .+.. .....+...+...|++++|...+++... .+ ....+.+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 677899999999887755311 1111 1222233455678999999888876432 22 134556667
Q ss_pred HHHhcCCHHHHHHHHHhhhhcCC---CC--cHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhc--CC--C-ChhHHHHH
Q 048090 161 GYCEAKLWAGGLELVRLMPALGL---DY--DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN--LG--N-DVFMQSSL 230 (447)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~-~~~~~~~l 230 (447)
.+...|++++|...+++.....- .+ ...++..+...+...|+++.|...+++....... .. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 77889999999999888764211 11 1234455666778899999999999887764211 11 1 22334556
Q ss_pred HHHHHhcCChHHHHHHHHhhhhhcccCCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHH--HH--HHH
Q 048090 231 IEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG--TKPDEV--AF--VTV 303 (447)
Q Consensus 231 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~--~~--~~l 303 (447)
...+...|++++|...+.+.........+ .....+..+...+...|+++.|...+.+..... ...... .. ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 66778889999999999876554322111 123445556677888999999999998875421 111110 10 111
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCchHhHHHHH
Q 048090 304 ISACSHTGQVKLGIEYFEWMVHDYKLEPG---PEHYSCLVDLLCRAGELDKAWKLINEMLDR----GHGSSSVSMWGALL 376 (447)
Q Consensus 304 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~~l~ 376 (447)
+..+...|+.+.|...+...... ..... ...+..+..++...|+.++|...+++.... +..+....+...+.
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la 738 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLN 738 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 23345578999999987765432 11111 111345677788999999999999987653 32233344677788
Q ss_pred HHHHhcCCccHHHHHHHHHhhhCCC
Q 048090 377 SACHDCGKFELGKLAAQKALELDPH 401 (447)
Q Consensus 377 ~~~~~~g~~~~a~~~~~~~~~~~~~ 401 (447)
.++...|+.++|...+.++++...+
T Consensus 739 ~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 739 QLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 8999999999999999999997643
No 106
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.01 E-value=1.6e-05 Score=71.03 Aligned_cols=128 Identities=15% Similarity=0.007 Sum_probs=85.3
Q ss_pred hhHHHhhhhhhhhhcccccCCcchHHHhhccCCC---CCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHH
Q 048090 15 CLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91 (447)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 91 (447)
.|+..|+.|+.-+.... .+++...++++.. ..+..|..-|+.-.+.++++....+|.+.+..- .+...|..
T Consensus 18 ~di~sw~~lire~qt~~----~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~l 91 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQP----IDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKL 91 (656)
T ss_pred ccHHHHHHHHHHHccCC----HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHH
Confidence 56899999999988764 8999999998753 466789999999999999999999999998763 35666666
Q ss_pred HHHHhcc-CCchhHHH----HHHHHH-HHcCCCCc-hhhHHHHHHH---------HHccCChhhHHHHhccCC
Q 048090 92 SLTASTS-VKDARFGK----QVQAHV-TKSGWLSS-VFVGSALIDL---------YAKLLLIHDAELMFDEIP 148 (447)
Q Consensus 92 ll~~~~~-~~~~~~a~----~~~~~~-~~~~~~~~-~~~~~~l~~~---------~~~~g~~~~a~~~~~~~~ 148 (447)
-|..-.+ .++...+. +.|+-. .+.|..+- -..|+..+.. |....+++...+++.++.
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral 164 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL 164 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh
Confidence 6654333 23333322 223322 23344333 2345444432 334456677788888775
No 107
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.98 E-value=4.2e-07 Score=86.44 Aligned_cols=400 Identities=11% Similarity=-0.032 Sum_probs=225.5
Q ss_pred cchhHHHhhhhhhhhHHHhhhhhhhhhcccccCCcchHHHhhccC---CCCCCccHHHHHHHHHhCCChhhHHHHHHHHH
Q 048090 2 VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFL---NPRNPLPFNVVISDFCRNGSPLYALKTFSFMH 78 (447)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 78 (447)
+|+.+....++.+. ..+|+.|-..|+... +...|.+.|+.. .+.+..++....+.|++..+++.|..+.-..-
T Consensus 478 l~ali~alrld~~~-apaf~~LG~iYrd~~---Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 478 LHALIRALRLDVSL-APAFAFLGQIYRDSD---DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHhcccch-hHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 45666667777665 778888888887665 578888888764 34567788889999999999999988833322
Q ss_pred hcC-CCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCCchhh-H-
Q 048090 79 VHG-IFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC-A- 155 (447)
Q Consensus 79 ~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~- 155 (447)
+.. ...-...|...--.+.+.++...|..-|+...+.. |.|...|..+..+|.++|++..|.++|.+...-++.. |
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 211 11111223333334677788888888888888764 5677889999999999999999999997766333222 1
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHhhhhc------CCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhh-----cCCCC
Q 048090 156 -NALLSGYCEAKLWAGGLELVRLMPAL------GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC-----NLGND 223 (447)
Q Consensus 156 -~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~ 223 (447)
-......+..|.+.+|...+...... +...-..++..+...+.-.|-..++..+++..++.-. ....+
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~ 712 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSD 712 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 12223345678888888888776542 1111222333333333333333344444443332200 11122
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCH---H---HHHHHHHHHHhCCCCCCH
Q 048090 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF---K---EVIKLYEAMLMNGTKPDE 297 (447)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~---~a~~~~~~m~~~~~~p~~ 297 (447)
...|-.+.+ |..+|-... . ..|+.....++..-+-..+.. + -+.+.+-.-.+ ...+.
T Consensus 713 ~~~Wi~asd----------ac~~f~q~e----~-~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~ 775 (1238)
T KOG1127|consen 713 RLQWIVASD----------ACYIFSQEE----P-SIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHM 775 (1238)
T ss_pred HHHHHHHhH----------HHHHHHHhc----c-cchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hhhcc
Confidence 222222222 222232111 0 122222222222211112111 1 01111111111 11122
Q ss_pred HHHHHHHHHHhc-------c-CcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCch
Q 048090 298 VAFVTVISACSH-------T-GQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369 (447)
Q Consensus 298 ~~~~~ll~~~~~-------~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 369 (447)
.+|..+...|.+ . .+...|+.-+.+.++- ..-+..+|+.|.-. ...|++.-|...|-+..... |...
T Consensus 776 ~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se--p~~~ 850 (1238)
T KOG1127|consen 776 YPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE--PTCH 850 (1238)
T ss_pred chHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc--ccch
Confidence 333333332221 1 1233566666665542 23345666666544 55577777777776666655 7777
Q ss_pred HhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHH
Q 048090 370 SMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLREL 428 (447)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 428 (447)
.+|..+...+.+..+++-|...|.++..+.|.|...|.-........|+.-++..+|..
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 77888888888888888888888888888888888877777666777776666666554
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.98 E-value=4.4e-08 Score=89.91 Aligned_cols=196 Identities=13% Similarity=0.115 Sum_probs=123.6
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 048090 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA 299 (447)
Q Consensus 220 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 299 (447)
.+|-...-..+...+...|-...|..+|+++ ..|.-.+-+|+..|+..+|..+..+..+ -+||+..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl------------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~l 459 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL------------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRL 459 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH------------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchh
Confidence 4455555677788889999999999999854 3477788999999999999999888877 3778888
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhc-------------------------CCCC-ChhhHHHHHHHHHHcCCHHHHH
Q 048090 300 FVTVISACSHTGQVKLGIEYFEWMVHDY-------------------------KLEP-GPEHYSCLVDLLCRAGELDKAW 353 (447)
Q Consensus 300 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------------------------~~~~-~~~~~~~l~~~~~~~g~~~~A~ 353 (447)
|..+.+......-+++|.++.+....+- .+.| ...+|-.+..+..+.+++..|.
T Consensus 460 yc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 460 YCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred HHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 8888777666555666666665543210 0111 2334444444444555555555
Q ss_pred HHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 354 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
+.|....... |++..+|+.+..+|.+.++-.+|...++++++.+-.+..+|...+....+.|.+++|++.+.++.+
T Consensus 540 ~aF~rcvtL~--Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVTLE--PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcC--CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 5555555544 555555555555555555555555555555555544555555555555555555555555555543
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.98 E-value=2.2e-07 Score=75.19 Aligned_cols=161 Identities=11% Similarity=0.034 Sum_probs=117.1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 048090 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340 (447)
Q Consensus 261 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 340 (447)
|... ..+-..+...|+-+....+........ .-|.......+......|++..|...+++... .-++|...|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHH
Confidence 4444 555566666777777777666654421 22444555577777788888888888888764 3456688888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChH
Q 048090 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420 (447)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 420 (447)
-+|.+.|++++|..-|.+..+.. |.++...+.++..+.-.|+.+.|..++.++....+.+..+-..+..+....|+++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChH
Confidence 88888888888888888887765 6777778888888888888888888888887777777888888888888888888
Q ss_pred HHHHHHH
Q 048090 421 EIGQLRE 427 (447)
Q Consensus 421 ~A~~~~~ 427 (447)
+|..+..
T Consensus 220 ~A~~i~~ 226 (257)
T COG5010 220 EAEDIAV 226 (257)
T ss_pred HHHhhcc
Confidence 8866544
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.97 E-value=5.4e-07 Score=88.55 Aligned_cols=227 Identities=12% Similarity=0.153 Sum_probs=182.3
Q ss_pred CcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCC
Q 048090 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN-----DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259 (447)
Q Consensus 185 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 259 (447)
-+...|..-|....+.++.++|.++.++++.. +.+ -..+|.++++.-...|.-+...++|+++.+. -
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~t---IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-----c 1527 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKT---INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-----C 1527 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh---CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-----c
Confidence 34556777788888999999999999999886 322 2347888888888889889999999977653 3
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC---hhhH
Q 048090 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG---PEHY 336 (447)
Q Consensus 260 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 336 (447)
.....|..|...|.+.+.+++|.++++.|.+. ..-....|...+..+.+.++-+.|..++.++.+. -|. ....
T Consensus 1528 d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1528 DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFI 1603 (1710)
T ss_pred chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHH
Confidence 34567889999999999999999999999886 3456788999999999999999999999999864 444 4556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhC--CCch-hHHHHHHHHH
Q 048090 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD--PHNV-GIYVMLSNLY 413 (447)
Q Consensus 337 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~-~~~~~l~~~~ 413 (447)
...+..-.+.|+.+.+..+|+..+... |.....|+.++..-.++|+.+.++.+|++++.+. |... .+|..++..-
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 667777889999999999999999887 7777889999999999999999999999999987 3344 3566666555
Q ss_pred HhcCChHHHHHH
Q 048090 414 AKFCMWDEIGQL 425 (447)
Q Consensus 414 ~~~g~~~~A~~~ 425 (447)
-..|+-+.++.+
T Consensus 1682 k~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1682 KSHGDEKNVEYV 1693 (1710)
T ss_pred HhcCchhhHHHH
Confidence 556775555443
No 111
>PLN02789 farnesyltranstransferase
Probab=98.95 E-value=6.6e-07 Score=78.09 Aligned_cols=189 Identities=12% Similarity=0.080 Sum_probs=146.2
Q ss_pred HHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 048090 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNG-YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312 (447)
Q Consensus 234 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 312 (447)
+...++.++|+....++..+ .+-+..+|+.-..++...| .+++++..++++.+.+.+ +..+|+.....+.+.|+
T Consensus 47 l~~~e~serAL~lt~~aI~l----nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 47 YASDERSPRALDLTADVIRL----NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCc
Confidence 33446778888888877775 5556677887777777777 579999999999986533 45566655545555565
Q ss_pred --HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhc---CCc--
Q 048090 313 --VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC---GKF-- 385 (447)
Q Consensus 313 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~-- 385 (447)
.+++..+++++.+. -+-+..+|+....++...|+++++++.++++++.+ |.+..+|+....++.+. |..
T Consensus 122 ~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 122 DAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred hhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccc
Confidence 36788888888854 23468889988888999999999999999999988 77888899988887665 333
Q ss_pred --cHHHHHHHHHhhhCCCchhHHHHHHHHHHhc----CChHHHHHHHHHHHH
Q 048090 386 --ELGKLAAQKALELDPHNVGIYVMLSNLYAKF----CMWDEIGQLRELMKE 431 (447)
Q Consensus 386 --~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~ 431 (447)
+.......+++...|.|..+|+.+...+... ++..+|.+.+.+..+
T Consensus 198 ~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 198 MRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred cHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 4677888899999999999999999999873 455678888877665
No 112
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=5.2e-06 Score=70.16 Aligned_cols=373 Identities=10% Similarity=-0.016 Sum_probs=216.1
Q ss_pred cCCcchHHHhhccCCC---CCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHH
Q 048090 33 KKNLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109 (447)
Q Consensus 33 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 109 (447)
.|++++|...++.+.. ++...+-.|.-++.-.|.+.+|..+-....+ ++---..+++...+.++-++-..+.
T Consensus 70 LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh 144 (557)
T KOG3785|consen 70 LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFH 144 (557)
T ss_pred hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHH
Confidence 3489999999987642 4455666676666667888888887665433 3333445555666677766666665
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCC--chhhHHH-HHHHHHhcCCHHHHHHHHHhhhhcCCCCc
Q 048090 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK--NSVCANA-LLSGYCEAKLWAGGLELVRLMPALGLDYD 186 (447)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 186 (447)
..+... .+-..+|.+.....-.+.+|++++.++... +-...|. +.-+|.+..-++-+.+++.-..+. -||
T Consensus 145 ~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pd 217 (557)
T KOG3785|consen 145 SSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPD 217 (557)
T ss_pred HHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCC
Confidence 555432 223334444444445678888888887643 3333333 334566667777777777666554 233
Q ss_pred H-hhHHHHHHHHhcC--CcH---------------------------------HHHHHHHHHHHHhhhcCCCChhHHHHH
Q 048090 187 H-FTLSALLRACAGL--SAA---------------------------------EFGRQVHAYMIRKCCNLGNDVFMQSSL 230 (447)
Q Consensus 187 ~-~~~~~l~~~~~~~--~~~---------------------------------~~a~~~~~~~~~~~~~~~~~~~~~~~l 230 (447)
+ ...+.......+. |+. +.|.+++-.+.+. -+.....|
T Consensus 218 StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~------IPEARlNL 291 (557)
T KOG3785|consen 218 STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH------IPEARLNL 291 (557)
T ss_pred cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh------ChHhhhhh
Confidence 3 2322222211111 111 1122222222221 12233455
Q ss_pred HHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCCCH-HHHHH
Q 048090 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY-------FKEVIKLYEAMLMNGTKPDE-VAFVT 302 (447)
Q Consensus 231 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~m~~~~~~p~~-~~~~~ 302 (447)
+-.|.+.+++.+|..+.+.+ .|.++.-|-.-.-.++..|+ ..-|.+.|+-.-..+..-|. .--.+
T Consensus 292 ~iYyL~q~dVqeA~~L~Kdl-------~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs 364 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLCKDL-------DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS 364 (557)
T ss_pred eeeecccccHHHHHHHHhhc-------CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH
Confidence 66688999999999988743 23333333332333333332 34455555554444333222 22344
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhc
Q 048090 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382 (447)
Q Consensus 303 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 382 (447)
+..++.-..++++++.++..+..- +.-|...-..+.++++..|++.+|+++|-++....++ ++...-..|.++|.+.
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sY--F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~n 441 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESY--FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRN 441 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhc
Confidence 555666677888888888888653 2333333345788899999999999999777655432 2444345677888889
Q ss_pred CCccHHHHHHHHHhhhC-CCc-hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 048090 383 GKFELGKLAAQKALELD-PHN-VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436 (447)
Q Consensus 383 g~~~~a~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 436 (447)
+.++.|..++- +.+ |.+ .......++-|.+.+.+--|.+.|..+......|
T Consensus 442 kkP~lAW~~~l---k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 442 KKPQLAWDMML---KTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred CCchHHHHHHH---hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 99888766554 444 333 3344555667888888888888888887643333
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.92 E-value=4.4e-07 Score=76.86 Aligned_cols=188 Identities=10% Similarity=-0.030 Sum_probs=132.3
Q ss_pred CcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcc
Q 048090 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV---FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD 261 (447)
Q Consensus 185 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 261 (447)
.....+..+...+...|+++.|...++++.+. .+.+. ..+..+..++...|++++|...++.+... .+.+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~----~p~~ 103 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR---YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL----HPNH 103 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----CcCC
Confidence 34566777888899999999999999999886 33333 46688899999999999999999987664 2222
Q ss_pred hh---hHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC
Q 048090 262 VV---LWTSMLGVYGRN--------GYFKEVIKLYEAMLMNGTKPDE-VAFVTVISACSHTGQVKLGIEYFEWMVHDYKL 329 (447)
Q Consensus 262 ~~---~~~~l~~~~~~~--------g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 329 (447)
.. ++..+..++.+. |++++|.+.++.+... .|+. .....+.... .. .... .
T Consensus 104 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~----~~------~~~~-~---- 166 (235)
T TIGR03302 104 PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD----YL------RNRL-A---- 166 (235)
T ss_pred CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH----HH------HHHH-H----
Confidence 22 455556666654 7889999999999885 3443 2222221110 00 0000 0
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCC
Q 048090 330 EPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH-GSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400 (447)
Q Consensus 330 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 400 (447)
.....+...+.+.|++++|...+++..+..- .|....++..++.++...|++++|...++.+....|
T Consensus 167 ----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 167 ----GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred ----HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 0122456678899999999999999987741 133456789999999999999999998888776554
No 114
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=4.1e-06 Score=74.70 Aligned_cols=383 Identities=12% Similarity=0.006 Sum_probs=240.0
Q ss_pred HhhhhhhhhHHHhhhhhhhhhcccccCCcchHHHhhcc---CCCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCC
Q 048090 8 ETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKF---LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFL 84 (447)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 84 (447)
...+++ ++.++|+.=..+|++.| ++++|++=-.+ +.|.-+..|+....++.-.|++++|+..|.+-++.. +-
T Consensus 28 ai~l~p-~nhvlySnrsaa~a~~~---~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~ 102 (539)
T KOG0548|consen 28 AIMLSP-TNHVLYSNRSAAYASLG---SYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PS 102 (539)
T ss_pred HHccCC-CccchhcchHHHHHHHh---hHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-Cc
Confidence 344555 36788888888999888 48888765444 334456789999999999999999999999998864 23
Q ss_pred chhhHHHHHHHhccC---CchhHHHHHHHHHHHcC---CCCchhhHHHHHHHHHc----------cCChhhHHHHhccC-
Q 048090 85 DTYALCSSLTASTSV---KDARFGKQVQAHVTKSG---WLSSVFVGSALIDLYAK----------LLLIHDAELMFDEI- 147 (447)
Q Consensus 85 ~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~----------~g~~~~a~~~~~~~- 147 (447)
+...+..+..+.... ++.-.--.++..+.... .......|..++..+-+ ..++..+.-.+...
T Consensus 103 n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~ 182 (539)
T KOG0548|consen 103 NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVD 182 (539)
T ss_pred hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCc
Confidence 455666666655111 00000001111111000 00011112222222111 11111222111110
Q ss_pred ---------------CCC------------c----------hhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhH
Q 048090 148 ---------------PVK------------N----------SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTL 190 (447)
Q Consensus 148 ---------------~~~------------~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 190 (447)
..| | ..-...+.+...+..+++.|++-+....+.. -+..-+
T Consensus 183 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~ 260 (539)
T KOG0548|consen 183 ELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYL 260 (539)
T ss_pred cccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHH
Confidence 011 1 1124556777777888888988888887753 333344
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCCh----hHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHH
Q 048090 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV----FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266 (447)
Q Consensus 191 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 266 (447)
+....++...|.+......-...++.+.....+. ..+..+..+|.+.++++.|...|++.... ...|+
T Consensus 261 ~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte---~Rt~~----- 332 (539)
T KOG0548|consen 261 NNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTE---HRTPD----- 332 (539)
T ss_pred HHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh---hcCHH-----
Confidence 4555567888887777776666665532111111 11222344666778888888888853322 11222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH
Q 048090 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE-VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345 (447)
Q Consensus 267 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 345 (447)
...+....+++....+...- +.|.. .-...-...+.+.|++..|...|.++++. -+-|...|....-+|.+
T Consensus 333 ----~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~k 404 (539)
T KOG0548|consen 333 ----LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLK 404 (539)
T ss_pred ----HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHH
Confidence 22233445555555555443 33332 12223356678899999999999999876 24468999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHh
Q 048090 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAK 415 (447)
Q Consensus 346 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (447)
.|.+..|+.-.+..++.+ |+....|..-+.++....++++|.+.|+++++.+|.+..+...+.+++..
T Consensus 405 L~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 405 LGEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HhhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 999999999999999887 88999999999999999999999999999999999998888888777664
No 115
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.91 E-value=4.2e-07 Score=73.82 Aligned_cols=156 Identities=11% Similarity=0.084 Sum_probs=120.8
Q ss_pred HHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 048090 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHT 310 (447)
Q Consensus 231 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 310 (447)
+-.|...|+++.+....+.+. .|. . .+...++.+++...++...+.+ +.+...|..+...|...
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~-------~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~ 86 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA-------DPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWR 86 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh-------Ccc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHC
Confidence 345778888877655443211 110 0 1123567788888888877764 44788899999999999
Q ss_pred CcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHH-HHcCC--HHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCcc
Q 048090 311 GQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLL-CRAGE--LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386 (447)
Q Consensus 311 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 386 (447)
|+++.|...|++..+. .| +...+..+..++ ...|+ .++|.+++++.++.+ |++..++..++..+...|+++
T Consensus 87 g~~~~A~~a~~~Al~l---~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~ 161 (198)
T PRK10370 87 NDYDNALLAYRQALQL---RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD--ANEVTALMLLASDAFMQADYA 161 (198)
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHcCCHH
Confidence 9999999999999854 45 577788888764 67777 599999999999988 999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCchhHHH
Q 048090 387 LGKLAAQKALELDPHNVGIYV 407 (447)
Q Consensus 387 ~a~~~~~~~~~~~~~~~~~~~ 407 (447)
+|...|+++++..|++..-+.
T Consensus 162 ~Ai~~~~~aL~l~~~~~~r~~ 182 (198)
T PRK10370 162 QAIELWQKVLDLNSPRVNRTQ 182 (198)
T ss_pred HHHHHHHHHHhhCCCCccHHH
Confidence 999999999999988665443
No 116
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=2.3e-06 Score=68.87 Aligned_cols=200 Identities=18% Similarity=0.203 Sum_probs=149.2
Q ss_pred CcHHHHHHHHHHHHHhhh-c-CCCChh-HHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCC
Q 048090 201 SAAEFGRQVHAYMIRKCC-N-LGNDVF-MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY 277 (447)
Q Consensus 201 ~~~~~a~~~~~~~~~~~~-~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 277 (447)
.+.++..+++..+....+ + ..++.. .+..+.-+....|+.+.|..+++.+... .|.+...-..-...+-..|+
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~----fp~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR----FPGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh----CCCChhHHHHHHHHHHHhhc
Confidence 455666666666655421 2 334443 4566677778889999999999977665 44344443333444566899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 048090 278 FKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLIN 357 (447)
Q Consensus 278 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 357 (447)
+++|+++++.+.+.+ +.|..++..=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 999999999999876 335666766666666778888898888888775 57889999999999999999999999999
Q ss_pred HHHhCCCCCCchHhHHHHHHHHHhcC---CccHHHHHHHHHhhhCCCchhHHHHH
Q 048090 358 EMLDRGHGSSSVSMWGALLSACHDCG---KFELGKLAAQKALELDPHNVGIYVML 409 (447)
Q Consensus 358 ~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~l 409 (447)
+++-.. |.++..|..+...+.-.| +.+.+.+.|.+++++.|.+...+.-+
T Consensus 179 E~ll~~--P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 179 ELLLIQ--PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 998766 888888888888776665 56778999999999998766555444
No 117
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.89 E-value=5.3e-08 Score=74.51 Aligned_cols=94 Identities=20% Similarity=0.200 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHh
Q 048090 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAK 415 (447)
Q Consensus 336 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (447)
...+...+...|++++|.+.++.+...+ |.+...+..++.++...|+++.|...++++++.+|.++..+..++.+|..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 3444445555555555555555555544 55555555555555555555555555555555555555555555555555
Q ss_pred cCChHHHHHHHHHHHH
Q 048090 416 FCMWDEIGQLRELMKE 431 (447)
Q Consensus 416 ~g~~~~A~~~~~~m~~ 431 (447)
.|++++|...+++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555554
No 118
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=1e-06 Score=72.51 Aligned_cols=293 Identities=12% Similarity=0.028 Sum_probs=181.1
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHH-HHHHHH
Q 048090 54 FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSA-LIDLYA 132 (447)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 132 (447)
+.+.+..+.+..+++.|++++..-.+... .+......+..+|-...++..|-..|+++... -|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 66778888888999999999988877632 26667777778888888999999999998774 455554432 235566
Q ss_pred ccCChhhHHHHhccCCCC-chhhHHHHHHH--HHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHH
Q 048090 133 KLLLIHDAELMFDEIPVK-NSVCANALLSG--YCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209 (447)
Q Consensus 133 ~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 209 (447)
+.+.+.+|+++...|... +...-..-+.+ .-..+++..+..++++....| +..+.....-...+.|+++.|.+-
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHH
Confidence 788889999998888753 22221111222 235678888888887766432 333444444445688999999999
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCc----------ch---------------hh
Q 048090 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK----------DV---------------VL 264 (447)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----------~~---------------~~ 264 (447)
|+...+-+ |..| ...|+ +.-+..+.|+++.|++...++.++.-...|. |+ ..
T Consensus 167 FqaAlqvs-Gyqp-llAYn-iALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 167 FQAALQVS-GYQP-LLAYN-LALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred HHHHHhhc-CCCc-hhHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHH
Confidence 98888863 5444 23344 4445667788899988888665542211121 11 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHH
Q 048090 265 WTSMLGVYGRNGYFKEVIKLYEAMLMN-GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDL 342 (447)
Q Consensus 265 ~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~ 342 (447)
+|.-...+.+.|+++.|.+.+-.|.-. .-..|+.|...+.-.= ..+++-...+-++-+.. +.| -..|+..++-.
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~---~nPfP~ETFANlLll 319 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQ---QNPFPPETFANLLLL 319 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHh---cCCCChHHHHHHHHH
Confidence 222223345667777777766666322 1233556655543221 23445555555555553 333 35667777777
Q ss_pred HHHcCCHHHHHHHHHHH
Q 048090 343 LCRAGELDKAWKLINEM 359 (447)
Q Consensus 343 ~~~~g~~~~A~~~~~~~ 359 (447)
||+..-++.|-.++.+-
T Consensus 320 yCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAEN 336 (459)
T ss_pred HhhhHHHhHHHHHHhhC
Confidence 77777777777776553
No 119
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=2.3e-05 Score=75.21 Aligned_cols=317 Identities=13% Similarity=0.089 Sum_probs=176.0
Q ss_pred CCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCC--CCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHH
Q 048090 49 RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI--FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSA 126 (447)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 126 (447)
.||..-+..+.++..++-+.+-++++++..-..- .-+...-+.++-...+ -+.....++.+++-.-+ .|+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~~------ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-APD------ 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-chh------
Confidence 5777778888999999999999999998864321 1112222333333222 23333444444443221 111
Q ss_pred HHHHHHccCChhhHHHHhccCC-------------------------CCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhc
Q 048090 127 LIDLYAKLLLIHDAELMFDEIP-------------------------VKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181 (447)
Q Consensus 127 l~~~~~~~g~~~~a~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (447)
+.......+-+++|..+|++.. -..+..|..+..+-.+.|...+|++-|-+.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 1122223333344444433321 013456888888888888888888776543
Q ss_pred CCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcc
Q 048090 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD 261 (447)
Q Consensus 182 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 261 (447)
.|+..|..+++.+.+.|.|++-.+++....+. .-+|. +-..|+-+|++.++..+-++++. .|+
T Consensus 1131 ---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk--~~E~~--id~eLi~AyAkt~rl~elE~fi~----------gpN 1193 (1666)
T KOG0985|consen 1131 ---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK--VREPY--IDSELIFAYAKTNRLTELEEFIA----------GPN 1193 (1666)
T ss_pred ---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--hcCcc--chHHHHHHHHHhchHHHHHHHhc----------CCC
Confidence 35667888888888999999888888877766 33343 33678888888888888777663 556
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048090 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341 (447)
Q Consensus 262 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 341 (447)
..-...+..-|...|.++.|.-+|... ..|..|...+...|++..|..--++. .+..+|-.+-.
T Consensus 1194 ~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~Vcf 1257 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCF 1257 (1666)
T ss_pred chhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHH
Confidence 666666666666777777666555432 23445555555555555554432222 23344444444
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHh
Q 048090 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAK 415 (447)
Q Consensus 342 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (447)
+|...+.+.-| .|...++.. ...-..-++..|..+|-+++-..+++..+.+......+|.-|+..|.+
T Consensus 1258 aCvd~~EFrlA-----QiCGL~iiv-hadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1258 ACVDKEEFRLA-----QICGLNIIV-HADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHhchhhhhHH-----HhcCceEEE-ehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 44444333222 121111111 111134455555555555555555555555444444455555544443
No 120
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.86 E-value=2.7e-06 Score=78.66 Aligned_cols=169 Identities=13% Similarity=0.181 Sum_probs=91.3
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHH
Q 048090 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272 (447)
Q Consensus 193 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 272 (447)
.+.+......|.+|..+++.+... + .....|..+.+-|...|+++.|.++|-+. ..++-.|..|
T Consensus 738 aieaai~akew~kai~ildniqdq--k--~~s~yy~~iadhyan~~dfe~ae~lf~e~------------~~~~dai~my 801 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQ--K--TASGYYGEIADHYANKGDFEIAEELFTEA------------DLFKDAIDMY 801 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhh--c--cccccchHHHHHhccchhHHHHHHHHHhc------------chhHHHHHHH
Confidence 344555667777777777766655 2 23345566667777777777777777632 2245566677
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHH
Q 048090 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352 (447)
Q Consensus 273 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 352 (447)
.+.|+|++|.++-.+.. |.......|-.-..-.-+.|++.+|.+++-.+. .|+. -|.+|-+.|..+..
T Consensus 802 ~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddm 869 (1636)
T KOG3616|consen 802 GKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDM 869 (1636)
T ss_pred hccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHH
Confidence 77777777777766543 223334444444444555666666665554331 2322 24455555555555
Q ss_pred HHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHH
Q 048090 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393 (447)
Q Consensus 353 ~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 393 (447)
+++..+-.... -..+...+..-+...|+...|..-|-
T Consensus 870 irlv~k~h~d~----l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 870 IRLVEKHHGDH----LHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred HHHHHHhChhh----hhHHHHHHHHHHHhccChhHHHHHHH
Confidence 55554432221 11123444444444555554444443
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.84 E-value=3e-06 Score=81.68 Aligned_cols=131 Identities=14% Similarity=0.070 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHH
Q 048090 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG-PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374 (447)
Q Consensus 296 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 374 (447)
+...+..|.......|++++|..+++.+.+ +.|+ ......+...+.+.+++++|+..+++..... |++......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHH
Confidence 455666666666666666666666666653 3454 4444555566666666666666666666655 666666666
Q ss_pred HHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 375 LLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 375 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
+..++.+.|++++|..+|++++..+|+++.++..++.++...|+.++|...|++..+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666666665566666666666666666666666666666544
No 122
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=1.1e-05 Score=65.59 Aligned_cols=249 Identities=12% Similarity=0.034 Sum_probs=162.7
Q ss_pred ccCChhhHHHHhccCC-C-CchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHH-HHH
Q 048090 133 KLLLIHDAELMFDEIP-V-KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG-RQV 209 (447)
Q Consensus 133 ~~g~~~~a~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~ 209 (447)
-.|.+..++..-.... . .+...-.-+-++|...|++..... +..... .|....+..+.......++.+.- .++
T Consensus 20 Y~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~l 95 (299)
T KOG3081|consen 20 YLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSILASL 95 (299)
T ss_pred HhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHHHHH
Confidence 3455555554443332 2 234444445666777776654332 222222 34444444444444444444333 344
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048090 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289 (447)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 289 (447)
.+.+... ....+......-...|+..|++++|++.... ..+......=+..+.+..+.+-|.+.+++|.
T Consensus 96 ~E~~a~~--~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~---------~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 96 YELVADS--TDGSNLIDLLLAAIIYMHDGDFDEALKALHL---------GENLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHhh--ccchhHHHHHHhhHHhhcCCChHHHHHHHhc---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 3333434444556678999999999998873 2234444444566778889999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 048090 290 MNGTKPDEVAFVTVISACSH----TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHG 365 (447)
Q Consensus 290 ~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 365 (447)
+- -+..|.+.|..++.+ .+.+..|.-+|+++.. ...|+..+.+...-++...|++++|..++++.+.+.
T Consensus 165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-- 237 (299)
T KOG3081|consen 165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-- 237 (299)
T ss_pred cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--
Confidence 73 366778877777653 4568999999999975 368999999999999999999999999999999887
Q ss_pred CCchHhHHHHHHHHHhcCCccHH-HHHHHHHhhhCCCch
Q 048090 366 SSSVSMWGALLSACHDCGKFELG-KLAAQKALELDPHNV 403 (447)
Q Consensus 366 p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~~~~~ 403 (447)
++++.+...++.+-...|...++ .+.+.+.....|..+
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 77888888887777777766444 456666666666543
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.82 E-value=1.4e-06 Score=84.73 Aligned_cols=235 Identities=10% Similarity=0.098 Sum_probs=152.7
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHh-hHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHH
Q 048090 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF-TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227 (447)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 227 (447)
..+...+..|+..+...+++++|.++.+...+. .|+.. .|..+...+.+.++...+..+ .+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~-------------- 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NL-------------- 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hh--------------
Confidence 346777888999998999999999998876665 45543 333333355566665555444 22
Q ss_pred HHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048090 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307 (447)
Q Consensus 228 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 307 (447)
+.......++..+..+.+.+.. ...+...+..+..+|-+.|+.++|..+|+++.+.. +-|+.+.+.+...+
T Consensus 90 ---l~~~~~~~~~~~ve~~~~~i~~-----~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ 160 (906)
T PRK14720 90 ---IDSFSQNLKWAIVEHICDKILL-----YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSY 160 (906)
T ss_pred ---hhhcccccchhHHHHHHHHHHh-----hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHH
Confidence 2222333333333333333322 33445578889999999999999999999999976 34788899999999
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHH---H--HHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhc
Q 048090 308 SHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL---L--CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382 (447)
Q Consensus 308 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 382 (447)
+.. ++++|.+++.++...+ -+..-|+.+... + ....+++.-..+.+.+...-..-.-..++..+-..|...
T Consensus 161 ae~-dL~KA~~m~~KAV~~~---i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~ 236 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYRF---IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKAL 236 (906)
T ss_pred HHh-hHHHHHHHHHHHHHHH---HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhh
Confidence 988 9999999998887541 111111111111 1 122233444444444433311111233455666788888
Q ss_pred CCccHHHHHHHHHhhhCCCchhHHHHHHHHHH
Q 048090 383 GKFELGKLAAQKALELDPHNVGIYVMLSNLYA 414 (447)
Q Consensus 383 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 414 (447)
++++++..+++.+++.+|.|..+..-++.+|.
T Consensus 237 ~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 237 EDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 99999999999999999999999999998886
No 124
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=1.2e-05 Score=75.33 Aligned_cols=343 Identities=13% Similarity=0.129 Sum_probs=216.7
Q ss_pred CCCCCccHHHHHH--HHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHc-C-------
Q 048090 47 NPRNPLPFNVVIS--DFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKS-G------- 116 (447)
Q Consensus 47 ~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~------- 116 (447)
..=|+.|...+++ .|.--|+.+.|.+-.+..++ ...|..+.+.|.+.++++-|.-.+..|... |
T Consensus 722 e~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 722 ENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred cccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence 3446777777764 46778999999887766554 467899999999998888887766665431 1
Q ss_pred -CCCchhhHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHH
Q 048090 117 -WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR 195 (447)
Q Consensus 117 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 195 (447)
-.|+ .+-....-.....|.+++|+.+|++-+. |..|=..|...|.|++|+++-+.=-... -..||..-..
T Consensus 796 ~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~ 866 (1416)
T KOG3617|consen 796 QQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAK 866 (1416)
T ss_pred HhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHH
Confidence 1222 2222333344577999999999988754 4455667888999999999866533221 2246666666
Q ss_pred HHhcCCcHHHHHHHHHHH----------HHhhhc-------CCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCC
Q 048090 196 ACAGLSAAEFGRQVHAYM----------IRKCCN-------LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258 (447)
Q Consensus 196 ~~~~~~~~~~a~~~~~~~----------~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 258 (447)
-+...++.+.|.+.|++. +...|+ -..|...|.--...+-..|+.+.|+.+|..++
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~------- 939 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK------- 939 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-------
Confidence 667778888888888753 222110 11244445555556667888888888887433
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC-CC--CChhh
Q 048090 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK-LE--PGPEH 335 (447)
Q Consensus 259 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~ 335 (447)
-|..++...|-.|+.++|-++-++- -|......|.+.|-..|++.+|...|.+...-.+ +. .....
T Consensus 940 -----D~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~ 1008 (1416)
T KOG3617|consen 940 -----DYFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM 1008 (1416)
T ss_pred -----hhhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 3667778888889999988877652 3566677889999999999999999988753100 00 00000
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHH----------hhhCCC-c
Q 048090 336 YSCLVDLLCRA--GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKA----------LELDPH-N 402 (447)
Q Consensus 336 ~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----------~~~~~~-~ 402 (447)
-..|...+... .+.-.|-.+|++. |. -+..-...|-+.|.+.+|.++.-+- ..++|. |
T Consensus 1009 ~d~L~nlal~s~~~d~v~aArYyEe~---g~------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sD 1079 (1416)
T KOG3617|consen 1009 KDRLANLALMSGGSDLVSAARYYEEL---GG------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSD 1079 (1416)
T ss_pred HHHHHHHHhhcCchhHHHHHHHHHHc---ch------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCC
Confidence 11122222222 2233344444442 11 1333455667777777776644321 123443 7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 403 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
+.....-.+.++...++++|..++...++
T Consensus 1080 p~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1080 PKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 88888888888889999998887765543
No 125
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=6.9e-05 Score=72.09 Aligned_cols=138 Identities=19% Similarity=0.275 Sum_probs=100.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 048090 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340 (447)
Q Consensus 261 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 340 (447)
....|..+..+-.+.|...+|++-|-+. -|+..|..+++.+.+.|.+++-..++...+++ .-.|.+. ..|+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHH
Confidence 3567888888888888888888776542 36678899999999999999999999888766 4455544 5678
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChH
Q 048090 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420 (447)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 420 (447)
-+|++.+++.+.++++ .| |+... ...++.-|...|.++.|.-+|. +..-|..|+..+...|.++
T Consensus 1174 ~AyAkt~rl~elE~fi-----~g--pN~A~-i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ 1237 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFI-----AG--PNVAN-IQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQ 1237 (1666)
T ss_pred HHHHHhchHHHHHHHh-----cC--CCchh-HHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHH
Confidence 8899999988877665 23 54444 7778888888888887777776 3344566666666666666
Q ss_pred HHH
Q 048090 421 EIG 423 (447)
Q Consensus 421 ~A~ 423 (447)
.|.
T Consensus 1238 ~AV 1240 (1666)
T KOG0985|consen 1238 GAV 1240 (1666)
T ss_pred HHH
Confidence 554
No 126
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.77 E-value=3.4e-06 Score=80.50 Aligned_cols=360 Identities=13% Similarity=-0.010 Sum_probs=194.0
Q ss_pred hhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhcc
Q 048090 67 PLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146 (447)
Q Consensus 67 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 146 (447)
...|+..|-+..+..+. =...|..+...|+...+...|...|+..-+.+ +.+...+....+.|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 55555555555443222 13456777777777777777888888777654 34555667777888888888888777322
Q ss_pred CCCCc-----hhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCC
Q 048090 147 IPVKN-----SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG 221 (447)
Q Consensus 147 ~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 221 (447)
..+.+ ...|....-.|...++...|..-|+...+.. +-|...|..+..+|.+.|++..|.++|.++.... +
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr---P 627 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR---P 627 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC---c
Confidence 22211 1122223334555566666666666655542 2355566666666666666666666666655531 1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhhhhhccc---CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH-------hC
Q 048090 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG---EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-------MN 291 (447)
Q Consensus 222 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-------~~ 291 (447)
.+...-.-.....+..|.+.+|+..+..+...... +...-..++-.+...+.-.|-..++.+++++-+ .+
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 12222222233345556666666665543322110 011111222222222222222222222222211 11
Q ss_pred C--------------------CCCC---HHHHHHHHHHHhccCcH---H---HHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 048090 292 G--------------------TKPD---EVAFVTVISACSHTGQV---K---LGIEYFEWMVHDYKLEPGPEHYSCLVDL 342 (447)
Q Consensus 292 ~--------------------~~p~---~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 342 (447)
. +.|+ ......+..-.-..+.. + .+.+.+-.-. .+..+..+|..|+..
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl---sl~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL---SLAIHMYPWYNLGIN 784 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH---HHhhccchHHHHhHH
Confidence 1 1122 11111111101111111 1 1111111111 122334555555555
Q ss_pred HHH--------cCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHH
Q 048090 343 LCR--------AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYA 414 (447)
Q Consensus 343 ~~~--------~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 414 (447)
|.+ ..+...|...+...++.. .++..+|+.|+-. ...|++.-+...|-+.....|.+..+|..++-.+.
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~--ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l 861 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLC--ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVL 861 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHh--hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEE
Confidence 443 123457888888888765 6677778888777 66789999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCcc
Q 048090 415 KFCMWDEIGQLRELMKEKGLKKDVGC 440 (447)
Q Consensus 415 ~~g~~~~A~~~~~~m~~~~~~p~~~~ 440 (447)
+..+++-|...|...+. +.|+-..
T Consensus 862 ~n~d~E~A~~af~~~qS--LdP~nl~ 885 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQS--LDPLNLV 885 (1238)
T ss_pred ecccHHHhhHHHHhhhh--cCchhhH
Confidence 99999999999988765 5565433
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.75 E-value=1.6e-05 Score=77.61 Aligned_cols=237 Identities=12% Similarity=0.076 Sum_probs=156.3
Q ss_pred hhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhc
Q 048090 86 TYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165 (447)
Q Consensus 86 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (447)
...+..|+..+...+++++|.++.+...+.. |-....|-.+...+.+.++.+++..+ .++......
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 3456666666666667777776666555532 22233333333355555554444322 344444455
Q ss_pred CCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHH
Q 048090 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQ 245 (447)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 245 (447)
.++.-+.-++..|... .-+...+..+..+|-+.|+.+++..+++++++.+ +.++.+.|.+...|... ++++|.+
T Consensus 97 ~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 97 LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh-hHHHHHH
Confidence 5554444455555553 3344577788888999999999999999999883 45788889999999888 9999988
Q ss_pred HHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 048090 246 VFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD-EVAFVTVISACSHTGQVKLGIEYFEWMV 324 (447)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 324 (447)
++.++.. .|...+++..+.++|.++... .|+ ...+ .++.+.+.
T Consensus 171 m~~KAV~------------------~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f----------------~~i~~ki~ 214 (906)
T PRK14720 171 YLKKAIY------------------RFIKKKQYVGIEEIWSKLVHY--NSDDFDFF----------------LRIERKVL 214 (906)
T ss_pred HHHHHHH------------------HHHhhhcchHHHHHHHHHHhc--CcccchHH----------------HHHHHHHH
Confidence 8874422 266677889999999999875 333 2222 23333343
Q ss_pred HhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHH
Q 048090 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380 (447)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 380 (447)
...+..--+.++..+...|-..++++++..+++.+++.. |.+..+..-++.+|.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~--~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD--NKNNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC--CcchhhHHHHHHHHH
Confidence 332334445566677778888889999999999998876 777777788888776
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.75 E-value=1.7e-06 Score=70.21 Aligned_cols=137 Identities=15% Similarity=0.159 Sum_probs=117.2
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHH
Q 048090 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373 (447)
Q Consensus 294 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 373 (447)
.|+......+-..+...|+-+....+....... ...+......++....+.|++.+|...+++..... |+|..+|+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~--p~d~~~~~ 138 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA--PTDWEAWN 138 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC--CCChhhhh
Confidence 453332266667778888888888888876532 23455666779999999999999999999999887 99999999
Q ss_pred HHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 048090 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434 (447)
Q Consensus 374 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 434 (447)
.++-+|.+.|+++.|...|.+++++.|.++.+.+.++-.|.-.|+.+.|..++......+.
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999998876554
No 129
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.75 E-value=2.8e-07 Score=69.48 Aligned_cols=96 Identities=11% Similarity=-0.013 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHH
Q 048090 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413 (447)
Q Consensus 334 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 413 (447)
...-.+...+...|++++|..+|+-+...+ |.+...|..|+.++...|++++|...|..+..++|+++..+..++.++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 334455556778899999999999988877 888888999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHH
Q 048090 414 AKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 414 ~~~g~~~~A~~~~~~m~~ 431 (447)
...|+.+.|.+.|+..+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999988776
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=6.4e-06 Score=66.40 Aligned_cols=189 Identities=16% Similarity=0.106 Sum_probs=145.6
Q ss_pred CChHHHHHHHHhhhhhcccC-CCcchhh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHH
Q 048090 238 GLVTKALQVFNLAGHRLEGE-INKDVVL-WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE-VAFVTVISACSHTGQVK 314 (447)
Q Consensus 238 g~~~~A~~~~~~~~~~~~~~-~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~ 314 (447)
.+.++..+++..+......+ ..++..+ |..++-+....|+.+.|...++++.+.- |.. ..-..-.--+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 46777777777665554444 4444433 4555666778899999999999998763 433 22222222344679999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHH
Q 048090 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQK 394 (447)
Q Consensus 315 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 394 (447)
+|.++++.+.++ . +.|..++-.-+...-..|+.-+|++-+.+..+.- +.|..+|.-+...|...|++++|.-.+++
T Consensus 104 ~A~e~y~~lL~d-d-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 104 EAIEYYESLLED-D-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--MNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hHHHHHHHHhcc-C-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 999999999976 2 4457777777777778888889999999988876 88999999999999999999999999999
Q ss_pred HhhhCCCchhHHHHHHHHHHhcC---ChHHHHHHHHHHHHc
Q 048090 395 ALELDPHNVGIYVMLSNLYAKFC---MWDEIGQLRELMKEK 432 (447)
Q Consensus 395 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~ 432 (447)
++-..|-++..+..+++.+.-.| +.+-|.+.|++..+.
T Consensus 180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999887766 455677888887763
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.73 E-value=7.8e-07 Score=79.16 Aligned_cols=126 Identities=20% Similarity=0.183 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHH
Q 048090 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377 (447)
Q Consensus 298 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~ 377 (447)
.....|+..+...++++.|..+|+++.+. .|+ ....+++.+...++-.+|.+++++.+... |.+...+.....
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAE 242 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 34456677777889999999999999865 455 34557888888899999999999999876 888888888888
Q ss_pred HHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048090 378 ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMK 430 (447)
Q Consensus 378 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 430 (447)
.+.+.++++.|..+.+++.+..|.+..+|..|+.+|...|+++.|+..++.+-
T Consensus 243 fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999998888664
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=1.8e-05 Score=70.12 Aligned_cols=137 Identities=18% Similarity=0.185 Sum_probs=91.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCC
Q 048090 271 VYGRNGYFKEVIKLYEAMLMNGTKP-DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG-PEHYSCLVDLLCRAGE 348 (447)
Q Consensus 271 ~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 348 (447)
.+...|++++|+..++.+... .| |..........+.+.++.++|.+.++++... .|+ ....-.+..+|.+.|+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCC
Confidence 345567777777777777764 34 3444445555677777788888887777743 555 5555666777777888
Q ss_pred HHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHH
Q 048090 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLREL 428 (447)
Q Consensus 349 ~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 428 (447)
+.+|..++++..... |+++..|..|.++|...|+..++.....+ .|...|+++.|+..+.+
T Consensus 390 ~~eai~~L~~~~~~~--p~dp~~w~~LAqay~~~g~~~~a~~A~AE-----------------~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 390 PQEAIRILNRYLFND--PEDPNGWDLLAQAYAELGNRAEALLARAE-----------------GYALAGRLEQAIIFLMR 450 (484)
T ss_pred hHHHHHHHHHHhhcC--CCCchHHHHHHHHHHHhCchHHHHHHHHH-----------------HHHhCCCHHHHHHHHHH
Confidence 888888777777766 77777788888888777776665554443 44555566666655555
Q ss_pred HHH
Q 048090 429 MKE 431 (447)
Q Consensus 429 m~~ 431 (447)
..+
T Consensus 451 A~~ 453 (484)
T COG4783 451 ASQ 453 (484)
T ss_pred HHH
Confidence 544
No 133
>PF12854 PPR_1: PPR repeat
Probab=98.72 E-value=1.7e-08 Score=55.20 Aligned_cols=32 Identities=34% Similarity=0.409 Sum_probs=20.3
Q ss_pred CCCCchhhHHHHHHHHHccCChhhHHHHhccC
Q 048090 116 GWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147 (447)
Q Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 147 (447)
|+.||..+|+++|++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666655
No 134
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=1.4e-05 Score=64.98 Aligned_cols=251 Identities=11% Similarity=0.048 Sum_probs=160.9
Q ss_pred HHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcC
Q 048090 159 LSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238 (447)
Q Consensus 159 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 238 (447)
++-+.-.|.+..++..-...... +.+...-..+.++|...|.+.....- +.. +-.|.......+......-+
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~e---I~~---~~~~~lqAvr~~a~~~~~e~ 86 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISE---IKE---GKATPLQAVRLLAEYLELES 86 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccccc---ccc---ccCChHHHHHHHHHHhhCcc
Confidence 34455668888887766655443 13333444455666666655433322 111 22333344444444444444
Q ss_pred ChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 048090 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318 (447)
Q Consensus 239 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 318 (447)
+.++-+.-+.+ .........+......-...|+..|++++|++...... +......=+..+.+..+++.|.+
T Consensus 87 ~~~~~~~~l~E--~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~ 158 (299)
T KOG3081|consen 87 NKKSILASLYE--LVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEK 158 (299)
T ss_pred hhHHHHHHHHH--HHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433332221 11111233333334444567889999999999887621 22223333345567889999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHH
Q 048090 319 YFEWMVHDYKLEPGPEHYSCLVDLLCR----AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQK 394 (447)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 394 (447)
.+++|.+- .+..+.+-|..+|.+ .+.+..|.-+|++|-.+- |+...+.+-.+.++...|++++|..+++.
T Consensus 159 ~lk~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~--~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 159 ELKKMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT--PPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred HHHHHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc--CCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 99999742 345566666666654 467999999999998854 56777799999999999999999999999
Q ss_pred HhhhCCCchhHHHHHHHHHHhcCChHHHH-HHHHHHHH
Q 048090 395 ALELDPHNVGIYVMLSNLYAKFCMWDEIG-QLRELMKE 431 (447)
Q Consensus 395 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~ 431 (447)
++..++.++.+...++-+-...|...++. +.+.+.+.
T Consensus 233 aL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 233 ALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999999999998888888876653 45555554
No 135
>PF12854 PPR_1: PPR repeat
Probab=98.72 E-value=2.2e-08 Score=54.77 Aligned_cols=32 Identities=41% Similarity=0.770 Sum_probs=23.4
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048090 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359 (447)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 359 (447)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66777777777777777777777777777766
No 136
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.70 E-value=0.00035 Score=66.64 Aligned_cols=391 Identities=11% Similarity=0.069 Sum_probs=210.0
Q ss_pred CcchHHHhhccCCCCCCc-cHHHHHHHH--HhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHH
Q 048090 35 NLGTLTNCLKFLNPRNPL-PFNVVISDF--CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111 (447)
Q Consensus 35 ~~~~A~~~~~~~~~~~~~-~~~~l~~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 111 (447)
+...|++..+.+....|. .|..++.++ .+.|+.++|..+++.....+.. |..|...+-..|.+.++.++|..+|+.
T Consensus 24 qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~ 102 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYER 102 (932)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 466777766665443333 244455544 5678888888777777655444 667777777777888888888888888
Q ss_pred HHHcCCCCchhhHHHHHHHHHccCChhh----HHHHhccCCCCchhhHHHHHHHHHhc-CC---------HHHHHHHHHh
Q 048090 112 VTKSGWLSSVFVGSALIDLYAKLLLIHD----AELMFDEIPVKNSVCANALLSGYCEA-KL---------WAGGLELVRL 177 (447)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~l~~~~~~~-~~---------~~~a~~~~~~ 177 (447)
.... .|+......+..+|++.+++.+ |.+++...++. ...+-.+++...+. .. ..-|.+.++.
T Consensus 103 ~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~-~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~ 179 (932)
T KOG2053|consen 103 ANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR-AYYFWSVISLILQSIFSENELLDPILLALAEKMVQK 179 (932)
T ss_pred HHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-cchHHHHHHHHHHhccCCcccccchhHHHHHHHHHH
Confidence 7764 4556666667777777766543 56666655443 33333444443332 11 1224444555
Q ss_pred hhhcC-CCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhccc
Q 048090 178 MPALG-LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256 (447)
Q Consensus 178 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 256 (447)
+.+.+ -.-+..-...-...+...|.+++|.+++..-.... -...+...-+.-+..+...++|.+..++-.++...
T Consensus 180 ~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k--- 255 (932)
T KOG2053|consen 180 LLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK--- 255 (932)
T ss_pred HhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh---
Confidence 54433 11111112222233445677788877774333220 12223334455666777777887777776655443
Q ss_pred CCCcchhhHHHHHHHHHh----------------cCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCcHHHHHHH
Q 048090 257 EINKDVVLWTSMLGVYGR----------------NGYFKEVIKLYEAMLMNGT-KPDEVAFVTVISACSHTGQVKLGIEY 319 (447)
Q Consensus 257 ~~~~~~~~~~~l~~~~~~----------------~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~ 319 (447)
.+|. |...+..+.+ .+..+...+...+...... .|-...+ -+..-+..-|+.+++...
T Consensus 256 --~~Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~l-el~kr~~~~gd~ee~~~~ 330 (932)
T KOG2053|consen 256 --GNDD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARL-ELDKRYKLIGDSEEMLSY 330 (932)
T ss_pred --CCcc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHH-HHHHHhcccCChHHHHHH
Confidence 2221 3332222111 1222333333333332211 1211111 222222345777776544
Q ss_pred HHHHHHhcCCCC----C---------hhhHHHHHHHHHH------------------------cCC-----HHHHHHHHH
Q 048090 320 FEWMVHDYKLEP----G---------PEHYSCLVDLLCR------------------------AGE-----LDKAWKLIN 357 (447)
Q Consensus 320 ~~~~~~~~~~~~----~---------~~~~~~l~~~~~~------------------------~g~-----~~~A~~~~~ 357 (447)
|-+-. |-+| | ......++..+.. .|. .+.-..+++
T Consensus 331 y~~kf---g~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~ 407 (932)
T KOG2053|consen 331 YFKKF---GDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVR 407 (932)
T ss_pred HHHHh---CCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHH
Confidence 43321 2222 1 1111222222221 221 122222332
Q ss_pred HHH---hCC------CCCCchH--------hHHHHHHHHHhcCCcc---HHHHHHHHHhhhCCCchhHHHHHHHHHHhcC
Q 048090 358 EML---DRG------HGSSSVS--------MWGALLSACHDCGKFE---LGKLAAQKALELDPHNVGIYVMLSNLYAKFC 417 (447)
Q Consensus 358 ~~~---~~~------~~p~~~~--------~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 417 (447)
+.. +.| .-|.+.. +-+.|+..|.+.++.. +|+.+++..+...|.|..+--.+++.|+-.|
T Consensus 408 kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lG 487 (932)
T KOG2053|consen 408 KLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLG 487 (932)
T ss_pred HHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhc
Confidence 221 112 1122221 3456778888888754 6778888889999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCCccc
Q 048090 418 MWDEIGQLRELMKEKGLKKDVGCS 441 (447)
Q Consensus 418 ~~~~A~~~~~~m~~~~~~p~~~~~ 441 (447)
-+..|.+.|+.+.-+.+..|.--|
T Consensus 488 a~p~a~~~y~tLdIK~IQ~DTlgh 511 (932)
T KOG2053|consen 488 AFPDAYELYKTLDIKNIQTDTLGH 511 (932)
T ss_pred CChhHHHHHHhcchHHhhhccchH
Confidence 999999999998777777775433
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.69 E-value=6.2e-06 Score=72.91 Aligned_cols=129 Identities=16% Similarity=0.102 Sum_probs=112.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHH
Q 048090 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377 (447)
Q Consensus 298 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~ 377 (447)
.-|..-+ .+...|+++.|+..++.+.+. .+-|+..+....+.+.+.++.++|.+.++++.... |........+..
T Consensus 308 a~YG~A~-~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRAL-QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHH-HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHH
Confidence 3444444 345679999999999999875 34457777788899999999999999999999987 888888999999
Q ss_pred HHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 378 ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 378 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
++.+.|++.+|..+++.....+|+++..|..|.++|...|+..+|....-+...
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888777654
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.68 E-value=1.1e-06 Score=67.11 Aligned_cols=117 Identities=10% Similarity=-0.022 Sum_probs=93.8
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048090 284 LYEAMLMNGTKP-DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362 (447)
Q Consensus 284 ~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 362 (447)
.+++.... .| +......+...+...|++++|...|+.+... .+.+...+..+..++...|++++|...++.....
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555553 33 3445666777788899999999999988764 2446788888889999999999999999998887
Q ss_pred CCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHH
Q 048090 363 GHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406 (447)
Q Consensus 363 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 406 (447)
+ |++...+..+..++...|++++|...++++++..|++....
T Consensus 81 ~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 D--PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred C--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 6 87888899999999999999999999999999998776543
No 139
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.59 E-value=6.9e-05 Score=69.69 Aligned_cols=293 Identities=14% Similarity=0.069 Sum_probs=163.2
Q ss_pred HHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhh
Q 048090 60 DFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHD 139 (447)
Q Consensus 60 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 139 (447)
.+...|+++.|+.-|-+.. .....+.+....+.+.+|..+++.+.... .-..-|..+.+.|+..|+++.
T Consensus 715 hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHH
Confidence 3445566666666554332 12234555666777888888877766543 223345666677888888888
Q ss_pred HHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Q 048090 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219 (447)
Q Consensus 140 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 219 (447)
|+++|-+. ..++.-|..|.+.|+|+.|.++-.+... .......|..-..-+-+.|++.+|+++|-.+.
T Consensus 784 ae~lf~e~-----~~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----- 851 (1636)
T KOG3616|consen 784 AEELFTEA-----DLFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----- 851 (1636)
T ss_pred HHHHHHhc-----chhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----
Confidence 88887654 2355667778888888888877666542 23344455555555666777777777665431
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 048090 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA 299 (447)
Q Consensus 220 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 299 (447)
.|+ ..|.+|-+.|..+..+++..+- . ...-..|...+..-|-..|+...|+..|-+..+
T Consensus 852 -~p~-----~aiqmydk~~~~ddmirlv~k~--h----~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------- 910 (1636)
T KOG3616|consen 852 -EPD-----KAIQMYDKHGLDDDMIRLVEKH--H----GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------- 910 (1636)
T ss_pred -Cch-----HHHHHHHhhCcchHHHHHHHHh--C----hhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------
Confidence 222 3456677777777777766521 0 111233455556666666777776665544322
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHH-------------HhcCCCCChh------hHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048090 300 FVTVISACSHTGQVKLGIEYFEWMV-------------HDYKLEPGPE------HYSCLVDLLCRAGELDKAWKLINEML 360 (447)
Q Consensus 300 ~~~ll~~~~~~~~~~~a~~~~~~~~-------------~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~ 360 (447)
|.+.+..|-.++-+++|.++-+.-- +..|-..-+. ....-++..+..+-++-|.++-+-..
T Consensus 911 ~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~ 990 (1636)
T KOG3616|consen 911 FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAA 990 (1636)
T ss_pred HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhh
Confidence 3333444444555554444322110 0000000000 11122333344555666666555444
Q ss_pred hCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCC
Q 048090 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400 (447)
Q Consensus 361 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 400 (447)
+.. .......+...+...|++++|.+-|-++++++.
T Consensus 991 k~k----~~~vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 991 KDK----MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred hcc----CccchhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 433 222355667777788888888888888877653
No 140
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.55 E-value=4.5e-07 Score=74.94 Aligned_cols=110 Identities=23% Similarity=0.207 Sum_probs=92.7
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCC
Q 048090 306 ACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384 (447)
Q Consensus 306 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 384 (447)
-..+.+++++|+..|.+.++ +.| |...|..-..+|.+.|.++.|.+-.+..+..+ |....+|..|+.+|...|+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCc
Confidence 35677899999999999984 465 57777778889999999999999999998877 8888899999999999999
Q ss_pred ccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChH
Q 048090 385 FELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420 (447)
Q Consensus 385 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 420 (447)
+++|.+.|+++++++|+|......|-.+-.+.+..+
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999988888777666665555
No 141
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.53 E-value=1.9e-06 Score=61.20 Aligned_cols=94 Identities=28% Similarity=0.328 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHh
Q 048090 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAK 415 (447)
Q Consensus 336 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (447)
+..+...+...|++++|...++++.+.. |++..++..++.++...+++++|...++++.+..|.+..++..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 4556677788889999999998888765 66666788888888888999999999999888888888888888888999
Q ss_pred cCChHHHHHHHHHHHH
Q 048090 416 FCMWDEIGQLRELMKE 431 (447)
Q Consensus 416 ~g~~~~A~~~~~~m~~ 431 (447)
.|++++|...+++..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 9999999888887765
No 142
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=1.6e-06 Score=71.71 Aligned_cols=150 Identities=15% Similarity=0.158 Sum_probs=107.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHc
Q 048090 269 LGVYGRNGYFKEVIKLYEAMLMNGTKP-DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG-PEHYSCLVDLLCRA 346 (447)
Q Consensus 269 ~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 346 (447)
..-+.+.+++.+|+..|.+.++. .| |+.-|..-..+|++.|.++.|++-.+..+ .+.|. ..+|..|..+|...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHcc
Confidence 34567789999999999999985 44 56677778889999999999999888887 45675 78899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCcc---HHHHHHHHHhhhC--CCchhHHHHHHHHHHhcCChHH
Q 048090 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE---LGKLAAQKALELD--PHNVGIYVMLSNLYAKFCMWDE 421 (447)
Q Consensus 347 g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 421 (447)
|++++|.+.|++.++.. |++......|-.+--+.+... .+...++.....+ |+....++ ...-.-..
T Consensus 163 gk~~~A~~aykKaLeld--P~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~~------~~l~nnp~ 234 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELD--PDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMFN------GDLMNNPQ 234 (304)
T ss_pred CcHHHHHHHHHhhhccC--CCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhhhc------cccccCHH
Confidence 99999999999998877 888886777776666666655 3334444333333 33343333 12223344
Q ss_pred HHHHHHHHHH
Q 048090 422 IGQLRELMKE 431 (447)
Q Consensus 422 A~~~~~~m~~ 431 (447)
...+...|..
T Consensus 235 l~~~~~~m~~ 244 (304)
T KOG0553|consen 235 LMQLASQMMK 244 (304)
T ss_pred HHHHHHHHhh
Confidence 4555555555
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.51 E-value=1.1e-05 Score=62.38 Aligned_cols=125 Identities=14% Similarity=0.133 Sum_probs=71.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc---hHhHHHH
Q 048090 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSS---VSMWGAL 375 (447)
Q Consensus 300 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~~l 375 (447)
|..++..+ ..++...+...++.+.+.++-.| .......+...+...|++++|...|+...... |++ ..+...|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA--PDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHH
Confidence 33444443 35666666666666665421111 12233344456666777777777777776654 222 1234456
Q ss_pred HHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHH
Q 048090 376 LSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLREL 428 (447)
Q Consensus 376 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 428 (447)
...+...|++++|...++.. ...+-.+..+...+++|.+.|++++|...|++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66667777777777777552 22233555666777777777777777777665
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.50 E-value=4.3e-07 Score=62.64 Aligned_cols=80 Identities=25% Similarity=0.307 Sum_probs=62.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC--chHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHH
Q 048090 346 AGELDKAWKLINEMLDRGHGSS--SVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIG 423 (447)
Q Consensus 346 ~g~~~~A~~~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 423 (447)
.|+++.|+.+++++.+.. |. +...+..++.++.+.|++++|..++++ .+.+|.+......++.++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~--~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD--PTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH--CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 578888888888888776 42 444566688888888998888888888 6666777777778888888999999998
Q ss_pred HHHHH
Q 048090 424 QLREL 428 (447)
Q Consensus 424 ~~~~~ 428 (447)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88875
No 145
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.48 E-value=1.7e-06 Score=77.37 Aligned_cols=106 Identities=14% Similarity=0.195 Sum_probs=91.5
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHh
Q 048090 303 VISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381 (447)
Q Consensus 303 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 381 (447)
-...+...|+++.|+..|+++++. .| +...|..+..+|.+.|++++|+..+++++..+ |.+..+|..++.+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHH
Confidence 345567789999999999999864 44 57788888899999999999999999999887 8888899999999999
Q ss_pred cCCccHHHHHHHHHhhhCCCchhHHHHHHHHH
Q 048090 382 CGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413 (447)
Q Consensus 382 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 413 (447)
.|++++|...++++++.+|.+..+...+..+.
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999999999888777765543
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.47 E-value=5e-06 Score=61.87 Aligned_cols=103 Identities=16% Similarity=0.151 Sum_probs=49.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc---hHhHHHH
Q 048090 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSS---VSMWGAL 375 (447)
Q Consensus 300 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~~l 375 (447)
+..+...+...|++++|...|..+.....-.+ ....+..+..++.+.|++++|...++++.... |++ ..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHHHH
Confidence 34444445555555555555555544311101 12234445555555555555555555555433 221 2334555
Q ss_pred HHHHHhcCCccHHHHHHHHHhhhCCCchh
Q 048090 376 LSACHDCGKFELGKLAAQKALELDPHNVG 404 (447)
Q Consensus 376 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 404 (447)
+.++...|++++|...++++++..|++..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 55555555555555555555555555443
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.42 E-value=1.2e-05 Score=59.76 Aligned_cols=96 Identities=15% Similarity=0.076 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc---hHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCc---hhHHHH
Q 048090 335 HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSS---VSMWGALLSACHDCGKFELGKLAAQKALELDPHN---VGIYVM 408 (447)
Q Consensus 335 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~ 408 (447)
++..++..+.+.|++++|.+.+..+.... |++ ..++..++.++...|+++.|...++++....|.+ +.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 45556666777777777777777776654 433 3346667777777777777777777777766553 456777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 048090 409 LSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 409 l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
++.++.+.|++++|...++++.+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHH
Confidence 777777777777777777777764
No 148
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.39 E-value=1.9e-06 Score=56.02 Aligned_cols=60 Identities=25% Similarity=0.392 Sum_probs=30.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCc
Q 048090 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402 (447)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 402 (447)
..+.+.|++++|...|+++++.. |.+..++..++.++...|++++|...++++++..|++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 34445555555555555555544 5555555555555555555555555555555555543
No 149
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.36 E-value=7.8e-07 Score=49.56 Aligned_cols=35 Identities=31% Similarity=0.495 Sum_probs=29.8
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCch
Q 048090 52 LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT 86 (447)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 86 (447)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36888889999999999999999888888888873
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.36 E-value=1.5e-05 Score=71.39 Aligned_cols=102 Identities=9% Similarity=0.001 Sum_probs=77.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHc
Q 048090 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRA 346 (447)
Q Consensus 268 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 346 (447)
....+...|++++|+..|++.++... -+...|..+..++...|++++|+..+++++.. .| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHh
Confidence 34556677888888888888887542 25667777788888888888888888888753 44 477788888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCchHhHHHH
Q 048090 347 GELDKAWKLINEMLDRGHGSSSVSMWGAL 375 (447)
Q Consensus 347 g~~~~A~~~~~~~~~~~~~p~~~~~~~~l 375 (447)
|++++|...|++.+..+ |.+..+...+
T Consensus 84 g~~~eA~~~~~~al~l~--P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLA--PGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 88888888888888876 7777644443
No 151
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.5e-05 Score=65.26 Aligned_cols=107 Identities=15% Similarity=0.077 Sum_probs=91.2
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcC---CccHHHHHHHHHhhhCCCchhHH
Q 048090 330 EPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG---KFELGKLAAQKALELDPHNVGIY 406 (447)
Q Consensus 330 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~ 406 (447)
+-|...|..|...|...|+++.|..-|.+..+.. |+++..+..+..++.... +..++..++++++..+|.|+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 4468999999999999999999999999998876 888888888888776544 35678899999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC
Q 048090 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438 (447)
Q Consensus 407 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 438 (447)
..|+..+...|++.+|...|+.|.+..-.-++
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999999999886544333
No 152
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.35 E-value=8.5e-07 Score=48.98 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCC
Q 048090 52 LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFL 84 (447)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 84 (447)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.35 E-value=3.7e-05 Score=59.32 Aligned_cols=128 Identities=18% Similarity=0.184 Sum_probs=85.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC--hhhHHHH
Q 048090 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP--DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG--PEHYSCL 339 (447)
Q Consensus 264 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l 339 (447)
.|..++..+ ..++...+...++.+......- .......+...+...|++++|...|+.+... ...|. ......|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 344444444 4777888888888887753221 1233334556777888888888888888765 32222 2244556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHh
Q 048090 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL 396 (447)
Q Consensus 340 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 396 (447)
...+...|++++|+..++..... +.....+...+.++...|++++|...|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 77788888888888888775443 2344557788888888888888888888753
No 154
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.29 E-value=5.4e-05 Score=60.41 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=51.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHH
Q 048090 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG-PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378 (447)
Q Consensus 300 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~ 378 (447)
+..+...+...|++++|...|++..+...-.++ ...+..+..++.+.|++++|...+++.+... |.+...+..++.+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 115 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 344444444555555555555555432100111 2344455555555555555555555555543 4445445555555
Q ss_pred HHhcCC--------------ccHHHHHHHHHhhhCCCc
Q 048090 379 CHDCGK--------------FELGKLAAQKALELDPHN 402 (447)
Q Consensus 379 ~~~~g~--------------~~~a~~~~~~~~~~~~~~ 402 (447)
+...|+ +++|.++++++++.+|++
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 555444 455666666666666665
No 155
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.29 E-value=4.4e-06 Score=55.08 Aligned_cols=64 Identities=27% Similarity=0.295 Sum_probs=50.4
Q ss_pred chHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 048090 368 SVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFC-MWDEIGQLRELMKE 431 (447)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 431 (447)
++.+|..++..+...|++++|...|+++++.+|.++.+|..++.+|.+.| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34567778888888888888888888888888888888888888888888 68888888777765
No 156
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.28 E-value=3.5e-05 Score=68.83 Aligned_cols=118 Identities=14% Similarity=0.051 Sum_probs=56.5
Q ss_pred HHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHH
Q 048090 127 LIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206 (447)
Q Consensus 127 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 206 (447)
|+..+...++++.|+.+|+++.+.++.....+++.+...++-.+|.+++.+..+.. +-+...+..-...+.+.++++.|
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 33444444555555555555554444444445555555555555555555544331 22333333333344455555555
Q ss_pred HHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 048090 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248 (447)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 248 (447)
.++.+++... .+.+-.+|..|..+|...|+++.|+..++
T Consensus 254 L~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 254 LEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 5555555544 12233455555555555555555555554
No 157
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.28 E-value=4.4e-06 Score=55.09 Aligned_cols=67 Identities=21% Similarity=0.315 Sum_probs=61.2
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcC-CccHHHHHHHHHhhhCC
Q 048090 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG-KFELGKLAAQKALELDP 400 (447)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~ 400 (447)
+...|..+...+...|++++|+..|++.++.+ |++..+|..++.++...| ++++|...++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45678888899999999999999999999987 999999999999999999 79999999999999887
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.27 E-value=3.7e-05 Score=61.33 Aligned_cols=99 Identities=15% Similarity=0.073 Sum_probs=82.9
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-chHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHH
Q 048090 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS-SVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411 (447)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 411 (447)
...+..+...+...|++++|...+++.++....++ ....+..++.++...|++++|...++++++..|.+...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 45677788889999999999999999987653232 24578999999999999999999999999999999999999999
Q ss_pred HHHhcCC--------------hHHHHHHHHHHHH
Q 048090 412 LYAKFCM--------------WDEIGQLRELMKE 431 (447)
Q Consensus 412 ~~~~~g~--------------~~~A~~~~~~m~~ 431 (447)
+|...|+ +++|.+++++...
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 9988877 4667777766654
No 159
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.26 E-value=6.9e-05 Score=70.18 Aligned_cols=134 Identities=13% Similarity=0.027 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHhc-----cCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHc--------CCHHHHHHHHHHH
Q 048090 294 KPDEVAFVTVISACSH-----TGQVKLGIEYFEWMVHDYKLEPG-PEHYSCLVDLLCRA--------GELDKAWKLINEM 359 (447)
Q Consensus 294 ~p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~ 359 (447)
+.+...|..++++... .+....|..+|+++.+. .|+ ...|..+..++... ++...+.+..++.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3344555555554332 12244556666665532 444 33333333322211 1123333333333
Q ss_pred HhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 360 LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 360 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
......|.+..+|..+.......|++++|...++++++++| +...|..++.++...|+.++|.+.+++...
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33222244445555555555556666666666666666665 455666666666666666666666665554
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.25 E-value=4.7e-06 Score=54.16 Aligned_cols=58 Identities=26% Similarity=0.275 Sum_probs=54.1
Q ss_pred HHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 374 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
.++..+...|++++|...|+++++..|.++.++..++.++...|++++|...|+++.+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4677899999999999999999999999999999999999999999999999999986
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.24 E-value=2.4e-05 Score=62.19 Aligned_cols=116 Identities=9% Similarity=-0.093 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-chHhHHHHHHHHHhcCCccHHHHHH
Q 048090 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS-SVSMWGALLSACHDCGKFELGKLAA 392 (447)
Q Consensus 314 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~ 392 (447)
..+...+..+.+..+..-....|..+...+...|++++|...+++.+.....|. ...++..++.++...|++++|...+
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 334444444432212222355667777788888999999999999876642222 2346888999999999999999999
Q ss_pred HHHhhhCCCchhHHHHHHHHHH-------hcCChHHHHHHHHHH
Q 048090 393 QKALELDPHNVGIYVMLSNLYA-------KFCMWDEIGQLRELM 429 (447)
Q Consensus 393 ~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~m 429 (447)
+++++..|.....+..++..+. ..|++++|...+++.
T Consensus 96 ~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 96 FQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 9999988888888888888887 788888666655544
No 162
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.24 E-value=3.6e-06 Score=55.32 Aligned_cols=63 Identities=21% Similarity=0.332 Sum_probs=38.2
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHH
Q 048090 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVML 409 (447)
Q Consensus 345 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 409 (447)
..|++++|+++|+++.... |++..++..++.+|.+.|++++|..+++++....|+++..+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 4566666666666666555 66666666666666666666666666666666666655444433
No 163
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.23 E-value=2.7e-06 Score=47.33 Aligned_cols=33 Identities=24% Similarity=0.584 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 048090 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296 (447)
Q Consensus 264 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 296 (447)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677888888888888888888888888887776
No 164
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.22 E-value=3e-05 Score=66.99 Aligned_cols=136 Identities=14% Similarity=0.252 Sum_probs=93.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048090 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA-CSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341 (447)
Q Consensus 263 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 341 (447)
.+|..++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467778888888888888888888887543 2233344433333 23356677788888888775 3556777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCch---HhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCch
Q 048090 342 LLCRAGELDKAWKLINEMLDRGHGSSSV---SMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403 (447)
Q Consensus 342 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 403 (447)
.+.+.|+.+.|..+|++.+..- |.+. .+|...+..-.+.|+.+.+..+.+++.+..|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l--~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSL--PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTS--SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 8888888888888888887662 3333 4688888888888888888888888888777643
No 165
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.22 E-value=2.4e-05 Score=55.28 Aligned_cols=97 Identities=23% Similarity=0.279 Sum_probs=62.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHH
Q 048090 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379 (447)
Q Consensus 300 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~ 379 (447)
+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.+++..... |.+..++..++..+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHH
Confidence 334455556667777777777766543 12233555666666677777777777777776654 55555667777777
Q ss_pred HhcCCccHHHHHHHHHhhhCC
Q 048090 380 HDCGKFELGKLAAQKALELDP 400 (447)
Q Consensus 380 ~~~g~~~~a~~~~~~~~~~~~ 400 (447)
...|+++.|...++++.+..|
T Consensus 79 ~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 79 YKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHhHHHHHHHHHHHHccCC
Confidence 777777777777777766554
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.19 E-value=4.3e-06 Score=57.63 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=45.8
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHH
Q 048090 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389 (447)
Q Consensus 310 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 389 (447)
.|+++.|+.+++++.+.....++...+..+..+|.+.|++++|..++++ ...+ |.+......++.++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3566666666666665421112333444466666677777777776666 2222 334444555566666777777776
Q ss_pred HHHHH
Q 048090 390 LAAQK 394 (447)
Q Consensus 390 ~~~~~ 394 (447)
.++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66664
No 167
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.18 E-value=3.8e-06 Score=46.32 Aligned_cols=33 Identities=21% Similarity=0.463 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048090 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295 (447)
Q Consensus 263 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 295 (447)
.+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466677777777777777777777777666665
No 168
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.16 E-value=0.0011 Score=51.19 Aligned_cols=132 Identities=11% Similarity=0.069 Sum_probs=88.6
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhH
Q 048090 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372 (447)
Q Consensus 293 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 372 (447)
..|+...-..|..+..+.|+..+|...|++.... -+.-|......+.++....+++.+|...++++.+.+-.-.++...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4566666667777778888888888888877653 344567777777777778888888888888776654222233345
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 048090 373 GALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLR 426 (447)
Q Consensus 373 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 426 (447)
..+.+.+...|++..|+..|+.++..-|. +.........+.+.|+.++|..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHH
Confidence 66777788888888888888877776553 333444445566777666665433
No 169
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.13 E-value=0.0096 Score=57.35 Aligned_cols=225 Identities=10% Similarity=0.051 Sum_probs=143.5
Q ss_pred HHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHH--hccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCCh
Q 048090 60 DFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA--STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLI 137 (447)
Q Consensus 60 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 137 (447)
.....+++..|+....++.+. .|+. .|..++.+ ..+.|+.++|..+++.....+.. |..|...+-.+|...++.
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 345567888999988888775 3443 34444554 46788889998888877766533 777888888899999999
Q ss_pred hhHHHHhccCCC--CchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCC----c------HHH
Q 048090 138 HDAELMFDEIPV--KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLS----A------AEF 205 (447)
Q Consensus 138 ~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~------~~~ 205 (447)
++|..+|++... |+......+..+|++.+++.+-.++--+|.+. ++-+...|-++++...+.- . ..-
T Consensus 94 d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred hHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 999999988874 44445555666777777776655544444432 2344555555555543321 1 124
Q ss_pred HHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 048090 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285 (447)
Q Consensus 206 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 285 (447)
|.+.++.+++.+ |-..+..-.......+...|++++|++++.. ...+.-.+.+...-+.-+..+...+++.+..++-
T Consensus 173 A~~m~~~~l~~~-gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~--~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 173 AEKMVQKLLEKK-GKIESEAEIILYLLILELQGKYQEALEFLAI--TLAEKLTSANLYLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHHHHHHHhccC-CccchHHHHHHHHHHHHhcccHHHHHHHHHH--HHHHhccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence 566666666663 3222222233344556678888999888851 2212223334444456677778888888888888
Q ss_pred HHHHhCC
Q 048090 286 EAMLMNG 292 (447)
Q Consensus 286 ~~m~~~~ 292 (447)
.++...|
T Consensus 250 ~~Ll~k~ 256 (932)
T KOG2053|consen 250 SRLLEKG 256 (932)
T ss_pred HHHHHhC
Confidence 8888875
No 170
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.13 E-value=7.3e-05 Score=56.66 Aligned_cols=97 Identities=6% Similarity=-0.064 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHH
Q 048090 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376 (447)
Q Consensus 298 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~ 376 (447)
.....+..-+...|++++|..+|+.+..- .| +..-|-.|.-++-..|++++|+..|......+ |+++..+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~---Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~ag 110 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIY---DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHH
Confidence 34445556677899999999999998743 55 47777889999999999999999999999887 89999999999
Q ss_pred HHHHhcCCccHHHHHHHHHhhhC
Q 048090 377 SACHDCGKFELGKLAAQKALELD 399 (447)
Q Consensus 377 ~~~~~~g~~~~a~~~~~~~~~~~ 399 (447)
.++...|+.+.|++.|+.++...
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999998865
No 171
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.00021 Score=62.05 Aligned_cols=159 Identities=14% Similarity=0.131 Sum_probs=106.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHHHHhcCCCCChhhHHH---------
Q 048090 270 GVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVIS--ACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC--------- 338 (447)
Q Consensus 270 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--------- 338 (447)
.++.-.|++++|...--..++.. + ...+..+++ ++-..++.+.+...|++.+ .+.|+...--.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--A-TNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--c-chhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 35566788888877766666532 1 123334444 3345677888888888776 34555332211
Q ss_pred ----HHHHHHHcCCHHHHHHHHHHHHhCCCCCCchH----hHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHH
Q 048090 339 ----LVDLLCRAGELDKAWKLINEMLDRGHGSSSVS----MWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410 (447)
Q Consensus 339 ----l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 410 (447)
=..-..+.|++..|.+.|.+.+..+ |++.. .|.....+..+.|+.++|+.-.+++++++|.-...|..-+
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~id--P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra 328 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNID--PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRA 328 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCC--ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHH
Confidence 1122456788888888888887665 55443 3666666777888888888888888888887777788888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC
Q 048090 411 NLYAKFCMWDEIGQLRELMKEKGLKK 436 (447)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~~~~~p 436 (447)
+++.-.++|++|.+-+++..+..-.+
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~~~s~ 354 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQLEKDC 354 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 88888888888888888776643333
No 172
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.11 E-value=0.00031 Score=61.00 Aligned_cols=179 Identities=17% Similarity=0.211 Sum_probs=102.6
Q ss_pred HHhcCChHHHHHHHHhhhhhcccCCCcc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHH
Q 048090 234 YGKCGLVTKALQVFNLAGHRLEGEINKD--VVLWTSMLGVYGRNGYFKEVIKLYEAMLM----NGTKPD--EVAFVTVIS 305 (447)
Q Consensus 234 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~p~--~~~~~~ll~ 305 (447)
|...|++++|.+.|.+..........+. ...|.....+|.+. ++++|...+++..+ .| .|+ ...+..+..
T Consensus 45 fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~ 122 (282)
T PF14938_consen 45 FKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAE 122 (282)
T ss_dssp HHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHH
T ss_pred HHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHH
Confidence 4445555555555554433322111111 12233333444333 66666666666543 22 222 235566667
Q ss_pred HHhcc-CcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----ch-HhHHHH
Q 048090 306 ACSHT-GQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS----SV-SMWGAL 375 (447)
Q Consensus 306 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~-~~~~~l 375 (447)
.|... |+++.|.+.|++...-+....+ ..++..+...+.+.|++++|.++|++........+ +. ..+...
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 77777 8999999999887653221112 44566777888999999999999998876532211 11 124445
Q ss_pred HHHHHhcCCccHHHHHHHHHhhhCCC-----chhHHHHHHHHHH
Q 048090 376 LSACHDCGKFELGKLAAQKALELDPH-----NVGIYVMLSNLYA 414 (447)
Q Consensus 376 ~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~ 414 (447)
+-++...||+..|...+++....+|. ...+...|+.++-
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 56777889999999999999887763 3456677777664
No 173
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.09 E-value=8.7e-05 Score=66.69 Aligned_cols=126 Identities=11% Similarity=0.095 Sum_probs=98.7
Q ss_pred CCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcc
Q 048090 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD 261 (447)
Q Consensus 182 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 261 (447)
+.+.+......+++.+....+.+.+..++.+..........-..+..+++..|.+.|..+.++.+++ .....|+-||
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~---n~~~yGiF~D 137 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLK---NRLQYGIFPD 137 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHh---ChhhcccCCC
Confidence 3355677777888888888888888888888777632232334566789999999999999999887 6777788899
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 048090 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHT 310 (447)
Q Consensus 262 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 310 (447)
..+++.+|..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999988888877777777777666666554
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.07 E-value=0.00028 Score=60.98 Aligned_cols=134 Identities=13% Similarity=0.128 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048090 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV-YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTV 303 (447)
Q Consensus 225 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 303 (447)
.+|..++...-+.+..+.|..+|.++... ...+...|...... |...++.+.|.++|+...+. ...+...+...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~----~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y 76 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD----KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHH
Confidence 46788888888888899999999866431 22334445444444 23356667799999988876 45567778888
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048090 304 ISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRG 363 (447)
Q Consensus 304 l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 363 (447)
+..+...++.+.|..+|++......-.. ....|...++.-.+.|+++.+..+.+++.+.-
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8888888999999999998875421112 23578888888888899999999888888763
No 175
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.06 E-value=0.004 Score=52.52 Aligned_cols=177 Identities=10% Similarity=0.079 Sum_probs=107.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhh---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048090 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL---WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVIS 305 (447)
Q Consensus 229 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 305 (447)
.....+...|++++|.+.|+.+... .|-+... .-.++.++.+.+++++|...+++..+..+.-....+...+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~----yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNR----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 3445556678888888888766553 2222222 23456677788888888888888877533322333333333
Q ss_pred HHhc--c---------------Cc---HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 048090 306 ACSH--T---------------GQ---VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHG 365 (447)
Q Consensus 306 ~~~~--~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 365 (447)
+.+. . .+ ...|...|+.+++. -|+. .-..+|...+..+...=
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---yP~S-------------~ya~~A~~rl~~l~~~l-- 174 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---YPNS-------------QYTTDATKRLVFLKDRL-- 174 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---CcCC-------------hhHHHHHHHHHHHHHHH--
Confidence 3321 1 11 23455556666544 2332 22344444333332220
Q ss_pred CCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCC---chhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048090 366 SSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH---NVGIYVMLSNLYAKFCMWDEIGQLRELMK 430 (447)
Q Consensus 366 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 430 (447)
..--..++..|.+.|.+..|..-++.+++.-|. ...+...++.+|...|..++|.++...+.
T Consensus 175 ---a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 175 ---AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ---HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 001235677788999999999999999987765 55678888999999999999988776554
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.05 E-value=0.0004 Score=65.19 Aligned_cols=143 Identities=20% Similarity=0.099 Sum_probs=103.4
Q ss_pred CCCcchhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcc--------CcHHHHHHHHHH
Q 048090 257 EINKDVVLWTSMLGVYGRN-----GYFKEVIKLYEAMLMNGTKPD-EVAFVTVISACSHT--------GQVKLGIEYFEW 322 (447)
Q Consensus 257 ~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~--------~~~~~a~~~~~~ 322 (447)
..+.+...|...+.+.... +....|..+|++..+. .|+ ...+..+..++... .+...+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3677888999888875543 2367899999999985 555 34444443333221 123344444444
Q ss_pred HHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCc
Q 048090 323 MVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402 (447)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 402 (447)
.........+...|..+.-.....|++++|...+++++..+ | +..+|..++..+...|+.++|...++++..++|.+
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--M-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 33221123356778887777778899999999999999998 7 56779999999999999999999999999999987
Q ss_pred hh
Q 048090 403 VG 404 (447)
Q Consensus 403 ~~ 404 (447)
+.
T Consensus 487 pt 488 (517)
T PRK10153 487 NT 488 (517)
T ss_pred ch
Confidence 74
No 177
>PRK15331 chaperone protein SicA; Provisional
Probab=98.04 E-value=6.9e-05 Score=57.06 Aligned_cols=85 Identities=11% Similarity=-0.029 Sum_probs=39.5
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHH
Q 048090 309 HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388 (447)
Q Consensus 309 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 388 (447)
..|++++|..+|+-+..- + .-+..-|..|..++-..+++++|...|......+ ++|+..+...+.++...|+.+.|
T Consensus 49 ~~Gk~~eA~~~F~~L~~~-d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIY-D-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HCCCHHHHHHHHHHHHHh-C-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhCCHHHH
Confidence 445555555555544321 0 1123334444444445555555555554444333 33344444455555555555555
Q ss_pred HHHHHHHhh
Q 048090 389 KLAAQKALE 397 (447)
Q Consensus 389 ~~~~~~~~~ 397 (447)
+..|+.+++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 555554444
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.04 E-value=0.0002 Score=56.89 Aligned_cols=104 Identities=14% Similarity=0.090 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHH
Q 048090 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375 (447)
Q Consensus 297 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l 375 (447)
...+..+...+...|++++|...|++......-.+ ...++..+..++...|++++|+..+++..... |....++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH
Confidence 34455556666667777777777777764311111 13466777777778888888888887777654 6566666666
Q ss_pred HHHHH-------hcCCcc-------HHHHHHHHHhhhCCCc
Q 048090 376 LSACH-------DCGKFE-------LGKLAAQKALELDPHN 402 (447)
Q Consensus 376 ~~~~~-------~~g~~~-------~a~~~~~~~~~~~~~~ 402 (447)
+..+. ..|+++ +|..++++++...|++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 66666 666665 4455555566666654
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.03 E-value=0.006 Score=51.43 Aligned_cols=196 Identities=10% Similarity=-0.032 Sum_probs=99.0
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcH-hh---HHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhH
Q 048090 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDH-FT---LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226 (447)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 226 (447)
+...+-.....+...|++++|.+.|+++...- |+. .. ...+..++.+.++++.|...+++.++..|+.+--..+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 33334345555677899999999999988753 332 22 2345677888999999999999999886554333333
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcc-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 048090 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD-------VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA 299 (447)
Q Consensus 227 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 299 (447)
+-.++.++...+. ..|....... ....| ...+..++.-|-.+.-..+|...+..+... .-..
T Consensus 109 ~Y~~g~~~~~~~~-----~~~~~~~~~~--~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~---la~~- 177 (243)
T PRK10866 109 LYMRGLTNMALDD-----SALQGFFGVD--RSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR---LAKY- 177 (243)
T ss_pred HHHHHHhhhhcch-----hhhhhccCCC--ccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH---HHHH-
Confidence 3333322211110 0111000000 00000 012233333333333344444433333221 0001
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048090 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEM 359 (447)
Q Consensus 300 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 359 (447)
-..+.+-|.+.|.+..|..-++.+.+.+.-.| .......++.+|...|..++|..+...+
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11344456666667667766666665533222 2444455566666667666666655443
No 180
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.02 E-value=4.1e-05 Score=51.08 Aligned_cols=64 Identities=16% Similarity=0.330 Sum_probs=46.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHH
Q 048090 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406 (447)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 406 (447)
..|.+.+++++|.+++++++..+ |+++..+...+.++...|++++|...++++++..|.++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 45667777777777777777766 77777777777777777777777777777777777665543
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.01 E-value=4.9e-06 Score=54.68 Aligned_cols=53 Identities=25% Similarity=0.337 Sum_probs=49.1
Q ss_pred HhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 380 HDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 380 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
...|++++|...++++++..|.+..++..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999998863
No 182
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.00 E-value=9.3e-06 Score=43.59 Aligned_cols=31 Identities=35% Similarity=0.623 Sum_probs=24.6
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHhcCC
Q 048090 52 LPFNVVISDFCRNGSPLYALKTFSFMHVHGI 82 (447)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 82 (447)
++||.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888877663
No 183
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.99 E-value=8e-05 Score=52.27 Aligned_cols=79 Identities=9% Similarity=-0.059 Sum_probs=67.2
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHhcCC-CCchhhHHHHHHHhccCC--------chhHHHHHHHHHHHcCCCCchhhHH
Q 048090 55 NVVISDFCRNGSPLYALKTFSFMHVHGI-FLDTYALCSSLTASTSVK--------DARFGKQVQAHVTKSGWLSSVFVGS 125 (447)
Q Consensus 55 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 125 (447)
..-|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-..+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456667777999999999999999999 899999999999876643 3456788999999999999999999
Q ss_pred HHHHHHHc
Q 048090 126 ALIDLYAK 133 (447)
Q Consensus 126 ~l~~~~~~ 133 (447)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987654
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.98 E-value=0.00025 Score=51.87 Aligned_cols=87 Identities=18% Similarity=0.104 Sum_probs=45.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCc-hHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCC---chhHHHHHHHHHHhc
Q 048090 341 DLLCRAGELDKAWKLINEMLDRGHGSSS-VSMWGALLSACHDCGKFELGKLAAQKALELDPH---NVGIYVMLSNLYAKF 416 (447)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 416 (447)
.++-..|+.++|..+|++....|...+. ...+..+..++...|++++|..++++.....|+ +......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 3444555666666666665555532211 223444555555566666666666655555454 444444444455555
Q ss_pred CChHHHHHHHH
Q 048090 417 CMWDEIGQLRE 427 (447)
Q Consensus 417 g~~~~A~~~~~ 427 (447)
|+.++|++.+-
T Consensus 89 gr~~eAl~~~l 99 (120)
T PF12688_consen 89 GRPKEALEWLL 99 (120)
T ss_pred CCHHHHHHHHH
Confidence 66666555443
No 185
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.0078 Score=52.73 Aligned_cols=172 Identities=10% Similarity=-0.038 Sum_probs=93.1
Q ss_pred HhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhh------------
Q 048090 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL------------ 264 (447)
Q Consensus 197 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------------ 264 (447)
+.-.++.+.|.++--.+++.. ..+......-..++.-.++.+.|...|++...+ .|+...
T Consensus 179 l~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l-----dpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRL-----DPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhcc-----ChhhhhHHhHhhhHHHHH
Confidence 345566666666666666541 112222222222334456667777777654332 222221
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhhHHHH
Q 048090 265 -WTSMLGVYGRNGYFKEVIKLYEAMLMN---GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG-PEHYSCL 339 (447)
Q Consensus 265 -~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 339 (447)
+..=.+-..+.|++..|.+.|.+.+.. ++.|+...|.....+..+.|+.++|+.--+... .+.|. ...|..-
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~r 327 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRR 327 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHH
Confidence 111122345677788888888777653 234455666666667777788888877777665 23333 3334444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHH
Q 048090 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379 (447)
Q Consensus 340 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~ 379 (447)
..++.-.++|++|.+-++...+..-.+....++.-...++
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aL 367 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLAL 367 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 4555666777777777777766543333333333333333
No 186
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.96 E-value=0.00015 Score=65.18 Aligned_cols=136 Identities=11% Similarity=0.016 Sum_probs=92.8
Q ss_pred HHHHHHHh-hhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048090 209 VHAYMIRK-CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287 (447)
Q Consensus 209 ~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 287 (447)
++..|.+. ..+.+.+......+++......+.+.+..++-+........ ..-..|..++++.|.+.|..+.++.+++.
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~-~~~~~t~ha~vR~~l~~~~~~~~l~~L~n 128 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCS-YLLPSTHHALVRQCLELGAEDELLELLKN 128 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccc-cccCccHHHHHHHHHhcCCHHHHHHHHhC
Confidence 45555443 22344555667777777777777888888887654432222 11233445888888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc
Q 048090 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346 (447)
Q Consensus 288 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 346 (447)
=...|+-||..+++.|++.+.+.|++..|.++...|..+ +...+..|+..-+.+|.+.
T Consensus 129 ~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 129 RLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 888888888888888888888888888888888877665 4455556655555545444
No 187
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.94 E-value=0.00022 Score=60.51 Aligned_cols=101 Identities=16% Similarity=0.134 Sum_probs=54.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCchHhHHH
Q 048090 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGELDKAWKLINEMLDRG-HGSSSVSMWGA 374 (447)
Q Consensus 300 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~~ 374 (447)
|...+....+.|++++|...|+.+.+. .|+ ...+..+..+|...|++++|...|+.+.+.. ..|....++..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 444443334456666666666666654 232 2345555566666666666666666665443 01122333444
Q ss_pred HHHHHHhcCCccHHHHHHHHHhhhCCCch
Q 048090 375 LLSACHDCGKFELGKLAAQKALELDPHNV 403 (447)
Q Consensus 375 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 403 (447)
++.++...|+.+.|..+++++++..|.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 55555566666666666666666666544
No 188
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.93 E-value=0.0003 Score=49.46 Aligned_cols=79 Identities=16% Similarity=0.301 Sum_probs=61.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHHHHhcCCCCChhhH
Q 048090 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGT-KPDEVAFVTVISACSHTG--------QVKLGIEYFEWMVHDYKLEPGPEHY 336 (447)
Q Consensus 266 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 336 (447)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|... +++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 4455566666899999999999999998 889999999988876532 345567788888876 788888888
Q ss_pred HHHHHHHHH
Q 048090 337 SCLVDLLCR 345 (447)
Q Consensus 337 ~~l~~~~~~ 345 (447)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888877654
No 189
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.00019 Score=62.50 Aligned_cols=96 Identities=22% Similarity=0.188 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHH
Q 048090 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413 (447)
Q Consensus 334 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 413 (447)
.+++.|.-++.+.+++.+|++...+.+..+ |++..+...-+.++...|+++.|+..|+++++..|.|..+-..++.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD--PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 457778889999999999999999999987 999999999999999999999999999999999999999999999887
Q ss_pred HhcCChHHH-HHHHHHHHH
Q 048090 414 AKFCMWDEI-GQLRELMKE 431 (447)
Q Consensus 414 ~~~g~~~~A-~~~~~~m~~ 431 (447)
.+...+.+. .++|..|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 776666554 788998875
No 190
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.93 E-value=0.0036 Score=54.41 Aligned_cols=134 Identities=18% Similarity=0.222 Sum_probs=76.0
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCC-----CC
Q 048090 265 WTSMLGVYGRN-GYFKEVIKLYEAMLMN----GTKPD--EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE-----PG 332 (447)
Q Consensus 265 ~~~l~~~~~~~-g~~~~a~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~ 332 (447)
+..+...|... |++++|.+.|++..+. | .+. ...+..+...+.+.|++++|.++|+++... ... .+
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~-~l~~~l~~~~ 194 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK-CLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-CCCHCTTGHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-hhcccccchh
Confidence 33445566666 7888888888887543 2 221 345667777888899999999999988764 221 12
Q ss_pred h-hhHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCC-chHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCC
Q 048090 333 P-EHYSCLVDLLCRAGELDKAWKLINEMLDRG--HGSS-SVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401 (447)
Q Consensus 333 ~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 401 (447)
. ..+...+-++...|+...|...+++..... +..+ .......|+.++ ..||.+.......+.-+..+-
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTTSS--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHcccCcc
Confidence 2 223344556777899999999999987654 2111 222344555555 445555544444444444433
No 191
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.93 E-value=0.012 Score=51.32 Aligned_cols=296 Identities=17% Similarity=0.080 Sum_probs=189.9
Q ss_pred HHHHHHHHH--ccCChhhHHHHhccCC---CCchhhHHHHHHH--HHhcCCHHHHHHHHHhhhhcCCCCcHhh--HHHHH
Q 048090 124 GSALIDLYA--KLLLIHDAELMFDEIP---VKNSVCANALLSG--YCEAKLWAGGLELVRLMPALGLDYDHFT--LSALL 194 (447)
Q Consensus 124 ~~~l~~~~~--~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~ 194 (447)
|..|-.++. -.|+-..|.++-.+-. ..|....-.++.+ -.-.|+++.|.+-|+.|.. .|.... ...|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHH
Confidence 334444433 3567777766654432 3454444444443 3456999999999999986 243322 22233
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhh--HHHHHHHH
Q 048090 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL--WTSMLGVY 272 (447)
Q Consensus 195 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~ 272 (447)
-..-+.|+.+.|..+-+..-.. -+.-...+.+.+...+..|+|+.|+++.+.-... .-+.+++.- -..|+.+-
T Consensus 162 leAqr~GareaAr~yAe~Aa~~---Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~--~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEK---APQLPWAARATLEARCAAGDWDGALKLVDAQRAA--KVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhh---ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH--HhhchhhHHHHHHHHHHHH
Confidence 3345778888888888777665 2334567888999999999999999999854332 123344322 22232221
Q ss_pred H---hcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC
Q 048090 273 G---RNGYFKEVIKLYEAMLMNGTKPDEV-AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348 (447)
Q Consensus 273 ~---~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 348 (447)
. -.-+...|...-.+..+ +.||.. .-.....++.+.|+..++-.+++.+-+. .|.+..+...+ +.+.|+
T Consensus 237 A~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gd 309 (531)
T COG3898 237 AMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGD 309 (531)
T ss_pred HHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCC
Confidence 1 12345556665555544 455533 2334456889999999999999999854 67776665544 456665
Q ss_pred HHHHHHHHHHHHh-CCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHH-hcCChHHHHHHH
Q 048090 349 LDKAWKLINEMLD-RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYA-KFCMWDEIGQLR 426 (447)
Q Consensus 349 ~~~A~~~~~~~~~-~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~ 426 (447)
.. +.-+++..+ ...+|++..+...+..+-...|++..|..--+.+....| ...+|-.|.+.-. ..|+-.++...+
T Consensus 310 ta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 310 TA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred cH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHH
Confidence 43 333333221 123488888888999999999999999988888887776 4556777776654 459999999999
Q ss_pred HHHHHcCCCCC
Q 048090 427 ELMKEKGLKKD 437 (447)
Q Consensus 427 ~~m~~~~~~p~ 437 (447)
-+..+..-+|+
T Consensus 387 Aqav~APrdPa 397 (531)
T COG3898 387 AQAVKAPRDPA 397 (531)
T ss_pred HHHhcCCCCCc
Confidence 98888766665
No 192
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.86 E-value=2.3e-05 Score=42.00 Aligned_cols=29 Identities=24% Similarity=0.597 Sum_probs=20.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048090 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292 (447)
Q Consensus 264 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 292 (447)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776655
No 193
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.83 E-value=7.2e-05 Score=49.86 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=54.3
Q ss_pred HHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 048090 376 LSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433 (447)
Q Consensus 376 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 433 (447)
...|.+.+++++|..++++++..+|.++..+...+.++.+.|++++|.+.+++..+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 4578899999999999999999999999999999999999999999999999999743
No 194
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.83 E-value=0.01 Score=48.75 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHhhhCCCch---hHHHHHHHHHHhcCChHHHH
Q 048090 373 GALLSACHDCGKFELGKLAAQKALELDPHNV---GIYVMLSNLYAKFCMWDEIG 423 (447)
Q Consensus 373 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~ 423 (447)
..++..|.+.|.+..|..-++.+++.-|++. .+...++.+|.+.|..+.|.
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3467788899999999999999999888744 46778888899999887543
No 195
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.83 E-value=0.00027 Score=61.38 Aligned_cols=135 Identities=11% Similarity=0.050 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHH---HHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHH----HhCCCCCCch
Q 048090 298 VAFVTVISACSHTGQVKLGIEYFEWM---VHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEM----LDRGHGSSSV 369 (447)
Q Consensus 298 ~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~p~~~ 369 (447)
..|..|...|.-.|+++.|+...+.= .+.+|-.. ....+..|..++.-.|+++.|.+.|+.. ++.|-+....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 34666666677788999998766542 23334333 2566788889999999999999998874 3444334455
Q ss_pred HhHHHHHHHHHhcCCccHHHHHHHHHhhhC------CCchhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 370 SMWGALLSACHDCGKFELGKLAAQKALELD------PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
.+..+|...|.-..++++|+.++++=+.+- ......+.+|+.+|...|..++|+.+.+.-...
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 567889999999999999999888655432 235678999999999999999999887766543
No 196
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.0016 Score=54.82 Aligned_cols=107 Identities=18% Similarity=0.135 Sum_probs=87.2
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCchH
Q 048090 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG---ELDKAWKLINEMLDRGHGSSSVS 370 (447)
Q Consensus 294 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~ 370 (447)
+-|...|..|..+|...|++..|..-|.+..+- ..++...+..+..++.... ...++..+|++++..+ |.++.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D--~~~ir 228 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD--PANIR 228 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC--CccHH
Confidence 337888999999999999999999999988754 2345666666766655432 4678899999999887 89999
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchh
Q 048090 371 MWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404 (447)
Q Consensus 371 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 404 (447)
+...|...+...|++.+|...|+.+++..|++..
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999999998877543
No 197
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.77 E-value=0.0063 Score=47.19 Aligned_cols=136 Identities=10% Similarity=0.034 Sum_probs=89.2
Q ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHH
Q 048090 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS 337 (447)
Q Consensus 258 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 337 (447)
..|++..--.+..++.+.|+..+|...|++...--..-|......+.++....+++..|...++++.+...-.-++.+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 45666666677777778888888888887776544445666777777777777888888888877765421111344556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHh
Q 048090 338 CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL 396 (447)
Q Consensus 338 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 396 (447)
.+.+.|...|+...|+.-|+.....- | +...-......+.+.|+.+++..-+..+.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y--p-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY--P-GPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC--C-CHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 66777777888888888887777664 3 33334445555667776666655444443
No 198
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.74 E-value=0.04 Score=51.83 Aligned_cols=131 Identities=11% Similarity=-0.003 Sum_probs=77.7
Q ss_pred cchHHHhhccCCCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhc-CCCCchhhHHHH-------HHHhccCCchhHHHH
Q 048090 36 LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH-GIFLDTYALCSS-------LTASTSVKDARFGKQ 107 (447)
Q Consensus 36 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l-------l~~~~~~~~~~~a~~ 107 (447)
+++|..+.+. .|.+..|..|.......-.++-|...|-+.... |++.-.. ...+ ...-.-.|++++|++
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkr-l~~i~s~~~q~aei~~~~g~feeaek 755 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKR-LRTIHSKEQQRAEISAFYGEFEEAEK 755 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHH-hhhhhhHHHHhHhHhhhhcchhHhhh
Confidence 4445544443 467778888887766666666666666554321 2211000 0000 011123478899998
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCC-----chhhHHHHHHHHHhcCCHHHHHHHHHhh
Q 048090 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK-----NSVCANALLSGYCEAKLWAGGLELVRLM 178 (447)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (447)
+|-+|-+++ ..+..+.+.|++-...++++.-... -...|+.+...+.....|++|.+.|..-
T Consensus 756 ~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 756 LYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred hhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888776653 3456677778888877777664322 2345777777777777777777777654
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.73 E-value=0.00085 Score=56.97 Aligned_cols=94 Identities=10% Similarity=0.001 Sum_probs=55.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc---hHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCC---chhHHHHH
Q 048090 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSS---VSMWGALLSACHDCGKFELGKLAAQKALELDPH---NVGIYVML 409 (447)
Q Consensus 336 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l 409 (447)
|..-+..+.+.|++++|...|+.+++.. |++ ..++.-++.+|...|++++|...|+++++..|. .+.++..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3333333345566666666666666654 544 234566666666666666666666666665544 34445555
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 048090 410 SNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 410 ~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
+..+...|++++|..+++++.+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5566666666666666666655
No 200
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.05 Score=51.61 Aligned_cols=331 Identities=11% Similarity=0.034 Sum_probs=180.7
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCch--hHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 048090 55 NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA--RFGKQVQAHVTKSGWLSSVFVGSALIDLYA 132 (447)
Q Consensus 55 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 132 (447)
..+++-+...+.+..|+++-..+...-..- ...|.....-..+..+. +.+.+.+.+=++... .+...|..+.....
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHH
Confidence 345666777778888888777764322121 44555555555444222 223333332222222 23334555666666
Q ss_pred ccCChhhHHHHhccCCCC--------chhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHH
Q 048090 133 KLLLIHDAELMFDEIPVK--------NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204 (447)
Q Consensus 133 ~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 204 (447)
.+|+.+-|..+++.=+.. +..-+..-+.-+...|+.+-...++..+.+. .+...|... ..+..
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~------l~~~p 589 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMT------LRNQP 589 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHH------HHhch
Confidence 778888888777654321 2223444455556666666666666655542 111111111 12344
Q ss_pred HHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCH------
Q 048090 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF------ 278 (447)
Q Consensus 205 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~------ 278 (447)
.|..+|.+..+.. +. ..+-..| ..++-..+...|..-.........+-..........+.+....
T Consensus 590 ~a~~lY~~~~r~~-----~~---~~l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka 660 (829)
T KOG2280|consen 590 LALSLYRQFMRHQ-----DR---ATLYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKA 660 (829)
T ss_pred hhhHHHHHHHHhh-----ch---hhhhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHH
Confidence 5666666666541 11 1111222 2222222222222000000000111122233334444444331
Q ss_pred ----HHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHH
Q 048090 279 ----KEVIKLYEAMLMN-GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353 (447)
Q Consensus 279 ----~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 353 (447)
.+-+.+.+.+... |......+.+--+.-+...|+..+|.++-.+.+ .|+...|..-+.+++..+++++-+
T Consensus 661 ~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLe 735 (829)
T KOG2280|consen 661 LEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELE 735 (829)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHH
Confidence 1122222333222 334455566666777778899999998876663 688889999999999999999988
Q ss_pred HHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHH
Q 048090 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQL 425 (447)
Q Consensus 354 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 425 (447)
++-+.... | .-|.-...+|.+.|+.++|..++-+.-. .+ -...+|.+.|++.+|.++
T Consensus 736 kfAkskks----P---IGy~PFVe~c~~~~n~~EA~KYiprv~~----l~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 736 KFAKSKKS----P---IGYLPFVEACLKQGNKDEAKKYIPRVGG----LQ----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHHhccCC----C---CCchhHHHHHHhcccHHHHhhhhhccCC----hH----HHHHHHHHhccHHHHHHH
Confidence 87766542 2 2278889999999999999988875532 11 567789999999998764
No 201
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.69 E-value=0.013 Score=54.32 Aligned_cols=93 Identities=17% Similarity=0.199 Sum_probs=51.4
Q ss_pred CCCccHHHHHHHHHhCCChhhHHHHH---------HHHHhcCCCCchhhHHHHHHHhccCCchhHHH--HHHHHHHHcCC
Q 048090 49 RNPLPFNVVISDFCRNGSPLYALKTF---------SFMHVHGIFLDTYALCSSLTASTSVKDARFGK--QVQAHVTKSGW 117 (447)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~a~~~~---------~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~--~~~~~~~~~~~ 117 (447)
+-+..+.+-+..|...|.+++|..+- +.+... ..+.-.++..=++|.+.++..--. .-++++.++|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 44566677777888888888876542 111111 012223444444555555544322 23456666776
Q ss_pred CCchhhHHHHHHHHHccCChhhHHHHhcc
Q 048090 118 LSSVFVGSALIDLYAKLLLIHDAELMFDE 146 (447)
Q Consensus 118 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 146 (447)
.|+... +...++-.|++.+|-++|.+
T Consensus 632 ~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 632 TPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred CchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 666543 44556667777777766654
No 202
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.69 E-value=0.025 Score=50.15 Aligned_cols=172 Identities=16% Similarity=0.147 Sum_probs=94.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048090 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR---NGYFKEVIKLYEAMLMNGTKPDEVAFVTVIS 305 (447)
Q Consensus 229 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 305 (447)
.++-+|....+++...++.+.+.....-........-....-++-+ .|+.++|.+++..+......+++.+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444566666666666666655443111111122222233444445 6777777777777555555666667766665
Q ss_pred HHhc---------cCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC-HH---HHHHHH----HHHHhCCCCC--
Q 048090 306 ACSH---------TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE-LD---KAWKLI----NEMLDRGHGS-- 366 (447)
Q Consensus 306 ~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~----~~~~~~~~~p-- 366 (447)
.|-. ....++|+..|.+.- .+.|+...--.+...+...|. ++ +..++- ..+.+.|...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5432 223667777777654 345553332222223333332 22 222222 1122233222
Q ss_pred CchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCch
Q 048090 367 SSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403 (447)
Q Consensus 367 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 403 (447)
.+.-.+.+++.++.-.|++++|.+..+++.+..|+.-
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 2444466789999999999999999999999887654
No 203
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.68 E-value=0.00023 Score=63.46 Aligned_cols=100 Identities=15% Similarity=0.027 Sum_probs=76.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchH---hHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHH
Q 048090 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVS---MWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408 (447)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 408 (447)
+...++.+..+|...|++++|+..|++.++.+ |++.. +|+.+..+|...|++++|...++++++..++ .|..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~ 148 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFST 148 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHH
Confidence 47788999999999999999999999999887 87764 4999999999999999999999999997422 1221
Q ss_pred HHH--HHHhcCChHHHHHHHHHHHHcCCCC
Q 048090 409 LSN--LYAKFCMWDEIGQLRELMKEKGLKK 436 (447)
Q Consensus 409 l~~--~~~~~g~~~~A~~~~~~m~~~~~~p 436 (447)
+.. .+....+.++..++++...+.|...
T Consensus 149 i~~DpdL~plR~~pef~eLlee~rk~G~~~ 178 (453)
T PLN03098 149 ILNDPDLAPFRASPEFKELQEEARKGGEDI 178 (453)
T ss_pred HHhCcchhhhcccHHHHHHHHHHHHhCCcc
Confidence 111 1223344557778888888877643
No 204
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.67 E-value=0.00099 Score=51.50 Aligned_cols=70 Identities=24% Similarity=0.243 Sum_probs=56.2
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHH-----HcCCCCCCcc
Q 048090 371 MWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMK-----EKGLKKDVGC 440 (447)
Q Consensus 371 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~ 440 (447)
+...++..+...|+++.|...+++++..+|-+...|..++.+|...|+..+|.+.|+++. +.|+.|++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 466788888899999999999999999999999999999999999999999999998874 3588888654
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.011 Score=48.58 Aligned_cols=136 Identities=12% Similarity=0.075 Sum_probs=110.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHH--
Q 048090 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV-- 340 (447)
Q Consensus 263 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-- 340 (447)
...+.++.++...|.+.-....+++.++.....++.....|.+.-.+.|+.+.|..+|++..+. .-+.+..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHh
Confidence 3456777888888999999999999999776668888889999999999999999999988765 3344444444433
Q ss_pred ---HHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCC
Q 048090 341 ---DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401 (447)
Q Consensus 341 ---~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 401 (447)
..|.-.+++.+|...+.+....+ |.++.+.+.-.-+..-.|+..+|.+.++.+++..|.
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D--~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMD--PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccC--CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 33556788999999999998887 778887888888888899999999999999998875
No 206
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.63 E-value=0.042 Score=49.02 Aligned_cols=382 Identities=10% Similarity=0.032 Sum_probs=201.6
Q ss_pred CCcchHHHhhccCCC---CCCcc------HHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHH--hccCCch
Q 048090 34 KNLGTLTNCLKFLNP---RNPLP------FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA--STSVKDA 102 (447)
Q Consensus 34 ~~~~~A~~~~~~~~~---~~~~~------~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~ 102 (447)
++..+|.++|.++.+ .++.. -+.++++|..+ +.+.....+....+. .| ...|..+..+ +-+.+.+
T Consensus 20 ~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 20 KKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred hhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhhhH
Confidence 368999999988753 23322 34667777643 455555555555543 23 3345455544 4567888
Q ss_pred hHHHHHHHHHHHc--CCCC------------chhhHHHHHHHHHccCChhhHHHHhccCCC--------CchhhHHHHHH
Q 048090 103 RFGKQVQAHVTKS--GWLS------------SVFVGSALIDLYAKLLLIHDAELMFDEIPV--------KNSVCANALLS 160 (447)
Q Consensus 103 ~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~ 160 (447)
+.|.+.+...... +..| |-..-+..++++...|++.+++.+++++.+ -+..+|+.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 9998888766554 2221 222235667888899999999999888762 37888888666
Q ss_pred HHHhcC---------------CHHHHHHHHHhhhhc------CCCCcHhhHHHHHHHHhcC--CcHHHHHHHHHHHHHhh
Q 048090 161 GYCEAK---------------LWAGGLELVRLMPAL------GLDYDHFTLSALLRACAGL--SAAEFGRQVHAYMIRKC 217 (447)
Q Consensus 161 ~~~~~~---------------~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~ 217 (447)
.+.++- -++.+.-...+|... .+.|.......++....-. .+..--.++++.-...
T Consensus 176 mlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~- 254 (549)
T PF07079_consen 176 MLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENF- 254 (549)
T ss_pred HHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhh-
Confidence 555431 122333333333322 2334444444444433211 1112222222222222
Q ss_pred hcCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhhhhhcccC-CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048090 218 CNLGNDV-FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE-INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295 (447)
Q Consensus 218 ~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 295 (447)
-+.|+- -+...+...+.. +.+++..+-+.+....... ...-+.+|..++....+.++...|...+.-+... .|
T Consensus 255 -yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp 329 (549)
T PF07079_consen 255 -YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DP 329 (549)
T ss_pred -ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CC
Confidence 122322 122333333333 3444443333221110000 1112345666666677777777777666655442 22
Q ss_pred CHHH----------H-----------------------------------HHHHHH---HhccCc-HHHHHHHHHHHHHh
Q 048090 296 DEVA----------F-----------------------------------VTVISA---CSHTGQ-VKLGIEYFEWMVHD 326 (447)
Q Consensus 296 ~~~~----------~-----------------------------------~~ll~~---~~~~~~-~~~a~~~~~~~~~~ 326 (447)
+... + ..++.+ +-+.|. -++|+++++.+.+
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~- 408 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ- 408 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-
Confidence 2111 1 111111 111222 4556666666553
Q ss_pred cCCCC-ChhhHHHHH----HHHH---HcCCHHHHHHHHHHHHhCCCCCCchH---hHHHHHH--HHHhcCCccHHHHHHH
Q 048090 327 YKLEP-GPEHYSCLV----DLLC---RAGELDKAWKLINEMLDRGHGSSSVS---MWGALLS--ACHDCGKFELGKLAAQ 393 (447)
Q Consensus 327 ~~~~~-~~~~~~~l~----~~~~---~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~~l~~--~~~~~g~~~~a~~~~~ 393 (447)
+.| |..+-|.+. ..|. ....+..-..+-+-+.+.|+.|-++. .-+.|.. .+...|++.++.-.-.
T Consensus 409 --ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~ 486 (549)
T PF07079_consen 409 --FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSS 486 (549)
T ss_pred --hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 222 222222221 1221 12334444444455556676554332 2333333 4567899998888777
Q ss_pred HHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048090 394 KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELM 429 (447)
Q Consensus 394 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 429 (447)
-..+..| ++.+|..++-+.....++++|+.++..+
T Consensus 487 WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 487 WLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 7777888 9999999999999999999999988754
No 207
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.63 E-value=0.003 Score=46.23 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=28.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 048090 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPD--EVAFVTVISACSHTGQVKLGIEYFEWMVHD 326 (447)
Q Consensus 269 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 326 (447)
..++-..|+.++|+.+|++....|...+ ...+-.+..++...|++++|..+|++....
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444455555555555555555544332 123334444455555555555555555443
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.023 Score=46.76 Aligned_cols=153 Identities=12% Similarity=0.051 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 048090 278 FKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLIN 357 (447)
Q Consensus 278 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 357 (447)
.+.-.++|++-.. ...+.++..+...|.+.-....+.++++. .-+.++.....|++.-.+.|+.+.|...|+
T Consensus 165 ~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~ 236 (366)
T KOG2796|consen 165 EESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQ 236 (366)
T ss_pred hhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3555566655332 34567777788888899999999999876 445568888899999999999999999999
Q ss_pred HHHhCCCCC----CchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 048090 358 EMLDRGHGS----SSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433 (447)
Q Consensus 358 ~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 433 (447)
+..+..-.- ............+.-.+++..|...+.+....+|.++...+.-+.+..-.|+..+|++.++.|...
T Consensus 237 ~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~- 315 (366)
T KOG2796|consen 237 DVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ- 315 (366)
T ss_pred HHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 665443222 233344555667778889999999999999999999999988888888899999999999999874
Q ss_pred CCCCCcc
Q 048090 434 LKKDVGC 440 (447)
Q Consensus 434 ~~p~~~~ 440 (447)
.|.+.+
T Consensus 316 -~P~~~l 321 (366)
T KOG2796|consen 316 -DPRHYL 321 (366)
T ss_pred -CCccch
Confidence 444433
No 209
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.58 E-value=0.03 Score=45.97 Aligned_cols=45 Identities=11% Similarity=0.112 Sum_probs=20.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCchH---hHHHHHHHHHhcCCcc
Q 048090 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVS---MWGALLSACHDCGKFE 386 (447)
Q Consensus 340 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~ 386 (447)
.+.|.+.|.+..|..-++.+++.- |+... +...++.++.+.|..+
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~y--p~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENY--PDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhCChH
Confidence 344555555555555555555443 32222 2334444555555444
No 210
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.56 E-value=0.00058 Score=54.47 Aligned_cols=99 Identities=9% Similarity=0.126 Sum_probs=79.3
Q ss_pred hHHHhhccC--CCCCCccHHHHHHHHHhC-----CChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccC-----------
Q 048090 38 TLTNCLKFL--NPRNPLPFNVVISDFCRN-----GSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSV----------- 99 (447)
Q Consensus 38 ~A~~~~~~~--~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----------- 99 (447)
.-...|+.. ...+-.+|..+++.+.+. |.++=....+..|.+.|+.-|..+|+.|+..+-+.
T Consensus 32 ~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 32 PHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred chHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 345566665 457888899999888754 67777888899999999999999999999987653
Q ss_pred -----CchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCC
Q 048090 100 -----KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136 (447)
Q Consensus 100 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 136 (447)
.+-+-|.+++++|...|+-||.+++..+++.+.+.+.
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346688899999999999999999999888876654
No 211
>PRK11906 transcriptional regulator; Provisional
Probab=97.55 E-value=0.0031 Score=56.66 Aligned_cols=160 Identities=9% Similarity=0.082 Sum_probs=100.2
Q ss_pred hhH--HHHHHHHHhc-----CCHHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhcc---------CcHHHHHHHHHHHH
Q 048090 263 VLW--TSMLGVYGRN-----GYFKEVIKLYEAMLMN-GTKPD-EVAFVTVISACSHT---------GQVKLGIEYFEWMV 324 (447)
Q Consensus 263 ~~~--~~l~~~~~~~-----g~~~~a~~~~~~m~~~-~~~p~-~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~ 324 (447)
..| ...+.+.... ...+.|..+|.+.... ...|+ ...|..+..++... ....+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554432 1345677788887722 24454 44555555444321 23344555555555
Q ss_pred HhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCch
Q 048090 325 HDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403 (447)
Q Consensus 325 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 403 (447)
+ +.| |......+..+..-.++++.|..+|++....+ |+...+|......+.-.|+.++|.+.+++++++.|-..
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 3 233 46666666666677777888888888888777 88888888888888888888888888888888887643
Q ss_pred --hHHHHHHHHHHhcCChHHHHHHHHH
Q 048090 404 --GIYVMLSNLYAKFCMWDEIGQLREL 428 (447)
Q Consensus 404 --~~~~~l~~~~~~~g~~~~A~~~~~~ 428 (447)
.+....+..|+..+ .++|+.++-+
T Consensus 407 ~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 407 KAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 33344444565554 5667666543
No 212
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.54 E-value=9.6e-05 Score=40.29 Aligned_cols=32 Identities=38% Similarity=0.520 Sum_probs=29.6
Q ss_pred HHHHhhhCCCchhHHHHHHHHHHhcCChHHHH
Q 048090 392 AQKALELDPHNVGIYVMLSNLYAKFCMWDEIG 423 (447)
Q Consensus 392 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 423 (447)
|+++++.+|+++.+|..++.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67899999999999999999999999999986
No 213
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.53 E-value=0.042 Score=51.68 Aligned_cols=51 Identities=10% Similarity=0.025 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHH
Q 048090 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211 (447)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 211 (447)
....-.+...+.+.|.-++|.+.+-+.- .|. ..+..|...++|.+|.++-+
T Consensus 852 s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 852 SELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred cchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666665544322 121 23344555566666655544
No 214
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.48 E-value=0.063 Score=47.19 Aligned_cols=108 Identities=18% Similarity=0.175 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHH
Q 048090 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376 (447)
Q Consensus 297 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~ 376 (447)
..+.+..|.-|...|+...|.++-.+. . .|+...|...+.+++..++|++-..+... . - + +.-|..++
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F----k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k-K-s--PIGyepFv 244 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF----K-VPDKRFWWLKIKALAENKDWDELEKFAKS---K-K-S--PIGYEPFV 244 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc----C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C-C-C--CCChHHHH
Confidence 345556666777788887777664444 4 47888899999999999999988876543 1 1 2 23388999
Q ss_pred HHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHH
Q 048090 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQL 425 (447)
Q Consensus 377 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 425 (447)
.+|.+.|+..+|..+..++ + +..-+..|.+.|++.+|.+.
T Consensus 245 ~~~~~~~~~~eA~~yI~k~----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 245 EACLKYGNKKEASKYIPKI----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHCCCHHHHHHHHHhC----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 9999999999998888772 1 24566778899999888754
No 215
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.48 E-value=0.00028 Score=41.35 Aligned_cols=41 Identities=27% Similarity=0.403 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHH
Q 048090 371 MWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411 (447)
Q Consensus 371 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 411 (447)
++..+..+|...|++++|.++++++++..|+|+..+..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 46778888888888888888888888888888887777653
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.44 E-value=0.00023 Score=48.14 Aligned_cols=63 Identities=13% Similarity=0.218 Sum_probs=40.6
Q ss_pred hHhHHHHHHHHHhcCCccHHHHHHHHHhhhC---C-C---chhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 369 VSMWGALLSACHDCGKFELGKLAAQKALELD---P-H---NVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 369 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~-~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
..+++.+..+|...|++++|...++++++.. + . ...++..++.+|...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4456667777777777777777777666531 1 1 245677777777777777777777776543
No 217
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.37 E-value=0.0026 Score=57.06 Aligned_cols=65 Identities=22% Similarity=0.158 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048090 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP----EHYSCLVDLLCRAGELDKAWKLINEMLDR 362 (447)
Q Consensus 295 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 362 (447)
.+...++.+..+|...|++++|+..|++.++ +.|+. .+|..+..+|...|++++|++.++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567889999999999999999999999885 46763 35889999999999999999999999986
No 218
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.30 E-value=0.0054 Score=44.43 Aligned_cols=88 Identities=25% Similarity=0.171 Sum_probs=41.5
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhC-CCc---hhHHHHHHHHHHhcCC
Q 048090 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD-PHN---VGIYVMLSNLYAKFCM 418 (447)
Q Consensus 343 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~g~ 418 (447)
+...|+++.|++.|.+.+..- |....+|+.-.+++.-.|+.++|..-+.+++++. +.. ...|..-+..|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 344455555555555544433 4455555555555555555555555555555543 221 1123333334444555
Q ss_pred hHHHHHHHHHHHHc
Q 048090 419 WDEIGQLRELMKEK 432 (447)
Q Consensus 419 ~~~A~~~~~~m~~~ 432 (447)
-+.|..-|+.....
T Consensus 131 dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 131 DDAARADFEAAAQL 144 (175)
T ss_pred hHHHHHhHHHHHHh
Confidence 55555544444433
No 219
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.30 E-value=0.12 Score=46.32 Aligned_cols=399 Identities=10% Similarity=-0.025 Sum_probs=219.9
Q ss_pred hhhHHHhhhhhhhhhcccccCCcchHHHhhccCCCCCC---ccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHH
Q 048090 14 ICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNP---LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALC 90 (447)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 90 (447)
..|...|=+|+..|...++ .+.-.++++++..|-+ .+|..-|++-...+++.....+|.+.+.... +...|.
T Consensus 39 PtnI~S~fqLiq~~~tq~s---~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~ 113 (660)
T COG5107 39 PTNILSYFQLIQYLETQES---MDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWM 113 (660)
T ss_pred chhHHHHHHHHHHHhhhhh---HHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHH
Confidence 3567788888988888874 8888888888887765 3577777777778888888889988887644 355555
Q ss_pred HHHHHhccCCchh------HHHHHHHHHHH-cCCCCchh-hHHHHHH---HHHccC------ChhhHHHHhccCCC-C--
Q 048090 91 SSLTASTSVKDAR------FGKQVQAHVTK-SGWLSSVF-VGSALID---LYAKLL------LIHDAELMFDEIPV-K-- 150 (447)
Q Consensus 91 ~ll~~~~~~~~~~------~a~~~~~~~~~-~~~~~~~~-~~~~l~~---~~~~~g------~~~~a~~~~~~~~~-~-- 150 (447)
.-+....+.++.- ...+.|+-.+. .++.|-.. .|+..+. ..-..| +++...+.+.++.. |
T Consensus 114 lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~ 193 (660)
T COG5107 114 LYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMG 193 (660)
T ss_pred HHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccc
Confidence 5555443333211 11122332222 33444332 3333332 222223 34455556655542 2
Q ss_pred -------chhhHHHHHHH-----HHh--cCCHHHHHHHHHhhhh--cCCC----CcHhhHHH-----------HHHHHhc
Q 048090 151 -------NSVCANALLSG-----YCE--AKLWAGGLELVRLMPA--LGLD----YDHFTLSA-----------LLRACAG 199 (447)
Q Consensus 151 -------~~~~~~~l~~~-----~~~--~~~~~~a~~~~~~~~~--~~~~----~~~~~~~~-----------l~~~~~~ 199 (447)
|-..|..=++. +.. .--+-.|.+.++++.. .|.. .+..+++. .|.--..
T Consensus 194 nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~e 273 (660)
T COG5107 194 NLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEME 273 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhc
Confidence 11111111111 110 1113345555555432 1211 11222222 1111000
Q ss_pred ------CCcH-HHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHH
Q 048090 200 ------LSAA-EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272 (447)
Q Consensus 200 ------~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 272 (447)
.+-. ....-++++.+.- +.....+|.---..+...++-+.|+........+ .|+.. ..+-..|
T Consensus 274 n~l~L~~~~~~qRi~y~~~q~~~y---~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~-----spsL~--~~lse~y 343 (660)
T COG5107 274 NGLKLGGRPHEQRIHYIHNQILDY---FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM-----SPSLT--MFLSEYY 343 (660)
T ss_pred CCcccCCCcHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC-----CCchh--eeHHHHH
Confidence 0001 1112223333332 2233344444444445667777777776643221 22211 1112222
Q ss_pred HhcCCHHHHHHHHHHHHh--------------CCCC--C-------------CHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 048090 273 GRNGYFKEVIKLYEAMLM--------------NGTK--P-------------DEVAFVTVISACSHTGQVKLGIEYFEWM 323 (447)
Q Consensus 273 ~~~g~~~~a~~~~~~m~~--------------~~~~--p-------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 323 (447)
.-.++.+.....|+...+ .+.. | -..+|...+.+..+..-++.|..+|-++
T Consensus 344 el~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~ 423 (660)
T COG5107 344 ELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKL 423 (660)
T ss_pred hhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 223333333333332211 0110 0 1234556677777778889999999999
Q ss_pred HHhcC-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCc
Q 048090 324 VHDYK-LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402 (447)
Q Consensus 324 ~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 402 (447)
.+. + +.+++..+++++..+ ..|+...|..+|+--+..- |++...-+..+..+...++-+.|..+|+..++.-..+
T Consensus 424 rk~-~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~ 499 (660)
T COG5107 424 RKE-GIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKF--PDSTLYKEKYLLFLIRINDEENARALFETSVERLEKT 499 (660)
T ss_pred hcc-CCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHh
Confidence 877 5 567788888888755 5677888999998766654 6666656677788888899999999999777654333
Q ss_pred --hhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 403 --VGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 403 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
..+|..++.--..-|+...|..+-++|..
T Consensus 500 q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 500 QLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred hhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 67899999888889999888877777764
No 220
>PRK15331 chaperone protein SicA; Provisional
Probab=97.29 E-value=0.014 Score=44.82 Aligned_cols=90 Identities=14% Similarity=0.007 Sum_probs=79.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCCh
Q 048090 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMW 419 (447)
Q Consensus 340 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 419 (447)
..-+...|++++|..+|+-+...+ |-+...|..|+.++-..+++++|...|..+..++++|+..+...+.+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 344568899999999999988876 667777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 048090 420 DEIGQLRELMKE 431 (447)
Q Consensus 420 ~~A~~~~~~m~~ 431 (447)
+.|+..|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999988876
No 221
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.29 E-value=0.0067 Score=48.59 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 048090 277 YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312 (447)
Q Consensus 277 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 312 (447)
+-+-|++++++|...|+.||..|+..+++.+.+.+.
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 345677777777777777777777777777766554
No 222
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.23 E-value=0.033 Score=42.94 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048090 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288 (447)
Q Consensus 228 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 288 (447)
..++..+...|++++|....+.+... .|.+...|..+|.+|...|+...|.+.|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~----dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALAL----DPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH----STT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34455555566666666666555443 4445555666666666666666666666554
No 223
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.19 Score=48.00 Aligned_cols=107 Identities=18% Similarity=0.197 Sum_probs=62.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048090 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307 (447)
Q Consensus 228 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 307 (447)
+--+.-+...|+-.+|.++-.+. .-||-..|-.-+.+++..+++++-+++-+.++ .+.-|..+..+|
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~F-------kipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDF-------KIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhc-------CCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 33444455566666666665532 34566666666677777777766655544432 134455566677
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 048090 308 SHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLIN 357 (447)
Q Consensus 308 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 357 (447)
.+.|+.++|.+++-+.. |.. -...+|.+.|++.+|.++.-
T Consensus 755 ~~~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhcccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHHH
Confidence 77777777776665542 111 35566667777766666543
No 224
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.20 E-value=0.022 Score=42.70 Aligned_cols=56 Identities=13% Similarity=0.166 Sum_probs=26.9
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048090 308 SHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRG 363 (447)
Q Consensus 308 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 363 (447)
.+.|++++|.+.|+.+..++...| ....-..|+.+|.+.+++++|...+++.++.+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 344555555555555544432222 13333444555555555555555555555444
No 225
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.17 E-value=0.011 Score=51.89 Aligned_cols=136 Identities=15% Similarity=0.040 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhhhh-cccCC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCCHH
Q 048090 226 MQSSLIEMYGKCGLVTKALQVFNLAGHR-LEGEI-NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM----NG-TKPDEV 298 (447)
Q Consensus 226 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~-~~p~~~ 298 (447)
.|..|.+.|.-.|+++.|+..-+.-... .+-|. ......+..+.+++.-.|+++.|.+.|+.... .| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555666666667777776655421111 11111 12234566667777777777777777665432 12 122344
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHh----cCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048090 299 AFVTVISACSHTGQVKLGIEYFEWMVHD----YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361 (447)
Q Consensus 299 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 361 (447)
...+|...|.-..+++.|+.++.+-... ....-....+.+|..+|...|..++|+.+.+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5556666666666677777666554321 01122345566666666666666666666555443
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.13 E-value=0.0017 Score=43.81 Aligned_cols=65 Identities=23% Similarity=0.303 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCchHhHHHHHHHHHhcCCccHHHHHHHHHhhh
Q 048090 334 EHYSCLVDLLCRAGELDKAWKLINEMLDR----GHG-SSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398 (447)
Q Consensus 334 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 398 (447)
.+|+.+...|...|++++|+..+++.++. |-. |.-..++..++.++...|++++|.+.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45667777777778888877777776533 100 112446777888888888888888888877653
No 227
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.12 E-value=0.17 Score=44.61 Aligned_cols=79 Identities=19% Similarity=0.156 Sum_probs=36.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC
Q 048090 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348 (447)
Q Consensus 269 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 348 (447)
+.-+...|+...|.++-.+.. .|+..-|..-+.+++..++|++-.++-. . +-++.-|..++.+|.+.|+
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~----s---kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAK----S---KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHh----C---CCCCCChHHHHHHHHHCCC
Confidence 344444455444444443331 3445555555555555555544433211 0 1233445555555555555
Q ss_pred HHHHHHHHHH
Q 048090 349 LDKAWKLINE 358 (447)
Q Consensus 349 ~~~A~~~~~~ 358 (447)
..+|..+..+
T Consensus 253 ~~eA~~yI~k 262 (319)
T PF04840_consen 253 KKEASKYIPK 262 (319)
T ss_pred HHHHHHHHHh
Confidence 5555555444
No 228
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.024 Score=48.39 Aligned_cols=159 Identities=16% Similarity=0.026 Sum_probs=106.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHH----HHHHHHcCCH
Q 048090 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL----VDLLCRAGEL 349 (447)
Q Consensus 274 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~ 349 (447)
..|++.+|-..++++.+. .+.|...+...=.+|...|+.......++++... ..|+...|..+ .-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 457777777777777765 3446666666667788888888888888877653 35555444333 2334578888
Q ss_pred HHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCC----chhHHHHHHHHHHhcCChHHHHHH
Q 048090 350 DKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH----NVGIYVMLSNLYAKFCMWDEIGQL 425 (447)
Q Consensus 350 ~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~ 425 (447)
++|++..++..+.+ |.|.-+..++...+...|++.++.++..+-...-.. -..-|-..+..+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 88888888888776 777777778888888888888888887765442211 112244445567777888888888
Q ss_pred HHHHHHcCCCCC
Q 048090 426 RELMKEKGLKKD 437 (447)
Q Consensus 426 ~~~m~~~~~~p~ 437 (447)
|++-.-.....|
T Consensus 270 yD~ei~k~l~k~ 281 (491)
T KOG2610|consen 270 YDREIWKRLEKD 281 (491)
T ss_pred HHHHHHHHhhcc
Confidence 876544333333
No 229
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.10 E-value=0.19 Score=45.05 Aligned_cols=362 Identities=11% Similarity=0.035 Sum_probs=192.0
Q ss_pred HHHhhhhhhhhhcccccCCcchHHHhhccCCCCC-CccHHHHHHHH--HhCCChhhHHHHHHHHHhc--CCCC-------
Q 048090 17 IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRN-PLPFNVVISDF--CRNGSPLYALKTFSFMHVH--GIFL------- 84 (447)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~l~~~~--~~~~~~~~a~~~~~~m~~~--~~~p------- 84 (447)
....+.++++|-... ++.....+..+.+.. ...|-.|..++ -+.+.+.+|++.+....++ +..|
T Consensus 46 Evl~grilnAffl~n----ld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni 121 (549)
T PF07079_consen 46 EVLGGRILNAFFLNN----LDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNI 121 (549)
T ss_pred HHHhhHHHHHHHHhh----HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhH
Confidence 456677888887654 666666555554322 34566666554 3578899999988877664 3222
Q ss_pred -----chhhHHHHHHHhccCCchhHHHHHHHHHHHcCCC----CchhhHHHHHHHHHccC--------C-------hhhH
Q 048090 85 -----DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL----SSVFVGSALIDLYAKLL--------L-------IHDA 140 (447)
Q Consensus 85 -----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g--------~-------~~~a 140 (447)
|-..=+..++++...|++.+++.+++++...=++ -+..+|+.++-.+++.= . ++.+
T Consensus 122 ~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemi 201 (549)
T PF07079_consen 122 QQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMI 201 (549)
T ss_pred HHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHH
Confidence 1222355667788999999999999988765433 67778877554444321 1 1111
Q ss_pred HHHhccCCC----------Cc----------------------------------hhhHHHHHHHHHh--cCCHHHHHHH
Q 048090 141 ELMFDEIPV----------KN----------------------------------SVCANALLSGYCE--AKLWAGGLEL 174 (447)
Q Consensus 141 ~~~~~~~~~----------~~----------------------------------~~~~~~l~~~~~~--~~~~~~a~~~ 174 (447)
.-...+|.. |. ..-|+.++..... ..+.+++..+
T Consensus 202 lfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ 281 (549)
T PF07079_consen 202 LFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHF 281 (549)
T ss_pred HHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHH
Confidence 111111110 00 0012222222111 0144444444
Q ss_pred HHhhhhcCCCC----cHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHH-------HHHHHHh-c---CC
Q 048090 175 VRLMPALGLDY----DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS-------LIEMYGK-C---GL 239 (447)
Q Consensus 175 ~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~-~---g~ 239 (447)
-+.+....+.+ -..+|..++....+.++...|.+.+.-+...+ |+...... +.+..+. - -+
T Consensus 282 ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld----p~~svs~Kllls~~~lq~Iv~~DD~~~Tk 357 (549)
T PF07079_consen 282 CEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD----PRISVSEKLLLSPKVLQDIVCEDDESYTK 357 (549)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC----CcchhhhhhhcCHHHHHHHHhcchHHHHH
Confidence 44433222111 23467777788888888888888877665543 33322221 1222221 1 11
Q ss_pred hHHHHHHHHhhhhhcccCCCcc--hhhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCC-CHHH----HHHHHHHHhc--
Q 048090 240 VTKALQVFNLAGHRLEGEINKD--VVLWTSMLGVYGRNGY-FKEVIKLYEAMLMNGTKP-DEVA----FVTVISACSH-- 309 (447)
Q Consensus 240 ~~~A~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~-~~~a~~~~~~m~~~~~~p-~~~~----~~~ll~~~~~-- 309 (447)
..+=+.+++.+.. ..+..- +...-.-..-+-+.|. -++|+++++...+- .| |... +..+=.+|..
T Consensus 358 lr~yL~lwe~~qs---~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaL 432 (549)
T PF07079_consen 358 LRDYLNLWEEIQS---YDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQAL 432 (549)
T ss_pred HHHHHHHHHHHHh---hcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHH
Confidence 2222233332211 111111 2222223445556665 77888888888763 33 3222 2222223332
Q ss_pred -cCcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHH--HHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhc
Q 048090 310 -TGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDL--LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382 (447)
Q Consensus 310 -~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 382 (447)
...+.+-..+-+-+ ++-|+.|- ...-|.|.++ +...|++.++.-.-.-+.+.. | ++.+|..++.+....
T Consensus 433 s~~~~~rLlkLe~fi-~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~ia--P-S~~~~RLlGl~l~e~ 508 (549)
T PF07079_consen 433 SMHAIPRLLKLEDFI-TEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIA--P-SPQAYRLLGLCLMEN 508 (549)
T ss_pred hhhhHHHHHHHHHHH-HhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--C-cHHHHHHHHHHHHHH
Confidence 23344444444433 33377763 3334444443 456788888887766666553 6 777788888888888
Q ss_pred CCccHHHHHHHHH
Q 048090 383 GKFELGKLAAQKA 395 (447)
Q Consensus 383 g~~~~a~~~~~~~ 395 (447)
.++++|..++.+.
T Consensus 509 k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 509 KRYQEAWEYLQKL 521 (549)
T ss_pred hhHHHHHHHHHhC
Confidence 8888888888764
No 230
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.10 E-value=0.17 Score=44.40 Aligned_cols=282 Identities=13% Similarity=0.029 Sum_probs=168.2
Q ss_pred cCCchhHHHHHHHHHHHcCCCCchhhHHHHHHH--HHccCChhhHHHHhccCCCCchhh----HHHHHHHHHhcCCHHHH
Q 048090 98 SVKDARFGKQVQAHVTKSGWLSSVFVGSALIDL--YAKLLLIHDAELMFDEIPVKNSVC----ANALLSGYCEAKLWAGG 171 (447)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a 171 (447)
-.||-..|.++-.+..+. +..|....-.++.+ -.-.|+.+.|.+-|+.|.. |+.+ ...|.-.-.+.|+.+.|
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHH
Confidence 346777776665544321 23344433334433 2345888888888888874 2222 22233333467888888
Q ss_pred HHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhH--HHHHHHHH---HhcCChHHHHHH
Q 048090 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM--QSSLIEMY---GKCGLVTKALQV 246 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~l~~~~---~~~g~~~~A~~~ 246 (447)
.++-++.-..- +--.......+...+..|+|+.|+++++.-.... -+.++..- -..|+.+- .-.-+...|...
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~-vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAK-VIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH-hhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 87777665542 2234466677888888899999998888766652 23333321 11222211 112345555554
Q ss_pred HHhhhhhcccCCCcchhh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 048090 247 FNLAGHRLEGEINKDVVL-WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325 (447)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 325 (447)
-.+..+ ..|+... --.-..++.+.|+..++-.+++.+=+....|+. ... ....+.|+. +..-+++..+
T Consensus 252 A~~a~K-----L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~l--Y~~ar~gdt--a~dRlkRa~~ 320 (531)
T COG3898 252 ALEANK-----LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--ALL--YVRARSGDT--ALDRLKRAKK 320 (531)
T ss_pred HHHHhh-----cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HHH--HHHhcCCCc--HHHHHHHHHH
Confidence 443323 4555433 333456788999999999999999876555543 222 223455553 3333444433
Q ss_pred hcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHh-cCCccHHHHHHHHHhh
Q 048090 326 DYKLEPG-PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD-CGKFELGKLAAQKALE 397 (447)
Q Consensus 326 ~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~ 397 (447)
-..++|| ......+.++....|++..|..--+...... | ...+|..|...-.. .||-.++...+-+.++
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~--p-res~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA--P-RESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC--c-hhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 3355665 6666777788888999998888777776654 5 44457777766554 4899999999988877
No 231
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0038 Score=54.66 Aligned_cols=66 Identities=17% Similarity=0.103 Sum_probs=61.8
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC
Q 048090 371 MWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438 (447)
Q Consensus 371 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 438 (447)
.+..+..++.+.+++..|++...++++.+|+|......-+.+|...|+++.|+..|+++.+ +.|+-
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~N 324 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSN 324 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCc
Confidence 4888999999999999999999999999999999999999999999999999999999987 56653
No 232
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.12 Score=42.21 Aligned_cols=85 Identities=11% Similarity=0.003 Sum_probs=45.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh----CCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhh----CCCchhHHHHHH
Q 048090 339 LVDLLCRAGELDKAWKLINEMLD----RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL----DPHNVGIYVMLS 410 (447)
Q Consensus 339 l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~l~ 410 (447)
..+.+.+..++++|-..+.+-.. ..-.++.-..|...+-.+.-..++..|..+++...+. .|.+..+...|+
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 33445555666655554443211 1111223334555555666666777777777765443 255666777777
Q ss_pred HHHHhcCChHHHHH
Q 048090 411 NLYAKFCMWDEIGQ 424 (447)
Q Consensus 411 ~~~~~~g~~~~A~~ 424 (447)
.+| ..|+.+++..
T Consensus 236 ~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 236 TAY-DEGDIEEIKK 248 (308)
T ss_pred HHh-ccCCHHHHHH
Confidence 655 5566665543
No 233
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.06 E-value=0.21 Score=44.56 Aligned_cols=167 Identities=14% Similarity=0.049 Sum_probs=106.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHhcCCCCChhh
Q 048090 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG---TKPDEVAFVTVISACSH---TGQVKLGIEYFEWMVHDYKLEPGPEH 335 (447)
Q Consensus 262 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~ 335 (447)
..+.-.++-+|....+++..+++.+.+...- +.-....-....-++.+ .|+.++|.+++..+... .-.+++.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~ 219 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDT 219 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHH
Confidence 3344456667999999999999999998741 11122222234445566 89999999999996555 45678888
Q ss_pred HHHHHHHHH----H-----cCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCC-ccHHHHHHHHH------h-hh
Q 048090 336 YSCLVDLLC----R-----AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK-FELGKLAAQKA------L-EL 398 (447)
Q Consensus 336 ~~~l~~~~~----~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~------~-~~ 398 (447)
|..+.+.|- . ....++|...|.+.-+.. |+...-.|... .+...|. .+...++-+-. + +.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~At-LL~~~g~~~~~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAAT-LLMLAGHDFETSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHH-HHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence 888887663 2 224788999999887665 43333233332 2233332 33222211111 1 11
Q ss_pred C----CCchhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 399 D----PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 399 ~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
+ -.+--.+..++.+..-.|++++|.+..++|.+.
T Consensus 297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1 123445677888899999999999999999875
No 234
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.05 E-value=0.0099 Score=44.03 Aligned_cols=53 Identities=9% Similarity=0.279 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 048090 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344 (447)
Q Consensus 292 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 344 (447)
...|+..+..+++.+|+..+++..|.++.+...+.++++.+..+|..|++-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 35677888888888888888888888888888888777777777877776443
No 235
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.99 E-value=0.013 Score=48.85 Aligned_cols=106 Identities=12% Similarity=0.149 Sum_probs=63.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCchHhHHHHH
Q 048090 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRG-HGSSSVSMWGALL 376 (447)
Q Consensus 299 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~~l~ 376 (447)
.|+.-+.. .+.|++..|...|...++.+.-.+ ....+-.|..++...|++++|..+|..+.+.. -.|..+.++..|+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555543 345567777777777766421111 24445566677777777777777777665543 1133334566666
Q ss_pred HHHHhcCCccHHHHHHHHHhhhCCCchhH
Q 048090 377 SACHDCGKFELGKLAAQKALELDPHNVGI 405 (447)
Q Consensus 377 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 405 (447)
.+..+.|+.++|...|+++.+.-|.+..+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 67777777777777777777777765543
No 236
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.94 E-value=0.071 Score=46.18 Aligned_cols=129 Identities=12% Similarity=0.047 Sum_probs=75.9
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcCC--CC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCch-----
Q 048090 301 VTVISACSHTGQVKLGIEYFEWMVHDYKL--EP--GPEHYSCLVDLLCRAGELDKAWKLINEMLDR--GHGSSSV----- 369 (447)
Q Consensus 301 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~----- 369 (447)
.++..++...+.++++++.|+...+--.- .| ...++-.|...|.+..++++|.-+..+..+. .+...+.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 34555666666777777777766532111 11 2455677777777777777777666554322 1111111
Q ss_pred -HhHHHHHHHHHhcCCccHHHHHHHHHhhhC--CC----chhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048090 370 -SMWGALLSACHDCGKFELGKLAAQKALELD--PH----NVGIYVMLSNLYAKFCMWDEIGQLRELM 429 (447)
Q Consensus 370 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m 429 (447)
.+...+..++...|....|.+..+++.++. .. .......+++.|...|+.+.|+.-|+..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 124455667777788877887777776532 22 3344556677777778777777665543
No 237
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.87 E-value=0.11 Score=45.07 Aligned_cols=232 Identities=13% Similarity=0.026 Sum_probs=124.6
Q ss_pred hcCCHHHHHHHHHhhhhc--CCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCC---ChhHHHHHHHHHHhcC
Q 048090 164 EAKLWAGGLELVRLMPAL--GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN---DVFMQSSLIEMYGKCG 238 (447)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g 238 (447)
...+.++|+..+.+-... .....-.+|..+..+.++.|.++++...--..+........ --..|..+..++-+..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544332 00112234555566666666666655432222211000111 1223444555555555
Q ss_pred ChHHHHHHHHhhhhhcccCCCc---chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHhcc
Q 048090 239 LVTKALQVFNLAGHRLEGEINK---DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG-----TKPDEVAFVTVISACSHT 310 (447)
Q Consensus 239 ~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~ 310 (447)
++.+++.+-+.-... .|..| .-....++..++...+.++++++.|+...+.- .......+..|-..|...
T Consensus 98 ~f~kt~~y~k~~l~l--pgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGL--PGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HhhhHHHHHHHHhcC--CCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 555555554422221 11111 11234456677777788888888888775431 112335677777788888
Q ss_pred CcHHHHHHHHHHHHH---hcCCCCChhhHHH-----HHHHHHHcCCHHHHHHHHHHHH----hCCCCCCchHhHHHHHHH
Q 048090 311 GQVKLGIEYFEWMVH---DYKLEPGPEHYSC-----LVDLLCRAGELDKAWKLINEML----DRGHGSSSVSMWGALLSA 378 (447)
Q Consensus 311 ~~~~~a~~~~~~~~~---~~~~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~----~~~~~p~~~~~~~~l~~~ 378 (447)
.++++|.-+..+..+ ..++..-..-|.. +.-++...|++-.|.+..++.. ..|-.|........+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 888888766655432 2222221222222 2334667788777777777754 344444444456677888
Q ss_pred HHhcCCccHHHHHHHHHhh
Q 048090 379 CHDCGKFELGKLAAQKALE 397 (447)
Q Consensus 379 ~~~~g~~~~a~~~~~~~~~ 397 (447)
|...|+.+.|..-|+.+..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 8888988888887777655
No 238
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.86 E-value=0.21 Score=41.48 Aligned_cols=65 Identities=14% Similarity=-0.134 Sum_probs=42.2
Q ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhh
Q 048090 188 FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253 (447)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 253 (447)
..|+..+.. .+.|++++|.+.|+.+....|.-+-...+...++.++.+.++++.|+..+++....
T Consensus 36 ~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 36 ELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 344443333 35677777777777777765555555566666777777777777777777755444
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.85 E-value=0.13 Score=48.14 Aligned_cols=164 Identities=12% Similarity=0.044 Sum_probs=100.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH-----HHHHHHHHHHhc----cCcHHHHHHHHHHHHHhcCCCCChh
Q 048090 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNG-TKPDE-----VAFVTVISACSH----TGQVKLGIEYFEWMVHDYKLEPGPE 334 (447)
Q Consensus 265 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 334 (447)
...+++...-.|+-+.+++.+.+..+.+ +.-.. .+|..++..++. ....+.|.++++.+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3445555666677777777777665532 22111 234444444433 34577788888888765 46655
Q ss_pred hHHHH-HHHHHHcCCHHHHHHHHHHHHhC--CCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHH
Q 048090 335 HYSCL-VDLLCRAGELDKAWKLINEMLDR--GHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411 (447)
Q Consensus 335 ~~~~l-~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 411 (447)
.|... .+.+...|++++|.+.|++.... ..+.-....+.-++..+.-..++++|...+.++.+...-+..+|..+.-
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 55433 45566778888888888876532 1112222345667777888888888888888888866555555544433
Q ss_pred -HHHhcCCh-------HHHHHHHHHHHH
Q 048090 412 -LYAKFCMW-------DEIGQLRELMKE 431 (447)
Q Consensus 412 -~~~~~g~~-------~~A~~~~~~m~~ 431 (447)
++...|+. ++|.+++.+...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 44567777 777777776644
No 240
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.85 E-value=0.0043 Score=36.23 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHH
Q 048090 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377 (447)
Q Consensus 334 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~ 377 (447)
.++..+...|.+.|++++|.++++++++.. |++..++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD--PDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHHHHHHhhh
Confidence 356778888999999999999999999887 888887776653
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.25 Score=41.85 Aligned_cols=143 Identities=13% Similarity=0.075 Sum_probs=64.1
Q ss_pred HHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH
Q 048090 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313 (447)
Q Consensus 234 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 313 (447)
....|++.+|...|+..... .+.+...-..++.+|...|+.+.|..++..+-..--.........-|..+.+....
T Consensus 144 ~~~~e~~~~a~~~~~~al~~----~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA----APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhccchhhHHHHHHHHHHh----CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34445555555555544333 22223344445555555555555555555543221111111111112222222222
Q ss_pred HHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCC
Q 048090 314 KLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384 (447)
Q Consensus 314 ~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 384 (447)
.+...+-.+.-. .| |...-..+...+...|+.++|.+.+-.+++.+....+...-..|+..+.-.|.
T Consensus 220 ~~~~~l~~~~aa----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 220 PEIQDLQRRLAA----DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CCHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 222233233321 23 45555556666666677777766666666554444444445555555554443
No 242
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.77 E-value=0.045 Score=43.18 Aligned_cols=102 Identities=14% Similarity=0.086 Sum_probs=79.4
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHh
Q 048090 307 CSHTGQVKLGIEYFEWMVHDYKLEPG-----PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381 (447)
Q Consensus 307 ~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 381 (447)
+...|++++|..-|...+.. +++. ...|..-..++.+.+.++.|+.-..+.++.+ |....+...-..+|.+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 56788899999888888864 2332 2345555567788999999999999999887 7777767777788999
Q ss_pred cCCccHHHHHHHHHhhhCCCchhHHHHHHHH
Q 048090 382 CGKFELGKLAAQKALELDPHNVGIYVMLSNL 412 (447)
Q Consensus 382 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 412 (447)
...+++|..-|+++++.+|....+....++.
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 9999999999999999999877665555543
No 243
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.71 E-value=0.29 Score=40.95 Aligned_cols=86 Identities=24% Similarity=0.221 Sum_probs=37.4
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCC-chHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHH
Q 048090 343 LCRAGELDKAWKLINEMLDRGHGSS-SVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421 (447)
Q Consensus 343 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 421 (447)
+...++.+.+...+.+..... +. ....+..+...+...++++.+...+..+....|.....+..+...+...+.+++
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (291)
T COG0457 177 LEALGRYEEALELLEKALKLN--PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEE 254 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhC--cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHH
Confidence 334444444554444444433 22 233344444444444444555555555444444433333333333334444444
Q ss_pred HHHHHHHHH
Q 048090 422 IGQLRELMK 430 (447)
Q Consensus 422 A~~~~~~m~ 430 (447)
+...+.+..
T Consensus 255 ~~~~~~~~~ 263 (291)
T COG0457 255 ALEALEKAL 263 (291)
T ss_pred HHHHHHHHH
Confidence 444444433
No 244
>PRK11906 transcriptional regulator; Provisional
Probab=96.70 E-value=0.21 Score=45.32 Aligned_cols=119 Identities=11% Similarity=0.050 Sum_probs=70.3
Q ss_pred hHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 048090 240 VTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN---------GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHT 310 (447)
Q Consensus 240 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 310 (447)
.+.|..+|.+...+.. ..|.....|..+..++... ....+|.++.++..+.+ .-|+.....+..+....
T Consensus 274 ~~~Al~lf~ra~~~~~-ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSD-IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhccc-CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4566667775542100 1222345555555544322 22345566666666654 33666666666666667
Q ss_pred CcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048090 311 GQVKLGIEYFEWMVHDYKLEPG-PEHYSCLVDLLCRAGELDKAWKLINEMLDRG 363 (447)
Q Consensus 311 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 363 (447)
++++.|...|++.. .+.|| ..+|......+.-.|+.++|.+.+++..+..
T Consensus 352 ~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 352 GQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred cchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 77888888887776 44665 4455555555666788888888888776665
No 245
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.70 E-value=0.15 Score=37.42 Aligned_cols=140 Identities=15% Similarity=0.124 Sum_probs=82.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHH
Q 048090 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352 (447)
Q Consensus 273 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 352 (447)
.-.|..++..++..+.... .+..-++.+|.-....-+=+-..++++.+-+-+.+.|-. -...++.+|...|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNK---- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT-----
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcc----
Confidence 3457778888888877663 255566666655555555555666666664433222211 11233444444332
Q ss_pred HHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 353 ~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
.......-+.+...+|+-+.-.+++....+.+.+++.+...++.+|.+.|+..++-+++.+..+.
T Consensus 85 ---------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 85 ---------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp -----------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred ---------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 12225556677778888888888888887766778889999999999999999999999999888
Q ss_pred CCC
Q 048090 433 GLK 435 (447)
Q Consensus 433 ~~~ 435 (447)
|++
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 864
No 246
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.64 E-value=0.48 Score=42.61 Aligned_cols=373 Identities=10% Similarity=-0.034 Sum_probs=201.9
Q ss_pred HhhccCC--CCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCC
Q 048090 41 NCLKFLN--PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118 (447)
Q Consensus 41 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 118 (447)
++=+++. |.|+.+|-.|+.-+...+..++..+++++|..- .+--...|..-+.+-...+++...+.+|.+.+...+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l- 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL- 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-
Confidence 4444443 467889999999999999999999999999764 223345677777777777899999999999887644
Q ss_pred CchhhHHHHHHHHHccCC---------hhhHHHHhccC--CCC-chhhHHHHHHHHH---------hcCCHHHHHHHHHh
Q 048090 119 SSVFVGSALIDLYAKLLL---------IHDAELMFDEI--PVK-NSVCANALLSGYC---------EAKLWAGGLELVRL 177 (447)
Q Consensus 119 ~~~~~~~~l~~~~~~~g~---------~~~a~~~~~~~--~~~-~~~~~~~l~~~~~---------~~~~~~~a~~~~~~ 177 (447)
+...|...++...+.+. +-+|.++.-.. .+| ....|+..+..+- .+.+.+...+.|.+
T Consensus 108 -~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~r 186 (660)
T COG5107 108 -NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMR 186 (660)
T ss_pred -cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 45566666665444431 12232222111 122 3344554443221 22344555566666
Q ss_pred hhhcCCCCcHhhH------HHHHHH-----Hh--cCCcHHHHHHHHHHHHHhhhcCCC----ChhHHHHHHHHHHhcCCh
Q 048090 178 MPALGLDYDHFTL------SALLRA-----CA--GLSAAEFGRQVHAYMIRKCCNLGN----DVFMQSSLIEMYGKCGLV 240 (447)
Q Consensus 178 ~~~~~~~~~~~~~------~~l~~~-----~~--~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~ 240 (447)
+...-+..-...| ..=++- +. ...-+-.|...+++....-.|+.. +..+++...+.
T Consensus 187 al~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~------- 259 (660)
T COG5107 187 ALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAART------- 259 (660)
T ss_pred HHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccc-------
Confidence 6543111101111 111111 10 112233555555555443222221 11122221110
Q ss_pred HHHHHHHHhhhhhcccCC----------------------CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 048090 241 TKALQVFNLAGHRLEGEI----------------------NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298 (447)
Q Consensus 241 ~~A~~~~~~~~~~~~~~~----------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 298 (447)
... ..++.++-..+.+. +-....|----..+...++-+.|+...+.-.. ..|...
T Consensus 260 s~S-~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~--~spsL~ 336 (660)
T COG5107 260 SDS-NWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE--MSPSLT 336 (660)
T ss_pred ccc-hhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc--CCCchh
Confidence 000 00111000001111 11112222222233445666677766655433 233311
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHh-------------cCC---------------CCChhhHHHHHHHHHHcCCHH
Q 048090 299 AFVTVISACSHTGQVKLGIEYFEWMVHD-------------YKL---------------EPGPEHYSCLVDLLCRAGELD 350 (447)
Q Consensus 299 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------------~~~---------------~~~~~~~~~l~~~~~~~g~~~ 350 (447)
. .+-..+.-..+-+.....|++..+. .+. ..-...|..++..-.+..-++
T Consensus 337 ~--~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~ 414 (660)
T COG5107 337 M--FLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLE 414 (660)
T ss_pred e--eHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHH
Confidence 1 1111222222222222222221110 001 111334566777777778899
Q ss_pred HHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048090 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELM 429 (447)
Q Consensus 351 ~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 429 (447)
.|..+|-++.+.++...++.++++++..++ .|+...|..+|+-.+...|+++..-.-.+..+.+.++-+.|..+|+..
T Consensus 415 aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFets 492 (660)
T COG5107 415 AARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETS 492 (660)
T ss_pred HHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 999999999999977778888888888765 478888999999999999998887778888888999988898888843
No 247
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.55 E-value=0.32 Score=45.73 Aligned_cols=80 Identities=11% Similarity=0.115 Sum_probs=47.3
Q ss_pred HHHHHHHHHhCCCh--hhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 048090 54 FNVVISDFCRNGSP--LYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLY 131 (447)
Q Consensus 54 ~~~l~~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (447)
++..=.+|.+-++. -+.+.-++++++.|-.|+.... ...|+-.|.+.+|.++|.+- |.. +..+..|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmy 668 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRS---GHE------NRALEMY 668 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHH
Confidence 45555666665543 3445556777888877886543 34566678888888877643 221 3344555
Q ss_pred HccCChhhHHHHhc
Q 048090 132 AKLLLIHDAELMFD 145 (447)
Q Consensus 132 ~~~g~~~~a~~~~~ 145 (447)
...+.++.|.+++.
T Consensus 669 TDlRMFD~aQE~~~ 682 (1081)
T KOG1538|consen 669 TDLRMFDYAQEFLG 682 (1081)
T ss_pred HHHHHHHHHHHHhh
Confidence 55555555555543
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.54 E-value=0.26 Score=46.30 Aligned_cols=88 Identities=10% Similarity=0.024 Sum_probs=40.4
Q ss_pred CcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHH
Q 048090 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280 (447)
Q Consensus 201 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 280 (447)
.+.+.+.++++.+.+. .|......-.-...+...|++++|++.|+........-.......+--+.-++.-..++++
T Consensus 247 ~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 3455566666666554 2222222222334455556666666666643221111111222233334444555556666
Q ss_pred HHHHHHHHHhC
Q 048090 281 VIKLYEAMLMN 291 (447)
Q Consensus 281 a~~~~~~m~~~ 291 (447)
|.+.|..+.+.
T Consensus 324 A~~~f~~L~~~ 334 (468)
T PF10300_consen 324 AAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHhc
Confidence 66666666553
No 249
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.53 E-value=0.38 Score=40.04 Aligned_cols=176 Identities=13% Similarity=0.074 Sum_probs=94.3
Q ss_pred HHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-
Q 048090 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH- 309 (447)
Q Consensus 231 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~- 309 (447)
+..-.+.|++++|.+.|+.+... ....+-...+--.++-++-+.++++.|...+++...........-|...|.+++.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~-~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~ 119 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSR-HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYF 119 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHc-CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Confidence 33445778899999999877543 1122223444555666777888899999888888776433333445555554442
Q ss_pred ------cCc---HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHH
Q 048090 310 ------TGQ---VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380 (447)
Q Consensus 310 ------~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 380 (447)
..+ ...|..-|++++.+ -||..- .. +...-+..+...+.. -=..++..|.
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~r---yPnS~Y-a~---------dA~~~i~~~~d~LA~--------~Em~IaryY~ 178 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQR---YPNSRY-AP---------DAKARIVKLNDALAG--------HEMAIARYYL 178 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHH---CCCCcc-hh---------hHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 122 23344445555544 233210 00 001111111111110 0124566677
Q ss_pred hcCCccHHHHHHHHHhhhCCC---chhHHHHHHHHHHhcCChHHHHHHHHH
Q 048090 381 DCGKFELGKLAAQKALELDPH---NVGIYVMLSNLYAKFCMWDEIGQLREL 428 (447)
Q Consensus 381 ~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 428 (447)
+.|.+..|..-++++++.-|. ....+..+..+|...|-.++|...-+-
T Consensus 179 kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 179 KRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred HhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 777777777777777765444 234455666677777777776655443
No 250
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.52 E-value=0.13 Score=43.08 Aligned_cols=104 Identities=19% Similarity=0.264 Sum_probs=63.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHH
Q 048090 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK--PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG-PEHYSCLV 340 (447)
Q Consensus 264 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~ 340 (447)
.|+.-+.. .+.|++..|...|...++.... -....+..|..++...|+++.|..+|..+.++++-.|. +..+..|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45554443 3455677777777777665321 12334556677777777777777777777666444443 45666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCchH
Q 048090 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVS 370 (447)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 370 (447)
.+..+.|+.++|..+|++..+.- |....
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y--P~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY--PGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC--CCCHH
Confidence 66777777777777777777664 54443
No 251
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.43 Score=41.19 Aligned_cols=118 Identities=13% Similarity=-0.059 Sum_probs=57.5
Q ss_pred cCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHh-hhcCCCChhHHHHHHHHHHhcCChHHH
Q 048090 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK-CCNLGNDVFMQSSLIEMYGKCGLVTKA 243 (447)
Q Consensus 165 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A 243 (447)
.|...+|-..++++.+. .+.|...+...-.+|.-.|+.+.....++++... .++++-...+...+.-++..+|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 45555555555555543 2344445555555555566665555555555543 111111122223333344455666666
Q ss_pred HHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048090 244 LQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287 (447)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 287 (447)
++.-++..+. .+.|.-+..+....+...|++.++.+++.+
T Consensus 195 Ek~A~ralqi----N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQI----NRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccC----CCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 6555544333 233334444455555555666665555544
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.36 Score=40.98 Aligned_cols=150 Identities=15% Similarity=0.083 Sum_probs=104.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC
Q 048090 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348 (447)
Q Consensus 269 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 348 (447)
.......|++.+|..+|+........ +......++.++...|+.+.|..++..+..+ --.........-+..+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhc
Confidence 34556788999999999888775322 3456667888889999999999999887533 111111222233455556666
Q ss_pred HHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhC--CCchhHHHHHHHHHHhcCChHHHH
Q 048090 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD--PHNVGIYVMLSNLYAKFCMWDEIG 423 (447)
Q Consensus 349 ~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 423 (447)
..+...+-++.-.. |+|...-..+...+...|+.+.|.+.+-.+++.+ -.+...-..|+..+.-.|.-+.+.
T Consensus 219 ~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 219 TPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred CCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence 66666655555554 8888888889999999999999988887777765 446777788888887777555443
No 253
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.47 E-value=0.42 Score=39.94 Aligned_cols=227 Identities=19% Similarity=0.085 Sum_probs=141.5
Q ss_pred CCHHHHHHHHHhhhhcCCC-CcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHH
Q 048090 166 KLWAGGLELVRLMPALGLD-YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244 (447)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 244 (447)
+....+...+......... .....+......+...+.+..+...+...... .........+......+...+++..+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 3444444444444433211 12345555556666667777777666666542 012334555666666667777777777
Q ss_pred HHHHhhhhhcccCCCcchhhHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 048090 245 QVFNLAGHRLEGEINKDVVLWTSMLG-VYGRNGYFKEVIKLYEAMLMNGT--KPDEVAFVTVISACSHTGQVKLGIEYFE 321 (447)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 321 (447)
..+...... .+.+......... .+...|+++.+...+.+...... ......+......+...++.+.+...+.
T Consensus 116 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 116 ELLEKALAL----DPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred HHHHHHHcC----CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 777755432 1111222233333 67788888888888888755221 1233344444444667788899998888
Q ss_pred HHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCC
Q 048090 322 WMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400 (447)
Q Consensus 322 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 400 (447)
..... ... ....+..+...+...++++.|...+....... |.....+..+...+...+..+.+...+.+.....|
T Consensus 192 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 192 KALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred HHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 88754 233 36677788888888889999999999888775 44344456666666677778999999999888887
Q ss_pred C
Q 048090 401 H 401 (447)
Q Consensus 401 ~ 401 (447)
.
T Consensus 268 ~ 268 (291)
T COG0457 268 D 268 (291)
T ss_pred c
Confidence 6
No 254
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.44 E-value=0.27 Score=45.53 Aligned_cols=158 Identities=11% Similarity=-0.078 Sum_probs=108.8
Q ss_pred HHHHhCCChhhHHHHHH--HHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCC
Q 048090 59 SDFCRNGSPLYALKTFS--FMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136 (447)
Q Consensus 59 ~~~~~~~~~~~a~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 136 (447)
....-+++++.+.+..+ ++.. .+ +....+.+++.+.+.|-.+.|+++-.+ + ..-.+...++|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCC
Confidence 44566889999877775 2221 12 245578888889999999999886543 2 234566788999
Q ss_pred hhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 048090 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216 (447)
Q Consensus 137 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 216 (447)
++.|.++.+++. +...|..|.....+.|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.++.+.....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999999998887 567999999999999999999999998764 456666677788888888887776665
Q ss_pred hhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhh
Q 048090 217 CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLA 250 (447)
Q Consensus 217 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 250 (447)
| -++....++.-.|+.++..+++.+.
T Consensus 403 --~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 403 --G------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp --T-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred --c------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2 2455556667779999998888743
No 255
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.42 E-value=0.057 Score=40.04 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=43.6
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCC
Q 048090 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384 (447)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 384 (447)
...|+..+..+++.+|+..|++..|+++++...+.--.|-+..+|..|+.-+...-+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 567888999999999999999999999998876553345556678888776655443
No 256
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.42 E-value=0.55 Score=40.74 Aligned_cols=127 Identities=11% Similarity=-0.053 Sum_probs=56.1
Q ss_pred hcCCHHHHHHHHHhhhhcC--CCCcHh-----hHHHHHHHHhcCC-cHHHHHHHHHHHHHh----hh--cCCCC-----h
Q 048090 164 EAKLWAGGLELVRLMPALG--LDYDHF-----TLSALLRACAGLS-AAEFGRQVHAYMIRK----CC--NLGND-----V 224 (447)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~--~~~~~~-----~~~~l~~~~~~~~-~~~~a~~~~~~~~~~----~~--~~~~~-----~ 224 (447)
+.|+.+.|...+.+..... ..|+.. .+..+.......+ +++.|...+++..+. +. ...++ .
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4566666666666654422 122211 1111122223344 666666666655443 10 11112 1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048090 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291 (447)
Q Consensus 225 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 291 (447)
.+...++.+|...+..+...+..+.+.... +..+.....+-.-+..+.+.++.+.+.+.+.+|...
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~-~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLE-SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHH-HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 244555556666555443333222211111 112222334444445555566666666666666654
No 257
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.38 E-value=0.77 Score=42.07 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=63.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchH-hHHHHHH
Q 048090 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVS-MWGALLS 377 (447)
Q Consensus 299 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~~l~~ 377 (447)
+-..+..++-+.|+.++|++.++++.+.+....+......|+.++...+.+.++..++.+--+... |.+.. .|+..+-
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~YTaALL 339 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICYTAALL 339 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHHHHHHH
Confidence 334555666678888888888888876533222355677888888888888888888888654332 43333 2333332
Q ss_pred HHHhcCC---------------ccHHHHHHHHHhhhCCCc
Q 048090 378 ACHDCGK---------------FELGKLAAQKALELDPHN 402 (447)
Q Consensus 378 ~~~~~g~---------------~~~a~~~~~~~~~~~~~~ 402 (447)
-....++ -..|.+.+.++.+.+|.-
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 2222222 123557777887766543
No 258
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.38 E-value=0.78 Score=42.04 Aligned_cols=73 Identities=15% Similarity=0.141 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhC-CCchhH
Q 048090 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD-PHNVGI 405 (447)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~ 405 (447)
..+-..|..++.+.|+.++|.+.+++|.+..-.-+...+...|+.++...+.+.++..++.+.-+.. |.+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti 332 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATI 332 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHH
Confidence 3334567777889999999999999998765212355578899999999999999999999987654 554443
No 259
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.32 E-value=0.2 Score=37.71 Aligned_cols=92 Identities=17% Similarity=0.095 Sum_probs=67.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCC-CCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchh---HHHHHHHHHHh
Q 048090 340 VDLLCRAGELDKAWKLINEMLDRGH-GSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG---IYVMLSNLYAK 415 (447)
Q Consensus 340 ~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~ 415 (447)
.....+.|++++|.+.|+.+...-- .|-...+-..|+.+|.+.+++++|...+++.+++.|.++. ++...+.++.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 4456788999999999999987741 1223335678999999999999999999999999987543 34444444444
Q ss_pred cCC---------------hHHHHHHHHHHHH
Q 048090 416 FCM---------------WDEIGQLRELMKE 431 (447)
Q Consensus 416 ~g~---------------~~~A~~~~~~m~~ 431 (447)
... ...|..-|+++++
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 443 5667777777765
No 260
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.32 E-value=1.2 Score=43.62 Aligned_cols=315 Identities=4% Similarity=-0.140 Sum_probs=155.2
Q ss_pred HHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhH
Q 048090 61 FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140 (447)
Q Consensus 61 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 140 (447)
..+.|++..+..+...+....+. .-..|..+...+. ....++....+++-. +.+.....-..-+..+.+.++++..
T Consensus 43 a~~~g~~~~~~~~~~~l~d~pL~-~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~La~~~~w~~~ 118 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDYPLY-PYLEYRQLTQDLM-NQPAVQVTNFIRANP--TLPPARSLQSRFVNELARREDWRGL 118 (644)
T ss_pred HHHCCCHHHHHHHHHhccCCCcH-hHHHHHHHHhccc-cCCHHHHHHHHHHCC--CCchHHHHHHHHHHHHHHccCHHHH
Confidence 35677888877777766433221 1122333322211 223443333333211 1233333334455566778888888
Q ss_pred HHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcC
Q 048090 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220 (447)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 220 (447)
...+..- ..+.........+....|+.++|....+.+-..| ...+..+..++..+.+.|.+.... +++++...- .
T Consensus 119 ~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d-~w~R~~~al--~ 193 (644)
T PRK11619 119 LAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLA-YLERIRLAM--K 193 (644)
T ss_pred HHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHH-HHHHHHHHH--H
Confidence 8844333 4466666777888888999888877777765554 344566777777777555443322 222222210 0
Q ss_pred CCChhHHHHHHHHH-----------H-hcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHH--hcCCHHHHHHHHH
Q 048090 221 GNDVFMQSSLIEMY-----------G-KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG--RNGYFKEVIKLYE 286 (447)
Q Consensus 221 ~~~~~~~~~l~~~~-----------~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~ 286 (447)
..+...-..+...+ . -..++..+...+. ..+++...-...+-++. ...+.+.|..++.
T Consensus 194 ~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~--------~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~ 265 (644)
T PRK11619 194 AGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR--------TTGPTDFTRQMAAVAFASVARQDAENARLMIP 265 (644)
T ss_pred CCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh--------ccCCChhhHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 01111111111111 0 0111222222221 01122211111122222 2345577888887
Q ss_pred HHHhCC-CCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048090 287 AMLMNG-TKPDE--VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRG 363 (447)
Q Consensus 287 ~m~~~~-~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 363 (447)
...... ..+.. .+...+.......+..+++...++..... ..+......-++...+.++++.+...+..|....
T Consensus 266 ~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~ 342 (644)
T PRK11619 266 SLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGLNTWLARLPMEA 342 (644)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh
Confidence 764442 22222 22333333333332245566666654322 2344445555555667888888888887775433
Q ss_pred CCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 048090 364 HGSSSVSMWGALLSACHDCGKFELGKLAAQKALE 397 (447)
Q Consensus 364 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 397 (447)
.....-..=++.++...|+.++|...|+++..
T Consensus 343 --~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 343 --KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred --ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 12333344566776677888888888887643
No 261
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.29 E-value=0.045 Score=43.20 Aligned_cols=90 Identities=20% Similarity=0.226 Sum_probs=76.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCchH-----hHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHh
Q 048090 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVS-----MWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAK 415 (447)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (447)
.-+.+.|++++|..-|.+++... |+... .|..-..++.+.+.++.|..-..++++++|....+...-+.+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c--p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC--PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC--ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 34678999999999999998875 54332 355566788999999999999999999999999888888999999
Q ss_pred cCChHHHHHHHHHHHHc
Q 048090 416 FCMWDEIGQLRELMKEK 432 (447)
Q Consensus 416 ~g~~~~A~~~~~~m~~~ 432 (447)
..++++|++-|+++...
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 99999999999988763
No 262
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.27 E-value=0.84 Score=41.25 Aligned_cols=150 Identities=12% Similarity=0.064 Sum_probs=75.3
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC--hh
Q 048090 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP---DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG--PE 334 (447)
Q Consensus 260 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 334 (447)
....+|..++..+.+.|+++.|...+..+...+..+ ++.....-+...-..|+..+|...++..... .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 344566677777777777777777777766543111 2233333444555667777777777666652 11111 11
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhc------CCccHHHHHHHHHhhhCCCchhHHHH
Q 048090 335 HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC------GKFELGKLAAQKALELDPHNVGIYVM 408 (447)
Q Consensus 335 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~~~~~~~~~~ 408 (447)
....+...... ..+.....- ........-..++..++..+... +..+.+...|+++.+..|.....|..
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~ 297 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTN---LDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS 297 (352)
T ss_pred cHHHHhhcccc--ccccccccc---hhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence 11111110000 000000000 00000000111244444444444 77888888999999988888888888
Q ss_pred HHHHHHh
Q 048090 409 LSNLYAK 415 (447)
Q Consensus 409 l~~~~~~ 415 (447)
++..+.+
T Consensus 298 ~a~~~~~ 304 (352)
T PF02259_consen 298 WALFNDK 304 (352)
T ss_pred HHHHHHH
Confidence 7776654
No 263
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.23 E-value=0.083 Score=38.52 Aligned_cols=94 Identities=13% Similarity=-0.041 Sum_probs=62.1
Q ss_pred HHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhc
Q 048090 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275 (447)
Q Consensus 196 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 275 (447)
+++..|+++.|.+.|.+.+.. .+.....||.-.+++.-.|+.++|++=+++..+........--.+|..-...|...
T Consensus 52 alaE~g~Ld~AlE~F~qal~l---~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL---APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh---cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 456678888888888877775 44577788888888888888888887777655542221111222344444556677
Q ss_pred CCHHHHHHHHHHHHhCC
Q 048090 276 GYFKEVIKLYEAMLMNG 292 (447)
Q Consensus 276 g~~~~a~~~~~~m~~~~ 292 (447)
|+.+.|..-|+..-+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 77777777777776655
No 264
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.17 E-value=0.011 Score=32.03 Aligned_cols=31 Identities=35% Similarity=0.400 Sum_probs=20.7
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhhhCCC
Q 048090 371 MWGALLSACHDCGKFELGKLAAQKALELDPH 401 (447)
Q Consensus 371 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 401 (447)
+|..++.++...|++++|...++++++.+|.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4666677777777777777777777776664
No 265
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.08 E-value=0.015 Score=31.44 Aligned_cols=31 Identities=39% Similarity=0.463 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhhhCCC
Q 048090 371 MWGALLSACHDCGKFELGKLAAQKALELDPH 401 (447)
Q Consensus 371 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 401 (447)
+|..++.++...|++++|.+.+++++++.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3556666666666666666666666666664
No 266
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.03 E-value=0.9 Score=39.44 Aligned_cols=102 Identities=14% Similarity=0.016 Sum_probs=52.5
Q ss_pred hHHHHHHHHhcCCcHH---HHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhH
Q 048090 189 TLSALLRACAGLSAAE---FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265 (447)
Q Consensus 189 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 265 (447)
++..++.++...+..+ +|..+++.+... .+..+.++..-+..+.+.++.+.+.+++..|... ..-....+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e---~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~----~~~~e~~~ 158 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE---YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS----VDHSESNF 158 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh---CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh----cccccchH
Confidence 4455566666555443 455555555444 2223445555566666677777777777765442 22233445
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCH
Q 048090 266 TSMLGVYGR--NGYFKEVIKLYEAMLMNGTKPDE 297 (447)
Q Consensus 266 ~~l~~~~~~--~g~~~~a~~~~~~m~~~~~~p~~ 297 (447)
..++..+.. ......+...+..+....+.|..
T Consensus 159 ~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 159 DSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 544444421 12234555555555544444444
No 267
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.90 E-value=0.64 Score=43.10 Aligned_cols=131 Identities=15% Similarity=0.086 Sum_probs=61.3
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHH
Q 048090 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268 (447)
Q Consensus 189 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 268 (447)
-...++..+.+.|-.+.|.++...-..+ .....+.|+++.|.++.+ ...+...|..|
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~r--------------FeLAl~lg~L~~A~~~a~---------~~~~~~~W~~L 353 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDHR--------------FELALQLGNLDIALEIAK---------ELDDPEKWKQL 353 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHHH--------------HHHHHHCT-HHHHHHHCC---------CCSTHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHHH--------------hHHHHhcCCHHHHHHHHH---------hcCcHHHHHHH
Confidence 3455555555666666665543322111 223445566666665543 22345566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC
Q 048090 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348 (447)
Q Consensus 269 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 348 (447)
.....+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+..... | -++....++.-.|+
T Consensus 354 g~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~------~~n~af~~~~~lgd 417 (443)
T PF04053_consen 354 GDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G------DINIAFQAALLLGD 417 (443)
T ss_dssp HHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T-------HHHHHHHHHHHT-
T ss_pred HHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c------CHHHHHHHHHHcCC
Confidence 6666666666666666655321 233333444455555544444444332 1 13333444444555
Q ss_pred HHHHHHHHHH
Q 048090 349 LDKAWKLINE 358 (447)
Q Consensus 349 ~~~A~~~~~~ 358 (447)
.++..+++.+
T Consensus 418 ~~~cv~lL~~ 427 (443)
T PF04053_consen 418 VEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 268
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.90 E-value=0.08 Score=44.25 Aligned_cols=98 Identities=11% Similarity=0.155 Sum_probs=75.7
Q ss_pred HHHhhccCC--CCCCccHHHHHHHHHhC-----CChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCC-----------
Q 048090 39 LTNCLKFLN--PRNPLPFNVVISDFCRN-----GSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK----------- 100 (447)
Q Consensus 39 A~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------- 100 (447)
..+.|...+ .+|-.+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345566665 46777788777777543 566777778899999999999999999999875542
Q ss_pred -----chhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCC
Q 048090 101 -----DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136 (447)
Q Consensus 101 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 136 (447)
+-+-+..++++|...|+.||.++-..|+.++.+.+-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 234477888999999999999988888888887765
No 269
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.73 E-value=0.0097 Score=32.32 Aligned_cols=32 Identities=9% Similarity=0.227 Sum_probs=24.7
Q ss_pred HHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHH
Q 048090 356 INEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389 (447)
Q Consensus 356 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 389 (447)
|++.++.+ |++..+|+.++..+...|++++|+
T Consensus 2 y~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN--PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45566655 888888888888888888888775
No 270
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.54 E-value=0.036 Score=43.11 Aligned_cols=112 Identities=18% Similarity=0.087 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH---HcCC-------HHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhc
Q 048090 313 VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC---RAGE-------LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382 (447)
Q Consensus 313 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~-------~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 382 (447)
++.|.+..+...... +.|...++.-..++. .... +++|..-|++.+..+ |+...++..++.++...
T Consensus 7 FE~ark~aea~y~~n--P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~--P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN--PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN--PNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHH
Confidence 556666666654441 334554444443433 3333 445555566666665 88888899999988876
Q ss_pred CC-----------ccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 048090 383 GK-----------FELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLK 435 (447)
Q Consensus 383 g~-----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 435 (447)
+. +++|...|+++...+|.|......| .-.++|-++..++.+.+..
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL-------e~~~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL-------EMAAKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH-------HHHHTHHHHHHHHHHSSS-
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH-------HHHHhhHHHHHHHHHHHhh
Confidence 63 5677777788888888777544333 2556677787777766543
No 271
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.50 E-value=0.098 Score=44.45 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 048090 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE 397 (447)
Q Consensus 334 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 397 (447)
.++..++..+...|+++.+.+.++++.... |-+...|..++.+|.+.|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 344455555555555555555555555554 55555555555555555555555555555544
No 272
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.22 E-value=0.17 Score=40.61 Aligned_cols=127 Identities=17% Similarity=0.122 Sum_probs=86.4
Q ss_pred CCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 048090 291 NGTKPDEVAFVTVIS--ACSHTGQVKLGIEYFEWMVHDYKLEPG-PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS 367 (447)
Q Consensus 291 ~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 367 (447)
.+..|+...-...=+ .|-..|-+..|..-|.... .+.|+ +..||.|.--+...|+++.|.+.|+...+.+ |.
T Consensus 57 ~~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~ 131 (297)
T COG4785 57 RALTDEERAQLLFERGVLYDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PT 131 (297)
T ss_pred ccCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC--Cc
Confidence 345555543322222 2445666777777776666 46776 7788888888889999999999999998887 76
Q ss_pred chHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHh--cCChHHHHHH
Q 048090 368 SVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAK--FCMWDEIGQL 425 (447)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~ 425 (447)
...++..-+-++.--|++..|.+-+.+..+.+|+||. ..++.|.. .-+..+|..-
T Consensus 132 y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf---R~LWLYl~E~k~dP~~A~tn 188 (297)
T COG4785 132 YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF---RSLWLYLNEQKLDPKQAKTN 188 (297)
T ss_pred chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH---HHHHHHHHHhhCCHHHHHHH
Confidence 6655555566667788999999999888888888773 22233433 3355556543
No 273
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.22 E-value=1.6 Score=36.63 Aligned_cols=161 Identities=16% Similarity=0.167 Sum_probs=79.5
Q ss_pred ChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHhccCcH
Q 048090 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN---GT--KPDEVAFVTVISACSHTGQV 313 (447)
Q Consensus 239 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~--~p~~~~~~~ll~~~~~~~~~ 313 (447)
++++|+.-|++..++......-.-.+...++....+.+++++....+.+|... .+ .-+....++++...+.+.+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 55566666655444321111222223445566666666766666666665431 01 12344556666655555555
Q ss_pred HHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----------CCchHhHHHHHHHH
Q 048090 314 KLGIEYFEWMVHDYKLEPGP----EHYSCLVDLLCRAGELDKAWKLINEMLDRGHG----------SSSVSMWGALLSAC 379 (447)
Q Consensus 314 ~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------p~~~~~~~~l~~~~ 379 (447)
+.-.+.++.-.....-..+. .|-..|...|...|.+.+...+++++...... ..-..+|..-++.|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 54444444332211111121 22244555666666666666666665432110 11122455556666
Q ss_pred HhcCCccHHHHHHHHHhhhC
Q 048090 380 HDCGKFELGKLAAQKALELD 399 (447)
Q Consensus 380 ~~~g~~~~a~~~~~~~~~~~ 399 (447)
....+-..-..++++++...
T Consensus 202 T~qKnNKkLK~lYeqalhiK 221 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIK 221 (440)
T ss_pred hhhcccHHHHHHHHHHHHhh
Confidence 66666666667777666543
No 274
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.19 E-value=1 Score=34.30 Aligned_cols=88 Identities=8% Similarity=-0.053 Sum_probs=45.8
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 048090 52 LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLY 131 (447)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (447)
.....++..+...+.+......++.+...+. .+...++.++..+++.+. ....+.+.. ..+......+++.|
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c 79 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLC 79 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHH
Confidence 3345566666666667777777776666552 455566666666655432 222222221 11222233455555
Q ss_pred HccCChhhHHHHhccC
Q 048090 132 AKLLLIHDAELMFDEI 147 (447)
Q Consensus 132 ~~~g~~~~a~~~~~~~ 147 (447)
.+.+.++++..++.++
T Consensus 80 ~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 80 EKAKLYEEAVELYKKD 95 (140)
T ss_pred HHcCcHHHHHHHHHhh
Confidence 5555555555555554
No 275
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.19 E-value=2.6 Score=38.91 Aligned_cols=179 Identities=12% Similarity=0.095 Sum_probs=105.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 048090 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302 (447)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 302 (447)
|.....+++..+..+..+.-.+.+..++.. ...+...+..++.+|..+ ..++-..+|+++.+.. .+...+..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~-----~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~R 136 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLE-----YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGR 136 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHH-----hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHH
Confidence 444555666666666666666666655544 344566677777777777 5567777777777743 33333333
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCC------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHH
Q 048090 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPG------PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376 (447)
Q Consensus 303 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~ 376 (447)
-+..+...++.+.+..+|.++..+ +.|. ...|..|... -..+.+..+.+..++....-.-.-...+.-+-
T Consensus 137 eLa~~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~ 212 (711)
T COG1747 137 ELADKYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVY 212 (711)
T ss_pred HHHHHHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 333344447777777777777654 2331 2234444421 13456666666666654432222233355555
Q ss_pred HHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHH
Q 048090 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413 (447)
Q Consensus 377 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 413 (447)
.-|....++++|.+++...++.+..|.-+...++..+
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 6677777888888888877777766666666665544
No 276
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.17 E-value=1 Score=34.26 Aligned_cols=124 Identities=12% Similarity=0.132 Sum_probs=57.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc
Q 048090 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346 (447)
Q Consensus 267 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 346 (447)
.++..+...+.......+++.+...+. .+....+.++..|++.+ .......++. ..+.......++.|.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHHc
Confidence 444555555556666666666655542 34455555555555432 2222233221 11222233355555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhc-CCccHHHHHHHHHhhhCCCchhHHHHHHHHHH
Q 048090 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC-GKFELGKLAAQKALELDPHNVGIYVMLSNLYA 414 (447)
Q Consensus 347 g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 414 (447)
+.++++..++.++.. +...+..+... ++++.|.+++++ +.++..|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 666666665555421 11222222222 555555555553 224555555555443
No 277
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.15 E-value=0.13 Score=44.26 Aligned_cols=92 Identities=14% Similarity=0.151 Sum_probs=42.4
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCc
Q 048090 307 CSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385 (447)
Q Consensus 307 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 385 (447)
|.++|.+++|+.-|.... .+.| +..++..-..+|.+..++..|+.-...++..+ ..-..+|..-+.+-...|..
T Consensus 107 yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHHhhH
Confidence 344555555555554443 2233 44444444444555555555544444444332 11222344444444444555
Q ss_pred cHHHHHHHHHhhhCCCch
Q 048090 386 ELGKLAAQKALELDPHNV 403 (447)
Q Consensus 386 ~~a~~~~~~~~~~~~~~~ 403 (447)
.+|.+-++.++++.|.+.
T Consensus 182 ~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHhHHHHHhhCcccH
Confidence 555555555555555543
No 278
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.14 E-value=2.9 Score=39.33 Aligned_cols=181 Identities=12% Similarity=0.057 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHH
Q 048090 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK--PDEVAFVT 302 (447)
Q Consensus 225 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~ 302 (447)
.+|...+..-...|+.+.+.-.|+..... ...-...|--.+.-....|+.+-|..++....+--++ |....+.+
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~----cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIP----CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhH----HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 44555555556666666666666643221 2222333444444444456666666666555443222 22222222
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHH---HHHHHHHhCCCCCCchHhHHHHHH-
Q 048090 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPG-PEHYSCLVDLLCRAGELDKAW---KLINEMLDRGHGSSSVSMWGALLS- 377 (447)
Q Consensus 303 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~~~~~l~~- 377 (447)
. .+-..|++..|..+++.+..+ . |+ ...-..-+....+.|+.+.+. +++....... .+..+...+.-
T Consensus 374 ~--f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~---~~~~i~~~l~~~ 445 (577)
T KOG1258|consen 374 R--FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK---ENNGILEKLYVK 445 (577)
T ss_pred H--HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc---cCcchhHHHHHH
Confidence 2 234567999999999999876 3 65 333333445566788888877 4443333221 12222222222
Q ss_pred ----HHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcC
Q 048090 378 ----ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFC 417 (447)
Q Consensus 378 ----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 417 (447)
-+.-.++.+.|..++.++.+..|++...|..+++.....+
T Consensus 446 ~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 446 FARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 2334678899999999999999999999999998877665
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.05 E-value=0.21 Score=39.74 Aligned_cols=65 Identities=14% Similarity=0.070 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhc
Q 048090 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254 (447)
Q Consensus 190 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 254 (447)
+..+...|.+.|+.+.|.+.|.++.....+...-...+..++......+++..+...+.++....
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44444455555555555555555444311111122334445555555555555555555444443
No 280
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.02 E-value=0.99 Score=33.27 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 048090 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325 (447)
Q Consensus 266 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 325 (447)
...+..+...|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++-+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33444444455555555555544432 234444444444455555555555555444443
No 281
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.13 Score=41.96 Aligned_cols=101 Identities=12% Similarity=0.034 Sum_probs=66.5
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCChhh-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCc
Q 048090 307 CSHTGQVKLGIEYFEWMVHDYKLEPGPEH-YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385 (447)
Q Consensus 307 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 385 (447)
|....+++.|+.-|.+.+ -+.|+..+ |..=+.++.+..+++.+.+=..+.++.. |+.+.....+..+......+
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~--~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD--PNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC--hHHHHHHHHHHHHHHhhccc
Confidence 555566777777666665 34666533 4555666777777777777777776655 77777777777777777778
Q ss_pred cHHHHHHHHHhhhC-----CCchhHHHHHHHH
Q 048090 386 ELGKLAAQKALELD-----PHNVGIYVMLSNL 412 (447)
Q Consensus 386 ~~a~~~~~~~~~~~-----~~~~~~~~~l~~~ 412 (447)
++|+..++++.++. ++...+...|..+
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 88888877775532 2244556666544
No 282
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.00 E-value=5 Score=41.19 Aligned_cols=80 Identities=21% Similarity=0.302 Sum_probs=39.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH
Q 048090 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV--AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345 (447)
Q Consensus 268 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 345 (447)
.+.+|...|+|.+|+.+..++... -+.. +-..|+.-+...+++-+|-++..+...+ | ...+..|++
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd----~-----~~av~ll~k 1038 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD----P-----EEAVALLCK 1038 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC----H-----HHHHHHHhh
Confidence 344555566666666665555321 1111 1134555555666666666665555322 1 223344555
Q ss_pred cCCHHHHHHHHHHH
Q 048090 346 AGELDKAWKLINEM 359 (447)
Q Consensus 346 ~g~~~~A~~~~~~~ 359 (447)
...+++|..+....
T Consensus 1039 a~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1039 AKEWEEALRVASKA 1052 (1265)
T ss_pred HhHHHHHHHHHHhc
Confidence 55566666555443
No 283
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.00 E-value=0.087 Score=45.30 Aligned_cols=93 Identities=13% Similarity=0.023 Sum_probs=78.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChH
Q 048090 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420 (447)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 420 (447)
..|.+.|.+++|+..|.+.+... |-++.++..-..+|.+...+..|+.-...++.++..-..+|+.-+.+-...|+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 45889999999999999988776 8788889999999999999999999999999888767777888888777888888
Q ss_pred HHHHHHHHHHHcCCCCC
Q 048090 421 EIGQLRELMKEKGLKKD 437 (447)
Q Consensus 421 ~A~~~~~~m~~~~~~p~ 437 (447)
+|.+-++.... ++|+
T Consensus 183 EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 183 EAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHhHHHHHh--hCcc
Confidence 88877777665 4444
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.89 E-value=0.034 Score=30.67 Aligned_cols=25 Identities=12% Similarity=0.082 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 048090 406 YVMLSNLYAKFCMWDEIGQLRELMK 430 (447)
Q Consensus 406 ~~~l~~~~~~~g~~~~A~~~~~~m~ 430 (447)
|..|+..|.+.|++++|++++++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666643
No 285
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.86 E-value=0.047 Score=29.51 Aligned_cols=30 Identities=30% Similarity=0.336 Sum_probs=21.0
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhhhCC
Q 048090 371 MWGALLSACHDCGKFELGKLAAQKALELDP 400 (447)
Q Consensus 371 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 400 (447)
+|..++..+...|++++|...|+++++..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 366667777777777777777777776666
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.73 E-value=0.052 Score=29.91 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHh
Q 048090 372 WGALLSACHDCGKFELGKLAAQKAL 396 (447)
Q Consensus 372 ~~~l~~~~~~~g~~~~a~~~~~~~~ 396 (447)
|..|+..|.+.|++++|..++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666643
No 287
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.70 E-value=3.2 Score=37.50 Aligned_cols=153 Identities=12% Similarity=0.017 Sum_probs=85.5
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHH
Q 048090 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD--EVA 299 (447)
Q Consensus 222 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~ 299 (447)
....++..++..+.+.|+++.|...+..+...........+...-.-+..+...|+..+|+..++.........+ ...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 456688899999999999999999998765432111222445555567777889999999999999887433322 111
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc------CCHHHHHHHHHHHHhCCCCCCchHhHH
Q 048090 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA------GELDKAWKLINEMLDRGHGSSSVSMWG 373 (447)
Q Consensus 300 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~p~~~~~~~ 373 (447)
...+...... ..+.....- .... ....-...+..+..-.... +..+++...|.++.... |.....|.
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~--~~~~-~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~--~~~~k~~~ 296 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTN--LDKE-SKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD--PSWEKAWH 296 (352)
T ss_pred HHHHhhcccc--ccccccccc--hhhh-hHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC--hhHHHHHH
Confidence 1111111100 000000000 0000 0000112233333333333 77888888998888775 76666677
Q ss_pred HHHHHHHh
Q 048090 374 ALLSACHD 381 (447)
Q Consensus 374 ~l~~~~~~ 381 (447)
.+...+.+
T Consensus 297 ~~a~~~~~ 304 (352)
T PF02259_consen 297 SWALFNDK 304 (352)
T ss_pred HHHHHHHH
Confidence 66666544
No 288
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.56 E-value=0.63 Score=35.82 Aligned_cols=117 Identities=16% Similarity=0.049 Sum_probs=68.6
Q ss_pred HHHHHHHH---HHhccCcHHHHHHHHHHHHHhcCCCCChhhH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHH
Q 048090 298 VAFVTVIS---ACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY-SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373 (447)
Q Consensus 298 ~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 373 (447)
.+.+.|+. .-...++.+.+..+++.+. -+.|..... ..-...+...|++.+|..+|+++.... |..+. -.
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~-~k 81 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPY-AK 81 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChH-HH
Confidence 34445554 3457789999999999987 356753322 222344789999999999999988776 54444 34
Q ss_pred HHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHH
Q 048090 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEI 422 (447)
Q Consensus 374 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 422 (447)
.|+..|....+-..=...-+++++.++ ++.+. .++..+........|
T Consensus 82 ALlA~CL~~~~D~~Wr~~A~evle~~~-d~~a~-~Lv~~Ll~~~~~~~a 128 (160)
T PF09613_consen 82 ALLALCLYALGDPSWRRYADEVLESGA-DPDAR-ALVRALLARADLEPA 128 (160)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhcCC-ChHHH-HHHHHHHHhccccch
Confidence 455444443333334444555555553 33333 333344444444444
No 289
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.53 E-value=2.2 Score=37.20 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCc--HHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048090 279 KEVIKLYEAMLMNGTKPD--EVAFVTVISACSHTGQ--VKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341 (447)
Q Consensus 279 ~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 341 (447)
+.++.+|+.+.+.|...+ ......++..+..... ...+.++++.+.+. ++++....|..+.-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 455666666666665443 2333344433322222 34566677777665 77776666655543
No 290
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.50 E-value=0.49 Score=40.36 Aligned_cols=79 Identities=15% Similarity=0.133 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHH
Q 048090 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM-----NGTKPDEV 298 (447)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~ 298 (447)
..++..++..+...|+.+.+...++.+... .+-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~----dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~ 228 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIEL----DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPE 228 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc----CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHH
Confidence 345666777788888888888888877665 666777888888888888888888888887755 36777666
Q ss_pred HHHHHHHH
Q 048090 299 AFVTVISA 306 (447)
Q Consensus 299 ~~~~ll~~ 306 (447)
+.......
T Consensus 229 ~~~~y~~~ 236 (280)
T COG3629 229 LRALYEEI 236 (280)
T ss_pred HHHHHHHH
Confidence 55544443
No 291
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.33 E-value=0.12 Score=27.84 Aligned_cols=28 Identities=21% Similarity=0.231 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 404 GIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 404 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
.+|..++.+|...|++++|+..+++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 5789999999999999999999999987
No 292
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.32 E-value=0.12 Score=27.77 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 404 GIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 404 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
.++..++.+|...|++++|++.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5688999999999999999999999886
No 293
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.31 E-value=0.6 Score=39.29 Aligned_cols=31 Identities=10% Similarity=0.082 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048090 277 YFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307 (447)
Q Consensus 277 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 307 (447)
.++=....++.|.+.|+.-|..+|..|+..+
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~Llnvf 117 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVF 117 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhC
Confidence 3344444445555555555555555555443
No 294
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.18 E-value=6.3 Score=38.83 Aligned_cols=131 Identities=10% Similarity=-0.035 Sum_probs=79.3
Q ss_pred cchHHHhhccCCCCCCccHH----HHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHH
Q 048090 36 LGTLTNCLKFLNPRNPLPFN----VVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111 (447)
Q Consensus 36 ~~~A~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 111 (447)
+..|..+-+...- ++..-. .-.+-+-+.|++++|...|-+-... +.|+ .++.-+.....+..--.+++.
T Consensus 350 y~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~ 422 (933)
T KOG2114|consen 350 YKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEA 422 (933)
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHH
Confidence 6777777665432 222222 2334456678999998888766543 3332 245556666677777778888
Q ss_pred HHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCCchhh--HHHHHHHHHhcCCHHHHHHHH
Q 048090 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC--ANALLSGYCEAKLWAGGLELV 175 (447)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~ 175 (447)
+.+.|+.-... -..|+.+|.+.++.++-.++.+..... ... ....+..+.+.+-.++|..+-
T Consensus 423 L~~~gla~~dh-ttlLLncYiKlkd~~kL~efI~~~~~g-~~~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 423 LHKKGLANSDH-TTLLLNCYIKLKDVEKLTEFISKCDKG-EWFFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHcccccchh-HHHHHHHHHHhcchHHHHHHHhcCCCc-ceeeeHHHHHHHHHHhChHHHHHHHH
Confidence 88888654333 366888999988888888877776521 111 233444444455555544443
No 295
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.14 E-value=1.7 Score=34.21 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc---cCc-------HHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHc
Q 048090 278 FKEVIKLYEAMLMNGTKPDEVAFVTVISACSH---TGQ-------VKLGIEYFEWMVHDYKLEPG-PEHYSCLVDLLCRA 346 (447)
Q Consensus 278 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~~~-------~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 346 (447)
++.|.+.++.-...+ +.|...++.-..++.. ... +++|+.-|++.+ .+.|+ ..++..+..+|...
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL---~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEAL---KINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH---HH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH---hcCCchHHHHHHHHHHHHHH
Confidence 456666666655443 3355554444444433 333 344555555555 35787 67888888888754
Q ss_pred CC-----------HHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhh
Q 048090 347 GE-----------LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398 (447)
Q Consensus 347 g~-----------~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 398 (447)
+. +++|.+.|++..... |++.. |+.-+....+ |-++..++.+.
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~--P~ne~-Y~ksLe~~~k------ap~lh~e~~~~ 136 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDED--PNNEL-YRKSLEMAAK------APELHMEIHKQ 136 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH---TT-HH-HHHHHHHHHT------HHHHHHHHHHS
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhcC--CCcHH-HHHHHHHHHh------hHHHHHHHHHH
Confidence 32 556666777777766 76665 7766666543 56666665553
No 296
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.02 E-value=2.8 Score=34.08 Aligned_cols=161 Identities=16% Similarity=0.126 Sum_probs=78.1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 048090 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340 (447)
Q Consensus 261 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 340 (447)
-+.+||-+.-.+...|+++.|.+.|+...+....-+-...|.-| ++.-.|+++.|.+-+...-+...-.|-...|.-++
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 35567777777777777777777777777643221211111111 23345777777766655544322233233333333
Q ss_pred HHHHHcCCHHHHHH-HHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCc-------hhHHHHHHHH
Q 048090 341 DLLCRAGELDKAWK-LINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN-------VGIYVMLSNL 412 (447)
Q Consensus 341 ~~~~~~g~~~~A~~-~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~ 412 (447)
. ..-++.+|.. +.++.... +..-|...+..+.- |++. .+.+++++.....++ ..+|..|+.-
T Consensus 177 E---~k~dP~~A~tnL~qR~~~~-----d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 177 E---QKLDPKQAKTNLKQRAEKS-----DKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred H---hhCCHHHHHHHHHHHHHhc-----cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 2 2223444443 33333332 11123332222221 2221 122333333222222 3467777777
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 048090 413 YAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 413 ~~~~g~~~~A~~~~~~m~~~ 432 (447)
|...|+.++|..+|+-....
T Consensus 247 ~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 247 YLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HhccccHHHHHHHHHHHHHH
Confidence 77888888887777766543
No 297
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=93.91 E-value=5.2 Score=36.92 Aligned_cols=246 Identities=9% Similarity=-0.011 Sum_probs=134.9
Q ss_pred HHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcC------CcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHH
Q 048090 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGL------SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242 (447)
Q Consensus 169 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 242 (447)
+....+|++..+. -|+...+...|..|... ..+.....+++.......-.+.....|..+.-.+.......+
T Consensus 299 s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~ 376 (568)
T KOG2396|consen 299 SRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE 376 (568)
T ss_pred HHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH
Confidence 3444666666553 45555565555555322 234455556665555432222334556666666666555444
Q ss_pred HHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcC-CHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc-HHHH--H
Q 048090 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNG-YFKE-VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ-VKLG--I 317 (447)
Q Consensus 243 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~-a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a--~ 317 (447)
+...+. .+ +...+...|..-++...+.. +++- -..++......-..+-...++... .++ +... .
T Consensus 377 ~a~~l~--~e----~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~ 445 (568)
T KOG2396|consen 377 VAVKLT--TE----LFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLD 445 (568)
T ss_pred HHHHhh--HH----HhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHH
Confidence 333332 01 24455566655555444321 2221 122333333321222223333333 122 1111 1
Q ss_pred HHHHHHHHhcCCCCChhhH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHh--cCCccHHHHHHHH
Q 048090 318 EYFEWMVHDYKLEPGPEHY-SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD--CGKFELGKLAAQK 394 (447)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~a~~~~~~ 394 (447)
.++..... -..|+..++ +.+++-+.+.|-..+|...+..+.... |.+...|..+++.-.. ..+...+..+|+.
T Consensus 446 ~Ii~a~~s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp--p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~ 521 (568)
T KOG2396|consen 446 LIISALLS--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP--PFSLDLFRKMIQFEKEQESCNLANIREYYDR 521 (568)
T ss_pred HHHHHHHH--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC--CccHHHHHHHHHHHhhHhhcCchHHHHHHHH
Confidence 12222222 234554443 667777888888999999999988775 7777777777765432 2347778888888
Q ss_pred HhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 395 ALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 395 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
++...-.++..|......-...|..+.+-.++.+..+
T Consensus 522 a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 522 ALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 8876557888888888777788888888777666654
No 298
>PRK09687 putative lyase; Provisional
Probab=93.69 E-value=4.3 Score=35.21 Aligned_cols=244 Identities=10% Similarity=-0.048 Sum_probs=154.0
Q ss_pred HHHhhccCCCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCch----hHHHHHHHHHHH
Q 048090 39 LTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA----RFGKQVQAHVTK 114 (447)
Q Consensus 39 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~ 114 (447)
...+++.+..+|.......+.++...|. ..+...+..+... +|...=...+.+++..|+. .++...+..+..
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~ 100 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL 100 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh
Confidence 3445555667888888888888887775 4455555555543 3555555566667777653 457777776644
Q ss_pred cCCCCchhhHHHHHHHHHccCCh-----hhHHHHhcc-CCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHh
Q 048090 115 SGWLSSVFVGSALIDLYAKLLLI-----HDAELMFDE-IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF 188 (447)
Q Consensus 115 ~~~~~~~~~~~~l~~~~~~~g~~-----~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 188 (447)
. .++..+-...+.++...+.. ..+...+.. +..++..+-...+.++.+.++ +.++..+-.+.+ .++..
T Consensus 101 ~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~ 174 (280)
T PRK09687 101 E--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGD 174 (280)
T ss_pred c--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHH
Confidence 3 56666666677777665432 233444433 335566677777888888776 456666666665 35555
Q ss_pred hHHHHHHHHhcCC-cHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHH
Q 048090 189 TLSALLRACAGLS-AAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267 (447)
Q Consensus 189 ~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 267 (447)
.-...+.++.+.+ ....+...+..+... ++..+....+.++.+.|+.. |...+-.... .++ ....
T Consensus 175 VR~~A~~aLg~~~~~~~~~~~~L~~~L~D-----~~~~VR~~A~~aLg~~~~~~-av~~Li~~L~------~~~--~~~~ 240 (280)
T PRK09687 175 VRNWAAFALNSNKYDNPDIREAFVAMLQD-----KNEEIRIEAIIGLALRKDKR-VLSVLIKELK------KGT--VGDL 240 (280)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhcC-----CChHHHHHHHHHHHccCChh-HHHHHHHHHc------CCc--hHHH
Confidence 6666666666553 234566666666543 47777888888898888854 4444442211 122 3456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 048090 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309 (447)
Q Consensus 268 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 309 (447)
.+.++...|.. +|...+..+.+. .||..+-...+.+|.+
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 78889999995 788888888874 4577777777766643
No 299
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.58 E-value=3.1 Score=33.20 Aligned_cols=115 Identities=13% Similarity=0.053 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHH--HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHHcCCHHHHH
Q 048090 280 EVIKLYEAMLMNGTKPDEVAF--VTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGELDKAW 353 (447)
Q Consensus 280 ~a~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~ 353 (447)
+.....+++...+....-.++ ..+...+...+++++|...++..... ..| ...-..|.+.....|.+++|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 444455555543212111122 23344667888899998888877632 222 122234556677888999999
Q ss_pred HHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCC
Q 048090 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400 (447)
Q Consensus 354 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 400 (447)
..++.....++. ......-+.++...|+-++|+..|+++++.++
T Consensus 147 ~~L~t~~~~~w~---~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 147 KTLDTIKEESWA---AIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHhccccccHH---HHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 998887776532 22355667788889999999999999888763
No 300
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.49 E-value=2.9 Score=32.62 Aligned_cols=132 Identities=15% Similarity=0.159 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChh-hHHHHH
Q 048090 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE-VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE-HYSCLV 340 (447)
Q Consensus 263 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~ 340 (447)
..|..-+. +.+.+..++|+.-|..+.+.|...-+ .............|+...|...|+++-.+ .-.|-.. -...|-
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHH
Confidence 33443333 35567778888888888777644211 11222333456778888888888888755 2223221 222222
Q ss_pred H--HHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 048090 341 D--LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE 397 (447)
Q Consensus 341 ~--~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 397 (447)
. .+...|-++....-++.+...+- |-....-..|.-+-.+.|++..|...|+.+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n-~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGN-PMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCC-hhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 2 24567778777777776655442 54555567777888888888888888887766
No 301
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.38 E-value=2.4 Score=33.79 Aligned_cols=96 Identities=9% Similarity=-0.076 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCc--HhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHH-
Q 048090 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYD--HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS- 229 (447)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~- 229 (447)
..+..+...|.+.|+.+.|++.|.++.+....+. ...+..+++.....+++..+.....++...... ..|....+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-GGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-cchHHHHHHH
Confidence 4566777778888888888888888776543333 234556677777778888887777776664211 111111111
Q ss_pred -H--HHHHHhcCChHHHHHHHHh
Q 048090 230 -L--IEMYGKCGLVTKALQVFNL 249 (447)
Q Consensus 230 -l--~~~~~~~g~~~~A~~~~~~ 249 (447)
. .-.+...+++..|-+.|-.
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHc
Confidence 1 1123446777777777763
No 302
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.36 E-value=0.15 Score=27.14 Aligned_cols=28 Identities=14% Similarity=0.107 Sum_probs=14.1
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHhhhCC
Q 048090 373 GALLSACHDCGKFELGKLAAQKALELDP 400 (447)
Q Consensus 373 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 400 (447)
..++.++.+.|++++|...++++++..|
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3344445555555555555555555444
No 303
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.30 E-value=0.049 Score=46.82 Aligned_cols=87 Identities=16% Similarity=0.099 Sum_probs=44.1
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHH
Q 048090 309 HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388 (447)
Q Consensus 309 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 388 (447)
..|.++.|++.|...+.. -++....|..-..++.+.++...|++=+...+..+ |+...-|-.-..+....|++++|
T Consensus 126 n~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred cCcchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHH
Confidence 345555555555555432 12234444444445555555555555555555544 44444444444455555555555
Q ss_pred HHHHHHHhhhC
Q 048090 389 KLAAQKALELD 399 (447)
Q Consensus 389 ~~~~~~~~~~~ 399 (447)
...+..+.+++
T Consensus 202 a~dl~~a~kld 212 (377)
T KOG1308|consen 202 AHDLALACKLD 212 (377)
T ss_pred HHHHHHHHhcc
Confidence 55555555554
No 304
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.20 E-value=6.9 Score=36.08 Aligned_cols=110 Identities=12% Similarity=-0.025 Sum_probs=70.4
Q ss_pred HhccCcHHHHHHHHHHHH--HhcCCCCC-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHh-------CCCCCCc----
Q 048090 307 CSHTGQVKLGIEYFEWMV--HDYKLEPG-----PEHYSCLVDLLCRAGELDKAWKLINEMLD-------RGHGSSS---- 368 (447)
Q Consensus 307 ~~~~~~~~~a~~~~~~~~--~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~~---- 368 (447)
+.-.|++..|.+++...- +..|...+ -..||.|.-.+.+.|.+..+..+|.+.++ .|++|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 344678888877765431 11111111 12235555445566666666666665543 4544422
Q ss_pred -----hHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhc
Q 048090 369 -----VSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKF 416 (447)
Q Consensus 369 -----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 416 (447)
..+.+..+-.|...|++-.|.+.|.++......+|..|..|+.+|.-.
T Consensus 330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 223455677888999999999999999999888999999999998643
No 305
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.08 E-value=1.7 Score=39.64 Aligned_cols=135 Identities=14% Similarity=0.127 Sum_probs=87.1
Q ss_pred HHHHHhcCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcC
Q 048090 269 LGVYGRNGYFKEVIK-LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347 (447)
Q Consensus 269 ~~~~~~~g~~~~a~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 347 (447)
|.--...|+.-.|-+ ++..++...-.|+.....+.| ....|+++.+.+.+...... +.....+...+++...+.|
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchh
Confidence 333445677666654 444444443455554444433 46678888888887776532 3445667778888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHH
Q 048090 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVML 409 (447)
Q Consensus 348 ~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 409 (447)
++++|..+..-|+...+.. +.+...-.......|-++++...|++.+.++|+...-|..+
T Consensus 372 r~~~a~s~a~~~l~~eie~--~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~ 431 (831)
T PRK15180 372 RWREALSTAEMMLSNEIED--EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNF 431 (831)
T ss_pred hHHHHHHHHHHHhccccCC--hhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceee
Confidence 8888888888888777543 33334444455567778888888888888887754444433
No 306
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.06 E-value=1.3 Score=33.47 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=43.8
Q ss_pred HHHHHHHHH---HhccCcHHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048090 298 VAFVTVISA---CSHTGQVKLGIEYFEWMVHDYKLEPG---PEHYSCLVDLLCRAGELDKAWKLINEMLDRG 363 (447)
Q Consensus 298 ~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 363 (447)
...+.|+.. -...++++++..+++.+. -+.|+ ..++... .+...|++++|..+|++..+.+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALR---VLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 334444443 345889999999999887 35665 4444443 4789999999999999998886
No 307
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.89 E-value=10 Score=37.31 Aligned_cols=420 Identities=12% Similarity=0.015 Sum_probs=211.3
Q ss_pred HhhhhhhhhHHHhhhhhhhhhcccccCCcchHHHhhccCC----CCCCc-----cHHHHHHHHHhCCChhhHHHHHHHHH
Q 048090 8 ETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLN----PRNPL-----PFNVVISDFCRNGSPLYALKTFSFMH 78 (447)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~----~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~m~ 78 (447)
+..+.+..+..++-.+...|...-. |++.|...+.+.. +++.. +...++..+.+.+... |...+++..
T Consensus 50 ~~~l~p~~ea~~~l~la~iL~~eT~--n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I 126 (608)
T PF10345_consen 50 QFKLSPRQEARVRLRLASILLEETE--NLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAI 126 (608)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHH
Confidence 3445555667778888888887665 7899998888642 22211 1234556666665554 888888876
Q ss_pred hcC----CCCchhhHHHH-HHHhccCCchhHHHHHHHHHHHcC---CCCchhhHHHHHHHHH--ccCChhhHHHHhccCC
Q 048090 79 VHG----IFLDTYALCSS-LTASTSVKDARFGKQVQAHVTKSG---WLSSVFVGSALIDLYA--KLLLIHDAELMFDEIP 148 (447)
Q Consensus 79 ~~~----~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 148 (447)
+.- ..+-...|..+ +..+...++...|.+.++.+...- ..|...++-.++.+.. +.+..+++.+.++++.
T Consensus 127 ~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~ 206 (608)
T PF10345_consen 127 EDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAI 206 (608)
T ss_pred HHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 531 12223333333 222333479999999998877643 2344444455555444 3454555655554441
Q ss_pred -------------CCchhhHHHHHHH--HHhcCCHHHHHHHHHhhhh-------cC----------CC------------
Q 048090 149 -------------VKNSVCANALLSG--YCEAKLWAGGLELVRLMPA-------LG----------LD------------ 184 (447)
Q Consensus 149 -------------~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~-------~~----------~~------------ 184 (447)
.|...+|..++.. +...|+++.+...++++.+ .. ++
T Consensus 207 ~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~ 286 (608)
T PF10345_consen 207 AQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGG 286 (608)
T ss_pred HHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCC
Confidence 1234456666554 4567777777766655531 10 00
Q ss_pred -CcHh---------hHHHHHHH--HhcCCcHHHHHHHHHHHHHhhhcCC------CCh--------hHHHHHHH------
Q 048090 185 -YDHF---------TLSALLRA--CAGLSAAEFGRQVHAYMIRKCCNLG------NDV--------FMQSSLIE------ 232 (447)
Q Consensus 185 -~~~~---------~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~------~~~--------~~~~~l~~------ 232 (447)
|... .+.-++++ ....+..+++.+++++..+.-.+.. +.. ..|...+.
T Consensus 287 ~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y 366 (608)
T PF10345_consen 287 TPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFY 366 (608)
T ss_pred ceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHH
Confidence 1111 11112222 2234444466666666544311111 111 11211222
Q ss_pred ---HHHhcCChHHHHHHHHhhhhhcccCCC---cchhhH--HHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCC
Q 048090 233 ---MYGKCGLVTKALQVFNLAGHRLEGEIN---KDVVLW--TSMLGVYGRNGYFKEVIKLYE--------AMLMNGTKPD 296 (447)
Q Consensus 233 ---~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~--~~l~~~~~~~g~~~~a~~~~~--------~m~~~~~~p~ 296 (447)
..+-.+++..|...++.+......... .....+ ....-.+...|+.+.|...|. .....+...+
T Consensus 367 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E 446 (608)
T PF10345_consen 367 QIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE 446 (608)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence 224568899999999877654322221 112222 233334456799999999997 4444454444
Q ss_pred HHHHHHH--HHHHhc--cCcHHH--HHHHHHHHHHhcCCCCC--hhhHHHH-HHHHHHcC--CHHHHHHHHHHHHhCC--
Q 048090 297 EVAFVTV--ISACSH--TGQVKL--GIEYFEWMVHDYKLEPG--PEHYSCL-VDLLCRAG--ELDKAWKLINEMLDRG-- 363 (447)
Q Consensus 297 ~~~~~~l--l~~~~~--~~~~~~--a~~~~~~~~~~~~~~~~--~~~~~~l-~~~~~~~g--~~~~A~~~~~~~~~~~-- 363 (447)
..++..+ +-.+.. .....+ ..++++.+.....-.|+ ..++..+ +.++.... ...++...+.+..+.-
T Consensus 447 l~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~ 526 (608)
T PF10345_consen 447 LYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANN 526 (608)
T ss_pred HHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHH
Confidence 4444321 111122 222223 67777766543222332 3333333 33332211 1224444444332211
Q ss_pred -CCCCchH--hHHHHHHHHHhcCCccHHHHHHHHHhhhC---CC-chhHH-----HHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 364 -HGSSSVS--MWGALLSACHDCGKFELGKLAAQKALELD---PH-NVGIY-----VMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 364 -~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~-~~~~~-----~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
..-.... +++.+...+. .|+..+.......+...- |+ ....| ..+...|...|+.++|.....+...
T Consensus 527 ~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 527 KLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 0011111 2333333333 688877766666555432 22 23344 3445557788999999988877653
No 308
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.49 E-value=11 Score=36.57 Aligned_cols=148 Identities=14% Similarity=0.075 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHH-----hcCChHHHHHHHHhhhh----hcccCCCcchhhHHHHHHHHH
Q 048090 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG-----KCGLVTKALQVFNLAGH----RLEGEINKDVVLWTSMLGVYG 273 (447)
Q Consensus 203 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~ 273 (447)
...+.++++...+. | +......+..+|. ...+.+.|..+|+.+.. ....+ ......-+..+|.
T Consensus 228 ~~~a~~~~~~~a~~--g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~ 299 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--G---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYL 299 (552)
T ss_pred hhHHHHHHHHHHhh--c---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHh
Confidence 34566666666655 3 3333333333332 34566777777765433 00011 2334444555555
Q ss_pred hcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH---
Q 048090 274 RNG-----YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH-TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC--- 344 (447)
Q Consensus 274 ~~g-----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 344 (447)
+.. +.+.|..++....+.| .|+...+...+..... ..+...|.++|....+. |..+ .+-.+..+|.
T Consensus 300 ~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-G~~~---A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 300 QGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-GHIL---AIYRLALCYELGL 374 (552)
T ss_pred cCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-CChH---HHHHHHHHHHhCC
Confidence 432 3455666666665554 3344333222222222 23455666666665443 3211 1111222221
Q ss_pred -HcCCHHHHHHHHHHHHhCC
Q 048090 345 -RAGELDKAWKLINEMLDRG 363 (447)
Q Consensus 345 -~~g~~~~A~~~~~~~~~~~ 363 (447)
-.-+.+.|..++.+..+.|
T Consensus 375 gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc
Confidence 1224556666666666555
No 309
>PRK09687 putative lyase; Provisional
Probab=92.48 E-value=6.7 Score=34.07 Aligned_cols=232 Identities=9% Similarity=-0.016 Sum_probs=137.7
Q ss_pred CchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCCh----hhHHHHhccC--CCCchhhHHH
Q 048090 84 LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLI----HDAELMFDEI--PVKNSVCANA 157 (447)
Q Consensus 84 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~~--~~~~~~~~~~ 157 (447)
+|.......+.++...|..+ +...+..+.+ .+|...-...+.++...|+. +++...+..+ ..++...-..
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~ 110 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRAS 110 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHH
Confidence 35555555666666665433 3333333443 34566666677777777763 4577777665 4566666666
Q ss_pred HHHHHHhcCCH-----HHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHH
Q 048090 158 LLSGYCEAKLW-----AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232 (447)
Q Consensus 158 l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (447)
.+.++...+.. ..+...+..... .++..+-...+.++.+.++ ..+...+-.+.+. ++..+-...+.
T Consensus 111 A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d-----~~~~VR~~A~~ 181 (280)
T PRK09687 111 AINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD-----PNGDVRNWAAF 181 (280)
T ss_pred HHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC-----CCHHHHHHHHH
Confidence 66666555421 233444434333 3466666677788877776 4566666666554 34455566666
Q ss_pred HHHhcC-ChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 048090 233 MYGKCG-LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311 (447)
Q Consensus 233 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 311 (447)
++.+.+ ....+...+..+. ..++..+-...+.++.+.|+ ..|...+-+..+.+ + .....+.++...|
T Consensus 182 aLg~~~~~~~~~~~~L~~~L------~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig 249 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAML------QDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELG 249 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHh------cCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcC
Confidence 666543 2334555544322 34566777778888888888 45666655555543 2 2346778888888
Q ss_pred cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 048090 312 QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344 (447)
Q Consensus 312 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 344 (447)
.. +|...+..+.+. .||..+-...+.++.
T Consensus 250 ~~-~a~p~L~~l~~~---~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 250 DK-TLLPVLDTLLYK---FDDNEIITKAIDKLK 278 (280)
T ss_pred CH-hHHHHHHHHHhh---CCChhHHHHHHHHHh
Confidence 86 688888888754 457666665565553
No 310
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=92.39 E-value=3.8 Score=33.85 Aligned_cols=118 Identities=14% Similarity=0.048 Sum_probs=74.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHHcCC
Q 048090 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEV-AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP-EHYSCLVDLLCRAGE 348 (447)
Q Consensus 271 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~ 348 (447)
.|....+++.|+..|.+.+. +.|+.. -|+.-+-++.+..+++.+..--.+.+ .+.||. .....+..++.....
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhcc
Confidence 35556678888888877776 566664 44556667777888888877766665 457763 333445566677788
Q ss_pred HHHHHHHHHHHHhC----CCCCCchHhHHHHHHHHHhcCCccHHHHHHHH
Q 048090 349 LDKAWKLINEMLDR----GHGSSSVSMWGALLSACHDCGKFELGKLAAQK 394 (447)
Q Consensus 349 ~~~A~~~~~~~~~~----~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 394 (447)
+++|+..+++.... .+ |....++..|..+-...=...+..++.++
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~-~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPF-TFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 89999888887332 22 22333466666655444444555555554
No 311
>PRK10941 hypothetical protein; Provisional
Probab=92.27 E-value=1.3 Score=37.95 Aligned_cols=68 Identities=9% Similarity=-0.084 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHH
Q 048090 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406 (447)
Q Consensus 337 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 406 (447)
+.+-.+|.+.++++.|+.+.+.++... |+++.-+.--+..|.+.|.+..|..-++..++..|.++.+-
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 446677889999999999999999877 88888788888899999999999999999999888877543
No 312
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.25 E-value=23 Score=39.74 Aligned_cols=316 Identities=10% Similarity=-0.031 Sum_probs=162.0
Q ss_pred HHHHHhccCCchhHHHHHHHHHHHcCC--CCchhhHHHHHHHHHccCChhhHHHHhcc-CCCCchhhHHHHHHHHHhcCC
Q 048090 91 SSLTASTSVKDARFGKQVQAHVTKSGW--LSSVFVGSALIDLYAKLLLIHDAELMFDE-IPVKNSVCANALLSGYCEAKL 167 (447)
Q Consensus 91 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 167 (447)
++..+-.+.+.+.+|...++.-..... ......+..+...|+.-+++|...-+... ...++. ..-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 334455566777777777776311100 11223344455588888888877766663 333322 233444567788
Q ss_pred HHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHH-HHHHHhcCChHHHHHH
Q 048090 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL-IEMYGKCGLVTKALQV 246 (447)
Q Consensus 168 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~ 246 (447)
++.|..-|+.+.+.+ ++...+++.++......+.++.+.-..+-.... ..+....++.+ +.+-.+.++++.....
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~---~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN---RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc---cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 888888888888764 333667777777766777777776655554443 22333333322 3344666777766655
Q ss_pred HHhhhhhcccCCCcchhhHHHH--HHHHHhcCCHH--HHHHHHHHHHhCCCCC-C--------HHHHHHHHHHHhccCcH
Q 048090 247 FNLAGHRLEGEINKDVVLWTSM--LGVYGRNGYFK--EVIKLYEAMLMNGTKP-D--------EVAFVTVISACSHTGQV 313 (447)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~--~a~~~~~~m~~~~~~p-~--------~~~~~~ll~~~~~~~~~ 313 (447)
.. ..+..+|... .....+..+-+ .-.+..+.+++.-+.| . ...|..++....-
T Consensus 1541 l~----------~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l---- 1606 (2382)
T KOG0890|consen 1541 LS----------DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLL---- 1606 (2382)
T ss_pred hh----------cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHH----
Confidence 43 1223333332 22222222211 1112333333221111 0 0112222221110
Q ss_pred HHHHHHHHHHHHhcCCCCCh------hhHHHHHHHHHHcCCHHHHHHHHHHH-----HhCCCCCCchHhHHHHHHHHHhc
Q 048090 314 KLGIEYFEWMVHDYKLEPGP------EHYSCLVDLLCRAGELDKAWKLINEM-----LDRGHGSSSVSMWGALLSACHDC 382 (447)
Q Consensus 314 ~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~p~~~~~~~~l~~~~~~~ 382 (447)
.+.-.......+..++. .-|..-+..-....+..+-+--+++. .+.+....-...|....+.....
T Consensus 1607 ---~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~a 1683 (2382)
T KOG0890|consen 1607 ---LELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLA 1683 (2382)
T ss_pred ---HHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhc
Confidence 00001111111222321 11211111111111122211112221 12133344555789999999999
Q ss_pred CCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 383 GKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 383 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
|.++.|...+-++.+..++ .++.-.+......|+...|+.++++....
T Consensus 1684 G~~q~A~nall~A~e~r~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1684 GHLQRAQNALLNAKESRLP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred ccHHHHHHHHHhhhhcccc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9999999999888887754 45777788889999999999999988754
No 313
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.23 E-value=6.7 Score=33.53 Aligned_cols=68 Identities=24% Similarity=0.106 Sum_probs=57.4
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCC
Q 048090 371 MWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE-----KGLKKDV 438 (447)
Q Consensus 371 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~ 438 (447)
+++.....|...|.+.+|.++.++++..+|-+...+..|+..+...|+--.|.+-++++.+ .|+..|.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdd 353 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDD 353 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcch
Confidence 3556677899999999999999999999999999999999999999998888877777643 4565543
No 314
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.23 E-value=13 Score=36.83 Aligned_cols=49 Identities=12% Similarity=0.113 Sum_probs=21.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 048090 270 GVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319 (447)
Q Consensus 270 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 319 (447)
.-|....+...-..+++.+.+.|.. +...-..|+.+|.+.++.+.-.++
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ef 453 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEF 453 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHH
Confidence 3334444444444445555554433 222233445555555555444443
No 315
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.20 E-value=12 Score=38.71 Aligned_cols=130 Identities=12% Similarity=0.035 Sum_probs=66.3
Q ss_pred ccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHH
Q 048090 133 KLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212 (447)
Q Consensus 133 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 212 (447)
+.|.+.+|+.++.-=.+.-...|.+....+.....+++|.-.|+..-+. .-.+.+|...|+|.+|..+..+
T Consensus 920 kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~q 990 (1265)
T KOG1920|consen 920 KHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQ 990 (1265)
T ss_pred hcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHh
Confidence 3344444444333322223344555555555666666666666554321 2345566666777777776665
Q ss_pred HHHhhhcCCCChh--HHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048090 213 MIRKCCNLGNDVF--MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287 (447)
Q Consensus 213 ~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 287 (447)
+... .+.. +-..|+.-+...+++-+|-++..+... . ....+..||+...+++|.++...
T Consensus 991 l~~~-----~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s------d-----~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 991 LSEG-----KDELVILAEELVSRLVEQRKHYEAAKILLEYLS------D-----PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred hcCC-----HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc------C-----HHHHHHHHhhHhHHHHHHHHHHh
Confidence 5332 1211 224556666666776666666653211 1 12334455555666666655544
No 316
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.10 E-value=13 Score=36.57 Aligned_cols=66 Identities=18% Similarity=-0.026 Sum_probs=43.6
Q ss_pred CCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCc-------hhHHHHHHHHHHHcC
Q 048090 50 NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKD-------ARFGKQVQAHVTKSG 116 (447)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~ 116 (447)
|...--.+|-.|.|+|++++|.++....... .......+...+..+....+ -+....-|++..+..
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 4445567888999999999999999666554 45556677888888876533 234555566665543
No 317
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=92.09 E-value=1.3 Score=35.84 Aligned_cols=75 Identities=21% Similarity=0.276 Sum_probs=54.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc---hHhHHH
Q 048090 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSS---VSMWGA 374 (447)
Q Consensus 299 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~~ 374 (447)
|.+..++.+.+.+...+++...+.-++. +| +..+-..+++.+|-.|++++|..-++-..... |++ ...|..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka---kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~--p~~t~~a~lyr~ 77 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA---KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLS--PQDTVGASLYRH 77 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc---CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcC--cccchHHHHHHH
Confidence 4455677788889999999998877764 55 46667788999999999999998887766543 432 234555
Q ss_pred HHHH
Q 048090 375 LLSA 378 (447)
Q Consensus 375 l~~~ 378 (447)
++.+
T Consensus 78 lir~ 81 (273)
T COG4455 78 LIRC 81 (273)
T ss_pred HHHH
Confidence 5544
No 318
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.88 E-value=4.8 Score=31.12 Aligned_cols=110 Identities=18% Similarity=0.094 Sum_probs=63.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcC
Q 048090 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT-VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347 (447)
Q Consensus 269 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 347 (447)
+..-.+.++.+++..++..+.- .+|....... -...+...|++.+|..+|+.+..+ .|....-..|+..|....
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~---~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER---APGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc---CCCChHHHHHHHHHHHHc
Confidence 3444567889999999998887 4554333222 122356789999999999998654 454444455555555444
Q ss_pred CHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccH
Q 048090 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFEL 387 (447)
Q Consensus 348 ~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 387 (447)
+-..=..+-+++.+.+ + +.. -..++..+....+...
T Consensus 92 ~D~~Wr~~A~evle~~--~-d~~-a~~Lv~~Ll~~~~~~~ 127 (160)
T PF09613_consen 92 GDPSWRRYADEVLESG--A-DPD-ARALVRALLARADLEP 127 (160)
T ss_pred CChHHHHHHHHHHhcC--C-ChH-HHHHHHHHHHhccccc
Confidence 4344444455555554 2 232 2344454444444433
No 319
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=91.86 E-value=0.56 Score=28.48 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHH
Q 048090 372 WGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407 (447)
Q Consensus 372 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 407 (447)
...+..++.+.|++++|.+..+.+++.+|.|..+-.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 455677888899999999999999999998876443
No 320
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.83 E-value=5.2 Score=31.36 Aligned_cols=132 Identities=7% Similarity=-0.042 Sum_probs=70.1
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccC--ChhhHHHHhccCCC
Q 048090 72 KTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL--LIHDAELMFDEIPV 149 (447)
Q Consensus 72 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~ 149 (447)
+.++.+.+.+++|+...+..++..+.+.|++.... ++++.++-+|.......+-.+.... -..-+..++.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 34455556677777777888888877777755433 3444444444443333222221111 1233445555543
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 048090 150 KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215 (447)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 215 (447)
..+..++..+...|++-+|+++.+...... ......++.+..+.+|...-..+++....
T Consensus 90 ---~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ---TAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 235566677777888888887776653221 11223445555555555544444444444
No 321
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=91.80 E-value=0.25 Score=44.75 Aligned_cols=101 Identities=11% Similarity=0.143 Sum_probs=79.4
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCChhhH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhc
Q 048090 304 ISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY-SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382 (447)
Q Consensus 304 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 382 (447)
+......+.++.|..++.++++ +.||-..| ..=..++.+.+++..|+.=+.++++.. |.....|..-+.++...
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhH
Confidence 4455677889999999999884 57864444 333477889999999998888888877 77777788888888888
Q ss_pred CCccHHHHHHHHHhhhCCCchhHHHHH
Q 048090 383 GKFELGKLAAQKALELDPHNVGIYVML 409 (447)
Q Consensus 383 g~~~~a~~~~~~~~~~~~~~~~~~~~l 409 (447)
+.+.+|...|+......|+++.+-..+
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 999999999999999889888654444
No 322
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.67 E-value=0.29 Score=37.51 Aligned_cols=54 Identities=11% Similarity=-0.076 Sum_probs=26.4
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHH
Q 048090 57 VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQA 110 (447)
Q Consensus 57 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 110 (447)
++..+.+.+.+......++.+...+...+....+.++..+++.++.+....+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444455555555555555544433444555555555555554444444444
No 323
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.62 E-value=1.5 Score=35.18 Aligned_cols=76 Identities=12% Similarity=0.027 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHH
Q 048090 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282 (447)
Q Consensus 204 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 282 (447)
+.|.+.|-.+... +.-.++.....|...|. ..+.+++..++.........+..+|+..+..|++.+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~--~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGT--PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCC--CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3455555544444 22234444444444444 4456666666655555544444556666666666666666665553
No 324
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.57 E-value=6.9 Score=32.31 Aligned_cols=29 Identities=3% Similarity=-0.050 Sum_probs=18.1
Q ss_pred HHHHHHHhcCCccHHHHHHHHHhhhCCCc
Q 048090 374 ALLSACHDCGKFELGKLAAQKALELDPHN 402 (447)
Q Consensus 374 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 402 (447)
-....-...+++.+|..+|+++.....+|
T Consensus 159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 159 KVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33444456677777888887776655433
No 325
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.53 E-value=15 Score=36.18 Aligned_cols=194 Identities=12% Similarity=0.002 Sum_probs=105.0
Q ss_pred CCCccHHHHHHHHHhCCChhhHHHHHHHHH-hcCCCCch--hhHHHHHHHh-ccCCchhHHHHHHHHHHHcCCCCchh--
Q 048090 49 RNPLPFNVVISDFCRNGSPLYALKTFSFMH-VHGIFLDT--YALCSSLTAS-TSVKDARFGKQVQAHVTKSGWLSSVF-- 122 (447)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~-~~~~~p~~--~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~-- 122 (447)
.+...|..||. .|+..++-.. ...+.|.. .++..+...+ ....+++.|+..+.+.....-.++..
T Consensus 28 ~~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 34455666655 3455565555 33333332 3445555554 36788899998888775543222221
Q ss_pred ---hHHHHHHHHHccCChhhHHHHhccCCCC--------chhhHHHH-HHHHHhcCCHHHHHHHHHhhhhcC---CCCcH
Q 048090 123 ---VGSALIDLYAKLLLIHDAELMFDEIPVK--------NSVCANAL-LSGYCEAKLWAGGLELVRLMPALG---LDYDH 187 (447)
Q Consensus 123 ---~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~ 187 (447)
....++..+.+.+... |...+++..+. -...+..+ +..+...+++..|.+.++.+...- ..|-.
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 2234556666666555 77666664311 11222222 222333378998998888875532 23444
Q ss_pred hhHHHHHHHH--hcCCcHHHHHHHHHHHHHhhhcC-------CCChhHHHHHHHHH--HhcCChHHHHHHHHhhhh
Q 048090 188 FTLSALLRAC--AGLSAAEFGRQVHAYMIRKCCNL-------GNDVFMQSSLIEMY--GKCGLVTKALQVFNLAGH 252 (447)
Q Consensus 188 ~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~ 252 (447)
..+..++.+. .+.+..+.+.+..+.+.....++ .|...++..+++.+ ...|+++.+...++++..
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555554 34555666777777664432222 33455666666544 456776677666654433
No 326
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.47 E-value=0.31 Score=37.32 Aligned_cols=87 Identities=10% Similarity=-0.015 Sum_probs=66.0
Q ss_pred HHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHH
Q 048090 91 SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170 (447)
Q Consensus 91 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 170 (447)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35677778888999999999999877666788889999999999888999999885433 333566777777888888
Q ss_pred HHHHHHhhhh
Q 048090 171 GLELVRLMPA 180 (447)
Q Consensus 171 a~~~~~~~~~ 180 (447)
+.-++.++..
T Consensus 89 a~~Ly~~~~~ 98 (143)
T PF00637_consen 89 AVYLYSKLGN 98 (143)
T ss_dssp HHHHHHCCTT
T ss_pred HHHHHHHccc
Confidence 8877777643
No 327
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=91.35 E-value=3 Score=31.00 Aligned_cols=45 Identities=11% Similarity=0.176 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHH
Q 048090 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKA 395 (447)
Q Consensus 351 ~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 395 (447)
.+.++|..|...|+.......|......+...|++++|..+++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 777777777777776666666777777777777777777777654
No 328
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.29 E-value=6.4 Score=37.28 Aligned_cols=80 Identities=19% Similarity=0.136 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHH
Q 048090 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376 (447)
Q Consensus 297 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~ 376 (447)
..-|..|.++....+++..|.+-|.+... |..|+-.+...|+.+....+-....+.| . .|.-.
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g--~-----~N~AF 728 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQG--K-----NNLAF 728 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhc--c-----cchHH
Confidence 34455555555555555555555444421 3334444444555444444444444443 1 22223
Q ss_pred HHHHhcCCccHHHHHHH
Q 048090 377 SACHDCGKFELGKLAAQ 393 (447)
Q Consensus 377 ~~~~~~g~~~~a~~~~~ 393 (447)
.++...|++++..+++.
T Consensus 729 ~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 34444555555444443
No 329
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.25 E-value=2 Score=29.66 Aligned_cols=62 Identities=13% Similarity=0.208 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048090 278 FKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341 (447)
Q Consensus 278 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 341 (447)
.-++.+-++.+....+.|++....+.+++|.+.+++..|.++|+-++.+.+ .+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 345566666777777888888888888888888888888888887765422 24445655553
No 330
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.18 E-value=7.9 Score=32.24 Aligned_cols=207 Identities=14% Similarity=0.049 Sum_probs=94.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHH
Q 048090 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234 (447)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 234 (447)
|..-..+|....++++|..-+.+..+. ..-+...| -....++.|.-+.+++.+. +.-...++.-...|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~kl----sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKL----SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHH
Confidence 334445555566666665555444321 01111111 1112334444444444432 12233455555666
Q ss_pred HhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHhc
Q 048090 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN---GT--KPDEVAFVTVISACSH 309 (447)
Q Consensus 235 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~--~p~~~~~~~ll~~~~~ 309 (447)
..+|.++-|-..+++...+. ++.++++|+++|++...- +- +--...+..+-+.+.+
T Consensus 102 ~E~GspdtAAmaleKAak~l-------------------env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKAL-------------------ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR 162 (308)
T ss_pred HHhCCcchHHHHHHHHHHHh-------------------hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence 66666666666665544432 223344444444443221 00 0011123333344555
Q ss_pred cCcHHHHHHHHHHHHHh---cCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCchHhHHHHHHHHHhcC
Q 048090 310 TGQVKLGIEYFEWMVHD---YKLEPG-PEHYSCLVDLLCRAGELDKAWKLINEMLDRG--HGSSSVSMWGALLSACHDCG 383 (447)
Q Consensus 310 ~~~~~~a~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g 383 (447)
...+++|-..+.+-..- ..--++ -..|...|-.+.-..++..|...+++--..+ ..|.+..+...|+.+| ..|
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~g 241 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEG 241 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccC
Confidence 55555555444332110 011122 2234445555666667777777777633221 2255666677777776 446
Q ss_pred CccHHHHHHH
Q 048090 384 KFELGKLAAQ 393 (447)
Q Consensus 384 ~~~~a~~~~~ 393 (447)
+.+++..++.
T Consensus 242 D~E~~~kvl~ 251 (308)
T KOG1585|consen 242 DIEEIKKVLS 251 (308)
T ss_pred CHHHHHHHHc
Confidence 6666655543
No 331
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.15 E-value=0.59 Score=26.38 Aligned_cols=28 Identities=25% Similarity=0.165 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 404 GIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 404 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
.+++.|+..|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888877754
No 332
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.13 E-value=17 Score=35.95 Aligned_cols=97 Identities=10% Similarity=-0.109 Sum_probs=57.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhC-C--CchhHHHHHHHHHHhc
Q 048090 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD-P--HNVGIYVMLSNLYAKF 416 (447)
Q Consensus 340 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~--~~~~~~~~l~~~~~~~ 416 (447)
+..+...|+...|...+..+.... +......+.....+.|.++.+..........+ . .-+..|...+..+.+.
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~----~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~ 489 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASR----SKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSG 489 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHH
Confidence 345667889999998888887752 22335666666777888888877665443321 0 1122355555555555
Q ss_pred CChHHHHHHHHHHHHcCCCCCCcc
Q 048090 417 CMWDEIGQLRELMKEKGLKKDVGC 440 (447)
Q Consensus 417 g~~~~A~~~~~~m~~~~~~p~~~~ 440 (447)
-..+.++-.----.++++.|++..
T Consensus 490 ~~v~~~lv~ai~rqES~f~p~a~S 513 (644)
T PRK11619 490 KGIPQSYAMAIARQESAWNPKARS 513 (644)
T ss_pred cCCCHHHHHHHHHHhcCCCCCCcc
Confidence 556655432222346777777543
No 333
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.12 E-value=1.2 Score=38.13 Aligned_cols=101 Identities=15% Similarity=0.057 Sum_probs=71.3
Q ss_pred cCCCCchhhHHHHHHHHHccCChhhHHHHhccCCC-Cc-----hhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHh
Q 048090 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV-KN-----SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF 188 (447)
Q Consensus 115 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 188 (447)
.|.+....+...++.......+++.++..+-++.. |+ ..+-.+.++.+ -.-++++++.++..=++-|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 34455555555566555556777777777665542 11 11222333333 3347889999999989999999999
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 048090 189 TLSALLRACAGLSAAEFGRQVHAYMIRK 216 (447)
Q Consensus 189 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 216 (447)
+++.+|+.+.+.+++..|..+...|+..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999988888776
No 334
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.03 E-value=5.6 Score=30.26 Aligned_cols=51 Identities=10% Similarity=0.051 Sum_probs=36.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 048090 272 YGRNGYFKEVIKLYEAMLMNGTKPDE---VAFVTVISACSHTGQVKLGIEYFEWMVHD 326 (447)
Q Consensus 272 ~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 326 (447)
-...++++++..++..|.- +.|+. .+|-.. .+...|++.+|..+|+.+..+
T Consensus 20 aL~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRV--LRPNLKELDMFDGW--LLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHhcCCHHHHHHHHHHHHH--hCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhcc
Confidence 3457889999999999877 34543 344333 356789999999999998754
No 335
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.72 E-value=20 Score=35.98 Aligned_cols=200 Identities=16% Similarity=0.138 Sum_probs=108.1
Q ss_pred HHhcCChHHHHHHHHhhhhhccc-CCCcch---hhHHHHHH-HHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHH
Q 048090 234 YGKCGLVTKALQVFNLAGHRLEG-EINKDV---VLWTSMLG-VYGRNGYFKEVIKLYEAMLMN----GTKPDEVAFVTVI 304 (447)
Q Consensus 234 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~---~~~~~l~~-~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~ll 304 (447)
.....++++|..++.++...... +..+.. ..|+.+-. .....|+++.|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34577899999888876554221 111111 13444332 234568889999888887654 1223445566666
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCChhh---HHHHH--HHHHHcCCHH--HHHHHHHHHHhC--CCCCCc---hHhH
Q 048090 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEH---YSCLV--DLLCRAGELD--KAWKLINEMLDR--GHGSSS---VSMW 372 (447)
Q Consensus 305 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~--~~~~~~g~~~--~A~~~~~~~~~~--~~~p~~---~~~~ 372 (447)
.+..-.|++++|..+.+...+. .-.-+... |..+. ..+...|+.. +.+..+...... .-.|.. ..++
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 6777789999998887766543 11223222 23332 2344566332 222223322211 111221 1223
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHhhhC----CCch---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048090 373 GALLSACHDCGKFELGKLAAQKALELD----PHNV---GIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437 (447)
Q Consensus 373 ~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 437 (447)
..+..++.+ ++.+..-.....+.. |... ..+..|+..+...|+.++|...+.++......++
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 344444444 555554444444432 3322 2234788888999999999999888877555544
No 336
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.68 E-value=0.44 Score=23.81 Aligned_cols=23 Identities=17% Similarity=-0.013 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH
Q 048090 405 IYVMLSNLYAKFCMWDEIGQLRE 427 (447)
Q Consensus 405 ~~~~l~~~~~~~g~~~~A~~~~~ 427 (447)
....++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566777777777777776654
No 337
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.63 E-value=6.9 Score=30.64 Aligned_cols=132 Identities=11% Similarity=0.074 Sum_probs=73.0
Q ss_pred HhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHH--HHHhccC
Q 048090 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV-AFVTVI--SACSHTG 311 (447)
Q Consensus 235 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll--~~~~~~~ 311 (447)
.+.+..++|+.-|..+.+..-.+ -| +.....+.....+.|+...|...|+++-.....|-.. -...|= -.+...|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~-Yp-vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGS-YP-VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCc-ch-HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 45566677777776554421111 11 1122223344566777777888887776654344322 111111 1345677
Q ss_pred cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCch
Q 048090 312 QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369 (447)
Q Consensus 312 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 369 (447)
.++......+-+..+ +-+.-...-..|.-+-.+.|++..|...|..+......|.+.
T Consensus 147 sy~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprni 203 (221)
T COG4649 147 SYDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNI 203 (221)
T ss_pred cHHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHH
Confidence 777777766666433 222234444566666678888888888888887765555444
No 338
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.50 E-value=4.6 Score=28.34 Aligned_cols=60 Identities=13% Similarity=0.251 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048090 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341 (447)
Q Consensus 280 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 341 (447)
+..+-++.+....+.|++....+.+++|.+.+++..|.++|+-++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5566677777778889999999999999999999999999998876633 33336776664
No 339
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.47 E-value=7.2 Score=30.57 Aligned_cols=32 Identities=9% Similarity=0.097 Sum_probs=17.1
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH
Q 048090 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315 (447)
Q Consensus 284 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 315 (447)
.++.+.+.++.|+...+..+++.+.+.|++..
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34444445555555555555555555555433
No 340
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.39 E-value=8.7 Score=36.45 Aligned_cols=148 Identities=16% Similarity=0.056 Sum_probs=73.4
Q ss_pred cCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHH
Q 048090 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213 (447)
Q Consensus 134 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 213 (447)
.|+++.|..++..++++ ..+.++..+-+.|-.++|+++ .+|+.. -.....+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhh
Confidence 45666666655555532 233444445555555555443 122211 112223556666666554332
Q ss_pred HHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048090 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293 (447)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 293 (447)
.+..-|..|..+....|++..|.+.|.... -|..|+-.+...|+.+....+-....+.|.
T Consensus 664 --------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 664 --------NSEVKWRQLGDAALSAGELPLASECFLRAR------------DLGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred --------cchHHHHHHHHHHhhcccchhHHHHHHhhc------------chhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 134456666666666666666666665321 134455555555665555555555554442
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 048090 294 KPDEVAFVTVISACSHTGQVKLGIEYFEW 322 (447)
Q Consensus 294 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 322 (447)
. |. ..-++...|+++++.+++..
T Consensus 724 ~-N~-----AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 724 N-NL-----AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred c-ch-----HHHHHHHcCCHHHHHHHHHh
Confidence 1 21 22234455666666665543
No 341
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.30 E-value=3.2 Score=33.40 Aligned_cols=75 Identities=13% Similarity=-0.087 Sum_probs=49.5
Q ss_pred HHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcC-CCChhHHHHHHHHHHhcCChHHHH
Q 048090 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL-GNDVFMQSSLIEMYGKCGLVTKAL 244 (447)
Q Consensus 169 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 244 (447)
+.|.+.|-.+...+.--++.....+...|. ..+.+++..++..+......- .+|+..+.+|+..|.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 566777777766654445544444444444 567777887777777753333 667788888888888888877764
No 342
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.21 E-value=20 Score=35.30 Aligned_cols=165 Identities=10% Similarity=-0.056 Sum_probs=77.4
Q ss_pred HHHHHhCCChhhHHHHHHHHHhcCCCC---chhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHcc
Q 048090 58 ISDFCRNGSPLYALKTFSFMHVHGIFL---DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKL 134 (447)
Q Consensus 58 ~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 134 (447)
++.+.+.+.+++|++.-+.... ..| -.......|..+...|+++.|-...-.|... +..-|.--+..++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 5666667777777766554433 222 1233445555556666666666666655532 334444444444444
Q ss_pred CChhhHHHHhccCCC-CchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHH
Q 048090 135 LLIHDAELMFDEIPV-KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213 (447)
Q Consensus 135 g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 213 (447)
++......++=.-+. -+...|..++..+.. .+... |.+..+. -+...|..+...-+ +-.+.
T Consensus 437 ~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~----F~e~i~~---Wp~~Lys~l~iisa----------~~~q~ 498 (846)
T KOG2066|consen 437 DQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKG----FLELIKE---WPGHLYSVLTIISA----------TEPQI 498 (846)
T ss_pred cccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHH----HHHHHHh---CChhhhhhhHHHhh----------cchHH
Confidence 444333222211111 245566666666655 22222 2222211 11222222211100 11111
Q ss_pred HHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhh
Q 048090 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLA 250 (447)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 250 (447)
.+. ..+......|+..|...+++.+|..++-..
T Consensus 499 ~q~----Se~~~L~e~La~LYl~d~~Y~~Al~~ylkl 531 (846)
T KOG2066|consen 499 KQN----SESTALLEVLAHLYLYDNKYEKALPIYLKL 531 (846)
T ss_pred Hhh----ccchhHHHHHHHHHHHccChHHHHHHHHhc
Confidence 111 112233344888888889999998888643
No 343
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.18 E-value=12 Score=32.75 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhCCCCC
Q 048090 351 KAWKLINEMLDRGHGS 366 (447)
Q Consensus 351 ~A~~~~~~~~~~~~~p 366 (447)
.+.++++.+.+.|+++
T Consensus 200 r~~~l~~~l~~~~~ki 215 (297)
T PF13170_consen 200 RVIELYNALKKNGVKI 215 (297)
T ss_pred HHHHHHHHHHHcCCcc
Confidence 4555555555555544
No 344
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.05 E-value=2.5 Score=29.22 Aligned_cols=50 Identities=14% Similarity=0.013 Sum_probs=38.0
Q ss_pred CHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 048090 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216 (447)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 216 (447)
|.=++.+-++.+....+.|++....+.+++|.+.+++..|.++++.+...
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455666666666777888888888888888888888888888877654
No 345
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=89.96 E-value=0.57 Score=24.08 Aligned_cols=26 Identities=31% Similarity=0.225 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHhhh
Q 048090 373 GALLSACHDCGKFELGKLAAQKALEL 398 (447)
Q Consensus 373 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 398 (447)
..++..+...|+++.|...++++++.
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 33444444444444444444444443
No 346
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.88 E-value=0.6 Score=24.65 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 405 IYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 405 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
++..++.++.+.|++++|.+.|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4667888999999999999999999874
No 347
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.80 E-value=4 Score=35.17 Aligned_cols=48 Identities=13% Similarity=0.107 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 048090 277 YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324 (447)
Q Consensus 277 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 324 (447)
++++++.++..=+..|+-||..++..+++.+.+.+++..|.++...|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344555555555555555566666666666655555555555554444
No 348
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.70 E-value=1.1 Score=23.90 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 404 GIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 404 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
.+|..++..|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999999876
No 349
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.64 E-value=3.6 Score=28.84 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=40.1
Q ss_pred HHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHH
Q 048090 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232 (447)
Q Consensus 170 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (447)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++++.+... ..+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K---~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK---CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---ccChHHHHHHHHH
Confidence 45566666777778888888889999999999999999999887776 2333335655543
No 350
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.59 E-value=0.72 Score=26.01 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=21.0
Q ss_pred HhHHHHHHHHHhcCCccHHHHHHHHHhhh
Q 048090 370 SMWGALLSACHDCGKFELGKLAAQKALEL 398 (447)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 398 (447)
.+++.|...|...|++++|..+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35677888888888888888888877663
No 351
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.33 E-value=7.3 Score=32.40 Aligned_cols=75 Identities=19% Similarity=0.089 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHH
Q 048090 335 HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411 (447)
Q Consensus 335 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 411 (447)
.+...-+++...|++-++++...+.+... |.+..+|..-..+.+..=+.++|..-|.++++++|.-..+...=++
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~--~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr 306 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHH--PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELR 306 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHH
Confidence 34555677788899999999999999887 8899999988888888889999999999999999875544444333
No 352
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.26 E-value=13 Score=31.89 Aligned_cols=152 Identities=11% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhh-cCCCCcHhhHHHHHHHHhc-CCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHH
Q 048090 155 ANALLSGYCEAKLWAGGLELVRLMPA-LGLDYDHFTLSALLRACAG-LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232 (447)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (447)
|..|+. ++....+|+++|+.... ..+--|..+...+++.... .+..-.|.--+-.......+-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Q ss_pred HHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH-----HHhCCCCCCHHHHHHHHHHH
Q 048090 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA-----MLMNGTKPDEVAFVTVISAC 307 (447)
Q Consensus 233 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-----m~~~~~~p~~~~~~~ll~~~ 307 (447)
.+++.+++.+-.++++ ......+...|...|..+|......|+..-...+.++ +.+.++..+...-..+-+.+
T Consensus 211 ~L~~~~dW~kl~~fW~--~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWE--QCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHhcccHHHHHHHHH--HhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Q ss_pred hccC
Q 048090 308 SHTG 311 (447)
Q Consensus 308 ~~~~ 311 (447)
...|
T Consensus 289 ~~vd 292 (292)
T PF13929_consen 289 KKVD 292 (292)
T ss_pred HhcC
No 353
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.80 E-value=47 Score=37.58 Aligned_cols=318 Identities=12% Similarity=-0.021 Sum_probs=160.0
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhcCC--CCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHc
Q 048090 56 VVISDFCRNGSPLYALKTFSFMHVHGI--FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133 (447)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 133 (447)
.|..+-.+.+.+.+|+..|+.-..... ......|..+...|...++++...-+..... .+...+. -|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHH-HHHHHHh
Confidence 455566778899999999988411111 1122334444448888899888777665411 1222333 3444567
Q ss_pred cCChhhHHHHhccCCCC--c-hhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHH-HHHHhcCCcHHHHHHH
Q 048090 134 LLLIHDAELMFDEIPVK--N-SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL-LRACAGLSAAEFGRQV 209 (447)
Q Consensus 134 ~g~~~~a~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~ 209 (447)
.|+++.|...|+.+.+. + ..+++-++......|.++.++-..+-.... ..+....++++ +.+-=+.++++.....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 89999999999998743 3 556777777777777887777655555433 12333333322 2233456667666665
Q ss_pred HHHHHHhhhcCCCChhHHHH--HHHHHHhcCChH--HHHHHHHhhhhhc-----ccCCC-cchhhHHHHHHHHHhcCCHH
Q 048090 210 HAYMIRKCCNLGNDVFMQSS--LIEMYGKCGLVT--KALQVFNLAGHRL-----EGEIN-KDVVLWTSMLGVYGRNGYFK 279 (447)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~--~A~~~~~~~~~~~-----~~~~~-~~~~~~~~l~~~~~~~g~~~ 279 (447)
.. .. +..+|.. ++....+..+-| .-.+.++.+.... ..+.. .-...|..++..+.-..
T Consensus 1541 l~---~~------n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e--- 1608 (2382)
T KOG0890|consen 1541 LS---DR------NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE--- 1608 (2382)
T ss_pred hh---cc------cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH---
Confidence 44 11 1112221 222222211111 1111222111110 00000 11122333333222111
Q ss_pred HHHHHHHHHHhCCCCCCH------HHHHHHHHHHhccCcHHHHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHHcCC
Q 048090 280 EVIKLYEAMLMNGTKPDE------VAFVTVISACSHTGQVKLGIEYFEWMVHDY----KLEP-GPEHYSCLVDLLCRAGE 348 (447)
Q Consensus 280 ~a~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~ 348 (447)
-....+... ++.++. .-|..-+..-....+..+-+--+++..-.. +..- -..+|....+...+.|+
T Consensus 1609 -l~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~ 1685 (2382)
T KOG0890|consen 1609 -LENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH 1685 (2382)
T ss_pred -HHHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc
Confidence 111111111 122221 112112221111112222221222211110 1111 25678888888888999
Q ss_pred HHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhC
Q 048090 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399 (447)
Q Consensus 349 ~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 399 (447)
++.|...+-.+.+.+ ++ .++.-.+.-+...|+...|..++++.++..
T Consensus 1686 ~q~A~nall~A~e~r--~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1686 LQRAQNALLNAKESR--LP--EIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHhhhhcc--cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 999998887777766 32 336778888889999999999999998754
No 354
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=88.79 E-value=6.3 Score=27.54 Aligned_cols=87 Identities=11% Similarity=-0.117 Sum_probs=58.0
Q ss_pred chhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 048090 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180 (447)
Q Consensus 101 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (447)
..++|.-+-+.+...+-. ...+--+-+..+...|++++|..+.+.+..||...|-+|-.. +.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 456666666666654311 222223334567788999999999998888888888777654 66777777777777777
Q ss_pred cCCCCcHhhHH
Q 048090 181 LGLDYDHFTLS 191 (447)
Q Consensus 181 ~~~~~~~~~~~ 191 (447)
.| .|....|.
T Consensus 97 sg-~p~lq~Fa 106 (115)
T TIGR02508 97 SG-DPRLQTFV 106 (115)
T ss_pred CC-CHHHHHHH
Confidence 66 55555554
No 355
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=88.53 E-value=6.3 Score=27.22 Aligned_cols=53 Identities=13% Similarity=0.079 Sum_probs=26.6
Q ss_pred CCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCC--chhHHHHHHHHHHhcCC
Q 048090 366 SSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH--NVGIYVMLSNLYAKFCM 418 (447)
Q Consensus 366 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 418 (447)
|+|......+...+...|+++.|.+.+-++++.++. +...-..|+..+.-.|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 555555555555556666666665555555555433 34444555555555444
No 356
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.43 E-value=30 Score=34.82 Aligned_cols=226 Identities=12% Similarity=-0.075 Sum_probs=120.8
Q ss_pred hcCCcHHHHHHHHHHHHHhhhcCCCChh-------HHHHHH-HHHHhcCChHHHHHHHHhhhhhcccC-CCcchhhHHHH
Q 048090 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVF-------MQSSLI-EMYGKCGLVTKALQVFNLAGHRLEGE-INKDVVLWTSM 268 (447)
Q Consensus 198 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~l 268 (447)
....++++|..+..++...- ..|+.. .++.+- ......|++++|.++-+......... ..+.+..+..+
T Consensus 426 ~s~~r~~ea~~li~~l~~~l--~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFL--KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHccChHHHHHHHHHHHHHh--CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 45678899999998887762 122211 233332 23445788999999888666553222 23345566777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHH--HHHhccCc--HHHHHHHHHHHHHhcCC-CC----ChhhH
Q 048090 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEV---AFVTVI--SACSHTGQ--VKLGIEYFEWMVHDYKL-EP----GPEHY 336 (447)
Q Consensus 269 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~ll--~~~~~~~~--~~~a~~~~~~~~~~~~~-~~----~~~~~ 336 (447)
..+..-.|++++|..+..+..+..-.-+.. .+..+. ..+..+|. ..+....|......+.. +| -..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 778888999999998887765542222222 222222 23455663 33333344443332111 11 12334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH----HHhCCCCCCchH-hHHHHHHHHHhcCCccHHHHHHHHHhhhCCCc--hhH----
Q 048090 337 SCLVDLLCRAGELDKAWKLINE----MLDRGHGSSSVS-MWGALLSACHDCGKFELGKLAAQKALELDPHN--VGI---- 405 (447)
Q Consensus 337 ~~l~~~~~~~g~~~~A~~~~~~----~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~---- 405 (447)
..+..++.+ .+.+..-... .......|-+.. .+..|+......|+.++|...+.++......+ ...
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 444555544 3333332222 222221121221 12367888889999999999998887754222 111
Q ss_pred -HHHHHHHHHhcCChHHHHHHHHH
Q 048090 406 -YVMLSNLYAKFCMWDEIGQLREL 428 (447)
Q Consensus 406 -~~~l~~~~~~~g~~~~A~~~~~~ 428 (447)
+..-...-...|+.+.+.....+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 12222223457888877665544
No 357
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.31 E-value=4 Score=33.23 Aligned_cols=78 Identities=10% Similarity=-0.096 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHH
Q 048090 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233 (447)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 233 (447)
.+.-++.+.+.++..+++...+.-.+.. +.|..+-..++..++-.|+|++|..-++..-...+...+....|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445566777777888877777666552 33445555667777778888888777776666544555556666666654
No 358
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.14 E-value=22 Score=32.93 Aligned_cols=92 Identities=10% Similarity=0.121 Sum_probs=62.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC
Q 048090 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348 (447)
Q Consensus 269 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 348 (447)
...+...|.++.+...+...... +.....+..++++...+.|+++.|...-.-|... .+. +......-.-..-..|-
T Consensus 330 ~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~-eie-~~ei~~iaa~sa~~l~~ 406 (831)
T PRK15180 330 SVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN-EIE-DEEVLTVAAGSADALQL 406 (831)
T ss_pred HHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcc-ccC-ChhheeeecccHHHHhH
Confidence 34456778888888887765443 3445677888888888889999988888877754 222 23333222333445677
Q ss_pred HHHHHHHHHHHHhCC
Q 048090 349 LDKAWKLINEMLDRG 363 (447)
Q Consensus 349 ~~~A~~~~~~~~~~~ 363 (447)
++++...+++....+
T Consensus 407 ~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 407 FDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHHhccC
Confidence 888888888887665
No 359
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.34 E-value=14 Score=29.73 Aligned_cols=93 Identities=10% Similarity=-0.013 Sum_probs=48.9
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHh
Q 048090 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274 (447)
Q Consensus 195 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 274 (447)
..+...+++++|...++........-.....+-..|.......|.+|+|+..++.... ..-.......-...+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-----~~w~~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE-----ESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-----ccHHHHHHHHhhhHHHH
Confidence 3456677777777777766643100001112223345556667777777777762211 00011112233456667
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 048090 275 NGYFKEVIKLYEAMLMNG 292 (447)
Q Consensus 275 ~g~~~~a~~~~~~m~~~~ 292 (447)
.|+-++|..-|++....+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 777777777777776654
No 360
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=87.22 E-value=1.6 Score=22.80 Aligned_cols=29 Identities=24% Similarity=0.419 Sum_probs=19.6
Q ss_pred CCccHHHHHHHHHhhhCCCchhHHHHHHH
Q 048090 383 GKFELGKLAAQKALELDPHNVGIYVMLSN 411 (447)
Q Consensus 383 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 411 (447)
|+.+.+..+|++++...|.++.+|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 35566777777777777767777766654
No 361
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.08 E-value=3.7 Score=38.60 Aligned_cols=100 Identities=21% Similarity=0.114 Sum_probs=69.5
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccH
Q 048090 310 TGQVKLGIEYFEWMVHDYKLEPG--PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFEL 387 (447)
Q Consensus 310 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 387 (447)
.|+...|..-+..... ..|- ....-.|.....+.|..-.|-.++...+... -..+.++..+++++....+++.
T Consensus 620 ~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--SSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred cCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--ccCchHHHhcchhHHHHhhhHH
Confidence 5677777777666653 2442 2334455666667777777888777776665 3455668888888888888888
Q ss_pred HHHHHHHHhhhCCCchhHHHHHHHHHH
Q 048090 388 GKLAAQKALELDPHNVGIYVMLSNLYA 414 (447)
Q Consensus 388 a~~~~~~~~~~~~~~~~~~~~l~~~~~ 414 (447)
|.+.++.+.+..|+++.+-+.|...-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 888888888888888877777654433
No 362
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=86.99 E-value=22 Score=31.71 Aligned_cols=78 Identities=9% Similarity=0.055 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHh---cCChHHHHHHH
Q 048090 350 DKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAK---FCMWDEIGQLR 426 (447)
Q Consensus 350 ~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~ 426 (447)
+.-+.+++++++.+ |.+...+..++..+.+..+.+...+-+++++...|.+...|..++..... .-.++....+|
T Consensus 48 E~klsilerAL~~n--p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN--PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 44555666666664 66666666666666666666666666777766666666666666654433 12344444444
Q ss_pred HHH
Q 048090 427 ELM 429 (447)
Q Consensus 427 ~~m 429 (447)
.+.
T Consensus 126 ~~~ 128 (321)
T PF08424_consen 126 EKC 128 (321)
T ss_pred HHH
Confidence 433
No 363
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=86.75 E-value=22 Score=31.63 Aligned_cols=120 Identities=11% Similarity=0.056 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhc---CCccHHHH
Q 048090 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC---GKFELGKL 390 (447)
Q Consensus 314 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~ 390 (447)
+.-+.+++++++. -+.+...+..++..+.+..+.++..+-+++++... |.+...|...+...... -.++....
T Consensus 48 E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 48 ERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 4455666766654 12346666667777777777777777777777765 66777777776665542 24556666
Q ss_pred HHHHHhhhC------C-----C-------chhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC
Q 048090 391 AAQKALELD------P-----H-------NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL-KKD 437 (447)
Q Consensus 391 ~~~~~~~~~------~-----~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~ 437 (447)
+|.+.++.- . + -..++..+......+|..+.|..+++.+.+.++ .|+
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 666555421 0 0 122445555566789999999999999988765 444
No 364
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.75 E-value=1.1 Score=25.95 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=14.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 048090 408 MLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 408 ~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
.|+.+|...|+.+.|.+++++...
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 355566666666666666666654
No 365
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=86.66 E-value=11 Score=28.10 Aligned_cols=75 Identities=13% Similarity=0.134 Sum_probs=43.4
Q ss_pred CCChhhHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchh
Q 048090 330 EPGPEHYSCLVDLLCRAGE---LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404 (447)
Q Consensus 330 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 404 (447)
.++..+--.+..++.+..+ ..+-+.+++++.+..-..........|.-++.+.++++++.++.+..++.+|+|..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 4444454555555555443 44555666666652211112223445666777777777777777777777776654
No 366
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=86.38 E-value=2.3 Score=36.51 Aligned_cols=81 Identities=12% Similarity=0.186 Sum_probs=57.8
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHH-HHHHHHhcCCccHHHHHHHHHhhhCCCchhHHH
Q 048090 329 LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA-LLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407 (447)
Q Consensus 329 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 407 (447)
+.-|+..|...+.-..+.|.+.+.-.++.+..... |.++..|.. -..-+...++++.+..+|.+.++.+|.++.+|.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh--P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH--PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 34456666666665566677777888888888777 777776644 334455677888888888888888888888776
Q ss_pred HHHH
Q 048090 408 MLSN 411 (447)
Q Consensus 408 ~l~~ 411 (447)
...+
T Consensus 181 eyfr 184 (435)
T COG5191 181 EYFR 184 (435)
T ss_pred HHHH
Confidence 6554
No 367
>PRK10941 hypothetical protein; Provisional
Probab=86.11 E-value=4.9 Score=34.50 Aligned_cols=60 Identities=18% Similarity=0.082 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 372 WGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 372 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
.+.+-.+|.+.++++.|.++.+.++...|+++.-+.--+-.|.+.|.+..|..=++...+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 566777899999999999999999999999999899899999999999999998888876
No 368
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=85.26 E-value=5.1 Score=27.65 Aligned_cols=45 Identities=13% Similarity=0.095 Sum_probs=37.1
Q ss_pred HHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 048090 389 KLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433 (447)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 433 (447)
...+++.++.+|.|......++..+...|++++|++.+-++.+..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 456777888899999999999999999999999999988887653
No 369
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=85.07 E-value=1.7 Score=35.47 Aligned_cols=55 Identities=27% Similarity=0.423 Sum_probs=28.2
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCC
Q 048090 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401 (447)
Q Consensus 345 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 401 (447)
+.++.+.|.+++.+....- |.....|..+...-.+.|+++.|.+.|++.++++|+
T Consensus 7 ~~~D~~aaaely~qal~la--p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 7 ESGDAEAAAELYNQALELA--PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred ccCChHHHHHHHHHHhhcC--chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 4445555555555554433 444555555555555555555555555555554443
No 370
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=84.61 E-value=2.4 Score=38.80 Aligned_cols=106 Identities=11% Similarity=0.101 Sum_probs=76.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHH
Q 048090 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF-VTVISACSHTGQVKLGIEYFEWMVHDYKLEPG-PEHYSCLVDLLCR 345 (447)
Q Consensus 268 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 345 (447)
-+..+.+.+.++.|..++.+.++ ..||...| ..-..++.+.+++..|+.=+.++.+. .|+ ...|-.=..++.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMA 84 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHh
Confidence 34566778899999999999998 46755444 33447888999999999888888754 454 5555555566777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHh
Q 048090 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381 (447)
Q Consensus 346 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 381 (447)
.+.+.+|+..|+...... |++.. +...+.-|-.
T Consensus 85 l~~~~~A~~~l~~~~~l~--Pnd~~-~~r~~~Ec~~ 117 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKKLA--PNDPD-ATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHHhhhcC--cCcHH-HHHHHHHHHH
Confidence 788888888888887765 87776 5555555544
No 371
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.22 E-value=46 Score=32.99 Aligned_cols=138 Identities=8% Similarity=-0.081 Sum_probs=79.3
Q ss_pred CcchHHHhhccCCCCC-----CccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHH
Q 048090 35 NLGTLTNCLKFLNPRN-----PLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109 (447)
Q Consensus 35 ~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 109 (447)
.+++|+...+.....- ...+...|..+.-.|+++.|-...-.|... +..-|...+..+...++......+
T Consensus 371 ~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~Ia~~- 445 (846)
T KOG2066|consen 371 KYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTDIAPY- 445 (846)
T ss_pred HHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccchhhcc-
Confidence 3777777776654321 235778888888899999998888888653 445555555555555554432221
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCC--------------------CCchhhHHHHHHHHHhcCCHH
Q 048090 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP--------------------VKNSVCANALLSGYCEAKLWA 169 (447)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~~ 169 (447)
+.......++..|..++..+.. .+...-.++..+-+ ..+...-..|+..|...+++.
T Consensus 446 --lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~ 522 (846)
T KOG2066|consen 446 --LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYE 522 (846)
T ss_pred --CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChH
Confidence 1111111345566666665555 32222222222211 012233445888888899999
Q ss_pred HHHHHHHhhhh
Q 048090 170 GGLELVRLMPA 180 (447)
Q Consensus 170 ~a~~~~~~~~~ 180 (447)
.|++++-..++
T Consensus 523 ~Al~~ylklk~ 533 (846)
T KOG2066|consen 523 KALPIYLKLQD 533 (846)
T ss_pred HHHHHHHhccC
Confidence 99988877764
No 372
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.22 E-value=43 Score=32.61 Aligned_cols=180 Identities=14% Similarity=0.081 Sum_probs=91.2
Q ss_pred HHHHHHHHHhhhhcCCCCcHhhHHHHHHH---HhcCCcHHHHHHHHHHHHH-------hhhcCCCChhHHHHHHHHHHhc
Q 048090 168 WAGGLELVRLMPALGLDYDHFTLSALLRA---CAGLSAAEFGRQVHAYMIR-------KCCNLGNDVFMQSSLIEMYGKC 237 (447)
Q Consensus 168 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~ 237 (447)
...|.+.++...+.|. .........+.. .....+.+.|..+++.+.+ . + .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~--~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATK--G---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhh--c---CCccccHHHHHHhcC
Confidence 4567777777766552 222112122221 3355678888888888766 3 2 333455666666664
Q ss_pred C-----ChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-
Q 048090 238 G-----LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR---NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS- 308 (447)
Q Consensus 238 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~- 308 (447)
. +.+.|..++.+..+. ..|+.... +...+.. ..+...|.++|......|.. +..-+..+.....
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~----g~~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAEL----GNPDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGL 374 (552)
T ss_pred CCCccccHHHHHHHHHHHHhc----CCchHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCC
Confidence 3 566688888765443 33333322 2222222 23567888888888777633 2222211111111
Q ss_pred -ccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048090 309 -HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRG 363 (447)
Q Consensus 309 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 363 (447)
-..+.+.|..++.+.... + .|...--...+..+.. ++.+.+.-.+..+...+
T Consensus 375 gv~r~~~~A~~~~k~aA~~-g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEK-G-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CcCCCHHHHHHHHHHHHHc-c-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 234677777777777665 4 2221111122222223 55555555555554444
No 373
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=84.09 E-value=40 Score=32.20 Aligned_cols=184 Identities=11% Similarity=-0.044 Sum_probs=109.7
Q ss_pred cHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhH
Q 048090 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265 (447)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 265 (447)
+..+|..-+.--...|+.+.+.-+|+...-. +..=...|-..+.-....|+.+.|..++....+. ..++....
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~---cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i----~~k~~~~i 368 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP---CALYDEFWIKYARWMESSGDVSLANNVLARACKI----HVKKTPII 368 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH---HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh----cCCCCcHH
Confidence 3456766777777888888888888877553 2223344555555555558888888877755443 23333333
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHH---HHHHHHHhcCCCCChhhHHHHH
Q 048090 266 TSMLGVYG-RNGYFKEVIKLYEAMLMNGTKPDEV-AFVTVISACSHTGQVKLGIE---YFEWMVHDYKLEPGPEHYSCLV 340 (447)
Q Consensus 266 ~~l~~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~l~ 340 (447)
..+-..+. ..|++..|..+++.+...- |+.. .-..-+....+.|+.+.+.. ++...... .-+......+.
T Consensus 369 ~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~---~~~~~i~~~l~ 443 (577)
T KOG1258|consen 369 HLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG---KENNGILEKLY 443 (577)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc---ccCcchhHHHH
Confidence 33333344 3578999999999987763 5432 22222334456677776663 33322211 22222222222
Q ss_pred HH-----HHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcC
Q 048090 341 DL-----LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383 (447)
Q Consensus 341 ~~-----~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 383 (447)
-- +.-.++.+.|..++.++.... |++...|..++..+...+
T Consensus 444 ~~~~r~~~~i~~d~~~a~~~l~~~~~~~--~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 444 VKFARLRYKIREDADLARIILLEANDIL--PDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhcC--CccHHHHHHHHHHHHhCC
Confidence 21 234678889999999988765 778777888888777665
No 374
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=84.01 E-value=45 Score=32.64 Aligned_cols=76 Identities=13% Similarity=0.172 Sum_probs=29.4
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048090 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360 (447)
Q Consensus 282 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 360 (447)
....+.+..+-...+......++..|.+.|-.+.|..+.+.+-.+ - ....-|..-+..+.++|+...+..+.+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~-~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQR-L--LKEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH-H--HHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-H--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333444443323335555667777777777777777777766443 1 112223333444455555554444444433
No 375
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=81.99 E-value=19 Score=26.96 Aligned_cols=64 Identities=13% Similarity=-0.008 Sum_probs=48.3
Q ss_pred chHhHHHHHHHHHhcCC---ccHHHHHHHHHhhhC-CC-chhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 368 SVSMWGALLSACHDCGK---FELGKLAAQKALELD-PH-NVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 368 ~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
...+-..+..++.+..+ ..+...+++...+.. |. .......|+-++.+.|+++.+..+.+.+.+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 34446677888877664 556778999988744 43 455677778899999999999999988876
No 376
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=81.85 E-value=71 Score=33.41 Aligned_cols=257 Identities=9% Similarity=-0.015 Sum_probs=152.8
Q ss_pred HHhhccCCCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCC
Q 048090 40 TNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLS 119 (447)
Q Consensus 40 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 119 (447)
..+...+..+|+.+....+..+.+.+.. .+...+..+... ++...-...+.++.+.+........+..+++. +
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---P 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---C
Confidence 3455556688888888888888887764 455666666643 23333334444444433221222334344432 5
Q ss_pred chhhHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhc
Q 048090 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199 (447)
Q Consensus 120 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 199 (447)
|..+-...+..+...+.. ....+...+..+|...-...+.++.+.+..+. +..... .++...-.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHH
Confidence 666666666766654422 23345566667787777777777777665432 222222 4566666667777776
Q ss_pred CCcHHH-HHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCH
Q 048090 200 LSAAEF-GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278 (447)
Q Consensus 200 ~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 278 (447)
.+..+. +...+..+.+. ++..+-...+.++...|..+.+...+..+ . ..++...-...+.++.+.+.
T Consensus 769 ~~~~~~~~~~~L~~ll~D-----~d~~VR~aA~~aLg~~g~~~~~~~~l~~a--L----~d~d~~VR~~Aa~aL~~l~~- 836 (897)
T PRK13800 769 LGAGGAPAGDAVRALTGD-----PDPLVRAAALAALAELGCPPDDVAAATAA--L----RASAWQVRQGAARALAGAAA- 836 (897)
T ss_pred hccccchhHHHHHHHhcC-----CCHHHHHHHHHHHHhcCCcchhHHHHHHH--h----cCCChHHHHHHHHHHHhccc-
Confidence 665432 33444455443 46778888889999888766553333321 1 23455566667777777776
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 048090 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326 (447)
Q Consensus 279 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 326 (447)
+++...+..+.+ .|+...-...+.++.+......+...+..+.++
T Consensus 837 ~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D 881 (897)
T PRK13800 837 DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALTD 881 (897)
T ss_pred cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhC
Confidence 456666666654 567777777777887764445677777777653
No 377
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.66 E-value=3.9 Score=24.83 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048090 405 IYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437 (447)
Q Consensus 405 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 437 (447)
....++.++.+.|++++|.+..+.+.+ ++|+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--~eP~ 33 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--IEPD 33 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HTTS
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 456677789999999999999999987 5665
No 378
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.55 E-value=23 Score=29.61 Aligned_cols=60 Identities=13% Similarity=-0.056 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 372 WGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 372 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
+..+-+++...|++-++.+-..+++...|.|..+|..-+.+....=+.++|..-|.....
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 566778888999999999999999999999999999999998888888888887777765
No 379
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.35 E-value=5.7 Score=26.36 Aligned_cols=47 Identities=6% Similarity=0.094 Sum_probs=19.8
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHH
Q 048090 309 HTGQVKLGIEYFEWMVHDYKLEPG-PEHYSCLVDLLCRAGELDKAWKL 355 (447)
Q Consensus 309 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 355 (447)
..+..++|+..|....++..-.|+ -.++..|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555544443111111 22334444455555555444443
No 380
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=81.24 E-value=11 Score=35.59 Aligned_cols=136 Identities=13% Similarity=-0.006 Sum_probs=92.2
Q ss_pred CCCHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHh
Q 048090 294 KPDEVAFVTVISACSHT--GQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371 (447)
Q Consensus 294 ~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 371 (447)
.|+..+...++.-.... ...+-+..++..|.+ .+.|--...|.-.-.+...|+...|...+..+....-...++ .
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v-~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDV-P 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcc-c
Confidence 45555555554433322 223334445554432 233332222322222345799999999998887654222233 3
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 372 WGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 372 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
...|.+...+.|.+..|..++.+.+.+....+-++..++++|.-..+.+.|++.|++..+.
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 6778888999999999999999999998888899999999999999999999999988763
No 381
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=80.81 E-value=77 Score=33.15 Aligned_cols=258 Identities=8% Similarity=-0.076 Sum_probs=141.7
Q ss_pred hHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Q 048090 139 DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218 (447)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 218 (447)
....+...+..+|+..-...+..+.+.+..+ +...+....+ .++...-...+.++.+.+........+..++..
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~-- 695 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS-- 695 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC--
Confidence 3345566666788888888888887777644 5455555553 345444445555554433221222333333332
Q ss_pred cCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 048090 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298 (447)
Q Consensus 219 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 298 (447)
++..+-...+.++...+..+ ...+...+ ..+|...-...+.++.+.+..+. +..+. -.++..
T Consensus 696 ---~d~~VR~~A~~aL~~~~~~~-~~~l~~~L-------~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~ 757 (897)
T PRK13800 696 ---PDPVVRAAALDVLRALRAGD-AALFAAAL-------GDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENRE 757 (897)
T ss_pred ---CCHHHHHHHHHHHHhhccCC-HHHHHHHh-------cCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHH
Confidence 45566666666665443211 12222211 24455555666667666654432 22222 245566
Q ss_pred HHHHHHHHHhccCcHHH-HHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHH
Q 048090 299 AFVTVISACSHTGQVKL-GIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377 (447)
Q Consensus 299 ~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~ 377 (447)
.-...+.++...+..+. +...+..+.+ .++...-...+.++.+.|..+.+...+..+++. + +..+-...+.
T Consensus 758 VR~~aa~aL~~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~-d~~VR~~Aa~ 829 (897)
T PRK13800 758 VRIAVAKGLATLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRA---S-AWQVRQGAAR 829 (897)
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---C-ChHHHHHHHH
Confidence 66666677776665433 3444555543 456777778888888888766655555556554 2 3444566677
Q ss_pred HHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 378 ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 378 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
++...+.. ++...+..+++ -++..+-...+.++.+.+....+...+....+
T Consensus 830 aL~~l~~~-~a~~~L~~~L~--D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 830 ALAGAAAD-VAVPALVEALT--DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHhcccc-chHHHHHHHhc--CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 77777653 45555555553 22455666666666665334456666665554
No 382
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.19 E-value=4.8 Score=23.30 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=15.6
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhcC
Q 048090 57 VISDFCRNGSPLYALKTFSFMHVHG 81 (447)
Q Consensus 57 l~~~~~~~~~~~~a~~~~~~m~~~~ 81 (447)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556666666666666666666543
No 383
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=80.09 E-value=54 Score=30.89 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=30.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 048090 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216 (447)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 216 (447)
|....-+++..+..+..+.-...+..+|...| .+...|..++.+|... .-++-..+++++++.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~ 127 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY 127 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence 33344445555555555555555555555432 3444455555555444 334444555555444
No 384
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=80.05 E-value=19 Score=27.42 Aligned_cols=81 Identities=10% Similarity=0.049 Sum_probs=47.1
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhcCC-----CCchhhHHHHHHHhccCCc-hhHHHHHHHHHHHcCCCCchhhHHHH
Q 048090 54 FNVVISDFCRNGSPLYALKTFSFMHVHGI-----FLDTYALCSSLTASTSVKD-ARFGKQVQAHVTKSGWLSSVFVGSAL 127 (447)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 127 (447)
.|+++.-.+..+++...+.+++.+..-.. ..+..+|..++++.+...- --.+..+|..+.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45666666666666666666666632110 2244556777776655544 33455566666666666666667666
Q ss_pred HHHHHcc
Q 048090 128 IDLYAKL 134 (447)
Q Consensus 128 ~~~~~~~ 134 (447)
+.++.+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6665544
No 385
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.02 E-value=3.1 Score=27.57 Aligned_cols=45 Identities=13% Similarity=0.048 Sum_probs=29.7
Q ss_pred hcCCccHHHHHHHHHhhhCCCc---hhHHHHHHHHHHhcCChHHHHHH
Q 048090 381 DCGKFELGKLAAQKALELDPHN---VGIYVMLSNLYAKFCMWDEIGQL 425 (447)
Q Consensus 381 ~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~ 425 (447)
...+.+.|...|+++++..++. ..++-.|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677777777777765443 33555666777777887777654
No 386
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=79.71 E-value=11 Score=27.58 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=29.5
Q ss_pred hHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHH
Q 048090 69 YALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114 (447)
Q Consensus 69 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 114 (447)
+..+.++.+...++.|++......+++|.+.+|+..|.++++-+..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444455555566667777777777777777777777777765554
No 387
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=79.45 E-value=16 Score=25.41 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=17.4
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHhhhC
Q 048090 373 GALLSACHDCGKFELGKLAAQKALELD 399 (447)
Q Consensus 373 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 399 (447)
..+.......|++++|...++++++.-
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 345555666777777777777776643
No 388
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=79.15 E-value=26 Score=26.74 Aligned_cols=76 Identities=8% Similarity=0.140 Sum_probs=47.5
Q ss_pred HHHHHHHHccCChhhHHHHhccCC---------CCchhhHHHHHHHHHhcCC-HHHHHHHHHhhhhcCCCCcHhhHHHHH
Q 048090 125 SALIDLYAKLLLIHDAELMFDEIP---------VKNSVCANALLSGYCEAKL-WAGGLELVRLMPALGLDYDHFTLSALL 194 (447)
Q Consensus 125 ~~l~~~~~~~g~~~~a~~~~~~~~---------~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 194 (447)
|.++.-.+..+++.....+++.+. ..+...|+.++.+..+... --.+..+|.-|++.+.++++.-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444554455555555555554443 1245567777777765555 344566777777777778888888888
Q ss_pred HHHhcC
Q 048090 195 RACAGL 200 (447)
Q Consensus 195 ~~~~~~ 200 (447)
.++.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 877654
No 389
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.64 E-value=58 Score=30.47 Aligned_cols=111 Identities=17% Similarity=0.226 Sum_probs=75.7
Q ss_pred HHHHhcCChHHHHHHHHhhhhhcccCCCcc-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCCH--
Q 048090 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKD-----VVLWTSMLGVYGRNGYFKEVIKLYEAMLM-------NGTKPDE-- 297 (447)
Q Consensus 232 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-------~~~~p~~-- 297 (447)
+.+.-.|++.+|.+++.........|...+ -..||.|...+.+.|.+..+..+|.+..+ .|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 456678999999999876544433332222 22356777777777887777777766653 3555422
Q ss_pred ---------HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH
Q 048090 298 ---------VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345 (447)
Q Consensus 298 ---------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 345 (447)
.+|+.=+ .+...|++-.|.+-|.+..+. +..++..|..|..+|..
T Consensus 328 tls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~v--fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHV--FHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHH
Confidence 3444433 467889999999999999875 46778889999988863
No 390
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.19 E-value=16 Score=35.05 Aligned_cols=87 Identities=13% Similarity=0.001 Sum_probs=68.3
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCch------HhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhc
Q 048090 343 LCRAGELDKAWKLINEMLDRGHGSSSV------SMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKF 416 (447)
Q Consensus 343 ~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 416 (447)
..+..++..+.+.|..-...- |.|. ..+..|.-+|....+.|.|.++++++.+.+|.++-.-..+..+....
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i--~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E 441 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDI--ISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAE 441 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--cchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence 456778888888887655432 3222 24667777888899999999999999999999998888888888999
Q ss_pred CChHHHHHHHHHHHH
Q 048090 417 CMWDEIGQLRELMKE 431 (447)
Q Consensus 417 g~~~~A~~~~~~m~~ 431 (447)
|.-++|+........
T Consensus 442 ~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 442 DKSEEALTCLQKIKS 456 (872)
T ss_pred cchHHHHHHHHHHHh
Confidence 999999888777654
No 391
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=78.09 E-value=75 Score=31.45 Aligned_cols=44 Identities=18% Similarity=-0.043 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHccCChhhHHHHhccCC---CCchhhHHHHHHHHHhc
Q 048090 122 FVGSALIDLYAKLLLIHDAELMFDEIP---VKNSVCANALLSGYCEA 165 (447)
Q Consensus 122 ~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~ 165 (447)
...-.+|-.|.|+|++++|.++..+.. ......+-..+..|...
T Consensus 112 ~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred CccHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 334557788889999999999983322 23334455566666554
No 392
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.74 E-value=16 Score=29.70 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=23.5
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048090 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRG 363 (447)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 363 (447)
...|+..+|..++.++...|+.++|.++.+++...-
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 345666666666666667777777766666666553
No 393
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.67 E-value=43 Score=28.49 Aligned_cols=168 Identities=13% Similarity=0.137 Sum_probs=85.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhhc---CC--CCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhh---cCCCChhHHH
Q 048090 157 ALLSGYCEAKLWAGGLELVRLMPAL---GL--DYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC---NLGNDVFMQS 228 (447)
Q Consensus 157 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~ 228 (447)
.++..+.+.+++++.+..|.++..- .+ .-+....+++++..+...+.+.-..+++.-+..-. +-..--.+-+
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 3455555556666555555555321 11 11233445555544444444444444444333210 1011112335
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhhhcccCC--------CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHH
Q 048090 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEI--------NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG-TKPDEVA 299 (447)
Q Consensus 229 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~ 299 (447)
.|...|...|.+.+..++++++...-+... ..-...|..-|..|...++-.+...++++...-. .-|.+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 566777777777777777765544321111 1123456677777877777777777777765432 2344333
Q ss_pred HHHHHHHHh-----ccCcHHHHHHHHHHHHH
Q 048090 300 FVTVISACS-----HTGQVKLGIEYFEWMVH 325 (447)
Q Consensus 300 ~~~ll~~~~-----~~~~~~~a~~~~~~~~~ 325 (447)
..+|+-|. +.|++++|..-|-++.+
T Consensus 230 -mGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 230 -MGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred -HhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 34444443 56778777655444433
No 394
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=76.73 E-value=39 Score=29.37 Aligned_cols=71 Identities=11% Similarity=0.124 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHH----------hcCCHHHHHHHH
Q 048090 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC----------EAKLWAGGLELV 175 (447)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a~~~~ 175 (447)
.++|+.+.+.++.|.-..+.-+.-.+.+.=.+.+.+.+++.+... ..-|..|+..|+ -.|++.-.++++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-PQRFDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-hhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 355666666666666666655555566666666666666665532 111444444433 246666666665
Q ss_pred Hh
Q 048090 176 RL 177 (447)
Q Consensus 176 ~~ 177 (447)
+.
T Consensus 342 Q~ 343 (370)
T KOG4567|consen 342 QN 343 (370)
T ss_pred hc
Confidence 44
No 395
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=76.62 E-value=6.2 Score=33.95 Aligned_cols=58 Identities=19% Similarity=0.192 Sum_probs=33.3
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchh
Q 048090 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404 (447)
Q Consensus 345 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 404 (447)
+.|+.++|..+|+.++... |.++.+..-++......+++-+|-++|-+++...|.+..
T Consensus 128 ~~Gk~ekA~~lfeHAlala--P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALA--PTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred hccchHHHHHHHHHHHhcC--CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 4556666666666655554 555555555555555555555666666666655555443
No 396
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.93 E-value=82 Score=32.30 Aligned_cols=119 Identities=17% Similarity=0.162 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCCHHHHHH-
Q 048090 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF--KEVIKLYEAMLMNGTKPDEVAFVT- 302 (447)
Q Consensus 226 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~m~~~~~~p~~~~~~~- 302 (447)
.|..|+..|...|+.++|++++.+...........-...+..++..+.+.+.. +-+++.-+...+.........+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 46677777777777777777777554321000000111122233333333333 333333333322211100011111
Q ss_pred -----------HHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH
Q 048090 303 -----------VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345 (447)
Q Consensus 303 -----------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 345 (447)
.+-.+......+.+..+++.+... .-.++....+.++..|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~-~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISD-NRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHh-ccccchHHHHHHHHHHHH
Confidence 112344556677777888888765 334456666666666653
No 397
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=75.82 E-value=64 Score=29.44 Aligned_cols=212 Identities=17% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhhhhccc----CCCcchhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCC
Q 048090 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEG----EINKDVVLWTSMLGVYGRN-------GYFKEVIKLYEAMLMNGTK 294 (447)
Q Consensus 226 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~-------g~~~~a~~~~~~m~~~~~~ 294 (447)
+|..++.+..+.+......+-...+...... ..++.-..+-+.+....+. ...+-...+..=..+.|-+
T Consensus 3 ~w~~~i~s~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~R~p~LA~lel~~~~~~~~~~~~~~~~~~~l~~Y~~~f~~K 82 (365)
T PF09797_consen 3 VWKLLIDSAFELGKSEEELEDVQEFLESLQAESSQSNPKSRGPYLARLELAKRLRERGDAPDEEDLLELLEEYFDKFGSK 82 (365)
T ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHhCCC
Q ss_pred C----CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHH--------cCCHHHHHHHHHHHH
Q 048090 295 P----DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK--LEPGPEHYSCLVDLLCR--------AGELDKAWKLINEML 360 (447)
Q Consensus 295 p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~ 360 (447)
| |...|...+ +.++..++++.+..... .+.+.......+.++-- .-..+....+..++.
T Consensus 83 ~cCf~DL~~Y~~~L-------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~in~~kl~r~~~~~~~~~~~~~~~~~~~~~ 155 (365)
T PF09797_consen 83 PCCFDDLKPYLESL-------DPEERKELLEKLLEKIEADSKEDIKQLIRHINALKLSRFLGLHFSLSSESLLDLAQELL 155 (365)
T ss_pred CEeHHHHHHHHHhC-------CHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhcccccCChhhHHHHHHHHH
Q ss_pred h-------------CCCCCCchHhHHHHHHHHH------hcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHH
Q 048090 361 D-------------RGHGSSSVSMWGALLSACH------DCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421 (447)
Q Consensus 361 ~-------------~~~~p~~~~~~~~l~~~~~------~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 421 (447)
. ....|.+..+..+....+. ....+-+|..+++.++...|.|..+-..+++.|...|-.+.
T Consensus 156 ~~y~~~l~~~~~l~te~~~~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~ 235 (365)
T PF09797_consen 156 KLYQESLSLGKDLKTESQPADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSL 235 (365)
T ss_pred HHHHhhCccccccccccCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHH
Q ss_pred HHHHHHHHHHcCCCCCCcccccc
Q 048090 422 IGQLRELMKEKGLKKDVGCSWIE 444 (447)
Q Consensus 422 A~~~~~~m~~~~~~p~~~~~~~~ 444 (447)
|.+.|+.+.-+.+.-|.-.+.++
T Consensus 236 A~~~~~~L~iK~IQ~DTL~h~~~ 258 (365)
T PF09797_consen 236 ALEHYESLDIKNIQLDTLGHLIL 258 (365)
T ss_pred HHHHHHhcChHHHHHHHhHHHHH
No 398
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=75.81 E-value=21 Score=26.28 Aligned_cols=59 Identities=15% Similarity=0.217 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 048090 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340 (447)
Q Consensus 280 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 340 (447)
+..+-++.+....+.|++......+++|.+.+++..|..+|+-+..+ +.+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 34455566666678888888888888888888888888888877654 333333455544
No 399
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=75.70 E-value=89 Score=31.08 Aligned_cols=50 Identities=22% Similarity=0.234 Sum_probs=29.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhH
Q 048090 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405 (447)
Q Consensus 342 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 405 (447)
.+.+.|.++...++|+-.. .+.+-.-.+++.+|.+.-+.+.++.||.-..
T Consensus 353 LlgrKG~leklq~YWdV~~--------------y~~asVLAnd~~kaiqAae~mfKLk~P~WYL 402 (1226)
T KOG4279|consen 353 LLGRKGALEKLQEYWDVAT--------------YFEASVLANDYQKAIQAAEMMFKLKPPVWYL 402 (1226)
T ss_pred HhhccchHHHHHHHHhHHH--------------hhhhhhhccCHHHHHHHHHHHhccCCceehH
Confidence 3456666666666554322 1223334567777888888888888775443
No 400
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.91 E-value=67 Score=29.27 Aligned_cols=58 Identities=12% Similarity=-0.013 Sum_probs=38.4
Q ss_pred hHHHHHHHHHccCChhhHHHHhccCCC------CchhhHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 048090 123 VGSALIDLYAKLLLIHDAELMFDEIPV------KNSVCANALLSGYCEAKLWAGGLELVRLMPA 180 (447)
Q Consensus 123 ~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (447)
.+.-+.+.|..+|+++.|++.|.+... .....|-.+|..-.-.|+|.....+..+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 456677778888888888888877542 1233455666666667777777666666554
No 401
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.63 E-value=1.1e+02 Score=31.52 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=21.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 048090 154 CANALLSGYCEAKLWAGGLELVRLMPA 180 (447)
Q Consensus 154 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (447)
-|..|+..|...|+.++|+++|.+..+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 377788888888888888888888765
No 402
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=73.68 E-value=24 Score=29.21 Aligned_cols=31 Identities=10% Similarity=0.152 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 048090 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433 (447)
Q Consensus 403 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 433 (447)
..+...++....+.|++++|.+.|.++...+
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3455566666777777777777777776543
No 403
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.30 E-value=60 Score=27.96 Aligned_cols=87 Identities=14% Similarity=0.119 Sum_probs=44.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH----
Q 048090 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC---- 344 (447)
Q Consensus 269 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 344 (447)
|++++..+++.++....-+--+.--+........-|-.|.+.+.+..+.++-..-.+. .-.-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHHHH
Confidence 5666667777766655444333211122233333444566667766666666555543 11222333555555543
Q ss_pred -HcCCHHHHHHHH
Q 048090 345 -RAGELDKAWKLI 356 (447)
Q Consensus 345 -~~g~~~~A~~~~ 356 (447)
-.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 346666666655
No 404
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=72.50 E-value=8.2 Score=31.79 Aligned_cols=55 Identities=22% Similarity=0.164 Sum_probs=50.1
Q ss_pred HHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 378 ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 378 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
...+.++.+.+.+++.+++++-|.....|..+...-.++|+.+.|.+.|++..+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 3456789999999999999999999999999999999999999999999998763
No 405
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.06 E-value=1.4e+02 Score=31.59 Aligned_cols=164 Identities=17% Similarity=0.103 Sum_probs=94.8
Q ss_pred HHHHHhcCChHHHHHHHHhhhhhc--------------------ccCCCcc-----hhhHHHHHHHHHhcCCHHHHHHHH
Q 048090 231 IEMYGKCGLVTKALQVFNLAGHRL--------------------EGEINKD-----VVLWTSMLGVYGRNGYFKEVIKLY 285 (447)
Q Consensus 231 ~~~~~~~g~~~~A~~~~~~~~~~~--------------------~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~ 285 (447)
..+|...|..-+|++.|.++..-. ..|..|. ..-|...++.+-+.+..+.+.++-
T Consensus 927 g~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA 1006 (1480)
T KOG4521|consen 927 GIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLA 1006 (1480)
T ss_pred heeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 344777888888888887553220 1222221 234677788888889999998888
Q ss_pred HHHHhCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHH----------
Q 048090 286 EAMLMNGTKPD----EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK---------- 351 (447)
Q Consensus 286 ~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---------- 351 (447)
...++. +.++ ..+++.+..-....|.+-+|...+-.-. .......+...|+..++.+|.++.
T Consensus 1007 ~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~np---dserrrdcLRqlvivLfecg~l~~L~~fpfigl~ 1082 (1480)
T KOG4521|consen 1007 VKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNP---DSERRRDCLRQLVIVLFECGELEALATFPFIGLE 1082 (1480)
T ss_pred HHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHhccchHHHhhCCccchH
Confidence 777764 2322 3456667777777777776665432221 111123456667777778777643
Q ss_pred --HHH-HHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHH-HHHHHhhhC
Q 048090 352 --AWK-LINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKL-AAQKALELD 399 (447)
Q Consensus 352 --A~~-~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~ 399 (447)
... +++..-+.. .......|..|-..+...+++.+|-. .|+.+...+
T Consensus 1083 ~eve~~l~esaaRs~-~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~ 1133 (1480)
T KOG4521|consen 1083 QEVEDFLRESAARSS-PSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLE 1133 (1480)
T ss_pred HHHHHHHHHHHhhcC-ccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhc
Confidence 333 222222222 11222336666666677888887665 455555544
No 406
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=71.53 E-value=69 Score=27.95 Aligned_cols=149 Identities=12% Similarity=-0.054 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcC----
Q 048090 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH----TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG---- 347 (447)
Q Consensus 276 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 347 (447)
.+..+|.++|+.+.+.|..+ ....|...+.. ..+..+|..+|+++.+. |..+.......+...|....
T Consensus 91 ~~~~~A~~~~~~~a~~g~~~---a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~ 166 (292)
T COG0790 91 RDKTKAADWYRCAAADGLAE---ALFNLGLMYANGRGVPLDLVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALA 166 (292)
T ss_pred ccHHHHHHHHHHHhhcccHH---HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhc
Confidence 34566777777666554322 22223333332 33677777777777654 44332222333333333321
Q ss_pred ---CHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHh----cCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcC---
Q 048090 348 ---ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD----CGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFC--- 417 (447)
Q Consensus 348 ---~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 417 (447)
+...|...+.++...+ +......+...|.. ..+.++|...|+++.+.+. ......+. .+...|
T Consensus 167 ~~~~~~~A~~~~~~aa~~~----~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~ 239 (292)
T COG0790 167 VAYDDKKALYLYRKAAELG----NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGV 239 (292)
T ss_pred ccHHHHhHHHHHHHHHHhc----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCc
Confidence 2336777777777766 34445555554433 3366778888887777665 44444444 444444
Q ss_pred ------------ChHHHHHHHHHHHHcCCC
Q 048090 418 ------------MWDEIGQLRELMKEKGLK 435 (447)
Q Consensus 418 ------------~~~~A~~~~~~m~~~~~~ 435 (447)
+...|...+......|..
T Consensus 240 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 240 KKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred hhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 666677777766665544
No 407
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=71.49 E-value=29 Score=23.70 Aligned_cols=35 Identities=11% Similarity=-0.003 Sum_probs=18.4
Q ss_pred cCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHH
Q 048090 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169 (447)
Q Consensus 134 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 169 (447)
.|+.+.|.+++..++ ..+..|..++.++...|.-+
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 49 HGNESGARELLKRIV-QKEGWFSKFLQALRETEHHE 83 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchh
Confidence 355555555555555 44555555555555554433
No 408
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.43 E-value=60 Score=27.17 Aligned_cols=90 Identities=14% Similarity=0.063 Sum_probs=46.8
Q ss_pred CcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhH------HHHHHHHH
Q 048090 311 GQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW------GALLSACH 380 (447)
Q Consensus 311 ~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~------~~l~~~~~ 380 (447)
.+++.|+..|+..-+-+...-. -..+......-...+++.+|+.+|++.......- +..-| ..-+.++.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n-~LLKys~KdyflkAgLChl 206 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN-NLLKYSAKDYFLKAGLCHL 206 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hHHHhHHHHHHHHHHHHhH
Confidence 4556666666655432211111 1222333333456778888888888876554321 11112 22222333
Q ss_pred hcCCccHHHHHHHHHhhhCCC
Q 048090 381 DCGKFELGKLAAQKALELDPH 401 (447)
Q Consensus 381 ~~g~~~~a~~~~~~~~~~~~~ 401 (447)
-..|.-.+...+++..+.+|.
T Consensus 207 ~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 207 CKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred hcccHHHHHHHHHHHHhcCCc
Confidence 345666677778887777776
No 409
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=71.16 E-value=35 Score=24.37 Aligned_cols=39 Identities=10% Similarity=0.073 Sum_probs=16.0
Q ss_pred cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHH
Q 048090 312 QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352 (447)
Q Consensus 312 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 352 (447)
..++|..+.+.+... +- -....-.+-+..+.+.|++++|
T Consensus 21 cH~EA~tIa~wL~~~-~~-~~E~v~lIr~~sLmNrG~Yq~A 59 (116)
T PF09477_consen 21 CHQEANTIADWLEQE-GE-MEEVVALIRLSSLMNRGDYQEA 59 (116)
T ss_dssp -HHHHHHHHHHHHHT-TT-THHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHhC-Cc-HHHHHHHHHHHHHHhhHHHHHH
Confidence 455666666555432 11 1111112222334556666666
No 410
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.68 E-value=51 Score=28.36 Aligned_cols=87 Identities=16% Similarity=0.039 Sum_probs=47.0
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHH
Q 048090 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273 (447)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 273 (447)
|.+++..++|.++....-+--+...++ .+.+...-|-.|.+.+.+..+.++-.....-.. .-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEkl--PpkIleLCILLysKv~Ep~amlev~~~WL~~p~---Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKL--PPKILELCILLYSKVQEPAAMLEVASAWLQDPS---NQSLPEYGTVAELYL 164 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc---cCCchhhHHHHHHHH
Confidence 556667777777666554443331122 233444455567777777777666653333211 122233555555444
Q ss_pred h-----cCCHHHHHHHH
Q 048090 274 R-----NGYFKEVIKLY 285 (447)
Q Consensus 274 ~-----~g~~~~a~~~~ 285 (447)
. .|.+++|+++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 3 57777777766
No 411
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=70.27 E-value=37 Score=24.27 Aligned_cols=88 Identities=9% Similarity=-0.079 Sum_probs=50.7
Q ss_pred CCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhh
Q 048090 99 VKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178 (447)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (447)
....++|..+.+.+...+- ....+--+-+..+.+.|++++|...=.....||...|-+|.. .+.|-.+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 3456777777777777652 222233334455677788888855555555677777766654 3677777777777777
Q ss_pred hhcCCCCcHhhH
Q 048090 179 PALGLDYDHFTL 190 (447)
Q Consensus 179 ~~~~~~~~~~~~ 190 (447)
...| .|....|
T Consensus 96 a~~g-~~~~q~F 106 (116)
T PF09477_consen 96 ASSG-SPELQAF 106 (116)
T ss_dssp CT-S-SHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 6655 4444444
No 412
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=70.01 E-value=20 Score=21.17 Aligned_cols=33 Identities=12% Similarity=0.032 Sum_probs=18.7
Q ss_pred HhCCChhhHHHHHHHHHhcCCCCchhhHHHHHH
Q 048090 62 CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94 (447)
Q Consensus 62 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 94 (447)
.+.|-..++..++++|.+.|+..+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 445555566666666666665555555555443
No 413
>PRK13342 recombination factor protein RarA; Reviewed
Probab=69.50 E-value=98 Score=28.85 Aligned_cols=43 Identities=16% Similarity=0.036 Sum_probs=27.9
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHH
Q 048090 155 ANALLSGYCE---AKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197 (447)
Q Consensus 155 ~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 197 (447)
+..+++++.+ .++.+.|+..+..|.+.|..|....-..++.++
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4444555444 478888888888888888777655444444443
No 414
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=69.44 E-value=29 Score=24.09 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=13.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 048090 268 MLGVYGRNGYFKEVIKLYEAMLM 290 (447)
Q Consensus 268 l~~~~~~~g~~~~a~~~~~~m~~ 290 (447)
+.......|++++|...+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33445556777777766666544
No 415
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=69.11 E-value=37 Score=23.91 Aligned_cols=87 Identities=17% Similarity=0.154 Sum_probs=54.5
Q ss_pred cHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHH
Q 048090 202 AAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281 (447)
Q Consensus 202 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 281 (447)
..++|..+-+.+... + .....+-..-+..+...|++++|..+.+. . ..||...|.++.. .+.|..+++
T Consensus 20 cHqEA~tIAdwL~~~--~-~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~---~----~~pdlepw~ALce--~rlGl~s~l 87 (115)
T TIGR02508 20 CHQEANTIADWLHLK--G-ESEEAVQLIRLSSLMNRGDYQSALQLGNK---L----CYPDLEPWLALCE--WRLGLGSAL 87 (115)
T ss_pred HHHHHHHHHHHHhcC--C-chHHHHHHHHHHHHHccchHHHHHHhcCC---C----CCchHHHHHHHHH--HhhccHHHH
Confidence 346666666666554 1 11222233334567788889988887762 2 5788888876654 467777777
Q ss_pred HHHHHHHHhCCCCCCHHHHH
Q 048090 282 IKLYEAMLMNGTKPDEVAFV 301 (447)
Q Consensus 282 ~~~~~~m~~~~~~p~~~~~~ 301 (447)
..-+.+|..+| .|....|.
T Consensus 88 ~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 88 ESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHHHhCC-CHHHHHHH
Confidence 77777777776 55555553
No 416
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=69.07 E-value=19 Score=22.73 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=13.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 048090 337 SCLVDLLCRAGELDKAWKLINEMLD 361 (447)
Q Consensus 337 ~~l~~~~~~~g~~~~A~~~~~~~~~ 361 (447)
..+|.+|...|++++|.++++++..
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445566666666666666655543
No 417
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=68.79 E-value=85 Score=27.87 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=35.9
Q ss_pred HHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhH--HHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCH
Q 048090 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW--TSMLGVYGRNGYFKEVIKLYEAMLM-----NGTKPDE 297 (447)
Q Consensus 231 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~ 297 (447)
+...-+.++.++|+++++++.........|+...| ..+..++...|+..++.+++.+..+ .++.|+.
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Confidence 33344445666666666655554444444454443 2344455566666666666666555 3555543
No 418
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=68.61 E-value=46 Score=24.72 Aligned_cols=43 Identities=12% Similarity=0.241 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHH
Q 048090 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393 (447)
Q Consensus 351 ~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 393 (447)
+..++|..|...++.......|......+...|++.+|.++++
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566677777777666666666666666667777777776665
No 419
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=68.45 E-value=28 Score=29.61 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=26.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhcC----CCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 048090 302 TVISACSHTGQVKLGIEYFEWMVHDYK----LEPGPEHYSCLVDLLCRAGELDKAWKLINE 358 (447)
Q Consensus 302 ~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 358 (447)
.+..-|...|+++.|.++|+.+...+. ..+...+...+..++.+.|+.+....+.-+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344445555555555555555532211 112233334444455555555555544433
No 420
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=67.94 E-value=97 Score=28.21 Aligned_cols=142 Identities=13% Similarity=0.098 Sum_probs=72.7
Q ss_pred HhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH
Q 048090 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314 (447)
Q Consensus 235 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 314 (447)
...++++.-..+++ . .|-.+.+...+-..+...|+.+.|.+++++..-.--..-...|..+.. -...|..
T Consensus 21 v~~~Dp~~l~~ll~---~-----~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~-~~~~g~~- 90 (360)
T PF04910_consen 21 VQSHDPNALINLLQ---K-----NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRS-NLTSGNC- 90 (360)
T ss_pred HHccCHHHHHHHHH---H-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhc-ccccCcc-
Confidence 34456665555554 2 556677777777788888888888777777642100000000100000 0000000
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHH---HHHHHHcCCHHHHHHHHHHHHhCCCCCC-chHhHHHHHHHHH-hcCCccHHH
Q 048090 315 LGIEYFEWMVHDYKLEPGPEHYSCL---VDLLCRAGELDKAWKLINEMLDRGHGSS-SVSMWGALLSACH-DCGKFELGK 389 (447)
Q Consensus 315 ~a~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~ 389 (447)
+-.+...-|...|.++ |..+.+.|.+..|+++.+-+...+ |. |+......+..|+ +.++++--.
T Consensus 91 ---------rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLd--p~~DP~g~ll~ID~~ALrs~~y~~Li 159 (360)
T PF04910_consen 91 ---------RLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLD--PDEDPLGVLLFIDYYALRSRQYQWLI 159 (360)
T ss_pred ---------ccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CCCCcchhHHHHHHHHHhcCCHHHHH
Confidence 0000112233344333 445667777888888777777776 55 5554555555554 455666566
Q ss_pred HHHHHHhh
Q 048090 390 LAAQKALE 397 (447)
Q Consensus 390 ~~~~~~~~ 397 (447)
++.+....
T Consensus 160 ~~~~~~~~ 167 (360)
T PF04910_consen 160 DFSESPLA 167 (360)
T ss_pred HHHHhHhh
Confidence 66655443
No 421
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=67.42 E-value=66 Score=28.48 Aligned_cols=93 Identities=10% Similarity=0.013 Sum_probs=43.4
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHH
Q 048090 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPG--PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380 (447)
Q Consensus 303 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 380 (447)
=.+-|.+..++..|...|.+-++...-.|+ ...|+.-..+-.-.|++..|+.=....+..+ |.....|..=..++.
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~--P~h~Ka~~R~Akc~~ 164 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK--PTHLKAYIRGAKCLL 164 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC--cchhhhhhhhhHHHH
Confidence 333444455555555555554443222222 3334443333444455555555554444443 555554444455555
Q ss_pred hcCCccHHHHHHHHHhh
Q 048090 381 DCGKFELGKLAAQKALE 397 (447)
Q Consensus 381 ~~g~~~~a~~~~~~~~~ 397 (447)
...++++|..+.++.+.
T Consensus 165 eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 165 ELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 55555555555554443
No 422
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=67.32 E-value=32 Score=29.39 Aligned_cols=64 Identities=14% Similarity=0.043 Sum_probs=52.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchh
Q 048090 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404 (447)
Q Consensus 339 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 404 (447)
+=..+.++++++.|....++.+..+ |.++.-+.--+.+|.+.|...-|..-++..++..|+++.
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~--P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLN--PEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhC--CCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 3456778889999999999988877 888877777888889999999899999888888887664
No 423
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.07 E-value=8.2 Score=33.87 Aligned_cols=91 Identities=12% Similarity=0.135 Sum_probs=56.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHH
Q 048090 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG-PEHYSCLVDLLCRAGELD 350 (447)
Q Consensus 272 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 350 (447)
....|.++.|++.|...+..+ .|....|..-.+++.+.+++..|++=++... .+.|| ..-|-.--.+....|+++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~---ein~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAI---EINPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhh---ccCcccccccchhhHHHHHhhchH
Confidence 344566777777777776653 3445556666666777777777777766665 34554 333333334445567777
Q ss_pred HHHHHHHHHHhCCCCC
Q 048090 351 KAWKLINEMLDRGHGS 366 (447)
Q Consensus 351 ~A~~~~~~~~~~~~~p 366 (447)
+|...+....+.++.+
T Consensus 200 ~aa~dl~~a~kld~dE 215 (377)
T KOG1308|consen 200 EAAHDLALACKLDYDE 215 (377)
T ss_pred HHHHHHHHHHhccccH
Confidence 7777777777776544
No 424
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=66.89 E-value=9 Score=28.50 Aligned_cols=29 Identities=28% Similarity=0.127 Sum_probs=14.8
Q ss_pred CCChhhHHHHHHHHHhcCCCCchhhHHHHHH
Q 048090 64 NGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94 (447)
Q Consensus 64 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 94 (447)
.|.-..|-.+|++|+..|-+||. |+.|+.
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 34445555555566555555543 444443
No 425
>PHA02875 ankyrin repeat protein; Provisional
Probab=66.75 E-value=1.1e+02 Score=28.40 Aligned_cols=206 Identities=13% Similarity=-0.037 Sum_probs=105.7
Q ss_pred HHhCCChhhHHHHHHHHHhcCCCCchhh--HHHHHHHhccCCchhHHHHHHHHHHHcCCCCchh--hHHHHHHHHHccCC
Q 048090 61 FCRNGSPLYALKTFSFMHVHGIFLDTYA--LCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVF--VGSALIDLYAKLLL 136 (447)
Q Consensus 61 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~ 136 (447)
.++.|+.+- ++.+.+.|..|+... ..+.+..++..|+.+ +.+.+.+.|..|+.. .....+...+..|+
T Consensus 9 A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 355666644 444555777776533 344555666777765 445555666555432 12234566677899
Q ss_pred hhhHHHHhccCCCC----chhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHh---hHHHHHHHHhcCCcHHHHHHH
Q 048090 137 IHDAELMFDEIPVK----NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF---TLSALLRACAGLSAAEFGRQV 209 (447)
Q Consensus 137 ~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~ 209 (447)
.+.+..+++.-... +....+ .+...+..|+.+-+ +.+.+.|..|+.. ..+. +...+..|+.+.+..+
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~~iv----~~Ll~~gad~~~~~~~g~tp-Lh~A~~~~~~~~v~~L 154 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKLDIM----KLLIARGADPDIPNTDKFSP-LHLAVMMGDIKGIELL 154 (413)
T ss_pred HHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCHHHH----HHHHhCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHH
Confidence 99888888764422 111222 33334456666543 4444455554332 2223 3344456766554444
Q ss_pred HHHHHHhhhcCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhh---HHHHHHHHHhcCCHHHHHH
Q 048090 210 HAYMIRKCCNLGND---VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL---WTSMLGVYGRNGYFKEVIK 283 (447)
Q Consensus 210 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~ 283 (447)
.+. +..++ ..-.+. +...+..|+.+-+.-+++. |..++... ..+.+...+..|+.+
T Consensus 155 ----l~~--g~~~~~~d~~g~Tp-L~~A~~~g~~eiv~~Ll~~-------ga~~n~~~~~~~~t~l~~A~~~~~~~---- 216 (413)
T PHA02875 155 ----IDH--KACLDIEDCCGCTP-LIIAMAKGDIAICKMLLDS-------GANIDYFGKNGCVAALCYAIENNKID---- 216 (413)
T ss_pred ----Hhc--CCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhC-------CCCCCcCCCCCCchHHHHHHHcCCHH----
Confidence 344 22222 222233 3344556777666555541 33333221 123444445566654
Q ss_pred HHHHHHhCCCCCCHH
Q 048090 284 LYEAMLMNGTKPDEV 298 (447)
Q Consensus 284 ~~~~m~~~~~~p~~~ 298 (447)
+.+.+.+.|..++..
T Consensus 217 iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 217 IVRLFIKRGADCNIM 231 (413)
T ss_pred HHHHHHHCCcCcchH
Confidence 555666778777753
No 426
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=66.21 E-value=9 Score=33.10 Aligned_cols=77 Identities=10% Similarity=0.069 Sum_probs=61.1
Q ss_pred CCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCCCccccc
Q 048090 365 GSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM-LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443 (447)
Q Consensus 365 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 443 (447)
.|.|+..|...+....+.|.+.+...++.++++..|.|...|.. -..-|...++++.+..+|.+-.. +.|+....|+
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR--~N~~~p~iw~ 180 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLR--MNSRSPRIWI 180 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhc--cCCCCchHHH
Confidence 37899989988888888999999999999999999999988866 33345678899999888877654 4555555554
No 427
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=66.08 E-value=11 Score=36.74 Aligned_cols=73 Identities=3% Similarity=-0.164 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhc
Q 048090 71 LKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD 145 (447)
Q Consensus 71 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 145 (447)
....+.+..+-.-.+......++..|.+.|-.+.|..+.+.+-..-+ ...-|...+..+.++|+......+-+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~ 462 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIAD 462 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHH
Confidence 44444444332233444455555555555555555555554433211 12234445555555555554444433
No 428
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.92 E-value=90 Score=27.13 Aligned_cols=57 Identities=18% Similarity=0.084 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048090 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288 (447)
Q Consensus 228 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 288 (447)
+.....|..+|.+.+|.++.+..... .+.+...|..++..+...|+--.+.+.++++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltl----dpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTL----DPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhc----ChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 33445566666666666666655443 4455556666666666666655555555554
No 429
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=65.53 E-value=62 Score=25.86 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=12.6
Q ss_pred HHHhccCcHHHHHHHHHHHH
Q 048090 305 SACSHTGQVKLGIEYFEWMV 324 (447)
Q Consensus 305 ~~~~~~~~~~~a~~~~~~~~ 324 (447)
..|.+.|.+++|.+++++..
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHHhcCchHHHHHHHHHHh
Confidence 34666666666666666665
No 430
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=65.03 E-value=85 Score=27.17 Aligned_cols=117 Identities=10% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcC--------CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCc
Q 048090 314 KLGIEYFEWMVHDYK--------LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385 (447)
Q Consensus 314 ~~a~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 385 (447)
+....++..+.+. + ++.|...++.|+.- +..++++--+-+++..+.+.......++..++..|++.++.
T Consensus 55 ~~maplYkyL~E~-~n~kt~a~~ikfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~ 131 (412)
T COG5187 55 KCMAPLYKYLAEK-GNPKTSASVIKFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDI 131 (412)
T ss_pred hhhhHHHHHHHhc-cCCcccchheehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhh
Q ss_pred cHHHHHHHHHhh------hCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 048090 386 ELGKLAAQKALE------LDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433 (447)
Q Consensus 386 ~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 433 (447)
+.+.+...+..+ ..-+-.-+-..|+-.|....-.++-++..+.|.++|
T Consensus 132 ~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 132 QNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred hhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
No 431
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=64.93 E-value=50 Score=24.54 Aligned_cols=42 Identities=7% Similarity=-0.024 Sum_probs=34.9
Q ss_pred cHHHHHHHHHhhhC--CCchhHHHHHHHHHHhcCChHHHHHHHH
Q 048090 386 ELGKLAAQKALELD--PHNVGIYVMLSNLYAKFCMWDEIGQLRE 427 (447)
Q Consensus 386 ~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 427 (447)
++...+|+.+.+.+ ..-+..|...+..+...|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44778888887755 5567789999999999999999999886
No 432
>PRK09857 putative transposase; Provisional
Probab=63.99 E-value=63 Score=28.32 Aligned_cols=64 Identities=11% Similarity=0.037 Sum_probs=38.9
Q ss_pred HHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048090 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437 (447)
Q Consensus 374 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 437 (447)
.++......++.++..++++...+..|+......++++-+.+.|..+++.++.++|...|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3443334455555556666555555454444455566666666666777788888888887654
No 433
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=63.64 E-value=1.7e+02 Score=29.63 Aligned_cols=135 Identities=13% Similarity=-0.055 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHh--------cCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCC--CchhhHHHHHHHHHccCCh
Q 048090 68 LYALKTFSFMHV--------HGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL--SSVFVGSALIDLYAKLLLI 137 (447)
Q Consensus 68 ~~a~~~~~~m~~--------~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 137 (447)
++...+++.... .++..+......++..+ .|+...++.+++.+...... .+... =..
T Consensus 171 edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~-----------It~ 237 (725)
T PRK13341 171 EDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLID-----------ITL 237 (725)
T ss_pred HHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCcee-----------ccH
Confidence 445555555543 23455566666666543 68888888887776542110 00000 011
Q ss_pred hhHHHHhcc-------CCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCc-----HHH
Q 048090 138 HDAELMFDE-------IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA-----AEF 205 (447)
Q Consensus 138 ~~a~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~ 205 (447)
+.+.+.+.. -.......-.+++.. ++.+|++.|+..+.+|.+.|..|....-..++.+....|. ...
T Consensus 238 ~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~ 316 (725)
T PRK13341 238 AIAEESIQQRAVLYDKEGDAHFDTISAFIKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVV 316 (725)
T ss_pred HHHHHHHHHhhhhcccCCCCCHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHH
Confidence 122222222 111222233334443 3568999999999999999987776555555555444443 223
Q ss_pred HHHHHHHHHHh
Q 048090 206 GRQVHAYMIRK 216 (447)
Q Consensus 206 a~~~~~~~~~~ 216 (447)
|...++.....
T Consensus 317 ~~~~~~a~~~~ 327 (725)
T PRK13341 317 VEACAAAFERV 327 (725)
T ss_pred HHHHHHHHHHh
Confidence 44444444444
No 434
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=63.42 E-value=81 Score=25.70 Aligned_cols=30 Identities=10% Similarity=0.210 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048090 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291 (447)
Q Consensus 262 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 291 (447)
....+.++..+...|+++.|.+.|.-+...
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 445677888888999999999999998875
No 435
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=63.24 E-value=1.6e+02 Score=29.17 Aligned_cols=61 Identities=13% Similarity=0.085 Sum_probs=41.0
Q ss_pred HHhhhhhhhhhcccccCCcchHHHhhccCCCC--CCccHHHHHHHHHhCCChhhHHHHHHHHHhcCC
Q 048090 18 IFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPR--NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI 82 (447)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 82 (447)
..+..|+..+.... .++...+++++... ....++.+++++...|-.....-+.+.+....+
T Consensus 347 ~~f~~Lv~~lr~l~----~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~ 409 (618)
T PF01347_consen 347 SKFSRLVRLLRTLS----YEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKL 409 (618)
T ss_dssp HHHHHHHHHHTTS-----HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHhcCC----HHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC
Confidence 45777777777775 67777888777655 667888888998888876666555555555433
No 436
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=63.16 E-value=1.2e+02 Score=27.77 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=30.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHh--ccCcHHHHHHHHHHHHH
Q 048090 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEV--AFVTVISACS--HTGQVKLGIEYFEWMVH 325 (447)
Q Consensus 271 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~ 325 (447)
.+.+.+++..|.++++.+... +.++.. .+..+..+|. ..-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344667777777777777765 444433 3333444443 34456666666666654
No 437
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=63.15 E-value=95 Score=27.44 Aligned_cols=132 Identities=16% Similarity=0.064 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCCch
Q 048090 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD----RGHGSSSV 369 (447)
Q Consensus 294 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~ 369 (447)
..|...++.+..+ +..++++-.+..++..+..|-.--...+.....-||+.|+-+.|.+.+++..+ .|.+. |+
T Consensus 67 ~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~ki-DV 143 (393)
T KOG0687|consen 67 KLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKI-DV 143 (393)
T ss_pred eccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccch-hh
Confidence 3344444444332 22334444444555544323333355667777889999999999988776543 44433 33
Q ss_pred H-hHHHHHHHHHhcCCccHHHHHHHHHhhhCCC-----chhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048090 370 S-MWGALLSACHDCGKFELGKLAAQKALELDPH-----NVGIYVMLSNLYAKFCMWDEIGQLRELMK 430 (447)
Q Consensus 370 ~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 430 (447)
. .--.++-.|..+.-+.+-.+..+.+.+.+-+ .-.+|..+ .+....++.+|-.+|-+..
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gl--y~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGL--YCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHH--HHHHHHhHHHHHHHHHHHc
Confidence 2 1122333333433344444455555554432 23344444 3455667888887776554
No 438
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=62.69 E-value=16 Score=31.56 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=21.9
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhH
Q 048090 54 FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYAL 89 (447)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 89 (447)
||.-|....+.||+++|+.++++..+.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 556666666666666666666666666654333333
No 439
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=62.02 E-value=61 Score=24.83 Aligned_cols=55 Identities=24% Similarity=0.253 Sum_probs=29.9
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCC
Q 048090 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384 (447)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 384 (447)
|++++.. -..+++.+...++.-.|.++++++.+.+... +..|-+.-+..+...|-
T Consensus 16 glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~i-slaTVYr~L~~l~e~Gl 70 (145)
T COG0735 16 GLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGI-SLATVYRTLKLLEEAGL 70 (145)
T ss_pred CCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCC-CHhHHHHHHHHHHHCCC
Confidence 6665543 2345566666666677777777777665322 23333344444555543
No 440
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=61.19 E-value=1.2e+02 Score=26.97 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=84.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh------ccCcHHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHHcCC
Q 048090 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS------HTGQVKLGIEYFEWMVHDYKLEPGP-EHYSCLVDLLCRAGE 348 (447)
Q Consensus 276 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~ 348 (447)
+-++++..++++....+. |........|.++- ..-+|.....+|+.+.. +.|++ .+.|.-+ +..+..-
T Consensus 270 ~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAV-Ala~~~G 344 (415)
T COG4941 270 ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAV-ALAMREG 344 (415)
T ss_pred HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHH-HHHHhhh
Confidence 345788888888888764 78888877777653 23467777788887763 46663 4444433 3445555
Q ss_pred HHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCch
Q 048090 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403 (447)
Q Consensus 349 ~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 403 (447)
.+.++...+.+...+--......+..-...+.+.|+.++|...|++++.+-++..
T Consensus 345 p~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 345 PAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred HHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 7778888888776643222233355567778899999999999999998876543
No 441
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=60.75 E-value=37 Score=26.02 Aligned_cols=64 Identities=11% Similarity=0.032 Sum_probs=33.4
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCCh
Q 048090 73 TFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLI 137 (447)
Q Consensus 73 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 137 (447)
+.+.+.+.|++++.. -..++..+...++.-.|.++|+.+.+.+...+..|.-..++.+...|-+
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 334445555554432 2234445555555566666666666665555444444445666666543
No 442
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=60.54 E-value=1.4e+02 Score=27.47 Aligned_cols=58 Identities=12% Similarity=0.006 Sum_probs=41.3
Q ss_pred HHHHHHhcCChHHHHHHHHhhhhhcccCCCcchh--hHHHHHHHHH--hcCCHHHHHHHHHHHHhC
Q 048090 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV--LWTSMLGVYG--RNGYFKEVIKLYEAMLMN 291 (447)
Q Consensus 230 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~a~~~~~~m~~~ 291 (447)
.+..+.+.+++..|.++|+.+... .+++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~r----l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRR----LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh----CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344566899999999999987664 344333 4555555554 366788999999987764
No 443
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=60.39 E-value=1e+02 Score=25.89 Aligned_cols=139 Identities=14% Similarity=0.227 Sum_probs=85.9
Q ss_pred HHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 048090 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309 (447)
Q Consensus 230 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 309 (447)
.+..|...-++..|-..++++.+ | ..+- ..+--|.+..+..--.++.+-....++.-+......++ +..
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiE-------P-IQSR-CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta 204 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIE-------P-IQSR-CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTA 204 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhh-------h-HHhh-hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhc
Confidence 45556666666666666654322 1 1121 22333455555444445555555556666665555554 457
Q ss_pred cCcHHHHHHHHHHHHHhcCC-----------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHH
Q 048090 310 TGQVKLGIEYFEWMVHDYKL-----------EPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378 (447)
Q Consensus 310 ~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~ 378 (447)
.|+..+|+..++.-...+|. .|.+.....++.. +..+++++|.+.+.++-+.|+.|.|. .+.+.++
T Consensus 205 ~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~-~~~~~~~~A~~il~~lw~lgysp~Di--i~~~FRv 281 (333)
T KOG0991|consen 205 QGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQA-CLKRNIDEALKILAELWKLGYSPEDI--ITTLFRV 281 (333)
T ss_pred cchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHH-HHhccHHHHHHHHHHHHHcCCCHHHH--HHHHHHH
Confidence 89999999988877654443 4666666666654 45578999999999999999887655 4556665
Q ss_pred HHhc
Q 048090 379 CHDC 382 (447)
Q Consensus 379 ~~~~ 382 (447)
+-..
T Consensus 282 ~K~~ 285 (333)
T KOG0991|consen 282 VKNM 285 (333)
T ss_pred HHhc
Confidence 5443
No 444
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=60.22 E-value=18 Score=31.33 Aligned_cols=40 Identities=15% Similarity=0.040 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHH
Q 048090 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSA 192 (447)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 192 (447)
.-|+.-|....+.||+++|++++++.++.|+.--..+|..
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 3477888888999999999999999988887655445543
No 445
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=60.12 E-value=54 Score=27.91 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=13.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 048090 338 CLVDLLCRAGELDKAWKLINEM 359 (447)
Q Consensus 338 ~l~~~~~~~g~~~~A~~~~~~~ 359 (447)
.+...|.+.|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3445566666666666666665
No 446
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=59.50 E-value=20 Score=31.06 Aligned_cols=51 Identities=22% Similarity=0.139 Sum_probs=43.4
Q ss_pred HhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048090 380 HDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMK 430 (447)
Q Consensus 380 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 430 (447)
.+.|+.++|..+|+.++.+.|.++.+...++......++.-+|-++|-+..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKAL 177 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence 467899999999999999999999999999988777778878877766543
No 447
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=59.17 E-value=1.3e+02 Score=26.66 Aligned_cols=169 Identities=11% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 048090 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309 (447)
Q Consensus 230 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 309 (447)
+++.-.+..++..-++.-....+. .+.....|-.+.. -..--..+|+++|++..+.+-. .|.+
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeI----N~eCA~AyvLLAE--EEa~Ti~~AE~l~k~ALka~e~-----------~yr~ 252 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEI----NNECATAYVLLAE--EEATTIVDAERLFKQALKAGET-----------IYRQ 252 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhc----CchhhhHHHhhhh--hhhhhHHHHHHHHHHHHHHHHH-----------HHhh
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHH
Q 048090 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389 (447)
Q Consensus 310 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 389 (447)
..+...--...+.+.++ ....-+..-..|.-+..+.|+..+|.+.++++.+.--...-..+...|+.++....-+.+..
T Consensus 253 sqq~qh~~~~~da~~rR-Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvq 331 (556)
T KOG3807|consen 253 SQQCQHQSPQHEAQLRR-DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQ 331 (556)
T ss_pred HHHHhhhccchhhhhhc-ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhC-CCchhHHHHHHHHHHhc
Q 048090 390 LAAQKALELD-PHNVGIYVMLSNLYAKF 416 (447)
Q Consensus 390 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 416 (447)
.++-+.-++. |.+..+...-+..-.+.
T Consensus 332 avLakYDdislPkSA~icYTaALLK~RA 359 (556)
T KOG3807|consen 332 AVLAKYDDISLPKSAAICYTAALLKTRA 359 (556)
T ss_pred HHHHhhccccCcchHHHHHHHHHHHHHH
No 448
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=59.04 E-value=29 Score=21.90 Aligned_cols=24 Identities=8% Similarity=0.045 Sum_probs=11.6
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHH
Q 048090 192 ALLRACAGLSAAEFGRQVHAYMIR 215 (447)
Q Consensus 192 ~l~~~~~~~~~~~~a~~~~~~~~~ 215 (447)
.++.++...|++++|.+++..+.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444555555555555555554444
No 449
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=58.25 E-value=1.1e+02 Score=25.44 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCC-------HHHHHHHHHHHHhCCCCC----CchHhHHHHHHHHHhcCCccHHHHHHHHHhhhC
Q 048090 337 SCLVDLLCRAGE-------LDKAWKLINEMLDRGHGS----SSVSMWGALLSACHDCGKFELGKLAAQKALELD 399 (447)
Q Consensus 337 ~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 399 (447)
..+...|...|+ ...|.+.|.+.....-.| +...+...++....+.|+.++|.+.|.+++...
T Consensus 122 LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 122 LRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 334444445555 334555666655443222 234456667777788888888888888887755
No 450
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=58.19 E-value=96 Score=24.86 Aligned_cols=49 Identities=16% Similarity=0.295 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhcCCCCC--hhhHHH-----HHHHHHHcCCHHHHHHHHHHHHhC
Q 048090 313 VKLGIEYFEWMVHDYKLEPG--PEHYSC-----LVDLLCRAGELDKAWKLINEMLDR 362 (447)
Q Consensus 313 ~~~a~~~~~~~~~~~~~~~~--~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~ 362 (447)
.+.|+.+|+.+.+... .|. ...... .+-.|.+.|.+++|.+++++....
T Consensus 85 LESAl~v~~~I~~E~~-~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 85 LESALMVLESIEKEFS-LPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC
Confidence 6788888888877632 221 222222 234577888888888888888774
No 451
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=58.08 E-value=98 Score=28.56 Aligned_cols=61 Identities=13% Similarity=0.073 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH------hCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 048090 337 SCLVDLLCRAGELDKAWKLINEML------DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE 397 (447)
Q Consensus 337 ~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 397 (447)
..|++.++-.|++..|+++++.+- -..+.+-.++++..++-+|...+++.+|.+.|...+-
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788999999999987652 1233455677888999999999999999999987764
No 452
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.50 E-value=44 Score=27.03 Aligned_cols=46 Identities=17% Similarity=0.114 Sum_probs=34.3
Q ss_pred HHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCC
Q 048090 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400 (447)
Q Consensus 352 A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 400 (447)
..+..++..+.. | ++.++..++.++...|+.++|.+..+++...-|
T Consensus 130 ~~~~a~~~l~~~--P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 130 YIEWAERLLRRR--P-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHhC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 334444444443 4 666688889999999999999999998888888
No 453
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=57.40 E-value=70 Score=23.03 Aligned_cols=27 Identities=22% Similarity=0.243 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 048090 154 CANALLSGYCEAKLWAGGLELVRLMPA 180 (447)
Q Consensus 154 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (447)
-|..|+..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467777777777777777777777665
No 454
>PRK12798 chemotaxis protein; Reviewed
Probab=57.29 E-value=1.6e+02 Score=27.16 Aligned_cols=195 Identities=13% Similarity=0.083 Sum_probs=120.7
Q ss_pred cCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccC
Q 048090 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG-RNGYFKEVIKLYEAMLMNGTKPD----EVAFVTVISACSHTG 311 (447)
Q Consensus 237 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~ 311 (447)
.|+.++|.+.+..+... ..++....|-.|+.+-. ...+..+|+++|+..+-. .|. ......-+......|
T Consensus 125 ~Gr~~~a~~~La~i~~~---~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g 199 (421)
T PRK12798 125 SGRGREARKLLAGVAPE---YLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLG 199 (421)
T ss_pred cCCHHHHHHHhhcCChh---hcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcC
Confidence 68889999888744332 45666667777776544 456788999999987663 443 344555555667889
Q ss_pred cHHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHH
Q 048090 312 QVKLGIEYFEWMVHDYKLEPGPE-HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKL 390 (447)
Q Consensus 312 ~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 390 (447)
+.+++..+-.....++.-.|-.. .+..+..++.+.++-..- +-+.+++..--.+....+|..+.+.-.-.|+.+.|.-
T Consensus 200 ~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~ 278 (421)
T PRK12798 200 DADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALIDGKTELARF 278 (421)
T ss_pred cHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 99998888888877766556433 334444555554432222 1233333321113355578888888889999999999
Q ss_pred HHHHHhhhCCC----chhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048090 391 AAQKALELDPH----NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437 (447)
Q Consensus 391 ~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 437 (447)
.-+++..+..+ .......-.-+-.-..++++|.+.++.+-...+.|.
T Consensus 279 As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~ 329 (421)
T PRK12798 279 ASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSER 329 (421)
T ss_pred HHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChh
Confidence 99988887622 111111111122345667778777776655555443
No 455
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=56.39 E-value=37 Score=26.83 Aligned_cols=39 Identities=5% Similarity=-0.115 Sum_probs=19.4
Q ss_pred CCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCCh
Q 048090 99 VKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLI 137 (447)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 137 (447)
..+.-.|.++++.+.+.+...+..|.-.-+..+.+.|-+
T Consensus 38 ~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 38 QPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred cCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344445555555555555444444433344555555543
No 456
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=56.37 E-value=32 Score=18.83 Aligned_cols=17 Identities=18% Similarity=0.094 Sum_probs=6.7
Q ss_pred HHHHHHhcCCccHHHHH
Q 048090 375 LLSACHDCGKFELGKLA 391 (447)
Q Consensus 375 l~~~~~~~g~~~~a~~~ 391 (447)
+.-.+...|++++|..+
T Consensus 7 ~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 33334444444444444
No 457
>PHA02875 ankyrin repeat protein; Provisional
Probab=56.24 E-value=1.7e+02 Score=27.14 Aligned_cols=194 Identities=12% Similarity=-0.022 Sum_probs=100.9
Q ss_pred CcchHHHhhccCCCCCCcc--HHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchh--hHHHHHHHhccCCchhHHHHHHH
Q 048090 35 NLGTLTNCLKFLNPRNPLP--FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTY--ALCSSLTASTSVKDARFGKQVQA 110 (447)
Q Consensus 35 ~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~ 110 (447)
+.+.+..+++.-..++... ..+.+...++.|+.+ +.+.+.+.|..|+.. ...+.+...+..|+.+.+..+++
T Consensus 14 ~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 14 ELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred CHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 5777777777654444322 233445556677764 455566677665532 12334555667788776655554
Q ss_pred HHHHcCCCCch---hhHHHHHHHHHccCChhhHHHHhccCCCCc---hhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCC
Q 048090 111 HVTKSGWLSSV---FVGSALIDLYAKLLLIHDAELMFDEIPVKN---SVCANALLSGYCEAKLWAGGLELVRLMPALGLD 184 (447)
Q Consensus 111 ~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (447)
.|...+. ..-.+.+...+..|+.+-+..+++.-..++ ....+. +...+..|+.+-+..+++ .|..
T Consensus 90 ----~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tp-Lh~A~~~~~~~~v~~Ll~----~g~~ 160 (413)
T PHA02875 90 ----LGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSP-LHLAVMMGDIKGIELLID----HKAC 160 (413)
T ss_pred ----cCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHh----cCCC
Confidence 4422211 111234555667788888887877654432 222333 344456777766555544 3333
Q ss_pred C---cHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhH---HHHHHHHHHhcCChHHHHHHHH
Q 048090 185 Y---DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM---QSSLIEMYGKCGLVTKALQVFN 248 (447)
Q Consensus 185 ~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~ 248 (447)
+ |....+.+..+ +..|+.+ +.+.+++. |..++... ..+.+...+..|+.+-+.-+++
T Consensus 161 ~~~~d~~g~TpL~~A-~~~g~~e----iv~~Ll~~--ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~ 223 (413)
T PHA02875 161 LDIEDCCGCTPLIIA-MAKGDIA----ICKMLLDS--GANIDYFGKNGCVAALCYAIENNKIDIVRLFIK 223 (413)
T ss_pred CCCCCCCCCCHHHHH-HHcCCHH----HHHHHHhC--CCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH
Confidence 2 22233333333 3446554 34445555 44444322 2345555566777766655554
No 458
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.02 E-value=15 Score=36.70 Aligned_cols=27 Identities=15% Similarity=0.366 Sum_probs=13.5
Q ss_pred hHhHHHHHHHHHhcCCccHHHHHHHHH
Q 048090 369 VSMWGALLSACHDCGKFELGKLAAQKA 395 (447)
Q Consensus 369 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 395 (447)
...|..|+......|+.+-|+..|++.
T Consensus 672 ~d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 672 KDVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 334555555555555555555555443
No 459
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=55.74 E-value=36 Score=24.67 Aligned_cols=47 Identities=9% Similarity=0.082 Sum_probs=29.5
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCch
Q 048090 56 VVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102 (447)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 102 (447)
.++..+...+..-.|.++++.+.+.+..++..|....++.+.+.|-+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 34555555666667777777777766666666665556665555543
No 460
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=55.64 E-value=28 Score=31.89 Aligned_cols=64 Identities=9% Similarity=0.072 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhc-----CCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048090 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDY-----KLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLD 361 (447)
Q Consensus 298 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 361 (447)
.+...|++..+-.|++..|+++++.+.-.. .+.+ .+.++-.+.-+|.-.+++.+|.+.|...+-
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888899999999999998763210 1122 245666777788999999999999988764
No 461
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=55.63 E-value=1.3e+02 Score=26.45 Aligned_cols=44 Identities=7% Similarity=-0.015 Sum_probs=26.5
Q ss_pred HHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 048090 173 ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 216 (447)
++|+.+.+.++.|.-..+..+.-.+.+.=.+..+..+++.+...
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD 307 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD 307 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC
Confidence 45555666666666666665555555555666666666666553
No 462
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=55.25 E-value=1.4e+02 Score=26.56 Aligned_cols=98 Identities=15% Similarity=0.132 Sum_probs=74.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhhHH
Q 048090 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT---KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG-PEHYS 337 (447)
Q Consensus 262 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 337 (447)
...|.-=.+-|.+.+++..|...|.+-++... ..+...|+.-..+-...|++..|+.=....+ .++|+ ...|-
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al---~~~P~h~Ka~~ 157 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAAL---KLKPTHLKAYI 157 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---hcCcchhhhhh
Confidence 44566677788899999999999998877642 2345677777777778899988888877776 45776 56666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC
Q 048090 338 CLVDLLCRAGELDKAWKLINEMLDR 362 (447)
Q Consensus 338 ~l~~~~~~~g~~~~A~~~~~~~~~~ 362 (447)
.=..++....++++|....++....
T Consensus 158 R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 158 RGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 6667788888999999988887554
No 463
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.76 E-value=72 Score=22.41 Aligned_cols=54 Identities=13% Similarity=0.009 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHH
Q 048090 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406 (447)
Q Consensus 352 A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 406 (447)
..+.++++...+... .+.....|...|.+.|+.+.|.+-|+.-....|.+....
T Consensus 56 le~~~ek~~ak~~~v-pPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fm 109 (121)
T COG4259 56 LEKYLEKIGAKNGAV-PPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFM 109 (121)
T ss_pred HHHHHHHHhhcCCCC-CCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHH
Confidence 344455554443321 222345566666666666666666666666666555433
No 464
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=54.43 E-value=88 Score=23.27 Aligned_cols=60 Identities=7% Similarity=-0.050 Sum_probs=43.2
Q ss_pred CchHhHHHHHHHHHhcCCccHHHHHHHHHhhhC--CCchhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048090 367 SSVSMWGALLSACHDCGKFELGKLAAQKALELD--PHNVGIYVMLSNLYAKFCMWDEIGQLRELM 429 (447)
Q Consensus 367 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 429 (447)
+|.. |..+=..|++ ..+.+..+|+.+...+ ..-+.+|...+..+...|++++|.++++.-
T Consensus 64 nD~R-ylkiWi~ya~--~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 64 NDER-YLKIWIKYAD--LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp T-HH-HHHHHHHHHT--TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHH--HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 3444 3333334444 2338999999998755 668889999999999999999999998753
No 465
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=53.80 E-value=45 Score=19.70 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=19.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048090 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVIS 305 (447)
Q Consensus 273 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 305 (447)
.+.|-..++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345555666666666666666666666555543
No 466
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=52.02 E-value=2.6e+02 Score=28.18 Aligned_cols=25 Identities=24% Similarity=0.065 Sum_probs=17.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCc
Q 048090 413 YAKFCMWDEIGQLRELMKEKGLKKDVG 439 (447)
Q Consensus 413 ~~~~g~~~~A~~~~~~m~~~~~~p~~~ 439 (447)
-.-++++.+|.+.-+.|.+ ++|-.+
T Consensus 376 sVLAnd~~kaiqAae~mfK--Lk~P~W 400 (1226)
T KOG4279|consen 376 SVLANDYQKAIQAAEMMFK--LKPPVW 400 (1226)
T ss_pred hhhccCHHHHHHHHHHHhc--cCCcee
Confidence 3456788899888888876 445443
No 467
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=51.34 E-value=33 Score=25.13 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=23.2
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCC
Q 048090 56 VVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK 100 (447)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 100 (447)
.++..+...+.+-.|.++++.+.+.+...+..|.-..+..+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 345555555556666666666666555555555444444444443
No 468
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=51.26 E-value=55 Score=28.03 Aligned_cols=59 Identities=19% Similarity=0.126 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 373 GALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 373 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
..+-.++...++++.|....++.+..+|.++.-+.--+-+|.+.|...-|++-++....
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 34455788899999999999999999999998888889999999999999999888655
No 469
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=51.13 E-value=1.3e+02 Score=24.33 Aligned_cols=161 Identities=13% Similarity=0.069 Sum_probs=0.0
Q ss_pred hcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHc--------CCCCchhhHHHHHHHHHccCChhhHHHHhccCC--
Q 048090 79 VHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKS--------GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP-- 148 (447)
Q Consensus 79 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-- 148 (447)
+.|..++...++.++..+.+..-...-....-.+..+ +...+......-+..|.+.||+.+.-.+|-...
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g 80 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG 80 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh
Q ss_pred -----------------------CCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHH
Q 048090 149 -----------------------VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF 205 (447)
Q Consensus 149 -----------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 205 (447)
..-.+.|..+...-++.-+.+++-+.+---... +++-.|.+.-+|.+
T Consensus 81 ce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGi----------S~m~~Yhk~~qW~K 150 (233)
T PF14669_consen 81 CEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGI----------SLMYSYHKTLQWSK 150 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHH----------HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHh------------hhcCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 048090 206 GRQVHAYMIRK------------CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249 (447)
Q Consensus 206 a~~~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 249 (447)
+.++++.+.+. ..+..+.-...|.....+.+.|.+|.|..++++
T Consensus 151 GrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 151 GRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 470
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=50.69 E-value=52 Score=29.29 Aligned_cols=68 Identities=10% Similarity=0.113 Sum_probs=47.4
Q ss_pred HcCC-HHHHHHHHHHHHhCCCCCCc---hHhHHHHHHHHHhcCCccHHHHHHHHHhhhCC-CchhHHHHHHHHHH
Q 048090 345 RAGE-LDKAWKLINEMLDRGHGSSS---VSMWGALLSACHDCGKFELGKLAAQKALELDP-HNVGIYVMLSNLYA 414 (447)
Q Consensus 345 ~~g~-~~~A~~~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~ 414 (447)
..|- .+++..++.+++..= |+- ...|..++......|.++..+.+|++++..+. |-......++..+-
T Consensus 114 ~eGcp~eei~~~L~~li~~I--P~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 114 EEGCPKEEILATLSDLIKNI--PDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HcCCCHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3443 568888888888762 422 23588888888899999999999999998873 34445555555443
No 471
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=50.59 E-value=80 Score=21.65 Aligned_cols=66 Identities=6% Similarity=-0.107 Sum_probs=36.3
Q ss_pred hHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhH
Q 048090 69 YALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140 (447)
Q Consensus 69 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 140 (447)
.+.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. +| +..|...++++...|.-+-|
T Consensus 20 ~~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 20 KTRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 345566666666643 33333333333345567777777777766 43 23455666666666654444
No 472
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=49.37 E-value=18 Score=26.94 Aligned_cols=32 Identities=31% Similarity=0.640 Sum_probs=19.5
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHH
Q 048090 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379 (447)
Q Consensus 345 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~ 379 (447)
..|.-..|..+|++|++.|-.|++ |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd---W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD---WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc---HHHHHHHh
Confidence 345556677777777777764432 66666543
No 473
>PRK14700 recombination factor protein RarA; Provisional
Probab=49.07 E-value=1.9e+02 Score=25.47 Aligned_cols=122 Identities=9% Similarity=-0.064 Sum_probs=69.2
Q ss_pred CCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCC---CCchhhHHHH
Q 048090 82 IFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP---VKNSVCANAL 158 (447)
Q Consensus 82 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l 158 (447)
+..+......++.. ..||...|+.+++.+.......+. .. + ..+...+++.+-. ..+...+-.+
T Consensus 63 ~~i~~~al~~ia~~--a~GDaR~aLN~LE~a~~~~~~~~~-~~---i-------t~~~~~~~~~~~~~~yDk~gd~HYd~ 129 (300)
T PRK14700 63 FKIDDGLYNAMHNY--NEGDCRKILNLLERMFLISTRGDE-IY---L-------NKELFDQAVGETSRDFHREGKEFYEQ 129 (300)
T ss_pred CCcCHHHHHHHHHh--cCCHHHHHHHHHHHHHhhccccCC-Cc---c-------CHHHHHHHHhHHHhcccCCcchhHHH
Confidence 45566666666654 478999999998886642101110 00 0 1122222221111 1233344445
Q ss_pred HHHHHh---cCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCc-----HHHHHHHHHHHHHh
Q 048090 159 LSGYCE---AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA-----AEFGRQVHAYMIRK 216 (447)
Q Consensus 159 ~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~ 216 (447)
++++.+ -.|++.|+-.+.+|.+.|-.|....-..++.+.-.-|. ...|...++....-
T Consensus 130 iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~i 195 (300)
T PRK14700 130 LSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKL 195 (300)
T ss_pred HHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Confidence 666654 57899999999999999977877777666666655553 23444445544444
No 474
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=48.87 E-value=64 Score=20.37 Aligned_cols=48 Identities=8% Similarity=-0.014 Sum_probs=28.5
Q ss_pred HHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHh-----ccCCchhHHHHH
Q 048090 61 FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTAS-----TSVKDARFGKQV 108 (447)
Q Consensus 61 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-----~~~~~~~~a~~~ 108 (447)
+...|++-+|.++++.+-.....|....+..+|..+ .+.|+.+.|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 455788888888888886543334555666666543 344555555544
No 475
>PRK12798 chemotaxis protein; Reviewed
Probab=48.78 E-value=2.2e+02 Score=26.29 Aligned_cols=232 Identities=8% Similarity=-0.099 Sum_probs=115.8
Q ss_pred HccCChhhHHHHhccCCCCchh-hHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHH-HhcCCcHHHHHHH
Q 048090 132 AKLLLIHDAELMFDEIPVKNSV-CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA-CAGLSAAEFGRQV 209 (447)
Q Consensus 132 ~~~g~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~ 209 (447)
..-|+++-...++..-..++.. ....-+..| -.|+..++.+.+..+.....++....|..|+.+ .....+...|.++
T Consensus 92 lSGGnP~vlr~L~~~d~~~~~d~~L~~g~laY-~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~ 170 (421)
T PRK12798 92 LSGGNPATLRKLLARDKLGNFDQRLADGALAY-LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKL 170 (421)
T ss_pred hcCCCHHHHHHHHHcCCCChhhHHHHHHHHHH-HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHH
Confidence 3445666666655554433221 111122223 357777777777777666566666666666665 3445667777777
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048090 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289 (447)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 289 (447)
|+...-..||--........-+......|+.++...+-.....+...++ --...+..+..++.+.++-..- ..+..+.
T Consensus 171 lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~-YA~~F~~~F~~~~~~~~d~~~~-~~l~~~l 248 (421)
T PRK12798 171 LDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSP-YASQFAQRFVDLVVRLDDEIRD-ARLVEIL 248 (421)
T ss_pred HHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCc-hHHHHHHHHHHHHHhccccccH-HHHHHHH
Confidence 7777665333211122233334445666777766555443333311111 1111223333344443322211 1122332
Q ss_pred hCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHH-----HHcCCHHHHHHHHHHHHhC
Q 048090 290 MNGTKPD--EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL-----CRAGELDKAWKLINEMLDR 362 (447)
Q Consensus 290 ~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~ 362 (447)
.. ..|+ ...|..+.+.-.-.|+.+.|.-.-++...- . .....-......| .-..+++++.+.+..+-..
T Consensus 249 s~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L-~--~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~ 324 (421)
T PRK12798 249 SF-MDPERQRELYLRIARAALIDGKTELARFASERALKL-A--DPDSADAARARLYRGAALVASDDAESALEELSQIDRD 324 (421)
T ss_pred Hh-cCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh-c--cCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChh
Confidence 22 1222 346777777777788887777766666543 1 1111111122222 2345577777777777666
Q ss_pred CCCCCchH
Q 048090 363 GHGSSSVS 370 (447)
Q Consensus 363 ~~~p~~~~ 370 (447)
...|.|..
T Consensus 325 ~L~~~Dr~ 332 (421)
T PRK12798 325 KLSERDRA 332 (421)
T ss_pred hCChhhHH
Confidence 66665554
No 476
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=48.27 E-value=1.1e+02 Score=22.56 Aligned_cols=21 Identities=19% Similarity=0.263 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHhcCChHHHH
Q 048090 224 VFMQSSLIEMYGKCGLVTKAL 244 (447)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~A~ 244 (447)
...+..|..++...|++++++
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L 75 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECL 75 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHH
Confidence 334455555566666655543
No 477
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=47.49 E-value=1.2e+02 Score=29.86 Aligned_cols=79 Identities=9% Similarity=0.015 Sum_probs=47.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhhcC--CCCcHhhHHHHHHHHhcCCcHHH--HHHHHHHHHHhhhcCCCChhHHHHHHH
Q 048090 157 ALLSGYCEAKLWAGGLELVRLMPALG--LDYDHFTLSALLRACAGLSAAEF--GRQVHAYMIRKCCNLGNDVFMQSSLIE 232 (447)
Q Consensus 157 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (447)
.|..+|...|++..+.++++.+.... -+.-...++..++...+.|.++- +..-....++.. .+.-|..+|..+++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a-~ln~d~~t~all~~ 111 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA-RLNGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh-hcCCcchHHHHHHH
Confidence 78888888888888888888876542 22223456666777777776542 222233333331 34556666666665
Q ss_pred HHHh
Q 048090 233 MYGK 236 (447)
Q Consensus 233 ~~~~ 236 (447)
+...
T Consensus 112 ~sln 115 (1117)
T COG5108 112 ASLN 115 (1117)
T ss_pred hhcC
Confidence 5444
No 478
>PF14649 Spatacsin_C: Spatacsin C-terminus
Probab=47.48 E-value=2e+02 Score=25.33 Aligned_cols=129 Identities=11% Similarity=0.071 Sum_probs=62.8
Q ss_pred CHHHHHHHH---HHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhH
Q 048090 296 DEVAFVTVI---SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372 (447)
Q Consensus 296 ~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 372 (447)
.......+| .++......|....+++........-....-|..+++.....|++.+..-+|+-+++.+- |
T Consensus 19 ~~~~VELLI~AH~cf~~~c~meGi~~vl~~~~~~~~~l~~~~~~~llvRLltGi~ry~em~yifd~L~~n~q-------f 91 (296)
T PF14649_consen 19 LSCIVELLIRAHDCFTLSCSMEGIAVVLQAAKSLVNHLAAEGDWSLLVRLLTGIGRYREMTYIFDILIENDQ-------F 91 (296)
T ss_pred ccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHccCcHHHHHHHHHHHHHcCh-------H
Confidence 344444455 334455555555555554433211122344567777777777777777777777766541 4
Q ss_pred HHHHHHHHhc-CCccHHHHHHHHHhhhCCCchhHHHHHHHH---HHhcCC--hHHHHHHHHHHHHcC
Q 048090 373 GALLSACHDC-GKFELGKLAAQKALELDPHNVGIYVMLSNL---YAKFCM--WDEIGQLRELMKEKG 433 (447)
Q Consensus 373 ~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~--~~~A~~~~~~m~~~~ 433 (447)
..|+.-.... +.+.. .+.+-..+..|.|...+..+..- |...|. ..+|...++.+...+
T Consensus 92 E~LL~k~~d~~~~lk~--all~ylk~~~P~d~e~~~mv~l~F~m~~Eia~~~e~~A~~~l~~l~~~~ 156 (296)
T PF14649_consen 92 ELLLRKGIDKVNGLKM--ALLDYLKRCCPEDKEKFSMVALHFNMYREIAELWEKRARQILKKLVSQP 156 (296)
T ss_pred HHHHhccccccchHHH--HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444332211 11111 11222223457777666655433 333332 234555666555543
No 479
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=47.27 E-value=2.6e+02 Score=26.60 Aligned_cols=73 Identities=15% Similarity=0.265 Sum_probs=57.4
Q ss_pred CCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHh--cCChHHHHHHHHHHHH-cCCCCCC
Q 048090 366 SSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAK--FCMWDEIGQLRELMKE-KGLKKDV 438 (447)
Q Consensus 366 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~-~~~~p~~ 438 (447)
|...+.-+.++..+...|-..+|...+.....+-|++...|..+++.-.. +-+...+..+++.|.. .|-.|+.
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDL 532 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHH
Confidence 55566567788888999999999999999999999999999988876432 2347778889998875 6755554
No 480
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=47.14 E-value=2e+02 Score=25.29 Aligned_cols=155 Identities=9% Similarity=-0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCC-
Q 048090 70 ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP- 148 (447)
Q Consensus 70 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~- 148 (447)
|.++|+.... ....+.++.++.+.+--+.-.++| ||+..+-......+...|--+-..-.=.++.
T Consensus 186 ~~~lFk~~~~------Ek~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~agL~elvey~~~q~~~ 251 (412)
T KOG2297|consen 186 AVKLFKEWLV------EKDINDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTDAGLKELVEYHRNQQSE 251 (412)
T ss_pred HHHHHHHHHh------hccHHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhHhhHHHHHHHHHHHHHH
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHH
Q 048090 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228 (447)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 228 (447)
..-...-..|..-..+...+++......+-.+..--|++.....+-++......|.+-.++...-.-+ ....|.
T Consensus 252 ~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalr------hlK~ya 325 (412)
T KOG2297|consen 252 GARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALR------HLKQYA 325 (412)
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH------HHHhhh
Q ss_pred HHHHHHHhcCChHHHH
Q 048090 229 SLIEMYGKCGLVTKAL 244 (447)
Q Consensus 229 ~l~~~~~~~g~~~~A~ 244 (447)
.|+.+++..|+.+..+
T Consensus 326 PLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 326 PLLAAFCSQGQSELEL 341 (412)
T ss_pred HHHHHHhcCChHHHHH
No 481
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=46.36 E-value=1.9e+02 Score=28.53 Aligned_cols=82 Identities=16% Similarity=0.064 Sum_probs=54.4
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhc-ccCCCcchhhHHHHHH
Q 048090 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL-EGEINKDVVLWTSMLG 270 (447)
Q Consensus 192 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~l~~ 270 (447)
+++.+|...|++..+.++++.......+-..-...+|..++...+.|.++-. ++...+.+.. .....-|..||..|++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~-~~~~~~~~~lq~a~ln~d~~t~all~~ 111 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELT-DVLSNAKELLQQARLNGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHH-HHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 7889999999999999999988887545455567788888888888876432 2222211111 1124556677777766
Q ss_pred HHHh
Q 048090 271 VYGR 274 (447)
Q Consensus 271 ~~~~ 274 (447)
+-..
T Consensus 112 ~sln 115 (1117)
T COG5108 112 ASLN 115 (1117)
T ss_pred hhcC
Confidence 6544
No 482
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=45.93 E-value=90 Score=21.23 Aligned_cols=14 Identities=7% Similarity=0.093 Sum_probs=5.8
Q ss_pred hhHHHHHHHHHHHc
Q 048090 102 ARFGKQVQAHVTKS 115 (447)
Q Consensus 102 ~~~a~~~~~~~~~~ 115 (447)
.+.+.++++.+..+
T Consensus 46 ~~q~~~LLd~L~~R 59 (84)
T cd08326 46 RDQARQLLIDLETR 59 (84)
T ss_pred HHHHHHHHHHHHhc
Confidence 34444444444433
No 483
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=45.73 E-value=17 Score=24.69 Aligned_cols=56 Identities=13% Similarity=0.021 Sum_probs=28.2
Q ss_pred hhccCCCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCc
Q 048090 42 CLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKD 101 (447)
Q Consensus 42 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 101 (447)
+++.+.+..+.+....-..-+...+.+++.++++.+..+| ..+|..+..++...|.
T Consensus 21 v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 21 LWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRG----KQAFPAFLSALRETGQ 76 (84)
T ss_pred HHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCc
Confidence 4444444455554444444444455566666666655554 3345555555544443
No 484
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=44.89 E-value=2.6e+02 Score=26.04 Aligned_cols=50 Identities=18% Similarity=0.158 Sum_probs=27.4
Q ss_pred HHHHHHHHhCCCCCCchH-hHHHHHHHHHhcCCccHHHHHHHHHhhhCCCc
Q 048090 353 WKLINEMLDRGHGSSSVS-MWGALLSACHDCGKFELGKLAAQKALELDPHN 402 (447)
Q Consensus 353 ~~~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 402 (447)
+++.--+...++.|.... +...-+..+.+.+++..|..+.++++++.|+.
T Consensus 283 lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 283 LELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 344444444444442221 34555666677888888888888888877654
No 485
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=44.64 E-value=1.7e+02 Score=23.74 Aligned_cols=15 Identities=13% Similarity=0.399 Sum_probs=7.8
Q ss_pred cCcHHHHHHHHHHHH
Q 048090 310 TGQVKLGIEYFEWMV 324 (447)
Q Consensus 310 ~~~~~~a~~~~~~~~ 324 (447)
.|+++.|.+.++-|.
T Consensus 134 ~~~~~~Ae~~~~~ME 148 (204)
T COG2178 134 KGSFEEAERFLKFME 148 (204)
T ss_pred hccHHHHHHHHHHHH
Confidence 455555555555554
No 486
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=43.92 E-value=1.2e+02 Score=21.91 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=19.8
Q ss_pred HHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHH
Q 048090 388 GKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIG 423 (447)
Q Consensus 388 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 423 (447)
+.+.+.+...+.|........+++-+.....++++.
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v 98 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAV 98 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHH
Confidence 455666666677766555555554433344444443
No 487
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=43.43 E-value=1.4e+02 Score=22.76 Aligned_cols=46 Identities=11% Similarity=0.093 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCC
Q 048090 373 GALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCM 418 (447)
Q Consensus 373 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 418 (447)
..........|++.-|.++.+.++..+|+|.......+.+|...|.
T Consensus 74 l~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 74 LERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3444445556677777777777777777777777766666655543
No 488
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=42.98 E-value=2.4e+02 Score=25.08 Aligned_cols=114 Identities=7% Similarity=0.024 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHh---cCCCCChhhHHHHHH-HHHHcCCHHHHHHHHHHHHhCCCCCCchHhHH
Q 048090 298 VAFVTVISACSHTGQVKLGIEYFEWMVHD---YKLEPGPEHYSCLVD-LLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373 (447)
Q Consensus 298 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 373 (447)
........-||+.|+.+.|.+.+.+...+ .|.+.|+..+..-+. .|....-..+-++..+.+.+.|...+...-+.
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 45566677899999999999988776543 255566554433222 23333445666666777777775433222122
Q ss_pred HH-HHHHHhcCCccHHHHHHHHHhhhC-CCchhHHHHHHH
Q 048090 374 AL-LSACHDCGKFELGKLAAQKALELD-PHNVGIYVMLSN 411 (447)
Q Consensus 374 ~l-~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~ 411 (447)
.. +-.|....++.+|-.+|-..+.-. .-....|..++.
T Consensus 185 vY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~ 224 (393)
T KOG0687|consen 185 VYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVR 224 (393)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHH
Confidence 21 223445667888888887766544 333444555443
No 489
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=42.95 E-value=2.2e+02 Score=24.51 Aligned_cols=155 Identities=10% Similarity=-0.030 Sum_probs=70.4
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCch-----hHHHHHHHHHHHcCCCCchhhHHHH
Q 048090 53 PFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA-----RFGKQVQAHVTKSGWLSSVFVGSAL 127 (447)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l 127 (447)
..+.++..+.+.+....|.++.+.+..... =......++......... ......+....+. +...+ .|..+
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~l~~--F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~l-l~~f~-~~l~I 159 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRSLPY--FSHALELLLHTVLEEEADSSEDSPIPDALLPRVISL-LQEFP-EYLEI 159 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhccCCC--cHHHHHHHHHHHHhhcccccccccchHHHHHHHHHH-HHcCc-chHHH
Confidence 356788888888888889888888765321 123333333322211111 1112222222221 01111 12333
Q ss_pred HHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCC-CC-----cHhhHHHHHHHHhcCC
Q 048090 128 IDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGL-DY-----DHFTLSALLRACAGLS 201 (447)
Q Consensus 128 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-----~~~~~~~l~~~~~~~~ 201 (447)
+..|.|.=+...=..+|+.+..| ..|+..|.+.|+.+.|-.++--+...+- .. +...-..++......+
T Consensus 160 vv~C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~ 234 (258)
T PF07064_consen 160 VVNCARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESG 234 (258)
T ss_pred HHHHHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcc
Confidence 33344433333334445544322 2455566666666666655554433220 11 1112223344444555
Q ss_pred cHHHHHHHHHHHHHh
Q 048090 202 AAEFGRQVHAYMIRK 216 (447)
Q Consensus 202 ~~~~a~~~~~~~~~~ 216 (447)
+|+.+.++.+.+...
T Consensus 235 ~w~Lc~eL~RFL~~l 249 (258)
T PF07064_consen 235 DWDLCFELVRFLKAL 249 (258)
T ss_pred cHHHHHHHHHHHHHh
Confidence 555555555555443
No 490
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.60 E-value=2.8e+02 Score=25.61 Aligned_cols=65 Identities=6% Similarity=-0.159 Sum_probs=42.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhhhhcC--CCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 048090 152 SVCANALLSGYCEAKLWAGGLELVRLMPALG--LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216 (447)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 216 (447)
...+..+...|...|+++.|++.|.+...-- .+-....|..+|....-.|+|..+.....+..+.
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 3456777778888888888888887754321 1223334555666666677777777777776654
No 491
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=40.31 E-value=2.4e+02 Score=24.25 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=10.6
Q ss_pred HHHHHHHHhcCChHHHHHHHH
Q 048090 228 SSLIEMYGKCGLVTKALQVFN 248 (447)
Q Consensus 228 ~~l~~~~~~~g~~~~A~~~~~ 248 (447)
..++..+.+.+....|..+.+
T Consensus 86 ~~iL~~lL~~~~~~~a~~i~~ 106 (258)
T PF07064_consen 86 HHILRHLLRRNLDEEALEIAS 106 (258)
T ss_pred HHHHHHHHhcCCcHHHHHHHH
Confidence 344444555555555555544
No 492
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=40.29 E-value=1.8e+02 Score=22.82 Aligned_cols=125 Identities=10% Similarity=0.031 Sum_probs=65.6
Q ss_pred CcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcC----Ccc
Q 048090 311 GQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG----KFE 386 (447)
Q Consensus 311 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----~~~ 386 (447)
++-+.|...++.+...++.+.........+..-...|.+.+|.+++.+.++..-..+-.++|..+..++.... +++
T Consensus 71 ~N~eLa~~tLEnLvt~snTKikEiA~leqva~kis~~~~~eaK~LlnkIi~nk~YSeistsYaRi~wc~~vidD~nl~i~ 150 (220)
T PF10858_consen 71 NNSELAFNTLENLVTNSNTKIKEIAALEQVAIKISEKKYSEAKQLLNKIIENKEYSEISTSYARINWCCMVIDDQNLNIQ 150 (220)
T ss_pred CcHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHheecccccChh
Confidence 4555566666665543221111111222222234567888888888888766433323334555554444333 344
Q ss_pred HHHHHHHHHhhhCCCchhHHHHHHHH----HHhcCChHHHHHHHHHHHHcCCC
Q 048090 387 LGKLAAQKALELDPHNVGIYVMLSNL----YAKFCMWDEIGQLRELMKEKGLK 435 (447)
Q Consensus 387 ~a~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~m~~~~~~ 435 (447)
.-.++.+.....+.++..+|...-.. -.+.|.-.+|++.++.+..++..
T Consensus 151 dk~kL~kyL~yfdd~~kPFWatAtI~kaiwdik~nm~~~aeknL~~l~~Snn~ 203 (220)
T PF10858_consen 151 DKEKLIKYLNYFDDEKKPFWATATIIKAIWDIKNNMKNQAEKNLKNLLASNNV 203 (220)
T ss_pred hHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhcch
Confidence 44445444444444444444433222 24678888899888888776543
No 493
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=39.98 E-value=3e+02 Score=25.27 Aligned_cols=25 Identities=8% Similarity=-0.237 Sum_probs=13.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC
Q 048090 271 VYGRNGYFKEVIKLYEAMLMNGTKP 295 (447)
Q Consensus 271 ~~~~~g~~~~a~~~~~~m~~~~~~p 295 (447)
.+.+.+++..|.++|+++....+.|
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~ 163 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSA 163 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccCh
Confidence 3445556666666666665554333
No 494
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=39.73 E-value=1e+02 Score=19.75 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=31.1
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 048090 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309 (447)
Q Consensus 259 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 309 (447)
.|....++.++..+++..-.++++..+.+..+.|. .+..+|.--++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 45556667777777777777777777777777764 355555555555444
No 495
>PRK09462 fur ferric uptake regulator; Provisional
Probab=39.67 E-value=1.4e+02 Score=22.93 Aligned_cols=65 Identities=11% Similarity=0.028 Sum_probs=0.0
Q ss_pred cchHHHhhccCCCCCCccHHHHHHHHHhC-CChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCC
Q 048090 36 LGTLTNCLKFLNPRNPLPFNVVISDFCRN-GSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK 100 (447)
Q Consensus 36 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 100 (447)
+..+.+.+..-.-+-+..-..++..+... +..-.|.++++.+.+.+...+..|....|..+.+.|
T Consensus 1 ~~~~~~~l~~~glr~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 1 MTDNNTALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CchHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
No 496
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=39.58 E-value=1.4e+02 Score=21.44 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHhh
Q 048090 372 WGALLSACHDCGKFELGKLAAQKALE 397 (447)
Q Consensus 372 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 397 (447)
|..|+..|...|.+++|.+++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55555555555555555555555544
No 497
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=38.98 E-value=2.3e+02 Score=23.67 Aligned_cols=100 Identities=11% Similarity=-0.008 Sum_probs=47.3
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 048090 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW--TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298 (447)
Q Consensus 221 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 298 (447)
.+...-.+.|+--|.-...+.+|-+.|..-...... ..+..+. ..-|....+.|+.+.|++....+...-+.-|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~--~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPP--SIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCc--cCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 344444555555555555555565555522111000 1122222 334556677888888887777764332222322
Q ss_pred HHHHHHH----HHhccCcHHHHHHHHHH
Q 048090 299 AFVTVIS----ACSHTGQVKLGIEYFEW 322 (447)
Q Consensus 299 ~~~~ll~----~~~~~~~~~~a~~~~~~ 322 (447)
.+..+.. -..+.|..++|++..+.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2222221 12345556666665544
No 498
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=38.88 E-value=1.6e+02 Score=21.91 Aligned_cols=110 Identities=9% Similarity=0.016 Sum_probs=60.3
Q ss_pred CcchHHHhhccCCCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccC-----------Cchh
Q 048090 35 NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSV-----------KDAR 103 (447)
Q Consensus 35 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----------~~~~ 103 (447)
|..-|..++.++...+ -....++.+....-.-.++++..++....-.|. ......+.-|.+. +...
T Consensus 4 Np~IA~~~l~~l~~s~--~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~-efl~~yI~~cI~~ce~~kd~~~q~R~VR 80 (126)
T PF10155_consen 4 NPNIAIEILVKLINSP--NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQ-EFLHMYISNCIKSCESIKDKYMQNRLVR 80 (126)
T ss_pred cHHHHHHHHHHHcCCc--hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcH-HHHHHHHHHHHHHHHhhcccccccchhh
Confidence 3455666665553322 266677777777777778888888776643443 3333333333221 1222
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccC
Q 048090 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147 (447)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 147 (447)
-.-.+++.+++.++......+..+-..|.+..++.+|-.+|+-+
T Consensus 81 lvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 81 LVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred hHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHH
Confidence 33344556666665444445555555556666666666666543
No 499
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=38.79 E-value=81 Score=22.80 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=25.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 048090 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312 (447)
Q Consensus 268 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 312 (447)
++..+...+..-.|.++++.+.+.+..++..|....++.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 344444445555666677777666655566665555555555554
No 500
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=38.72 E-value=1e+02 Score=22.27 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhcC
Q 048090 56 VVISDFCRNGSPLYALKTFSFMHVHG 81 (447)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~m~~~~ 81 (447)
++++.+.++...++|+++.+.|.++|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 45666677777888888888888876
Done!