Query 048090
Match_columns 447
No_of_seqs 597 out of 2107
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 10:25:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 5.2E-40 1.8E-44 317.8 36.9 410 15-441 115-586 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4.5E-37 1.5E-41 297.2 40.4 381 35-431 68-544 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.5E-30 5.2E-35 237.7 42.4 368 35-417 14-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 9E-31 3.1E-35 239.2 40.7 366 57-440 5-374 (388)
5 4g26_A Pentatricopeptide repea 100.0 2.5E-30 8.6E-35 240.2 27.1 187 153-345 27-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 3.2E-31 1.1E-35 246.2 20.1 216 68-310 7-223 (501)
7 2gw1_A Mitochondrial precursor 100.0 1.2E-26 4.1E-31 220.0 34.9 398 17-432 6-478 (514)
8 2y4t_A DNAJ homolog subfamily 100.0 7.7E-26 2.6E-30 210.8 36.9 368 38-421 10-443 (450)
9 2y4t_A DNAJ homolog subfamily 100.0 9.1E-26 3.1E-30 210.3 36.1 352 69-437 10-413 (450)
10 2gw1_A Mitochondrial precursor 100.0 8E-26 2.7E-30 214.3 34.4 381 14-410 36-490 (514)
11 3fp2_A TPR repeat-containing p 99.9 1.8E-24 6E-29 206.3 32.5 392 17-432 25-491 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 1.2E-22 4.1E-27 183.0 35.6 327 52-416 4-353 (359)
13 3fp2_A TPR repeat-containing p 99.9 3.3E-23 1.1E-27 197.4 32.9 372 16-407 58-500 (537)
14 3ieg_A DNAJ homolog subfamily 99.9 4.2E-22 1.4E-26 179.5 33.6 315 85-439 2-340 (359)
15 3hym_B Cell division cycle pro 99.9 7.4E-22 2.5E-26 175.8 31.1 292 118-420 19-322 (330)
16 1fch_A Peroxisomal targeting s 99.9 3.8E-21 1.3E-25 174.0 27.7 286 132-429 36-356 (368)
17 3hym_B Cell division cycle pro 99.9 6.4E-21 2.2E-25 169.7 28.7 277 150-439 20-304 (330)
18 4eqf_A PEX5-related protein; a 99.9 3.9E-21 1.3E-25 173.8 26.6 266 151-428 64-352 (365)
19 2ooe_A Cleavage stimulation fa 99.9 4.1E-19 1.4E-23 168.6 40.1 398 16-432 12-492 (530)
20 2xm6_A Protein corresponding t 99.9 2.1E-18 7E-23 162.1 41.6 365 37-434 24-434 (490)
21 3cv0_A Peroxisome targeting si 99.9 8.7E-20 3E-24 162.1 27.5 267 151-430 20-313 (327)
22 1fch_A Peroxisomal targeting s 99.9 5.7E-20 1.9E-24 166.3 26.4 281 135-432 15-314 (368)
23 1b89_A Protein (clathrin heavy 99.9 1.5E-20 5.3E-25 166.7 20.6 280 35-356 18-305 (449)
24 4eqf_A PEX5-related protein; a 99.9 4.8E-20 1.6E-24 166.6 24.4 236 186-432 64-310 (365)
25 2xm6_A Protein corresponding t 99.9 4.1E-18 1.4E-22 160.1 37.8 368 17-415 39-452 (490)
26 2ooe_A Cleavage stimulation fa 99.9 4.4E-18 1.5E-22 161.5 37.9 374 47-433 9-455 (530)
27 3mkr_A Coatomer subunit epsilo 99.9 1.7E-18 6E-23 150.3 31.8 271 129-424 7-286 (291)
28 4g1t_A Interferon-induced prot 99.8 3E-18 1E-22 160.5 32.5 365 50-438 50-466 (472)
29 3mkr_A Coatomer subunit epsilo 99.8 5.5E-19 1.9E-23 153.5 24.8 251 159-431 6-263 (291)
30 4g1t_A Interferon-induced prot 99.8 3.4E-18 1.1E-22 160.1 28.5 368 17-410 51-471 (472)
31 3cv0_A Peroxisome targeting si 99.8 8E-19 2.7E-23 155.9 21.0 235 152-399 55-316 (327)
32 1b89_A Protein (clathrin heavy 99.8 7.8E-20 2.7E-24 162.2 12.8 282 98-424 15-303 (449)
33 3uq3_A Heat shock protein STI1 99.8 1.8E-17 6.1E-22 141.8 25.7 228 153-399 6-237 (258)
34 3uq3_A Heat shock protein STI1 99.8 2.6E-17 8.7E-22 140.8 25.3 227 187-432 5-236 (258)
35 2pl2_A Hypothetical conserved 99.8 1.5E-17 5.3E-22 138.0 22.4 199 221-430 2-212 (217)
36 1xi4_A Clathrin heavy chain; a 99.8 1E-15 3.4E-20 151.6 34.6 358 16-423 984-1375(1630)
37 3spa_A Mtrpol, DNA-directed RN 99.8 9E-20 3.1E-24 174.6 6.0 156 222-383 125-286 (1134)
38 1xnf_A Lipoprotein NLPI; TPR, 99.8 9E-17 3.1E-21 138.8 21.7 248 164-426 17-269 (275)
39 1xi4_A Clathrin heavy chain; a 99.8 6.4E-15 2.2E-19 146.0 36.3 352 14-416 950-1327(1630)
40 3u4t_A TPR repeat-containing p 99.8 2.8E-16 9.6E-21 135.5 24.2 251 155-414 6-266 (272)
41 2vq2_A PILW, putative fimbrial 99.8 2.9E-16 1E-20 131.1 23.2 201 223-431 7-210 (225)
42 2ho1_A Type 4 fimbrial biogene 99.8 4.1E-16 1.4E-20 132.8 23.9 200 224-431 37-237 (252)
43 2q7f_A YRRB protein; TPR, prot 99.7 2.2E-16 7.7E-21 133.6 21.3 213 188-412 24-236 (243)
44 2h6f_A Protein farnesyltransfe 99.7 3.3E-16 1.1E-20 140.5 23.3 239 189-443 99-357 (382)
45 3u4t_A TPR repeat-containing p 99.7 9E-16 3.1E-20 132.3 25.0 239 188-438 4-254 (272)
46 2ho1_A Type 4 fimbrial biogene 99.7 2.4E-15 8.2E-20 128.1 27.1 211 187-408 37-248 (252)
47 2h6f_A Protein farnesyltransfe 99.7 8.2E-16 2.8E-20 138.0 25.1 250 151-415 96-365 (382)
48 2pl2_A Hypothetical conserved 99.7 3.7E-16 1.3E-20 129.7 21.0 199 185-396 3-212 (217)
49 2q7f_A YRRB protein; TPR, prot 99.7 2.5E-16 8.5E-21 133.4 20.0 202 222-432 21-222 (243)
50 2vq2_A PILW, putative fimbrial 99.7 5.3E-15 1.8E-19 123.4 26.9 213 186-409 7-222 (225)
51 3spa_A Mtrpol, DNA-directed RN 99.7 1.5E-17 5.3E-22 159.4 9.9 122 259-382 124-249 (1134)
52 3e4b_A ALGK; tetratricopeptide 99.7 2E-15 6.7E-20 139.7 22.4 376 23-431 9-420 (452)
53 1ouv_A Conserved hypothetical 99.7 4.7E-14 1.6E-18 121.6 29.7 228 151-403 5-256 (273)
54 3sf4_A G-protein-signaling mod 99.7 3.1E-15 1.1E-19 136.8 23.1 278 153-431 10-335 (406)
55 3e4b_A ALGK; tetratricopeptide 99.7 3.5E-15 1.2E-19 138.1 23.4 344 58-433 10-388 (452)
56 1ouv_A Conserved hypothetical 99.7 9.1E-14 3.1E-18 119.8 30.7 225 186-434 5-253 (273)
57 3vtx_A MAMA; tetratricopeptide 99.7 4E-15 1.4E-19 120.1 20.5 166 261-431 4-169 (184)
58 4abn_A Tetratricopeptide repea 99.7 1.8E-15 6.3E-20 140.8 20.8 213 203-428 84-317 (474)
59 3ro2_A PINS homolog, G-protein 99.7 3.3E-15 1.1E-19 132.8 21.3 278 154-432 7-332 (338)
60 4a1s_A PINS, partner of inscut 99.7 2.3E-15 7.8E-20 138.1 20.2 277 155-432 51-372 (411)
61 1xnf_A Lipoprotein NLPI; TPR, 99.7 9.3E-15 3.2E-19 126.1 21.3 224 198-432 16-244 (275)
62 4e6h_A MRNA 3'-END-processing 99.7 9.2E-13 3.2E-17 126.1 36.5 405 16-433 65-571 (679)
63 3sf4_A G-protein-signaling mod 99.7 5E-15 1.7E-19 135.5 19.6 308 85-420 8-364 (406)
64 3vtx_A MAMA; tetratricopeptide 99.7 2.2E-14 7.4E-19 115.8 20.9 173 223-404 4-176 (184)
65 2ond_A Cleavage stimulation fa 99.6 3.2E-13 1.1E-17 118.5 27.6 216 204-431 33-269 (308)
66 3ulq_A Response regulator aspa 99.6 1.9E-14 6.5E-19 130.7 20.4 238 193-431 109-367 (383)
67 4a1s_A PINS, partner of inscut 99.6 2.9E-14 9.9E-19 130.8 19.7 247 155-401 89-375 (411)
68 3nf1_A KLC 1, kinesin light ch 99.6 7.5E-15 2.6E-19 129.1 14.8 243 189-431 29-306 (311)
69 2ond_A Cleavage stimulation fa 99.6 1.1E-12 3.7E-17 115.2 27.7 225 169-403 33-275 (308)
70 3ro2_A PINS homolog, G-protein 99.6 4.5E-14 1.5E-18 125.4 19.0 285 88-400 7-334 (338)
71 4gyw_A UDP-N-acetylglucosamine 99.6 6.7E-14 2.3E-18 135.5 20.8 168 258-431 5-173 (723)
72 3ulq_A Response regulator aspa 99.6 2.2E-13 7.4E-18 123.7 21.9 239 158-399 109-369 (383)
73 3as5_A MAMA; tetratricopeptide 99.6 2.2E-13 7.4E-18 109.7 18.9 166 262-432 8-173 (186)
74 1hz4_A MALT regulatory protein 99.6 5.7E-12 2E-16 113.8 29.9 88 343-430 225-320 (373)
75 3nf1_A KLC 1, kinesin light ch 99.6 2.4E-14 8.4E-19 125.8 14.0 249 151-401 26-310 (311)
76 4abn_A Tetratricopeptide repea 99.6 3.6E-13 1.2E-17 125.4 22.1 214 167-395 83-318 (474)
77 4i17_A Hypothetical protein; T 99.6 7.4E-13 2.5E-17 110.7 21.2 206 187-411 7-222 (228)
78 3q15_A PSP28, response regulat 99.6 5.7E-13 2E-17 120.6 21.9 236 195-431 109-364 (378)
79 4i17_A Hypothetical protein; T 99.6 5.1E-13 1.7E-17 111.7 19.5 199 221-438 4-213 (228)
80 4e6h_A MRNA 3'-END-processing 99.5 2.5E-11 8.5E-16 116.3 31.2 382 17-404 100-576 (679)
81 3as5_A MAMA; tetratricopeptide 99.5 1.5E-12 5.1E-17 104.8 19.3 172 224-404 8-179 (186)
82 3q15_A PSP28, response regulat 99.5 1.9E-11 6.4E-16 110.6 27.2 238 157-398 106-365 (378)
83 4gyw_A UDP-N-acetylglucosamine 99.5 1.2E-12 4.1E-17 126.8 20.2 168 223-400 8-176 (723)
84 3edt_B KLC 2, kinesin light ch 99.5 1.4E-12 4.6E-17 112.8 15.1 234 198-431 12-280 (283)
85 1hz4_A MALT regulatory protein 99.4 1.4E-10 4.7E-15 104.7 26.6 205 155-361 96-321 (373)
86 3qky_A Outer membrane assembly 99.4 3.2E-11 1.1E-15 103.0 20.5 189 223-420 14-249 (261)
87 1qqe_A Vesicular transport pro 99.4 2.7E-11 9.2E-16 105.2 19.6 177 226-404 79-275 (292)
88 4ga2_A E3 SUMO-protein ligase 99.4 3.1E-12 1.1E-16 99.0 12.0 143 269-418 4-149 (150)
89 2yhc_A BAMD, UPF0169 lipoprote 99.4 1.4E-10 4.7E-15 96.5 22.0 191 223-434 3-215 (225)
90 3qky_A Outer membrane assembly 99.4 3.9E-11 1.3E-15 102.4 19.1 171 259-432 12-224 (261)
91 3edt_B KLC 2, kinesin light ch 99.4 1.5E-11 5.2E-16 106.1 16.3 210 187-398 43-281 (283)
92 2fo7_A Synthetic consensus TPR 99.4 6E-11 2E-15 89.7 17.4 130 299-432 3-132 (136)
93 1qqe_A Vesicular transport pro 99.4 3.4E-11 1.2E-15 104.6 17.9 212 202-430 32-267 (292)
94 2pzi_A Probable serine/threoni 99.4 9.9E-12 3.4E-16 120.9 15.8 177 235-418 402-583 (681)
95 3mv2_B Coatomer subunit epsilo 99.3 4.5E-10 1.5E-14 95.7 23.0 249 131-406 23-290 (310)
96 3mv2_B Coatomer subunit epsilo 99.3 6.3E-10 2.1E-14 94.8 23.5 242 160-432 21-282 (310)
97 4ga2_A E3 SUMO-protein ligase 99.3 1.1E-11 3.7E-16 95.9 10.4 129 303-438 3-133 (150)
98 3qou_A Protein YBBN; thioredox 99.3 1.4E-10 4.7E-15 100.4 17.9 167 259-431 114-283 (287)
99 3dra_A Protein farnesyltransfe 99.3 3.4E-09 1.2E-13 91.3 25.9 226 204-442 50-296 (306)
100 2fo7_A Synthetic consensus TPR 99.3 3.2E-10 1.1E-14 85.5 17.0 133 264-401 3-135 (136)
101 2r5s_A Uncharacterized protein 99.3 4.3E-11 1.5E-15 95.4 12.4 160 266-431 10-172 (176)
102 3gyz_A Chaperone protein IPGC; 99.3 7.3E-11 2.5E-15 90.7 12.2 103 329-433 31-134 (151)
103 4gco_A Protein STI-1; structur 99.3 9.6E-11 3.3E-15 87.4 12.4 110 298-411 14-123 (126)
104 2vsy_A XCC0866; transferase, g 99.3 1.7E-10 6E-15 110.2 17.3 165 237-410 2-169 (568)
105 2pzi_A Probable serine/threoni 99.2 1.1E-09 3.9E-14 106.5 21.4 173 198-384 402-583 (681)
106 3dra_A Protein farnesyltransfe 99.2 3.9E-08 1.3E-12 84.7 27.8 238 163-411 44-301 (306)
107 4gco_A Protein STI-1; structur 99.2 6.1E-10 2.1E-14 83.0 14.4 106 329-438 8-114 (126)
108 2vsy_A XCC0866; transferase, g 99.2 6.1E-10 2.1E-14 106.4 18.1 165 200-376 2-169 (568)
109 2yhc_A BAMD, UPF0169 lipoprote 99.2 2.2E-09 7.6E-14 89.2 19.3 208 153-403 5-218 (225)
110 3qou_A Protein YBBN; thioredox 99.2 1.6E-09 5.4E-14 93.7 18.8 168 220-397 113-283 (287)
111 3rjv_A Putative SEL1 repeat pr 99.2 3.7E-09 1.3E-13 86.8 20.2 176 242-434 4-199 (212)
112 3urz_A Uncharacterized protein 99.2 9.7E-10 3.3E-14 90.1 16.5 167 224-401 4-189 (208)
113 2r5s_A Uncharacterized protein 99.2 9.8E-10 3.4E-14 87.5 16.0 163 226-397 8-172 (176)
114 2uy1_A Cleavage stimulation fa 99.2 3.2E-08 1.1E-12 92.0 28.3 368 18-431 16-412 (493)
115 2ifu_A Gamma-SNAP; membrane fu 99.2 3.2E-09 1.1E-13 92.8 19.5 230 164-424 3-253 (307)
116 2vgx_A Chaperone SYCD; alterna 99.2 2.2E-10 7.7E-15 88.1 10.5 101 299-403 23-123 (148)
117 1hh8_A P67PHOX, NCF-2, neutrop 99.2 1.5E-09 5.1E-14 89.4 16.1 134 262-403 6-155 (213)
118 2uy1_A Cleavage stimulation fa 99.1 5E-08 1.7E-12 90.7 27.3 326 65-429 28-380 (493)
119 1a17_A Serine/threonine protei 99.1 2.4E-09 8.3E-14 84.1 16.0 130 298-431 14-145 (166)
120 3urz_A Uncharacterized protein 99.1 3.8E-09 1.3E-13 86.5 17.5 126 230-363 60-187 (208)
121 3rjv_A Putative SEL1 repeat pr 99.1 2.8E-08 9.7E-13 81.5 21.7 176 205-401 4-200 (212)
122 2ifu_A Gamma-SNAP; membrane fu 99.1 8.5E-09 2.9E-13 90.1 19.1 231 133-390 3-253 (307)
123 1p5q_A FKBP52, FK506-binding p 99.1 1.8E-09 6.2E-14 95.6 14.9 97 333-431 196-293 (336)
124 2qfc_A PLCR protein; TPR, HTH, 99.1 1.6E-08 5.3E-13 87.8 20.6 166 263-430 76-264 (293)
125 3u3w_A Transcriptional activat 99.1 9.9E-09 3.4E-13 89.1 19.1 166 266-431 79-265 (293)
126 2vyi_A SGTA protein; chaperone 99.1 4.6E-09 1.6E-13 78.6 14.6 120 296-419 11-130 (131)
127 1na0_A Designed protein CTPR3; 99.1 6.7E-09 2.3E-13 77.0 15.0 117 297-417 9-125 (125)
128 2e2e_A Formate-dependent nitri 99.1 1.5E-09 5E-14 86.5 12.0 127 273-404 21-150 (177)
129 2xcb_A PCRH, regulatory protei 99.1 2.8E-09 9.5E-14 81.4 12.6 101 300-404 21-121 (142)
130 2lni_A Stress-induced-phosphop 99.1 4.3E-09 1.5E-13 79.1 13.6 118 296-417 15-132 (133)
131 3upv_A Heat shock protein STI1 99.0 3.5E-09 1.2E-13 79.0 12.4 109 299-411 6-120 (126)
132 1hh8_A P67PHOX, NCF-2, neutrop 99.0 2.7E-08 9.2E-13 81.7 18.7 133 224-368 6-154 (213)
133 2c2l_A CHIP, carboxy terminus 99.0 3E-09 1E-13 91.6 13.3 195 223-432 3-199 (281)
134 3gyz_A Chaperone protein IPGC; 99.0 9.9E-09 3.4E-13 78.8 14.6 106 293-403 31-138 (151)
135 1hxi_A PEX5, peroxisome target 99.0 2.5E-09 8.5E-14 79.0 10.7 95 335-431 19-113 (121)
136 2fbn_A 70 kDa peptidylprolyl i 99.0 3.9E-10 1.3E-14 91.8 6.9 99 334-434 89-188 (198)
137 4f3v_A ESX-1 secretion system 99.0 1.4E-08 4.9E-13 85.3 15.7 205 199-411 18-249 (282)
138 3sz7_A HSC70 cochaperone (SGT) 99.0 3.7E-09 1.3E-13 83.0 11.5 111 296-410 10-120 (164)
139 4gcn_A Protein STI-1; structur 99.0 2.6E-09 8.9E-14 79.7 10.1 98 334-433 9-113 (127)
140 3q7a_A Farnesyltransferase alp 99.0 2.4E-07 8.3E-12 80.6 23.6 226 204-442 71-340 (349)
141 2vgx_A Chaperone SYCD; alterna 99.0 2.2E-09 7.6E-14 82.5 9.9 108 320-432 10-118 (148)
142 3q49_B STIP1 homology and U bo 99.0 1.2E-08 4E-13 77.3 13.5 97 333-431 9-105 (137)
143 2kck_A TPR repeat; tetratricop 99.0 6.7E-09 2.3E-13 75.3 11.6 100 332-433 5-107 (112)
144 3upv_A Heat shock protein STI1 99.0 2.1E-08 7.2E-13 74.7 14.2 98 333-432 4-101 (126)
145 2qfc_A PLCR protein; TPR, HTH, 99.0 2.9E-07 9.8E-12 79.8 22.8 173 224-398 75-266 (293)
146 1elw_A TPR1-domain of HOP; HOP 98.9 4E-08 1.4E-12 71.8 14.8 111 298-412 5-115 (118)
147 1elw_A TPR1-domain of HOP; HOP 98.9 1E-08 3.5E-13 75.1 11.4 102 333-438 4-105 (118)
148 3u3w_A Transcriptional activat 98.9 1.1E-07 3.9E-12 82.4 19.6 168 229-398 80-266 (293)
149 2xcb_A PCRH, regulatory protei 98.9 1.6E-08 5.5E-13 77.1 12.3 102 329-432 13-115 (142)
150 4f3v_A ESX-1 secretion system 98.9 5.6E-08 1.9E-12 81.7 16.4 186 236-432 18-237 (282)
151 2lni_A Stress-induced-phosphop 98.9 2.1E-08 7.1E-13 75.3 12.8 99 332-432 15-113 (133)
152 2dba_A Smooth muscle cell asso 98.9 5.5E-08 1.9E-12 74.5 15.1 113 296-413 27-143 (148)
153 2e2e_A Formate-dependent nitri 98.9 1.6E-08 5.4E-13 80.5 12.3 122 307-432 20-144 (177)
154 1na0_A Designed protein CTPR3; 98.9 3.2E-08 1.1E-12 73.2 13.1 98 333-432 9-106 (125)
155 3sz7_A HSC70 cochaperone (SGT) 98.9 3.7E-08 1.3E-12 77.2 13.7 99 261-363 10-109 (164)
156 3gw4_A Uncharacterized protein 98.9 4.8E-08 1.6E-12 79.5 13.7 134 298-431 27-175 (203)
157 2vyi_A SGTA protein; chaperone 98.9 2.6E-08 8.9E-13 74.4 11.1 99 332-432 11-109 (131)
158 3q49_B STIP1 homology and U bo 98.8 5.8E-08 2E-12 73.4 12.7 115 295-413 7-126 (137)
159 2c2l_A CHIP, carboxy terminus 98.8 2.6E-08 9E-13 85.7 11.8 194 186-397 3-198 (281)
160 1a17_A Serine/threonine protei 98.8 1.9E-07 6.3E-12 73.1 15.9 131 262-397 13-145 (166)
161 3dss_A Geranylgeranyl transfer 98.8 1.5E-06 5.1E-11 75.3 22.7 182 241-431 91-303 (331)
162 1p5q_A FKBP52, FK506-binding p 98.8 1.3E-08 4.4E-13 90.1 9.8 133 261-397 146-293 (336)
163 3q7a_A Farnesyltransferase alp 98.8 4.5E-06 1.6E-10 72.6 25.3 246 156-412 58-346 (349)
164 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 5.4E-08 1.9E-12 89.9 14.1 97 333-431 317-414 (457)
165 2xev_A YBGF; tetratricopeptide 98.8 8.1E-08 2.8E-12 71.7 12.6 104 302-410 7-117 (129)
166 2dba_A Smooth muscle cell asso 98.8 5.6E-08 1.9E-12 74.5 11.9 99 332-432 27-128 (148)
167 2hr2_A Hypothetical protein; a 98.8 7.4E-08 2.5E-12 73.1 11.9 92 338-431 16-130 (159)
168 1elr_A TPR2A-domain of HOP; HO 98.8 4.3E-08 1.5E-12 73.2 10.4 111 298-413 5-122 (131)
169 3rkv_A Putative peptidylprolyl 98.8 4.6E-08 1.6E-12 76.5 10.9 115 297-413 11-142 (162)
170 2xev_A YBGF; tetratricopeptide 98.8 3E-07 1E-11 68.5 14.6 95 336-432 5-105 (129)
171 1hxi_A PEX5, peroxisome target 98.8 7.9E-08 2.7E-12 70.8 10.7 99 300-403 20-119 (121)
172 3k9i_A BH0479 protein; putativ 98.8 1.4E-08 4.8E-13 74.5 6.4 94 310-406 3-98 (117)
173 3gw4_A Uncharacterized protein 98.8 3.1E-07 1.1E-11 74.5 15.2 99 152-250 26-133 (203)
174 3dss_A Geranylgeranyl transfer 98.8 2.4E-05 8.2E-10 67.8 27.5 198 203-413 90-319 (331)
175 1wao_1 Serine/threonine protei 98.7 4E-08 1.4E-12 91.2 10.7 120 303-427 12-134 (477)
176 2kck_A TPR repeat; tetratricop 98.7 1.7E-07 5.9E-12 67.6 12.0 103 297-403 6-111 (112)
177 3rkv_A Putative peptidylprolyl 98.7 1E-07 3.5E-12 74.4 11.1 103 262-369 11-131 (162)
178 1ihg_A Cyclophilin 40; ppiase 98.7 1.6E-07 5.4E-12 84.0 13.4 92 332-425 272-363 (370)
179 2fbn_A 70 kDa peptidylprolyl i 98.7 5.7E-08 1.9E-12 78.8 9.6 157 233-397 13-185 (198)
180 1elr_A TPR2A-domain of HOP; HO 98.7 1.7E-07 5.9E-12 69.8 11.6 96 335-432 6-108 (131)
181 2if4_A ATFKBP42; FKBP-like, al 98.7 5.2E-08 1.8E-12 86.2 9.9 149 262-432 179-328 (338)
182 3k9i_A BH0479 protein; putativ 98.7 3.8E-08 1.3E-12 72.1 7.5 88 345-432 2-90 (117)
183 4gcn_A Protein STI-1; structur 98.7 4E-07 1.4E-11 67.7 12.2 99 298-401 9-115 (127)
184 1zu2_A Mitochondrial import re 98.7 3.3E-08 1.1E-12 74.8 6.0 89 309-402 14-124 (158)
185 1dce_A Protein (RAB geranylger 98.6 2.3E-06 7.9E-11 80.9 19.5 174 239-421 44-244 (567)
186 2hr2_A Hypothetical protein; a 98.6 1.3E-07 4.3E-12 71.8 8.8 104 302-410 16-143 (159)
187 2l6j_A TPR repeat-containing p 98.6 2.4E-08 8.2E-13 72.3 4.0 94 332-427 3-102 (111)
188 3ro3_A PINS homolog, G-protein 98.6 5.1E-07 1.8E-11 70.0 11.6 133 299-431 11-157 (164)
189 4b4t_Q 26S proteasome regulato 98.6 3.3E-06 1.1E-10 77.5 18.7 167 265-431 58-244 (434)
190 2kat_A Uncharacterized protein 98.5 4E-07 1.4E-11 66.3 9.2 82 315-401 3-85 (115)
191 1na3_A Designed protein CTPR2; 98.5 7.8E-07 2.7E-11 61.4 10.2 83 333-417 9-91 (91)
192 4b4t_Q 26S proteasome regulato 98.5 3.1E-06 1.1E-10 77.7 16.7 171 227-397 58-244 (434)
193 1wao_1 Serine/threonine protei 98.5 1.4E-06 4.9E-11 80.7 13.4 116 272-393 16-134 (477)
194 1dce_A Protein (RAB geranylger 98.5 4.6E-06 1.6E-10 78.9 16.3 163 276-445 43-232 (567)
195 2if4_A ATFKBP42; FKBP-like, al 98.5 6.9E-07 2.3E-11 79.0 10.0 155 223-403 178-333 (338)
196 3ro3_A PINS homolog, G-protein 98.5 1.8E-06 6.2E-11 66.9 11.5 136 264-399 11-159 (164)
197 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 1.1E-06 3.7E-11 81.2 11.4 103 333-439 268-385 (457)
198 3ma5_A Tetratricopeptide repea 98.4 1.2E-06 4E-11 62.0 8.8 66 332-399 6-71 (100)
199 1ihg_A Cyclophilin 40; ppiase 98.4 1.7E-06 5.7E-11 77.4 11.2 96 337-432 227-336 (370)
200 1zu2_A Mitochondrial import re 98.4 1E-06 3.6E-11 66.7 8.1 96 343-442 12-128 (158)
201 2kat_A Uncharacterized protein 98.3 4.2E-06 1.5E-10 60.7 9.1 79 351-431 3-81 (115)
202 1klx_A Cysteine rich protein B 98.3 2.9E-05 9.9E-10 58.4 13.3 110 312-433 10-127 (138)
203 3n71_A Histone lysine methyltr 98.2 1.2E-05 4.1E-10 74.2 13.0 127 306-432 318-464 (490)
204 3bee_A Putative YFRE protein; 98.2 1.3E-05 4.3E-10 55.3 9.8 68 366-433 3-73 (93)
205 3ma5_A Tetratricopeptide repea 98.2 6.8E-06 2.3E-10 57.9 8.1 66 366-431 4-69 (100)
206 2kc7_A BFR218_protein; tetratr 98.2 3.4E-06 1.1E-10 59.3 6.4 82 339-430 6-88 (99)
207 2l6j_A TPR repeat-containing p 98.1 6.7E-06 2.3E-10 59.1 6.4 94 296-393 3-102 (111)
208 1klx_A Cysteine rich protein B 98.0 0.00015 5.2E-09 54.4 13.5 112 276-400 9-128 (138)
209 3n71_A Histone lysine methyltr 98.0 2.7E-05 9.3E-10 71.8 10.8 128 162-289 319-462 (490)
210 1na3_A Designed protein CTPR2; 98.0 3.5E-05 1.2E-09 52.8 8.2 66 367-432 7-72 (91)
211 3ly7_A Transcriptional activat 97.8 0.00024 8.4E-09 61.8 12.0 141 258-403 190-344 (372)
212 3ly7_A Transcriptional activat 97.8 0.0025 8.7E-08 55.5 17.8 65 366-431 274-338 (372)
213 3bee_A Putative YFRE protein; 97.8 0.00027 9.2E-09 48.6 9.5 70 330-401 3-75 (93)
214 1pc2_A Mitochondria fission pr 97.7 0.00017 5.9E-09 53.9 8.8 96 310-408 11-110 (152)
215 3qww_A SET and MYND domain-con 97.6 0.0001 3.4E-09 66.9 7.5 86 346-431 311-410 (433)
216 3qwp_A SET and MYND domain-con 97.6 0.00025 8.5E-09 64.4 9.6 63 335-397 331-399 (429)
217 2kc7_A BFR218_protein; tetratr 97.6 0.00019 6.6E-09 50.0 7.1 59 374-432 5-64 (99)
218 2v5f_A Prolyl 4-hydroxylase su 97.6 0.00056 1.9E-08 48.2 9.4 79 332-410 4-87 (104)
219 1pc2_A Mitochondria fission pr 97.5 0.00074 2.5E-08 50.5 9.6 88 278-370 14-106 (152)
220 3u64_A Protein TP_0956; tetrat 97.5 0.00059 2E-08 56.9 9.9 84 350-435 180-272 (301)
221 3qwp_A SET and MYND domain-con 97.3 0.0038 1.3E-07 56.6 13.2 92 340-431 294-399 (429)
222 3mkq_A Coatomer beta'-subunit; 97.3 0.032 1.1E-06 55.5 20.9 153 59-248 607-760 (814)
223 3qww_A SET and MYND domain-con 97.2 0.0012 4.1E-08 59.8 9.3 89 200-288 311-408 (433)
224 3lvg_A Clathrin heavy chain 1; 97.2 1.8E-06 6.2E-11 76.5 -8.8 352 35-422 40-429 (624)
225 4h7y_A Dual specificity protei 97.2 0.0052 1.8E-07 45.2 10.5 113 296-412 12-137 (161)
226 1wy6_A Hypothetical protein ST 97.1 0.039 1.3E-06 39.7 14.9 141 272-435 17-157 (172)
227 4h7y_A Dual specificity protei 97.1 0.0087 3E-07 44.1 10.8 103 258-363 9-124 (161)
228 1qsa_A Protein (soluble lytic 97.1 0.21 7E-06 47.4 27.4 255 123-397 74-347 (618)
229 1nzn_A CGI-135 protein, fissio 97.0 0.0055 1.9E-07 44.0 8.8 103 303-408 7-113 (126)
230 1nzn_A CGI-135 protein, fissio 97.0 0.0095 3.2E-07 42.8 10.0 82 279-363 18-104 (126)
231 3lvg_A Clathrin heavy chain 1; 97.0 0.0084 2.9E-07 53.7 11.4 341 15-390 114-533 (624)
232 2v5f_A Prolyl 4-hydroxylase su 96.9 0.011 3.9E-07 41.3 9.8 77 296-374 4-85 (104)
233 3u64_A Protein TP_0956; tetrat 96.9 0.0059 2E-07 51.0 9.3 109 312-431 178-297 (301)
234 3mkq_A Coatomer beta'-subunit; 96.7 0.079 2.7E-06 52.6 18.4 99 162-289 609-708 (814)
235 3mkq_B Coatomer subunit alpha; 96.4 0.18 6.1E-06 38.7 13.9 103 128-249 12-114 (177)
236 4ady_A RPN2, 26S proteasome re 96.3 1 3.5E-05 44.6 25.5 258 161-430 383-656 (963)
237 3mkq_B Coatomer subunit alpha; 96.0 0.37 1.3E-05 37.0 16.3 128 271-429 14-141 (177)
238 2ff4_A Probable regulatory pro 95.9 0.11 3.6E-06 46.5 12.3 69 372-440 174-247 (388)
239 4gns_B Protein CSD3, chitin bi 95.9 0.29 9.7E-06 47.4 15.8 54 376-429 344-397 (754)
240 3o48_A Mitochondria fission 1 95.5 0.22 7.5E-06 35.9 10.2 75 330-406 37-115 (134)
241 4b4t_P 26S proteasome regulato 95.3 1.2 4E-05 40.5 17.2 195 165-362 29-247 (445)
242 4gns_B Protein CSD3, chitin bi 95.2 0.18 6.2E-06 48.7 11.7 52 342-395 346-397 (754)
243 3ffl_A Anaphase-promoting comp 95.1 0.078 2.7E-06 40.0 7.2 28 402-429 121-148 (167)
244 1y8m_A FIS1; mitochondria, unk 95.1 0.66 2.2E-05 34.0 12.1 75 330-406 36-114 (144)
245 4b4t_P 26S proteasome regulato 94.9 2.2 7.5E-05 38.8 18.7 188 134-326 29-247 (445)
246 4ady_A RPN2, 26S proteasome re 94.8 3.5 0.00012 40.9 23.3 125 231-362 497-623 (963)
247 1y8m_A FIS1; mitochondria, unk 94.7 0.76 2.6E-05 33.6 11.1 69 367-437 37-109 (144)
248 3o48_A Mitochondria fission 1 93.7 0.41 1.4E-05 34.5 7.9 68 368-437 39-110 (134)
249 1wy6_A Hypothetical protein ST 93.5 1.5 5.3E-05 31.7 17.6 64 299-364 93-156 (172)
250 4fhn_B Nucleoporin NUP120; pro 93.3 3.3 0.00011 42.9 17.1 175 221-398 839-1050(1139)
251 3ffl_A Anaphase-promoting comp 93.2 0.53 1.8E-05 35.5 8.2 134 265-413 23-165 (167)
252 2ff4_A Probable regulatory pro 93.1 1.7 5.9E-05 38.6 13.0 55 303-359 177-231 (388)
253 1zbp_A Hypothetical protein VP 91.9 0.76 2.6E-05 37.8 8.2 117 305-432 5-129 (273)
254 1v54_E Cytochrome C oxidase po 91.1 2.5 8.6E-05 28.7 9.3 63 167-232 25-87 (109)
255 4fhn_B Nucleoporin NUP120; pro 91.0 11 0.00036 39.1 17.7 133 225-360 900-1048(1139)
256 2uwj_G Type III export protein 90.8 2.6 8.9E-05 28.4 10.0 89 99-192 19-107 (115)
257 4b4t_R RPN7, 26S proteasome re 90.8 2.6 9E-05 38.0 11.6 103 189-291 133-237 (429)
258 1v54_E Cytochrome C oxidase po 90.7 2.8 9.4E-05 28.5 9.4 63 277-341 25-87 (109)
259 2p58_C Putative type III secre 90.6 2.8 9.5E-05 28.3 10.5 89 99-192 20-108 (116)
260 1wdy_A 2-5A-dependent ribonucl 89.6 6.1 0.00021 32.8 12.5 93 343-440 189-283 (285)
261 1qsa_A Protein (soluble lytic 89.1 16 0.00054 34.7 34.6 382 21-439 76-486 (618)
262 3ltm_A Alpha-REP4; protein eng 88.9 7.3 0.00025 30.7 17.8 165 39-216 21-185 (211)
263 2y69_E Cytochrome C oxidase su 88.3 5.7 0.00019 28.7 9.3 63 167-232 68-130 (152)
264 2y69_E Cytochrome C oxidase su 88.1 5.9 0.0002 28.6 9.5 63 277-341 68-130 (152)
265 2wpv_A GET4, UPF0363 protein Y 87.9 12 0.0004 31.9 21.6 170 124-326 36-217 (312)
266 3esl_A Checkpoint serine/threo 87.5 4 0.00014 31.9 8.7 53 347-399 93-145 (202)
267 1zbp_A Hypothetical protein VP 87.0 6.2 0.00021 32.5 10.0 52 272-324 7-58 (273)
268 3esl_A Checkpoint serine/threo 84.6 6.4 0.00022 30.8 8.6 55 383-437 93-149 (202)
269 4b4t_R RPN7, 26S proteasome re 83.9 14 0.00048 33.2 12.0 101 225-326 132-237 (429)
270 3ltj_A Alpharep-4; protein eng 83.7 14 0.00047 28.8 17.4 162 41-215 18-179 (201)
271 4a1g_A Mitotic checkpoint seri 83.0 7.5 0.00026 28.9 8.0 50 350-399 82-131 (152)
272 1n11_A Ankyrin; clathrin, BAND 82.7 26 0.0009 31.3 13.6 203 22-248 16-233 (437)
273 3txn_A 26S proteasome regulato 81.4 28 0.00097 30.8 24.4 295 122-434 20-345 (394)
274 1wdy_A 2-5A-dependent ribonucl 81.1 22 0.00074 29.3 11.9 113 24-148 9-129 (285)
275 2uwj_G Type III export protein 79.7 12 0.0004 25.4 9.2 89 200-302 19-107 (115)
276 2p58_C Putative type III secre 79.1 12 0.00042 25.3 9.8 89 200-302 20-108 (116)
277 4aez_C MAD3, mitotic spindle c 78.3 13 0.00043 29.7 8.3 50 350-399 131-180 (223)
278 1ug3_A EIF4GI, eukaryotic prot 77.2 29 0.00098 30.0 11.2 25 126-150 16-40 (339)
279 3txn_A 26S proteasome regulato 76.8 40 0.0014 29.8 27.9 299 86-399 19-344 (394)
280 3lpz_A GET4 (YOR164C homolog); 75.7 38 0.0013 29.1 22.4 162 54-251 38-214 (336)
281 3eiq_C Programmed cell death p 74.9 42 0.0014 29.2 12.3 69 227-299 220-290 (358)
282 2wvi_A Mitotic checkpoint seri 74.7 25 0.00085 26.5 9.6 50 350-399 77-126 (164)
283 2nsz_A Programmed cell death p 71.3 26 0.00088 25.2 8.0 61 125-185 11-76 (129)
284 4aez_C MAD3, mitotic spindle c 69.9 40 0.0014 26.9 9.3 52 385-436 130-183 (223)
285 2d2s_A Exocyst complex compone 68.6 20 0.00068 29.0 7.6 23 57-79 24-46 (235)
286 1n11_A Ankyrin; clathrin, BAND 67.9 48 0.0016 29.6 11.1 339 58-440 18-374 (437)
287 2ion_A PDCD4, programmed cell 66.6 33 0.0011 25.5 7.9 67 227-297 12-80 (152)
288 2wvi_A Mitotic checkpoint seri 66.5 39 0.0013 25.4 9.6 52 386-437 77-130 (164)
289 2ion_A PDCD4, programmed cell 65.5 22 0.00074 26.5 6.7 62 124-185 12-78 (152)
290 3jxi_A Vanilloid receptor-rela 64.9 38 0.0013 27.4 9.1 89 59-148 10-117 (260)
291 2wpv_A GET4, UPF0363 protein Y 64.5 66 0.0022 27.3 22.1 168 226-431 35-216 (312)
292 3ygs_P Procaspase 9; apoptosis 64.1 11 0.00039 25.4 4.5 33 36-68 53-85 (97)
293 2nsz_A Programmed cell death p 63.7 38 0.0013 24.3 9.2 67 227-297 10-78 (129)
294 4a1g_A Mitotic checkpoint seri 63.1 44 0.0015 24.8 10.0 52 386-437 82-135 (152)
295 3ltj_A Alpharep-4; protein eng 62.5 51 0.0017 25.4 18.5 48 120-167 27-74 (201)
296 2r9g_A AAA ATPase, central reg 61.5 56 0.0019 25.5 10.0 60 156-216 15-82 (204)
297 1k1a_A B-cell lymphoma 3-encod 61.3 59 0.002 25.7 10.2 85 59-147 14-102 (241)
298 3ltm_A Alpha-REP4; protein eng 58.2 63 0.0022 25.1 18.2 42 126-167 38-79 (211)
299 1ya0_A SMG-7 transcript varian 57.3 73 0.0025 29.2 10.0 70 308-382 163-233 (497)
300 2zu6_B Programmed cell death p 56.5 91 0.0031 26.4 10.6 23 228-250 7-29 (307)
301 3bge_A Predicted ATPase; struc 54.7 73 0.0025 24.8 8.0 45 157-201 9-56 (201)
302 2etb_A Transient receptor pote 54.4 76 0.0026 25.5 9.1 88 58-147 6-113 (256)
303 3hra_A Ankyrin repeat family p 52.9 74 0.0025 24.2 9.0 14 133-146 14-27 (201)
304 2fe3_A Peroxide operon regulat 52.2 35 0.0012 25.0 5.9 60 77-137 13-72 (145)
305 4gq2_M Nucleoporin NUP120; bet 51.8 89 0.0031 31.6 10.5 52 303-360 816-867 (950)
306 3ctd_A Putative ATPase, AAA fa 50.2 91 0.0031 24.5 9.2 64 153-216 33-104 (213)
307 4b4t_S RPN3, 26S proteasome re 49.3 40 0.0014 31.0 6.8 63 297-363 231-300 (523)
308 4ets_A Ferric uptake regulatio 49.2 26 0.00088 26.4 4.8 70 68-138 14-86 (162)
309 3bu8_A Telomeric repeat-bindin 49.1 67 0.0023 25.3 6.9 51 313-363 88-144 (235)
310 2xig_A Ferric uptake regulatio 47.2 33 0.0011 25.4 5.0 61 76-137 17-77 (150)
311 3lpz_A GET4 (YOR164C homolog); 47.1 1.4E+02 0.0047 25.7 27.0 170 123-325 37-215 (336)
312 2d2s_A Exocyst complex compone 47.0 1.1E+02 0.0038 24.6 9.6 90 231-323 25-117 (235)
313 2o03_A Probable zinc uptake re 47.0 39 0.0013 24.2 5.4 44 57-100 16-59 (131)
314 1naf_A ADP-ribosylation factor 47.0 6.5 0.00022 29.4 1.1 31 18-48 16-46 (158)
315 3eyy_A Putative iron uptake re 46.8 39 0.0013 24.8 5.4 35 102-136 33-67 (145)
316 3hra_A Ankyrin repeat family p 46.8 73 0.0025 24.3 7.5 14 163-176 114-127 (201)
317 3i5p_A Nucleoporin NUP170; hel 46.5 1.5E+02 0.0053 27.3 10.2 69 366-434 175-248 (525)
318 2zu6_B Programmed cell death p 45.1 1.4E+02 0.0048 25.2 12.5 66 265-332 169-236 (307)
319 3mwm_A ZUR, putative metal upt 44.1 35 0.0012 24.8 4.7 44 93-136 20-63 (139)
320 1oyz_A Hypothetical protein YI 44.0 1.3E+02 0.0045 24.6 18.9 225 42-291 28-263 (280)
321 3ljn_A Hypothetical protein; a 43.8 1.3E+02 0.0043 25.9 9.3 16 233-248 179-194 (364)
322 1ya0_A SMG-7 transcript varian 42.5 81 0.0028 28.9 7.8 78 336-415 155-232 (497)
323 2w57_A Ferric uptake regulatio 42.3 47 0.0016 24.5 5.3 63 75-138 6-69 (150)
324 2pnn_A Transient receptor pote 41.4 1.4E+02 0.0048 24.2 10.0 92 54-147 14-124 (273)
325 3eu9_A Huntingtin-interacting 41.1 58 0.002 25.7 6.3 17 378-394 183-199 (240)
326 2ijq_A Hypothetical protein; s 40.9 73 0.0025 23.9 5.9 53 62-114 43-103 (161)
327 3qye_A TBC1 domain family memb 40.4 1.7E+02 0.0059 24.9 10.7 128 66-200 164-307 (331)
328 1wgl_A TOLL-interacting protei 40.0 35 0.0012 20.5 3.3 47 390-438 11-58 (59)
329 3b7b_A Euchromatic histone-lys 39.5 1.1E+02 0.0037 24.1 7.7 20 128-147 81-100 (237)
330 1mzb_A Ferric uptake regulatio 38.2 65 0.0022 23.2 5.4 61 77-138 9-70 (136)
331 2qfz_A TBC1 domain family memb 37.9 1.3E+02 0.0044 25.9 8.2 74 107-180 230-314 (345)
332 3kea_A K1L; tropism, ANK repea 37.3 90 0.0031 25.8 7.0 164 36-212 12-183 (285)
333 2crb_A Nuclear receptor bindin 36.7 66 0.0023 21.3 4.4 23 373-395 19-41 (97)
334 3b7b_A Euchromatic histone-lys 35.9 1.6E+02 0.0054 23.1 8.7 14 162-175 84-97 (237)
335 4b4t_S RPN3, 26S proteasome re 35.4 1.3E+02 0.0045 27.7 7.8 25 335-359 233-257 (523)
336 3aji_A 26S proteasome non-ATPa 35.3 1.6E+02 0.0054 22.9 8.4 14 163-176 14-27 (231)
337 1oxz_A ADP-ribosylation factor 35.1 10 0.00036 29.2 0.6 25 55-79 35-62 (186)
338 1te4_A Conserved protein MTH18 35.0 1.2E+02 0.004 21.3 6.6 49 84-136 54-102 (131)
339 1k1a_A B-cell lymphoma 3-encod 34.9 1.6E+02 0.0056 23.0 11.8 85 93-178 13-102 (241)
340 4gq2_M Nucleoporin NUP120; bet 34.1 3.8E+02 0.013 27.0 13.2 48 299-347 899-950 (950)
341 2fu4_A Ferric uptake regulatio 33.6 92 0.0031 19.7 7.1 61 76-137 7-68 (83)
342 3t5v_B Nuclear mRNA export pro 33.1 1.3E+02 0.0045 27.2 7.5 64 298-362 177-249 (455)
343 3aji_A 26S proteasome non-ATPa 32.7 87 0.003 24.6 6.0 15 234-248 13-27 (231)
344 2yru_A Steroid receptor RNA ac 31.8 69 0.0023 22.5 4.3 43 73-115 48-90 (118)
345 2o03_A Probable zinc uptake re 31.4 77 0.0026 22.6 4.8 46 267-312 15-60 (131)
346 2r9g_A AAA ATPase, central reg 30.9 1.9E+02 0.0065 22.6 11.0 63 268-332 17-87 (204)
347 2b7e_A PRE-mRNA processing pro 30.7 44 0.0015 20.0 2.7 30 67-96 2-31 (59)
348 2xig_A Ferric uptake regulatio 30.7 1.6E+02 0.0054 21.6 8.2 56 328-385 22-77 (150)
349 3mv2_A Coatomer subunit alpha; 30.5 2.5E+02 0.0087 23.9 11.3 116 272-405 124-243 (325)
350 3ygs_P Procaspase 9; apoptosis 30.2 61 0.0021 21.7 3.8 36 136-171 52-87 (97)
351 1o3x_A ADP-ribosylation factor 30.0 5.9 0.0002 29.0 -1.4 29 19-47 8-36 (140)
352 3eyy_A Putative iron uptake re 29.9 1.6E+02 0.0055 21.4 7.0 59 325-386 11-69 (145)
353 2f6m_A Suppressor protein STP2 29.3 1E+02 0.0035 18.9 4.5 45 264-309 4-48 (65)
354 3mwm_A ZUR, putative metal upt 29.2 71 0.0024 23.1 4.3 45 267-311 18-62 (139)
355 1oyz_A Hypothetical protein YI 29.1 2.3E+02 0.0079 23.0 22.6 21 376-397 242-262 (280)
356 3bqo_A Telomeric repeat-bindin 28.5 79 0.0027 24.6 4.4 24 340-363 124-147 (211)
357 3eiq_C Programmed cell death p 27.7 3E+02 0.01 23.9 18.0 65 265-331 220-286 (358)
358 2rfa_A Transient receptor pote 27.5 2.2E+02 0.0074 22.1 8.1 21 343-363 161-181 (232)
359 3kea_A K1L; tropism, ANK repea 27.5 1.1E+02 0.0037 25.3 5.8 136 35-178 43-184 (285)
360 4ets_A Ferric uptake regulatio 27.4 1.9E+02 0.0066 21.5 7.1 73 313-387 13-87 (162)
361 2w57_A Ferric uptake regulatio 27.2 1.8E+02 0.0063 21.2 6.9 52 51-102 16-68 (150)
362 1mzb_A Ferric uptake regulatio 27.1 1.7E+02 0.0059 20.9 6.6 52 51-102 17-69 (136)
363 2ko4_A Mediator of RNA polymer 27.0 1.3E+02 0.0043 19.3 4.3 39 39-77 22-62 (81)
364 4g8k_A 2-5A-dependent ribonucl 26.9 2.8E+02 0.0096 23.2 11.7 262 156-440 26-303 (337)
365 3bge_A Predicted ATPase; struc 26.7 2.3E+02 0.0077 22.1 10.1 45 268-312 10-57 (201)
366 1bpo_A Protein (clathrin); cla 26.1 3.7E+02 0.013 24.4 11.0 139 33-177 342-481 (494)
367 3pvs_A Replication-associated 26.1 3.6E+02 0.012 24.2 14.8 104 83-201 191-304 (447)
368 2fe3_A Peroxide operon regulat 25.6 1.9E+02 0.0066 20.9 8.7 55 328-384 17-71 (145)
369 3ctd_A Putative ATPase, AAA fa 25.2 2.5E+02 0.0086 22.1 10.2 66 265-331 35-108 (213)
370 2p1h_A APAF-1, apoptotic prote 25.1 1.5E+02 0.0051 19.5 6.0 35 134-168 49-83 (94)
371 2qx5_A Nucleoporin NIC96; mRNA 24.6 4.7E+02 0.016 25.0 14.9 218 158-394 300-563 (661)
372 2qq8_A TBC1 domain family memb 24.4 1.2E+02 0.0043 25.9 5.7 110 66-179 169-293 (334)
373 3ljn_A Hypothetical protein; a 24.3 3.3E+02 0.011 23.1 10.1 85 342-428 179-266 (364)
374 1bd8_A P19INK4D CDK4/6 inhibit 24.1 2E+02 0.0068 20.5 6.5 15 163-177 10-24 (156)
375 2rfa_A Transient receptor pote 23.9 2.5E+02 0.0087 21.7 7.4 23 194-216 158-180 (232)
376 3eu9_A Huntingtin-interacting 23.7 2.6E+02 0.0088 21.7 10.7 15 131-145 49-63 (240)
377 2fv2_A RCD1 required for cell 23.2 2.3E+02 0.0078 23.2 6.4 57 304-360 180-236 (268)
378 1bd8_A P19INK4D CDK4/6 inhibit 22.6 1E+02 0.0036 22.1 4.4 12 64-75 12-23 (156)
379 3utm_A Tankyrase-1; tankyrase, 22.3 3.4E+02 0.012 22.6 12.7 109 127-248 27-145 (351)
380 3t5v_B Nuclear mRNA export pro 22.2 2.3E+02 0.0077 25.6 7.0 61 336-396 179-247 (455)
381 2ymb_A MITD1, MIT domain-conta 22.1 19 0.00064 29.5 0.0 43 3-45 6-48 (257)
382 1oai_A Nuclear RNA export fact 21.7 90 0.0031 18.6 3.0 24 346-369 33-56 (59)
383 2dod_A Transcription elongatio 21.2 1.6E+02 0.0053 19.1 4.2 29 313-342 16-44 (82)
384 2bn5_A PSI; nuclear protein, s 21.2 96 0.0033 15.8 2.5 23 408-430 7-29 (33)
385 2cwy_A Hypothetical protein TT 20.8 1.9E+02 0.0066 19.2 5.6 50 63-114 13-67 (94)
386 1ug3_A EIF4GI, eukaryotic prot 20.1 4.1E+02 0.014 22.7 10.2 25 226-250 13-37 (339)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.2e-40 Score=317.80 Aligned_cols=410 Identities=10% Similarity=-0.007 Sum_probs=353.6
Q ss_pred hhHHHhhhhhhhhhcccccCCcchHHHhhccC--CCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhc------------
Q 048090 15 CLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFL--NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH------------ 80 (447)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------------ 80 (447)
||..++..+...|.+.| ++++|..+|+.+ .++++.+|+.++.+|.+.|++++|.++|+++...
T Consensus 115 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 191 (597)
T 2xpi_A 115 GNPNDAFWLAQVYCCTG---DYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLM 191 (597)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------C
T ss_pred CCchHHHHHHHHHHHcC---cHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccc
Confidence 45677888888888888 588999999887 4678889999999999999999999999853221
Q ss_pred ---CCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHH------------------------------
Q 048090 81 ---GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSAL------------------------------ 127 (447)
Q Consensus 81 ---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------------------------ 127 (447)
+..++..+|+.++.++.+.|++++|.++|+++.+.+ +.+...+..+
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (597)
T 2xpi_A 192 QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF 270 (597)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH
T ss_pred cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHH
Confidence 234467889999999999999999999999998865 2233333322
Q ss_pred --------HHHHHccCChhhHHHHhccCCC--CchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHH
Q 048090 128 --------IDLYAKLLLIHDAELMFDEIPV--KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197 (447)
Q Consensus 128 --------~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 197 (447)
+..|.+.|++++|.++|+++.. ++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.++
T Consensus 271 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 349 (597)
T 2xpi_A 271 LRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASL 349 (597)
T ss_dssp HHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHH
Confidence 4556678899999999999886 789999999999999999999999999998875 44778899999999
Q ss_pred hcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCC
Q 048090 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY 277 (447)
Q Consensus 198 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 277 (447)
.+.|++++|..+++.+.+. .+.+..++..++.+|.+.|++++|.++|+++... .+.+..+|+.++.+|.+.|+
T Consensus 350 ~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~ 422 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDR---HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM----DPQFGPAWIGFAHSFAIEGE 422 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHH---CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTC
T ss_pred HHhCCHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999976 4567889999999999999999999999987665 55678899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 048090 278 FKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLIN 357 (447)
Q Consensus 278 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 357 (447)
+++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+
T Consensus 423 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 499 (597)
T 2xpi_A 423 HDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQ 499 (597)
T ss_dssp HHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999864 347889999999999999999999999999875 24468899999999999999999999999
Q ss_pred HHHhC----CCCCCc-hHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 358 EMLDR----GHGSSS-VSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 358 ~~~~~----~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
++.+. +..|++ ..+|..++.+|.+.|++++|...++++++.+|+++.+|..++.+|.+.|++++|.+.++++.+
T Consensus 500 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~- 578 (597)
T 2xpi_A 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA- 578 (597)
T ss_dssp HHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh-
Confidence 99876 555754 678999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCccc
Q 048090 433 GLKKDVGCS 441 (447)
Q Consensus 433 ~~~p~~~~~ 441 (447)
+.|+....
T Consensus 579 -~~p~~~~~ 586 (597)
T 2xpi_A 579 -ISPNEIMA 586 (597)
T ss_dssp -HCTTCHHH
T ss_pred -cCCCChHH
Confidence 45554433
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.5e-37 Score=297.21 Aligned_cols=381 Identities=10% Similarity=-0.075 Sum_probs=207.2
Q ss_pred CcchHHHhhccCCCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHH
Q 048090 35 NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114 (447)
Q Consensus 35 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 114 (447)
....+...+..++.+++..|+.++..+.+.|++++|..+|++|.. ..|+..++..++.++.+.|++++|.++++.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 145 (597)
T 2xpi_A 68 SFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL 145 (597)
T ss_dssp --------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG
T ss_pred ccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc
Confidence 355566666666666777778888888888888888888877774 356667777777777778888888877777654
Q ss_pred cCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCC-------------------chhhHHHHHHHHHhcCCHHHHHHHH
Q 048090 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK-------------------NSVCANALLSGYCEAKLWAGGLELV 175 (447)
Q Consensus 115 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~a~~~~ 175 (447)
. +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|.++|
T Consensus 146 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 223 (597)
T 2xpi_A 146 Y--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECY 223 (597)
T ss_dssp G--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred c--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2 567777777778888888888888888754332 3667777778888888888887777
Q ss_pred HhhhhcCC----------------------------------------------------------------------CC
Q 048090 176 RLMPALGL----------------------------------------------------------------------DY 185 (447)
Q Consensus 176 ~~~~~~~~----------------------------------------------------------------------~~ 185 (447)
++|.+.+. ++
T Consensus 224 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 303 (597)
T 2xpi_A 224 KEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEK 303 (597)
T ss_dssp HHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGG
T ss_pred HHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCc
Confidence 77765431 13
Q ss_pred cHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhH
Q 048090 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265 (447)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 265 (447)
+..++..++.++.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+|+.+... .+.+..+|
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~ 376 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEID---PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR----HPEKAVTW 376 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTSHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh----CcccHHHH
Confidence 33344444444444444444444444444431 123344444444444444444444444433322 23344445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH
Q 048090 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345 (447)
Q Consensus 266 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 345 (447)
+.++..|.+.|++++|.++|+++.+.. +.+..+|..++.++.+.|++++|.++|+++.+. .+.+..+|..++.+|.+
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHH
Confidence 555555555555555555555554431 123444555555555555555555555555432 12234445555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhh------CCCc-hhHHHHHHHHHHhcCC
Q 048090 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL------DPHN-VGIYVMLSNLYAKFCM 418 (447)
Q Consensus 346 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~l~~~~~~~g~ 418 (447)
.|++++|.++|+++.+.. |++..+|..++.+|.+.|++++|...++++.+. .|.+ ..+|..++.+|.+.|+
T Consensus 454 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 454 LGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 555555555555554443 444444555555555555555555555555444 2222 3445555555555555
Q ss_pred hHHHHHHHHHHHH
Q 048090 419 WDEIGQLRELMKE 431 (447)
Q Consensus 419 ~~~A~~~~~~m~~ 431 (447)
+++|.+.++++.+
T Consensus 532 ~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 532 YDAAIDALNQGLL 544 (597)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.5e-30 Score=237.68 Aligned_cols=368 Identities=11% Similarity=-0.010 Sum_probs=205.2
Q ss_pred CcchHHHhhccC---CCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHH
Q 048090 35 NLGTLTNCLKFL---NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111 (447)
Q Consensus 35 ~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 111 (447)
++++|...+..+ .|.++..+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++|...|++
T Consensus 14 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 92 (388)
T 1w3b_A 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRH 92 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 456666555543 23334445555555556666666666665555542 33455566666666666666666666666
Q ss_pred HHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCC--CC-chhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHh
Q 048090 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP--VK-NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF 188 (447)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 188 (447)
+++.. |.+..+|..+..++.+.|++++|.+.|+++. .| +...+..+...+...|++++|.+.|+++.+.. +.+..
T Consensus 93 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 170 (388)
T 1w3b_A 93 ALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAV 170 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHH
Confidence 65542 2334455556666666666666666665543 12 33445555555555666666666666655542 22344
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHH
Q 048090 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268 (447)
Q Consensus 189 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 268 (447)
++..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|+++... .+.+..++..+
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l 243 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL----SPNHAVVHGNL 243 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH----CTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CcCCHHHHHHH
Confidence 55555556666666666666666665552 224455555566666666666666666544443 23345555556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC
Q 048090 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348 (447)
Q Consensus 269 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 348 (447)
..++.+.|++++|...|+++.+.+ +.+..++..+..++.+.|++++|...|+++.+. .+.+..++..+...+.+.|+
T Consensus 244 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~ 320 (388)
T 1w3b_A 244 ACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCC
Confidence 666666666666666666665532 113445555556666666666666666665543 23345555566666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcC
Q 048090 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFC 417 (447)
Q Consensus 349 ~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 417 (447)
+++|...++++.+.. |++..++..++.++.+.|++++|...++++++..|.++.+|..++..+...|
T Consensus 321 ~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 321 IEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 666666666665543 5555556666666666666666666666666666666666666655554444
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=9e-31 Score=239.19 Aligned_cols=366 Identities=14% Similarity=0.026 Sum_probs=321.7
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCC
Q 048090 57 VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136 (447)
Q Consensus 57 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 136 (447)
+...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++..++.. +.+..+|..+..++.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 4566788999999999999998863 2345566777778889999999999999998864 6678899999999999999
Q ss_pred hhhHHHHhccCC---CCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHH
Q 048090 137 IHDAELMFDEIP---VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213 (447)
Q Consensus 137 ~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 213 (447)
+++|+..|+++. +.+..+|..+..++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999875 3356689999999999999999999999998864 234456777888899999999999999999
Q ss_pred HHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048090 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293 (447)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 293 (447)
.+.. +.+..++..+...+...|++++|...|+++... .+.+...|..+...+...|++++|...+++.....
T Consensus 162 l~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~- 233 (388)
T 1w3b_A 162 IETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS- 233 (388)
T ss_dssp HHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-
T ss_pred HHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 9873 346789999999999999999999999988775 55667889999999999999999999999998853
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhH
Q 048090 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372 (447)
Q Consensus 294 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 372 (447)
+.+..++..+..++...|++++|...|+++.+. .| +..+|..+..++.+.|++++|.+.++++.+.. |++..++
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 308 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSL 308 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHH
Confidence 225788999999999999999999999999864 45 47889999999999999999999999999886 8899999
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCcc
Q 048090 373 GALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGC 440 (447)
Q Consensus 373 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 440 (447)
..++..+...|++++|...++++++..|++..++..++.+|.+.|++++|.+.++++.+ ..|+...
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~ 374 (388)
T 1w3b_A 309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFAD 374 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999986 5666443
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=2.5e-30 Score=240.17 Aligned_cols=187 Identities=10% Similarity=0.056 Sum_probs=154.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCC---------cHHHHHHHHHHHHHhhhcCCCC
Q 048090 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLS---------AAEFGRQVHAYMIRKCCNLGND 223 (447)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~ 223 (447)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+ .++.|.++|++|... |+.||
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~--G~~Pd 104 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD--KVVPN 104 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT--TCCCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh--CCCCC
Confidence 3567778888888888888888888888888888888888888887554 367788888888887 78888
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048090 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTV 303 (447)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 303 (447)
..+|+++|.+|++.|++++|.++|++|.. .|..||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.|
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~---~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~L 181 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKA---FGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAAL 181 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH---TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 88888888888888888888888885544 478888888888888888888888888888888888888888888888
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH
Q 048090 304 ISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345 (447)
Q Consensus 304 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 345 (447)
|.+|++.|++++|.++|++|.+. +..|+..||+.++..|+.
T Consensus 182 i~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred HHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 88888888888888888888776 888888888888887765
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.2e-31 Score=246.21 Aligned_cols=216 Identities=11% Similarity=-0.009 Sum_probs=180.7
Q ss_pred hhHHHHHHHHHhcCCCCch-hhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhcc
Q 048090 68 LYALKTFSFMHVHGIFLDT-YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146 (447)
Q Consensus 68 ~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 146 (447)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 3455566777777766554 357888999999999999999999999999999999999999999887764432
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhH
Q 048090 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226 (447)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 226 (447)
.+.+..++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+. |+.||..+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~--g~~Pd~~t 142 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF--GIQPRLRS 142 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCCCCHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCccce
Confidence 234567889999999999999999999999999999999999999999999998 89999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048090 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306 (447)
Q Consensus 227 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 306 (447)
|+.+|.+|++.|++++|.++|++|.. .|..||..+|++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~---~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~ 219 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVE---SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEW 219 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHH
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 99999999999999999999996554 589999999999999999999999999999999999999999999999998
Q ss_pred Hhcc
Q 048090 307 CSHT 310 (447)
Q Consensus 307 ~~~~ 310 (447)
++..
T Consensus 220 F~s~ 223 (501)
T 4g26_A 220 FKSE 223 (501)
T ss_dssp HHSH
T ss_pred HhcC
Confidence 8764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-26 Score=219.98 Aligned_cols=398 Identities=9% Similarity=-0.058 Sum_probs=319.4
Q ss_pred HHHhhhhhhhhhcccccCCcchHHHhhccCC--CCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHH
Q 048090 17 IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLN--PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94 (447)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 94 (447)
...+-.....+.+.| ++++|...|+++. .|++.+|..+..++.+.|++++|.+.|+++.+.+ +.+..++..+..
T Consensus 6 a~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNK---KYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTS---CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc---cHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 455666677777777 6999999999874 4788899999999999999999999999998875 335678899999
Q ss_pred HhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHh------------------------------
Q 048090 95 ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF------------------------------ 144 (447)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~------------------------------ 144 (447)
++...|++++|...|+.+.+.+ +++......++..+........+.+.+
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 9999999999999999999876 344444444444433322222222211
Q ss_pred --------ccCC---------CC-chhhHHHHHHHHHh---cCCHHHHHHHHHhhhh-----cCC--------CCcHhhH
Q 048090 145 --------DEIP---------VK-NSVCANALLSGYCE---AKLWAGGLELVRLMPA-----LGL--------DYDHFTL 190 (447)
Q Consensus 145 --------~~~~---------~~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~ 190 (447)
.... .| +...+......+.. .|++++|...++++.+ ... +.+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 1110 11 24444555555554 8999999999999887 311 2234577
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHH
Q 048090 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270 (447)
Q Consensus 191 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~ 270 (447)
..+...+...|++++|...++.+.+.. |+...+..+..++...|++++|...++++... .+.+..++..+..
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~ 312 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELF----PRVNSYIYMALIMADRNDSTEYYNYFDKALKL----DSNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT----CTTCTHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC----ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc----CcCCHHHHHHHHH
Confidence 788888999999999999999999873 22788899999999999999999999977664 4557788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHH
Q 048090 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350 (447)
Q Consensus 271 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 350 (447)
.+...|++++|...++++.+... .+..++..+...+...|++++|...++++.+. .+.+...+..+...+.+.|+++
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 389 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFD 389 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999988642 35678888999999999999999999999875 2335778889999999999999
Q ss_pred HHHHHHHHHHhCCCCCCch------HhHHHHHHHHHh---cCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHH
Q 048090 351 KAWKLINEMLDRGHGSSSV------SMWGALLSACHD---CGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421 (447)
Q Consensus 351 ~A~~~~~~~~~~~~~p~~~------~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 421 (447)
+|...++++.... |.+. .++..++.++.. .|++++|...++++++..|.+..++..++.+|.+.|++++
T Consensus 390 ~A~~~~~~a~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 467 (514)
T 2gw1_A 390 KALKQYDLAIELE--NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE 467 (514)
T ss_dssp HHHHHHHHHHHHH--HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhh--hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH
Confidence 9999999998765 4443 279999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc
Q 048090 422 IGQLRELMKEK 432 (447)
Q Consensus 422 A~~~~~~m~~~ 432 (447)
|.+.+++..+.
T Consensus 468 A~~~~~~a~~~ 478 (514)
T 2gw1_A 468 AITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999874
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=7.7e-26 Score=210.76 Aligned_cols=368 Identities=10% Similarity=-0.018 Sum_probs=268.3
Q ss_pred hHHHhhccCC---CCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHH
Q 048090 38 TLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114 (447)
Q Consensus 38 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 114 (447)
.+...+.+.. +.++..|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++++
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444433 3455678888999999999999999999998763 34678888889999999999999999999998
Q ss_pred cCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCC---ch---hhHHHH------------HHHHHhcCCHHHHHHHHH
Q 048090 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK---NS---VCANAL------------LSGYCEAKLWAGGLELVR 176 (447)
Q Consensus 115 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~l------------~~~~~~~~~~~~a~~~~~ 176 (447)
.+ +.+..++..+..+|.+.|++++|.+.|+++... +. ..+..+ ...+...|++++|+..|+
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 75 556778888899999999999999999887632 33 555555 344788889999999988
Q ss_pred hhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhccc
Q 048090 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256 (447)
Q Consensus 177 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 256 (447)
++.+.. +.+...+..+..++.+.|++++|...++.+.+.. +.+..++..++.+|...|++++|...|+++...
T Consensus 168 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 240 (450)
T 2y4t_A 168 KILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK---NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--- 240 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 888764 4567778888888888899999999998888873 346778888888888889999999888877654
Q ss_pred CCCcchhhHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhccCcHHHHHHH
Q 048090 257 EINKDVVLWTSM------------LGVYGRNGYFKEVIKLYEAMLMNGTKPD-----EVAFVTVISACSHTGQVKLGIEY 319 (447)
Q Consensus 257 ~~~~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~ 319 (447)
.+.+...+..+ ...+.+.|++++|...|+++.+. .|+ ...+..+..++.+.|++++|...
T Consensus 241 -~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 241 -DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34444455444 67788888888888888888774 343 34677777888888888888888
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHH------------HHhcC----
Q 048090 320 FEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA------------CHDCG---- 383 (447)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g---- 383 (447)
++++.+. .+.+...|..+..+|...|++++|...++++++.. |++..++..+..+ |...|
T Consensus 318 ~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 318 CSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN--ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--cchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 8887754 13357778888888888888888888888888765 7777777777633 44444
Q ss_pred -CccHHHHHHHH-HhhhCCCch----------hHHHHHHHHHHhcCChHH
Q 048090 384 -KFELGKLAAQK-ALELDPHNV----------GIYVMLSNLYAKFCMWDE 421 (447)
Q Consensus 384 -~~~~a~~~~~~-~~~~~~~~~----------~~~~~l~~~~~~~g~~~~ 421 (447)
+.+++.+.+++ +++..|++. ..+..+..+|...++.++
T Consensus 394 ~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 394 AKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp CCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 45666777775 555555421 245555555555555443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=9.1e-26 Score=210.26 Aligned_cols=352 Identities=10% Similarity=-0.027 Sum_probs=285.4
Q ss_pred hHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCC
Q 048090 69 YALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP 148 (447)
Q Consensus 69 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 148 (447)
.+...+....... +.+...+..+...+.+.|++++|..+|+.+++.. +.+..++..+..++...|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444454554432 3467788999999999999999999999999864 5678889999999999999999999999876
Q ss_pred ---CCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcH---hhHHHH------------HHHHhcCCcHHHHHHHH
Q 048090 149 ---VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDH---FTLSAL------------LRACAGLSAAEFGRQVH 210 (447)
Q Consensus 149 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~ 210 (447)
+.+..++..+...|.+.|++++|.+.|+++.+.. +.+. ..+..+ ...+...|++++|...+
T Consensus 88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3467889999999999999999999999998863 2233 455444 44478899999999999
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048090 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290 (447)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 290 (447)
+.+.+. .+.+..++..++.+|...|++++|...|+++... .+.+..+|..+..+|...|++++|...|+++..
T Consensus 167 ~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 167 DKILEV---CVWDAELRELRAECFIKEGEPRKAISDLKAASKL----KNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH----HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHh---CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999987 3457889999999999999999999999987665 456788999999999999999999999999987
Q ss_pred CCCCCCHHHHHHH------------HHHHhccCcHHHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHHcCCHHHHH
Q 048090 291 NGTKPDEVAFVTV------------ISACSHTGQVKLGIEYFEWMVHDYKLEPG-----PEHYSCLVDLLCRAGELDKAW 353 (447)
Q Consensus 291 ~~~~p~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~ 353 (447)
.. +.+...+..+ ...+...|++++|...|+++.+. .|+ ...|..+..++.+.|++++|.
T Consensus 240 ~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 240 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred hC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 53 2234444444 78899999999999999999875 454 457888999999999999999
Q ss_pred HHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHH------------HHhcC----
Q 048090 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNL------------YAKFC---- 417 (447)
Q Consensus 354 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g---- 417 (447)
..++++.... |++..+|..++.+|...|++++|...++++++..|.++.++..+..+ |...|
T Consensus 316 ~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 316 RVCSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 9999999876 88899999999999999999999999999999999999999999844 44445
Q ss_pred -ChHHHHHHHHHHHHcCCCCC
Q 048090 418 -MWDEIGQLRELMKEKGLKKD 437 (447)
Q Consensus 418 -~~~~A~~~~~~m~~~~~~p~ 437 (447)
+.+++.+.++++.. ...||
T Consensus 394 ~~~~~~~~~y~~~~l-~~~pd 413 (450)
T 2y4t_A 394 AKKQEIIKAYRKLAL-QWHPD 413 (450)
T ss_dssp CCTTHHHHHHHHHHH-HSCGG
T ss_pred CCHHHHHHHHHHHHH-HhCCC
Confidence 56677777776432 24455
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8e-26 Score=214.30 Aligned_cols=381 Identities=9% Similarity=-0.077 Sum_probs=302.1
Q ss_pred hhhHHHhhhhhhhhhcccccCCcchHHHhhccC---CCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHH
Q 048090 14 ICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFL---NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALC 90 (447)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 90 (447)
+||+.++..+...|.+.| ++++|...|++. .+.++.+|..+..++.+.|++++|...|+++.+.+. ++.....
T Consensus 36 ~p~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 111 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVG---DLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIE 111 (514)
T ss_dssp CCCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTH
T ss_pred CccHHHHHhHHHHHHHHh---hHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHH
Confidence 356889999999999988 599999999875 456677899999999999999999999999988753 3444444
Q ss_pred HHHHHhccCCchhHHHHHHHHHH-----------------------------------HcCC---------CCchhhHHH
Q 048090 91 SSLTASTSVKDARFGKQVQAHVT-----------------------------------KSGW---------LSSVFVGSA 126 (447)
Q Consensus 91 ~ll~~~~~~~~~~~a~~~~~~~~-----------------------------------~~~~---------~~~~~~~~~ 126 (447)
.++..+........+.+.+..+. .... +.+...+..
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (514)
T 2gw1_A 112 PMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELM 191 (514)
T ss_dssp HHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHH
Confidence 44443333222222222221110 0000 112334444
Q ss_pred HHHHHHc---cCChhhHHHHhccCCC----------------C-chhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCc
Q 048090 127 LIDLYAK---LLLIHDAELMFDEIPV----------------K-NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYD 186 (447)
Q Consensus 127 l~~~~~~---~g~~~~a~~~~~~~~~----------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 186 (447)
....+.. .|++++|...|+++.. | +..++..+...+...|++++|...++++.+.. |+
T Consensus 192 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~ 269 (514)
T 2gw1_A 192 NGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PR 269 (514)
T ss_dssp HHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cc
Confidence 4444444 8999999999987644 2 45678889999999999999999999998875 44
Q ss_pred HhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHH
Q 048090 187 HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266 (447)
Q Consensus 187 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 266 (447)
...+..+..++...|++++|...++.+.+. .+.+..++..+...+...|++++|...|+++... .+.+...+.
T Consensus 270 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~ 342 (514)
T 2gw1_A 270 VNSYIYMALIMADRNDSTEYYNYFDKALKL---DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL----DPENIFPYI 342 (514)
T ss_dssp HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT---CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT----CSSCSHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc---CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----ChhhHHHHH
Confidence 778888999999999999999999999886 3446788999999999999999999999987664 455678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHH
Q 048090 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDL 342 (447)
Q Consensus 267 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~ 342 (447)
.+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.....-.++ ...+..+...
T Consensus 343 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 343 QLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 99999999999999999999998863 335678888999999999999999999999865222222 3388899999
Q ss_pred HHH---cCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHH
Q 048090 343 LCR---AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410 (447)
Q Consensus 343 ~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 410 (447)
+.. .|++++|...++++.... |++..++..++.++...|++++|...++++++..|.+...+..+.
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKLD--PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HhhhhhcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 999 999999999999999876 888899999999999999999999999999999999888877663
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=1.8e-24 Score=206.28 Aligned_cols=392 Identities=13% Similarity=0.009 Sum_probs=294.1
Q ss_pred HHHhhhhhhhhhcccccCCcchHHHhhccC---CCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHH
Q 048090 17 IIFQSRLMLPYTTCRHKKNLGTLTNCLKFL---NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93 (447)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 93 (447)
...+..+...+.+.| ++++|...|++. .+.++.+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+.
T Consensus 25 a~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 100 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAK---NFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHTT---CCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc---cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence 456666777777777 589999988875 35677888999999999999999999999998864 33677888888
Q ss_pred HHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCC-------------------------
Q 048090 94 TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP------------------------- 148 (447)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------------------------- 148 (447)
.++...|++++|...++ .... .|+.. ...+..+...+....|...++++.
T Consensus 101 ~~~~~~g~~~~A~~~~~-~~~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLS-VLSL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHHcCCHHHHHHHHH-HHhc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 88999999999999986 4332 22211 111222233333344444443332
Q ss_pred ------------CCchh---hHHHHHHHHH--------hcCCHHHHHHHHHhhhhcCCCCc--------HhhHHHHHHHH
Q 048090 149 ------------VKNSV---CANALLSGYC--------EAKLWAGGLELVRLMPALGLDYD--------HFTLSALLRAC 197 (447)
Q Consensus 149 ------------~~~~~---~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~~l~~~~ 197 (447)
..+.. ....+...+. ..|++++|..+++++.+.. |+ ..++..+...+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHH
Confidence 21111 2222222222 1247899999999988763 33 23466667778
Q ss_pred hcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCC
Q 048090 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY 277 (447)
Q Consensus 198 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 277 (447)
...|++++|...++.+.+. .|+...+..+...+...|++++|...|+++... .+.+..++..+...+...|+
T Consensus 254 ~~~~~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINL----HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL----NPEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH----CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC
T ss_pred HhcccHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc----CCCCHHHHHHHHHHHHhcCC
Confidence 8899999999999999987 244778888999999999999999999987665 45677889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 048090 278 FKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLIN 357 (447)
Q Consensus 278 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 357 (447)
+++|...++++.+... .+...+..+..++...|++++|...++++.+. .+.+...+..+...+...|++++|...++
T Consensus 326 ~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp HHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999988642 24677888999999999999999999999875 23457788899999999999999999999
Q ss_pred HHHhCCCCCCchH------hHHHHHHHHHhc----------CCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHH
Q 048090 358 EMLDRGHGSSSVS------MWGALLSACHDC----------GKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421 (447)
Q Consensus 358 ~~~~~~~~p~~~~------~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 421 (447)
++.+.. |.+.. .+..+..++... |++++|...++++++..|.+..++..++.+|.+.|++++
T Consensus 403 ~a~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 403 IAKRLE--EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHH--HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcC--CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 987654 32222 244556777777 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc
Q 048090 422 IGQLRELMKEK 432 (447)
Q Consensus 422 A~~~~~~m~~~ 432 (447)
|.+.+++..+.
T Consensus 481 A~~~~~~al~~ 491 (537)
T 3fp2_A 481 AIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998874
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=1.2e-22 Score=183.04 Aligned_cols=327 Identities=12% Similarity=0.013 Sum_probs=220.4
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 048090 52 LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLY 131 (447)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (447)
..|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+++.. +.+...+..+..++
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 345556666666666666666666666543 2245556666666666666666666666666542 22344445555555
Q ss_pred HccCChhhHHHHhccCCCCc------hhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHH
Q 048090 132 AKLLLIHDAELMFDEIPVKN------SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF 205 (447)
Q Consensus 132 ~~~g~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 205 (447)
...|++++|...|++....+ ...+..+...+. ...+..+...+...|++++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHHH
Confidence 55555555555554443211 111111111000 0011223466778888888
Q ss_pred HHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 048090 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285 (447)
Q Consensus 206 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 285 (447)
|...++.+.+. .+.+...+..+...+...|++++|...++++... .+.+..++..+...+...|++++|...+
T Consensus 139 A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 139 AITFLDKILEV---CVWDAELRELRAECFIKEGEPRKAISDLKAASKL----KSDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp HHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----CSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHh---CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888876 3346777888888888888888888888876654 4556778888888888888888888888
Q ss_pred HHHHhCCCCCCHHHHH------------HHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-h----hhHHHHHHHHHHcCC
Q 048090 286 EAMLMNGTKPDEVAFV------------TVISACSHTGQVKLGIEYFEWMVHDYKLEPG-P----EHYSCLVDLLCRAGE 348 (447)
Q Consensus 286 ~~m~~~~~~p~~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~g~ 348 (447)
++..+.... +...+. .+...+...|++++|...++++.+. .|+ . ..+..+..++...|+
T Consensus 212 ~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 212 RECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccC
Confidence 888775322 233222 2355678889999999999988865 333 2 234557788889999
Q ss_pred HHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhc
Q 048090 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKF 416 (447)
Q Consensus 349 ~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 416 (447)
+++|...++++.+.. |++..++..++.++...|++++|...++++++..|.+..++..+..++...
T Consensus 288 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 288 PVEAIRICSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 999999999988875 888888999999999999999999999999999998888888887765443
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=3.3e-23 Score=197.43 Aligned_cols=372 Identities=12% Similarity=-0.020 Sum_probs=285.5
Q ss_pred hHHHhhhhhhhhhcccccCCcchHHHhhccC---CCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHH
Q 048090 16 LIIFQSRLMLPYTTCRHKKNLGTLTNCLKFL---NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSS 92 (447)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 92 (447)
++.++..+...|.+.| ++++|...|++. .+.++.+|..+..++...|++++|...|+.+ .. .|+.. ...
T Consensus 58 ~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~--~~~~~--~~~ 129 (537)
T 3fp2_A 58 EPVFYSNISACYISTG---DLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL-SL--NGDFD--GAS 129 (537)
T ss_dssp CHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C-------------
T ss_pred CcHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hc--CCCCC--hHH
Confidence 4788888999999888 599999999875 4567788999999999999999999999743 32 22221 122
Q ss_pred HHHhccCCchhHHHHHHHHHHHcC------CCCchh------------------------------hHHHHHHHHHc---
Q 048090 93 LTASTSVKDARFGKQVQAHVTKSG------WLSSVF------------------------------VGSALIDLYAK--- 133 (447)
Q Consensus 93 l~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~------------------------------~~~~l~~~~~~--- 133 (447)
+..+...+....|...++.+.... ..|+.. ....+...+..
T Consensus 130 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 209 (537)
T 3fp2_A 130 IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDE 209 (537)
T ss_dssp --CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhh
Confidence 334444555667777777775431 111111 12222222222
Q ss_pred -----cCChhhHHHHhccCCCC---c-------hhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHh
Q 048090 134 -----LLLIHDAELMFDEIPVK---N-------SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA 198 (447)
Q Consensus 134 -----~g~~~~a~~~~~~~~~~---~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 198 (447)
.|++++|..+|+++... + ..++..+...+...|++++|...+++..+. .|+...+..+...+.
T Consensus 210 ~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 287 (537)
T 3fp2_A 210 GYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLA 287 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHH
Confidence 24788999999887632 2 235777778889999999999999999986 466788889999999
Q ss_pred cCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCH
Q 048090 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278 (447)
Q Consensus 199 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 278 (447)
..|++++|...++.+.+.. +.+..++..+...+...|++++|...|+++... .+.+...+..+..++...|++
T Consensus 288 ~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~ 360 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDLN---PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL----NPENVYPYIQLACLLYKQGKF 360 (537)
T ss_dssp CSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCSHHHHHHHHHHHHTTCH
T ss_pred HhcCHHHHHHHHHHHhccC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCH
Confidence 9999999999999999973 447888999999999999999999999987765 455678899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHHc--------
Q 048090 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRA-------- 346 (447)
Q Consensus 279 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~-------- 346 (447)
++|...++++.+.. +.+...+..+...+...|++++|...|+++.+...-.+. ...+..+...+...
T Consensus 361 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 439 (537)
T 3fp2_A 361 TESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQL 439 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----C
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhh
Confidence 99999999998864 335678888999999999999999999998764211111 22244555677777
Q ss_pred --CCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHH
Q 048090 347 --GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407 (447)
Q Consensus 347 --g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 407 (447)
|++++|...++++.+.. |++..++..++.++...|++++|...++++++..|.+.....
T Consensus 440 ~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 440 DEEKFNAAIKLLTKACELD--PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred hHhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999886 888999999999999999999999999999999998776544
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=4.2e-22 Score=179.46 Aligned_cols=315 Identities=11% Similarity=-0.030 Sum_probs=240.6
Q ss_pred chhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCC---CCchhhHHHHHHH
Q 048090 85 DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP---VKNSVCANALLSG 161 (447)
Q Consensus 85 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~ 161 (447)
+...+..+...+...|++++|...++.+++.. +.+..++..+..++...|++++|...|++.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 34566667777777788888888888777753 4456666667777777777777777776654 2245666667777
Q ss_pred HHhcCCHHHHHHHHHhhhhcCCCC----cHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhc
Q 048090 162 YCEAKLWAGGLELVRLMPALGLDY----DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237 (447)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (447)
+...|++++|...+++..+. .| +...+..+.... ....+..+...+...
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------------------------~~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------------------------EMQRLRSQALDAFDG 133 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHc
Confidence 77777777777777776654 23 111221111110 011223456788999
Q ss_pred CChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 048090 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317 (447)
Q Consensus 238 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 317 (447)
|++++|...++++... .+.+...+..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|.
T Consensus 134 ~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 208 (359)
T 3ieg_A 134 ADYTAAITFLDKILEV----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSL 208 (359)
T ss_dssp TCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999987765 56678889999999999999999999999999864 446788999999999999999999
Q ss_pred HHHHHHHHhcCCCCC-hhhHH------------HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchH----hHHHHHHHHH
Q 048090 318 EYFEWMVHDYKLEPG-PEHYS------------CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVS----MWGALLSACH 380 (447)
Q Consensus 318 ~~~~~~~~~~~~~~~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~~l~~~~~ 380 (447)
..++++.+. .|+ ...+. .+...+.+.|++++|...++++.+.. |++.. .+..++.++.
T Consensus 209 ~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 209 SEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHH
Confidence 999999875 343 33333 23667899999999999999999876 66653 3556889999
Q ss_pred hcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCc
Q 048090 381 DCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVG 439 (447)
Q Consensus 381 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 439 (447)
..|++++|...++++++..|.++.++..++.+|...|++++|.+.+++..+ +.|+..
T Consensus 284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~ 340 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQ 340 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCH
T ss_pred HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCh
Confidence 999999999999999999999999999999999999999999999999986 456543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=7.4e-22 Score=175.75 Aligned_cols=292 Identities=12% Similarity=-0.032 Sum_probs=228.7
Q ss_pred CCchhhHHHHHHHHHccCChhhHHHHhccCC---CCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHH
Q 048090 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIP---VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALL 194 (447)
Q Consensus 118 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 194 (447)
+.+...+..+...+...|++++|.++|+++. ..+...+..++..+...|++++|...++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 4455566666666777777777777776654 2245556667777778888888888888887753 34566777777
Q ss_pred HHHhcCC-cHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHH
Q 048090 195 RACAGLS-AAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273 (447)
Q Consensus 195 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 273 (447)
..+...| ++++|...++++.+.. +.+...+..+...+...|++++|...|+++... .+.+...+..+...+.
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE---KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL----MKGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC---TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----TTTCSHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----ccccHHHHHHHHHHHH
Confidence 8888888 8888888888887762 335677888888888888999988888877665 4445667777888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC-------CCCChhhHHHHHHHHHHc
Q 048090 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK-------LEPGPEHYSCLVDLLCRA 346 (447)
Q Consensus 274 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~ 346 (447)
..|++++|...+++..+.. +.+..++..+...+...|++++|...++++.+... .+....++..+..++...
T Consensus 171 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 8999999999999888764 33577888888888999999999999988876421 133467888999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHH-HhcCChH
Q 048090 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY-AKFCMWD 420 (447)
Q Consensus 347 g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 420 (447)
|++++|...++++.+.. |++..++..++.++...|++++|...++++++..|.++.++..++.++ ...|+.+
T Consensus 250 g~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 250 KKYAEALDYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred cCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999999999999876 888888999999999999999999999999999999999999999988 4556543
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=3.8e-21 Score=173.98 Aligned_cols=286 Identities=12% Similarity=-0.005 Sum_probs=230.3
Q ss_pred HccCChhhHHH-HhccCC---CC----chhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcH
Q 048090 132 AKLLLIHDAEL-MFDEIP---VK----NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA 203 (447)
Q Consensus 132 ~~~g~~~~a~~-~~~~~~---~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 203 (447)
...|++++|.+ .|++.. +. +...+..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34577888887 776543 11 34568888899999999999999999998864 45677888888999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHH---------------H
Q 048090 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS---------------M 268 (447)
Q Consensus 204 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~---------------l 268 (447)
++|...++.+.+.. +.+..++..+..+|...|++++|...|+++... .+.+...+.. .
T Consensus 115 ~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 1fch_A 115 LLAISALRRCLELK---PDNQTALMALAVSFTNESLQRQACEILRDWLRY----TPAYAHLVTPAEEGAGGAGLGPSKRI 187 (368)
T ss_dssp HHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----STTTGGGCC---------------CT
T ss_pred HHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CcCcHHHHHHHHHHhhhhcccHHHHH
Confidence 99999999999873 447788899999999999999999999977654 2223333221 1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcC
Q 048090 269 LGVYGRNGYFKEVIKLYEAMLMNGTKP-DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347 (447)
Q Consensus 269 ~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 347 (447)
+..+...|++++|...++++.+..... +..++..+...+...|++++|...|+++... .+.+...+..+...+...|
T Consensus 188 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGN 265 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcC
Confidence 333448999999999999998864221 4788999999999999999999999999875 2345788999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCc-----------hhHHHHHHHHHHhc
Q 048090 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN-----------VGIYVMLSNLYAKF 416 (447)
Q Consensus 348 ~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~ 416 (447)
++++|...++++++.. |++..++..++.++...|++++|...++++++..|.+ ..+|..++.+|...
T Consensus 266 ~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 343 (368)
T 1fch_A 266 QSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML 343 (368)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHh
Confidence 9999999999999876 8889999999999999999999999999999988877 88999999999999
Q ss_pred CChHHHHHHHHHH
Q 048090 417 CMWDEIGQLRELM 429 (447)
Q Consensus 417 g~~~~A~~~~~~m 429 (447)
|++++|..++++.
T Consensus 344 g~~~~A~~~~~~~ 356 (368)
T 1fch_A 344 GQSDAYGAADARD 356 (368)
T ss_dssp TCGGGHHHHHTTC
T ss_pred CChHhHHHhHHHH
Confidence 9999999887643
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=6.4e-21 Score=169.69 Aligned_cols=277 Identities=12% Similarity=0.040 Sum_probs=238.9
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHH
Q 048090 150 KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229 (447)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 229 (447)
.+...+..+...+...|++++|.++++++.+.. +.+...+..++.++...|++++|...++++.+. .+.+...+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~ 95 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDL---YPSNPVSWFA 95 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTSTHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHH
Confidence 466778888999999999999999999998864 445567777888889999999999999999997 3447788999
Q ss_pred HHHHHHhcC-ChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 048090 230 LIEMYGKCG-LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308 (447)
Q Consensus 230 l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 308 (447)
+...+...| ++++|...|+++... .+.+...|..+...+...|++++|...++++.+.... +...+..+...+.
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~ 170 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTL----EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTT----CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHH
Confidence 999999999 999999999987664 4556788999999999999999999999999886422 4566777889999
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-------CCCchHhHHHHHHHHHh
Q 048090 309 HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH-------GSSSVSMWGALLSACHD 381 (447)
Q Consensus 309 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~p~~~~~~~~l~~~~~~ 381 (447)
..|++++|...++++.+. .+.+...+..+...+...|++++|...++++.+... .|....++..++.++..
T Consensus 171 ~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp HTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 999999999999999854 234578899999999999999999999999876421 14456679999999999
Q ss_pred cCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCc
Q 048090 382 CGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVG 439 (447)
Q Consensus 382 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 439 (447)
.|++++|...++++++..|.+..++..++.+|.+.|++++|.+.+++..+ +.|+..
T Consensus 249 ~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~ 304 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDT 304 (330)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCH
T ss_pred hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCch
Confidence 99999999999999999999999999999999999999999999998875 456543
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=3.9e-21 Score=173.80 Aligned_cols=266 Identities=11% Similarity=-0.053 Sum_probs=223.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHH
Q 048090 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230 (447)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 230 (447)
+...+..+...+.+.|++++|.+.|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+..++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ---PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHH
Confidence 55668899999999999999999999998874 4577889999999999999999999999999973 4468899999
Q ss_pred HHHHHhcCChHHHHHHHHhhhhhcccCCCcchhh----------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHH
Q 048090 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL----------WTSMLGVYGRNGYFKEVIKLYEAMLMNGTK-PDEVA 299 (447)
Q Consensus 231 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~ 299 (447)
..+|...|++++|...|+++... .+.+... +..+...+...|++++|...++++.+.... ++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 215 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQ----NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDL 215 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH----CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHh----CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHH
Confidence 99999999999999999987664 2222222 334578899999999999999999986432 15788
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHH
Q 048090 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379 (447)
Q Consensus 300 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~ 379 (447)
+..+...+...|++++|...|+++.+. .+.+..+|..+..+|...|++++|...++++++.. |++..++..++.+|
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHH
Confidence 999999999999999999999999875 24458899999999999999999999999999886 88899999999999
Q ss_pred HhcCCccHHHHHHHHHhhhCCC------------chhHHHHHHHHHHhcCChHHHHHHHHH
Q 048090 380 HDCGKFELGKLAAQKALELDPH------------NVGIYVMLSNLYAKFCMWDEIGQLREL 428 (447)
Q Consensus 380 ~~~g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 428 (447)
...|++++|...++++++..|. +..+|..+..++...|+.+.+..+.++
T Consensus 292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999999998765 367899999999999999998776654
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=4.1e-19 Score=168.61 Aligned_cols=398 Identities=9% Similarity=-0.008 Sum_probs=294.4
Q ss_pred hHHHhhhhhhhhhcccccCCcchHHHhhccCC---CCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHH
Q 048090 16 LIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSS 92 (447)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 92 (447)
|..+|..++.. .+.| +++.|..+|+++. |.++..|..++..+.+.|++++|..+|+++... .|+...|...
T Consensus 12 ~~~~w~~l~~~-~~~~---~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQ---PIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp CHHHHHHHHHH-HHSS---CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred CHHHHHHHHHH-HHhC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence 46788888884 5555 6999999999864 456667999999999999999999999999986 4677777777
Q ss_pred HHHh-ccCCchhHHHH----HHHHHHHc-CCCC-chhhHHHHHHHHHc---------cCChhhHHHHhccCCC-Cc---h
Q 048090 93 LTAS-TSVKDARFGKQ----VQAHVTKS-GWLS-SVFVGSALIDLYAK---------LLLIHDAELMFDEIPV-KN---S 152 (447)
Q Consensus 93 l~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~-~~---~ 152 (447)
+... ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++... |. .
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 6533 34577777665 67766653 5443 45677777776654 6889999999988653 32 1
Q ss_pred hhHHHHHHHH-------------HhcCCHHHHHHHHHhh------hhcC---CCCcH--------hhHHHHHHHHhc---
Q 048090 153 VCANALLSGY-------------CEAKLWAGGLELVRLM------PALG---LDYDH--------FTLSALLRACAG--- 199 (447)
Q Consensus 153 ~~~~~l~~~~-------------~~~~~~~~a~~~~~~~------~~~~---~~~~~--------~~~~~l~~~~~~--- 199 (447)
..|....... .+.+++..|..++.++ .+.. ++|+. ..|...+.....
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 2333222211 1345677777776652 2221 24431 344444333221
Q ss_pred -CCcH----HHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHh-------cCChH-------HHHHHHHhhhhhcccCCCc
Q 048090 200 -LSAA----EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK-------CGLVT-------KALQVFNLAGHRLEGEINK 260 (447)
Q Consensus 200 -~~~~----~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~ 260 (447)
.++. +.+..+|++.+... +.+...|..++..+.+ .|+++ +|..+|++.... -.+.
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~---p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~---~~p~ 319 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST---LLKK 319 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT---TCSS
T ss_pred cCCcchhHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH---hCcc
Confidence 1222 47778999999873 3478888888888876 79987 899999976541 1355
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhhHH
Q 048090 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD--EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG-PEHYS 337 (447)
Q Consensus 261 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 337 (447)
+...|..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|..+|++..+. .|+ ...|.
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~ 394 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYV 394 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHH
Confidence 6888999999999999999999999999984 454 357888888888999999999999999854 343 33333
Q ss_pred HHHHH-HHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchh----HHHHHHHH
Q 048090 338 CLVDL-LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG----IYVMLSNL 412 (447)
Q Consensus 338 ~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~ 412 (447)
..... +...|+.++|..+|++.++.. |++..+|..++..+.+.|+.++|..+|++++...|.++. +|..++..
T Consensus 395 ~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 395 TAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 32222 346899999999999999876 888999999999999999999999999999998765544 88888988
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 048090 413 YAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 413 ~~~~g~~~~A~~~~~~m~~~ 432 (447)
....|+.+.+..+.+++.+.
T Consensus 473 e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 473 ESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 89999999999999998763
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=2.1e-18 Score=162.14 Aligned_cols=365 Identities=12% Similarity=0.009 Sum_probs=297.3
Q ss_pred chHHHhhccC-CCCCCccHHHHHHHHHh----CCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhcc----CCchhHHHH
Q 048090 37 GTLTNCLKFL-NPRNPLPFNVVISDFCR----NGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTS----VKDARFGKQ 107 (447)
Q Consensus 37 ~~A~~~~~~~-~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~ 107 (447)
..+...+... .+.++.++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|.+
T Consensus 24 ~~~~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 24 NVNLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp -CCHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 3344444443 45678888888888888 899999999999998865 56677777777777 889999999
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHc----cCChhhHHHHhccCCCC-chhhHHHHHHHHHh----cCCHHHHHHHHHhh
Q 048090 108 VQAHVTKSGWLSSVFVGSALIDLYAK----LLLIHDAELMFDEIPVK-NSVCANALLSGYCE----AKLWAGGLELVRLM 178 (447)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~ 178 (447)
.|++..+.| ++..+..|...|.. .+++++|...|++.... +...+..+...|.. .+++++|++.|++.
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 999999876 56677778888887 78999999999887643 67778888888887 78999999999999
Q ss_pred hhcCCCCcHhhHHHHHHHHhc----CCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHh----cCChHHHHHHHHhh
Q 048090 179 PALGLDYDHFTLSALLRACAG----LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK----CGLVTKALQVFNLA 250 (447)
Q Consensus 179 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 250 (447)
.+.| +...+..+...+.. .++.++|.+.|++..+. + +...+..+...|.. .+++++|...|++.
T Consensus 178 ~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 178 AEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--G---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 8864 56677778888776 89999999999998876 3 56678888888886 78999999999966
Q ss_pred hhhcccCCCcchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHH
Q 048090 251 GHRLEGEINKDVVLWTSMLGVYGR----NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHT-----GQVKLGIEYFE 321 (447)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~ 321 (447)
... .+...+..+...|.. .+++++|..+|++..+.| +...+..+...+... +++++|..+|+
T Consensus 250 ~~~------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 250 AEQ------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HTT------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHC------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 442 345667777777877 899999999999998764 455666777777766 89999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHh----cCCccHHHHHHHH
Q 048090 322 WMVHDYKLEPGPEHYSCLVDLLCRAG---ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD----CGKFELGKLAAQK 394 (447)
Q Consensus 322 ~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 394 (447)
+..+. + +...+..+...|...| ++++|.++|++..+.+ +..++..|...|.. .+++++|...+++
T Consensus 321 ~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 392 (490)
T 2xm6_A 321 KSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG----EKAAQFNLGNALLQGKGVKKDEQQAAIWMRK 392 (490)
T ss_dssp HHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 98764 2 4567777888888766 7899999999999875 56778999999998 8999999999999
Q ss_pred HhhhCCCchhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCC
Q 048090 395 ALELDPHNVGIYVMLSNLYAK----FCMWDEIGQLRELMKEKGL 434 (447)
Q Consensus 395 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 434 (447)
+.+.+ ++.++..|+..|.+ .+++++|...|++..+.+.
T Consensus 393 A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 393 AAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 98865 57788999999998 8999999999999988764
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.87 E-value=8.7e-20 Score=162.10 Aligned_cols=267 Identities=9% Similarity=-0.048 Sum_probs=220.1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHH
Q 048090 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230 (447)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 230 (447)
+...+..+...+...|++++|..+++++.+.. +.+...+..+..++...|++++|...++++.+. .+.+..++..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l 95 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAAL 95 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CcCCHHHHHHH
Confidence 44556777788888888888888888887764 346667778888888889999999999888887 23467788888
Q ss_pred HHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhCCCCC
Q 048090 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM--------------LG-VYGRNGYFKEVIKLYEAMLMNGTKP 295 (447)
Q Consensus 231 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~m~~~~~~p 295 (447)
...+...|++++|.+.++++... .+.+...+..+ .. .+...|++++|...++++.+.. +.
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~ 170 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLS----QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PN 170 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHT----STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh----CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CC
Confidence 88888999999999988876654 23333334333 33 3778899999999999998864 33
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHH
Q 048090 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375 (447)
Q Consensus 296 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l 375 (447)
+..++..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++.+.. |++..++..+
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l 246 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--PGYVRVMYNM 246 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHH
Confidence 6788999999999999999999999999875 23457889999999999999999999999999876 8888899999
Q ss_pred HHHHHhcCCccHHHHHHHHHhhhCCC------------chhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048090 376 LSACHDCGKFELGKLAAQKALELDPH------------NVGIYVMLSNLYAKFCMWDEIGQLRELMK 430 (447)
Q Consensus 376 ~~~~~~~g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 430 (447)
+.++...|++++|...++++++..|. +..++..++.++.+.|++++|..++++..
T Consensus 247 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 247 AVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999999999999999998 78999999999999999999998887543
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=5.7e-20 Score=166.26 Aligned_cols=281 Identities=10% Similarity=-0.040 Sum_probs=212.1
Q ss_pred CChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHH-HHHhhhhcCC-CC--cHhhHHHHHHHHhcCCcHHHHHHHH
Q 048090 135 LLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE-LVRLMPALGL-DY--DHFTLSALLRACAGLSAAEFGRQVH 210 (447)
Q Consensus 135 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~ 210 (447)
+.++.+...|+.+...+.. .+...|++++|+. .+++...... .| +...+..+...+.+.|++++|...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3344445555555433322 3344588999998 8887665421 11 3456888889999999999999999
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048090 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290 (447)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 290 (447)
+++.+. .+.+..++..+..++...|++++|...|+++... .+.+..++..+..++...|++++|...++++..
T Consensus 88 ~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 88 EAAVQQ---DPKHMEAWQYLGTTQAENEQELLAISALRRCLEL----KPDNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp HHHHHS---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHh---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999987 3457888999999999999999999999988775 566788999999999999999999999999998
Q ss_pred CCCCCCHHHHHH---------------HHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 048090 291 NGTKPDEVAFVT---------------VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355 (447)
Q Consensus 291 ~~~~p~~~~~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 355 (447)
.... +...+.. .+..+...|++++|...|+++.+...-.++..++..+...+.+.|++++|...
T Consensus 161 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 161 YTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp TSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6422 2222211 23344489999999999999987632222578899999999999999999999
Q ss_pred HHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 356 INEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 356 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
+++++... |++..++..++.++...|++++|...++++++..|.+..++..++.+|.+.|++++|...++++.+.
T Consensus 240 ~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 240 FTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999876 8888899999999999999999999999999999999999999999999999999999999999863
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.87 E-value=1.5e-20 Score=166.70 Aligned_cols=280 Identities=14% Similarity=0.070 Sum_probs=135.8
Q ss_pred CcchHHHhhccCCCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHH
Q 048090 35 NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114 (447)
Q Consensus 35 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 114 (447)
++++|..++++++.| .+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++...+
T Consensus 18 ~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 18 NLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 699999999999555 59999999999999999999999653 5778999999999999999999998877766
Q ss_pred cCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHH
Q 048090 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALL 194 (447)
Q Consensus 115 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 194 (447)
. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|..++
T Consensus 90 ~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA 155 (449)
T 1b89_A 90 K--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLA 155 (449)
T ss_dssp ---------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHH
T ss_pred h--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHH
Confidence 3 45578889999999999999999988864 67789999999999999999999999987 3799999
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHh
Q 048090 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274 (447)
Q Consensus 195 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 274 (447)
.++.+.|++++|.+.+.++ + ++.+|..++.+|...|+++.|......+ ..++.....++..|.+
T Consensus 156 ~~L~~Lg~yq~AVea~~KA-----~---~~~~Wk~v~~aCv~~~ef~lA~~~~l~L--------~~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA-----N---STRTWKEVCFACVDGKEFRLAQMCGLHI--------VVHADELEELINYYQD 219 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH-----T---CHHHHHHHHHHHHHTTCHHHHHHTTTTT--------TTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHc-----C---CchhHHHHHHHHHHcCcHHHHHHHHHHH--------HhCHhhHHHHHHHHHH
Confidence 9999999999999999977 2 7889999999999999999997665532 2333335568899999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhcCCCC------ChhhHHHHHHHHHHc
Q 048090 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH--TGQVKLGIEYFEWMVHDYKLEP------GPEHYSCLVDLLCRA 346 (447)
Q Consensus 275 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~ 346 (447)
.|++++|..+++...... +-....|+.+.-++++ .++..+.++.|. .+-+++| +...|..++-.|...
T Consensus 220 ~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~ 295 (449)
T 1b89_A 220 RGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKY 295 (449)
T ss_dssp TTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999988654 4456666666666654 444555555443 3224455 477899999999999
Q ss_pred CCHHHHHHHH
Q 048090 347 GELDKAWKLI 356 (447)
Q Consensus 347 g~~~~A~~~~ 356 (447)
++++.|....
T Consensus 296 ~e~d~A~~tm 305 (449)
T 1b89_A 296 EEYDNAIITM 305 (449)
T ss_dssp TCHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 9999988754
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.87 E-value=4.8e-20 Score=166.58 Aligned_cols=236 Identities=12% Similarity=-0.017 Sum_probs=202.5
Q ss_pred cHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhH
Q 048090 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265 (447)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 265 (447)
+...+..+...+.+.|++++|...|+++++.. +.+..++..+..+|...|++++|...|+++... .+.+..+|
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~ 136 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD---PGDAEAWQFLGITQAENENEQAAIVALQRCLEL----QPNNLKAL 136 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCCHHHH
Confidence 44568888899999999999999999999973 457889999999999999999999999988775 55678899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChh
Q 048090 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD-----------EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334 (447)
Q Consensus 266 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 334 (447)
..+..+|...|++++|...++++.+. .|+ ...+..+...+...|++++|...++++.+...-.++..
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 214 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD 214 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHH
Confidence 99999999999999999999999874 333 22333457788999999999999999997632222688
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHH
Q 048090 335 HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYA 414 (447)
Q Consensus 335 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 414 (447)
++..+...|...|++++|...++++++.. |++..+|..++.+|...|++++|...++++++..|.+..++..++.+|.
T Consensus 215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 215 LQTGLGVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCI 292 (365)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999886 8889999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHc
Q 048090 415 KFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 415 ~~g~~~~A~~~~~~m~~~ 432 (447)
+.|++++|...++++.+.
T Consensus 293 ~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 293 NLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHTCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHh
Confidence 999999999999999873
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=4.1e-18 Score=160.08 Aligned_cols=368 Identities=13% Similarity=-0.003 Sum_probs=298.5
Q ss_pred HHHhhhhhhhhhc-ccccCCcchHHHhhccCC-CCCCccHHHHHHHHHh----CCChhhHHHHHHHHHhcCCCCchhhHH
Q 048090 17 IIFQSRLMLPYTT-CRHKKNLGTLTNCLKFLN-PRNPLPFNVVISDFCR----NGSPLYALKTFSFMHVHGIFLDTYALC 90 (447)
Q Consensus 17 ~~~~~~l~~~~~~-~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~ 90 (447)
+..+..|-..|.. .+..++.++|...|++.. ..++.++..|...|.. .+++++|.+.|++..+.| +...+.
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 115 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQ 115 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4555566666654 122457999999998753 3577788899999998 899999999999998875 556677
Q ss_pred HHHHHhcc----CCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHc----cCChhhHHHHhccCCC-CchhhHHHHHHH
Q 048090 91 SSLTASTS----VKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK----LLLIHDAELMFDEIPV-KNSVCANALLSG 161 (447)
Q Consensus 91 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~ 161 (447)
.+...+.. .+++++|...|++..+.| ++..+..+...|.. .++.++|.+.|++..+ .+...+..+...
T Consensus 116 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~ 192 (490)
T 2xm6_A 116 NLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYM 192 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777776 789999999999999876 56677778888887 7899999999987653 477888889998
Q ss_pred HHh----cCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhc----CCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHH
Q 048090 162 YCE----AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG----LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233 (447)
Q Consensus 162 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 233 (447)
|.. .+++++|.+.|++..+.| +...+..+...+.. .+++++|..+|++..+. + +...+..+...
T Consensus 193 y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~---~~~a~~~lg~~ 264 (490)
T 2xm6_A 193 YSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--G---NSIAQFRLGYI 264 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--T---CHHHHHHHHHH
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHH
Confidence 988 899999999999998865 45667777777765 78999999999998876 3 56677788888
Q ss_pred HHh----cCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048090 234 YGK----CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN-----GYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304 (447)
Q Consensus 234 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 304 (447)
|.. .+++++|...|++.... .+...+..+...|... +++++|...|++..+.| +...+..+.
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 335 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQ------GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLG 335 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTT------TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHH
Confidence 888 89999999999976442 3556777888888887 89999999999999865 445667777
Q ss_pred HHHhccC---cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCchHhHHHHHH
Q 048090 305 SACSHTG---QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR----AGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377 (447)
Q Consensus 305 ~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~ 377 (447)
..+...| ++++|..+|++..+. .+...+..|...|.. .+++++|...|++..+.+ +..++..|..
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~----~~~a~~~Lg~ 407 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG----LSAAQVQLGE 407 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHH
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHH
Confidence 7776655 899999999999764 367788889999998 899999999999999876 4667899999
Q ss_pred HHHh----cCCccHHHHHHHHHhhhCCC---chhHHHHHHHHHHh
Q 048090 378 ACHD----CGKFELGKLAAQKALELDPH---NVGIYVMLSNLYAK 415 (447)
Q Consensus 378 ~~~~----~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 415 (447)
.|.. .+++++|...|+++.+.+|+ ++.....+...+..
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9998 89999999999999999854 77777777665543
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=4.4e-18 Score=161.53 Aligned_cols=374 Identities=8% Similarity=-0.048 Sum_probs=276.1
Q ss_pred CCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHH
Q 048090 47 NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSA 126 (447)
Q Consensus 47 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 126 (447)
.|.|...|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+++.|..+|+++++.. |+...|..
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~ 84 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKC 84 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHH
Confidence 3557788999998 478999999999999999863 4466789999999999999999999999999863 67777877
Q ss_pred HHHHH-HccCChhhHHH----HhccCC------CCchhhHHHHHHHHHh---------cCCHHHHHHHHHhhhhcCCCCc
Q 048090 127 LIDLY-AKLLLIHDAEL----MFDEIP------VKNSVCANALLSGYCE---------AKLWAGGLELVRLMPALGLDYD 186 (447)
Q Consensus 127 l~~~~-~~~g~~~~a~~----~~~~~~------~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~ 186 (447)
.+... ...|+.+.|.+ +|++.. .++...|...+..... .|+++.|..+|++..+....+.
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 77533 45677777665 665432 2356678877776654 6899999999999987311111
Q ss_pred HhhHHHHHHH---H----------hcCCcHHHHHHHHHHHHHhhhc-------CCCC--------hhHHHHHHHHHHhc-
Q 048090 187 HFTLSALLRA---C----------AGLSAAEFGRQVHAYMIRKCCN-------LGND--------VFMQSSLIEMYGKC- 237 (447)
Q Consensus 187 ~~~~~~l~~~---~----------~~~~~~~~a~~~~~~~~~~~~~-------~~~~--------~~~~~~l~~~~~~~- 237 (447)
...|...... + ...+++..|..++........+ ++|+ ...|...+......
T Consensus 165 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~ 244 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP 244 (530)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCC
Confidence 2233322211 1 1345667777776664322111 2333 23455544333222
Q ss_pred ---CCh----HHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCC
Q 048090 238 ---GLV----TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR-------NGYFK-------EVIKLYEAMLMNGTKPD 296 (447)
Q Consensus 238 ---g~~----~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~m~~~~~~p~ 296 (447)
++. +.+..+|+++... .+.+...|...+..+.+ .|+++ +|..+|++..+.-.+-+
T Consensus 245 ~~~~~~~~~~~~a~~~y~~al~~----~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~ 320 (530)
T 2ooe_A 245 LRTEDQTLITKRVMFAYEQCLLV----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 320 (530)
T ss_dssp SCCSCSHHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC
T ss_pred ccCCcchhHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc
Confidence 232 3677788876664 55678889888888875 68887 89999999986312335
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-h-hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHH
Q 048090 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG-P-EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374 (447)
Q Consensus 297 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 374 (447)
...+..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|++..+.. |.....|..
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~~ 395 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVT 395 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHHH
Confidence 788889999999999999999999999864 564 3 589999999999999999999999999875 554444444
Q ss_pred HHHH-HHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 048090 375 LLSA-CHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433 (447)
Q Consensus 375 l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 433 (447)
.+.. +...|++++|..+|+++++..|+++.+|..++..+.+.|+.++|..+|++....+
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 3333 3468999999999999999999999999999999999999999999999999863
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.86 E-value=1.7e-18 Score=150.32 Aligned_cols=271 Identities=10% Similarity=-0.025 Sum_probs=218.4
Q ss_pred HHHHccCChhhHHHHhccCCCCc----hhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHH
Q 048090 129 DLYAKLLLIHDAELMFDEIPVKN----SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204 (447)
Q Consensus 129 ~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 204 (447)
+-....|++..|+..++.....+ ......+.++|...|+++.|+..++.. -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 34456789999999888766433 234566788999999999999876552 3667788888889999999999
Q ss_pred HHHHHHHHHHHhhhcC-CCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHH
Q 048090 205 FGRQVHAYMIRKCCNL-GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283 (447)
Q Consensus 205 ~a~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 283 (447)
+|.+.++++... +. +.+...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|..
T Consensus 83 ~A~~~l~~ll~~--~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---------~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 83 AIVAELDREMSR--SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---------GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp HHHHHHHHHHHS--CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhc--ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999876 33 33566778888999999999999999983 5677889999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHH---HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048090 284 LYEAMLMNGTKPDEVAF---VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360 (447)
Q Consensus 284 ~~~~m~~~~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 360 (447)
.++++.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++++
T Consensus 152 ~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 152 ELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999998864 543211 22334445669999999999999876 35678899999999999999999999999999
Q ss_pred hCCCCCCchHhHHHHHHHHHhcCCccH-HHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHH
Q 048090 361 DRGHGSSSVSMWGALLSACHDCGKFEL-GKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQ 424 (447)
Q Consensus 361 ~~~~~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 424 (447)
... |++..++..++..+...|+.++ +.++++++++.+|+++.+.. ...+.+.++++..
T Consensus 228 ~~~--p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 228 DKD--SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVL 286 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHH
T ss_pred HhC--CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHH
Confidence 887 9999999999999999999976 67899999999999986554 3445555555543
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=3e-18 Score=160.48 Aligned_cols=365 Identities=12% Similarity=-0.039 Sum_probs=249.2
Q ss_pred CCccHHHHHHHHHhCCChhhHHHHHHHHHhc-----C--CCC-chhhHHHHHHHhccCCchhHHHHHHHHHHHcC-----
Q 048090 50 NPLPFNVVISDFCRNGSPLYALKTFSFMHVH-----G--IFL-DTYALCSSLTASTSVKDARFGKQVQAHVTKSG----- 116 (447)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----- 116 (447)
....||.|...+...|++++|++.|++..+. + ..| ...+|+.+..++...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456999999999999999999999987542 1 122 34678899999999999999999999887531
Q ss_pred -C-CCchhhHHHHHHHHHcc--CChhhHHHHhccCC--CC-chhhHHHHHHH---HHhcCCHHHHHHHHHhhhhcCCCCc
Q 048090 117 -W-LSSVFVGSALIDLYAKL--LLIHDAELMFDEIP--VK-NSVCANALLSG---YCEAKLWAGGLELVRLMPALGLDYD 186 (447)
Q Consensus 117 -~-~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~--~~-~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~ 186 (447)
. .....++..+..++... +++++|+..|++.. .| ++..+..+..+ +...++.++|++.+++..+.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 1 11234555555555544 56899999998865 33 45555555554 345577788999998887764 335
Q ss_pred HhhHHHHHHHHh----cCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcch
Q 048090 187 HFTLSALLRACA----GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262 (447)
Q Consensus 187 ~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 262 (447)
...+..+...+. ..+++++|.+.+++.... .+.+..++..+...|...|++++|...|+++... .|.+.
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~~ 281 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK---APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY----IPNNA 281 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh---CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh----CCChH
Confidence 555655554443 346788999999999887 3457788899999999999999999999987765 45566
Q ss_pred hhHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 048090 263 VLWTSMLGVYGRN-------------------GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323 (447)
Q Consensus 263 ~~~~~l~~~~~~~-------------------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 323 (447)
.++..+..+|... +..+.|...+++..+.. +.+..++..+...+...|++++|...|++.
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 7777776665432 23567778888877653 234567788888999999999999999998
Q ss_pred HHhcCCCCChh----hHHHHHH-HHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhh
Q 048090 324 VHDYKLEPGPE----HYSCLVD-LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398 (447)
Q Consensus 324 ~~~~~~~~~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 398 (447)
... .|+.. .+..+.. .+...|++++|+..|++.++.. |.+.. .. +....+..++++.++.
T Consensus 361 L~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~-~~---------~~~~~l~~~~~~~l~~ 425 (472)
T 4g1t_A 361 FSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSRE-KE---------KMKDKLQKIAKMRLSK 425 (472)
T ss_dssp HHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHH-HH---------HHHHHHHHHHHHHHHH
T ss_pred Hhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHH-HH---------HHHHHHHHHHHHHHHh
Confidence 864 33322 2333332 2346789999999999998876 65543 22 2233456778888889
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCC
Q 048090 399 DPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG-LKKDV 438 (447)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~ 438 (447)
+|.++.+|..++.+|...|++++|++.|++..+.+ ..|++
T Consensus 426 ~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 426 NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp CC-CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 99999999999999999999999999999998854 34443
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=5.5e-19 Score=153.47 Aligned_cols=251 Identities=10% Similarity=0.063 Sum_probs=207.5
Q ss_pred HHHHHhcCCHHHHHHHHHhhhhcCCCCcH--hhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHh
Q 048090 159 LSGYCEAKLWAGGLELVRLMPALGLDYDH--FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236 (447)
Q Consensus 159 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 236 (447)
++-....|++..|+..+++.... .|+. .....+.+++...|+++.|...++. ..+|+..++..+...+..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~------~~~~~~~a~~~la~~~~~ 77 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP------SSAPELQAVRMFAEYLAS 77 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT------TSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc------cCChhHHHHHHHHHHHcC
Confidence 34556789999999999887654 3443 3556678899999999999986643 235677888999999999
Q ss_pred cCChHHHHHHHHhhhhhcccCC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH
Q 048090 237 CGLVTKALQVFNLAGHRLEGEI-NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315 (447)
Q Consensus 237 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 315 (447)
.++.++|.+.++++... +. |.+...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++
T Consensus 78 ~~~~~~A~~~l~~ll~~---~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~ 148 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSR---SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDL 148 (291)
T ss_dssp STTHHHHHHHHHHHHHS---CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHHHHHhc---ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999965432 22 44566778888999999999999999987 4577889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHH
Q 048090 316 GIEYFEWMVHDYKLEPGPEHY---SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAA 392 (447)
Q Consensus 316 a~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 392 (447)
|.+.|+++.+. .|+.... ..++..+...|++++|..+|+++.+.. |++..+++.++.++...|++++|...+
T Consensus 149 A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l 223 (291)
T 3mkr_A 149 ARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEGVL 223 (291)
T ss_dssp HHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999876 4653211 223344445689999999999999986 889999999999999999999999999
Q ss_pred HHHhhhCCCchhHHHHHHHHHHhcCChHH-HHHHHHHHHH
Q 048090 393 QKALELDPHNVGIYVMLSNLYAKFCMWDE-IGQLRELMKE 431 (447)
Q Consensus 393 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~ 431 (447)
+++++.+|.++.++..++.++...|+.++ +.++++++.+
T Consensus 224 ~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 224 QEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999976 5788998876
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=3.4e-18 Score=160.11 Aligned_cols=368 Identities=9% Similarity=-0.038 Sum_probs=246.0
Q ss_pred HHHhhhhhhhhhcccccCCcchHHHhhccC------------CCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhc----
Q 048090 17 IIFQSRLMLPYTTCRHKKNLGTLTNCLKFL------------NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH---- 80 (447)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---- 80 (447)
..+||.|-..|.+.| +.++|++.|++. .+....+|+.+..+|...|++++|...+++..+.
T Consensus 51 a~~yn~Lg~~~~~~G---~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKG---QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp CHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 467888888888887 599998888753 1223467999999999999999999999988652
Q ss_pred -C-CCC-chhhHHHHHHHhc--cCCchhHHHHHHHHHHHcCCCCchhhHHHHHHH---HHccCChhhHHHHhccCC---C
Q 048090 81 -G-IFL-DTYALCSSLTAST--SVKDARFGKQVQAHVTKSGWLSSVFVGSALIDL---YAKLLLIHDAELMFDEIP---V 149 (447)
Q Consensus 81 -~-~~p-~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~---~ 149 (447)
+ ..+ ...++.....++. ..+++++|...|++.++.. |.++..+..+..+ +...++.++|++.+++.. +
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 1 111 2345555544443 3468999999999999864 3345555555444 345677788888887654 3
Q ss_pred CchhhHHHHHHHHHh----cCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChh
Q 048090 150 KNSVCANALLSGYCE----AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225 (447)
Q Consensus 150 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 225 (447)
.+...+..+...+.. .+++++|.+.+++..... +.+...+..+...+...|++++|...+++..+.. +.+..
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~ 282 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI---PNNAY 282 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC---CChHH
Confidence 456666666555544 467889999999988764 4567788889999999999999999999999873 34667
Q ss_pred HHHHHHHHHHhc-------------------CChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHH
Q 048090 226 MQSSLIEMYGKC-------------------GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286 (447)
Q Consensus 226 ~~~~l~~~~~~~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 286 (447)
++..+..+|... +.++.|...|+++... .+.+..++..+...+...|++++|+..|+
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 358 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA----NDNLFRVCSILASLHALADQYEEAEYYFQ 358 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH----CTTTCCCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc----CCchhhhhhhHHHHHHHhccHHHHHHHHH
Confidence 777777666432 2356777888766554 55667789999999999999999999999
Q ss_pred HHHhCCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048090 287 AMLMNGTKPDEV--AFVTVIS-ACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRG 363 (447)
Q Consensus 287 ~m~~~~~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 363 (447)
+..+....|... .+..+.. .....|++++|+..|++..+ +.|+...... ....+..++++.+..+
T Consensus 359 kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~---------~~~~l~~~~~~~l~~~ 426 (472)
T 4g1t_A 359 KEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEK---------MKDKLQKIAKMRLSKN 426 (472)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHH---------HHHHHHHHHHHHHHHC
T ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHH---------HHHHHHHHHHHHHHhC
Confidence 998865443321 2223322 23578999999999999885 4665433222 2344566677777766
Q ss_pred CCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHH
Q 048090 364 HGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410 (447)
Q Consensus 364 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 410 (447)
|++..+|..++.+|...|++++|...|+++++.+|.++.+..-++
T Consensus 427 --p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 427 --GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp --C-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 889999999999999999999999999999999988777665443
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=8e-19 Score=155.86 Aligned_cols=235 Identities=10% Similarity=-0.031 Sum_probs=158.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHH-
Q 048090 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL- 230 (447)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l- 230 (447)
...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++.+.+..+. +...+..+
T Consensus 55 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~ 130 (327)
T 3cv0_A 55 EEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ---YEQLGSVNL 130 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT---TTTC-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---cHHHHHHHh
Confidence 3344444455555555555555555554432 223444555555555555555555555555554211 12222221
Q ss_pred -------------HH-HHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 048090 231 -------------IE-MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296 (447)
Q Consensus 231 -------------~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 296 (447)
.. .+...|++++|...++++... .+.+...+..+...+...|++++|...++++.+.. +.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~ 205 (327)
T 3cv0_A 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM----NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDD 205 (327)
T ss_dssp ---------------CCTTSHHHHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCc
Confidence 22 366777888888888876554 44567778888888888888888888888887753 335
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---------
Q 048090 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS--------- 367 (447)
Q Consensus 297 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------- 367 (447)
..++..+...+...|++++|...++++.+. .+.+...+..+..++...|++++|...++++.... |.
T Consensus 206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~ 281 (327)
T 3cv0_A 206 AQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ--VGGTTPTGEAS 281 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTSCC-----C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--Cccccccccch
Confidence 677888888888888999999988888765 13357778888888999999999999998887765 65
Q ss_pred ---chHhHHHHHHHHHhcCCccHHHHHHHHHhhhC
Q 048090 368 ---SVSMWGALLSACHDCGKFELGKLAAQKALELD 399 (447)
Q Consensus 368 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 399 (447)
+..++..+..++...|++++|..+++++++..
T Consensus 282 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 282 REATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp CTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred hhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 57778889999999999999988888766543
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=7.8e-20 Score=162.22 Aligned_cols=282 Identities=10% Similarity=0.066 Sum_probs=122.5
Q ss_pred cCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHh
Q 048090 98 SVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177 (447)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 177 (447)
+.|++++|.++++++ +++.+|..+..++.+.|++++|++.|.+. +|..+|..++..+...|++++|++.++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 456677777777776 22347788888888888888888888653 5666788888888888888888887666
Q ss_pred hhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccC
Q 048090 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257 (447)
Q Consensus 178 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 257 (447)
..+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|..+|..+
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp ------------------------CHHHHTTTTT---------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 6653 4556677788888888888888777764 245568888888888888888888888733
Q ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHH
Q 048090 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS 337 (447)
Q Consensus 258 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 337 (447)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +...+....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~ 211 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELE 211 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHH
Confidence 36888888888888888888888877 2677888888888888888888544332 223334455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhc--CCccHHHHHHHHHhhhCC-----CchhHHHHHH
Q 048090 338 CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC--GKFELGKLAAQKALELDP-----HNVGIYVMLS 410 (447)
Q Consensus 338 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~ 410 (447)
.++..|.+.|++++|..+++..+... +....+|.-|..+|++- ++..+..+.|...+...| .+...|..+.
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 67788888888888888888887665 66777777777777664 344444444443333334 4677788888
Q ss_pred HHHHhcCChHHHHH
Q 048090 411 NLYAKFCMWDEIGQ 424 (447)
Q Consensus 411 ~~~~~~g~~~~A~~ 424 (447)
-.|...++++.|..
T Consensus 290 ~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 290 FLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHTTCHHHHHH
T ss_pred HHHHhhchHHHHHH
Confidence 88888888888754
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.8e-17 Score=141.76 Aligned_cols=228 Identities=11% Similarity=0.012 Sum_probs=112.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCC----hhHHH
Q 048090 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND----VFMQS 228 (447)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ 228 (447)
..+..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...++.+.+..+...++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345556666666666666666666666554 455556666666666666666666666666654332222 34455
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 048090 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308 (447)
Q Consensus 229 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 308 (447)
.+...+...|++++|...|+++... .|+ ...+...|++++|...++++.... +.+...+..+...+.
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE-----HRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----CCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc-----Cch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHH
Confidence 5555555555555555555544332 122 122333444455555555544421 112333444444444
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHH
Q 048090 309 HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388 (447)
Q Consensus 309 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 388 (447)
..|++++|...++++.+. .+.+...+..+..++...|++++|...++++++.. |++..++..++.++...|++++|
T Consensus 151 ~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhHHHH
Confidence 444444444444444432 12224444444444444444444444444444443 44444444444444444444444
Q ss_pred HHHHHHHhhhC
Q 048090 389 KLAAQKALELD 399 (447)
Q Consensus 389 ~~~~~~~~~~~ 399 (447)
...++++++..
T Consensus 227 ~~~~~~a~~~~ 237 (258)
T 3uq3_A 227 LETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 44444444444
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.6e-17 Score=140.77 Aligned_cols=227 Identities=14% Similarity=0.051 Sum_probs=199.4
Q ss_pred HhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcc----h
Q 048090 187 HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD----V 262 (447)
Q Consensus 187 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~ 262 (447)
...+..+...+...|++++|...++++.+. . .+...+..+..++...|++++|...++++....... .++ .
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~ 79 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL--H--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-RADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-ccchHHHH
Confidence 456778888999999999999999999998 3 678899999999999999999999999876652211 111 5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHH
Q 048090 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVD 341 (447)
Q Consensus 263 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~ 341 (447)
.++..+..++...|++++|...|++..+. .|+. ..+...|++++|...++++... .| +...+..+..
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~ 147 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV---NPEKAEEARLEGK 147 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc---CcchHHHHHHHHH
Confidence 78899999999999999999999999985 4553 3456678999999999999853 44 4778889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHH
Q 048090 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421 (447)
Q Consensus 342 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 421 (447)
.+...|++++|...++++.... |.+..++..++.++...|++++|...++++++..|.++.++..++.+|...|++++
T Consensus 148 ~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 148 EYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999999887 88889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc
Q 048090 422 IGQLRELMKEK 432 (447)
Q Consensus 422 A~~~~~~m~~~ 432 (447)
|.+.+++..+.
T Consensus 226 A~~~~~~a~~~ 236 (258)
T 3uq3_A 226 ALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.80 E-value=1.5e-17 Score=138.03 Aligned_cols=199 Identities=14% Similarity=0.039 Sum_probs=159.9
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048090 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300 (447)
Q Consensus 221 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 300 (447)
+++...+..+...+.+.|++++|...|+++... .|.+...+..+..++.+.|++++|+..+++..+.. +.+...+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~ 76 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE----NPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGY 76 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 456777888888888999999999999877664 56677888888889999999999999999988854 2256778
Q ss_pred HHHHHHHhcc-----------CcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc
Q 048090 301 VTVISACSHT-----------GQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSS 368 (447)
Q Consensus 301 ~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 368 (447)
..+..++... |++++|...|++..+. .| +...+..+..++...|++++|+..|+++++.+ ++
T Consensus 77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~ 150 (217)
T 2pl2_A 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE---DT 150 (217)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CC
T ss_pred HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cc
Confidence 8888888888 9999999999999865 55 47888999999999999999999999999887 47
Q ss_pred hHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048090 369 VSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMK 430 (447)
Q Consensus 369 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 430 (447)
..++..++.++...|++++|...++++++..|.++.++..++.++.+.|++++|++.+++..
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 77899999999999999999999999999999999999999999999999999999988764
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=1e-15 Score=151.57 Aligned_cols=358 Identities=10% Similarity=0.033 Sum_probs=203.7
Q ss_pred hHHHhhhhhhhhhcccccCCcchHHHhhccCC-CCC-----CccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhH
Q 048090 16 LIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLN-PRN-----PLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYAL 89 (447)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~-~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 89 (447)
|+.--+..+.+|...| +..+|+.+++++. .|+ ...-+.|+.+..+. +..+..+..++.... + .
T Consensus 984 ~PeeVs~~vKaf~~ag---lp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~ 1052 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTAD---LPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---A 1052 (1630)
T ss_pred CHHHhHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---H
Confidence 3444466677777555 5888888888764 222 23344455444443 333333333333211 0 1
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHHcC---------------------CCCchhhHHHHHHHHHccCChhhHHHHhccCC
Q 048090 90 CSSLTASTSVKDARFGKQVQAHVTKSG---------------------WLSSVFVGSALIDLYAKLLLIHDAELMFDEIP 148 (447)
Q Consensus 90 ~~ll~~~~~~~~~~~a~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 148 (447)
..+...+...|.+++|..+|++..... -.-++.+|..+..++...|++++|+..|.+.
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 113333444444444444444321000 0023445555556666666666666665443
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHH
Q 048090 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228 (447)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 228 (447)
.|...|..++..+.+.|++++|.+.|....+.. +++...+.++.+|++.++++....+ ++ .++...+.
T Consensus 1132 -dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~-----~~n~ad~~ 1199 (1630)
T 1xi4_A 1132 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN-----GPNNAHIQ 1199 (1630)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh-----CCCHHHHH
Confidence 344555556666666666666666665544432 2222222355555555555532222 11 12334445
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 048090 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308 (447)
Q Consensus 229 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 308 (447)
.+...|...|++++|..+|..+ ..|..+..+|++.|++++|.+.+++. .+..+|..+-.+|.
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA------------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 1261 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh------------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHh
Confidence 5666666666666666666521 35666666666666666666666654 23456666666666
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhc--CCcc
Q 048090 309 HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC--GKFE 386 (447)
Q Consensus 309 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~ 386 (447)
..|++..|...... +..+...+..++..|.+.|.+++|+.+++..+..+ |.....|.-|...+.+. ++..
T Consensus 1262 e~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le--raH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred hhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--hhHhHHHHHHHHHHHhCCHHHHH
Confidence 66666666654432 23455667788888999999999999998887665 66777777777766653 4556
Q ss_pred HHHHHHHHHhhhCC-----CchhHHHHHHHHHHhcCChHHHH
Q 048090 387 LGKLAAQKALELDP-----HNVGIYVMLSNLYAKFCMWDEIG 423 (447)
Q Consensus 387 ~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~ 423 (447)
++.+.|..-....| .+...|..+...|.+.|+++.|.
T Consensus 1334 Ehlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1334 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 66666665554444 46778999999999999999887
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=9e-20 Score=174.62 Aligned_cols=156 Identities=13% Similarity=0.107 Sum_probs=126.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048090 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301 (447)
Q Consensus 222 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 301 (447)
....+|+++|++|++.|++++|.++|++|..+...|..||+.|||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 34568999999999999999999999988777677899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCcH-HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----chHhHHHH
Q 048090 302 TVISACSHTGQV-KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS-----SVSMWGAL 375 (447)
Q Consensus 302 ~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~~l 375 (447)
++|.++++.|+. +.|.++|++|... |+.||..+|+.++....+. .+++.++++ ..++.|+ ...+...|
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 999999999984 7889999999888 9999999999988766555 344444444 3344442 23334455
Q ss_pred HHHHHhcC
Q 048090 376 LSACHDCG 383 (447)
Q Consensus 376 ~~~~~~~g 383 (447)
...|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 66666555
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.76 E-value=9e-17 Score=138.82 Aligned_cols=248 Identities=8% Similarity=-0.118 Sum_probs=195.7
Q ss_pred hcCCHHHHHHHHHhhhhcCCC---CcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCCh
Q 048090 164 EAKLWAGGLELVRLMPALGLD---YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240 (447)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (447)
..|++++|+..++++.+.... .+..++..+...+...|++++|...++++.+. .+.+..++..+..+|...|++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI---RPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHccCH
Confidence 457899999999998876321 24567888888899999999999999999987 344788899999999999999
Q ss_pred HHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048090 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320 (447)
Q Consensus 241 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 320 (447)
++|...|+++... .+.+..++..+..+|.+.|++++|...++++.+. .|+.......+..+...|++++|...+
T Consensus 94 ~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 94 DAAYEAFDSVLEL----DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp HHHHHHHHHHHHH----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHhc----CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999987775 4556788999999999999999999999999885 454444445555667779999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCchHhHHHHHHHHHhcCCccHHHHHHHHHhhh
Q 048090 321 EWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHG--SSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398 (447)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 398 (447)
++.... .+++...+ .++..+...++.++|...++++...... |.+..++..++.++...|++++|...++++++.
T Consensus 168 ~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 168 KQHFEK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 888765 23444444 4677788888899999999998766410 122567899999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHH
Q 048090 399 DPHNVGIYVMLSNLYAKFCMWDEIGQLR 426 (447)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 426 (447)
.|.+...+ ..++...|++++|++.+
T Consensus 245 ~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 NVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp CCTTCHHH---HHHHHHHHHHHHC----
T ss_pred CchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 98776544 55778889999988766
No 39
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=6.4e-15 Score=145.98 Aligned_cols=352 Identities=13% Similarity=0.112 Sum_probs=204.4
Q ss_pred hhhHHHhhhhhhhhhcccc-cCCcchHHHhhccCCCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCC--CCchhhHH
Q 048090 14 ICLIIFQSRLMLPYTTCRH-KKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI--FLDTYALC 90 (447)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~ 90 (447)
..|+.+|+.++.-=-..++ .=++..|..+=+ ..+|.--...+++|...|.+.+|+++|++....+- .-+...-+
T Consensus 950 r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e---~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lqn 1026 (1630)
T 1xi4_A 950 RKDPELWGSVLLESNPYRRPLIDQVVQTALSE---TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQN 1026 (1630)
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHhhccc---ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHH
Confidence 3567899988843221111 012222333222 23455556788999999999999999999984421 11234445
Q ss_pred HHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHH
Q 048090 91 SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170 (447)
Q Consensus 91 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 170 (447)
.++....+. +..+..++....... + ...+...+...|.+++|..+|++.... ....+.++. ..+++++
T Consensus 1027 lLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~~~-~~A~~VLie---~i~nldr 1094 (1630)
T 1xi4_A 1027 LLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFDVN-TSAVQVLIE---HIGNLDR 1094 (1630)
T ss_pred HHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcCCH-HHHHHHHHH---HHhhHHH
Confidence 566655555 556666666655421 1 233667777888888888888886421 111222222 5566777
Q ss_pred HHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhh
Q 048090 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLA 250 (447)
Q Consensus 171 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 250 (447)
|.++.++.. ++.+|..+..++.+.|++++|.+.|.+. .+...|..++.++.+.|++++|.+++...
T Consensus 1095 AiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA--------dD~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1095 AYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred HHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777766542 3456667777777777777777776432 25556666777777777777777777654
Q ss_pred hhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCC
Q 048090 251 GHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330 (447)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 330 (447)
... .++....+.++.+|++.+++++...+. . .|+...|..+...|...|++++|..+|..+
T Consensus 1161 rk~-----~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------- 1221 (1630)
T 1xi4_A 1161 RKK-----ARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 1221 (1630)
T ss_pred Hhh-----cccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------
Confidence 432 122222334666666666666433332 1 334455556666666777777777776664
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----------------------CCCchHhHHHHHHHHHhcCCccH
Q 048090 331 PGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH-----------------------GSSSVSMWGALLSACHDCGKFEL 387 (447)
Q Consensus 331 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------------------~p~~~~~~~~l~~~~~~~g~~~~ 387 (447)
..|..+..+|.+.|++++|.+.+++...... ...++..+..++..|.+.|.+++
T Consensus 1222 ---~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feE 1298 (1630)
T 1xi4_A 1222 ---SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEE 1298 (1630)
T ss_pred ---hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHH
Confidence 1466666666666667666666665522110 00122224455666666666666
Q ss_pred HHHHHHHHhhhCCCchhHHHHHHHHHHhc
Q 048090 388 GKLAAQKALELDPHNVGIYVMLSNLYAKF 416 (447)
Q Consensus 388 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 416 (447)
|..+++.++.+++....+|.-|+.+|.+.
T Consensus 1299 AI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1299 LITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 66666666666666666666666655543
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.76 E-value=2.8e-16 Score=135.54 Aligned_cols=251 Identities=12% Similarity=-0.002 Sum_probs=133.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHH
Q 048090 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234 (447)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 234 (447)
+......+...|++++|+..+++..+.. +.+...+..+..++...|++++|...++.+.+...........+..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3444555556666666666666665542 223335555555666666666666666666553101111122355566666
Q ss_pred HhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH
Q 048090 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314 (447)
Q Consensus 235 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 314 (447)
...|++++|...|+++... .+.+..++..+...|...|++++|...+++..+.. +.+...+..+...+...++++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDR----DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHH----STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHcccHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 6666666666666655443 33344556666666666666666666666655542 223444444442233334666
Q ss_pred HHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCC-CC-----chHhHHHHHHHHHhcCC
Q 048090 315 LGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGE---LDKAWKLINEMLDRGHG-SS-----SVSMWGALLSACHDCGK 384 (447)
Q Consensus 315 ~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-p~-----~~~~~~~l~~~~~~~g~ 384 (447)
+|...|+++.+. .| +...+..+..++...|+ +++|...++++.+.... |+ ...+|..++..|...|+
T Consensus 160 ~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 160 KADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 666666666543 23 24555555555655555 55566666555433110 11 11345666666666666
Q ss_pred ccHHHHHHHHHhhhCCCchhHHHHHHHHHH
Q 048090 385 FELGKLAAQKALELDPHNVGIYVMLSNLYA 414 (447)
Q Consensus 385 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 414 (447)
+++|...++++++.+|.++.++..+.....
T Consensus 237 ~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 237 KVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 666666666666666666666655554433
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.76 E-value=2.9e-16 Score=131.12 Aligned_cols=201 Identities=9% Similarity=-0.047 Sum_probs=148.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 048090 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302 (447)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 302 (447)
+...+..+...+...|++++|...|+++... .+.+...+..+..++...|++++|...++++.+.. +.+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 81 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS----DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNN 81 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh----CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHH
Confidence 4556667777777777777777777766554 34456677777777777788888888777777653 235667777
Q ss_pred HHHHHhcc-CcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHH
Q 048090 303 VISACSHT-GQVKLGIEYFEWMVHDYKLEPG-PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380 (447)
Q Consensus 303 ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 380 (447)
+...+... |++++|...++++.+. +..|+ ...+..+..++...|++++|...++++.+.. |.+..++..++.++.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~ 158 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKM 158 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHH
Confidence 77777777 8888888888877752 23343 5667777777888888888888888877765 667777888888888
Q ss_pred hcCCccHHHHHHHHHhhhCC-CchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 381 DCGKFELGKLAAQKALELDP-HNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 381 ~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
..|++++|...++++++..| .+...+..+...+...|+.++|..+++.+.+
T Consensus 159 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 88888888888888888877 7777777777777888888888888877765
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.75 E-value=4.1e-16 Score=132.83 Aligned_cols=200 Identities=11% Similarity=-0.066 Sum_probs=133.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048090 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTV 303 (447)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 303 (447)
...+..+...+...|++++|...|+++... .+.+...+..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 111 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI----DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNY 111 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHH
Confidence 345566666666667777777777655443 34455666666667777777777777777766643 2245566666
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhc
Q 048090 304 ISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382 (447)
Q Consensus 304 l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 382 (447)
...+...|++++|..+++++... +..| +...+..+...+...|++++|...++++.+.. |.+..++..++..+...
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKE 188 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHc
Confidence 66677777777777777766541 2334 35556666667777777777777777776655 66666677777777777
Q ss_pred CCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 383 GKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 383 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
|++++|...++++++..|.+...+..++..+...|++++|.+.++++.+
T Consensus 189 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp TCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777777765
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.75 E-value=2.2e-16 Score=133.62 Aligned_cols=213 Identities=15% Similarity=0.114 Sum_probs=120.3
Q ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHH
Q 048090 188 FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267 (447)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 267 (447)
..+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...|+++... .+.+...+..
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~ 96 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEE---NKEDAIPYINFANLLSSVNELERALAFYDKALEL----DSSAATAYYG 96 (243)
T ss_dssp ------------------CCTTHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCcchHHHHH
Confidence 34445555555666666666666666554 2234555666666666666666666666655443 3334555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcC
Q 048090 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347 (447)
Q Consensus 268 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 347 (447)
+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEG 173 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcC
Confidence 6666666666666666666666543 224555666666666666666666666666543 1234556666666666777
Q ss_pred CHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHH
Q 048090 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNL 412 (447)
Q Consensus 348 ~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 412 (447)
++++|...++++.... |.+..++..++.++...|++++|...++++++..|.+..++..+...
T Consensus 174 ~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp CCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 7777777777666654 55666666677777777777777777777777776666666555443
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.75 E-value=3.3e-16 Score=140.54 Aligned_cols=239 Identities=10% Similarity=0.062 Sum_probs=155.9
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCC-hHHHHHHHHhhhhhcccCCCcchhhHHH
Q 048090 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL-VTKALQVFNLAGHRLEGEINKDVVLWTS 267 (447)
Q Consensus 189 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 267 (447)
.|..+...+.+.|++++|...++++++.. +.+..+|..+..++...|+ +++|+..|+++... .+.+...|..
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~---P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l----~P~~~~a~~~ 171 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN---AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----QPKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----CTTCHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH----CCCCHHHHHH
Confidence 45555555566666666666666666652 2355666666666666665 77777666665554 4445666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHH-
Q 048090 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCR- 345 (447)
Q Consensus 268 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~- 345 (447)
+..++...|++++|+..|+++++... -+...|..+..++...|++++|+..++++++. .| +...|+.+..++.+
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHh
Confidence 77777777777777777777766432 25566666666777777777777777777654 33 46666777777766
Q ss_pred cCCHHHH-----HHHHHHHHhCCCCCCchHhHHHHHHHHHhcC--CccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcC-
Q 048090 346 AGELDKA-----WKLINEMLDRGHGSSSVSMWGALLSACHDCG--KFELGKLAAQKALELDPHNVGIYVMLSNLYAKFC- 417 (447)
Q Consensus 346 ~g~~~~A-----~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 417 (447)
.|..++| +..+++.+... |++..+|..+..++...| ++++|...++++ +.+|++..++..++.+|.+.|
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhc
Confidence 4444666 46677777665 777777777777777766 577777777776 666777777777777777763
Q ss_pred --------ChHHHHHHHHHH-HHcCCCCCCccccc
Q 048090 418 --------MWDEIGQLRELM-KEKGLKKDVGCSWI 443 (447)
Q Consensus 418 --------~~~~A~~~~~~m-~~~~~~p~~~~~~~ 443 (447)
.+++|+++++++ .+ +.|+...+|.
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~ 357 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKE--KDTIRKEYWR 357 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHH--hCchhHHHHH
Confidence 246777777776 33 5565555554
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.74 E-value=9e-16 Score=132.33 Aligned_cols=239 Identities=12% Similarity=-0.030 Sum_probs=196.9
Q ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHH
Q 048090 188 FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267 (447)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 267 (447)
..+......+...|++++|...++++.+.. +.+...+..+..+|...|++++|...++++... .........+|..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK---YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEY 79 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT---CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHH
Confidence 445667778889999999999999999873 345668889999999999999999999977652 1111222345889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHc
Q 048090 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRA 346 (447)
Q Consensus 268 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 346 (447)
+..++...|++++|...|++..+.. +.+..++..+...+...|++++|...|++..+. .| +...+..+...+...
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP---TTTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---SCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---CCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999864 235678999999999999999999999999743 45 467777777345556
Q ss_pred CCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCC---ccHHHHHHHHHhhhC---CCc-----hhHHHHHHHHHHh
Q 048090 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK---FELGKLAAQKALELD---PHN-----VGIYVMLSNLYAK 415 (447)
Q Consensus 347 g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---~~~-----~~~~~~l~~~~~~ 415 (447)
+++++|...++++++.. |++...+..++.++...|+ +++|...++++++.. |+. ..+|..++..|..
T Consensus 156 ~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 156 KEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 69999999999999887 8888889999999999998 999999999999875 432 2688899999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCC
Q 048090 416 FCMWDEIGQLRELMKEKGLKKDV 438 (447)
Q Consensus 416 ~g~~~~A~~~~~~m~~~~~~p~~ 438 (447)
.|++++|.+.+++..+ +.|+.
T Consensus 234 ~~~~~~A~~~~~~al~--~~p~~ 254 (272)
T 3u4t_A 234 NRDKVKADAAWKNILA--LDPTN 254 (272)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTC
T ss_pred cCCHHHHHHHHHHHHh--cCccH
Confidence 9999999999999987 34554
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.74 E-value=2.4e-15 Score=128.06 Aligned_cols=211 Identities=10% Similarity=-0.012 Sum_probs=165.3
Q ss_pred HhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHH
Q 048090 187 HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266 (447)
Q Consensus 187 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 266 (447)
...+..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|.+.|+++... .+.+...+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~ 109 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI---DPSSADAHAALAVVFQTEMEPKLADEEYRKALAS----DSRNARVLN 109 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CcCcHHHHH
Confidence 345666667777778888888888887776 2335677777888888888888888888876554 344667778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH
Q 048090 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKP-DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345 (447)
Q Consensus 267 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 345 (447)
.+...+...|++++|...++++.+.+..| +...+..+...+...|++++|...++++.+. .+.+...+..+...+..
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYK 187 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHH
Confidence 88888888888888888888887733344 4567777888888889999999999888765 13357788888889999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHH
Q 048090 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408 (447)
Q Consensus 346 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 408 (447)
.|++++|...++++.+.. |++...+..+...+...|++++|...++++.+..|.++.....
T Consensus 188 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp TTCHHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999988765 7788888889999999999999999999999999888766543
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.74 E-value=8.2e-16 Score=137.96 Aligned_cols=250 Identities=10% Similarity=0.016 Sum_probs=214.1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCc-HHHHHHHHHHHHHhhhcCCCChhHHHH
Q 048090 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA-AEFGRQVHAYMIRKCCNLGNDVFMQSS 229 (447)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~ 229 (447)
+...|+.+...+...|++++|++.+++..+.. +-+...|..+..++...|+ +++|...++++++.. +.+...|..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~---P~~~~a~~~ 171 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ---PKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC---CCCHHHHHH
Confidence 45678888899999999999999999998874 4467788889999999996 999999999999983 347889999
Q ss_pred HHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 048090 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309 (447)
Q Consensus 230 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 309 (447)
+..++...|++++|+..|+++... .+.+...|..+..++.+.|++++|+..++++++.... +...|+.+..++..
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~l----dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQ----DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh----CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 999999999999999999988776 6778899999999999999999999999999996533 67888888888888
Q ss_pred -cCcHHHH-----HHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHH
Q 048090 310 -TGQVKLG-----IEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAG--ELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380 (447)
Q Consensus 310 -~~~~~~a-----~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 380 (447)
.|..++| +..+++.+.. .| +...|..+..++...| ++++|++.+.++ +. .|++..++..++.+|.
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~--~p~~~~al~~La~~~~ 320 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP--SHSSPYLIAFLVDIYE 320 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT--TCCCHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc--CCCCHHHHHHHHHHHH
Confidence 6665777 5888888865 55 4778888888888888 689999999988 44 3888889999999999
Q ss_pred hcC---------CccHHHHHHHHH-hhhCCCchhHHHHHHHHHHh
Q 048090 381 DCG---------KFELGKLAAQKA-LELDPHNVGIYVMLSNLYAK 415 (447)
Q Consensus 381 ~~g---------~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 415 (447)
+.| .+++|..+++++ .+.+|.....|..++..+..
T Consensus 321 ~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 321 DMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 874 258999999999 89999999999998887654
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.74 E-value=3.7e-16 Score=129.68 Aligned_cols=199 Identities=16% Similarity=0.054 Sum_probs=136.1
Q ss_pred CcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhh
Q 048090 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264 (447)
Q Consensus 185 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 264 (447)
++...+..+...+.+.|++++|...|++.++.. +.+...+..+..++.+.|++++|...|+++... .|.+...
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----~P~~~~a 75 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN---PQDPEALYWLARTQLKLGLVNPALENGKTLVAR----TPRYLGG 75 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHH
Confidence 344455556666666666666666666666542 235556666666666666666666666655544 3445556
Q ss_pred HHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCCh
Q 048090 265 WTSMLGVYGRN-----------GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333 (447)
Q Consensus 265 ~~~l~~~~~~~-----------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 333 (447)
+..+..++... |++++|+..+++..+... -+...+..+..++...|++++|+..|+++.+. . .+.
T Consensus 76 ~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~ 151 (217)
T 2pl2_A 76 YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTP 151 (217)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCH
T ss_pred HHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cch
Confidence 66666666666 889999999998888532 25677888888889999999999999999876 4 678
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHh
Q 048090 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL 396 (447)
Q Consensus 334 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 396 (447)
..+..+..+|...|++++|...++++++.. |++..++..++.++...|++++|...++++.
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 888889999999999999999999998876 8888889999999999999999998888764
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.74 E-value=2.5e-16 Score=133.35 Aligned_cols=202 Identities=10% Similarity=0.062 Sum_probs=164.2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048090 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301 (447)
Q Consensus 222 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 301 (447)
.....+..+...+...|++++|...|+++... .+.+...+..+..++...|++++|...++++.+.. +.+..++.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 95 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE----NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYY 95 (243)
T ss_dssp ---------------------CCTTHHHHHTT----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHH
Confidence 35567788888999999999999999977664 55678889999999999999999999999998864 33678888
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHh
Q 048090 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381 (447)
Q Consensus 302 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 381 (447)
.+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++.+.. |.+..++..++..+..
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHH
Confidence 9999999999999999999999875 24467888999999999999999999999999876 7888889999999999
Q ss_pred cCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 382 CGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 382 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
.|++++|...++++++..|.+..++..++.+|...|++++|.+.++++.+.
T Consensus 172 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999999874
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.73 E-value=5.3e-15 Score=123.44 Aligned_cols=213 Identities=12% Similarity=-0.003 Sum_probs=165.4
Q ss_pred cHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhH
Q 048090 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265 (447)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 265 (447)
+...+..+...+...|++++|.+.++.+.+. .+.+...+..+...+...|++++|...++++... .+.+..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~ 79 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS---DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI----KPDSAEIN 79 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCChHHH
Confidence 4456667777777788888888888887776 2345667777888888888888888888876554 44566778
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 048090 266 TSMLGVYGRN-GYFKEVIKLYEAMLMNGTKPD-EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343 (447)
Q Consensus 266 ~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 343 (447)
..+...+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..+..++
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~ 157 (225)
T 2vq2_A 80 NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTK 157 (225)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHH
Confidence 8888888888 888888888888887322333 567777888888889999999998888765 133477788888889
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCC-CchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHH
Q 048090 344 CRAGELDKAWKLINEMLDRGHGS-SSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVML 409 (447)
Q Consensus 344 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 409 (447)
...|++++|...++++.+.. | .+...+..+...+...|+.+.+..+++.+.+..|.++.....+
T Consensus 158 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQSRV--EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 99999999999999988765 6 6777788888888889999999999998888888887765544
No 51
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=159.41 Aligned_cols=122 Identities=11% Similarity=0.030 Sum_probs=109.8
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhh
Q 048090 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM---NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335 (447)
Q Consensus 259 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 335 (447)
..-..+|+++|.+||+.|++++|.++|++|.+ .|+.||..||++||.+|++.|++++|.++|++|... |+.||..|
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvT 202 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLS 202 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHH
Confidence 34456899999999999999999999988764 589999999999999999999999999999999888 99999999
Q ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhc
Q 048090 336 YSCLVDLLCRAGE-LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382 (447)
Q Consensus 336 ~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 382 (447)
|+++|.++++.|+ .++|.++|++|.+.|+.| |..+|+.++.++.+.
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~P-D~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKL-QALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCS-HHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCC-ChhhcccccChhhHH
Confidence 9999999999998 478999999999999988 555699888665553
No 52
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.70 E-value=2e-15 Score=139.74 Aligned_cols=376 Identities=12% Similarity=-0.052 Sum_probs=251.2
Q ss_pred hhhhhhcccccCCcchHHHhhccCC-CCCCccHHHHHHHHHhCCCh---hhHHHHHHHHHhcCCCCchhhHHHHHHHhcc
Q 048090 23 LMLPYTTCRHKKNLGTLTNCLKFLN-PRNPLPFNVVISDFCRNGSP---LYALKTFSFMHVHGIFLDTYALCSSLTASTS 98 (447)
Q Consensus 23 l~~~~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 98 (447)
+...+.+.| ++++|...|.+.. ..++.++..|...|...|++ ++|.+.|++..+. ++..+..+...+..
T Consensus 9 la~~~~~~g---~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRG---DTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 444555555 6999999998764 35677788888888888888 8999999988764 45555566654444
Q ss_pred CC-----chhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhh---HHHHhccCC-CCchhhHHHHHHHHHhcCCHH
Q 048090 99 VK-----DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHD---AELMFDEIP-VKNSVCANALLSGYCEAKLWA 169 (447)
Q Consensus 99 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 169 (447)
.+ +.++|...|++..+.|. ...+..|...|...+..++ +.+.+.... ..++..+..+...|...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcc
Confidence 43 78899999999999763 3366777777777665444 344444333 235677888888888888555
Q ss_pred HHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCC---cHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhc----CChHH
Q 048090 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLS---AAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC----GLVTK 242 (447)
Q Consensus 170 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~ 242 (447)
++......+.+.-...++..+..+...+...| +.++|.+.|+...+. + +++...+..+...|... +++++
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~--g-~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSR--G-TVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT--T-CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 54444333322222233447788888888899 999999999999887 3 45666667788888766 79999
Q ss_pred HHHHHHhhhhhcccCCCcchhhHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-----cHH
Q 048090 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGV-Y--GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG-----QVK 314 (447)
Q Consensus 243 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-----~~~ 314 (447)
|...|++.. +.+...+..+... + ...+++++|...|++..+.| +...+..+...|. .| +++
T Consensus 236 A~~~~~~aa-------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 236 AQALLEKIA-------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHG-------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHc-------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 999999653 3456667777776 4 56899999999999999876 5666777777776 55 999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHh----cCCcc
Q 048090 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR----AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD----CGKFE 386 (447)
Q Consensus 315 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~ 386 (447)
+|..+|++.. .-+...+..|...|.. ..++++|..+|++..+.| +..+...|...|.. ..+.+
T Consensus 305 ~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~G~g~~~d~~ 375 (452)
T 3e4b_A 305 AAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG----QNSADFAIAQLFSQGKGTKPDPL 375 (452)
T ss_dssp HHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT----CTTHHHHHHHHHHSCTTBCCCHH
T ss_pred HHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC----hHHHHHHHHHHHHhCCCCCCCHH
Confidence 9999999875 3356777778877776 349999999999999877 34457788888764 45899
Q ss_pred HHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 387 LGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 387 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
+|..+++++.+.+++........+......++.++|..+.++-++
T Consensus 376 ~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 376 NAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999999999998876554444444333445567778887776655
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=4.7e-14 Score=121.64 Aligned_cols=228 Identities=11% Similarity=-0.036 Sum_probs=147.7
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhc----CCcHHHHHHHHHHHHHhhhcCCCChhH
Q 048090 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG----LSAAEFGRQVHAYMIRKCCNLGNDVFM 226 (447)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 226 (447)
+..++..+...+...|++++|++.|++..+. .+...+..+...+.. .+++++|...|++..+. + +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--N---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--C---CHHH
Confidence 4556666677777777777777777777662 244556666666666 77777777777777665 2 5566
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHH
Q 048090 227 QSSLIEMYGK----CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR----NGYFKEVIKLYEAMLMNGTKPDEV 298 (447)
Q Consensus 227 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~ 298 (447)
+..+...|.. .+++++|...|++.... .+..++..+...|.. .+++++|...|++..+.+ +..
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~ 147 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDL------KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGD 147 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc------CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHH
Confidence 6667777777 77777777777755432 255566666666666 677777777777776654 344
Q ss_pred HHHHHHHHHhc----cCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCchH
Q 048090 299 AFVTVISACSH----TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR----AGELDKAWKLINEMLDRGHGSSSVS 370 (447)
Q Consensus 299 ~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~ 370 (447)
.+..+...+.. .+++++|...|++..+. .+...+..+...|.. .+++++|...+++..+.+ | ..
T Consensus 148 a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~--~~ 219 (273)
T 1ouv_A 148 GCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N--GG 219 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C--HH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C--HH
Confidence 55555556655 66777777777766543 234556666666666 677777777777766654 2 44
Q ss_pred hHHHHHHHHHh----cCCccHHHHHHHHHhhhCCCch
Q 048090 371 MWGALLSACHD----CGKFELGKLAAQKALELDPHNV 403 (447)
Q Consensus 371 ~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~ 403 (447)
++..+...|.. .+++++|...++++.+.+|++.
T Consensus 220 a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 220 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 46666666666 6677777777777776666543
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.70 E-value=3.1e-15 Score=136.85 Aligned_cols=278 Identities=15% Similarity=0.065 Sum_probs=159.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCc----HhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCC---CChh
Q 048090 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYD----HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG---NDVF 225 (447)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 225 (447)
..+......+...|++++|...|++..+.+ +.+ ...+..+...+...|++++|...+++......... ....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 334455556666666666666666666542 112 23455566666666777777766666554321111 1134
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCC--cchhhHHHHHHHHHhcCC--------------------HHHHHH
Q 048090 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN--KDVVLWTSMLGVYGRNGY--------------------FKEVIK 283 (447)
Q Consensus 226 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~--------------------~~~a~~ 283 (447)
++..+...|...|++++|...++++......... ....++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 5566666667777777777766655443211111 113356666666667777 677776
Q ss_pred HHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHHcCCHHHHHH
Q 048090 284 LYEAMLMN----GTKP-DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGELDKAWK 354 (447)
Q Consensus 284 ~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 354 (447)
.+++..+. +..| ...++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 66665432 1111 1235566666677777777777777766543111111 2356666667777777777777
Q ss_pred HHHHHHhCC----CCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCC------chhHHHHHHHHHHhcCChHHHHH
Q 048090 355 LINEMLDRG----HGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH------NVGIYVMLSNLYAKFCMWDEIGQ 424 (447)
Q Consensus 355 ~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~ 424 (447)
.+++..... ..+....++..++..+...|++++|...++++++..+. ...++..++.+|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777665432 10111345666777777777777777777777665322 24566677777777777777777
Q ss_pred HHHHHHH
Q 048090 425 LRELMKE 431 (447)
Q Consensus 425 ~~~~m~~ 431 (447)
.+++..+
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766554
No 55
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.70 E-value=3.5e-15 Score=138.09 Aligned_cols=344 Identities=13% Similarity=0.021 Sum_probs=132.5
Q ss_pred HHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCch---hHHHHHHHHHHHcCCCCchhhHHHHHHHHHcc
Q 048090 58 ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA---RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKL 134 (447)
Q Consensus 58 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 134 (447)
...+.+.|++++|.++|++..+.| +...+..+...+...|+. ++|...|++..+. ++..+..+...+...
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 344444555555555555554443 122222223333333444 5555555555432 233333333323333
Q ss_pred C-----ChhhHHHHhccCCCC-chhhHHHHHHHHHhcCCHHH---HHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHH
Q 048090 135 L-----LIHDAELMFDEIPVK-NSVCANALLSGYCEAKLWAG---GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF 205 (447)
Q Consensus 135 g-----~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 205 (447)
+ +.++|...|++...+ +...+..|...|...+..++ +.+.+.+....| +......+...+...+.+++
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 2 444555555444322 23344444444444333222 222233222222 12233333444444343333
Q ss_pred HHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhc----CCH
Q 048090 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG---LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN----GYF 278 (447)
Q Consensus 206 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~ 278 (447)
+........+.. ...++..+..|...|...| +.++|++.|++.... .+++...+..+...|... +++
T Consensus 160 ~~~~a~~~~~~a--~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~----g~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 160 HLDDVERICKAA--LNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSR----GTVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp GHHHHHHHHHHH--TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----TCSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred CHHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCCCCCCCCH
Confidence 333322222221 1112224445555555555 555555555544332 233333334444444332 455
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcC-----CHH
Q 048090 279 KEVIKLYEAMLMNGTKPDEVAFVTVISA-C--SHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG-----ELD 350 (447)
Q Consensus 279 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~ 350 (447)
++|..+|++.. .| +...+..+... + ...+++++|..+|++..+. | +...+..|...|. .| +++
T Consensus 234 ~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 234 KTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 55555555544 22 22233333332 2 2345555555555555432 2 3344444444444 33 555
Q ss_pred HHHHHHHHHHhCCCCCCchHhHHHHHHHHHh----cCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHh----cCChHHH
Q 048090 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHD----CGKFELGKLAAQKALELDPHNVGIYVMLSNLYAK----FCMWDEI 422 (447)
Q Consensus 351 ~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 422 (447)
+|..+|++.. . .+..++..|...|.. ..++++|...|+++.+.+ ++.....|+.+|.. ..+.++|
T Consensus 305 ~A~~~~~~Aa-~----g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 305 AAEAHFEKAV-G----REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHTTT-T----TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHh-C----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 5555555544 2 234444455544444 225555555555554432 23334444444442 2345555
Q ss_pred HHHHHHHHHcC
Q 048090 423 GQLRELMKEKG 433 (447)
Q Consensus 423 ~~~~~~m~~~~ 433 (447)
...++...+.|
T Consensus 378 ~~~~~~A~~~g 388 (452)
T 3e4b_A 378 YVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHCC
Confidence 55555554443
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=9.1e-14 Score=119.81 Aligned_cols=225 Identities=13% Similarity=-0.022 Sum_probs=192.7
Q ss_pred cHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHh----cCChHHHHHHHHhhhhhcccCCCcc
Q 048090 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK----CGLVTKALQVFNLAGHRLEGEINKD 261 (447)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 261 (447)
+..++..+...+...|++++|...|++..+. + +...+..+...|.. .+++++|...|++.... .+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------~~ 73 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL------NY 73 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TC
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC------CC
Confidence 5567777888888999999999999998884 3 56778889999999 99999999999976553 26
Q ss_pred hhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhcCCCCCh
Q 048090 262 VVLWTSMLGVYGR----NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH----TGQVKLGIEYFEWMVHDYKLEPGP 333 (447)
Q Consensus 262 ~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 333 (447)
...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+. + +.
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~ 146 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DG 146 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CH
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cH
Confidence 7788889999999 999999999999998865 67788888888888 99999999999999865 3 56
Q ss_pred hhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHh----cCCccHHHHHHHHHhhhCCCchhH
Q 048090 334 EHYSCLVDLLCR----AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD----CGKFELGKLAAQKALELDPHNVGI 405 (447)
Q Consensus 334 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 405 (447)
..+..+...|.. .+++++|...+++..+.+ +..++..+...|.. .+++++|...++++.+.+| +..
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a 220 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGG 220 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHH
Confidence 677888888888 899999999999998875 45668889999999 9999999999999998876 677
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHHcCC
Q 048090 406 YVMLSNLYAK----FCMWDEIGQLRELMKEKGL 434 (447)
Q Consensus 406 ~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 434 (447)
+..++.+|.+ .+++++|.+.+++..+.|.
T Consensus 221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 221 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 8889999998 9999999999999988653
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.69 E-value=4e-15 Score=120.07 Aligned_cols=166 Identities=14% Similarity=0.124 Sum_probs=125.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 048090 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340 (447)
Q Consensus 261 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 340 (447)
+...|..+...|.+.|++++|+..|++..+... -+..++..+..++...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 455677777777777777777777777776532 25666777777777777888887777777654 133456666677
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChH
Q 048090 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420 (447)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 420 (447)
..+...++++.|...+.+..... |.+..++..++.++...|++++|...++++++.+|.++.+|..++.+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 77778888888888888877765 7777778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHH
Q 048090 421 EIGQLRELMKE 431 (447)
Q Consensus 421 ~A~~~~~~m~~ 431 (447)
+|++.|++..+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888888776
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.69 E-value=1.8e-15 Score=140.83 Aligned_cols=213 Identities=10% Similarity=-0.045 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCCh-HHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHH
Q 048090 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV-TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281 (447)
Q Consensus 203 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 281 (447)
++.+...++..... .+.+...+..+...+...|++ ++|++.|+++... .+.+...|..+..+|.+.|++++|
T Consensus 84 ~~~al~~l~~~~~~---~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A 156 (474)
T 4abn_A 84 MEKTLQQMEEVLGS---AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL----EPELVEAWNQLGEVYWKKGDVTSA 156 (474)
T ss_dssp HHHHHHHHHHHHTT---CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhcc---CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 45566666655443 334677888888888889999 9999999877665 455678889999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc------
Q 048090 282 IKLYEAMLMNGTKPDEVAFVTVISACSHT---------GQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA------ 346 (447)
Q Consensus 282 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 346 (447)
...|++..+. .|+...+..+..++... |++++|...|+++.+. .+.+...|..+..+|...
T Consensus 157 ~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 157 HTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhcc
Confidence 9999999885 56678888888888888 9999999999999865 133588889999999988
Q ss_pred --CCHHHHHHHHHHHHhCCCCC---CchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHH
Q 048090 347 --GELDKAWKLINEMLDRGHGS---SSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421 (447)
Q Consensus 347 --g~~~~A~~~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 421 (447)
|++++|+..|++.++.. | .+..+|..++.+|...|++++|...++++++.+|.+..++..+..++...|++++
T Consensus 233 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999876 7 7888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 048090 422 IGQLREL 428 (447)
Q Consensus 422 A~~~~~~ 428 (447)
|++.+++
T Consensus 311 Ai~~~~~ 317 (474)
T 4abn_A 311 LLESKGK 317 (474)
T ss_dssp HHHHTTT
T ss_pred HHHHhcc
Confidence 9875543
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.69 E-value=3.3e-15 Score=132.81 Aligned_cols=278 Identities=15% Similarity=0.054 Sum_probs=206.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCc----HhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcC---CCChhH
Q 048090 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYD----HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL---GNDVFM 226 (447)
Q Consensus 154 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~ 226 (447)
.+......+...|++++|...|++..+.. +.+ ...+..+...+...|++++|...+++........ +....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34455667788899999999998888763 222 3567777888888999999999988876642111 112456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCc--chhhHHHHHHHHHhcCC--------------------HHHHHHH
Q 048090 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK--DVVLWTSMLGVYGRNGY--------------------FKEVIKL 284 (447)
Q Consensus 227 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~--------------------~~~a~~~ 284 (447)
+..+...+...|++++|...+++..........+ ...++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 7888888999999999999998765543221111 13467788888888999 8999988
Q ss_pred HHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHHcCCHHHHHHH
Q 048090 285 YEAMLMN----GTKP-DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGELDKAWKL 355 (447)
Q Consensus 285 ~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 355 (447)
+++.... +..| ...++..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8876542 1111 2346778888899999999999999988653111111 33778888999999999999999
Q ss_pred HHHHHhCC----CCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCC------chhHHHHHHHHHHhcCChHHHHHH
Q 048090 356 INEMLDRG----HGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH------NVGIYVMLSNLYAKFCMWDEIGQL 425 (447)
Q Consensus 356 ~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~ 425 (447)
+++..... ..+....++..++..+...|++++|...++++++..+. ...++..++.+|.+.|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 99886542 11112556888999999999999999999999886532 255788999999999999999999
Q ss_pred HHHHHHc
Q 048090 426 RELMKEK 432 (447)
Q Consensus 426 ~~~m~~~ 432 (447)
+++..+.
T Consensus 326 ~~~a~~~ 332 (338)
T 3ro2_A 326 AEKHLEI 332 (338)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9998863
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.68 E-value=2.3e-15 Score=138.13 Aligned_cols=277 Identities=13% Similarity=-0.001 Sum_probs=189.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcH----hhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcC---CCChhHH
Q 048090 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDH----FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL---GNDVFMQ 227 (447)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ 227 (447)
+..+...+...|++++|+..|++..+.+ +.+. ..+..+...+...|++++|...+++..+..... +....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 4455566777777777777777777653 1222 356666677777778888887777776542111 1234566
Q ss_pred HHHHHHHHhcCChHHHHHHHHhhhhhcccC--CCcchhhHHHHHHHHHhcCC-----------------HHHHHHHHHHH
Q 048090 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGE--INKDVVLWTSMLGVYGRNGY-----------------FKEVIKLYEAM 288 (447)
Q Consensus 228 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~m 288 (447)
..+...|...|++++|...++++....... .+....++..+...|...|+ +++|...+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 777777888888888888887654432111 12234467777778888888 88888877776
Q ss_pred HhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048090 289 LMN----GTKP-DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGELDKAWKLINEM 359 (447)
Q Consensus 289 ~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 359 (447)
.+. +..+ ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 542 1111 2346777778888888999888888887653111111 236777888888999999999998887
Q ss_pred HhCCC----CCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCC------chhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048090 360 LDRGH----GSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH------NVGIYVMLSNLYAKFCMWDEIGQLRELM 429 (447)
Q Consensus 360 ~~~~~----~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 429 (447)
..... .+....++..++.++...|++++|...++++++..+. ...++..++.+|...|++++|.+.+++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 65431 0112456788888999999999999999988876432 3457888899999999999999988887
Q ss_pred HHc
Q 048090 430 KEK 432 (447)
Q Consensus 430 ~~~ 432 (447)
.+.
T Consensus 370 l~~ 372 (411)
T 4a1s_A 370 LQL 372 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.67 E-value=9.3e-15 Score=126.09 Aligned_cols=224 Identities=12% Similarity=0.019 Sum_probs=186.2
Q ss_pred hcCCcHHHHHHHHHHHHHhhhcC-CCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcC
Q 048090 198 AGLSAAEFGRQVHAYMIRKCCNL-GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNG 276 (447)
Q Consensus 198 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 276 (447)
...+++++|...++++.+..+.. +.+..++..+...+...|++++|...|+++... .+.+..+|..+..++...|
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI----RPDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHTT
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHcc
Confidence 45689999999999998862111 124678899999999999999999999987775 5567889999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 048090 277 YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLI 356 (447)
Q Consensus 277 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 356 (447)
++++|...|+++.+.. +.+..++..+..++...|++++|...|+++.+. .|+..........+...|++++|...+
T Consensus 92 ~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp CHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999864 235778899999999999999999999999865 565444455555667789999999999
Q ss_pred HHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCC----chhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 357 NEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH----NVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 357 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
++..... |++...+ .++..+...++.++|...++++++..|. +..++..++.+|.+.|++++|...+++..+.
T Consensus 168 ~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 168 KQHFEKS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 9888775 5565544 4777888888889999999999887653 3788999999999999999999999999874
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.67 E-value=9.2e-13 Score=126.06 Aligned_cols=405 Identities=10% Similarity=-0.024 Sum_probs=249.6
Q ss_pred hHHHhhhhhhhhhcccccCCcchHHHhhccCC---CCCCccHHHHHHHHHhCCC---hhhHHHHHHHHHhcC-CCCchhh
Q 048090 16 LIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLN---PRNPLPFNVVISDFCRNGS---PLYALKTFSFMHVHG-IFLDTYA 88 (447)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~-~~p~~~~ 88 (447)
|..+|..++....+.+ +++.|..+|+++. |.....|..-+..-.+.++ ++.+..+|++.+... ..|+...
T Consensus 65 d~~~W~~yi~~~~~~~---~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLK---QWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 4566666666665554 4666666666543 3344456666666666666 666667776666542 1256666
Q ss_pred HHHHHHHhccCCch--------hHHHHHHHHHHH-cCC-CCc-hhhHHHHHHHHHc---------cCChhhHHHHhccCC
Q 048090 89 LCSSLTASTSVKDA--------RFGKQVQAHVTK-SGW-LSS-VFVGSALIDLYAK---------LLLIHDAELMFDEIP 148 (447)
Q Consensus 89 ~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~ 148 (447)
|...+....+.++. +...++|+..+. .|. .++ ...|...+..... .++++.+..+|++..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 65555544443332 223355554443 243 333 3455555544332 234555666666554
Q ss_pred C-C--c-hhhHHHHHHHHHhcC-------------CHHHHHHHHHhhhh--cCC----C-----------C-----c---
Q 048090 149 V-K--N-SVCANALLSGYCEAK-------------LWAGGLELVRLMPA--LGL----D-----------Y-----D--- 186 (447)
Q Consensus 149 ~-~--~-~~~~~~l~~~~~~~~-------------~~~~a~~~~~~~~~--~~~----~-----------~-----~--- 186 (447)
. | + ..+|.....--...+ +++.|...+.++.. .++ + | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 2 2 1 122222211111101 12223333333211 011 0 1 0
Q ss_pred HhhHHHHHHHHhcCC-------cHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHH-HHHHhhhhhcccCC
Q 048090 187 HFTLSALLRACAGLS-------AAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL-QVFNLAGHRLEGEI 258 (447)
Q Consensus 187 ~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~ 258 (447)
...|...+..--..+ ..+.+..+|++.+.. ++.....|...+..+...|+.++|. ++|++.... .
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~---~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~----~ 374 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH---VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC----I 374 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH----C
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh----C
Confidence 012222222211111 123455678887776 4457778888888888889999996 999877654 5
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------CCC------------HHHHHHHHHHHhccCcHHHHH
Q 048090 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT---------KPD------------EVAFVTVISACSHTGQVKLGI 317 (447)
Q Consensus 259 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~---------~p~------------~~~~~~ll~~~~~~~~~~~a~ 317 (447)
|.+...|...+....+.|++++|..+|+++..... .|+ ..+|...+....+.|..+.|.
T Consensus 375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence 66777788888888899999999999999876410 132 235777777777889999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHh
Q 048090 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCRAG-ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL 396 (447)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 396 (447)
.+|.++.+.. ..+....|...+..-.+.+ +.+.|..+|+..++.- |++...|...+......|+.+.|..+|++++
T Consensus 455 ~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal 531 (679)
T 4e6h_A 455 KIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSI 531 (679)
T ss_dssp HHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999998641 1223344544443344444 5899999999998874 8788888889998889999999999999999
Q ss_pred hhCCC---chhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 048090 397 ELDPH---NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433 (447)
Q Consensus 397 ~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 433 (447)
...|+ ....|..++..-.+.|+.+.+.++.+++.+.-
T Consensus 532 ~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 532 DKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp TTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 98873 66789999998899999999999999998753
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.66 E-value=5e-15 Score=135.50 Aligned_cols=308 Identities=14% Similarity=0.057 Sum_probs=187.7
Q ss_pred chhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHh
Q 048090 85 DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164 (447)
Q Consensus 85 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 164 (447)
....+......+...|++++|...++++++.+ +.+... -...+..+...+..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~---------------------------~~~~~~~l~~~~~~ 59 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKT---------------------------LSAIYSQLGNAYFY 59 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHH---------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHH---------------------------HHHHHHHHHHHHHH
Confidence 34444555556666667777777666666653 112100 01233444444444
Q ss_pred cCCHHHHHHHHHhhhhc----CCCC-cHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCC---ChhHHHHHHHHHHh
Q 048090 165 AKLWAGGLELVRLMPAL----GLDY-DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN---DVFMQSSLIEMYGK 236 (447)
Q Consensus 165 ~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 236 (447)
.|++++|...+++..+. +-.| ...++..+...+...|++++|...+++..+..+.... ...++..+...|..
T Consensus 60 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 60 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 139 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 55555555544443221 1111 1334555555666666666666666666554222111 13356666677777
Q ss_pred cCC--------------------hHHHHHHHHhhhhhcccC--CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-
Q 048090 237 CGL--------------------VTKALQVFNLAGHRLEGE--INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT- 293 (447)
Q Consensus 237 ~g~--------------------~~~A~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~- 293 (447)
.|+ +++|...+++........ .+....++..+...+...|++++|...+++..+...
T Consensus 140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 777 777777776554432211 111234577777888888888888888887765310
Q ss_pred CCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC--
Q 048090 294 KPD----EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGELDKAWKLINEMLDRG-- 363 (447)
Q Consensus 294 ~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 363 (447)
.++ ..++..+...+...|++++|...+++......-.++ ..++..+...|...|++++|...+++.....
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 111 236777788888889999998888887643111111 4567788888899999999999988876542
Q ss_pred --CCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhC------CCchhHHHHHHHHHHhcCChH
Q 048090 364 --HGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD------PHNVGIYVMLSNLYAKFCMWD 420 (447)
Q Consensus 364 --~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~ 420 (447)
..+....++..++.++...|++++|...++++++.. +....++..++..+...|+..
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 112225568888999999999999999999888763 234667888888888887663
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.66 E-value=2.2e-14 Score=115.76 Aligned_cols=173 Identities=13% Similarity=0.058 Sum_probs=152.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 048090 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302 (447)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 302 (447)
++.+|..+...|...|++++|++.|+++.+. .|.+..++..+..+|.+.|++++|...+....... +.+...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA----DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHH
Confidence 6778899999999999999999999987775 56678889999999999999999999999998864 335677777
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhc
Q 048090 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382 (447)
Q Consensus 303 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 382 (447)
+...+...++++.+...+.+.... .+.+...+..+..+|.+.|++++|++.|++.++.+ |.+..+|..++.++.+.
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhhhHHHHHHHHHHHC
Confidence 888889999999999999999865 23457888999999999999999999999999887 99999999999999999
Q ss_pred CCccHHHHHHHHHhhhCCCchh
Q 048090 383 GKFELGKLAAQKALELDPHNVG 404 (447)
Q Consensus 383 g~~~~a~~~~~~~~~~~~~~~~ 404 (447)
|++++|...|+++++.+|.++.
T Consensus 155 g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 155 GLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp TCHHHHHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHhCCccCHH
Confidence 9999999999999999987653
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.64 E-value=3.2e-13 Score=118.54 Aligned_cols=216 Identities=10% Similarity=0.059 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHhhhcCCCChhHHHHHHHHHH-------hcCCh-------HHHHHHHHhhhhhcccCCCcchhhHHHHH
Q 048090 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG-------KCGLV-------TKALQVFNLAGHRLEGEINKDVVLWTSML 269 (447)
Q Consensus 204 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 269 (447)
+.|..+|++++... +.++..|..++..+. +.|++ ++|..+|++.... -.+.+...|..++
T Consensus 33 ~~a~~~~~~al~~~---p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~---~~p~~~~~~~~~~ 106 (308)
T 2ond_A 33 KRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST---LLKKNMLLYFAYA 106 (308)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT---TTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH---hCcccHHHHHHHH
Confidence 45666666666652 235556666665554 24664 6777777755441 0233445677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-Hc
Q 048090 270 GVYGRNGYFKEVIKLYEAMLMNGTKPD-EV-AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC-RA 346 (447)
Q Consensus 270 ~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 346 (447)
..+.+.|++++|..+|+++.+. .|+ .. .|..+...+.+.|++++|..+|++..+. .+++...|........ ..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~ 182 (308)
T 2ond_A 107 DYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCS 182 (308)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTS
T ss_pred HHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHc
Confidence 7777777777777777777663 343 22 5666666666777777777777777643 1223334433322221 25
Q ss_pred CCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhh---CCC-chhHHHHHHHHHHhcCChHHH
Q 048090 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL---DPH-NVGIYVMLSNLYAKFCMWDEI 422 (447)
Q Consensus 347 g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A 422 (447)
|++++|..+|+++++.. |++...|..++..+.+.|++++|..+|+++++. .|. ...+|..++..+.+.|+.++|
T Consensus 183 ~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a 260 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260 (308)
T ss_dssp CCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777776654 666667777777777777777777777777764 232 455677777777777777777
Q ss_pred HHHHHHHHH
Q 048090 423 GQLRELMKE 431 (447)
Q Consensus 423 ~~~~~~m~~ 431 (447)
..+++++.+
T Consensus 261 ~~~~~~a~~ 269 (308)
T 2ond_A 261 LKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777665
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.64 E-value=1.9e-14 Score=130.67 Aligned_cols=238 Identities=9% Similarity=-0.031 Sum_probs=163.0
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCC---CcchhhHH
Q 048090 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGN---DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI---NKDVVLWT 266 (447)
Q Consensus 193 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~ 266 (447)
....+...|++++|...+++..+.....+. ...++..+...|...|++++|...+++......... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344456677777777777777664222221 235667777777788888888877776655433221 11234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHh---cCCCC-ChhhHH
Q 048090 267 SMLGVYGRNGYFKEVIKLYEAMLMN----GTKP-DEVAFVTVISACSHTGQVKLGIEYFEWMVHD---YKLEP-GPEHYS 337 (447)
Q Consensus 267 ~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~~~~~ 337 (447)
.+..+|...|++++|...+++..+. +-.+ ...++..+..+|...|++++|...+++..+. .+..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7788888888888888888877653 1111 1246777888888899999999888887651 11213 366788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC---CCCchHhHHHHHHHHHhcCC---ccHHHHHHHHHhhhCCCchhHHHHHHH
Q 048090 338 CLVDLLCRAGELDKAWKLINEMLDRGH---GSSSVSMWGALLSACHDCGK---FELGKLAAQKALELDPHNVGIYVMLSN 411 (447)
Q Consensus 338 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~ 411 (447)
.+...|.+.|++++|...+++...... .|.....+..+...+...|+ +++|..++++. ...|....++..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 888889999999999999988765421 12233345678888888888 67777777665 222445667888999
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 048090 412 LYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~ 431 (447)
.|...|++++|.+.+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998876
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.62 E-value=2.9e-14 Score=130.76 Aligned_cols=247 Identities=13% Similarity=0.005 Sum_probs=157.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhc----CC-CCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcC---CCChhH
Q 048090 155 ANALLSGYCEAKLWAGGLELVRLMPAL----GL-DYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL---GNDVFM 226 (447)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~ 226 (447)
+..+...|...|++++|...+++..+. +- +.....+..+...+...|++++|...+++..+..... +....+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 444444455555555555555444321 10 1123345555666666667776666666665542111 112345
Q ss_pred HHHHHHHHHhcCC-----------------hHHHHHHHHhhhhhcccC--CCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048090 227 QSSLIEMYGKCGL-----------------VTKALQVFNLAGHRLEGE--INKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287 (447)
Q Consensus 227 ~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 287 (447)
+..+...|...|+ +++|...+++........ .+....++..+...+...|++++|...+++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6667777777777 777777776554332111 112234677788888888898888888888
Q ss_pred HHhCCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC----ChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 048090 288 MLMNGTK-PD----EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP----GPEHYSCLVDLLCRAGELDKAWKLINE 358 (447)
Q Consensus 288 m~~~~~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 358 (447)
..+.... ++ ..++..+...+...|++++|...+++......-.. ...++..+...|...|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7653110 11 23677888888899999999999988765311111 146677888889999999999999998
Q ss_pred HHhCC----CCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCC
Q 048090 359 MLDRG----HGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401 (447)
Q Consensus 359 ~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 401 (447)
.+... ..+....++..++.+|...|++++|...++++++..+.
T Consensus 329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 76542 11223446888999999999999999999999887653
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.61 E-value=7.5e-15 Score=129.08 Aligned_cols=243 Identities=16% Similarity=0.132 Sum_probs=130.5
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHhhh-----cCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhccc----CCC
Q 048090 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCC-----NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG----EIN 259 (447)
Q Consensus 189 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~ 259 (447)
++..+...+...|++++|..+++++.+... ..+....++..+...|...|++++|...++++...... ..+
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 344444444444444444444444443200 01112334455555555555555555555544332111 112
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc-----
Q 048090 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN------GTKP-DEVAFVTVISACSHTGQVKLGIEYFEWMVHDY----- 327 (447)
Q Consensus 260 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----- 327 (447)
....++..+...|...|++++|...++++.+. +..| ....+..+...+...|++++|..+++++....
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 23445566666666666666666666666543 1112 23456666667777777777777777765421
Q ss_pred CCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-------CCCCchH------hHHHHHHHHHhcCCccHHHHHHH
Q 048090 328 KLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRG-------HGSSSVS------MWGALLSACHDCGKFELGKLAAQ 393 (447)
Q Consensus 328 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~ 393 (447)
+..| ...++..+..+|...|++++|...++++.+.. ..+.... .+..+...+...+.+.++...++
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 0122 24556777777788888888888887776531 1121211 23334444555667777888888
Q ss_pred HHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 394 KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 394 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
++....|....++..++.+|.+.|++++|.+.+++..+
T Consensus 269 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 269 ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999998875
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.61 E-value=1.1e-12 Score=115.16 Aligned_cols=225 Identities=11% Similarity=0.055 Sum_probs=166.7
Q ss_pred HHHHHHHHhhhhcCCCCcHhhHHHHHHHHh-------cCCcH-------HHHHHHHHHHHHhhhcCCCChhHHHHHHHHH
Q 048090 169 AGGLELVRLMPALGLDYDHFTLSALLRACA-------GLSAA-------EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234 (447)
Q Consensus 169 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 234 (447)
++|..+|++..... +.+...|..++..+. +.|++ ++|..+|++.++. -.+.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~--~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--LLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT--TTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH--hCcccHHHHHHHHHHH
Confidence 57777777777652 345556666666554 34665 8899999888873 0123556888888889
Q ss_pred HhcCChHHHHHHHHhhhhhcccCCCcchh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCc
Q 048090 235 GKCGLVTKALQVFNLAGHRLEGEINKDVV-LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC-SHTGQ 312 (447)
Q Consensus 235 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~ 312 (447)
.+.|++++|..+|+++... .+.+.. .|..++..+.+.|++++|..+|++..+... ++...|....... ...|+
T Consensus 110 ~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI----EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS----SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCC
T ss_pred HhcCCHHHHHHHHHHHHhc----cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCC
Confidence 9999999999999877653 222343 788888888889999999999999887642 3344444333332 23689
Q ss_pred HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCC-chHhHHHHHHHHHhcCCccHHHH
Q 048090 313 VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRG-HGSS-SVSMWGALLSACHDCGKFELGKL 390 (447)
Q Consensus 313 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~a~~ 390 (447)
+++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++.+... ..|+ ....|..++..+...|+.+.|..
T Consensus 185 ~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~ 262 (308)
T 2ond_A 185 KSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp HHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999988752 3357888888888899999999999999998863 3343 56678888888999999999999
Q ss_pred HHHHHhhhCCCch
Q 048090 391 AAQKALELDPHNV 403 (447)
Q Consensus 391 ~~~~~~~~~~~~~ 403 (447)
+++++.+..|++.
T Consensus 263 ~~~~a~~~~p~~~ 275 (308)
T 2ond_A 263 VEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHTTTTT
T ss_pred HHHHHHHHccccc
Confidence 9999999888754
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.60 E-value=4.5e-14 Score=125.44 Aligned_cols=285 Identities=14% Similarity=0.063 Sum_probs=172.9
Q ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCC
Q 048090 88 ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167 (447)
Q Consensus 88 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (447)
.+......+...|++++|...++++++.. +.+... -...+..+...+...|+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~---------------------------~~~~~~~l~~~~~~~g~ 58 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKT---------------------------LSAIYSQLGNAYFYLHD 58 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHH---------------------------HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHH---------------------------HHHHHHHHHHHHHHcCC
Confidence 33444455666677777777777666653 112100 01233344444444445
Q ss_pred HHHHHHHHHhhhhc----CCCC-cHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCC---ChhHHHHHHHHHHhcCC
Q 048090 168 WAGGLELVRLMPAL----GLDY-DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN---DVFMQSSLIEMYGKCGL 239 (447)
Q Consensus 168 ~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~ 239 (447)
+++|.+.+++..+. +..| ....+..+...+...|++++|...+++..+..+.... ...++..+...+...|+
T Consensus 59 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 59 YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 55444444443221 1111 1334555556666666666666666666554222111 12356666677777777
Q ss_pred --------------------hHHHHHHHHhhhhhcccC--CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---C
Q 048090 240 --------------------VTKALQVFNLAGHRLEGE--INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT---K 294 (447)
Q Consensus 240 --------------------~~~A~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~---~ 294 (447)
+++|...+++........ .+....++..+...+...|++++|...+++..+... .
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 777777776543321111 111234677778888888999998888888765310 1
Q ss_pred C--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC----C
Q 048090 295 P--DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGELDKAWKLINEMLDRG----H 364 (447)
Q Consensus 295 p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~ 364 (447)
+ ...++..+...+...|++++|...+++......-.++ ..++..+...+...|++++|...++++.... .
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 1 1236777888888999999999999887643111111 5567788888999999999999998876542 1
Q ss_pred CCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCC
Q 048090 365 GSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400 (447)
Q Consensus 365 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 400 (447)
.+....++..+..++...|++++|...++++++..+
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 122244688899999999999999999999988664
No 71
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.60 E-value=6.7e-14 Score=135.50 Aligned_cols=168 Identities=15% Similarity=0.217 Sum_probs=141.6
Q ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhhH
Q 048090 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG-PEHY 336 (447)
Q Consensus 258 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~ 336 (447)
.|.+..+|+.+...|.+.|++++|+..|++..+... -+..++..+..++.+.|++++|+..|++..+. .|+ ...|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~ 80 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAY 80 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHH
Confidence 344567788888888888888888888888887532 24677888888888889999999998888864 554 7788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhc
Q 048090 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKF 416 (447)
Q Consensus 337 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 416 (447)
..+..+|.+.|++++|++.|++.++.+ |++..+|..++.++...|++++|...|+++++.+|++..++..++.+|...
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc
Confidence 888899999999999999999988876 888888999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHH
Q 048090 417 CMWDEIGQLRELMKE 431 (447)
Q Consensus 417 g~~~~A~~~~~~m~~ 431 (447)
|++++|.+.+++..+
T Consensus 159 g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 159 CDWTDYDERMKKLVS 173 (723)
T ss_dssp TCCTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999888887764
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.59 E-value=2.2e-13 Score=123.66 Aligned_cols=239 Identities=7% Similarity=-0.028 Sum_probs=176.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhc----CCCC-cHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCC----ChhHHH
Q 048090 158 LLSGYCEAKLWAGGLELVRLMPAL----GLDY-DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN----DVFMQS 228 (447)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 228 (447)
....+...|++++|+..+++..+. +-.+ ...++..+...+...|+++.|...+++..+..+.... ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556677889999999988887653 1111 2356777888888899999999999988876433221 135678
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhhhcccCC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHH
Q 048090 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEI--NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN----GT-KPDEVAFV 301 (447)
Q Consensus 229 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~ 301 (447)
.+..+|...|++++|...|+++........ +....++..+..+|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888899999999999999987765432211 112246888899999999999999999988762 22 33466788
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhcCC--CC-ChhhHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCchHhHHHH
Q 048090 302 TVISACSHTGQVKLGIEYFEWMVHDYKL--EP-GPEHYSCLVDLLCRAGE---LDKAWKLINEMLDRGHGSSSVSMWGAL 375 (447)
Q Consensus 302 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~~l 375 (447)
.+...+...|++++|...+++......- .| ....+..+...+...|+ +++|+.++++. +..|....++..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8889999999999999999887653111 12 23335667778888888 77788877776 3335556678889
Q ss_pred HHHHHhcCCccHHHHHHHHHhhhC
Q 048090 376 LSACHDCGKFELGKLAAQKALELD 399 (447)
Q Consensus 376 ~~~~~~~g~~~~a~~~~~~~~~~~ 399 (447)
+..|...|++++|...++++++..
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988754
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.58 E-value=2.2e-13 Score=109.74 Aligned_cols=166 Identities=17% Similarity=0.114 Sum_probs=129.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048090 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341 (447)
Q Consensus 262 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 341 (447)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 3445566667777777777777777766542 235666777777777888888888888887754 2335677777888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHH
Q 048090 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421 (447)
Q Consensus 342 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 421 (447)
.+...|++++|.+.++++.... |.+..++..++.++...|++++|...++++++..|.++.++..++.++...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888888775 77778888888888899999999999999988888888888899999999999999
Q ss_pred HHHHHHHHHHc
Q 048090 422 IGQLRELMKEK 432 (447)
Q Consensus 422 A~~~~~~m~~~ 432 (447)
|...+++..+.
T Consensus 163 A~~~~~~~~~~ 173 (186)
T 3as5_A 163 ALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99988888763
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.57 E-value=5.7e-12 Score=113.84 Aligned_cols=88 Identities=13% Similarity=0.097 Sum_probs=37.7
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCc--hHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCC-----c-hhHHHHHHHHHH
Q 048090 343 LCRAGELDKAWKLINEMLDRGHGSSS--VSMWGALLSACHDCGKFELGKLAAQKALELDPH-----N-VGIYVMLSNLYA 414 (447)
Q Consensus 343 ~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~-~~~~~~l~~~~~ 414 (447)
+...|++++|...+++.......++. ...+..+...+...|++++|...++++....+. . ..++..++.++.
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 44455555555555554433211000 112334444555555555555555544432210 1 123444444555
Q ss_pred hcCChHHHHHHHHHHH
Q 048090 415 KFCMWDEIGQLRELMK 430 (447)
Q Consensus 415 ~~g~~~~A~~~~~~m~ 430 (447)
..|++++|...+++..
T Consensus 305 ~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 305 QAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHH
Confidence 5555555555544443
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.57 E-value=2.4e-14 Score=125.78 Aligned_cols=249 Identities=11% Similarity=0.024 Sum_probs=166.7
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhhhhc-------CCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhh-----
Q 048090 151 NSVCANALLSGYCEAKLWAGGLELVRLMPAL-------GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC----- 218 (447)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----- 218 (447)
+..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...++++.....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456777778888888888888888877652 2233445677777888888888888888888876521
Q ss_pred cCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhccc----CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 048090 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG----EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN--- 291 (447)
Q Consensus 219 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--- 291 (447)
..+....++..+...|...|++++|...|+++...... ..+.....+..+...+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 12234567788888888899999999888876554211 12334556788888899999999999999888764
Q ss_pred ---CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc------CCCCChh-------hHHHHHHHHHHcCCHHHHHH
Q 048090 292 ---GTKP-DEVAFVTVISACSHTGQVKLGIEYFEWMVHDY------KLEPGPE-------HYSCLVDLLCRAGELDKAWK 354 (447)
Q Consensus 292 ---~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~-------~~~~l~~~~~~~g~~~~A~~ 354 (447)
+..| ...++..+..++...|++++|...++++.+.. ...+... .+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2133 34567788888899999999999998887531 1122211 12222333445566677777
Q ss_pred HHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCC
Q 048090 355 LINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401 (447)
Q Consensus 355 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 401 (447)
.++...... |....++..++.+|...|++++|...++++++..|.
T Consensus 266 ~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 266 WYKACKVDS--PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --------C--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHhhcCCCC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 777777655 777888999999999999999999999999987664
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.57 E-value=3.6e-13 Score=125.42 Aligned_cols=214 Identities=11% Similarity=-0.065 Sum_probs=183.8
Q ss_pred CHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcH-HHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHH
Q 048090 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA-EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQ 245 (447)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 245 (447)
.++++++.+++..... +.+...+..+..++...|++ ++|.+.|++.++.. +.+...+..+..+|...|++++|..
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE---PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4667777777766542 34677888889999999999 99999999999973 3468899999999999999999999
Q ss_pred HHHhhhhhcccCCCcchhhHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc------
Q 048090 246 VFNLAGHRLEGEINKDVVLWTSMLGVYGRN---------GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHT------ 310 (447)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------ 310 (447)
.|+++... .|+...+..+..++... |++++|...+++..+.. +-+...+..+..++...
T Consensus 159 ~~~~al~~-----~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 159 CFSGALTH-----CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHHHHHTT-----CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhh-----CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhcc
Confidence 99987663 56678899999999999 99999999999999864 33678888999999888
Q ss_pred --CcHHHHHHHHHHHHHhcCCCC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCC
Q 048090 311 --GQVKLGIEYFEWMVHDYKLEP----GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384 (447)
Q Consensus 311 --~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 384 (447)
|++++|...|++..+. .| +...|..+..+|...|++++|.+.|++..+.. |++..++..+..++...|+
T Consensus 233 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSR 307 (474)
T ss_dssp CHHHHHHHHHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHH
Confidence 9999999999999875 45 68889999999999999999999999999887 8899899999999999999
Q ss_pred ccHHHHHHHHH
Q 048090 385 FELGKLAAQKA 395 (447)
Q Consensus 385 ~~~a~~~~~~~ 395 (447)
+++|...+.++
T Consensus 308 ~~eAi~~~~~~ 318 (474)
T 4abn_A 308 LTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHTTTC
T ss_pred HHHHHHHhccc
Confidence 99888766543
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.56 E-value=7.4e-13 Score=110.75 Aligned_cols=206 Identities=10% Similarity=0.043 Sum_probs=91.9
Q ss_pred HhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHH
Q 048090 187 HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266 (447)
Q Consensus 187 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 266 (447)
+..+......+...|++++|...|+..++. ..+++...+..+..++...|++++|+..|++.... .+.+...|.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~ 80 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKL--TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK----NYNLANAYI 80 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCSHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh----CcchHHHHH
Confidence 344444445555555555555555555554 21144444444555555555555555555544332 222344445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC---hhhH
Q 048090 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE-------VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG---PEHY 336 (447)
Q Consensus 267 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 336 (447)
.+..+|...|++++|...+++..+.... +. ..|..+...+...|++++|...|+++.+ ..|+ ...|
T Consensus 81 ~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~ 156 (228)
T 4i17_A 81 GKSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDAL 156 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHH
Confidence 5555555555555555555555443211 12 2233444444444455555555544442 2332 2333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHH
Q 048090 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411 (447)
Q Consensus 337 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 411 (447)
..+..+|...| ...++++...+ +.+...+... .....+.+++|...++++++..|.+..+...+..
T Consensus 157 ~~l~~~~~~~~-----~~~~~~a~~~~--~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 157 YSLGVLFYNNG-----ADVLRKATPLA--SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHHHGGGT--TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHhcc--cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 33443333222 22233333322 2222212211 1222334466667777777766666665555543
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.56 E-value=5.7e-13 Score=120.62 Aligned_cols=236 Identities=11% Similarity=0.058 Sum_probs=155.2
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCC---cchhhHHHH
Q 048090 195 RACAGLSAAEFGRQVHAYMIRKCCNLGN---DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN---KDVVLWTSM 268 (447)
Q Consensus 195 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~l 268 (447)
..+...|++++|...+++..+....... ...++..+..+|...|+++.|...+++.......... ....+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 3455677777777777777654222111 2345667777777888888887777766554332211 124466777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc---CCCCChhhHHHHH
Q 048090 269 LGVYGRNGYFKEVIKLYEAMLMN----GTKP-DEVAFVTVISACSHTGQVKLGIEYFEWMVHDY---KLEPGPEHYSCLV 340 (447)
Q Consensus 269 ~~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~ 340 (447)
..+|...|++++|...+++..+. +..+ ...++..+..++...|++++|...+++..... +.+....++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 77888888888888888776552 1111 23466777778888888888888888876510 1122256677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCC---CCchHhHHHHHHHHHhcCC---ccHHHHHHHHHhhhCCCchhHHHHHHHHHH
Q 048090 341 DLLCRAGELDKAWKLINEMLDRGHG---SSSVSMWGALLSACHDCGK---FELGKLAAQKALELDPHNVGIYVMLSNLYA 414 (447)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 414 (447)
..+.+.|++++|...+++..+.... |.....+..+...+...++ +.+|...+++. ...|.....+..++..|.
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHH
Confidence 8888888888888888887764321 3333445666667777777 66666666652 122445567778888899
Q ss_pred hcCChHHHHHHHHHHHH
Q 048090 415 KFCMWDEIGQLRELMKE 431 (447)
Q Consensus 415 ~~g~~~~A~~~~~~m~~ 431 (447)
..|++++|...+++..+
T Consensus 348 ~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999888887764
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.55 E-value=5.1e-13 Score=111.73 Aligned_cols=199 Identities=13% Similarity=-0.019 Sum_probs=148.6
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 048090 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA 299 (447)
Q Consensus 221 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 299 (447)
+.++..+......+...|++++|...|+++... .+ ++...+..+..++...|++++|+..+++..+... -+...
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~ 78 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKL----TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANA 78 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHH
Confidence 345677888888888888899998888877665 33 6667777788888888888888888888887532 24567
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-h-------hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--ch
Q 048090 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG-P-------EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS--SV 369 (447)
Q Consensus 300 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~ 369 (447)
+..+..++...|++++|...+++..+. .|+ . ..|..+...+...|++++|.+.++++++.+ |+ +.
T Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~ 153 (228)
T 4i17_A 79 YIGKSAAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKT 153 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccH
Confidence 778888888888888888888888765 333 4 457777778888888888888888888775 77 67
Q ss_pred HhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC
Q 048090 370 SMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438 (447)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 438 (447)
.++..++.++...| ...++++....+.+...|.... ....+.+++|+..+++..+. .|+.
T Consensus 154 ~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~ 213 (228)
T 4i17_A 154 DALYSLGVLFYNNG-----ADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNR 213 (228)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCC
Confidence 77888888876543 4556777777766655554443 34566789999999999873 4543
No 80
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.53 E-value=2.5e-11 Score=116.25 Aligned_cols=382 Identities=8% Similarity=-0.045 Sum_probs=251.5
Q ss_pred HHHhhhhhhhhhcccccCCcchHHHhhccCC-----CCCCccHHHHHHHHHhCCCh--------hhHHHHHHHHHh-cCC
Q 048090 17 IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLN-----PRNPLPFNVVISDFCRNGSP--------LYALKTFSFMHV-HGI 82 (447)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~m~~-~~~ 82 (447)
...|...+..-.+.+...+.+.+..+|++.. +|++..|..-+....+.++. +...++|+..+. .|.
T Consensus 100 ~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~ 179 (679)
T 4e6h_A 100 ANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAI 179 (679)
T ss_dssp HHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCc
Confidence 4556666666555552223889999999753 27777888888776666554 334578887655 355
Q ss_pred -CCc-hhhHHHHHHHhcc---------CCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHc-------------cCChh
Q 048090 83 -FLD-TYALCSSLTASTS---------VKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK-------------LLLIH 138 (447)
Q Consensus 83 -~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~ 138 (447)
.|+ ...|...+..... .++++.+..+|+.++......-..+|......-.. ..+++
T Consensus 180 ~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~ 259 (679)
T 4e6h_A 180 FEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYM 259 (679)
T ss_dssp TCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHH
Confidence 454 4567776665432 34577889999998853211122333322211111 11223
Q ss_pred hHHHHhcc-------CCC--------------C--c------hhhHHHHHHHHHhcC-------CHHHHHHHHHhhhhcC
Q 048090 139 DAELMFDE-------IPV--------------K--N------SVCANALLSGYCEAK-------LWAGGLELVRLMPALG 182 (447)
Q Consensus 139 ~a~~~~~~-------~~~--------------~--~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~ 182 (447)
.|...+.+ +.. | + ...|...+.---..+ ..+.+..+|++....
T Consensus 260 ~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~- 338 (679)
T 4e6h_A 260 NARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH- 338 (679)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-
Confidence 33343322 110 1 0 133555554332222 134456778887765
Q ss_pred CCCcHhhHHHHHHHHhcCCcHHHHH-HHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcc------
Q 048090 183 LDYDHFTLSALLRACAGLSAAEFGR-QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE------ 255 (447)
Q Consensus 183 ~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------ 255 (447)
++-....|...+..+...|+.+.|. ++++..... ++.+...+...+....+.|++++|.++|+.+.....
T Consensus 339 ~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~---~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~ 415 (679)
T 4e6h_A 339 VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC---IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAAL 415 (679)
T ss_dssp TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 3446667777777777778888996 999999876 556777788889999999999999999997765311
Q ss_pred -cCCCc-----------chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHH
Q 048090 256 -GEINK-----------DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH-TGQVKLGIEYFEW 322 (447)
Q Consensus 256 -~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~ 322 (447)
...+. ....|...+....+.|+.+.|..+|.+..+.-..+....|...+..-.+ .++++.|..+|+.
T Consensus 416 ~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~ 495 (679)
T 4e6h_A 416 MEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLEL 495 (679)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred hhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 01111 2346888888888899999999999999875111123334333322233 3559999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCC
Q 048090 323 MVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGS-SSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401 (447)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 401 (447)
..+.+ +-+...|...++.....|+.+.|..+|++.+.....+ .....|...+..-.+.|+.+.+..+.+++.+..|+
T Consensus 496 ~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 496 GLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99863 4456777888888889999999999999999876211 35567999999999999999999999999999988
Q ss_pred chh
Q 048090 402 NVG 404 (447)
Q Consensus 402 ~~~ 404 (447)
+..
T Consensus 574 ~~~ 576 (679)
T 4e6h_A 574 VNK 576 (679)
T ss_dssp CCH
T ss_pred CcH
Confidence 653
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.52 E-value=1.5e-12 Score=104.78 Aligned_cols=172 Identities=15% Similarity=0.018 Sum_probs=149.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048090 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTV 303 (447)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 303 (447)
...+..+...+...|++++|...|+++... .+.+...+..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 82 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA----DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVL 82 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT----TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 456777888899999999999999876553 45567888999999999999999999999998863 3467788888
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcC
Q 048090 304 ISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383 (447)
Q Consensus 304 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 383 (447)
...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++.+.. |.+..++..++.++...|
T Consensus 83 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 83 GLTYVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcC
Confidence 99999999999999999999875 24467888899999999999999999999999886 888888999999999999
Q ss_pred CccHHHHHHHHHhhhCCCchh
Q 048090 384 KFELGKLAAQKALELDPHNVG 404 (447)
Q Consensus 384 ~~~~a~~~~~~~~~~~~~~~~ 404 (447)
++++|...++++++..|.+..
T Consensus 159 ~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 159 RHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp CHHHHHHHHHHHHHHHHCCCG
T ss_pred CHHHHHHHHHHHHHcCCCchh
Confidence 999999999999998876553
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.51 E-value=1.9e-11 Score=110.65 Aligned_cols=238 Identities=9% Similarity=-0.041 Sum_probs=173.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhhcCC-CC----cHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCC----ChhHH
Q 048090 157 ALLSGYCEAKLWAGGLELVRLMPALGL-DY----DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN----DVFMQ 227 (447)
Q Consensus 157 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 227 (447)
.....+...|++++|+..+++..+... .+ ...++..+...+...|+++.|...+++..+..+.... ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345556788999999999888765310 12 2346777888888999999999999988876433221 24567
Q ss_pred HHHHHHHHhcCChHHHHHHHHhhhhhcccCCC--cchhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 048090 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN--KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM-----NGTKPDEVAF 300 (447)
Q Consensus 228 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~ 300 (447)
+.+..+|...|++++|.+.|+++......... ....++..+..+|...|++++|...+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 78888999999999999999877654322111 1234677888899999999999999998876 33 2236778
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCchHhHHH
Q 048090 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPG---PEHYSCLVDLLCRAGE---LDKAWKLINEMLDRGHGSSSVSMWGA 374 (447)
Q Consensus 301 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~~ 374 (447)
..+...+.+.|++++|...+++..+...-..+ ...+..+...+...|+ +.+|+..+++. +..|.....+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 88888999999999999999998865322112 3345566666777788 77787777763 222445556788
Q ss_pred HHHHHHhcCCccHHHHHHHHHhhh
Q 048090 375 LLSACHDCGKFELGKLAAQKALEL 398 (447)
Q Consensus 375 l~~~~~~~g~~~~a~~~~~~~~~~ 398 (447)
++..|...|++++|...++++++.
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.50 E-value=1.2e-12 Score=126.76 Aligned_cols=168 Identities=11% Similarity=0.097 Sum_probs=148.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 048090 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302 (447)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 302 (447)
+...++.|..+|.+.|++++|++.|+++.+. .+.+..+|..+..+|.+.|++++|+..|++..+.. +-+...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l----~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 4678899999999999999999999987775 55567889999999999999999999999998853 225788999
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHh
Q 048090 303 VISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381 (447)
Q Consensus 303 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 381 (447)
+..++...|++++|++.|++..+. .| +...|..+..+|.+.|++++|++.|++.++.. |++..++..++.++..
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhHHHh
Confidence 999999999999999999999865 55 47889999999999999999999999999987 9999999999999999
Q ss_pred cCCccHHHHHHHHHhhhCC
Q 048090 382 CGKFELGKLAAQKALELDP 400 (447)
Q Consensus 382 ~g~~~~a~~~~~~~~~~~~ 400 (447)
.|++++|.+.++++++..|
T Consensus 158 ~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp TTCCTTHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCh
Confidence 9999999999999887543
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.45 E-value=1.4e-12 Score=112.78 Aligned_cols=234 Identities=15% Similarity=0.134 Sum_probs=157.8
Q ss_pred hcCCcHHHHHHHHHHHHHhhh-----cCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhccc----CCCcchhhHHHH
Q 048090 198 AGLSAAEFGRQVHAYMIRKCC-----NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG----EINKDVVLWTSM 268 (447)
Q Consensus 198 ~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~l 268 (447)
...|++++|...+++.++... ..+....++..+...|...|++++|...++++...... ..+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 355667777777776665311 11223556777888888888888888888866554211 123345678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc-----CCCC-Chhh
Q 048090 269 LGVYGRNGYFKEVIKLYEAMLMN------GTKP-DEVAFVTVISACSHTGQVKLGIEYFEWMVHDY-----KLEP-GPEH 335 (447)
Q Consensus 269 ~~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~ 335 (447)
..+|...|++++|...+++..+. ...| ...++..+...+...|++++|...++++.+.. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888889999998888887664 1112 35677788888889999999999988887531 1122 3567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCCchHhHHHHHHHHHhcCCccHHHH------HHHHHhhhCCCc
Q 048090 336 YSCLVDLLCRAGELDKAWKLINEMLDR-------GHGSSSVSMWGALLSACHDCGKFELGKL------AAQKALELDPHN 402 (447)
Q Consensus 336 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~------~~~~~~~~~~~~ 402 (447)
+..+..+|...|++++|..+++++.+. ...+.....+..+...+...+....+.. .++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 788888999999999999999988764 2234445556655555555444433332 222222233556
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 403 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
..++..++.+|...|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77899999999999999999999998875
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=1.4e-10 Score=104.71 Aligned_cols=205 Identities=11% Similarity=-0.003 Sum_probs=96.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhc----CCC--C-cHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCC--Chh
Q 048090 155 ANALLSGYCEAKLWAGGLELVRLMPAL----GLD--Y-DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN--DVF 225 (447)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 225 (447)
+..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++.....+...+ ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 344555566666666666666555432 111 1 1233444555566666666666666666654222111 123
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CH
Q 048090 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT-----SMLGVYGRNGYFKEVIKLYEAMLMNGTKP---DE 297 (447)
Q Consensus 226 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~m~~~~~~p---~~ 297 (447)
.+..+...+...|++++|...+++..........+ ..+. ..+..+...|++++|...+++.......+ ..
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH--SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 44555556666666666666666543331111111 1111 12223455666666666665554322111 11
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhc---CCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048090 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDY---KLEPGP-EHYSCLVDLLCRAGELDKAWKLINEMLD 361 (447)
Q Consensus 298 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 361 (447)
..+..+...+...|++++|...++...... +..++. ..+..+..++...|+.++|...+++...
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 233444455555566666655555543220 111111 2334444455555555555555555443
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.41 E-value=3.2e-11 Score=102.99 Aligned_cols=189 Identities=11% Similarity=0.008 Sum_probs=123.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC-CH
Q 048090 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD---VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT-KP-DE 297 (447)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p-~~ 297 (447)
+...+..+...+.+.|++++|...|+++... .+.+ ...+..+..+|.+.|++++|...|++..+... .| ..
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 3455555666666677777777777655443 2222 45566666667777777777777777666422 11 13
Q ss_pred HHHHHHHHHHhc--------cCcHHHHHHHHHHHHHhcCCCCC-hhhH-----------------HHHHHHHHHcCCHHH
Q 048090 298 VAFVTVISACSH--------TGQVKLGIEYFEWMVHDYKLEPG-PEHY-----------------SCLVDLLCRAGELDK 351 (447)
Q Consensus 298 ~~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----------------~~l~~~~~~~g~~~~ 351 (447)
..+..+..++.. .|++++|...|+++.+. .|+ .... ..+...|.+.|++++
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEA 166 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 445555556655 67777777777777654 232 2222 556788899999999
Q ss_pred HHHHHHHHHhCCCCCC---chHhHHHHHHHHHhc----------CCccHHHHHHHHHhhhCCCchh---HHHHHHHHHHh
Q 048090 352 AWKLINEMLDRGHGSS---SVSMWGALLSACHDC----------GKFELGKLAAQKALELDPHNVG---IYVMLSNLYAK 415 (447)
Q Consensus 352 A~~~~~~~~~~~~~p~---~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~ 415 (447)
|...|+++++.. |+ ...++..++.++... |++++|...++++++..|+++. +...+...+.+
T Consensus 167 A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~ 244 (261)
T 3qky_A 167 AAVTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQR 244 (261)
T ss_dssp HHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 999999998876 55 445688888888876 8889999999999999998754 34444444444
Q ss_pred cCChH
Q 048090 416 FCMWD 420 (447)
Q Consensus 416 ~g~~~ 420 (447)
.++++
T Consensus 245 ~~~~~ 249 (261)
T 3qky_A 245 LTELE 249 (261)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 44433
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.40 E-value=2.7e-11 Score=105.25 Aligned_cols=177 Identities=10% Similarity=0.015 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCc--chhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCC---CC--CH
Q 048090 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK--DVVLWTSMLGVYGRN-GYFKEVIKLYEAMLMNGT---KP--DE 297 (447)
Q Consensus 226 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~---~p--~~ 297 (447)
+++.+..+|...|++++|+..|++..........+ ...+++.+...|... |++++|+..|++..+... .+ ..
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 44455555555555555555555443321111111 123455566666664 666666666666554210 00 02
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCCh-----hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchH--
Q 048090 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP-----EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVS-- 370 (447)
Q Consensus 298 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-- 370 (447)
.++..+...+...|++++|+..|+++.+...-.+.. ..|..+..++...|++++|...+++.+... |....
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~ 236 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcH
Confidence 345666666667777777777777666431111111 134556666667777777777777766543 32222
Q ss_pred ---hHHHHHHHHH--hcCCccHHHHHHHHHhhhCCCchh
Q 048090 371 ---MWGALLSACH--DCGKFELGKLAAQKALELDPHNVG 404 (447)
Q Consensus 371 ---~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~ 404 (447)
.+..++.++. ..+++++|...|+++...+|....
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 2333444443 344566666666666655554433
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.40 E-value=3.1e-12 Score=99.00 Aligned_cols=143 Identities=10% Similarity=-0.003 Sum_probs=114.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHc
Q 048090 269 LGVYGRNGYFKEVIKLYEAMLMNGTKP-DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRA 346 (447)
Q Consensus 269 ~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 346 (447)
...+...|++++|+..++..... .| +...+..+...|.+.|++++|+..|++..+. .| +...|..+..+|.+.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc
Confidence 34455667888888888877553 33 3445667788888899999999999988865 45 578888899999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHH-HHHHhhhCCCchhHHHHHHHHHHhcCC
Q 048090 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLA-AQKALELDPHNVGIYVMLSNLYAKFCM 418 (447)
Q Consensus 347 g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 418 (447)
|++++|+..|++.++.+ |++..++..++..+.+.|++++|... ++++++.+|.++.+|......+...|+
T Consensus 79 ~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999999998877 88888899999999999998776654 589999999999999888888877775
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.38 E-value=1.4e-10 Score=96.54 Aligned_cols=191 Identities=7% Similarity=-0.037 Sum_probs=118.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHH
Q 048090 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE--VAF 300 (447)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~ 300 (447)
+...+..+...+...|++++|...|+++..... ..+.....+..+..+|.+.|++++|+..|+++.+....... ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 445566677778888888888888887655310 01111346777778888888888888888888775322111 233
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHh---------
Q 048090 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM--------- 371 (447)
Q Consensus 301 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--------- 371 (447)
..+..++...+.. .+ ..|..+...+...|++++|...|+++++.. |++..+
T Consensus 82 ~~~g~~~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~ 141 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----AL-------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVF 141 (225)
T ss_dssp HHHHHHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh-----hh-------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHH
Confidence 3344444331100 00 000011111122334444444444444433 333322
Q ss_pred --------HHHHHHHHHhcCCccHHHHHHHHHhhhCCCch---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 048090 372 --------WGALLSACHDCGKFELGKLAAQKALELDPHNV---GIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434 (447)
Q Consensus 372 --------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 434 (447)
...++..+.+.|++++|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 142 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 142 LKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 24567889999999999999999999998875 6799999999999999999999998887543
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.38 E-value=3.9e-11 Score=102.45 Aligned_cols=171 Identities=12% Similarity=0.111 Sum_probs=144.4
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hh
Q 048090 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD---EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG-PE 334 (447)
Q Consensus 259 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 334 (447)
+.+...+..+...+.+.|++++|...|+++.+.... + ...+..+..++...|++++|...|+++.+...-.|. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 445677778888999999999999999999886422 3 567888899999999999999999999976322233 45
Q ss_pred hHHHHHHHHHH--------cCCHHHHHHHHHHHHhCCCCCCchHhH-----------------HHHHHHHHhcCCccHHH
Q 048090 335 HYSCLVDLLCR--------AGELDKAWKLINEMLDRGHGSSSVSMW-----------------GALLSACHDCGKFELGK 389 (447)
Q Consensus 335 ~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~~~~-----------------~~l~~~~~~~g~~~~a~ 389 (447)
.+..+..++.. .|++++|...|+++++.. |++.... ..++.++...|++++|.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 67778888888 999999999999999886 7766655 66799999999999999
Q ss_pred HHHHHHhhhCCC---chhHHHHHHHHHHhc----------CChHHHHHHHHHHHHc
Q 048090 390 LAAQKALELDPH---NVGIYVMLSNLYAKF----------CMWDEIGQLRELMKEK 432 (447)
Q Consensus 390 ~~~~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~ 432 (447)
..++++++..|. .+..+..++.+|... |++++|...++++.+.
T Consensus 169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 999999999987 456899999999877 8999999999999874
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.38 E-value=1.5e-11 Score=106.14 Aligned_cols=210 Identities=11% Similarity=-0.015 Sum_probs=124.8
Q ss_pred HhhHHHHHHHHhcCCcHHHHHHHHHHHHHhh-----hcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccC----
Q 048090 187 HFTLSALLRACAGLSAAEFGRQVHAYMIRKC-----CNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE---- 257 (447)
Q Consensus 187 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---- 257 (447)
..++..+...+...|++++|...++++.+.. +..+....++..+...|...|++++|...|+++.......
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 4456666666667777777777777666542 1112234566677777777777777777777654432111
Q ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc---
Q 048090 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN------GTKP-DEVAFVTVISACSHTGQVKLGIEYFEWMVHDY--- 327 (447)
Q Consensus 258 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--- 327 (447)
.+....++..+...|...|++++|...+++..+. +..| ...++..+...+...|++++|...++++.+..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1233556777777788888888888888777654 1122 34567777778888888888888887776431
Q ss_pred ---CCCCC-hhhHHHHHHHHHHcCC------HHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 048090 328 ---KLEPG-PEHYSCLVDLLCRAGE------LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE 397 (447)
Q Consensus 328 ---~~~~~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 397 (447)
...+. ...|..+...+...+. +..+...++...... |....++..++.+|...|++++|...++++++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS--PTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11222 2333333333333222 333333333322222 55566788889999999999999999998876
Q ss_pred h
Q 048090 398 L 398 (447)
Q Consensus 398 ~ 398 (447)
.
T Consensus 281 ~ 281 (283)
T 3edt_B 281 N 281 (283)
T ss_dssp T
T ss_pred h
Confidence 4
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.37 E-value=6e-11 Score=89.68 Aligned_cols=130 Identities=25% Similarity=0.282 Sum_probs=105.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHH
Q 048090 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378 (447)
Q Consensus 299 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~ 378 (447)
.+..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|..+++++...+ |.+...+..++..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHH
Confidence 4556667777788888888888887754 13356677778888888888888888888888766 6677778888888
Q ss_pred HHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 379 CHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 379 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
+...|++++|...++++.+..|.+..++..++.++.+.|++++|...++++...
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 888899999999998888888888888888888888999999998888888763
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.36 E-value=3.4e-11 Score=104.58 Aligned_cols=212 Identities=10% Similarity=-0.011 Sum_probs=155.1
Q ss_pred cHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhccc-CCCc-chhhHHHHHHHHHhcCCHH
Q 048090 202 AAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG-EINK-DVVLWTSMLGVYGRNGYFK 279 (447)
Q Consensus 202 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~ 279 (447)
++++|...|.+. +..|...|++++|...|++....... +.++ ...+|+.+..+|.+.|+++
T Consensus 32 ~~~~A~~~~~~a-----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 94 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94 (292)
T ss_dssp HHHHHHHHHHHH-----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 488888887765 34577889999999999877654322 2222 2568899999999999999
Q ss_pred HHHHHHHHHHhCCC---CC--CHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHHcCCH
Q 048090 280 EVIKLYEAMLMNGT---KP--DEVAFVTVISACSHT-GQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGEL 349 (447)
Q Consensus 280 ~a~~~~~~m~~~~~---~p--~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~ 349 (447)
+|+..+++..+... .+ -..++..+...|... |++++|+..|++..+...-..+ ..++..+...+.+.|++
T Consensus 95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 99999998876311 11 145788888899996 9999999999998764211111 35688899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCch-----HhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchh-----HHHHHHHHHH--hcC
Q 048090 350 DKAWKLINEMLDRGHGSSSV-----SMWGALLSACHDCGKFELGKLAAQKALELDPHNVG-----IYVMLSNLYA--KFC 417 (447)
Q Consensus 350 ~~A~~~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~--~~g 417 (447)
++|+..+++........+.. .+|..++.++...|++++|...++++++..|.... .+..++.+|. ..+
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999999999876322221 14788899999999999999999999998887443 3455666664 456
Q ss_pred ChHHHHHHHHHHH
Q 048090 418 MWDEIGQLRELMK 430 (447)
Q Consensus 418 ~~~~A~~~~~~m~ 430 (447)
++++|+..|+++.
T Consensus 255 ~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 255 QLSEHCKEFDNFM 267 (292)
T ss_dssp THHHHHHHHTTSS
T ss_pred HHHHHHHHhccCC
Confidence 7888888776653
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.36 E-value=9.9e-12 Score=120.93 Aligned_cols=177 Identities=12% Similarity=-0.057 Sum_probs=149.4
Q ss_pred HhcCChHHHHHHHHhhhhh----cccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 048090 235 GKCGLVTKALQVFNLAGHR----LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHT 310 (447)
Q Consensus 235 ~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 310 (447)
...|++++|++.++++... .....+.+...+..+..++.+.|++++|...|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 7789999999999976510 001145567788999999999999999999999998864 23677888888999999
Q ss_pred CcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHH
Q 048090 311 GQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389 (447)
Q Consensus 311 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 389 (447)
|++++|...|+++.+. .| +...|..+..++.+.|++++ ++.|+++++.+ |++..+|..++.++...|++++|.
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999865 45 47788899999999999999 99999999887 889999999999999999999999
Q ss_pred HHHHHHhhhCCCchhHHHHHHHHHHhcCC
Q 048090 390 LAAQKALELDPHNVGIYVMLSNLYAKFCM 418 (447)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 418 (447)
..++++++.+|.+..++..++.++...|+
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999999999999999999877665
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.35 E-value=4.5e-10 Score=95.72 Aligned_cols=249 Identities=9% Similarity=-0.017 Sum_probs=163.9
Q ss_pred HHccCChhhHHHHhccCCCCch-hhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHH
Q 048090 131 YAKLLLIHDAELMFDEIPVKNS-VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209 (447)
Q Consensus 131 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 209 (447)
..-.|.+..++.-..++...+. ..---+.++|...|++... + .-.|....+..+...+ ..+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~------~---~~~~~~~a~~~la~~~-~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ------D---PTSKLGKVLDLYVQFL-DTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC------C---SSSTTHHHHHHHHHHH-TTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC------C---CCCHHHHHHHHHHHHh-ccc----HHHH
Confidence 3345666666665555442222 2223344667666665531 1 1133333443333333 222 6677
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048090 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI-NKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288 (447)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 288 (447)
+++.... + .++......+..++...|++++|++++.+.... +. .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 89 l~~l~~~--~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~---~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 89 LENLLKD--K-QNSPYELYLLATAQAILGDLDKSLETCVEGIDN---DEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp HHHTTTT--S-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS---SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhc--C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7766654 2 345555667888888999999999999854221 11 246677888899999999999999999999
Q ss_pred HhCCCCC-----CHHHHHHHHHHH--hccC--cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048090 289 LMNGTKP-----DEVAFVTVISAC--SHTG--QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359 (447)
Q Consensus 289 ~~~~~~p-----~~~~~~~ll~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 359 (447)
.+. .| +..+...++.++ ...| ++..|..+|+++... .|+..+-..++.++.+.|++++|.+.++.+
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 874 56 356666666663 3334 899999999998754 455333344444888999999999999877
Q ss_pred HhCC-----C---CCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHH
Q 048090 360 LDRG-----H---GSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406 (447)
Q Consensus 360 ~~~~-----~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 406 (447)
.+.. . .|+++.+...++......|+ +|.++++++.+..|+++.+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 6541 0 27788888677777777786 78999999999999888543
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.34 E-value=6.3e-10 Score=94.82 Aligned_cols=242 Identities=7% Similarity=-0.062 Sum_probs=170.1
Q ss_pred HHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCC
Q 048090 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL 239 (447)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 239 (447)
+-..-.|++..++.-..++... .++ .....+.+++...|++.... ...|....+..+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~--~~~-~~~~~~~Rs~iAlg~~~~~~-----------~~~~~~~a~~~la~-~~~~~- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKV--TDN-TLLFYKAKTLLALGQYQSQD-----------PTSKLGKVLDLYVQ-FLDTK- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCC--CCH-HHHHHHHHHHHHTTCCCCCC-----------SSSTTHHHHHHHHH-HHTTT-
T ss_pred HHHHHhhHHHHHHHHHHhcCcc--chH-HHHHHHHHHHHHcCCCccCC-----------CCCHHHHHHHHHHH-Hhccc-
Confidence 4445678999888755444321 222 23334557777777765321 12233334443333 33322
Q ss_pred hHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCcHHHHHH
Q 048090 240 VTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK-PDEVAFVTVISACSHTGQVKLGIE 318 (447)
Q Consensus 240 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~ 318 (447)
|+..|++.... .+++..++..+..++...|++++|++++.+.+..+.. -+...+..++..+.+.|+++.|.+
T Consensus 85 ---a~~~l~~l~~~----~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 85 ---NIEELENLLKD----KQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAST 157 (310)
T ss_dssp ---CCHHHHHTTTT----SCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---HHHHHHHHHhc----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 67777744332 2455666678889999999999999999998876542 356778888999999999999999
Q ss_pred HHHHHHHhcCCCC-----ChhhHHHHHHHHH--HcC--CHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHH
Q 048090 319 YFEWMVHDYKLEP-----GPEHYSCLVDLLC--RAG--ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389 (447)
Q Consensus 319 ~~~~~~~~~~~~~-----~~~~~~~l~~~~~--~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 389 (447)
.+++|.+. .| +..+...|..++. ..| ++.+|..+|+++.... |+ ...-..+..++...|++++|.
T Consensus 158 ~l~~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~-~~~~~lLln~~~~~g~~~eAe 231 (310)
T 3mv2_B 158 IFDNYTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PT-WKTQLGLLNLHLQQRNIAEAQ 231 (310)
T ss_dssp HHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CS-HHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CC-cccHHHHHHHHHHcCCHHHHH
Confidence 99999754 66 3555566666633 334 8999999999998764 53 222334444899999999999
Q ss_pred HHHHHHhhh----------CCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 390 LAAQKALEL----------DPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 390 ~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
..++.+.+. +|.++.++..++......|+ +|.++++++.+.
T Consensus 232 ~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 232 GIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 999988776 48899999888877888887 889999999873
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.31 E-value=1.1e-11 Score=95.92 Aligned_cols=129 Identities=15% Similarity=0.023 Sum_probs=110.1
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHh
Q 048090 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPG-PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381 (447)
Q Consensus 303 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 381 (447)
|...+...|++++|+..++.... ..|+ ...+..+...|.+.|++++|++.|++.++.+ |++..+|..++.++..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYEL 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 44556778999999999998863 3454 6667788999999999999999999999987 9999999999999999
Q ss_pred cCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHH-HHHHHHcCCCCCC
Q 048090 382 CGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQL-RELMKEKGLKKDV 438 (447)
Q Consensus 382 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~~~~p~~ 438 (447)
.|++++|...|+++++.+|.++.++..++.+|.+.|++++|.+. +++..+ +.|+-
T Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~ 133 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGS 133 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTC
T ss_pred cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCC
Confidence 99999999999999999999999999999999999999877665 577776 45553
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.30 E-value=1.4e-10 Score=100.41 Aligned_cols=167 Identities=7% Similarity=-0.031 Sum_probs=133.5
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHH-
Q 048090 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS- 337 (447)
Q Consensus 259 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 337 (447)
+.+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...++++... .|+.....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~ 189 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGL 189 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHH
Confidence 4455667777788888899999999998888753 225677888888888899999999998888644 45543332
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCc--hhHHHHHHHHHHh
Q 048090 338 CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN--VGIYVMLSNLYAK 415 (447)
Q Consensus 338 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 415 (447)
.....+...++.++|...+++..... |++..++..++.++...|++++|...++++++.+|.+ ...+..++..|..
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 22334667788888899999988877 8888899999999999999999999999999999887 8889999999999
Q ss_pred cCChHHHHHHHHHHHH
Q 048090 416 FCMWDEIGQLRELMKE 431 (447)
Q Consensus 416 ~g~~~~A~~~~~~m~~ 431 (447)
.|+.++|...+++...
T Consensus 268 ~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 268 LGTGDALASXYRRQLY 283 (287)
T ss_dssp HCTTCHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHH
Confidence 9999999888877653
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.30 E-value=3.4e-09 Score=91.29 Aligned_cols=226 Identities=12% Similarity=0.090 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcC--ChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHH----Hhc--
Q 048090 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG--LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY----GRN-- 275 (447)
Q Consensus 204 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~-- 275 (447)
++|.++++.++... +.+..+|+.-..++...| ++++++++++.+... .|.+..+|+.-...+ ...
T Consensus 50 ~~aL~~t~~~L~~n---P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~----nPk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 50 ERALHITELGINEL---ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD----NEKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp HHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH----CTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHC---cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH----CcccHHHHHHHHHHHHHHHHhccc
Confidence 46666666666652 224555666666666666 677777777665554 444555565544444 333
Q ss_pred -CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC----
Q 048090 276 -GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK--LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE---- 348 (447)
Q Consensus 276 -g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 348 (447)
+++++++.+++++.+...+ +..+|+.-.-.+...|.++ ++++.++++.+.. +-|...|+.-...+.+.|+
T Consensus 123 ~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchh
Confidence 5677777777777765422 5666666655666666666 7777777777651 3356666665555656665
Q ss_pred --HHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccH-HHHHHHHHhhhC---CCchhHHHHHHHHHHhcCChHHH
Q 048090 349 --LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFEL-GKLAAQKALELD---PHNVGIYVMLSNLYAKFCMWDEI 422 (447)
Q Consensus 349 --~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A 422 (447)
++++++.+++++..+ |.+..+|+.+...+.+.|+... +..+..++.+.+ |.++.++..++.+|.+.|+.++|
T Consensus 200 ~~~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 788888888888877 8888888888888888887444 556777777665 77888888888888888888889
Q ss_pred HHHHHHHHHcCCCCCCcccc
Q 048090 423 GQLRELMKEKGLKKDVGCSW 442 (447)
Q Consensus 423 ~~~~~~m~~~~~~p~~~~~~ 442 (447)
.++++.+.+ .+.|-...||
T Consensus 278 ~~~~~~l~~-~~Dpir~~yW 296 (306)
T 3dra_A 278 RTVYDLLKS-KYNPIRSNFW 296 (306)
T ss_dssp HHHHHHHHH-TTCGGGHHHH
T ss_pred HHHHHHHHh-ccChHHHHHH
Confidence 888888764 3555555554
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.28 E-value=3.2e-10 Score=85.53 Aligned_cols=133 Identities=24% Similarity=0.344 Sum_probs=97.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 048090 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343 (447)
Q Consensus 264 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 343 (447)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45566667777777777777777776653 235566667777777777888888888777654 133466677777778
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCC
Q 048090 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401 (447)
Q Consensus 344 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 401 (447)
...|++++|...++++.... |.+..++..++.++...|++++|...++++++..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 88888888888888887765 666777788888888888888888888888877764
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.28 E-value=4.3e-11 Score=95.42 Aligned_cols=160 Identities=9% Similarity=0.024 Sum_probs=91.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHH-HH
Q 048090 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL-LC 344 (447)
Q Consensus 266 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 344 (447)
......+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...++++... .|+...+..+... +.
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHH
Confidence 334444455555555555555544321 113344445555555555555555555554432 2222222111111 11
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCc--hhHHHHHHHHHHhcCChHHH
Q 048090 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN--VGIYVMLSNLYAKFCMWDEI 422 (447)
Q Consensus 345 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A 422 (447)
..+...+|...+++.++.. |++..++..++.++...|++++|...++++++.+|.. ...+..++.++...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2222234667777777665 7777777777778888888888888888877777653 55777777777778888877
Q ss_pred HHHHHHHHH
Q 048090 423 GQLRELMKE 431 (447)
Q Consensus 423 ~~~~~~m~~ 431 (447)
...|++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 102
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.26 E-value=7.3e-11 Score=90.75 Aligned_cols=103 Identities=9% Similarity=-0.034 Sum_probs=82.8
Q ss_pred CCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHH
Q 048090 329 LEPG-PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407 (447)
Q Consensus 329 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 407 (447)
+.|+ ...+..+...+.+.|++++|...|++++..+ |.+..+|..++.++...|++++|...|+++++.+|+++.+|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 3443 5566777777888888888888888888776 888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC
Q 048090 408 MLSNLYAKFCMWDEIGQLRELMKEKG 433 (447)
Q Consensus 408 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 433 (447)
.++.+|...|++++|+..|++..+..
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88888888888888888888887643
No 103
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.25 E-value=9.6e-11 Score=87.39 Aligned_cols=110 Identities=14% Similarity=0.054 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHH
Q 048090 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377 (447)
Q Consensus 298 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~ 377 (447)
..+......+.+.|++++|+..|++.++. -+.+...|..+..+|.+.|++++|+..+++.++.+ |++..+|..++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHH
Confidence 34555555666666666666666666543 12235556666666666666666666666666654 556666666666
Q ss_pred HHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHH
Q 048090 378 ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411 (447)
Q Consensus 378 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 411 (447)
++...|++++|...|+++++.+|.+..++..+..
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 6666666666666666666666666665555543
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.25 E-value=1.7e-10 Score=110.23 Aligned_cols=165 Identities=12% Similarity=-0.028 Sum_probs=125.4
Q ss_pred cCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHH
Q 048090 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316 (447)
Q Consensus 237 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 316 (447)
.|++++|.+.|+++... .+.+...|..+...+.+.|++++|...+++..+.. +.+...+..+..++...|++++|
T Consensus 2 ~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH----RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 47889999999876554 45567888899999999999999999999998864 23577888888899999999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhc---CCccHHHHHHH
Q 048090 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC---GKFELGKLAAQ 393 (447)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~ 393 (447)
.+.+++..+. .+.+...+..+..+|.+.|++++|.+.+++..+.. |++..++..++.++... |++++|...++
T Consensus 77 ~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 77 AVLLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVR 152 (568)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 9999999865 13357788889999999999999999999998876 88888899999999999 99999999999
Q ss_pred HHhhhCCCchhHHHHHH
Q 048090 394 KALELDPHNVGIYVMLS 410 (447)
Q Consensus 394 ~~~~~~~~~~~~~~~l~ 410 (447)
++++.+|.+...+..+.
T Consensus 153 ~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 153 AAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHTCCCSCHHHHTT
T ss_pred HHHhcCCcccChHHHhC
Confidence 99999998887777665
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.22 E-value=1.1e-09 Score=106.51 Aligned_cols=173 Identities=10% Similarity=-0.035 Sum_probs=145.1
Q ss_pred hcCCcHHHHHHHHHHHH--------HhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHH
Q 048090 198 AGLSAAEFGRQVHAYMI--------RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269 (447)
Q Consensus 198 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 269 (447)
...|++++|.+.+++.. +. .+.+...+..+..++...|++++|...|+++... .+.+...|..+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg 474 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD---FSESVELPLMEVRALLDLGDVAKATRKLDDLAER----VGWRWRLVWYRA 474 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C---CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----HCCCHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc---cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CcchHHHHHHHH
Confidence 67899999999999988 43 3446778889999999999999999999987765 556778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCC
Q 048090 270 GVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGE 348 (447)
Q Consensus 270 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 348 (447)
.++...|++++|...|++..+... -+...+..+..++...|++++ ...|+++.+. .| +...|..+..++.+.|+
T Consensus 475 ~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~ 549 (681)
T 2pzi_A 475 VAELLTGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGD 549 (681)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCC
Confidence 999999999999999999988642 256778888899999999999 9999999865 44 57888999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCC
Q 048090 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384 (447)
Q Consensus 349 ~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 384 (447)
+++|.+.|+++++.+ |.+..++..++.++...++
T Consensus 550 ~~~A~~~~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 550 RVGAVRTLDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 999999999998877 8888889999999877665
No 106
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.21 E-value=3.9e-08 Score=84.71 Aligned_cols=238 Identities=7% Similarity=-0.024 Sum_probs=185.4
Q ss_pred HhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCC--cHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHH----Hh
Q 048090 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLS--AAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY----GK 236 (447)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~ 236 (447)
......++|+++++++...+ +-....++.--.++...+ +++++.+.++.++... +.+..+|+.-...+ ..
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n---Pk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN---EKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC---TTCCHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC---cccHHHHHHHHHHHHHHHHh
Confidence 34445578999999988864 334455676667777777 9999999999999873 34566666655555 45
Q ss_pred c---CChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 048090 237 C---GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK--EVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311 (447)
Q Consensus 237 ~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 311 (447)
. +++++++.+++++... .+.+..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+...+
T Consensus 120 l~~~~~~~~EL~~~~~~l~~----~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSS----DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKK 194 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSG
T ss_pred ccccCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 5 7899999999988776 6778889998888888889888 999999999987644 7777777666666767
Q ss_pred c------HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCH-HHHHHHHHHHHhCC-CCCCchHhHHHHHHHHHhcC
Q 048090 312 Q------VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGEL-DKAWKLINEMLDRG-HGSSSVSMWGALLSACHDCG 383 (447)
Q Consensus 312 ~------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g 383 (447)
. ++++++.+++++.. -+-|...|+.+...+.+.|+. +++..+..++...+ ..|.+..++..++.++.+.|
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred ccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 6 89999999999865 244688888888888888884 44666777766543 23667888999999999999
Q ss_pred CccHHHHHHHHHhh-hCCCchhHHHHHHH
Q 048090 384 KFELGKLAAQKALE-LDPHNVGIYVMLSN 411 (447)
Q Consensus 384 ~~~~a~~~~~~~~~-~~~~~~~~~~~l~~ 411 (447)
+.++|.++++.+.+ .+|.....|...+.
T Consensus 273 ~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 273 KYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp CHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 99999999999997 78998888887654
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.20 E-value=6.1e-10 Score=82.98 Aligned_cols=106 Identities=11% Similarity=0.167 Sum_probs=94.3
Q ss_pred CCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHH
Q 048090 329 LEPG-PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407 (447)
Q Consensus 329 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 407 (447)
+.|+ ...+......|.+.|++++|++.|++.++.+ |.+..+|..++.++...|++++|...++++++.+|.++.+|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 4554 5667778889999999999999999999887 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCC
Q 048090 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438 (447)
Q Consensus 408 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 438 (447)
.++.+|...|++++|++.|++..+ +.|+-
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~--l~P~~ 114 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQ--VDPSN 114 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--HCcCC
Confidence 999999999999999999999887 45553
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.20 E-value=6.1e-10 Score=106.44 Aligned_cols=165 Identities=12% Similarity=-0.038 Sum_probs=118.6
Q ss_pred CCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHH
Q 048090 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279 (447)
Q Consensus 200 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 279 (447)
.|++++|.+.+++..+. .+.+...+..+...+...|++++|.+.|++.... .+.+...+..+..+|...|+++
T Consensus 2 ~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~ 74 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH---RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL----HPGHPEAVARLGRVRWTQQRHA 74 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT----STTCHHHHHHHHHHHHHTTCHH
T ss_pred CccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHH
Confidence 46788899999988875 4556788888999999999999999999877664 4556778888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc---CCHHHHHHHH
Q 048090 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA---GELDKAWKLI 356 (447)
Q Consensus 280 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~ 356 (447)
+|...+++..+.. +.+...+..+..++...|++++|.+.|++..+. .+.+...+..+..++... |+.++|.+.+
T Consensus 75 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 75 EAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 9999999988864 235778888888999999999999999998865 133477788888888888 9999999999
Q ss_pred HHHHhCCCCCCchHhHHHHH
Q 048090 357 NEMLDRGHGSSSVSMWGALL 376 (447)
Q Consensus 357 ~~~~~~~~~p~~~~~~~~l~ 376 (447)
++.++.+ |.+...|..+.
T Consensus 152 ~~al~~~--p~~~~~~~~l~ 169 (568)
T 2vsy_A 152 RAAVAQG--VGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHT--CCCSCHHHHTT
T ss_pred HHHHhcC--CcccChHHHhC
Confidence 9998887 66665555444
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.20 E-value=2.2e-09 Score=89.18 Aligned_cols=208 Identities=6% Similarity=-0.086 Sum_probs=117.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCC-C-cHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHH
Q 048090 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLD-Y-DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230 (447)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 230 (447)
..+..+...+...|++++|+..|+++.+.... | ....+..+..++.+.|++++|...|+++++..|+.+.-...+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34445556666777777777777776654211 1 123455566666777777777777777776633211111233333
Q ss_pred HHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhc
Q 048090 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV-AFVTVISACSH 309 (447)
Q Consensus 231 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~ 309 (447)
..++...|.. .+ ..|..+...+...|++++|...|+++.+. .|+.. .......
T Consensus 85 g~~~~~~~~~-----~~---------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~---- 138 (225)
T 2yhc_A 85 GLTNMALDDS-----AL---------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR---- 138 (225)
T ss_dssp HHHHHHHHC----------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----
T ss_pred HHHHHhhhhh-----hh---------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----
Confidence 3343332210 00 11222233344567778888888887774 33321 1111100
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCch---HhHHHHHHHHHhcCCcc
Q 048090 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV---SMWGALLSACHDCGKFE 386 (447)
Q Consensus 310 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~ 386 (447)
...+...+. .....+...|.+.|++++|...|+++++.. |++. .++..++.++.+.|+++
T Consensus 139 ------l~~~~~~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 139 ------LVFLKDRLA---------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp ------HHHHHHHHH---------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred ------HHHHHHHHH---------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcH
Confidence 000011110 112345677889999999999999998876 6554 46888999999999999
Q ss_pred HHHHHHHHHhhhCCCch
Q 048090 387 LGKLAAQKALELDPHNV 403 (447)
Q Consensus 387 ~a~~~~~~~~~~~~~~~ 403 (447)
+|...++.+....|.+.
T Consensus 202 ~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 202 QAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHhhCCCch
Confidence 99999998888777654
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.19 E-value=1.6e-09 Score=93.71 Aligned_cols=168 Identities=10% Similarity=-0.045 Sum_probs=132.2
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 048090 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA 299 (447)
Q Consensus 220 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 299 (447)
.+.+...+..+...+...|++++|...|+++... .|.+...+..+...+.+.|++++|...++++... .|+...
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~ 186 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQL----SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRY 186 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh----CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHH
Confidence 3445666777888888899999999999877665 5556778888888999999999999999888764 344433
Q ss_pred HHH-HHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc--hHhHHHHH
Q 048090 300 FVT-VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSS--VSMWGALL 376 (447)
Q Consensus 300 ~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~~l~ 376 (447)
... ....+...++.+.|...+++.... -+.+...+..+...+...|++++|...++++++.. |++ ..++..++
T Consensus 187 ~~~~~~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~~~~~a~~~l~ 262 (287)
T 3qou_A 187 QGLVAQIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXD--LTAADGQTRXTFQ 262 (287)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTGGGGHHHHHHH
T ss_pred HHHHHHHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cccccchHHHHHH
Confidence 222 222356777788888889888865 13457888899999999999999999999999887 665 77899999
Q ss_pred HHHHhcCCccHHHHHHHHHhh
Q 048090 377 SACHDCGKFELGKLAAQKALE 397 (447)
Q Consensus 377 ~~~~~~g~~~~a~~~~~~~~~ 397 (447)
..+...|+.++|...+++.+.
T Consensus 263 ~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 263 EILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999988764
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.19 E-value=3.7e-09 Score=86.84 Aligned_cols=176 Identities=9% Similarity=-0.031 Sum_probs=129.5
Q ss_pred HHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC----cHHHHH
Q 048090 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG----QVKLGI 317 (447)
Q Consensus 242 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~ 317 (447)
+|.+.|++..+ ..+...+..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|.
T Consensus 4 eA~~~~~~aa~------~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 4 EPGSQYQQQAE------AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp CTTHHHHHHHH------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred hHHHHHHHHHH------CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHH
Confidence 34555554433 2456677777778888888888888888887765 45666667777776 6 788888
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCC--CchHhHHHHHHHHHh----cCCccH
Q 048090 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCR----AGELDKAWKLINEMLDRGHGS--SSVSMWGALLSACHD----CGKFEL 387 (447)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p--~~~~~~~~l~~~~~~----~g~~~~ 387 (447)
.+|++..+. -+...+..|...|.. .+++++|..+|++..+.+ | ..+.++..|...|.. .+++++
T Consensus 74 ~~~~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 74 QLAEKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 888888643 356667777777776 778888888888888876 4 226668888888887 778888
Q ss_pred HHHHHHHHhhhCCCchhHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHcCC
Q 048090 388 GKLAAQKALELDPHNVGIYVMLSNLYAKF-C-----MWDEIGQLRELMKEKGL 434 (447)
Q Consensus 388 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 434 (447)
|...++++.+. |.++..+..|+.+|... | ++++|...+++..+.|.
T Consensus 148 A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 148 ASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88888888877 55666788888887654 3 78888888888887764
No 112
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.19 E-value=9.7e-10 Score=90.11 Aligned_cols=167 Identities=12% Similarity=0.020 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHH----------------HHHHHHhcCCHHHHHHHHHH
Q 048090 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS----------------MLGVYGRNGYFKEVIKLYEA 287 (447)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~a~~~~~~ 287 (447)
...+......+...|++++|...|+++... .|.+...|.. +..+|.+.|++++|...|++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 79 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL----NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE 79 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 334455566777888888888888876554 3334455555 56666666666666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCC--HHHHHHHHHHHHhCCC
Q 048090 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGE--LDKAWKLINEMLDRGH 364 (447)
Q Consensus 288 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~ 364 (447)
..+.. +-+...+..+..++...|++++|...|+++.+. .| +...|..+..+|...|+ .+.+...++.....
T Consensus 80 al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-- 153 (208)
T 3urz_A 80 LLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP-- 153 (208)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC--
T ss_pred HHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC--
Confidence 66543 124555666666666666666666666666643 33 35555556555544432 23344444444321
Q ss_pred CCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCC
Q 048090 365 GSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401 (447)
Q Consensus 365 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 401 (447)
++....+..++.++...|++++|...|+++++..|.
T Consensus 154 -~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 154 -TKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp -CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred -CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 112223444555555666666666666666666664
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.19 E-value=9.8e-10 Score=87.45 Aligned_cols=163 Identities=11% Similarity=0.038 Sum_probs=122.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048090 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVIS 305 (447)
Q Consensus 226 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 305 (447)
....+...+...|++++|...|+++... .|.+...+..+..++...|++++|...+++..... |+...+..+..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~ 81 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE----LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAK 81 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH----HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHH
Confidence 4556677788889999999999876654 45567788888888999999999999998876643 34433322221
Q ss_pred H-HhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcC
Q 048090 306 A-CSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383 (447)
Q Consensus 306 ~-~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 383 (447)
. +...+....|...+++..+. .| +...+..+..++...|++++|...++++++..-.+.+..++..++.++...|
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred HHHHhhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 1 12222334578888888865 45 5888899999999999999999999999988722223557899999999999
Q ss_pred CccHHHHHHHHHhh
Q 048090 384 KFELGKLAAQKALE 397 (447)
Q Consensus 384 ~~~~a~~~~~~~~~ 397 (447)
+.++|...|++++.
T Consensus 159 ~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 159 QGNAIASKYRRQLY 172 (176)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999998764
No 114
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.18 E-value=3.2e-08 Score=92.02 Aligned_cols=368 Identities=9% Similarity=-0.016 Sum_probs=206.5
Q ss_pred HHhhhhhhhhhcccccCCcchHHHhhccCC--CCCCccHHHHHHHHHhCCC-hhhHHHHHHHHHhc-CCC-CchhhHHHH
Q 048090 18 IFQSRLMLPYTTCRHKKNLGTLTNCLKFLN--PRNPLPFNVVISDFCRNGS-PLYALKTFSFMHVH-GIF-LDTYALCSS 92 (447)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~-~~~-p~~~~~~~l 92 (447)
.+|...+..|-. ++.+.+..+|++.. .|++..|...+....+.++ .+....+|+..+.. |.. ++...|...
T Consensus 16 ~vyer~l~~~P~----~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 16 AIMEHARRLYMS----KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHHT----TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHCCC----CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 455555555543 35667777776643 2566666666666555542 34555666665543 322 244555555
Q ss_pred HHHhcc----CCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCH
Q 048090 93 LTASTS----VKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168 (447)
Q Consensus 93 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (447)
+..+.. .++++.+..+|+..++.....-...|...... ........+..++ ... .+.+
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~---------------~~~--~~~y 153 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIV---------------GDT--LPIF 153 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHH---------------HHH--HHHH
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHH---------------HHH--hHHH
Confidence 554432 34566666777776652111111122211111 1111111111111 111 1223
Q ss_pred HHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcC----Cc---HHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChH
Q 048090 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGL----SA---AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241 (447)
Q Consensus 169 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 241 (447)
..|..+++++...--..+...|...+.--... .+ .+.+..+|++++.. .+.+...|...+..+.+.|+++
T Consensus 154 ~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~---~p~~~~lW~~ya~~~~~~~~~~ 230 (493)
T 2uy1_A 154 QSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS---FYYAEEVYFFYSEYLIGIGQKE 230 (493)
T ss_dssp HHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHH
Confidence 33444444333210001222344333332211 11 34567889988886 4456788888888889999999
Q ss_pred HHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCC---CHHHHHHHHHHHhc
Q 048090 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG---------TKP---DEVAFVTVISACSH 309 (447)
Q Consensus 242 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---------~~p---~~~~~~~ll~~~~~ 309 (447)
+|..+|++.... |.+...|.. |....+.++. ++.+.+.- ..+ ....|...+....+
T Consensus 231 ~ar~i~erAi~~-----P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 231 KAKKVVERGIEM-----SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp HHHHHHHHHHHH-----CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-----CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH
Confidence 999999976553 233333322 2222111222 22222210 011 12456666776667
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHH
Q 048090 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG-ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388 (447)
Q Consensus 310 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 388 (447)
.+..+.|..+|+++ .. . ..+...|......-...+ +.+.|..+|+..++.. |+++..+...+......|+.+.|
T Consensus 299 ~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~a 373 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENA 373 (493)
T ss_dssp HHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHH
Confidence 88899999999998 32 1 234445543333333333 6999999999998865 66666677788888889999999
Q ss_pred HHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 389 KLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
..+|+++ +.....|...+..-...|+.+.+.++++++.+
T Consensus 374 R~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 374 RALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999987 34678899999888888999999998888875
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.16 E-value=3.2e-09 Score=92.80 Aligned_cols=230 Identities=9% Similarity=-0.025 Sum_probs=150.9
Q ss_pred hcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhc-CCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHH
Q 048090 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG-LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242 (447)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 242 (447)
..|++++|.+++++..+.. +.. +.+ .++++.|...|... ...|...|++++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a-----------------~~~~~~~g~~~~ 54 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA-----------------AVAFKNAKQLEQ 54 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH-----------------HHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHH
Confidence 3567788888888776531 110 112 46666666666554 345667788888
Q ss_pred HHHHHHhhhhhcccCCCc--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCC--HHHHHHHHHHHhccCcHHH
Q 048090 243 ALQVFNLAGHRLEGEINK--DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG---TKPD--EVAFVTVISACSHTGQVKL 315 (447)
Q Consensus 243 A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~p~--~~~~~~ll~~~~~~~~~~~ 315 (447)
|...|.++.........+ -..+|+.+..+|.+.|++++|+..|++..+.- -.|. ..++..+...|.. |++++
T Consensus 55 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~ 133 (307)
T 2ifu_A 55 AKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSK 133 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHH
Confidence 888887665542221111 13467778888888888888888888765431 1121 3567777788877 99999
Q ss_pred HHHHHHHHHHhcCCCC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCCchHhHHHHHHHHHhcCCccH
Q 048090 316 GIEYFEWMVHDYKLEP----GPEHYSCLVDLLCRAGELDKAWKLINEMLDRG----HGSSSVSMWGALLSACHDCGKFEL 387 (447)
Q Consensus 316 a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~ 387 (447)
|+..|++......-.. ...++..+...|.+.|++++|+..+++.+... ..+....++..++.++...|++++
T Consensus 134 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 134 AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA 213 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 9999888765321111 14567788888999999999999998887642 111112356777778888899999
Q ss_pred HHHHHHHHhhhCCCch-----hHHHHHHHHHHhcCChHHHHH
Q 048090 388 GKLAAQKALELDPHNV-----GIYVMLSNLYAKFCMWDEIGQ 424 (447)
Q Consensus 388 a~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~ 424 (447)
|...+++++ ..|... .....++.++ ..|+.+.+.+
T Consensus 214 A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 214 AQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999998 777532 2344555555 5677666655
No 116
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.16 E-value=2.2e-10 Score=88.13 Aligned_cols=101 Identities=10% Similarity=-0.078 Sum_probs=48.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHH
Q 048090 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378 (447)
Q Consensus 299 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~ 378 (447)
.+..+...+...|++++|...|+++... -+.+...|..+..+|...|++++|...|++++..+ |++..++..++.+
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHH
Confidence 3334444444555555555555554432 11234444444445555555555555555554443 4444445555555
Q ss_pred HHhcCCccHHHHHHHHHhhhCCCch
Q 048090 379 CHDCGKFELGKLAAQKALELDPHNV 403 (447)
Q Consensus 379 ~~~~g~~~~a~~~~~~~~~~~~~~~ 403 (447)
+...|++++|...|+++++..|.++
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5555555555555555555444443
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.15 E-value=1.5e-09 Score=89.36 Aligned_cols=134 Identities=9% Similarity=-0.012 Sum_probs=108.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048090 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341 (447)
Q Consensus 262 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 341 (447)
...+..+...+...|++++|...|++. +.|+...+..+..++...|++++|...|++.... .+.+...+..+..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHH
Confidence 344566777888889999999988877 3567788888888888999999999999888765 1345778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCch----------------HhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCch
Q 048090 342 LLCRAGELDKAWKLINEMLDRGHGSSSV----------------SMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403 (447)
Q Consensus 342 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 403 (447)
+|...|++++|...+++..+.. |.+. .++..++.++...|++++|...++++++..|.+.
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQL--RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTT--TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHcccHHHHHHHHHHHHHhC--CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 8999999999999999888765 5444 6788888899999999999999999998888763
No 118
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.14 E-value=5e-08 Score=90.71 Aligned_cols=326 Identities=8% Similarity=-0.114 Sum_probs=190.7
Q ss_pred CChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCc-hhHHHHHHHHHHHc-CC-CCchhhHHHHHHHHH----ccCCh
Q 048090 65 GSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKD-ARFGKQVQAHVTKS-GW-LSSVFVGSALIDLYA----KLLLI 137 (447)
Q Consensus 65 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~g~~ 137 (447)
|+++.+..+|++.+.. .|+...|...+....+.++ .+....+|+..+.. |. +.+...|...+..+. ..+++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7888888888888774 4688888777776655553 35566677776653 42 235566666665543 23456
Q ss_pred hhHHHHhccCCC-CchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 048090 138 HDAELMFDEIPV-KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216 (447)
Q Consensus 138 ~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 216 (447)
+.+.++|++... |. ..+..+-. .|..+... .+..+...++.... +.+..|..+++.+...
T Consensus 106 ~~vR~iy~rAL~~P~-~~~~~lw~-------------~Y~~fE~~---~~~~~~~~~~~~~~--~~y~~ar~~y~~~~~~ 166 (493)
T 2uy1_A 106 EKIRNGYMRALQTPM-GSLSELWK-------------DFENFELE---LNKITGKKIVGDTL--PIFQSSFQRYQQIQPL 166 (493)
T ss_dssp HHHHHHHHHHHTSCC-TTHHHHHH-------------HHHHHHHH---HCHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh-hhHHHHHH-------------HHHHHHHH---hccccHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 667777766542 21 11111111 11111111 01111111111111 2344555555555543
Q ss_pred hhcCCCChhHHHHHHHHHHhcC--C-----hHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048090 217 CCNLGNDVFMQSSLIEMYGKCG--L-----VTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289 (447)
Q Consensus 217 ~~~~~~~~~~~~~l~~~~~~~g--~-----~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 289 (447)
-++ .+...|...+..-...+ - .+.+..+|+++... .+.+...|...+..+.+.|+.++|..++++..
T Consensus 167 ~~~--~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~----~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi 240 (493)
T 2uy1_A 167 IRG--WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS----FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGI 240 (493)
T ss_dssp HHT--CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred Hhh--ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111 13345555554432221 1 34567788876554 55667889888888899999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC--------CCC---ChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 048090 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK--------LEP---GPEHYSCLVDLLCRAGELDKAWKLINE 358 (447)
Q Consensus 290 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 358 (447)
.. |....+......+...+ + +++.+.+..- ..+ ....|...+..+.+.+..+.|..+|++
T Consensus 241 ~~---P~~~~l~~~y~~~~e~~---~---~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~ 311 (493)
T 2uy1_A 241 EM---SDGMFLSLYYGLVMDEE---A---VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIE 311 (493)
T ss_dssp HH---CCSSHHHHHHHHHTTCT---H---HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hC---CCcHHHHHHHHhhcchh---H---HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 87 44332222111111212 1 1333322210 011 135577777777788899999999999
Q ss_pred HHhCCCCCCchHhHHHHHHHHHhcC-CccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048090 359 MLDRGHGSSSVSMWGALLSACHDCG-KFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELM 429 (447)
Q Consensus 359 ~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 429 (447)
+ ... +.....|...+..-...+ +.+.|..+|+.+++..|.++..+...++...+.|+.+.|..+|+++
T Consensus 312 A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 312 L-GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp H-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred h-hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9 322 223344544333333334 6999999999999998988888888899889999999999999886
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.14 E-value=2.4e-09 Score=84.07 Aligned_cols=130 Identities=9% Similarity=0.028 Sum_probs=109.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHH
Q 048090 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377 (447)
Q Consensus 298 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~ 377 (447)
..+..+...+...|++++|...|++.... .+.+...+..+..++...|++++|...+++..... |.+..++..++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHH
Confidence 45666777788888999999998888765 23357788888899999999999999999998876 888888999999
Q ss_pred HHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHH--HHhcCChHHHHHHHHHHHH
Q 048090 378 ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNL--YAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 378 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 431 (447)
++...|++++|...++++++..|.+...+..+..+ +...|++++|++.+++...
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999999988887555554 7888999999999887754
No 120
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.13 E-value=3.8e-09 Score=86.54 Aligned_cols=126 Identities=13% Similarity=-0.020 Sum_probs=70.5
Q ss_pred HHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 048090 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309 (447)
Q Consensus 230 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 309 (447)
+..+|.+.|++++|...|++.... .|.+...+..+..++...|++++|...|++..+.. +-+..++..+..++..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK----APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 666666667777777666665554 44456666666666677777777777777666643 1245556566555544
Q ss_pred cCc--HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048090 310 TGQ--VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRG 363 (447)
Q Consensus 310 ~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 363 (447)
.|. .+.+...++... ...|....+..+..++...|++++|...|++.++..
T Consensus 135 ~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HhHHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 433 333444444432 112222233334445556677777777777776654
No 121
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.11 E-value=2.8e-08 Score=81.52 Aligned_cols=176 Identities=11% Similarity=-0.087 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcC----CHHH
Q 048090 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNG----YFKE 280 (447)
Q Consensus 205 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~ 280 (447)
+|.+.|++..+. + ++..+..+...|...+++++|...|++.... .+...+..+...|.. + ++++
T Consensus 4 eA~~~~~~aa~~--g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------g~~~a~~~lg~~y~~-~g~~~~~~~ 71 (212)
T 3rjv_A 4 EPGSQYQQQAEA--G---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ------GDGDALALLAQLKIR-NPQQADYPQ 71 (212)
T ss_dssp CTTHHHHHHHHT--T---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCHHHHHHHHHHTTS-STTSCCHHH
T ss_pred hHHHHHHHHHHC--C---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHc-CCCCCCHHH
Confidence 466677777665 3 6777788888888888899998888866442 356677777777777 6 8899
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHH----cCCH
Q 048090 281 VIKLYEAMLMNGTKPDEVAFVTVISACSH----TGQVKLGIEYFEWMVHDYKLEPG---PEHYSCLVDLLCR----AGEL 349 (447)
Q Consensus 281 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~ 349 (447)
|..+|++..+.| +...+..|...|.. .+++++|..+|++..+. .|+ ...+..|...|.. .+++
T Consensus 72 A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~ 145 (212)
T 3rjv_A 72 ARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDD 145 (212)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCH
Confidence 999999987765 55677777777776 78899999999988643 443 6778888888888 7889
Q ss_pred HHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhc-C-----CccHHHHHHHHHhhhCCC
Q 048090 350 DKAWKLINEMLDRGHGSSSVSMWGALLSACHDC-G-----KFELGKLAAQKALELDPH 401 (447)
Q Consensus 350 ~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~~ 401 (447)
++|..+|++..+. |.+..++..|...|... | ++++|...++++.+.+.+
T Consensus 146 ~~A~~~~~~A~~~---~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 146 VKASEYFKGSSSL---SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHHHHHHT---SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHc---CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 9999999999887 22445678888888653 3 889999999999887754
No 122
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.10 E-value=8.5e-09 Score=90.12 Aligned_cols=231 Identities=10% Similarity=-0.075 Sum_probs=156.1
Q ss_pred ccCChhhHHHHhccCCCCchhhHHHHHHHHHh-cCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHH
Q 048090 133 KLLLIHDAELMFDEIPVKNSVCANALLSGYCE-AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211 (447)
Q Consensus 133 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 211 (447)
..|++++|.+++++..+..... +.+ .++++.|...|.+. ...+...|++++|...+.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~-------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS-------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC-------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc-------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 3567778888877654211111 112 47788887777664 345667889999999988
Q ss_pred HHHHhhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCc--chhhHHHHHHHHHhcCCHHHHHHHHH
Q 048090 212 YMIRKCCNLGN---DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK--DVVLWTSMLGVYGRNGYFKEVIKLYE 286 (447)
Q Consensus 212 ~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~ 286 (447)
+.....+.... -..+++.+..+|...|++++|...|++..........+ ...++..+...|.. |++++|+..|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 88776332221 13477888889999999999999998776553222222 24567788888888 99999999999
Q ss_pred HHHhCCC---CC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc---CCCCC-hhhHHHHHHHHHHcCCHHHHHHHHH
Q 048090 287 AMLMNGT---KP--DEVAFVTVISACSHTGQVKLGIEYFEWMVHDY---KLEPG-PEHYSCLVDLLCRAGELDKAWKLIN 357 (447)
Q Consensus 287 ~m~~~~~---~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 357 (447)
+..+... .+ ...++..+...+...|++++|+..|++..... +..+. ...+..+..++...|++++|...|+
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8875311 11 14578888889999999999999999987531 11111 2356667777888899999999999
Q ss_pred HHHhCCCCCCchH-----hHHHHHHHHHhcCCccHHHH
Q 048090 358 EMLDRGHGSSSVS-----MWGALLSACHDCGKFELGKL 390 (447)
Q Consensus 358 ~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~a~~ 390 (447)
+.+ .. |.... ....++.++ ..|+.+.+..
T Consensus 220 ~al-~~--p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 220 ESY-SI--PGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHT-TS--TTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHh-CC--CCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 998 53 43222 234455555 5667655555
No 123
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.09 E-value=1.8e-09 Score=95.56 Aligned_cols=97 Identities=20% Similarity=0.063 Sum_probs=86.8
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHH
Q 048090 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNL 412 (447)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 412 (447)
...|..+..+|.+.|++++|+..++++++.. |++..++..++.++...|++++|...|+++++..|.+..++..+..+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4678888999999999999999999999887 88999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHH-HHHHHHHHH
Q 048090 413 YAKFCMWDEI-GQLRELMKE 431 (447)
Q Consensus 413 ~~~~g~~~~A-~~~~~~m~~ 431 (447)
+.+.|++++| ...+++|..
T Consensus 274 ~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 9999999988 456666643
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.09 E-value=1.6e-08 Score=87.83 Aligned_cols=166 Identities=11% Similarity=0.024 Sum_probs=111.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC--CCC--h
Q 048090 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE-----VAFVTVISACSHTGQVKLGIEYFEWMVHDYKL--EPG--P 333 (447)
Q Consensus 263 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~ 333 (447)
..+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+++......- .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455566777778888888877777664322111 22334455566777888888888877643111 111 3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHH---hCCCCCCc----hHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCC-----
Q 048090 334 EHYSCLVDLLCRAGELDKAWKLINEML---DRGHGSSS----VSMWGALLSACHDCGKFELGKLAAQKALELDPH----- 401 (447)
Q Consensus 334 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----- 401 (447)
.+|+.+...|...|++++|...++++. +.. |++ ..++..++.+|...|++++|...++++++..+.
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 467778888888888888888888876 222 221 146788888888888888888888888775421
Q ss_pred -chhHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 048090 402 -NVGIYVMLSNLYAKFCMWDEI-GQLRELMK 430 (447)
Q Consensus 402 -~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 430 (447)
-..+|..++.+|.+.|++++| ...+++..
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 256788888888888888888 66676654
No 125
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.09 E-value=9.9e-09 Score=89.06 Aligned_cols=166 Identities=13% Similarity=0.040 Sum_probs=126.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhhH
Q 048090 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGT-KPDE----VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHY 336 (447)
Q Consensus 266 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~ 336 (447)
...+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|...|+++.....-.++ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3346778888999999999999877432 2232 13334666777888999999999999864211223 2368
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh----C-CCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCC------chhH
Q 048090 337 SCLVDLLCRAGELDKAWKLINEMLD----R-GHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH------NVGI 405 (447)
Q Consensus 337 ~~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~ 405 (447)
+.+...|...|++++|...++++++ . +..+....++..++.+|...|++++|...++++++..+. -..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 8899999999999999999999873 1 222334457899999999999999999999999886532 2678
Q ss_pred HHHHHHHHHhcCC-hHHHHHHHHHHHH
Q 048090 406 YVMLSNLYAKFCM-WDEIGQLRELMKE 431 (447)
Q Consensus 406 ~~~l~~~~~~~g~-~~~A~~~~~~m~~ 431 (447)
|..++.+|.+.|+ +++|.+.+++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999999995 6999999988765
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.08 E-value=4.6e-09 Score=78.62 Aligned_cols=120 Identities=13% Similarity=0.041 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHH
Q 048090 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375 (447)
Q Consensus 296 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l 375 (447)
+...+..+...+...|+++.|...++++... .+.+...+..+..++...|++++|...+++..... |++..++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ 86 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHH
Confidence 3456666777777888888888888887764 13356777888888888889999998888888775 7778888888
Q ss_pred HHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCCh
Q 048090 376 LSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMW 419 (447)
Q Consensus 376 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 419 (447)
+.++...|++++|...++++++..|.+...+..++.++.+.|++
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88999999999999999999998888888888888888887765
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.07 E-value=6.7e-09 Score=76.96 Aligned_cols=117 Identities=24% Similarity=0.269 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHH
Q 048090 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376 (447)
Q Consensus 297 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~ 376 (447)
...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++|..+++++.... |.+..++..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHH
Confidence 455666667777777777777777777654 13346667777778888888888888888887765 66777788888
Q ss_pred HHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcC
Q 048090 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFC 417 (447)
Q Consensus 377 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 417 (447)
.++...|++++|...++++++..|.++..+..+..++.+.|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888888888877777777665543
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.07 E-value=1.5e-09 Score=86.51 Aligned_cols=127 Identities=9% Similarity=0.097 Sum_probs=71.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHHcCCH--
Q 048090 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL-LCRAGEL-- 349 (447)
Q Consensus 273 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 349 (447)
...|++++|...+++..+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34556666666666655542 2244555666666666666666666666665431 2234555555555 5556665
Q ss_pred HHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchh
Q 048090 350 DKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404 (447)
Q Consensus 350 ~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 404 (447)
++|...+++++..+ |.+..++..++.++...|++++|...++++++..|++..
T Consensus 98 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 98 AQTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 66666666666554 555555666666666666666666666666666665543
No 129
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.06 E-value=2.8e-09 Score=81.43 Aligned_cols=101 Identities=8% Similarity=-0.103 Sum_probs=50.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHH
Q 048090 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379 (447)
Q Consensus 300 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~ 379 (447)
+..+...+...|++++|...|+++... -+.+...|..+..+|.+.|++++|...|++.+..+ |++..++..++.++
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHH
Confidence 333444444555555555555555433 11234444455555555555555555555555444 44445555555555
Q ss_pred HhcCCccHHHHHHHHHhhhCCCchh
Q 048090 380 HDCGKFELGKLAAQKALELDPHNVG 404 (447)
Q Consensus 380 ~~~g~~~~a~~~~~~~~~~~~~~~~ 404 (447)
...|++++|...++++++..|.++.
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 5555555555555555555544443
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.06 E-value=4.3e-09 Score=79.13 Aligned_cols=118 Identities=13% Similarity=0.043 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHH
Q 048090 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375 (447)
Q Consensus 296 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l 375 (447)
+...+..+...+...|++++|...|++..+. .+.+...+..+..++...|++++|...++++.+.. |.+..++..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l 90 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHHH
Confidence 3455556666666666666666666666532 12245666666677777777777777777777655 6666677777
Q ss_pred HHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcC
Q 048090 376 LSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFC 417 (447)
Q Consensus 376 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 417 (447)
+.++...|++++|...++++++..|.+...+..+..++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 777777777777777777777777777777777777766655
No 131
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.04 E-value=3.5e-09 Score=78.96 Aligned_cols=109 Identities=10% Similarity=0.005 Sum_probs=56.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHH
Q 048090 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378 (447)
Q Consensus 299 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~ 378 (447)
.+..+...+...|++++|...|++..+. .+.+...|..+..++.+.|++++|+..+++.++.+ |++..+|..++.+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 81 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 3444444555555555555555555543 12234455555555555555555555555555544 5555555555555
Q ss_pred HHhcCCccHHHHHHHHHhhhC------CCchhHHHHHHH
Q 048090 379 CHDCGKFELGKLAAQKALELD------PHNVGIYVMLSN 411 (447)
Q Consensus 379 ~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~ 411 (447)
+...|++++|...++++++.. |.+..++..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 555555555555555555555 444444444443
No 132
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.04 E-value=2.7e-08 Score=81.73 Aligned_cols=133 Identities=13% Similarity=0.011 Sum_probs=106.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048090 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTV 303 (447)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 303 (447)
...+..+...+...|++++|...|+++ ..|+...|..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l 77 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAV-------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQR 77 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTS-------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH-------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHH
Confidence 345566778888899999999999833 46678888889999999999999999999988764 3367788888
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCCh----------------hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 048090 304 ISACSHTGQVKLGIEYFEWMVHDYKLEPGP----------------EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS 367 (447)
Q Consensus 304 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 367 (447)
..++...|++++|...|+++.+.. +.+. ..+..+..+|...|++++|...++++.+.. |.
T Consensus 78 g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~ 153 (213)
T 1hh8_A 78 GMLYYQTEKYDLAIKDLKEALIQL--RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK--SE 153 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT--TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CS
T ss_pred HHHHHHcccHHHHHHHHHHHHHhC--CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--cc
Confidence 888999999999999999988642 2223 677888888999999999999999988876 54
Q ss_pred c
Q 048090 368 S 368 (447)
Q Consensus 368 ~ 368 (447)
+
T Consensus 154 ~ 154 (213)
T 1hh8_A 154 P 154 (213)
T ss_dssp G
T ss_pred c
Confidence 4
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.03 E-value=3e-09 Score=91.57 Aligned_cols=195 Identities=11% Similarity=-0.058 Sum_probs=127.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 048090 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302 (447)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 302 (447)
+...+..+...+...|++++|...|+++... .+.+...|..+..+|.+.|++++|...+++..+.. +.+...+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 77 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFF 77 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 4456667777788888888888888866654 44467777788888888888888888888877753 225667777
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHh
Q 048090 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPG-PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381 (447)
Q Consensus 303 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 381 (447)
+..++...|++++|...|++..+. .|+ ...+...+....+. .++..... .... ..|.+..+...+... .
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~-~~~~~~~i~~~l~~l--~ 147 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRI---AKKKRWNS-IEER-RIHQESELHSYLTRL--I 147 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHH---HHHHHHHH-HHHT-CCCCCCHHHHHHHHH--H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHH---HHHHHHHH-HHHH-HHhhhHHHHHHHHHH--H
Confidence 778888888888888888877653 221 11111112111111 11112111 2222 225555544444333 2
Q ss_pred cCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhc-CChHHHHHHHHHHHHc
Q 048090 382 CGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKF-CMWDEIGQLRELMKEK 432 (447)
Q Consensus 382 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 432 (447)
.|++++|.+.++++++.+|++......+...+.+. +.+++|.++|+++.+.
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 68888999999999998898887777777767666 6788898888877653
No 134
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.03 E-value=9.9e-09 Score=78.78 Aligned_cols=106 Identities=7% Similarity=-0.055 Sum_probs=95.1
Q ss_pred CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchH
Q 048090 293 TKP-DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVS 370 (447)
Q Consensus 293 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 370 (447)
+.| +...+..+...+...|++++|...|+++... .| +...|..+..+|...|++++|+..|+++++.. |+++.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~ 105 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYT 105 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcH
Confidence 344 3456778888899999999999999999875 45 58889999999999999999999999999987 99999
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhhhCCCch
Q 048090 371 MWGALLSACHDCGKFELGKLAAQKALELDPHNV 403 (447)
Q Consensus 371 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 403 (447)
+|..++.+|...|++++|...|+++++..|+++
T Consensus 106 ~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 106 PVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999998765
No 135
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.02 E-value=2.5e-09 Score=79.03 Aligned_cols=95 Identities=13% Similarity=0.002 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHH
Q 048090 335 HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYA 414 (447)
Q Consensus 335 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 414 (447)
.+..+...+.+.|++++|...+++.++.. |++..+|..++.++...|++++|...++++++.+|.+..++..++.+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45667778899999999999999999887 8899999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHH
Q 048090 415 KFCMWDEIGQLRELMKE 431 (447)
Q Consensus 415 ~~g~~~~A~~~~~~m~~ 431 (447)
..|++++|+..+++..+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999999876
No 136
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.02 E-value=3.9e-10 Score=91.76 Aligned_cols=99 Identities=20% Similarity=0.059 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHH
Q 048090 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413 (447)
Q Consensus 334 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 413 (447)
..|..+..+|.+.|++++|+..+++.+... |.+..++..++.++...|++++|...++++++..|.+..++..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID--KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 677888899999999999999999999876 888999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHH-HHHHHHHHcCC
Q 048090 414 AKFCMWDEIG-QLRELMKEKGL 434 (447)
Q Consensus 414 ~~~g~~~~A~-~~~~~m~~~~~ 434 (447)
...++.+++. ..+..|...|.
T Consensus 167 ~~~~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp HHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 9998888877 56666665443
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.00 E-value=1.4e-08 Score=85.31 Aligned_cols=205 Identities=7% Similarity=-0.079 Sum_probs=140.0
Q ss_pred cCCcHHHHHHHHHHHHHhhhcCCCChhHHHHH-------HHHHHhcCChHHHHHHHHhhhhhc--------c-cC----C
Q 048090 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL-------IEMYGKCGLVTKALQVFNLAGHRL--------E-GE----I 258 (447)
Q Consensus 199 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~--------~-~~----~ 258 (447)
..++...|.+.|.++....| .....|..+ ...+...++..++...+....... . .| +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP---~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE---SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhCh---hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 46777888888888877633 245566666 445555555555555554322210 0 01 0
Q ss_pred Cc----chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC--
Q 048090 259 NK----DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG-- 332 (447)
Q Consensus 259 ~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 332 (447)
.. -...+......+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccH
Confidence 00 0123345667788899999999999988764 354445555666788999999999999866431 1 121
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-chHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHH
Q 048090 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS-SVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411 (447)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 411 (447)
...+..+..++.+.|++++|+..|++.......|. ........+.++.+.|+.++|...|+++...+|. ..++..|..
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 33677788899999999999999999885433244 4456888999999999999999999999999998 766666643
No 138
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.00 E-value=3.7e-09 Score=83.00 Aligned_cols=111 Identities=14% Similarity=0.052 Sum_probs=96.0
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHH
Q 048090 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375 (447)
Q Consensus 296 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l 375 (447)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++.++.+ |.+..+|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 45678888888999999999999999998651 3367888899999999999999999999999887 8888899999
Q ss_pred HHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHH
Q 048090 376 LSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410 (447)
Q Consensus 376 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 410 (447)
+.++...|++++|...++++++..|.+...+....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999998887655444
No 139
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.00 E-value=2.6e-09 Score=79.73 Aligned_cols=98 Identities=12% Similarity=0.033 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCch-------hHH
Q 048090 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV-------GIY 406 (447)
Q Consensus 334 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~ 406 (447)
..+..+...+.+.|++++|++.|++.++.. |++..+|..++.+|...|++++|...++++++..|.+. .+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 345667778888888888888888888776 88888888888888888888888888888888776542 367
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC
Q 048090 407 VMLSNLYAKFCMWDEIGQLRELMKEKG 433 (447)
Q Consensus 407 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 433 (447)
..++.++...|++++|++.|++.....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 777888888888888888888877643
No 140
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.00 E-value=2.4e-07 Score=80.61 Aligned_cols=226 Identities=12% Similarity=0.035 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhc-C-CHHH
Q 048090 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG-LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN-G-YFKE 280 (447)
Q Consensus 204 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~ 280 (447)
++|.++++.++... +.+..+|+.-..++...| .+++++++++.+... .+.+..+|+.-..++.+. + ++++
T Consensus 71 e~AL~lt~~~L~~n---P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~----nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 71 ERALELTEIIVRMN---PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----NLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp HHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----TCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred HHHHHHHHHHHHhC---chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhcCCChHH
Confidence 34555555555441 223344444444444444 355555555544432 344444555444444443 4 4555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH--------HHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC----
Q 048090 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK--------LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE---- 348 (447)
Q Consensus 281 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 348 (447)
++.+++++.+...+ +..+|+.-.-.+.+.+.++ ++++.++++.+. -+-|...|+.....+.+.++
T Consensus 144 EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 144 EIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccc
Confidence 55555555554322 4444444333333333333 677777777654 13356666666666666655
Q ss_pred ---HHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCc--------------------cHHHHHHHHHhhhC------
Q 048090 349 ---LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF--------------------ELGKLAAQKALELD------ 399 (447)
Q Consensus 349 ---~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~------ 399 (447)
++++++.+++++... |.+..+|+.+...+.+.|+. ........++....
T Consensus 221 ~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp HHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred hHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 678888888888776 88888888777777776654 12222222222222
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCcccc
Q 048090 400 PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSW 442 (447)
Q Consensus 400 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 442 (447)
++++.++..|+..|...|+.++|.++++.+.+ .+.|-...||
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~-~~dpir~~yw 340 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSS-EYDQMRAGYW 340 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCGGGHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hhChHHHHHH
Confidence 46778888899999999999999999998754 4566555555
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.99 E-value=2.2e-09 Score=82.49 Aligned_cols=108 Identities=10% Similarity=0.042 Sum_probs=94.8
Q ss_pred HHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhh
Q 048090 320 FEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398 (447)
Q Consensus 320 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 398 (447)
|+++. .+.| +...+..+...+.+.|++++|...|++++..+ |.+..+|..++.++...|++++|...++++++.
T Consensus 10 ~~~al---~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 10 IAMLN---EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHT---TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHH---cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44444 3455 36667778888999999999999999999887 889999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 399 DPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
+|.++.++..++.+|...|++++|.+.|++..+.
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998763
No 142
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.98 E-value=1.2e-08 Score=77.27 Aligned_cols=97 Identities=13% Similarity=0.038 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHH
Q 048090 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNL 412 (447)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 412 (447)
...+..+...+...|++++|...|++.+... |.+..++..++.++...|++++|...++++++..|.++.++..++.+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 4444444455555555555555555554443 44444455555555555555555555555555555555555555555
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 048090 413 YAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 413 ~~~~g~~~~A~~~~~~m~~ 431 (447)
|...|++++|+..+++..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555554443
No 143
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.98 E-value=6.7e-09 Score=75.33 Aligned_cols=100 Identities=13% Similarity=0.082 Sum_probs=84.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCC--chhHHHHH
Q 048090 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH--NVGIYVML 409 (447)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l 409 (447)
+...+..+...+...|++++|...++++.+.. |.+..++..++.++...|++++|...++++++..|. +..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 35667777888888889999999888888776 777778888888888999999999999999888888 88888889
Q ss_pred HHHHHhc-CChHHHHHHHHHHHHcC
Q 048090 410 SNLYAKF-CMWDEIGQLRELMKEKG 433 (447)
Q Consensus 410 ~~~~~~~-g~~~~A~~~~~~m~~~~ 433 (447)
+.++... |++++|.+.+++..+..
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 8888899 99999998888887643
No 144
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.97 E-value=2.1e-08 Score=74.66 Aligned_cols=98 Identities=16% Similarity=0.116 Sum_probs=89.9
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHH
Q 048090 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNL 412 (447)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 412 (447)
...+..+...+.+.|++++|...|++.++.. |.+..+|..++.++...|++++|...++++++.+|.++..|..++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 4457777888999999999999999999887 88899999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 048090 413 YAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 413 ~~~~g~~~~A~~~~~~m~~~ 432 (447)
+...|++++|...+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999988764
No 145
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.95 E-value=2.9e-07 Score=79.77 Aligned_cols=173 Identities=10% Similarity=-0.036 Sum_probs=126.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC
Q 048090 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD----VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT---KPD 296 (447)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~---~p~ 296 (447)
...+...+..+...|++++|.+.+++...... ..++ ...+..+...+...|++++|...+++..+... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEE--YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhcccc--CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 34455667788899999999999986544311 1111 12344466677888999999999999876421 122
Q ss_pred --HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CC
Q 048090 297 --EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG-----PEHYSCLVDLLCRAGELDKAWKLINEMLDRG----HG 365 (447)
Q Consensus 297 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~ 365 (447)
..+++.+...|...|++++|...|+++.+.....|+ ..++..+..+|...|++++|+..+++.++.. ..
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence 457888999999999999999999998732111222 2578889999999999999999999986542 11
Q ss_pred CCchHhHHHHHHHHHhcCCccHH-HHHHHHHhhh
Q 048090 366 SSSVSMWGALLSACHDCGKFELG-KLAAQKALEL 398 (447)
Q Consensus 366 p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 398 (447)
..-..+|..++.++...|++++| ...+++++..
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 11256789999999999999999 8889888764
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.95 E-value=4e-08 Score=71.81 Aligned_cols=111 Identities=14% Similarity=0.091 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHH
Q 048090 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377 (447)
Q Consensus 298 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~ 377 (447)
..+..+...+...|++++|...|++.... .+.+...+..+..++...|++++|...+++..... |++...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~ 80 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHH
Confidence 34455555555666666666666666543 12245555566666666666666666666666554 555556666666
Q ss_pred HHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHH
Q 048090 378 ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNL 412 (447)
Q Consensus 378 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 412 (447)
++...|++++|...++++++..|.++..+..+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 66666666666666666666666666555555443
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.94 E-value=1e-08 Score=75.08 Aligned_cols=102 Identities=12% Similarity=0.080 Sum_probs=93.1
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHH
Q 048090 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNL 412 (447)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 412 (447)
...+..+...+...|++++|...+++..... |.+...+..++.++...|++++|...++++++..|.+...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 4567778889999999999999999999876 88888999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCC
Q 048090 413 YAKFCMWDEIGQLRELMKEKGLKKDV 438 (447)
Q Consensus 413 ~~~~g~~~~A~~~~~~m~~~~~~p~~ 438 (447)
+...|++++|.+.+++..+ ..|+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~--~~~~~ 105 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLK--HEANN 105 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHT--TCTTC
T ss_pred HHHHhhHHHHHHHHHHHHH--cCCCC
Confidence 9999999999999999886 34443
No 148
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.93 E-value=1.1e-07 Score=82.36 Aligned_cols=168 Identities=11% Similarity=-0.030 Sum_probs=124.9
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhhhcccCCCcch----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHH
Q 048090 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV----VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK-PD----EVA 299 (447)
Q Consensus 229 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~ 299 (447)
..+..+...|++++|...++++.... ...|+. ..+..+...+...|++++|...+++..+.... ++ ..+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccc--cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 34667888999999999999765531 122221 23345677777888999999999999874222 22 336
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhc----CCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCchH
Q 048090 300 FVTVISACSHTGQVKLGIEYFEWMVHDY----KLEPG-PEHYSCLVDLLCRAGELDKAWKLINEMLDR----GHGSSSVS 370 (447)
Q Consensus 300 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~ 370 (447)
++.+..+|...|++++|...|+++.+.. +..+. ..++..+...|.+.|++++|...+++.++. +..+.-..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8889999999999999999999987421 11122 347788999999999999999999987643 22233356
Q ss_pred hHHHHHHHHHhcCC-ccHHHHHHHHHhhh
Q 048090 371 MWGALLSACHDCGK-FELGKLAAQKALEL 398 (447)
Q Consensus 371 ~~~~l~~~~~~~g~-~~~a~~~~~~~~~~ 398 (447)
+|..++.++...|+ +++|...+++++..
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 79999999999995 59999999998874
No 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.93 E-value=1.6e-08 Score=77.12 Aligned_cols=102 Identities=13% Similarity=0.000 Sum_probs=89.1
Q ss_pred CCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHH
Q 048090 329 LEPG-PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407 (447)
Q Consensus 329 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 407 (447)
+.|+ ...+..+...+.+.|++++|...|++++..+ |.+...|..++.++...|++++|...++++++.+|.++..+.
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 90 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF 90 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence 3443 5556677788889999999999999998877 888888999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 408 MLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 408 ~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
.++.+|...|++++|...+++..+.
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999988763
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.92 E-value=5.6e-08 Score=81.75 Aligned_cols=186 Identities=9% Similarity=-0.095 Sum_probs=143.4
Q ss_pred hcCChHHHHHHHHhhhhhcccCCCcchhhHHHH-------HHHHHhcCCHHHHHHHHHHHHhCCCCCC------------
Q 048090 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM-------LGVYGRNGYFKEVIKLYEAMLMNGTKPD------------ 296 (447)
Q Consensus 236 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~m~~~~~~p~------------ 296 (447)
..++...|.+.|.++... .|.....|..+ ...+.+.++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~----dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y 91 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY----DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLY 91 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTT
T ss_pred cCCCHHHHHHHHHHHHHh----ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcc
Confidence 579999999999988776 66677888887 4666666666666666665544 2221
Q ss_pred ----------HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 048090 297 ----------EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGS 366 (447)
Q Consensus 297 ----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 366 (447)
......+...+...|++++|.+.|+.+... .|+......+...+.+.+++++|+..|+...... +
T Consensus 92 ~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d 166 (282)
T 4f3v_A 92 GDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP--D 166 (282)
T ss_dssp CCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS--C
T ss_pred cccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC--C
Confidence 123345667788899999999999988643 4654366666678899999999999998765542 1
Q ss_pred Cc--hHhHHHHHHHHHhcCCccHHHHHHHHHhhhC--CC-chhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 367 SS--VSMWGALLSACHDCGKFELGKLAAQKALELD--PH-NVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 367 ~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
+. ..++..++.++...|++++|+..|+++.... |. .+......+.++.+.|+.++|...|+++...
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 11 3368899999999999999999999998543 44 5668889999999999999999999999874
No 151
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.92 E-value=2.1e-08 Score=75.27 Aligned_cols=99 Identities=10% Similarity=0.106 Sum_probs=92.9
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHH
Q 048090 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411 (447)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 411 (447)
+...+..+...+...|++++|...+++..+.. |.+..++..++.++...|++++|...++++++..|.+..++..++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 46778888999999999999999999999876 8888899999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 048090 412 LYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~~ 432 (447)
+|.+.|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999998874
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=5.5e-08 Score=74.52 Aligned_cols=113 Identities=13% Similarity=0.099 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHh
Q 048090 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371 (447)
Q Consensus 296 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 371 (447)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+..+|...|++++|...+++..... |.+..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHH
Confidence 445556666666667777777777776653 3444 4666777777788888888888888877765 767777
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHH
Q 048090 372 WGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413 (447)
Q Consensus 372 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 413 (447)
+..++.++...|++++|...++++++..|.+..++..+....
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 888888888888888888888888888888777776666543
No 153
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.91 E-value=1.6e-08 Score=80.48 Aligned_cols=122 Identities=10% Similarity=0.130 Sum_probs=94.1
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHH-HHhcCCc
Q 048090 307 CSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA-CHDCGKF 385 (447)
Q Consensus 307 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~ 385 (447)
+...|++++|...+++..+. .+.+...|..+..+|...|++++|...++++.... |.+..++..++.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCc
Confidence 34567788888888887765 13356778888888888888888888888888776 7777778888888 7788887
Q ss_pred --cHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 386 --ELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 386 --~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
++|...++++++..|.+..++..++.+|...|++++|...+++..+.
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888888763
No 154
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.91 E-value=3.2e-08 Score=73.19 Aligned_cols=98 Identities=27% Similarity=0.316 Sum_probs=91.8
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHH
Q 048090 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNL 412 (447)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 412 (447)
...+..+...+...|++++|.+.++++.... |.+..++..++.++...|++++|...++++.+..|.+..++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 5678888899999999999999999999876 77888899999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 048090 413 YAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 413 ~~~~g~~~~A~~~~~~m~~~ 432 (447)
|...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999874
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.89 E-value=3.7e-08 Score=77.17 Aligned_cols=99 Identities=15% Similarity=0.069 Sum_probs=53.1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHH
Q 048090 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCL 339 (447)
Q Consensus 261 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 339 (447)
+...+..+...+.+.|++++|+..|++..+.. +-+...+..+..++...|++++|+..|++..+. .| +...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV---DPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 34445555555555555555555555555532 114445555555555555555555555555543 22 34555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC
Q 048090 340 VDLLCRAGELDKAWKLINEMLDRG 363 (447)
Q Consensus 340 ~~~~~~~g~~~~A~~~~~~~~~~~ 363 (447)
..+|...|++++|...|++.++..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC
Confidence 555555555555555555555544
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.86 E-value=4.8e-08 Score=79.47 Aligned_cols=134 Identities=10% Similarity=-0.034 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhc---CCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC---C-CCC-Cc
Q 048090 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDY---KLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDR---G-HGS-SS 368 (447)
Q Consensus 298 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~-~~p-~~ 368 (447)
.++..+...+...|++++|...+++..... +..| ...++..+...+...|++++|...+++.... . -.| ..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 344444444445555555555554443310 1111 1334444555555555555555555554332 1 001 11
Q ss_pred hHhHHHHHHHHHhcCCccHHHHHHHHHhhhC--CCc----hhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 369 VSMWGALLSACHDCGKFELGKLAAQKALELD--PHN----VGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 369 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
..++..++..+...|++++|...++++++.. ..+ ..++..++.++...|++++|.+.+++..+
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2335555555556666666666665555432 111 22345555566666666666665555543
No 157
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.85 E-value=2.6e-08 Score=74.39 Aligned_cols=99 Identities=10% Similarity=0.083 Sum_probs=92.2
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHH
Q 048090 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411 (447)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 411 (447)
+...+..+...+...|++++|...+++..... |++..++..++.++...|++++|...++++++..|.+...+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 45677888889999999999999999999876 8888889999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 048090 412 LYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~~ 432 (447)
+|...|++++|...+++..+.
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999874
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.84 E-value=5.8e-08 Score=73.36 Aligned_cols=115 Identities=10% Similarity=-0.040 Sum_probs=93.3
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHH
Q 048090 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374 (447)
Q Consensus 295 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 374 (447)
.+...+..+...+...|++++|...|++.... .+.+...|..+..++...|++++|...+++.++.+ |.+..++..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~ 82 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFF 82 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHH
Confidence 35677788888888888999999888888765 13347788888888999999999999999998876 888888999
Q ss_pred HHHHHHhcCCccHHHHHHHHHhhhCCC-----chhHHHHHHHHH
Q 048090 375 LLSACHDCGKFELGKLAAQKALELDPH-----NVGIYVMLSNLY 413 (447)
Q Consensus 375 l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~ 413 (447)
++.++...|++++|...++++++..|. +..+...+..+.
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988776 555555555443
No 159
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.83 E-value=2.6e-08 Score=85.66 Aligned_cols=194 Identities=10% Similarity=-0.080 Sum_probs=117.7
Q ss_pred cHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhH
Q 048090 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265 (447)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 265 (447)
+...+..+...+.+.|++++|...|+..++.. +.+...+..+..+|...|++++|...++++... .+.+...+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~ 75 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALEL----DGQSVKAH 75 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----CTTCHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCCHHHH
Confidence 34456666677777788888888888777762 336677777788888888888888888766553 44556677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 048090 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE-VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344 (447)
Q Consensus 266 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 344 (447)
..+..++...|++++|...|++..+.+ |+. ..+...+....+ ...+.. +...... ....+......+...
T Consensus 76 ~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~-~~~~~~~i~~~l~~l-- 146 (281)
T 2c2l_A 76 FFLGQCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEER-RIHQESELHSYLTRL-- 146 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHT-CCCCCCHHHHHHHHH--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHH-HHhhhHHHHHHHHHH--
Confidence 777888888888888888887776532 211 011111111111 111111 1112222 334444444444322
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhc-CCccHHHHHHHHHhh
Q 048090 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC-GKFELGKLAAQKALE 397 (447)
Q Consensus 345 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 397 (447)
..|+.++|.+.+++..+.. |++......+...+.+. +.+++|..+|+++.+
T Consensus 147 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 147 IAAERERELEECQRNHEGH--EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHHTTTSGGGTTT--SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhhhccc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3678888888888877765 76666555565555554 567778888887765
No 160
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.83 E-value=1.9e-07 Score=73.09 Aligned_cols=131 Identities=8% Similarity=-0.025 Sum_probs=98.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048090 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341 (447)
Q Consensus 262 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 341 (447)
...+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+. .+.+...+..+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 3456667777778888888888888877753 235677777888888888888888888888765 1335777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHH--HHhcCCccHHHHHHHHHhh
Q 048090 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA--CHDCGKFELGKLAAQKALE 397 (447)
Q Consensus 342 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~ 397 (447)
++...|++++|...++++.... |.+..++..+..+ +...|++++|...+++...
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8888899999999998888776 6666666444444 7778888888888877654
No 161
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.83 E-value=1.5e-06 Score=75.32 Aligned_cols=182 Identities=12% Similarity=0.034 Sum_probs=87.1
Q ss_pred HHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc-HHHHH
Q 048090 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY--FKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ-VKLGI 317 (447)
Q Consensus 241 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~ 317 (447)
++++.+++.+... .|.+..+|+.-.-.+...++ +++++.+++++.+.... |...|+.-.-.+...|. +++++
T Consensus 91 ~~EL~~~~~~L~~----~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel 165 (331)
T 3dss_A 91 KAELGFLESCLRV----NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEEL 165 (331)
T ss_dssp HHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHh----CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHH
Confidence 3444444443332 33444455444444444442 45555555555554322 44444444334444444 35555
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHHc--------------CCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhc-
Q 048090 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCRA--------------GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC- 382 (447)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~- 382 (447)
+.++++.... +-|...|+.....+.+. +.++++++.+.+.+... |.+..+|+.+-..+.+.
T Consensus 166 ~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~ 241 (331)
T 3dss_A 166 AFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGS 241 (331)
T ss_dssp HHHHHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcc
Confidence 5555555431 22344444443333332 33556666666666555 66666665544444443
Q ss_pred ----------CCccHHHHHHHHHhhhCCCchhHHHHHHHHH---HhcCChHHHHHHHHHHHH
Q 048090 383 ----------GKFELGKLAAQKALELDPHNVGIYVMLSNLY---AKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 383 ----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~ 431 (447)
+.++++.+.++++++..|++.-++..++... ...|..+++...+.++++
T Consensus 242 ~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 242 GRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 2355666666666666666543333332211 124555566666666654
No 162
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.83 E-value=1.3e-08 Score=90.07 Aligned_cols=133 Identities=10% Similarity=-0.002 Sum_probs=106.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 048090 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD--------------EVAFVTVISACSHTGQVKLGIEYFEWMVHD 326 (447)
Q Consensus 261 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 326 (447)
+...+..+...+.+.|++++|...|++..+...... ...|..+..++.+.|++++|+..++++.+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445666677777777777777777777776432211 478888889999999999999999999875
Q ss_pred cCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHH-HHHHHHHhh
Q 048090 327 YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG-KLAAQKALE 397 (447)
Q Consensus 327 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 397 (447)
-+.+...|..+..+|...|++++|...|+++++.. |.+..++..+..++...|++++| ...+++++.
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13358888999999999999999999999999887 88888999999999999999988 456777665
No 163
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.82 E-value=4.5e-06 Score=72.64 Aligned_cols=246 Identities=9% Similarity=-0.017 Sum_probs=175.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCC-cHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHH
Q 048090 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLS-AAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234 (447)
Q Consensus 156 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 234 (447)
+.+-......+..++|+++++++...+ +-+...|+.--.++...+ .++++.++++.++.. .+.+..+|+.-..++
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~---nPKny~aW~hR~wlL 133 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ---NLKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT---TCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh---CCCcHHHHHHHHHHH
Confidence 333334445566788999999998864 334455666666666677 599999999999987 345777888777777
Q ss_pred Hhc-C-ChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHH
Q 048090 235 GKC-G-LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK--------EVIKLYEAMLMNGTKPDEVAFVTVI 304 (447)
Q Consensus 235 ~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~m~~~~~~p~~~~~~~ll 304 (447)
... + ++++++++++++... .+.+..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+...
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~----dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~ 208 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLP----DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRW 208 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSS----CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 776 6 889999999977664 6667888887666666666666 899999999987544 777888877
Q ss_pred HHHhccCc-------HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCH--------------------HHHHHHHH
Q 048090 305 SACSHTGQ-------VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGEL--------------------DKAWKLIN 357 (447)
Q Consensus 305 ~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~ 357 (447)
..+.+.++ ++++++.++++... -+-|...|+.+-..+.+.|+. ....++..
T Consensus 209 ~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (349)
T 3q7a_A 209 YLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGF 286 (349)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------C
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHH
Confidence 77777765 68888998888865 133577787777777776653 34444444
Q ss_pred HHHhCC----CCCCchHhHHHHHHHHHhcCCccHHHHHHHHHh-hhCCCchhHHHHHHHH
Q 048090 358 EMLDRG----HGSSSVSMWGALLSACHDCGKFELGKLAAQKAL-ELDPHNVGIYVMLSNL 412 (447)
Q Consensus 358 ~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~l~~~ 412 (447)
++.... ..+.+..++..|+..|...|+.++|.++++.+. +.+|-....|...+..
T Consensus 287 ~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 287 PMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp CCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 444332 224677789999999999999999999999987 5678777777766543
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.82 E-value=5.4e-08 Score=89.91 Aligned_cols=97 Identities=20% Similarity=0.070 Sum_probs=80.6
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHH
Q 048090 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNL 412 (447)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 412 (447)
...|..+..+|.+.|++++|+..+++++... |++..+|..++.+|...|++++|...|+++++.+|.+..++..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4678888899999999999999999999887 88899999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHH-HHHHHHH
Q 048090 413 YAKFCMWDEIGQ-LRELMKE 431 (447)
Q Consensus 413 ~~~~g~~~~A~~-~~~~m~~ 431 (447)
+.+.|+++++.. .+++|..
T Consensus 395 ~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 999999888763 4555543
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.81 E-value=8.1e-08 Score=71.67 Aligned_cols=104 Identities=13% Similarity=0.009 Sum_probs=66.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-h---hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc---hHhHHH
Q 048090 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPG-P---EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSS---VSMWGA 374 (447)
Q Consensus 302 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~~ 374 (447)
.+...+...|++++|...|+++.+. .|+ . ..+..+..++.+.|++++|...++++.... |++ ..++..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~ 81 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHH
Confidence 3445566667777777777776654 232 2 355666666777777777777777766655 555 555666
Q ss_pred HHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHH
Q 048090 375 LLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410 (447)
Q Consensus 375 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 410 (447)
++.++...|++++|...++++++..|++........
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 677777777777777777777776666655444433
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=5.6e-08 Score=74.45 Aligned_cols=99 Identities=14% Similarity=0.066 Sum_probs=91.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc---hHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHH
Q 048090 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSS---VSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408 (447)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 408 (447)
+...+..+...+...|++++|...|++..+.. |++ ..++..+..++...|++++|...++++++..|.+...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 46778888899999999999999999999876 766 7789999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 048090 409 LSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 409 l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
++.+|...|++++|...+++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999999874
No 167
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.80 E-value=7.4e-08 Score=73.12 Aligned_cols=92 Identities=15% Similarity=0.029 Sum_probs=57.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-------ch-----HhHHHHHHHHHhcCCccHHHHHHHHHhhh-------
Q 048090 338 CLVDLLCRAGELDKAWKLINEMLDRGHGSS-------SV-----SMWGALLSACHDCGKFELGKLAAQKALEL------- 398 (447)
Q Consensus 338 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------- 398 (447)
.....+.+.|++++|+..|++.++.. |+ +. .+|..+..++.+.|++++|...++++++.
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 33444555555555555555555543 33 22 25666677777777777777777777766
Q ss_pred CCCchhHH----HHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 399 DPHNVGIY----VMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 399 ~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
+|++...| +..+.++...|++++|+..|++..+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 67766666 7777777777777777777776654
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.79 E-value=4.3e-08 Score=73.22 Aligned_cols=111 Identities=6% Similarity=0.032 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc-------hH
Q 048090 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSS-------VS 370 (447)
Q Consensus 298 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~ 370 (447)
..+..+...+...|+++.|...|++.... .+.+...+..+..++...|++++|...++++.... |.+ ..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~ 80 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG--RENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--cccchhHHHHHH
Confidence 44556666666777777777777776654 13345666666667777777777777777766554 333 55
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHH
Q 048090 371 MWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413 (447)
Q Consensus 371 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 413 (447)
++..++.++...|++++|...++++++..| ++.....+..+.
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 566677777777777777777777777666 455555554443
No 169
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.79 E-value=4.6e-08 Score=76.48 Aligned_cols=115 Identities=12% Similarity=0.010 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC----------------CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048090 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYK----------------LEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360 (447)
Q Consensus 297 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 360 (447)
...+......+.+.|++++|+..|.+...... -+.+...|..+..+|.+.|++++|+..+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 45677778888899999999999998875300 01124677888888899999999999999988
Q ss_pred hCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCch-hHHHHHHHHH
Q 048090 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV-GIYVMLSNLY 413 (447)
Q Consensus 361 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~ 413 (447)
..+ |.+..+|..++.++...|++++|...++++++.+|.+. .+...+..+.
T Consensus 91 ~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 91 KRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred hcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 876 88888899999999999999999999999999999887 5555554443
No 170
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.77 E-value=3e-07 Score=68.47 Aligned_cols=95 Identities=15% Similarity=0.023 Sum_probs=71.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCch---HhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCc---hhHHHHH
Q 048090 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV---SMWGALLSACHDCGKFELGKLAAQKALELDPHN---VGIYVML 409 (447)
Q Consensus 336 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l 409 (447)
+..+...+...|++++|...++++.+.. |++. .++..++.++...|++++|...++++++..|.+ +.++..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3445566777888888888888877765 5555 467777888888888888888888888877777 6667778
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc
Q 048090 410 SNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 410 ~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
+.+|...|++++|...++++.+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888888877764
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.76 E-value=7.9e-08 Score=70.83 Aligned_cols=99 Identities=12% Similarity=0.000 Sum_probs=76.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHH
Q 048090 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378 (447)
Q Consensus 300 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~ 378 (447)
+..+...+.+.|++++|...|+++.+. .| +...|..+..++...|++++|+..+++.++.+ |++..++..++.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~ 94 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVS 94 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 445566677888888888888888765 44 57778888888888899999999988888877 8888888888888
Q ss_pred HHhcCCccHHHHHHHHHhhhCCCch
Q 048090 379 CHDCGKFELGKLAAQKALELDPHNV 403 (447)
Q Consensus 379 ~~~~g~~~~a~~~~~~~~~~~~~~~ 403 (447)
+...|++++|...++++++..|.+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC------
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 8889999999999998888887654
No 172
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.75 E-value=1.4e-08 Score=74.52 Aligned_cols=94 Identities=17% Similarity=0.147 Sum_probs=64.7
Q ss_pred cCcHHHHHHHHHHHHHhcCC-CC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccH
Q 048090 310 TGQVKLGIEYFEWMVHDYKL-EP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFEL 387 (447)
Q Consensus 310 ~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 387 (447)
.|++++|+..|++..+. +. .| +...+..+..+|...|++++|...+++.++.. |++..++..++.++...|++++
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHH
Confidence 56777777777777642 10 23 35667777777777888888888888777766 7777777777778888888888
Q ss_pred HHHHHHHHhhhCCCchhHH
Q 048090 388 GKLAAQKALELDPHNVGIY 406 (447)
Q Consensus 388 a~~~~~~~~~~~~~~~~~~ 406 (447)
|...++++++..|.++...
T Consensus 80 A~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHhCCCcHHHH
Confidence 8888888777777766543
No 173
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.75 E-value=3.1e-07 Score=74.53 Aligned_cols=99 Identities=12% Similarity=-0.034 Sum_probs=43.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhhhhc----CCCC-cHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCC---
Q 048090 152 SVCANALLSGYCEAKLWAGGLELVRLMPAL----GLDY-DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND--- 223 (447)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 223 (447)
..++..+...+...|++++|...+++..+. +..| ....+..+...+...|++++|...+++..........+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 344444555555555555555555444331 1111 12234444444555555555555555544431111101
Q ss_pred -hhHHHHHHHHHHhcCChHHHHHHHHhh
Q 048090 224 -VFMQSSLIEMYGKCGLVTKALQVFNLA 250 (447)
Q Consensus 224 -~~~~~~l~~~~~~~g~~~~A~~~~~~~ 250 (447)
...+..+...+...|++++|...+++.
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 223444444455555555555555443
No 174
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.75 E-value=2.4e-05 Score=67.80 Aligned_cols=198 Identities=7% Similarity=-0.048 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcC--ChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCC-HH
Q 048090 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG--LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY-FK 279 (447)
Q Consensus 203 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~ 279 (447)
++++..+++.+... .+.+..+|+.-.-++...| .+++++.+++++... .+.+..+|+.-.-.+...|. ++
T Consensus 90 l~~EL~~~~~~L~~---~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~----dprNy~AW~~R~~vl~~l~~~~~ 162 (331)
T 3dss_A 90 VKAELGFLESCLRV---NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA----DERNFHCWDYRRFVAAQAAVAPA 162 (331)
T ss_dssp HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhCcCHH
Confidence 56677777777776 2346667766666666666 367788777776665 56677777776666667776 47
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc--------------CcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHH
Q 048090 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHT--------------GQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLC 344 (447)
Q Consensus 280 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 344 (447)
++++.++++.+..+. |...|+.....+... +.++++++.+...... .| |...|+.+-..+.
T Consensus 163 eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 163 EELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLG 238 (331)
T ss_dssp HHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH
Confidence 788888887776533 555665554444333 4577888888888765 44 5666665554454
Q ss_pred Hc-----------CCHHHHHHHHHHHHhCCCCCCchHhHHHHHHH---HHhcCCccHHHHHHHHHhhhCCCchhHHHHHH
Q 048090 345 RA-----------GELDKAWKLINEMLDRGHGSSSVSMWGALLSA---CHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410 (447)
Q Consensus 345 ~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 410 (447)
+. +.++++++.++++.+.. |++.-.+..++.. ....|..++....+.++.+++|-...-|..+.
T Consensus 239 ~~~~~~~~~~~~~~~l~~el~~~~elle~~--pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 239 AGSGRCELSVEKSTVLQSELESCKELQELE--PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp SSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred hccCccccchHHHHHHHHHHHHHHHHHhhC--cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 44 45789999999999887 8764433333221 12356777899999999999998888887776
Q ss_pred HHH
Q 048090 411 NLY 413 (447)
Q Consensus 411 ~~~ 413 (447)
..+
T Consensus 317 ~~~ 319 (331)
T 3dss_A 317 SKF 319 (331)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.74 E-value=4e-08 Score=91.21 Aligned_cols=120 Identities=10% Similarity=0.061 Sum_probs=102.0
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHh
Q 048090 303 VISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381 (447)
Q Consensus 303 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 381 (447)
+...+.+.|++++|.+.|++..+. .| +...|..+..+|.+.|++++|++.+++.++.. |.+..++..++.+|..
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 344566789999999999999865 44 48888999999999999999999999999886 8889999999999999
Q ss_pred cCCccHHHHHHHHHhhhCCCchhHHHHHHHH--HHhcCChHHHHHHHH
Q 048090 382 CGKFELGKLAAQKALELDPHNVGIYVMLSNL--YAKFCMWDEIGQLRE 427 (447)
Q Consensus 382 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 427 (447)
.|++++|...++++++..|.+..++..+..+ +.+.|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999998888888887 888899999999887
No 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.74 E-value=1.7e-07 Score=67.63 Aligned_cols=103 Identities=15% Similarity=0.078 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--chHhHHH
Q 048090 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS--SVSMWGA 374 (447)
Q Consensus 297 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~~ 374 (447)
...+..+...+...|++++|...++++.+. .+.+...+..+..++...|++++|...+++..+.. |. +..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~ 81 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAA 81 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHH
Confidence 445666777778888888888888888765 13356778888888889999999999999988876 77 7788889
Q ss_pred HHHHHHhc-CCccHHHHHHHHHhhhCCCch
Q 048090 375 LLSACHDC-GKFELGKLAAQKALELDPHNV 403 (447)
Q Consensus 375 l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~ 403 (447)
++.++... |++++|.+.++++++..|+++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999 999999999999998887654
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.73 E-value=1e-07 Score=74.43 Aligned_cols=103 Identities=14% Similarity=0.055 Sum_probs=62.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CC--------CC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 048090 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMN--------GT--------KP-DEVAFVTVISACSHTGQVKLGIEYFEWMV 324 (447)
Q Consensus 262 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--------~~--------~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 324 (447)
...+......+.+.|++++|+..|.+.... .. .| +...|..+..++.+.|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445556666666666777776666666553 00 11 22455566666666666777766666666
Q ss_pred HhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCch
Q 048090 325 HDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369 (447)
Q Consensus 325 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 369 (447)
.. .| +...|..+..+|...|++++|...|++.+... |++.
T Consensus 91 ~~---~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--p~~~ 131 (162)
T 3rkv_A 91 KR---EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH--PAAA 131 (162)
T ss_dssp HH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGGH
T ss_pred hc---CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC--CCCH
Confidence 43 33 35666666666666677777776666666655 5554
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.72 E-value=1.6e-07 Score=84.00 Aligned_cols=92 Identities=12% Similarity=0.036 Sum_probs=84.4
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHH
Q 048090 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411 (447)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 411 (447)
+...|..+..+|.+.|++++|+..++++++.. |++..++..++.+|...|++++|...++++++..|.+..++..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 36778889999999999999999999999876 8899999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHH
Q 048090 412 LYAKFCMWDEIGQL 425 (447)
Q Consensus 412 ~~~~~g~~~~A~~~ 425 (447)
++...++.+++.+.
T Consensus 350 ~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 350 VKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 99988888877543
No 179
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.72 E-value=5.7e-08 Score=78.79 Aligned_cols=157 Identities=6% Similarity=-0.045 Sum_probs=103.3
Q ss_pred HHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------H
Q 048090 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD---------------E 297 (447)
Q Consensus 233 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~---------------~ 297 (447)
.....|+++++.+.++..... .......+..+...+...|++++|...|++..+...... .
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEE----KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp ---------CCCSGGGCCHHH----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHH----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 344445666665555421111 122344566677777888888888888888776421111 2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHH
Q 048090 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377 (447)
Q Consensus 298 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~ 377 (447)
..+..+..++...|++++|...+++..+. .+.+...+..+..+|...|++++|...|++.++.. |.+..++..+..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 164 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHH
Confidence 67788888899999999999999999875 23457888889999999999999999999998876 888888888888
Q ss_pred HHHhcCCccHHH-HHHHHHhh
Q 048090 378 ACHDCGKFELGK-LAAQKALE 397 (447)
Q Consensus 378 ~~~~~g~~~~a~-~~~~~~~~ 397 (447)
++...++.+++. ..+..+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 165 CVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 888877776665 44444443
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.71 E-value=1.7e-07 Score=69.82 Aligned_cols=96 Identities=14% Similarity=0.152 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCc-------hhHHH
Q 048090 335 HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN-------VGIYV 407 (447)
Q Consensus 335 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~ 407 (447)
.+..+...+...|++++|...+++..... |.+..++..++.++...|++++|...++++++..|.+ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 44555555666666666666666665554 5555556666666666666666666666666655443 55566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 408 MLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 408 ~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
.++.+|...|++++|.+.+++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6666666666666666666666553
No 181
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.71 E-value=5.2e-08 Score=86.21 Aligned_cols=149 Identities=12% Similarity=0.036 Sum_probs=88.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048090 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341 (447)
Q Consensus 262 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 341 (447)
...+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 445666777777888888888888887763 444331 233444444432221 136788899
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHH-HhcCChH
Q 048090 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY-AKFCMWD 420 (447)
Q Consensus 342 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 420 (447)
+|.+.|++++|+..+++.++.. |++..+|..++.+|...|++++|...|+++++..|.+..++..+.... ...+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887 889999999999999999999999999999999999999999888773 4566778
Q ss_pred HHHHHHHHHHHc
Q 048090 421 EIGQLRELMKEK 432 (447)
Q Consensus 421 ~A~~~~~~m~~~ 432 (447)
++...|++|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 888899988753
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.70 E-value=3.8e-08 Score=72.13 Aligned_cols=88 Identities=11% Similarity=0.129 Sum_probs=66.4
Q ss_pred HcCCHHHHHHHHHHHHhCCC-CCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHH
Q 048090 345 RAGELDKAWKLINEMLDRGH-GSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIG 423 (447)
Q Consensus 345 ~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 423 (447)
..|++++|+..|++.++.+. .|.+..++..++.++...|++++|...++++++..|.++.++..++.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 35778888888888887631 15666778888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHc
Q 048090 424 QLRELMKEK 432 (447)
Q Consensus 424 ~~~~~m~~~ 432 (447)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888877653
No 183
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.67 E-value=4e-07 Score=67.68 Aligned_cols=99 Identities=8% Similarity=0.068 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc-------h
Q 048090 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSS-------V 369 (447)
Q Consensus 298 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~ 369 (447)
.++..+...+.+.|++++|+..|++.++. .| +...|..+..+|.+.|++++|++.+++.++.+ |+. .
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a 83 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG--RETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC--cccchhhHHHH
Confidence 34556667777777777777777777654 34 46667777777778888888888777776543 322 1
Q ss_pred HhHHHHHHHHHhcCCccHHHHHHHHHhhhCCC
Q 048090 370 SMWGALLSACHDCGKFELGKLAAQKALELDPH 401 (447)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 401 (447)
.+|..++.++...|++++|...|+++++..|+
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 25677778888888888888888888877663
No 184
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.66 E-value=3.3e-08 Score=74.84 Aligned_cols=89 Identities=15% Similarity=0.092 Sum_probs=52.6
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCH----------HHHHHHHHHHHhCCCCCCchHhHHHHHH
Q 048090 309 HTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGEL----------DKAWKLINEMLDRGHGSSSVSMWGALLS 377 (447)
Q Consensus 309 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~p~~~~~~~~l~~ 377 (447)
+.+.+++|.+.++...+. .| +...|..+..++...+++ ++|+..|++.++.+ |+...+|..++.
T Consensus 14 r~~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~ 88 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHH
Confidence 344566666666666543 33 455566566666655543 36666666666655 666666666666
Q ss_pred HHHhcC-----------CccHHHHHHHHHhhhCCCc
Q 048090 378 ACHDCG-----------KFELGKLAAQKALELDPHN 402 (447)
Q Consensus 378 ~~~~~g-----------~~~~a~~~~~~~~~~~~~~ 402 (447)
+|...| ++++|...|+++++++|.+
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 666553 5666666666666666654
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.64 E-value=2.3e-06 Score=80.86 Aligned_cols=174 Identities=13% Similarity=0.041 Sum_probs=143.2
Q ss_pred ChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 048090 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY----------FKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308 (447)
Q Consensus 239 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 308 (447)
..++|++.++++... .+.+..+|+.--.++...|+ +++++..++++.+...+ +..+|..-..++.
T Consensus 44 ~~eeal~~~~~~l~~----nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~ 118 (567)
T 1dce_A 44 LDESVLELTSQILGA----NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLS 118 (567)
T ss_dssp CSHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 446778888877665 55566778777777766666 89999999999986533 6778888777888
Q ss_pred ccC--cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhc---
Q 048090 309 HTG--QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG-ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC--- 382 (447)
Q Consensus 309 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~--- 382 (447)
+.+ +++++++.++++.+.. +-+...|+.-...+.+.| .++++++.++++++.+ |.+..+|+.....+...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCC
T ss_pred HcccccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHhhccc
Confidence 888 6799999999999761 446888888887888888 8999999999999887 88999999999888774
Q ss_pred -----------CCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHH
Q 048090 383 -----------GKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421 (447)
Q Consensus 383 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 421 (447)
+.++++.+.+++++..+|.+..+|..+...+.+.++.++
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999988887554
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.64 E-value=1.3e-07 Score=71.85 Aligned_cols=104 Identities=12% Similarity=0.018 Sum_probs=80.3
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-------------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC------
Q 048090 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPG-------------PEHYSCLVDLLCRAGELDKAWKLINEMLDR------ 362 (447)
Q Consensus 302 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 362 (447)
.....+.+.|++++|+..|++.++- .|+ ...|..+..++.+.|++++|+..+++.++.
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3344445555556665555555533 222 237888899999999999999999999887
Q ss_pred -CCCCCchHhH----HHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHH
Q 048090 363 -GHGSSSVSMW----GALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410 (447)
Q Consensus 363 -~~~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 410 (447)
+ |++..+| ...+.++...|++++|...|++++++.|.+..+..-+-
T Consensus 93 ~~--pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 93 LN--QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp TT--STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred CC--CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 6 9999999 99999999999999999999999999988766544443
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.61 E-value=2.4e-08 Score=72.33 Aligned_cols=94 Identities=10% Similarity=-0.022 Sum_probs=80.1
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCc------hhH
Q 048090 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN------VGI 405 (447)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~ 405 (447)
+...+..+...+...|++++|...+++.++.. |.+..++..++.++...|++++|...++++++..|.+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 45667778888999999999999999998876 8888889999999999999999999999999999988 778
Q ss_pred HHHHHHHHHhcCChHHHHHHHH
Q 048090 406 YVMLSNLYAKFCMWDEIGQLRE 427 (447)
Q Consensus 406 ~~~l~~~~~~~g~~~~A~~~~~ 427 (447)
+..++.++...|++++|.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHH
Confidence 8888888888887777755444
No 188
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.60 E-value=5.1e-07 Score=70.05 Aligned_cols=133 Identities=17% Similarity=0.024 Sum_probs=88.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCCchH
Q 048090 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGELDKAWKLINEMLDRG----HGSSSVS 370 (447)
Q Consensus 299 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~ 370 (447)
++..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|...+++..... ..+....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555555666666666666655432100111 2356667777778888888888887765432 1111244
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhhhCC------CchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 371 MWGALLSACHDCGKFELGKLAAQKALELDP------HNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 371 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
++..++.++...|++++|...++++++..+ ....++..++..|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 577788888888899888888888876531 1355788888899999999999999888765
No 189
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.59 E-value=3.3e-06 Score=77.51 Aligned_cols=167 Identities=12% Similarity=-0.080 Sum_probs=105.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHh---cCCCCC-hhh
Q 048090 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNG-TKPDE----VAFVTVISACSHTGQVKLGIEYFEWMVHD---YKLEPG-PEH 335 (447)
Q Consensus 265 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~-~~~ 335 (447)
+..+...|...|++++|.+.+..+...- ..++. .+.+.+-..+...|+++.+..+++..... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5566777777777777777777665421 11111 12223333444567777887777766432 122222 456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhC---CCc----hh
Q 048090 336 YSCLVDLLCRAGELDKAWKLINEMLDR----GHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD---PHN----VG 404 (447)
Q Consensus 336 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~ 404 (447)
+..+...|...|++++|..+++++... +-.+....++..++..|...|++++|..++++++... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 677778888888888888887776432 2223345567778888888888888888888777642 211 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 405 IYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 405 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
++..++..+...|++++|...+.+...
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 566677777788888888777666643
No 190
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.55 E-value=4e-07 Score=66.32 Aligned_cols=82 Identities=16% Similarity=0.061 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHH
Q 048090 315 LGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393 (447)
Q Consensus 315 ~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 393 (447)
.|...|++..+. .| +...+..+...|...|++++|...+++.+... |.+..+|..++.++...|++++|...++
T Consensus 3 ~a~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQ---GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTT---TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456666666643 33 46677777777777888888888887777765 6677777777778888888888888888
Q ss_pred HHhhhCCC
Q 048090 394 KALELDPH 401 (447)
Q Consensus 394 ~~~~~~~~ 401 (447)
++++..|.
T Consensus 78 ~al~~~~~ 85 (115)
T 2kat_A 78 SGLAAAQS 85 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHhccc
Confidence 77776653
No 191
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.54 E-value=7.8e-07 Score=61.44 Aligned_cols=83 Identities=27% Similarity=0.306 Sum_probs=72.6
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHH
Q 048090 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNL 412 (447)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 412 (447)
...+..+...+...|++++|...+++.++.. |.+..++..++.++...|++++|...++++++..|.+..++..++.+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 5667778888899999999999999998876 77888899999999999999999999999999999999999988888
Q ss_pred HHhcC
Q 048090 413 YAKFC 417 (447)
Q Consensus 413 ~~~~g 417 (447)
+.+.|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 76654
No 192
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.53 E-value=3.1e-06 Score=77.68 Aligned_cols=171 Identities=9% Similarity=-0.046 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCc--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHH
Q 048090 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK--DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN----GTKPD-EVA 299 (447)
Q Consensus 227 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~ 299 (447)
+..++..|...|++++|.+.+..+......-... ...+.+.+...+...|+++.|..+++..... +..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3456666777777777777766554432211100 0112233333444556777777776665432 22222 345
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCC---CC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC--C-CCCc--hH
Q 048090 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKL---EP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRG--H-GSSS--VS 370 (447)
Q Consensus 300 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~p~~--~~ 370 (447)
+..+...+...|++++|..+++++.....- .+ ....+..++..|...|++++|..++++..... + .|+. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 666777777777777777777776543111 11 14466777777777778777777777664321 1 1111 23
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhh
Q 048090 371 MWGALLSACHDCGKFELGKLAAQKALE 397 (447)
Q Consensus 371 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 397 (447)
.+..++..+...|++++|...+.++.+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455666667777777777777776655
No 193
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.49 E-value=1.4e-06 Score=80.73 Aligned_cols=116 Identities=9% Similarity=0.017 Sum_probs=59.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHH
Q 048090 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELD 350 (447)
Q Consensus 272 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 350 (447)
+.+.|++++|.+.+++..+.. +.+..++..+..++.+.|++++|...+++..+. .| +...|..+..+|...|+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHH
Confidence 344555555555555555532 113455555555555556666666665555532 23 3455555555566666666
Q ss_pred HHHHHHHHHHhCCCCCCchHhHHHHHHH--HHhcCCccHHHHHHH
Q 048090 351 KAWKLINEMLDRGHGSSSVSMWGALLSA--CHDCGKFELGKLAAQ 393 (447)
Q Consensus 351 ~A~~~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 393 (447)
+|.+.++++++.. |++..++..+..+ +.+.|++++|...++
T Consensus 92 eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666655544 4444445555444 555566666666655
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.47 E-value=4.6e-06 Score=78.87 Aligned_cols=163 Identities=11% Similarity=0.044 Sum_probs=134.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc----------HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH
Q 048090 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ----------VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345 (447)
Q Consensus 276 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 345 (447)
...++|++.++++...+.. +...|+.--.++...|+ ++++++.++.+.+. -+-+..+|..-..++.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 3456889999999986422 45566665556666666 89999999999976 24468888888888889
Q ss_pred cC--CHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcC-CccHHHHHHHHHhhhCCCchhHHHHHHHHHHhc------
Q 048090 346 AG--ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG-KFELGKLAAQKALELDPHNVGIYVMLSNLYAKF------ 416 (447)
Q Consensus 346 ~g--~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 416 (447)
.| +++++++.++++.+.+ |.+..+|+.-..++...| .++++.+.++++++.+|.|..+|+....++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 99 7799999999999988 889999999999999999 899999999999999999999999999988774
Q ss_pred --------CChHHHHHHHHHHHHcCCCCCCccccccc
Q 048090 417 --------CMWDEIGQLRELMKEKGLKKDVGCSWIEV 445 (447)
Q Consensus 417 --------g~~~~A~~~~~~m~~~~~~p~~~~~~~~~ 445 (447)
+.++++++.+++... +.|+....|...
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~ 232 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYH 232 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHH
Confidence 567889999988886 567777666543
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.46 E-value=6.9e-07 Score=78.98 Aligned_cols=155 Identities=9% Similarity=0.027 Sum_probs=88.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 048090 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302 (447)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 302 (447)
....+..+...+.+.|++++|...|+++... .|+... +...++.+++...+. ...|..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~-----~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~n 235 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY-----MGDDFM-------FQLYGKYQDMALAVK----------NPCHLN 235 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH-----SCHHHH-------HTCCHHHHHHHHHHH----------THHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----hccchh-------hhhcccHHHHHHHHH----------HHHHHH
Confidence 4667888889999999999999999977664 333221 233444444433221 136788
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHH-HHh
Q 048090 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA-CHD 381 (447)
Q Consensus 303 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~-~~~ 381 (447)
+..++.+.|++++|+..+++.++. -+.+...|..+..+|...|++++|...|+++++.. |++..++..+... ...
T Consensus 236 la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 236 IAACLIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQE 311 (338)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHH
Confidence 888999999999999999999865 13358889999999999999999999999998876 8888877777776 344
Q ss_pred cCCccHHHHHHHHHhhhCCCch
Q 048090 382 CGKFELGKLAAQKALELDPHNV 403 (447)
Q Consensus 382 ~g~~~~a~~~~~~~~~~~~~~~ 403 (447)
.+..+.+...|+++++..|.++
T Consensus 312 ~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 312 KALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHhhCCCCCCC
Confidence 5677888899999998887654
No 196
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.46 E-value=1.8e-06 Score=66.85 Aligned_cols=136 Identities=15% Similarity=0.117 Sum_probs=77.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hh
Q 048090 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK-PD----EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PE 334 (447)
Q Consensus 264 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 334 (447)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++......-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444445555555555555555554432100 01 134555555666666666666666665432110111 34
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhC
Q 048090 335 HYSCLVDLLCRAGELDKAWKLINEMLDR----GHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399 (447)
Q Consensus 335 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 399 (447)
.+..+...+...|++++|...+++.... +..+....++..+...+...|++++|...++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5566667777777777777777776533 2112223456777888888888888888888877643
No 197
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.45 E-value=1.1e-06 Score=81.20 Aligned_cols=103 Identities=11% Similarity=-0.009 Sum_probs=85.1
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc---------------hHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 048090 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSS---------------VSMWGALLSACHDCGKFELGKLAAQKALE 397 (447)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 397 (447)
...|..+...+.+.|++++|...|++++... |.+ ..+|..+..+|.+.|++++|...++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4456666777777777777777777777654 544 57799999999999999999999999999
Q ss_pred hCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCc
Q 048090 398 LDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVG 439 (447)
Q Consensus 398 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 439 (447)
.+|.+..+|..++.+|...|++++|+..|++..+ +.|+..
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~ 385 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNK 385 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCH
Confidence 9999999999999999999999999999999986 455543
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.43 E-value=1.2e-06 Score=61.96 Aligned_cols=66 Identities=12% Similarity=0.113 Sum_probs=40.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhC
Q 048090 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399 (447)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 399 (447)
+...+..+..+|...|++++|+..|+++++.+ |++..+|..++.+|...|++++|...++++++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 34555566666666666666666666666555 5555566666666666666666666666665544
No 199
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.41 E-value=1.7e-06 Score=77.37 Aligned_cols=96 Identities=13% Similarity=0.054 Sum_probs=76.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC--------------CCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCc
Q 048090 337 SCLVDLLCRAGELDKAWKLINEMLDR--------------GHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402 (447)
Q Consensus 337 ~~l~~~~~~~g~~~~A~~~~~~~~~~--------------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 402 (447)
..+...+.+.|++++|+..|+++++. ...|.+..+|..+..++.+.|++++|...++++++.+|.+
T Consensus 227 ~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~ 306 (370)
T 1ihg_A 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN 306 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchh
Confidence 33444455555555555555554430 0226677889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 403 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
..++..++.+|...|++++|++.+++..+.
T Consensus 307 ~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 307 TKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999874
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.40 E-value=1e-06 Score=66.67 Aligned_cols=96 Identities=13% Similarity=0.077 Sum_probs=82.1
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCcc----------HHHHHHHHHhhhCCCchhHHHHHHHH
Q 048090 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE----------LGKLAAQKALELDPHNVGIYVMLSNL 412 (447)
Q Consensus 343 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~----------~a~~~~~~~~~~~~~~~~~~~~l~~~ 412 (447)
..+.+.+++|.+.+++.++.+ |++...|..++.++...++++ +|+..|+++++++|++..+|..++.+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 346678899999999999887 999999999999999888754 99999999999999999999999999
Q ss_pred HHhcC-----------ChHHHHHHHHHHHHcCCCCCCcccc
Q 048090 413 YAKFC-----------MWDEIGQLRELMKEKGLKKDVGCSW 442 (447)
Q Consensus 413 ~~~~g-----------~~~~A~~~~~~m~~~~~~p~~~~~~ 442 (447)
|...| ++++|++.|++..+ +.|+-..|+
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~ 128 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYL 128 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHH
Confidence 98874 89999999999987 566655443
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.29 E-value=4.2e-06 Score=60.74 Aligned_cols=79 Identities=15% Similarity=0.096 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048090 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMK 430 (447)
Q Consensus 351 ~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 430 (447)
+|+..+++.++.. |++...+..++.++...|++++|...++++++..|.+...|..++.+|...|++++|...+++..
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4667777777765 77777788888888888888888888888888888888888888888888888888888888776
Q ss_pred H
Q 048090 431 E 431 (447)
Q Consensus 431 ~ 431 (447)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.26 E-value=2.9e-05 Score=58.38 Aligned_cols=110 Identities=13% Similarity=-0.043 Sum_probs=55.4
Q ss_pred cHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHh----cCCccH
Q 048090 312 QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD----CGKFEL 387 (447)
Q Consensus 312 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~ 387 (447)
++++|..+|++..+. + .|... |...|...+.+++|.++|++..+.| +..++..|...|.. .+++++
T Consensus 10 d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred CHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHcCCCCCccHHH
Confidence 445555555555443 2 12211 4444444445555555555555543 34445555555554 455555
Q ss_pred HHHHHHHHhhhCCCchhHHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 048090 388 GKLAAQKALELDPHNVGIYVMLSNLYAK----FCMWDEIGQLRELMKEKG 433 (447)
Q Consensus 388 a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 433 (447)
|...++++.+. .++..+..|...|.. .+++++|.+.+++..+.|
T Consensus 80 A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 55555555544 234445555555555 555555555555555544
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.24 E-value=1.2e-05 Score=74.16 Aligned_cols=127 Identities=13% Similarity=0.069 Sum_probs=99.1
Q ss_pred HHhccCcHHHHHHHHHHHHHhcC--CCC---C-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C-CCCCchHhHH
Q 048090 306 ACSHTGQVKLGIEYFEWMVHDYK--LEP---G-PEHYSCLVDLLCRAGELDKAWKLINEMLDR-----G-HGSSSVSMWG 373 (447)
Q Consensus 306 ~~~~~~~~~~a~~~~~~~~~~~~--~~~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~~~~~~ 373 (447)
.+...|++++|..++++..+... +.| + ..+++.|..+|...|++++|+.++++.+.. | --|+-..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35578999999999988775421 222 2 567889999999999999999999887533 2 1133445688
Q ss_pred HHHHHHHhcCCccHHHHHHHHHhhh-----CCC---chhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 374 ALLSACHDCGKFELGKLAAQKALEL-----DPH---NVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 374 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
.|+..|...|++++|..+++++++. +|+ ...+...+..++...|++++|+.++.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999873 455 3455678888999999999999999999863
No 204
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.22 E-value=1.3e-05 Score=55.33 Aligned_cols=68 Identities=16% Similarity=0.093 Sum_probs=53.2
Q ss_pred CCchHhHHHHHHHHHhcCC---ccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 048090 366 SSSVSMWGALLSACHDCGK---FELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433 (447)
Q Consensus 366 p~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 433 (447)
|+++..+..++.++...++ .++|...++++++.+|.++.....++..+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6677777777777765544 6788888888888888888888888888888888888888888887643
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.19 E-value=6.8e-06 Score=57.90 Aligned_cols=66 Identities=20% Similarity=0.121 Sum_probs=58.4
Q ss_pred CCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 366 SSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 366 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
|++..++..++.++...|++++|...++++++.+|.++.+|..++.+|...|++++|++.+++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 778888899999999999999999999999999999999999999999999999999998888765
No 206
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.19 E-value=3.4e-06 Score=59.34 Aligned_cols=82 Identities=17% Similarity=0.214 Sum_probs=66.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCchH-hHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcC
Q 048090 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVS-MWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFC 417 (447)
Q Consensus 339 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 417 (447)
....+.+.|++++|...++++++.. |.+.. ++..++.++...|++++|...++++++.+|.+..++.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 4566788999999999999998876 88888 89999999999999999999999999999988877633 4
Q ss_pred ChHHHHHHHHHHH
Q 048090 418 MWDEIGQLRELMK 430 (447)
Q Consensus 418 ~~~~A~~~~~~m~ 430 (447)
.+.++...+++..
T Consensus 76 ~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 76 MVMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHh
Confidence 4455555555443
No 207
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.09 E-value=6.7e-06 Score=59.07 Aligned_cols=94 Identities=14% Similarity=0.115 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc------h
Q 048090 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSS------V 369 (447)
Q Consensus 296 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~ 369 (447)
+...+..+...+...|++++|...|++..+. .+.+...+..+..++.+.|++++|+..+++.++.. |++ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHH
Confidence 4556677777888888888888888888765 13357778888888888888888888888888776 666 5
Q ss_pred HhHHHHHHHHHhcCCccHHHHHHH
Q 048090 370 SMWGALLSACHDCGKFELGKLAAQ 393 (447)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~a~~~~~ 393 (447)
.++..+..++...|+++.|...++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHH
Confidence 667777777777777766655444
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.04 E-value=0.00015 Score=54.36 Aligned_cols=112 Identities=12% Similarity=-0.047 Sum_probs=86.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH----cCCHHH
Q 048090 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR----AGELDK 351 (447)
Q Consensus 276 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 351 (447)
+++++|..+|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 45778888888888876 34443 666667777788888888888654 356677778888877 788999
Q ss_pred HHHHHHHHHhCCCCCCchHhHHHHHHHHHh----cCCccHHHHHHHHHhhhCC
Q 048090 352 AWKLINEMLDRGHGSSSVSMWGALLSACHD----CGKFELGKLAAQKALELDP 400 (447)
Q Consensus 352 A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 400 (447)
|.++|++..+.| ++.++..|...|.. .+++++|...++++.+.+.
T Consensus 80 A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLN----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999988876 56668888888888 7889999999998888764
No 209
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.03 E-value=2.7e-05 Score=71.82 Aligned_cols=128 Identities=13% Similarity=-0.086 Sum_probs=61.9
Q ss_pred HHhcCCHHHHHHHHHhhhhcC---CCC----cHhhHHHHHHHHhcCCcHHHHHHHHHHHHHh-----hhcCCCChhHHHH
Q 048090 162 YCEAKLWAGGLELVRLMPALG---LDY----DHFTLSALLRACAGLSAAEFGRQVHAYMIRK-----CCNLGNDVFMQSS 229 (447)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~ 229 (447)
+...|++++|+.++++..+.. +.| ...+++.+..+|...|++++|..++++.+.. |+..+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445666666666666554320 111 2235566666666666666666666665543 1111112334555
Q ss_pred HHHHHHhcCChHHHHHHHHhhhhhcccCCCcc----hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048090 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKD----VVLWTSMLGVYGRNGYFKEVIKLYEAML 289 (447)
Q Consensus 230 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 289 (447)
|...|...|++++|+.+++++.........|+ ..+.+.+..++...+.+++|+.+|..++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666655554443322222221 1122333344444445555555554443
No 210
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.98 E-value=3.5e-05 Score=52.82 Aligned_cols=66 Identities=32% Similarity=0.326 Sum_probs=61.5
Q ss_pred CchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 367 SSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 367 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
.+...+..+...+...|++++|...++++++..|.+..++..++.++.+.|++++|...+++..+.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 356678899999999999999999999999999999999999999999999999999999999874
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.80 E-value=0.00024 Score=61.78 Aligned_cols=141 Identities=16% Similarity=0.044 Sum_probs=73.6
Q ss_pred CCcchhhHHHHHHHHHh--cC---CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhc---cC-----cHHHHHHHHHHH
Q 048090 258 INKDVVLWTSMLGVYGR--NG---YFKEVIKLYEAMLMNGTKPD-EVAFVTVISACSH---TG-----QVKLGIEYFEWM 323 (447)
Q Consensus 258 ~~~~~~~~~~l~~~~~~--~g---~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~---~~-----~~~~a~~~~~~~ 323 (447)
.+.+...|...+.+... .+ ...+|..+|++..+. .|+ ...+..+.-++.- .+ ........++..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 55566677776655432 22 246677777777764 443 3444444433321 00 111111111111
Q ss_pred HHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCch
Q 048090 324 VHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403 (447)
Q Consensus 324 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 403 (447)
......+.+..+|..+...+...|++++|...+++++..+ | +...|..++..+.-.|++++|.+.+++++.++|..+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--M-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 1111123345566665555555666666666666666665 4 344456666666666666666666666666666543
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.77 E-value=0.0025 Score=55.49 Aligned_cols=65 Identities=15% Similarity=0.084 Sum_probs=43.5
Q ss_pred CCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 366 SSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 366 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
|.+..+|..+...+...|++++|...+++++.++| +...|..++..+.-.|++++|.+.+++...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55666666666666666777777777777777764 455566666667777777777777766655
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.76 E-value=0.00027 Score=48.57 Aligned_cols=70 Identities=9% Similarity=-0.019 Sum_probs=60.4
Q ss_pred CCChhhHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCC
Q 048090 330 EPGPEHYSCLVDLLCRAGE---LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401 (447)
Q Consensus 330 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 401 (447)
+.+...+..+..++...++ .++|..++++.++.+ |+++.+...++..+...|++++|...|+++++..|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4567777788887765554 799999999999987 999999999999999999999999999999999887
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.74 E-value=0.00017 Score=53.89 Aligned_cols=96 Identities=14% Similarity=0.049 Sum_probs=76.4
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCC-CchHhHHHHHHHHHhcCCc
Q 048090 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG---ELDKAWKLINEMLDRGHGS-SSVSMWGALLSACHDCGKF 385 (447)
Q Consensus 310 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~ 385 (447)
......+.+.|.+..+. + .++..+...+..++++.+ +.+++..++++..+.+ .| .....+..|.-++.+.|++
T Consensus 11 ~~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp HHHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCH
Confidence 34566777777777654 3 478888888888999988 6679999999998875 24 3466788899999999999
Q ss_pred cHHHHHHHHHhhhCCCchhHHHH
Q 048090 386 ELGKLAAQKALELDPHNVGIYVM 408 (447)
Q Consensus 386 ~~a~~~~~~~~~~~~~~~~~~~~ 408 (447)
++|.+.++.+++.+|.+..+...
T Consensus 88 ~~A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 88 EKALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999988765544
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.64 E-value=0.0001 Score=66.87 Aligned_cols=86 Identities=10% Similarity=0.030 Sum_probs=51.2
Q ss_pred cCCHHHHHHHHHHHHhC---CCCCCc---hHhHHHHHHHHHhcCCccHHHHHHHHHhhh-----CCC---chhHHHHHHH
Q 048090 346 AGELDKAWKLINEMLDR---GHGSSS---VSMWGALLSACHDCGKFELGKLAAQKALEL-----DPH---NVGIYVMLSN 411 (447)
Q Consensus 346 ~g~~~~A~~~~~~~~~~---~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~---~~~~~~~l~~ 411 (447)
.|++++|+.++++.++. -+.|++ ..+++.|+.+|...|++++|..+++++++. +|+ ....++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666665432 111332 234666677777777777777777766652 222 3445666777
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 048090 412 LYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~ 431 (447)
.|...|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77777777777777666543
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.60 E-value=0.00025 Score=64.41 Aligned_cols=63 Identities=13% Similarity=0.041 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C-CCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 048090 335 HYSCLVDLLCRAGELDKAWKLINEMLDR-----G-HGSSSVSMWGALLSACHDCGKFELGKLAAQKALE 397 (447)
Q Consensus 335 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 397 (447)
+++.|..+|...|++++|+.++++++.. | .-|.-..+++.|+..|...|++++|..+++++++
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444444455555555555555444321 1 0011222344444455555555555555555544
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.60 E-value=0.00019 Score=50.02 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=55.2
Q ss_pred HHHHHHHhcCCccHHHHHHHHHhhhCCCchh-HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048090 374 ALLSACHDCGKFELGKLAAQKALELDPHNVG-IYVMLSNLYAKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 374 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 432 (447)
..+..+...|++++|...++++++..|.+.. .+..++.+|...|++++|++.+++..+.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4677888999999999999999999999999 9999999999999999999999999874
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.59 E-value=0.00056 Score=48.23 Aligned_cols=79 Identities=20% Similarity=0.140 Sum_probs=60.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHH
Q 048090 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRG-----HGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406 (447)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 406 (447)
+..-+..+...+.+.|++..|...++.+++.. ..++...++..|+.++.+.|+++.|...++++++..|.+..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 44455677777888888888888888876531 1244667788999999999999999999999999999887775
Q ss_pred HHHH
Q 048090 407 VMLS 410 (447)
Q Consensus 407 ~~l~ 410 (447)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5553
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.53 E-value=0.00074 Score=50.49 Aligned_cols=88 Identities=14% Similarity=0.121 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHHcCCHHHH
Q 048090 278 FKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG---QVKLGIEYFEWMVHDYKLEP--GPEHYSCLVDLLCRAGELDKA 352 (447)
Q Consensus 278 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 352 (447)
...+.+.|.+..+.|. ++..+...+..++++++ +.++++.+|+.+.+. . .| ....+-.|.-++.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3445555555555443 45555555555666655 455666666666654 2 23 234444455556666666666
Q ss_pred HHHHHHHHhCCCCCCchH
Q 048090 353 WKLINEMLDRGHGSSSVS 370 (447)
Q Consensus 353 ~~~~~~~~~~~~~p~~~~ 370 (447)
.++++.+++.. |++..
T Consensus 91 ~~y~~~lL~ie--P~n~Q 106 (152)
T 1pc2_A 91 LKYVRGLLQTE--PQNNQ 106 (152)
T ss_dssp HHHHHHHHHHC--TTCHH
T ss_pred HHHHHHHHhcC--CCCHH
Confidence 66666666654 55444
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.53 E-value=0.00059 Score=56.91 Aligned_cols=84 Identities=10% Similarity=0.015 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhCCCCCC--chHhHHHHHHHHHh-----cCCccHHHHHHHHHhhhCCC-chhHHHHHHHHHHhc-CChH
Q 048090 350 DKAWKLINEMLDRGHGSS--SVSMWGALLSACHD-----CGKFELGKLAAQKALELDPH-NVGIYVMLSNLYAKF-CMWD 420 (447)
Q Consensus 350 ~~A~~~~~~~~~~~~~p~--~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-g~~~ 420 (447)
..|...+++.++.+ |. +..+|..++..|.. -|+.++|.+.|+++++++|+ +..++..+++.+++. |+.+
T Consensus 180 ~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 44555555555554 44 34455556655555 25666666666666666664 356666666655553 5666
Q ss_pred HHHHHHHHHHHcCCC
Q 048090 421 EIGQLRELMKEKGLK 435 (447)
Q Consensus 421 ~A~~~~~~m~~~~~~ 435 (447)
+|.+.+++.......
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 666666666554444
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.28 E-value=0.0038 Score=56.63 Aligned_cols=92 Identities=10% Similarity=0.114 Sum_probs=69.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC---CCCCc---hHhHHHHHHHHHhcCCccHHHHHHHHHhhh-----CCC---chhH
Q 048090 340 VDLLCRAGELDKAWKLINEMLDRG---HGSSS---VSMWGALLSACHDCGKFELGKLAAQKALEL-----DPH---NVGI 405 (447)
Q Consensus 340 ~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~---~~~~ 405 (447)
+..+.+.|++++|+.++++.++.. ..|++ ..+++.|+.+|...|++++|..+++++++. +|. ....
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444667788889988888886531 22333 346788888999999999999999888763 233 4556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 406 YVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 406 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
++.|+..|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888899999999999988887754
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.26 E-value=0.032 Score=55.48 Aligned_cols=153 Identities=10% Similarity=-0.024 Sum_probs=93.5
Q ss_pred HHHHhCCChhhHHH-HHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCCh
Q 048090 59 SDFCRNGSPLYALK-TFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLI 137 (447)
Q Consensus 59 ~~~~~~~~~~~a~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 137 (447)
......+++++|.+ ++.. + |+......++..+.+.|..+.|.++.+. | ..-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~-----~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD-------Q-----DQKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------H-----HHHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC-------c-----chheehhhhcCCH
Confidence 44455778877766 4421 1 1122336666777777888877765531 1 1123445678888
Q ss_pred hhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 048090 138 HDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKC 217 (447)
Q Consensus 138 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 217 (447)
++|.++.+.+. +...|..+...+.+.++++.|.+.|.++.+ |..+...+...++.+...++-+.....
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~- 736 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT- 736 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 98888887764 457788888888888999998888888753 334444444466666655554444443
Q ss_pred hcCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 048090 218 CNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248 (447)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 248 (447)
+ -++....+|.+.|++++|.+++.
T Consensus 737 -~------~~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 737 -G------KFNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp -T------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -C------chHHHHHHHHHcCCHHHHHHHHH
Confidence 1 12333344555666666666655
No 223
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.23 E-value=0.0012 Score=59.81 Aligned_cols=89 Identities=8% Similarity=-0.121 Sum_probs=37.8
Q ss_pred CCcHHHHHHHHHHHHHhh-----hcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCC---cc-hhhHHHHHH
Q 048090 200 LSAAEFGRQVHAYMIRKC-----CNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN---KD-VVLWTSMLG 270 (447)
Q Consensus 200 ~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~-~~~~~~l~~ 270 (447)
.|++++|..++++.++.. +..+....+++.|..+|...|++++|+.+++++......-.. |+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 345555555555554431 111111234445555555555555555555443332221111 11 223444444
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 048090 271 VYGRNGYFKEVIKLYEAM 288 (447)
Q Consensus 271 ~~~~~g~~~~a~~~~~~m 288 (447)
.|...|++++|+.++++.
T Consensus 391 ~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHH
Confidence 455555555555444443
No 224
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.23 E-value=1.8e-06 Score=76.48 Aligned_cols=352 Identities=12% Similarity=0.092 Sum_probs=175.2
Q ss_pred CcchHHHhhccCCCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHH
Q 048090 35 NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114 (447)
Q Consensus 35 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 114 (447)
+++.|...-++.. .+..|..|..+....+.+.+|++.|-+. -|+..|..++.++.+.|.++.-..++....+
T Consensus 40 ~ldRa~eyA~~~n--~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk 111 (624)
T 3lvg_A 40 NLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK 111 (624)
T ss_dssp CSTTTTTSSSSCC--CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred ccHHHHHHHHHhC--CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4555555444443 3445666777777777777766654211 2455666777777777777776666665544
Q ss_pred cCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcC------------
Q 048090 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALG------------ 182 (447)
Q Consensus 115 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------ 182 (447)
.. .++.+=+.|+-+|++.++..+.++++.. ||..-...+..-|...|.++.|.-+|..+....
T Consensus 112 ~~--ke~~IDteLi~ayAk~~rL~elEefl~~---~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~y 186 (624)
T 3lvg_A 112 KA--RESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEY 186 (624)
T ss_dssp TC--CSTTTTHHHHHHHHTSCSSSTTTSTTSC---CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGG
T ss_pred Hh--cccccHHHHHHHHHhhCcHHHHHHHHcC---CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 32 2333335667777777776655544332 344444555555555555555554444432110
Q ss_pred --------CCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhc
Q 048090 183 --------LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254 (447)
Q Consensus 183 --------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 254 (447)
-.-++.||..+..+|...+.+..|.-.--.++-. +.-...++..|-..|.+++-+.+++.-...
T Consensus 187 q~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-------adeL~elv~~YE~~G~f~ELIsLlEaglgl- 258 (624)
T 3lvg_A 187 QAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-------ADELEELINYYQDRGYFEELITMLEAALGL- 258 (624)
T ss_dssp GSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-------SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-
T ss_pred HHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-------HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-
Confidence 0234556766667777666666655444333322 112233555566667777666666633221
Q ss_pred ccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH------h-c
Q 048090 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH------D-Y 327 (447)
Q Consensus 255 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------~-~ 327 (447)
.......|+-|.-.|++- ++++..+.++..-. +.|. -.+|++|.+..-|.++.-++..-.+ . -
T Consensus 259 ---ErAHmGmFTELaILYsKY-~PeKlmEHlklf~s---riNi---pKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi 328 (624)
T 3lvg_A 259 ---ERAHMGMFTELAILYSKF-KPQKMREHLELFWS---RVNI---PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 328 (624)
T ss_dssp ---TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSS---SSCC---TTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTT
T ss_pred ---CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHH---hccH---HHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHH
Confidence 334555666666666665 33443333332111 1111 1234444444444444433332100 0 0
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhh---------
Q 048090 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL--------- 398 (447)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------- 398 (447)
.-+|+..--..+-+...+..+.+--.+.+.--++.. | ...+-|+.++...=|+.++.+++++.-.+
T Consensus 329 ~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~--P---~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~ 403 (624)
T 3lvg_A 329 NHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK--P---LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRS 403 (624)
T ss_dssp SCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSC--C---TTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTS
T ss_pred hCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhC--h---HHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHH
Confidence 000010001111222233344333333333333322 3 22556666766666777777777764331
Q ss_pred --CCCchhHHHHHHHHHHhcCChHHH
Q 048090 399 --DPHNVGIYVMLSNLYAKFCMWDEI 422 (447)
Q Consensus 399 --~~~~~~~~~~l~~~~~~~g~~~~A 422 (447)
..++..+-.++-..|....+++.-
T Consensus 404 Vq~~N~~aVNeAln~L~IEEEDy~~L 429 (624)
T 3lvg_A 404 VQNHNNKSVNESLNNLFITEEDYQAL 429 (624)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhhhhhHHHH
Confidence 234556667777778888887644
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.21 E-value=0.0052 Score=45.24 Aligned_cols=113 Identities=11% Similarity=0.044 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHhccCcH------HHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHH------HcCCHHHHHHHHHHHHhC
Q 048090 296 DEVAFVTVISACSHTGQV------KLGIEYFEWMVHDYKLEPG-PEHYSCLVDLLC------RAGELDKAWKLINEMLDR 362 (447)
Q Consensus 296 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~------~~g~~~~A~~~~~~~~~~ 362 (447)
|..+|-..+....+.|++ +...++|++.... ++|+ ...|...|..+. ..++.++|.++|+.+++.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 667777777777777888 7888888888764 5665 334455554432 457788888888888765
Q ss_pred CCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHH
Q 048090 363 GHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNL 412 (447)
Q Consensus 363 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 412 (447)
+ ..-..+|......-.++|++..|.+++.+++.+.|.....+...++-
T Consensus 90 h--KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~n 137 (161)
T 4h7y_A 90 C--KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRN 137 (161)
T ss_dssp C--TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHH
T ss_pred h--HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHh
Confidence 3 22366677777888888888888888888888887776666655543
No 226
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.13 E-value=0.039 Score=39.74 Aligned_cols=141 Identities=13% Similarity=0.062 Sum_probs=99.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHH
Q 048090 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK 351 (447)
Q Consensus 272 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 351 (447)
+.-.|..++..++..+.... .+..-|+.+|.-....-+=+-..++++.+-+-+.+. .+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHH
Confidence 34467888888888887763 356667777766666666666777777775443322 3444444
Q ss_pred HHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 352 A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
....+-.+- . +...+..-+..+...|+-+.-.+++...+...++++.+...++.+|.+.|+..+|.+++.+..+
T Consensus 80 Vi~C~~~~n-----~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 80 VVECGVINN-----T-LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHTT-----C-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-----c-hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 444443321 1 2233666777888889988888888888777788999999999999999999999999999999
Q ss_pred cCCC
Q 048090 432 KGLK 435 (447)
Q Consensus 432 ~~~~ 435 (447)
.|++
T Consensus 154 kG~k 157 (172)
T 1wy6_A 154 KGEK 157 (172)
T ss_dssp TTCH
T ss_pred hhhH
Confidence 8874
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.12 E-value=0.0087 Score=44.08 Aligned_cols=103 Identities=15% Similarity=0.186 Sum_probs=62.6
Q ss_pred CCcchhhHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCH-HHHHHHHHH---H---hccCcHHHHHHHHHHHH
Q 048090 258 INKDVVLWTSMLGVYGRNGYF------KEVIKLYEAMLMNGTKPDE-VAFVTVISA---C---SHTGQVKLGIEYFEWMV 324 (447)
Q Consensus 258 ~~~~~~~~~~l~~~~~~~g~~------~~a~~~~~~m~~~~~~p~~-~~~~~ll~~---~---~~~~~~~~a~~~~~~~~ 324 (447)
.+.|..+|-..+...-+.|++ ++..++|++.... ++|+. ..+...+.. | ...+++++|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 355667777777777777777 6777777777664 45542 112222221 1 23467777777777776
Q ss_pred HhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048090 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRG 363 (447)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 363 (447)
+. .-+- ...|....+--.+.|++..|.+++.+.+..+
T Consensus 88 ~~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 88 AN-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HH-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HH-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 54 2222 5556555665667777777777777777766
No 228
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.09 E-value=0.21 Score=47.42 Aligned_cols=255 Identities=6% Similarity=-0.064 Sum_probs=134.1
Q ss_pred hHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCc
Q 048090 123 VGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202 (447)
Q Consensus 123 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 202 (447)
.-+.-+..+.+.+++.....++.. ...+...-.....+....|+..+|....+.+-..| ...+..+..++..+.+.|.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCC
Confidence 334455667778888888887776 44455556667777778888777777666665444 3344566667777665544
Q ss_pred HHH--HHHHHHHHHHhh---------hcCCCChh-HHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchh---hHHH
Q 048090 203 AEF--GRQVHAYMIRKC---------CNLGNDVF-MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV---LWTS 267 (447)
Q Consensus 203 ~~~--a~~~~~~~~~~~---------~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~~~~ 267 (447)
+.. ...-++.+...+ ..++++.. ....++..+ .++..+..... . ..++.. .+..
T Consensus 152 lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~---~~p~~~~~~~~---~-----~~~~~~~~~~~~~ 220 (618)
T 1qsa_A 152 QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLA---NNPNTVLTFAR---T-----TGATDFTRQMAAV 220 (618)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHH---HCGGGHHHHHH---H-----SCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHH---hChHhHHHHHh---c-----cCCChhhHHHHHH
Confidence 322 222222222220 01111111 111111111 11222222221 0 122211 1112
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 048090 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA----FVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343 (447)
Q Consensus 268 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 343 (447)
.+.-+.+ .+.+.|...+....... ..+... ...+.......+...++...+...... .++.....-.+...
T Consensus 221 ~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~A 295 (618)
T 1qsa_A 221 AFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMA 295 (618)
T ss_dssp HHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHH
T ss_pred HHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHH
Confidence 2233333 36788888888876543 223222 223333344445355666666665433 34443444455555
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 048090 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE 397 (447)
Q Consensus 344 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 397 (447)
.+.|+++.|...|+.|.... +.......=+..++...|+.++|..+|+++.+
T Consensus 296 lr~~d~~~a~~~~~~l~~~~--~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEA--KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTG--GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHccccc--cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 67788999988888886543 22333344566677788888888888888865
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.99 E-value=0.0055 Score=44.02 Aligned_cols=103 Identities=14% Similarity=0.028 Sum_probs=72.2
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHH---HHHHHHHHHhCCCCC-CchHhHHHHHHH
Q 048090 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK---AWKLINEMLDRGHGS-SSVSMWGALLSA 378 (447)
Q Consensus 303 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p-~~~~~~~~l~~~ 378 (447)
++...........+.+.|...... + .++..+--.+..++.+..+... ++.+++++.+.+- | ........|.-+
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-p~~~Rd~lY~LAvg 83 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-KEEQRDYVFYLAVG 83 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHH
Confidence 334444455566666777666554 3 3777777777778888776655 8888888877641 2 344556778888
Q ss_pred HHhcCCccHHHHHHHHHhhhCCCchhHHHH
Q 048090 379 CHDCGKFELGKLAAQKALELDPHNVGIYVM 408 (447)
Q Consensus 379 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 408 (447)
+.+.|++++|.+.++.+++..|.|..+...
T Consensus 84 ~yklg~Y~~A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 84 NYRLKEYEKALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 889999999999999999999887765443
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.99 E-value=0.0095 Score=42.79 Aligned_cols=82 Identities=16% Similarity=0.080 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH---HHHHHHHHHHhcCCCC--ChhhHHHHHHHHHHcCCHHHHH
Q 048090 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL---GIEYFEWMVHDYKLEP--GPEHYSCLVDLLCRAGELDKAW 353 (447)
Q Consensus 279 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 353 (447)
..+.+-|.+....|. |+..+-..+..++.++.+... ++.+++.+.+. + .| .....-.|.-++.+.|++++|.
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 334444444333332 344444444444444443333 45555554432 1 12 1222233334455555555555
Q ss_pred HHHHHHHhCC
Q 048090 354 KLINEMLDRG 363 (447)
Q Consensus 354 ~~~~~~~~~~ 363 (447)
+.++.+++..
T Consensus 95 ~~~~~lL~~e 104 (126)
T 1nzn_A 95 KYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 5555555544
No 231
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.95 E-value=0.0084 Score=53.73 Aligned_cols=341 Identities=10% Similarity=0.028 Sum_probs=182.6
Q ss_pred hhHHHhhhhhhhhhcccccCCcchH-------------HHhhcc------------CC----------------------
Q 048090 15 CLIIFQSRLMLPYTTCRHKKNLGTL-------------TNCLKF------------LN---------------------- 47 (447)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~~~~A-------------~~~~~~------------~~---------------------- 47 (447)
.++.+.+.|+-+|++.++.+++++- .++|++ +.
T Consensus 114 ke~~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaA 193 (624)
T 3lvg_A 114 RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGA 193 (624)
T ss_dssp CSTTTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTT
T ss_pred cccccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999986666542 123322 10
Q ss_pred --CCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHH
Q 048090 48 --PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGS 125 (447)
Q Consensus 48 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 125 (447)
..++.+|.-+-.+|...+++..|.-.--.+.-+ ......++..|-..|-+++-..+++..+.. -......|+
T Consensus 194 rKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFT 267 (624)
T 3lvg_A 194 RKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFT 267 (624)
T ss_dssp TTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHH
T ss_pred HhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHH
Confidence 135667777777777777777666655444322 122334555667777777777777766532 134566777
Q ss_pred HHHHHHHccCChhhHHHHhccC----CCC-------chhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHH
Q 048090 126 ALIDLYAKLLLIHDAELMFDEI----PVK-------NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALL 194 (447)
Q Consensus 126 ~l~~~~~~~g~~~~a~~~~~~~----~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 194 (447)
-|.-.|++- ++++..+-++.. .-| ....|..++-.|.+-.+++.|... |.+. +|+......+-
T Consensus 268 ELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h--~~~Aw~h~~Fk 341 (624)
T 3lvg_A 268 ELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFK 341 (624)
T ss_dssp HHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSC--HHHHCCGGGGT
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhC--ChhhccHHHHH
Confidence 777777765 444444444332 222 455688888888888888877532 3332 22222222233
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhc------cc-CCCcchhhHHH
Q 048090 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL------EG-EINKDVVLWTS 267 (447)
Q Consensus 195 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~-~~~~~~~~~~~ 267 (447)
....+..+.+---+.....++. .+...+-|+.++...=+...+.++|.+..... .. ....+...-.+
T Consensus 342 dii~KVaN~EiyYKAi~FYL~e------~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeA 415 (624)
T 3lvg_A 342 DIITKVANVELYYRAIQFYLEF------KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNES 415 (624)
T ss_dssp TTGGGCSCSHHHHHHHHHHTTS------CCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHH
T ss_pred HHHHHcchHHHHHHHHHHHHHh------ChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHH
Confidence 3333444443333333322222 23334556666655556666666666432210 00 01112233344
Q ss_pred HHHHHHhcCCHHHHH------------HHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhh
Q 048090 268 MLGVYGRNGYFKEVI------------KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335 (447)
Q Consensus 268 l~~~~~~~g~~~~a~------------~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 335 (447)
+-..|....+++.-. .+-+++.++ +-...-......|.+.++|++++.+.+ ....
T Consensus 416 ln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH---eL~eFRrIAA~LYkkn~rw~qsi~l~K----------kDkl 482 (624)
T 3lvg_A 416 LNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH---ELIEFRRIAAYLFKGNNRWKQSVELCK----------KDSL 482 (624)
T ss_dssp HHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC---SSHHHHHHHHHHHHTTCHHHHHSSCSS----------TTCC
T ss_pred HHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC---chHHHHHHHHHHHHhcccHHHHHHHHH----------hccc
Confidence 555666666655332 222233221 111222223334556677766665432 1122
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHH
Q 048090 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKL 390 (447)
Q Consensus 336 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 390 (447)
|.-.|.....+|+.+-|.++++-.++.| +...|.+.+..|...=+++-+.+
T Consensus 483 ykDAietAa~S~~~elaeeLL~yFv~~g----~~EcF~a~LytCYdLlrpDvVlE 533 (624)
T 3lvg_A 483 YKDAMQYASESKDTELAEELLQWFLQEE----KRECFGACLFTCYDLLRPDVVLE 533 (624)
T ss_dssp TTGGGTTTTTCCCTTHHHHHHHHHHHHC----STHHHHHHHHHTSSSSSCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC----chHHHHHHHHHHhhccChHHHHH
Confidence 3334555667778888888887777766 34446677777766666665544
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.88 E-value=0.011 Score=41.34 Aligned_cols=77 Identities=13% Similarity=0.083 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC-----CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchH
Q 048090 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK-----LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVS 370 (447)
Q Consensus 296 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 370 (447)
+..-+..+...+...+++..|...|+.+.+... -.+....+..|..++.+.|+++.|..+++++.+.. |++..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~--P~~~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--PEHQR 81 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHH
Confidence 334445666666777777777777777665321 12335667778888888888888888888887765 77766
Q ss_pred hHHH
Q 048090 371 MWGA 374 (447)
Q Consensus 371 ~~~~ 374 (447)
+...
T Consensus 82 ~~~n 85 (104)
T 2v5f_A 82 ANGN 85 (104)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 4433
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.87 E-value=0.0059 Score=50.96 Aligned_cols=109 Identities=17% Similarity=0.121 Sum_probs=78.1
Q ss_pred cHHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCc-hHhHHHHHHHHHhc
Q 048090 312 QVKLGIEYFEWMVHDYKLEPG---PEHYSCLVDLLCRA-----GELDKAWKLINEMLDRGHGSSS-VSMWGALLSACHDC 382 (447)
Q Consensus 312 ~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~-~~~~~~l~~~~~~~ 382 (447)
....|...+++..+ +.|+ ...|..|...|.+. |+.++|.+.|++.++.+ |+. ..++..+...++..
T Consensus 178 ~l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln--P~~~id~~v~YA~~l~~~ 252 (301)
T 3u64_A 178 TVHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC--SAHDPDHHITYADALCIP 252 (301)
T ss_dssp HHHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC--CTTCSHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC--CCCCchHHHHHHHHHHHh
Confidence 35667777777774 3666 56788888888884 89999999999999887 764 77888889988884
Q ss_pred -CCccHHHHHHHHHhhhCCCc-hhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 383 -GKFELGKLAAQKALELDPHN-VGIYVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 383 -g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
|+.+++.+.+++++...|.. +. ..+ ...+.-++|..++.++.+
T Consensus 253 ~gd~~~a~~~L~kAL~a~p~~~P~--~~l----an~~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 253 LNNRAGFDEALDRALAIDPESVPH--NKL----LVILSQKRARWLKAHVQD 297 (301)
T ss_dssp TTCHHHHHHHHHHHHHCCGGGCSS--CHH----HHHHHHHHHHHHHHTHHH
T ss_pred cCCHHHHHHHHHHHHcCCCCCCCC--hhH----HHHHHHHHHHHHHHHhHH
Confidence 89999999999999877542 21 122 222234566666665543
No 234
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.74 E-value=0.079 Score=52.63 Aligned_cols=99 Identities=14% Similarity=0.084 Sum_probs=54.4
Q ss_pred HHhcCCHHHHHH-HHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCCh
Q 048090 162 YCEAKLWAGGLE-LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240 (447)
Q Consensus 162 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (447)
....+++++|.+ ++..+. +......++..+.+.|.++.|.++.+.-.. -.......|++
T Consensus 609 ~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~--------------~f~~~l~~~~~ 668 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQDQ--------------KFELALKVGQL 668 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHHH--------------HHHHHHHHTCH
T ss_pred HHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcch--------------heehhhhcCCH
Confidence 345566666655 332211 011224555556666666666654421111 12234556777
Q ss_pred HHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048090 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289 (447)
Q Consensus 241 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 289 (447)
+.|.++.+ ...+...|..+...+.+.++++.|++.|.++.
T Consensus 669 ~~A~~~~~---------~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 669 TLARDLLT---------DESAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHT---------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHH---------hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 77777655 22345667777777777777777777777653
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.18 Score=38.71 Aligned_cols=103 Identities=8% Similarity=-0.086 Sum_probs=59.6
Q ss_pred HHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHH
Q 048090 128 IDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207 (447)
Q Consensus 128 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 207 (447)
.......|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.++..
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34445667777777766655 3456677777777777777777777776653 223333333445555555
Q ss_pred HHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 048090 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249 (447)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 249 (447)
++-+..... | -++.....+...|+++++.++|.+
T Consensus 81 kla~iA~~~--g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTR--E------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHT--T------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHC--c------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444333 1 133444455566777777777763
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.28 E-value=1 Score=44.63 Aligned_cols=258 Identities=7% Similarity=-0.128 Sum_probs=120.0
Q ss_pred HHHhcCCHHHHHHHHHhhhhcCCCCcH--hhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcC-----CCChhHHHHH--H
Q 048090 161 GYCEAKLWAGGLELVRLMPALGLDYDH--FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL-----GNDVFMQSSL--I 231 (447)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~l--~ 231 (447)
+....|+.++++.++......+-..+. ..-..+.-+....|..+.+..++...+...... .+....-.++ .
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 455667777777777766542101122 222222233344454456677666666542100 0111222222 2
Q ss_pred HHHHhcCChHHHHHHHHhhhhhcccCCCcchh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--H
Q 048090 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVV--LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA--C 307 (447)
Q Consensus 232 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~ 307 (447)
.+|.-.++. ++.+.+..+... ..+... .--.+...++..|+.+....++..+.+.. +......+.-+ +
T Consensus 463 la~~GS~~e-ev~e~L~~~L~d----d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGl 534 (963)
T 4ady_A 463 LAAMGSANI-EVYEALKEVLYN----DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLAL 534 (963)
T ss_dssp HHSTTCCCH-HHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHH
T ss_pred HHhcCCCCH-HHHHHHHHHHhc----CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHh
Confidence 233333443 333333322111 111111 11223344556677777777777666531 33333333333 3
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCChhhHH--HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCc
Q 048090 308 SHTGQVKLGIEYFEWMVHDYKLEPGPEHYS--CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385 (447)
Q Consensus 308 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 385 (447)
...|+.+.+..+.+.+... ..|....-. ++.-+|+..|+.....+++..+.... -+++...-.+.-++...|+.
T Consensus 535 l~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~--~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 535 INYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS--NDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTSSSC
T ss_pred hhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHhhccCCH
Confidence 3567777777777776542 123222222 23345566777766666777776652 12333233333344456666
Q ss_pred cHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 048090 386 ELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMW-DEIGQLRELMK 430 (447)
Q Consensus 386 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~ 430 (447)
+.+.++++...+..-+..+.-..++.+....|.. .+|+.++..+.
T Consensus 611 e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 611 TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 6566666544443333333334444444444443 45666666664
No 237
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.37 Score=37.00 Aligned_cols=128 Identities=12% Similarity=0.074 Sum_probs=84.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHH
Q 048090 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350 (447)
Q Consensus 271 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 350 (447)
...+.|+++.|.++.+++ .+...|..|.......|+++-|...|.+... +..+.-.|.-.|+.+
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHH
Confidence 345678888888887765 2567888888888888888888888887731 445555677778877
Q ss_pred HHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048090 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELM 429 (447)
Q Consensus 351 ~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 429 (447)
....+-+.....|- ++.-...+.-.|+++++.+++.+.-+ +..-.......|-.+.|.++.+++
T Consensus 78 ~L~kla~iA~~~g~-------~n~af~~~l~lGdv~~~i~lL~~~~r--------~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRED-------FGSMLLNTFYNNSTKERSSIFAEGGS--------LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTTC-------HHHHHHHHHHHTCHHHHHHHHHHTTC--------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcc-------HHHHHHHHHHcCCHHHHHHHHHHCCC--------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 77776666665551 55666677778888888888865432 111111222355666677776655
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.90 E-value=0.11 Score=46.49 Aligned_cols=69 Identities=13% Similarity=-0.002 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCCcc
Q 048090 372 WGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE-----KGLKKDVGC 440 (447)
Q Consensus 372 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 440 (447)
...++.++...|+++++...++.++..+|-+...|..++.+|.+.|+..+|++.|++..+ .|+.|.+.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 556778888999999999999999999999999999999999999999999999988754 588888654
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.88 E-value=0.29 Score=47.41 Aligned_cols=54 Identities=15% Similarity=0.062 Sum_probs=43.9
Q ss_pred HHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048090 376 LSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELM 429 (447)
Q Consensus 376 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 429 (447)
...|...|+++.|..+.+++...-|.+..+|..|+.+|...|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 445667788888888888888888888888888888888888888888777766
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.50 E-value=0.22 Score=35.92 Aligned_cols=75 Identities=11% Similarity=0.095 Sum_probs=51.1
Q ss_pred CCChhhHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCC-CchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhH
Q 048090 330 EPGPEHYSCLVDLLCRAGE---LDKAWKLINEMLDRGHGS-SSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405 (447)
Q Consensus 330 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 405 (447)
.|+..+--.+..++.+..+ ..+++.+++++.+.+ | .....+..|.-++.+.|++++|.+..+.+++..|.|..+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 4555555555666666654 345777777777655 4 234456777778888888888888888888888877654
Q ss_pred H
Q 048090 406 Y 406 (447)
Q Consensus 406 ~ 406 (447)
.
T Consensus 115 ~ 115 (134)
T 3o48_A 115 G 115 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.32 E-value=1.2 Score=40.51 Aligned_cols=195 Identities=10% Similarity=0.073 Sum_probs=112.1
Q ss_pred cCCHHHHHHHHHhhhhc-----CCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHH----H
Q 048090 165 AKLWAGGLELVRLMPAL-----GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY----G 235 (447)
Q Consensus 165 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~ 235 (447)
.++++.|++.+..+.+. +..........++..|...++++...+.+..+.+.. |.. ......+++.+ .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr-~ql--k~ai~~~V~~~~~~l~ 105 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH-GQL--KLSIQYMIQKVMEYLK 105 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT-TTS--HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-hhh--HHHHHHHHHHHHHHHh
Confidence 36788888877665432 234456667778888888899988888777665542 221 22223333322 2
Q ss_pred hcCChH--HHHHHHHhhhhhcccCCCcc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHH
Q 048090 236 KCGLVT--KALQVFNLAGHRLEGEINKD---VVLWTSMLGVYGRNGYFKEVIKLYEAMLMN--GTKPD---EVAFVTVIS 305 (447)
Q Consensus 236 ~~g~~~--~A~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~p~---~~~~~~ll~ 305 (447)
.....+ .-..+.+.+....++.+-.. ......|...+...|++.+|.+++..+... |..+. ...+...++
T Consensus 106 ~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 106 SSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp HHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 233322 22233332222111111111 112345677788888888888888887543 22221 235666677
Q ss_pred HHhccCcHHHHHHHHHHHHHh-cCC--CCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048090 306 ACSHTGQVKLGIEYFEWMVHD-YKL--EPG--PEHYSCLVDLLCRAGELDKAWKLINEMLDR 362 (447)
Q Consensus 306 ~~~~~~~~~~a~~~~~~~~~~-~~~--~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 362 (447)
.|...+++..|..++.++... ... .|+ ...+...+..+...+++.+|-..|.++...
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 788888888888888876431 111 222 234566667777788888888777776554
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.18 Score=48.74 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=40.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHH
Q 048090 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKA 395 (447)
Q Consensus 342 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 395 (447)
-+...|+++.|+++.++....- |.+..+|..|..+|...|+++.|+-.+..+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3556788888888888887765 888888888888888888888888777654
No 243
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.12 E-value=0.078 Score=39.99 Aligned_cols=28 Identities=7% Similarity=0.062 Sum_probs=23.6
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048090 402 NVGIYVMLSNLYAKFCMWDEIGQLRELM 429 (447)
Q Consensus 402 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m 429 (447)
+...-..+..+|.+.|++++|+.+++.+
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 4466778999999999999999988865
No 244
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.11 E-value=0.66 Score=33.96 Aligned_cols=75 Identities=11% Similarity=0.095 Sum_probs=55.4
Q ss_pred CCChhhHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCC-CchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhH
Q 048090 330 EPGPEHYSCLVDLLCRAGE---LDKAWKLINEMLDRGHGS-SSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405 (447)
Q Consensus 330 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 405 (447)
.|+..+--.+..++.+..+ ..+++.+++++.+.+ | ........|.-++.+.|++++|.+..+.+++..|.|..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~--~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC--CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666666677777665 446777888877755 4 344456778888999999999999999999999988754
Q ss_pred H
Q 048090 406 Y 406 (447)
Q Consensus 406 ~ 406 (447)
.
T Consensus 114 ~ 114 (144)
T 1y8m_A 114 G 114 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.87 E-value=2.2 Score=38.76 Aligned_cols=188 Identities=9% Similarity=0.043 Sum_probs=116.0
Q ss_pred cCChhhHHHHhccCC---------CCchhhHHHHHHHHHhcCCHHHHHHHHHhhhh-cCCCCcHhhHHHHHHHHh----c
Q 048090 134 LLLIHDAELMFDEIP---------VKNSVCANALLSGYCEAKLWAGGLELVRLMPA-LGLDYDHFTLSALLRACA----G 199 (447)
Q Consensus 134 ~g~~~~a~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~----~ 199 (447)
.|+++.|++.+-.+. .........++..|...++++...+.+..+.+ .|..+.. ...+++.+. .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhc
Confidence 367888877764443 11345577888999999999999887766643 3333222 334444332 2
Q ss_pred CCcHHHHHHHHHHHHHhhhcCCC--------ChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcc---hhhHHHH
Q 048090 200 LSAAEFGRQVHAYMIRKCCNLGN--------DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD---VVLWTSM 268 (447)
Q Consensus 200 ~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~l 268 (447)
....+.. ........-..... .......|...|...|++.+|.+++..+..... +.... +..+...
T Consensus 107 ~~~~d~~--~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~-~~~~~~~kve~~l~q 183 (445)
T 4b4t_P 107 SKSLDLN--TRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETY-GSMEMSEKIQFILEQ 183 (445)
T ss_dssp HCTTHHH--HHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-SSSCHHHHHHHHHHH
T ss_pred CCchhHH--HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHH
Confidence 2221211 11112221001111 122346788999999999999999997654322 11111 3456777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 048090 269 LGVYGRNGYFKEVIKLYEAMLM----NGTKPD--EVAFVTVISACSHTGQVKLGIEYFEWMVHD 326 (447)
Q Consensus 269 ~~~~~~~g~~~~a~~~~~~m~~----~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 326 (447)
+..|...+++.+|..+++++.. ....|+ ...+...+..+...+++.+|...|.++...
T Consensus 184 ~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 184 MELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 8889999999999999998743 222333 234566677778889999999888888654
No 246
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.83 E-value=3.5 Score=40.94 Aligned_cols=125 Identities=10% Similarity=-0.041 Sum_probs=56.8
Q ss_pred HHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHh
Q 048090 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA--FVTVISACS 308 (447)
Q Consensus 231 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~ 308 (447)
...+.-.|+.+....++..+... ...++.-...+.-++...|+.+.+..+.+.+... ..|.... -..+.-+|+
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~----~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAya 571 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQET----QHGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYA 571 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTT
T ss_pred hhhhcccCCHHHHHHHHHHHhcc----CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhc
Confidence 33444556665555555533221 1112222333333444566666666666666542 1221111 112233555
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048090 309 HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362 (447)
Q Consensus 309 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 362 (447)
..|+.....+++..+..+ ...++.....+.-++...|+.+.+.++++.+...
T Consensus 572 GTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~ 623 (963)
T 4ady_A 572 GTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS 623 (963)
T ss_dssp TSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC
T ss_pred CCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc
Confidence 666666555566666542 1222332333333344455555555555544443
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.67 E-value=0.76 Score=33.61 Aligned_cols=69 Identities=7% Similarity=-0.032 Sum_probs=56.5
Q ss_pred CchHhHHHHHHHHHhcCCc---cHHHHHHHHHhhhCCC-chhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048090 367 SSVSMWGALLSACHDCGKF---ELGKLAAQKALELDPH-NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437 (447)
Q Consensus 367 ~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 437 (447)
++..+-..+..++.+..+. .++..+++...+..|. .......|+.++.+.|++++|.++.+.+.+ ++|+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~ 109 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 109 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence 3555677788888887754 5788899999988874 667888889999999999999999999987 5665
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.69 E-value=0.41 Score=34.54 Aligned_cols=68 Identities=7% Similarity=-0.038 Sum_probs=55.7
Q ss_pred chHhHHHHHHHHHhcCCc---cHHHHHHHHHhhhCCC-chhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048090 368 SVSMWGALLSACHDCGKF---ELGKLAAQKALELDPH-NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437 (447)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 437 (447)
+..+-..+..++.+..+. .+++.+++...+.+|. ....+..|+.++.+.|++++|.+..+.+.+ +.|+
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 555567788888887754 5688899999988874 577889999999999999999999999886 5665
No 249
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.48 E-value=1.5 Score=31.70 Aligned_cols=64 Identities=16% Similarity=0.111 Sum_probs=38.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 048090 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364 (447)
Q Consensus 299 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 364 (447)
.+...+..+...|+-++-.+++..+.. +.+|++...-.+..+|.+.|+..+|.+++.++-+.|+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344455555666666666666666432 3456666666666677777777777777777666664
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.28 E-value=3.3 Score=42.86 Aligned_cols=175 Identities=11% Similarity=0.044 Sum_probs=109.1
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCC-------------------CcchhhHHHHHHHHHhcCCHHHH
Q 048090 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI-------------------NKDVVLWTSMLGVYGRNGYFKEV 281 (447)
Q Consensus 221 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------------------~~~~~~~~~l~~~~~~~g~~~~a 281 (447)
+.++...-.+..++...|++++|.++|++......... ..-..-|..++..+.+.+.++.+
T Consensus 839 ~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~v 918 (1139)
T 4fhn_B 839 NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDA 918 (1139)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHH
T ss_pred cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHH
Confidence 34555556678889999999999999986533211110 00113467788888899999999
Q ss_pred HHHHHHHHhCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHH------
Q 048090 282 IKLYEAMLMNGTKPDE----VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK------ 351 (447)
Q Consensus 282 ~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~------ 351 (447)
.++-+...+....-+. ..|..+..++...|++++|...+-.+... .--......|+..+|..|..+.
T Consensus 919 i~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~~r~~cLr~LV~~lce~~~~~~L~~lpf 995 (1139)
T 4fhn_B 919 LEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---PLKKSCLLDFVNQLTKQGKINQLLNYSM 995 (1139)
T ss_dssp HHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---SSCHHHHHHHHHHHHHHCCHHHHHHHTT
T ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHhCCChhhhhCCCC
Confidence 9888777664222121 25778889999999999999998877543 3345667778777776665543
Q ss_pred ------HHHHHHHHHh-CCCCCCchHhHHHHHHHHHhcCCccHHH-HHHHHHhhh
Q 048090 352 ------AWKLINEMLD-RGHGSSSVSMWGALLSACHDCGKFELGK-LAAQKALEL 398 (447)
Q Consensus 352 ------A~~~~~~~~~-~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~ 398 (447)
..+++..-.+ .......+..|..|-.-+..+|++..|. .+|+.+.++
T Consensus 996 ~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 996 PTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 3334332211 1000111233555566666788877654 556666554
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.24 E-value=0.53 Score=35.53 Aligned_cols=134 Identities=11% Similarity=0.052 Sum_probs=72.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC-------HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCCh-hh
Q 048090 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNG-TKPD-------EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP-EH 335 (447)
Q Consensus 265 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~ 335 (447)
+..-+..+...|.++.|+-+.+.+.... ..|+ ..++..+.+++...+++..|...|++.++....-+.. ..
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3445667778888888888777754431 2233 1356677778888899999999888876543322221 11
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHH
Q 048090 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413 (447)
Q Consensus 336 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 413 (447)
+..+. ....... .... +.+...-..+..+|.+.+++++|+.+++.+-... .++.+-..|++.|
T Consensus 103 ~~~~~----~~ss~p~---------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~-Rt~kvnm~LakLy 165 (167)
T 3ffl_A 103 RPSTG----NSASTPQ---------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ-RTPKINMLLANLY 165 (167)
T ss_dssp ---------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG-CCHHHHHHHHHHC
T ss_pred ccccc----ccCCCcc---------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh-cCHHHHHHHHHHh
Confidence 11110 0000000 0011 3344455667888888888888888776542211 1444444555443
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.07 E-value=1.7 Score=38.60 Aligned_cols=55 Identities=11% Similarity=0.036 Sum_probs=25.6
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048090 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359 (447)
Q Consensus 303 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 359 (447)
++.++...|+++++...+..+... -+.+...|..+|.++.+.|+..+|++.|++.
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333444445555555544444432 1223444555555555555555555555443
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.92 E-value=0.76 Score=37.85 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=77.1
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCC
Q 048090 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384 (447)
Q Consensus 305 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 384 (447)
....+.|+++++++....-++. -+-|...-..|++.+|-.|+++.|.+-++-..+.. |.... ....|..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~----~a~~yr~--- 73 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLP----GASQLRH--- 73 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHH----HHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhH----HHHHHHH---
Confidence 4567889999999998888775 24568888899999999999999999999988876 53332 1112211
Q ss_pred ccHHHHHHHHHhhhC--C---C-chhHHHHHHHHH--HhcCChHHHHHHHHHHHHc
Q 048090 385 FELGKLAAQKALELD--P---H-NVGIYVMLSNLY--AKFCMWDEIGQLRELMKEK 432 (447)
Q Consensus 385 ~~~a~~~~~~~~~~~--~---~-~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~ 432 (447)
.-.|+..-+++..-+ | . .......++.+. ...|+.++|.++-.++.+.
T Consensus 74 lI~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 74 LVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 111333334444422 2 1 233444455544 4569999999998888653
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.10 E-value=2.5 Score=28.67 Aligned_cols=63 Identities=16% Similarity=0.054 Sum_probs=47.4
Q ss_pred CHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHH
Q 048090 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232 (447)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (447)
|.=+..+-++.+....+.|++......+++|.+.+++..|.++++.+... ......+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K---~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK---AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---hcCchhhHHHHHH
Confidence 45566677777777778899999999999999999999999999888776 3334455665554
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.03 E-value=11 Score=39.14 Aligned_cols=133 Identities=14% Similarity=0.109 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 048090 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD--VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302 (447)
Q Consensus 225 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 302 (447)
.-|..++..+.+.+.++.+.++-..+......+ .++ ...|..+..++...|++++|...+-.+.....+ ...+..
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~-~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~ 976 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETD-DEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC-CHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC-ChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHH
Confidence 346667777777888888777766544432211 111 225777888888888888888888777664433 344555
Q ss_pred HHHHHhccC------------cHHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHHcCCHHHHHH-HHHHHH
Q 048090 303 VISACSHTG------------QVKLGIEYFEWMVHDY-KLEPGPEHYSCLVDLLCRAGELDKAWK-LINEML 360 (447)
Q Consensus 303 ll~~~~~~~------------~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 360 (447)
|+...|..| ..++..+++..-.+.. .....+.-|..|-.-+...|++..|-. +|+.+.
T Consensus 977 LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 977 FVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 665555444 3444455554332210 112223345555555566777665544 455544
No 256
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.84 E-value=2.6 Score=28.40 Aligned_cols=89 Identities=12% Similarity=-0.136 Sum_probs=64.5
Q ss_pred CCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhh
Q 048090 99 VKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178 (447)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (447)
....++|.-+-+.+...+- ...+--+-+..+...|++++|..+.+.+.-||...|-+|... +.|..+++..-+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 3456778888887777552 222223334567788999999999999999999998887664 788888888888788
Q ss_pred hhcCCCCcHhhHHH
Q 048090 179 PALGLDYDHFTLSA 192 (447)
Q Consensus 179 ~~~~~~~~~~~~~~ 192 (447)
...| .|....|..
T Consensus 95 a~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 95 GGSS-DPALADFAA 107 (115)
T ss_dssp HTCS-SHHHHHHHH
T ss_pred HhCC-CHHHHHHHH
Confidence 7776 555555543
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.83 E-value=2.6 Score=38.05 Aligned_cols=103 Identities=11% Similarity=-0.073 Sum_probs=69.4
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHH--
Q 048090 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT-- 266 (447)
Q Consensus 189 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-- 266 (447)
+...+...+.+.|+++.|.+.+.++.....+...-...+...+..+...+++..+...++++......+..++....-
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 455677777788888888888888877643444445677778888888888888888888877665555444433211
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 048090 267 SMLGVYGRNGYFKEVIKLYEAMLMN 291 (447)
Q Consensus 267 ~l~~~~~~~g~~~~a~~~~~~m~~~ 291 (447)
.-...+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122334578888888888776554
No 258
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.72 E-value=2.8 Score=28.48 Aligned_cols=63 Identities=14% Similarity=0.195 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048090 277 YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341 (447)
Q Consensus 277 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 341 (447)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++|+-++.+. .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 445666777777777888999999999999999999999999999887653 333556776664
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.59 E-value=2.8 Score=28.32 Aligned_cols=89 Identities=9% Similarity=-0.174 Sum_probs=64.4
Q ss_pred CCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhh
Q 048090 99 VKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178 (447)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (447)
....++|.-+-+.+...+- ...+--+-+..+...|++++|..+.+.+.-||...|-+|... +.|..+++..-+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 3466788888887777552 222223334567788999999999999999999998887664 778888888888788
Q ss_pred hhcCCCCcHhhHHH
Q 048090 179 PALGLDYDHFTLSA 192 (447)
Q Consensus 179 ~~~~~~~~~~~~~~ 192 (447)
...| .|....|..
T Consensus 96 a~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 96 ARSQ-DPRIQTFVN 108 (116)
T ss_dssp TTCC-CHHHHHHHH
T ss_pred HhCC-CHHHHHHHH
Confidence 7776 555555543
No 260
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=89.62 E-value=6.1 Score=32.79 Aligned_cols=93 Identities=14% Similarity=0.129 Sum_probs=42.7
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCchHh-HHHHHHHHHhcCCccHHHHHHH-HHhhhCCCchhHHHHHHHHHHhcCChH
Q 048090 343 LCRAGELDKAWKLINEMLDRGHGSSSVSM-WGALLSACHDCGKFELGKLAAQ-KALELDPHNVGIYVMLSNLYAKFCMWD 420 (447)
Q Consensus 343 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~ 420 (447)
.+..|+.....++++.+.+.|..++.... -.+.+...+..|+.+-+..+++ .....+..+..-...+- ...+.|+.
T Consensus 189 a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~-~A~~~~~~- 266 (285)
T 1wdy_A 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL-LAVELKLK- 266 (285)
T ss_dssp HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHH-HHHHTTCH-
T ss_pred HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHH-HHHHcCcH-
Confidence 34455544445566666666544321110 1122333445666665555554 22222212222222222 23345554
Q ss_pred HHHHHHHHHHHcCCCCCCcc
Q 048090 421 EIGQLRELMKEKGLKKDVGC 440 (447)
Q Consensus 421 ~A~~~~~~m~~~~~~p~~~~ 440 (447)
++.+-+.+.|..|+...
T Consensus 267 ---~i~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 267 ---KIAELLCKRGASTDCGD 283 (285)
T ss_dssp ---HHHHHHHHHSSCSCCSS
T ss_pred ---HHHHHHHHcCCCCCccc
Confidence 44566677788887654
No 261
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=89.08 E-value=16 Score=34.74 Aligned_cols=382 Identities=10% Similarity=-0.054 Sum_probs=178.8
Q ss_pred hhhhhhhhcccccCCcchHHHhhccCCCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCC
Q 048090 21 SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK 100 (447)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 100 (447)
+..+..+++.+ ++.....++.. ++.+...-.....+....|+..+|......+-..|. ..+.....++..+.+.|
T Consensus 76 ~~~l~~l~~~~---~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 76 SRFVNELARRE---DWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHTT---CHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCC---CHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCC
Confidence 34444445433 46666665555 334444444456666667776666666666655442 23344555555555444
Q ss_pred chhHH--HHHHHHHHHcC-----------CCCchhhH-HHHHHHHHccCChhhHHHHhccCCCC--chhhHHHHHHHHHh
Q 048090 101 DARFG--KQVQAHVTKSG-----------WLSSVFVG-SALIDLYAKLLLIHDAELMFDEIPVK--NSVCANALLSGYCE 164 (447)
Q Consensus 101 ~~~~a--~~~~~~~~~~~-----------~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~ 164 (447)
.+... .+=++.+...| ++++.... ..++..+ .+...+.......... +...+...+.-+.+
T Consensus 151 ~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar 227 (618)
T 1qsa_A 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLA---NNPNTVLTFARTTGATDFTRQMAAVAFASVAR 227 (618)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHH---HCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHH---hChHhHHHHHhccCCChhhHHHHHHHHHHHHh
Confidence 33221 11111222111 11221111 1111111 1222222222222111 11111222333333
Q ss_pred cCCHHHHHHHHHhhhhcCCCCcHhhHH----HHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCCh
Q 048090 165 AKLWAGGLELVRLMPALGLDYDHFTLS----ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240 (447)
Q Consensus 165 ~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (447)
.+.+.|...+....+.. ..+..... .+.......+...++...+...... ..+.....-.+....+.|++
T Consensus 228 -~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 228 -QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR----SQSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp -HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT----CCCHHHHHHHHHHHHHHTCH
T ss_pred -cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc----CCChHHHHHHHHHHHHCCCH
Confidence 37788888888776543 22322222 2222333444345566666654432 23333333444445567889
Q ss_pred HHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048090 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320 (447)
Q Consensus 241 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 320 (447)
+.|...|+.+... ........--+..++...|+.++|..+|+.+... . +|..++.+ .+.|..-..
T Consensus 302 ~~a~~~~~~l~~~----~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lAa-~~Lg~~~~~---- 366 (618)
T 1qsa_A 302 RGLNTWLARLPME----AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVAA-QRIGEEYEL---- 366 (618)
T ss_dssp HHHHHHHHHSCTT----GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHHH-HHTTCCCCC----
T ss_pred HHHHHHHHHcccc----ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHHH-HHcCCCCCC----
Confidence 9998888865432 1112232334556777788888888888888642 1 33333321 222221000
Q ss_pred HHHHHhcCCCCC-hh-----hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHH
Q 048090 321 EWMVHDYKLEPG-PE-----HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQK 394 (447)
Q Consensus 321 ~~~~~~~~~~~~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 394 (447)
......+. .. .-..-+..+...|....|...+..+.... + ..-...+.......|.++.+.....+
T Consensus 367 ----~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~--~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 367 ----KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--S--KTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp ----CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C--HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--C--HHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 00000110 00 11223455778899999999888877642 2 22234555556677777777655543
Q ss_pred HhhhCCC---chhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCc
Q 048090 395 ALELDPH---NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVG 439 (447)
Q Consensus 395 ~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 439 (447)
....+.. -+..|...+..+.+.-.++.++-.---..++++.|+..
T Consensus 439 ~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~a~ 486 (618)
T 1qsa_A 439 GKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPKVK 486 (618)
T ss_dssp TTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTTCB
T ss_pred HHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCc
Confidence 3222200 01234555555555555554433222334567777653
No 262
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=88.92 E-value=7.3 Score=30.73 Aligned_cols=165 Identities=12% Similarity=-0.005 Sum_probs=91.5
Q ss_pred HHHhhccCCCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCC
Q 048090 39 LTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118 (447)
Q Consensus 39 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 118 (447)
...+...+..+++..-...+..+.+.|.. .+...+..+... ++...-...+.++...++.+. ...+..+.. .
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---~ 92 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKALKD---EDAWVRRAAADALGQIGDERA-VEPLIKALK---D 92 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---C
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---C
Confidence 33444445566766666677777777663 344444444442 355555555556665555333 333333332 4
Q ss_pred CchhhHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHh
Q 048090 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA 198 (447)
Q Consensus 119 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 198 (447)
++..+-...+.++.+.++.+....+.+.+..++...-...+.++.+.++.+ +...+..+.+ .++...-...+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALG 168 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 566666667777777777655555555566667666666677776666543 3344444443 355555555566665
Q ss_pred cCCcHHHHHHHHHHHHHh
Q 048090 199 GLSAAEFGRQVHAYMIRK 216 (447)
Q Consensus 199 ~~~~~~~a~~~~~~~~~~ 216 (447)
+.+. ..+...+..+.+.
T Consensus 169 ~~~~-~~~~~~L~~~l~d 185 (211)
T 3ltm_A 169 EIGG-ERVRAAMEKLAET 185 (211)
T ss_dssp HHCS-HHHHHHHHHHHHH
T ss_pred HhCc-hhHHHHHHHHHhC
Confidence 5554 3444445555443
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.29 E-value=5.7 Score=28.66 Aligned_cols=63 Identities=16% Similarity=0.054 Sum_probs=48.7
Q ss_pred CHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHH
Q 048090 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232 (447)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (447)
|.=+..+-++.+...++.|++......+++|.+.+++..|.++++-+..+ ..+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K---~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK---AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---cCCchhhHHHHHH
Confidence 44456666777777788899999999999999999999999999988776 3444556666554
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.06 E-value=5.9 Score=28.59 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048090 277 YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341 (447)
Q Consensus 277 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 341 (447)
+.-+..+-++.+....+.|++......+++|.+.+++..|..+|+-++.+ +.+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 34456667777777788999999999999999999999999999988765 3444556777664
No 265
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.94 E-value=12 Score=31.90 Aligned_cols=170 Identities=14% Similarity=0.096 Sum_probs=96.1
Q ss_pred HHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHH----HHhhhhcCCCCcHhhHHHHHHHHhc
Q 048090 124 GSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL----VRLMPALGLDYDHFTLSALLRACAG 199 (447)
Q Consensus 124 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~~~ 199 (447)
|.++..=|.+.+++++|++++.. -...+.+.|+...|-.+ ++...+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44455557777888888766543 23345556766655543 4555566778888877777777655
Q ss_pred CCcHH-HHHHHHHHHHHh----hhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHh
Q 048090 200 LSAAE-FGRQVHAYMIRK----CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274 (447)
Q Consensus 200 ~~~~~-~a~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 274 (447)
...-+ .-.++++.+++. +....-++.....+...|.+.|++.+|+..|-. +...+...+..++--+..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-------~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML-------GTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-------SCHHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-------CCCccHHHHHHHHHHHHH
Confidence 32111 123344444432 111223677888999999999999999988851 111134455444443333
Q ss_pred c---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 048090 275 N---GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326 (447)
Q Consensus 275 ~---g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 326 (447)
. |...++ +...-..++ -|...++...|...|+...+.
T Consensus 178 ~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 178 QVDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred hcCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 3 332221 111122222 344568888888888876543
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=87.49 E-value=4 Score=31.92 Aligned_cols=53 Identities=11% Similarity=0.166 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhC
Q 048090 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399 (447)
Q Consensus 347 g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 399 (447)
+...++.++|..|...|+...-...|......+...|++.+|..+|+..++.+
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 33556667777776666666666666666777777777777777777766655
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.00 E-value=6.2 Score=32.53 Aligned_cols=52 Identities=12% Similarity=0.084 Sum_probs=27.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 048090 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324 (447)
Q Consensus 272 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 324 (447)
..+.|.+++++.....-++.. +-|...-..++..+|-.|+++.|.+-++...
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 345555555555555555442 2244444555555556666666665555554
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=84.63 E-value=6.4 Score=30.80 Aligned_cols=55 Identities=16% Similarity=0.088 Sum_probs=47.1
Q ss_pred CCccHHHHHHHHHhhhC--CCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048090 383 GKFELGKLAAQKALELD--PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437 (447)
Q Consensus 383 g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 437 (447)
+....+..+|..+...+ ..-+..|...+..+...|++++|.++|+.-++.+-.|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 33668999999888765 66788999999999999999999999999998887773
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.85 E-value=14 Score=33.24 Aligned_cols=101 Identities=11% Similarity=-0.079 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHH--
Q 048090 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN---GTKPDEVA-- 299 (447)
Q Consensus 225 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~-- 299 (447)
.+...+...|.+.|+++.|.+.|.++.... .+...-...+-..+..+...+++..+...+.+.... +..|+...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~-~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKA-ISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHH-TCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 356677777888888888888887665432 122333455666677777777777777777776432 22222221
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHh
Q 048090 300 FVTVISACSHTGQVKLGIEYFEWMVHD 326 (447)
Q Consensus 300 ~~~ll~~~~~~~~~~~a~~~~~~~~~~ 326 (447)
...-...+...+++..|...|-+....
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 111122233556677776666666554
No 270
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=83.72 E-value=14 Score=28.80 Aligned_cols=162 Identities=12% Similarity=-0.020 Sum_probs=80.5
Q ss_pred HhhccCCCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCc
Q 048090 41 NCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120 (447)
Q Consensus 41 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 120 (447)
.+++.+..+|+......+.++.+.+..+ +...+..+.. .++...-...+.++...++.+. ...+..+.. .++
T Consensus 18 ~~i~~L~~~~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~ 89 (201)
T 3ltj_A 18 MYIKNLQDDSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERA-VEPLIKALK---DED 89 (201)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSS
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCChh-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCC
Confidence 3444445556555555666666655533 3333333333 2344444444455555554332 233333332 355
Q ss_pred hhhHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcC
Q 048090 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200 (447)
Q Consensus 121 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 200 (447)
..+-...+.++.+.++.+....+.+.+..++...-...+.++.+.++.+ +...+..+.+ .++...-...+.++.+.
T Consensus 90 ~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 90 GWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHh
Confidence 5666666666776666555555555555666666566666666665533 3333333333 24555555555555555
Q ss_pred CcHHHHHHHHHHHHH
Q 048090 201 SAAEFGRQVHAYMIR 215 (447)
Q Consensus 201 ~~~~~a~~~~~~~~~ 215 (447)
+. ..+...+..+..
T Consensus 166 ~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 166 GG-ERVRAAMEKLAE 179 (201)
T ss_dssp CS-HHHHHHHHHHHH
T ss_pred Cc-hhHHHHHHHHHh
Confidence 44 334444444444
No 271
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=83.02 E-value=7.5 Score=28.88 Aligned_cols=50 Identities=12% Similarity=0.222 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhC
Q 048090 350 DKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399 (447)
Q Consensus 350 ~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 399 (447)
+++.++|..|...|+.......|......+...|++.+|..+|+..++.+
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34778888888888877777778888888888888888888888888765
No 272
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=82.67 E-value=26 Score=31.31 Aligned_cols=203 Identities=8% Similarity=-0.007 Sum_probs=93.4
Q ss_pred hhhhhhhcccccCCcchHHHhhccCCCCCC---ccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchh--hHHHHHHHh
Q 048090 22 RLMLPYTTCRHKKNLGTLTNCLKFLNPRNP---LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTY--ALCSSLTAS 96 (447)
Q Consensus 22 ~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~ 96 (447)
+.+..-++.| +++....+++.-..++. ...+ .+...++.|+.+-+. .+.+.|..++.. .-.+.+...
T Consensus 16 t~L~~Aa~~g---~~~~v~~Ll~~g~~~~~~~~~~~t-~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A 87 (437)
T 1n11_A 16 TPLHVASFMG---HLPIVKNLLQRGASPNVSNVKVET-PLHMAARAGHTEVAK----YLLQNKAKVNAKAKDDQTPLHCA 87 (437)
T ss_dssp CHHHHHHHHT---CHHHHHHHHHTTCCSCCSSSCCCC-HHHHHHHHTCHHHHH----HHHHHTCCSSCCCTTSCCHHHHH
T ss_pred CHHHHHHHCC---CHHHHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHHHH----HHHhCCCCCCCCCCCCCCHHHHH
Confidence 3444445556 47666667665433332 2233 344445667655444 344444443321 112234444
Q ss_pred ccCCchhHHHHHHHHHHHcCCCCchhh--HHHHHHHHHccCChhhHHHHhccCCCC---chhhHHHHHHHHHhcCCHHHH
Q 048090 97 TSVKDARFGKQVQAHVTKSGWLSSVFV--GSALIDLYAKLLLIHDAELMFDEIPVK---NSVCANALLSGYCEAKLWAGG 171 (447)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 171 (447)
+..|+.+ +.+.+++.|..++... -.+.+...+..|+.+.+..+++.-... +...++. +...+..|+.+-+
T Consensus 88 ~~~g~~~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v 162 (437)
T 1n11_A 88 ARIGHTN----MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTP-LHVAAKYGKVRVA 162 (437)
T ss_dssp HHHTCHH----HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHHHH
T ss_pred HHCCCHH----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCH-HHHHHHcCCHHHH
Confidence 4556654 4444455565443221 122345556678888777777664322 2222223 3334556776654
Q ss_pred HHHHHhhhhcCCCCcH---hhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChh--HHHHHHHHHHhcCChHHHHHH
Q 048090 172 LELVRLMPALGLDYDH---FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF--MQSSLIEMYGKCGLVTKALQV 246 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~ 246 (447)
..+++ .|..++. ...+.+ ...+..|+.+- ++.+.+. +..++.. .-...+...+..|+.+-+..+
T Consensus 163 ~~Ll~----~g~~~~~~~~~g~t~L-~~A~~~~~~~~----v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 231 (437)
T 1n11_A 163 ELLLE----RDAHPNAAGKNGLTPL-HVAVHHNNLDI----VKLLLPR--GGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231 (437)
T ss_dssp HHHHH----TTCCTTCCCSSCCCHH-HHHHHTTCHHH----HHHHGGG--TCCSCCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHh----CCCCCCCCCCCCCCHH-HHHHHcCCHHH----HHHHHhC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 44443 3333322 112222 23334555543 3334444 2222221 112234445567777766666
Q ss_pred HH
Q 048090 247 FN 248 (447)
Q Consensus 247 ~~ 248 (447)
++
T Consensus 232 l~ 233 (437)
T 1n11_A 232 LQ 233 (437)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 273
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.36 E-value=28 Score=30.77 Aligned_cols=295 Identities=9% Similarity=-0.010 Sum_probs=148.9
Q ss_pred hhHHHHHHHHHccCChhhHHHHhccCCC--------CchhhHHHHHHHHHhc-CCHHHHHHHHHhhhhcCCCCcHhhHH-
Q 048090 122 FVGSALIDLYAKLLLIHDAELMFDEIPV--------KNSVCANALLSGYCEA-KLWAGGLELVRLMPALGLDYDHFTLS- 191 (447)
Q Consensus 122 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~- 191 (447)
.....|...|.+.|+.++..+++....+ .....-..++..+... +..+.-.++..+..+.. .-+..+|.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3456677888888888888888776652 1334455666666553 44455555655555432 12223442
Q ss_pred -----HHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccC-CCcch
Q 048090 192 -----ALLRACAGLSAAEFGRQVHAYMIRKCCNLGND---VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE-INKDV 262 (447)
Q Consensus 192 -----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 262 (447)
.++..|...|++.+|.+++..+.+.-...... ..++..-+..|...+++.++...+.......... .+|..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 45667777888888888888877763222111 1234555666777788888888887766554332 22222
Q ss_pred hhHH--HHHHHHH-hcCCHHHHHHHHHHHHhC-C-C-CCC---HHHHHHHHHHHhccCcHHHHHHHH-HHHHHhcCCCCC
Q 048090 263 VLWT--SMLGVYG-RNGYFKEVIKLYEAMLMN-G-T-KPD---EVAFVTVISACSHTGQVKLGIEYF-EWMVHDYKLEPG 332 (447)
Q Consensus 263 ~~~~--~l~~~~~-~~g~~~~a~~~~~~m~~~-~-~-~p~---~~~~~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~~~ 332 (447)
...- .-...+. ..+++..|...|-+..+. . . .|. ...|..+. +.....+.+ ...++ +.....+ ..|.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~-aLl~~~r~e-l~~~l~~~~~~~~-~~pe 255 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLC-KIMLGQSDD-VNQLVSGKLAITY-SGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HHHTTCGGG-HHHHHHSHHHHTT-CSHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-HHHcCCHHH-HHHHhcccccccc-CCcc
Confidence 2211 1122344 577777777766655322 1 1 111 11232222 222222222 22222 2222221 2344
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhh--hCCCchhHHHHHH
Q 048090 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE--LDPHNVGIYVMLS 410 (447)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~ 410 (447)
...+..++.+ ...+++.+...+++..... + ..|+.. ..-+..+. ..+..+.+. ..|-....+..++
T Consensus 256 i~~l~~L~~a-~~~~dl~~f~~iL~~~~~~-l-~~D~~l-~~h~~~L~--------~~Ir~~~L~~i~~pYsrIsl~~iA 323 (394)
T 3txn_A 256 IDAMKSVAEA-SHKRSLADFQAALKEYKKE-L-AEDVIV-QAHLGTLY--------DTMLEQNLCRIIEPYSRVQVAHVA 323 (394)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHHHHHHSTTT-T-TTSHHH-HHHHHHHH--------HHHHHHHHHHHHTTCSEEEHHHHH
T ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-H-hcChHH-HHHHHHHH--------HHHHHHHHHHHhHhhceeeHHHHH
Confidence 4445555544 3455666666666554322 2 223321 11111110 011111111 1344555566666
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC
Q 048090 411 NLYAKFCMWDEIGQLRELMKEKGL 434 (447)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~~~~ 434 (447)
..+ .. ..++++..+-+|+..|.
T Consensus 324 ~~l-~l-s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 324 ESI-QL-PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHH-TC-CHHHHHHHHHHHHHTTS
T ss_pred HHH-Cc-CHHHHHHHHHHHHHCCC
Confidence 554 33 67889999999988764
No 274
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=81.13 E-value=22 Score=29.28 Aligned_cols=113 Identities=6% Similarity=-0.054 Sum_probs=51.0
Q ss_pred hhhhhcccccCCcchHHHhhccCCCCCC----ccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhh--HHHHHHHhc
Q 048090 24 MLPYTTCRHKKNLGTLTNCLKFLNPRNP----LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYA--LCSSLTAST 97 (447)
Q Consensus 24 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~ 97 (447)
+...++.| +++....+++.-...+. .-++ .+...+..|+.+ +++.+.+.|..|+... -.+.+...+
T Consensus 9 L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~~g~t-~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 9 LIKAVQNE---DVDLVQQLLEGGANVNFQEEEGGWT-PLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHTT---CHHHHHHHHHTTCCTTCCCTTTCCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred HHHHHHcC---CHHHHHHHHHcCCCcccccCCCCCc-HHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 33344455 46666666665433221 1223 344445566653 4444555555443211 112233333
Q ss_pred cCCchhHHHHHHHHHHHcCCCCchhh--HHHHHHHHHccCChhhHHHHhccCC
Q 048090 98 SVKDARFGKQVQAHVTKSGWLSSVFV--GSALIDLYAKLLLIHDAELMFDEIP 148 (447)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~ 148 (447)
..|+.+ +++.+++.|..++... -...+...+..|+.+-...+++.-.
T Consensus 81 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 129 (285)
T 1wdy_A 81 IAGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129 (285)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HcCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCC
Confidence 445543 4444555554443221 1123344455667666666665543
No 275
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.74 E-value=12 Score=25.35 Aligned_cols=89 Identities=12% Similarity=0.052 Sum_probs=59.8
Q ss_pred CCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHH
Q 048090 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279 (447)
Q Consensus 200 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 279 (447)
....++|..+-+.+... +. ...+-..-+..+...|++++|..+.+ .. ..||...|.++.. .+.|..+
T Consensus 19 ~H~HqEA~tIAdwL~~~--~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~---~~----c~pdlepw~ALce--~rlGl~s 85 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERL--GQ--DEAARLIRISSLANQGRYQEALAFAH---GN----PWPALEPWFALCE--WHLGLGA 85 (115)
T ss_dssp TTCHHHHHHHHHHHHHT--TC--HHHHHHHHHHHHHHTTCHHHHHGGGT---TC----CCGGGHHHHHHHH--HHTTCHH
T ss_pred chHHHHHHHHHHHHHhC--Cc--HHHHHHHHHHHHHcchhHHHHHHhcC---CC----CCchHHHHHHHHH--HhcccHH
Confidence 34567777777777665 21 22223333456778899999988776 22 6788888877654 5788888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHH
Q 048090 280 EVIKLYEAMLMNGTKPDEVAFVT 302 (447)
Q Consensus 280 ~a~~~~~~m~~~~~~p~~~~~~~ 302 (447)
++...+.++..+| .|....|..
T Consensus 86 ~le~rL~~la~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 86 ALDRRLAGLGGSS-DPALADFAA 107 (115)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CHHHHHHHH
Confidence 8888888888776 555555543
No 276
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.07 E-value=12 Score=25.27 Aligned_cols=89 Identities=17% Similarity=0.089 Sum_probs=59.4
Q ss_pred CCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHH
Q 048090 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279 (447)
Q Consensus 200 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 279 (447)
....++|..+-+.+... +. ...+-..-+..+...|++++|..+.+ .. ..||...|.++.. .+.|..+
T Consensus 20 ~H~HqEA~tIAdwL~~~--~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~---~~----c~pdlepw~ALce--~rlGl~s 86 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLK--GE--EEAVQLIRLSSLMNRGDYASALQQGN---KL----AYPDLEPWLALCE--YRLGLGS 86 (116)
T ss_dssp TTCHHHHHHHHHHHHHT--TC--HHHHHHHHHHHHHHTTCHHHHHHHHT---TS----CCGGGHHHHHHHH--HHHTCHH
T ss_pred chHHHHHHHHHHHHHhC--Cc--HHHHHHHHHHHHHcchhHHHHHHhcC---CC----CCchHHHHHHHHH--HhcccHH
Confidence 34567777777777665 21 22223333456778899999998887 32 6788888877655 4778888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHH
Q 048090 280 EVIKLYEAMLMNGTKPDEVAFVT 302 (447)
Q Consensus 280 ~a~~~~~~m~~~~~~p~~~~~~~ 302 (447)
++...+.++..+| .|....|..
T Consensus 87 ~le~rL~~la~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 87 ALESRLNRLARSQ-DPRIQTFVN 108 (116)
T ss_dssp HHHHHHHHHTTCC-CHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CHHHHHHHH
Confidence 8888887887766 555555543
No 277
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=78.31 E-value=13 Score=29.72 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhC
Q 048090 350 DKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399 (447)
Q Consensus 350 ~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 399 (447)
+.+.++|..|...|+.......|......+...|++.+|..+|+..++.+
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 57778999999999888888889999999999999999999999999876
No 278
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=77.25 E-value=29 Score=30.02 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=13.4
Q ss_pred HHHHHHHccCChhhHHHHhccCCCC
Q 048090 126 ALIDLYAKLLLIHDAELMFDEIPVK 150 (447)
Q Consensus 126 ~l~~~~~~~g~~~~a~~~~~~~~~~ 150 (447)
.++.-|...|+.++|.+.++++..|
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 3445555555555555555555544
No 279
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=76.81 E-value=40 Score=29.84 Aligned_cols=299 Identities=10% Similarity=-0.052 Sum_probs=157.0
Q ss_pred hhhHHHHHHHhccCCchhHHHHHHHHHHHcC-CCC---chhhHHHHHHHHHccCC-hhhHHHHhccCCC---CchhhH--
Q 048090 86 TYALCSSLTASTSVKDARFGKQVQAHVTKSG-WLS---SVFVGSALIDLYAKLLL-IHDAELMFDEIPV---KNSVCA-- 155 (447)
Q Consensus 86 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~---~~~~~~-- 155 (447)
......+...+.+.|+.++..+++......- .-| .......+++.+....+ .+.-.++..+..+ ....+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888899999998888887664321 111 23345667777765432 3333333333221 111222
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcH-----hhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhH
Q 048090 156 ----NALLSGYCEAKLWAGGLELVRLMPALGLDYDH-----FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226 (447)
Q Consensus 156 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 226 (447)
..++..|...|++.+|.+++.++.+.=-..|. ..|..-+..|...+++.++...+.........+.+++.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 25778899999999999988888663112221 235555667788899999999999887764333344433
Q ss_pred HH----HHHHHHH-hcCChHHHHHHHHhhhhhcccCCCcch-h-hHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCCHH
Q 048090 227 QS----SLIEMYG-KCGLVTKALQVFNLAGHRLEGEINKDV-V-LWTSMLGVYGRNGYFKEVIKLYE-AMLMNGTKPDEV 298 (447)
Q Consensus 227 ~~----~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~-~-~~~~l~~~~~~~g~~~~a~~~~~-~m~~~~~~p~~~ 298 (447)
.. .-...+. ..+++..|...|-+...-...-..|.. . ..-.++.+... ++..+.-.++. .....-..|...
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~-~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML-GQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT-TCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHc-CCHHHHHHHhccccccccCCccHH
Confidence 32 2233456 789999999888755332221111111 1 11112222222 33223222221 211111356666
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHH
Q 048090 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378 (447)
Q Consensus 299 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~ 378 (447)
.+..++.++ ..+++.....+++.... .+..|......+-..+.+ --...+.++. .|-....+..+...
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~--~l~~D~~l~~h~~~L~~~-----Ir~~~L~~i~----~pYsrIsl~~iA~~ 325 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKK--ELAEDVIVQAHLGTLYDT-----MLEQNLCRII----EPYSRVQVAHVAES 325 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTT--TTTTSHHHHHHHHHHHHH-----HHHHHHHHHH----TTCSEEEHHHHHHH
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHH--HHhcChHHHHHHHHHHHH-----HHHHHHHHHh----HhhceeeHHHHHHH
Confidence 666677664 45677666666665532 234454322111111100 0011122222 24344446666666
Q ss_pred HHhcCCccHHHHHHHHHhhhC
Q 048090 379 CHDCGKFELGKLAAQKALELD 399 (447)
Q Consensus 379 ~~~~g~~~~a~~~~~~~~~~~ 399 (447)
+.- ..++++..+-+++..+
T Consensus 326 l~l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 326 IQL--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp HTC--CHHHHHHHHHHHHHTT
T ss_pred HCc--CHHHHHHHHHHHHHCC
Confidence 543 5677777777777654
No 280
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.75 E-value=38 Score=29.09 Aligned_cols=162 Identities=9% Similarity=0.027 Sum_probs=81.0
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHH----HHHHHHHcCCCCchhhHHHHHH
Q 048090 54 FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQ----VQAHVTKSGWLSSVFVGSALID 129 (447)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~~ 129 (447)
|.++..-|.+.+++++|++++..--. .+.+.|+...|-+ +++-..+.++++|......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45556666667777777766543211 1222333333222 2344444556666665555655
Q ss_pred HHHccCChh--------hHHHHhc---cCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHh
Q 048090 130 LYAKLLLIH--------DAELMFD---EIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA 198 (447)
Q Consensus 130 ~~~~~g~~~--------~a~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 198 (447)
.+.....-+ +|+..=. ..+.-|+.....+...|.+.+++.+|...|- . |-.+....|..++..+.
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHH
Confidence 555444321 1111111 1123366777778888888888888877763 2 22344456655554443
Q ss_pred cCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhh
Q 048090 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAG 251 (447)
Q Consensus 199 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 251 (447)
..+... +++..+-.++ -.|...+++..|..+|+...
T Consensus 179 ~~~~~~----------------e~dlfiaRaV-L~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 179 KQDESH----------------TAPLYCARAV-LPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HTSCGG----------------GHHHHHHHHH-HHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCc----------------cHHHHHHHHH-HHHHHhCCHHHHHHHHHHHH
Confidence 332211 1122222222 23455667777777665443
No 281
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=74.91 E-value=42 Score=29.19 Aligned_cols=69 Identities=14% Similarity=0.191 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHH
Q 048090 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY--FKEVIKLYEAMLMNGTKPDEVA 299 (447)
Q Consensus 227 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~ 299 (447)
...++.-|...|+.++|.+.++++..- .-....+...+..++-+.++ .+.+.+++..+...|+-+....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p----~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVP----HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCT----TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCC----cchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 456777788889999999999865321 11122334445555554433 3557778888887776554433
No 282
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=74.75 E-value=25 Score=26.51 Aligned_cols=50 Identities=10% Similarity=0.179 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhC
Q 048090 350 DKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399 (447)
Q Consensus 350 ~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 399 (447)
+.+.++|..|...++...-...|......+...|++.+|..+|+..++.+
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 33667788888888777777777888888888888888888888888766
No 283
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=71.28 E-value=26 Score=25.17 Aligned_cols=61 Identities=16% Similarity=0.080 Sum_probs=39.2
Q ss_pred HHHHHHHHccCChhhHHHHhccCCCCc---hhhHHHHHHHHHhcCC--HHHHHHHHHhhhhcCCCC
Q 048090 125 SALIDLYAKLLLIHDAELMFDEIPVKN---SVCANALLSGYCEAKL--WAGGLELVRLMPALGLDY 185 (447)
Q Consensus 125 ~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~ 185 (447)
..++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+.+.|+-+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 557777888888899988888887662 2333444444444432 356677777777666443
No 284
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=69.87 E-value=40 Score=26.88 Aligned_cols=52 Identities=8% Similarity=-0.009 Sum_probs=44.7
Q ss_pred ccHHHHHHHHHhhhC--CCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 048090 385 FELGKLAAQKALELD--PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436 (447)
Q Consensus 385 ~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 436 (447)
.+.+..+|..+...+ ..-..+|...+..+...|++++|.++|+.-++.+-.|
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 357888999888755 6678899999999999999999999999988887776
No 285
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=68.61 E-value=20 Score=29.03 Aligned_cols=23 Identities=13% Similarity=-0.211 Sum_probs=18.5
Q ss_pred HHHHHHhCCChhhHHHHHHHHHh
Q 048090 57 VISDFCRNGSPLYALKTFSFMHV 79 (447)
Q Consensus 57 l~~~~~~~~~~~~a~~~~~~m~~ 79 (447)
-++.+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 46778888899999998888754
No 286
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=67.93 E-value=48 Score=29.56 Aligned_cols=339 Identities=9% Similarity=0.047 Sum_probs=159.9
Q ss_pred HHHHHhCCChhhHHHHHHHHHhcCCCCchhh--HHHHHHHhccCCchhHHHHHHHHHHHcCCCCchh--hHHHHHHHHHc
Q 048090 58 ISDFCRNGSPLYALKTFSFMHVHGIFLDTYA--LCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVF--VGSALIDLYAK 133 (447)
Q Consensus 58 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 133 (447)
+...+..|+.+- ++.+.+.|..|+... ..+.+...+..|+.+-+.. +++.|..++.. .-.+.+...+.
T Consensus 18 L~~Aa~~g~~~~----v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~ 89 (437)
T 1n11_A 18 LHVASFMGHLPI----VKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKY----LLQNKAKVNAKAKDDQTPLHCAAR 89 (437)
T ss_dssp HHHHHHHTCHHH----HHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHH----HHHHTCCSSCCCTTSCCHHHHHHH
T ss_pred HHHHHHCCCHHH----HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHhCCCCCCCCCCCCCCHHHHHHH
Confidence 444456677654 444455666655332 2234455556677664444 44455444322 11234556667
Q ss_pred cCChhhHHHHhccCCCC---chhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHH
Q 048090 134 LLLIHDAELMFDEIPVK---NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210 (447)
Q Consensus 134 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 210 (447)
.|+.+-+..+++.-..+ +....+.+ ...+..|+.+-+..+++.-.... ..+....+.+ ...+..|+.+-+.
T Consensus 90 ~g~~~~v~~Ll~~ga~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L-~~A~~~g~~~~v~--- 163 (437)
T 1n11_A 90 IGHTNMVKLLLENNANPNLATTAGHTPL-HIAAREGHVETVLALLEKEASQA-CMTKKGFTPL-HVAAKYGKVRVAE--- 163 (437)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTCCCHH-HHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHH-HHHHHTTCHHHHH---
T ss_pred CCCHHHHHHHHhCCCCCCCCCCCCCcHH-HHHHHcCCHHHHHHHHhCCCCCc-CCCCCCCCHH-HHHHHcCCHHHHH---
Confidence 88888888787764433 22223333 34456788877766665432211 1122222233 3334556665444
Q ss_pred HHHHHhhhcCCCChh--HHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcc---hhhHHHHHHHHHhcCCHHHHHHHH
Q 048090 211 AYMIRKCCNLGNDVF--MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD---VVLWTSMLGVYGRNGYFKEVIKLY 285 (447)
Q Consensus 211 ~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~ 285 (447)
.+.+. +..++.. .-...+...+..|+.+-+.-+++. +..++ ...++. +...+..|+.+-+
T Consensus 164 -~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~~~~~~~~~g~t~-L~~A~~~~~~~~~---- 228 (437)
T 1n11_A 164 -LLLER--DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR-------GGSPHSPAWNGYTP-LHIAAKQNQVEVA---- 228 (437)
T ss_dssp -HHHHT--TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGG-------TCCSCCCCTTCCCH-HHHHHHTTCHHHH----
T ss_pred -HHHhC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-------CCCCCCcCCCCCCH-HHHHHHcCCHHHH----
Confidence 44444 3333321 112234445667777655544431 22222 222222 3344566775544
Q ss_pred HHHHhCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHHcCCHHHHHHHHHHH
Q 048090 286 EAMLMNGTKPDE---VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP---EHYSCLVDLLCRAGELDKAWKLINEM 359 (447)
Q Consensus 286 ~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~ 359 (447)
+.+.+.|..++. ...+.+. ..+..|..+-+..+ .+. +..++. ...+. +...++.|+.+-+..+++.-
T Consensus 229 ~~Ll~~g~~~~~~~~~g~t~L~-~A~~~g~~~~v~~L----l~~-~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~g 301 (437)
T 1n11_A 229 RSLLQYGGSANAESVQGVTPLH-LAAQEGHAEMVALL----LSK-QANGNLGNKSGLTP-LHLVAQEGHVPVADVLIKHG 301 (437)
T ss_dssp HHHHHTTCCTTCCCTTCCCHHH-HHHHTTCHHHHHHH----HTT-TCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCCCCCCCHHH-HHHHCCCHHHHHHH----Hhc-CCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhCC
Confidence 444455544432 2222333 33455665544433 333 444332 22223 33445677777666555542
Q ss_pred HhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCc
Q 048090 360 LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVG 439 (447)
Q Consensus 360 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 439 (447)
...+ ..+..-... +...+..|+.+-+..+++.....+..+..-...|-. ..+.|+. ++++.+.+.|..|+..
T Consensus 302 ~~~~--~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~-A~~~g~~----~iv~~Ll~~ga~~~~~ 373 (437)
T 1n11_A 302 VMVD--ATTRMGYTP-LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQ-AAQQGHT----DIVTLLLKNGASPNEV 373 (437)
T ss_dssp CCTT--CCCSSCCCH-HHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTTCH----HHHHHHHHTTCCSCCC
T ss_pred ccCC--CCCCCCCCH-HHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHH-HHHCChH----HHHHHHHHCcCCCCCC
Confidence 2221 111111223 333456777776666655433333223222233332 3355664 4556667788888764
Q ss_pred c
Q 048090 440 C 440 (447)
Q Consensus 440 ~ 440 (447)
.
T Consensus 374 ~ 374 (437)
T 1n11_A 374 S 374 (437)
T ss_dssp C
T ss_pred C
Confidence 3
No 287
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=66.64 E-value=33 Score=25.48 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCH
Q 048090 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY--FKEVIKLYEAMLMNGTKPDE 297 (447)
Q Consensus 227 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~p~~ 297 (447)
...++.-|...|+.++|.+.++++..- .-....+...+..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p----~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVP----HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCG----GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCC----cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 456778888889999999999865310 11112233444445554322 45567777777776655443
No 288
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=66.47 E-value=39 Score=25.43 Aligned_cols=52 Identities=4% Similarity=-0.138 Sum_probs=44.7
Q ss_pred cHHHHHHHHHhhhC--CCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048090 386 ELGKLAAQKALELD--PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437 (447)
Q Consensus 386 ~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 437 (447)
+.+..+|+.+...+ ..-+.+|...+..+...|++.+|.++|+.-++.+-.|-
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 44778888887755 66788999999999999999999999999999887774
No 289
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=65.52 E-value=22 Score=26.48 Aligned_cols=62 Identities=16% Similarity=0.055 Sum_probs=39.4
Q ss_pred HHHHHHHHHccCChhhHHHHhccCCCCc---hhhHHHHHHHHHhcCC--HHHHHHHHHhhhhcCCCC
Q 048090 124 GSALIDLYAKLLLIHDAELMFDEIPVKN---SVCANALLSGYCEAKL--WAGGLELVRLMPALGLDY 185 (447)
Q Consensus 124 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~ 185 (447)
...++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+.+.|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3557777888889999998888887662 2334444444444322 455667777777666443
No 290
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=64.87 E-value=38 Score=27.44 Aligned_cols=89 Identities=17% Similarity=0.042 Sum_probs=48.3
Q ss_pred HHHHhCCChhhHHHHHHHHHhcCCCCchhh-------HHHHHHHh--ccCCchhHHHHHHHHHHHcC---------CC-C
Q 048090 59 SDFCRNGSPLYALKTFSFMHVHGIFLDTYA-------LCSSLTAS--TSVKDARFGKQVQAHVTKSG---------WL-S 119 (447)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-------~~~ll~~~--~~~~~~~~a~~~~~~~~~~~---------~~-~ 119 (447)
...++.|+.+....+++.+.+.|..++... .+.+..+. ++.|+.+-+..+++.-...+ +. .
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 89 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV 89 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc
Confidence 344567888888888887777665555332 23333333 25677777776666544321 00 0
Q ss_pred chhhHHHHHHHHHccCChhhHHHHhccCC
Q 048090 120 SVFVGSALIDLYAKLLLIHDAELMFDEIP 148 (447)
Q Consensus 120 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 148 (447)
|..- .+.+...+..|+.+-+..+++.-.
T Consensus 90 d~~g-~t~L~~A~~~g~~~~v~~Ll~~ga 117 (260)
T 3jxi_A 90 YYRG-QTALHIAIERRCKHYVELLVEKGA 117 (260)
T ss_dssp SEES-BCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred ccCC-CCHHHHHHHcCCHHHHHHHHhCCC
Confidence 0011 123444456677777777766543
No 291
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=64.53 E-value=66 Score=27.33 Aligned_cols=168 Identities=10% Similarity=-0.010 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHH----HHHHHHhCCCCCCHHHHH
Q 048090 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK----LYEAMLMNGTKPDEVAFV 301 (447)
Q Consensus 226 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~----~~~~m~~~~~~p~~~~~~ 301 (447)
.|.++..=|.+.+++++|.+++..- ...+.+.|+...|-+ +.+...+.+..++.....
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g------------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~ 96 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG------------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVA 96 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH------------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 4445555577778888888776521 223445566555544 345555567778877777
Q ss_pred HHHHHHhccCcHH-HHHHHHHHHHH---hcCC--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHH
Q 048090 302 TVISACSHTGQVK-LGIEYFEWMVH---DYKL--EPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375 (447)
Q Consensus 302 ~ll~~~~~~~~~~-~a~~~~~~~~~---~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l 375 (447)
.++..+..-..-+ .-.++++++.+ +.|- .-++.....+...|.+.|++.+|...|-.-. .++...+..+
T Consensus 97 rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-----~~s~~~~a~~ 171 (312)
T 2wpv_A 97 RLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-----HDSMIKYVDL 171 (312)
T ss_dssp HHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-----HHHHHHHHHH
T ss_pred HHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CccHHHHHHH
Confidence 7776665422111 11222233321 1122 2357778888889999999999888764111 1134445555
Q ss_pred HHHHHhc---CCccHHHHHHHHHhhhCCCchhH-HHHHHHHHHhcCChHHHHHHHHHHHH
Q 048090 376 LSACHDC---GKFELGKLAAQKALELDPHNVGI-YVMLSNLYAKFCMWDEIGQLRELMKE 431 (447)
Q Consensus 376 ~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~ 431 (447)
+.-+... |...+ ... ....+--|.-.|+...|..+++...+
T Consensus 172 l~~w~~~~~~~~~~e---------------~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 172 LWDWLCQVDDIEDST---------------VAEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHTTCCCHHH---------------HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCcch---------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5544443 32222 222 22223356678888888888887653
No 292
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=64.14 E-value=11 Score=25.42 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=18.4
Q ss_pred cchHHHhhccCCCCCCccHHHHHHHHHhCCChh
Q 048090 36 LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPL 68 (447)
Q Consensus 36 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 68 (447)
.+.|.++++.++.+.+.+|..++.++...|+..
T Consensus 53 ~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 53 RDQARQLIIDLETRGSQALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHH
Confidence 455555666555555556666666555444433
No 293
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=63.74 E-value=38 Score=24.28 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCH
Q 048090 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY--FKEVIKLYEAMLMNGTKPDE 297 (447)
Q Consensus 227 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~p~~ 297 (447)
...++.-|...|+.++|.+.++++..- .-....+...+..++-+.+. .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p----~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVP----HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCG----GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC----ccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 456777888889999999999865310 11112233444455555432 35677788888777655443
No 294
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=63.13 E-value=44 Score=24.80 Aligned_cols=52 Identities=2% Similarity=-0.138 Sum_probs=45.1
Q ss_pred cHHHHHHHHHhhhC--CCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048090 386 ELGKLAAQKALELD--PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437 (447)
Q Consensus 386 ~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 437 (447)
+++..+|+.+...+ ..-+..|...+..+...|++++|.++|+.-++.+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 45889999888755 66788999999999999999999999999998887773
No 295
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=62.52 E-value=51 Score=25.38 Aligned_cols=48 Identities=13% Similarity=0.016 Sum_probs=20.8
Q ss_pred chhhHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCC
Q 048090 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167 (447)
Q Consensus 120 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (447)
+..+-...+..+.+.+..+....+.+.+..++...-...+.++...++
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 333333344444444443333344444444444444444444444444
No 296
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=61.46 E-value=56 Score=25.47 Aligned_cols=60 Identities=7% Similarity=0.032 Sum_probs=38.5
Q ss_pred HHHHHHHH---hcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcH-----HHHHHHHHHHHHh
Q 048090 156 NALLSGYC---EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA-----EFGRQVHAYMIRK 216 (447)
Q Consensus 156 ~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~ 216 (447)
-.+|+++. +-.+++.|+-.+-+|.+.| .|....-..++.+....|.. ..|...++.....
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~i 82 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKL 82 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Confidence 34455543 5588999999999999998 77766666666666555532 3444445544444
No 297
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=61.30 E-value=59 Score=25.73 Aligned_cols=85 Identities=13% Similarity=0.050 Sum_probs=41.1
Q ss_pred HHHHhCCChhhHHHHHHHHHhcCCCCchhh--HHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhh--HHHHHHHHHcc
Q 048090 59 SDFCRNGSPLYALKTFSFMHVHGIFLDTYA--LCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFV--GSALIDLYAKL 134 (447)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 134 (447)
...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+ +++.+++.|..++... -...+...+..
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 89 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEH 89 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence 334556777776666666655554443221 112233334455543 3444445554443221 11233444456
Q ss_pred CChhhHHHHhccC
Q 048090 135 LLIHDAELMFDEI 147 (447)
Q Consensus 135 g~~~~a~~~~~~~ 147 (447)
|+.+-+..+++..
T Consensus 90 ~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 90 RSPTCLRALLDSA 102 (241)
T ss_dssp TCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcC
Confidence 6666666666554
No 298
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=58.22 E-value=63 Score=25.08 Aligned_cols=42 Identities=10% Similarity=-0.049 Sum_probs=16.2
Q ss_pred HHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCC
Q 048090 126 ALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167 (447)
Q Consensus 126 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (447)
..+..+.+.|+.+....+.+.+..++...-...+.++...++
T Consensus 38 ~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 38 AAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp HHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 333344444433333333333333444433344444444443
No 299
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=57.33 E-value=73 Score=29.22 Aligned_cols=70 Identities=13% Similarity=0.040 Sum_probs=51.1
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhc
Q 048090 308 SHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382 (447)
Q Consensus 308 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 382 (447)
.....++.|..+|.++... .| +...|+.|.-.....|+.-+|.-.|-+.+... .+-..+...|...+.+.
T Consensus 163 RY~~~~~~A~~~Y~~A~~~---~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~--~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 163 RYRNQTSQAESYYRHAAQL---VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK--FPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS--BCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh---CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHH
Confidence 3445678899999988754 45 47889998888888888888887777766554 33666688887777653
No 300
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=56.54 E-value=91 Score=26.39 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=14.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhh
Q 048090 228 SSLIEMYGKCGLVTKALQVFNLA 250 (447)
Q Consensus 228 ~~l~~~~~~~g~~~~A~~~~~~~ 250 (447)
..++.-|...|+.++|...++++
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el 29 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDL 29 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34566666667777777776643
No 301
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=54.74 E-value=73 Score=24.75 Aligned_cols=45 Identities=16% Similarity=-0.000 Sum_probs=30.6
Q ss_pred HHHHHHH---hcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCC
Q 048090 157 ALLSGYC---EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLS 201 (447)
Q Consensus 157 ~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 201 (447)
.+|+++. +-.+++.|+-.+-+|++.|-.|....-..++.+....|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3455543 55789999999999999887676655555555554443
No 302
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=54.38 E-value=76 Score=25.52 Aligned_cols=88 Identities=8% Similarity=-0.006 Sum_probs=44.7
Q ss_pred HHHHHhCCChhhHHHHHHHHHhcCCCCch-------hhHHHHHHHhccC---CchhHHHHHHHHHHHcCCCC--------
Q 048090 58 ISDFCRNGSPLYALKTFSFMHVHGIFLDT-------YALCSSLTASTSV---KDARFGKQVQAHVTKSGWLS-------- 119 (447)
Q Consensus 58 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~-------- 119 (447)
+...++.|+.+....+++.+.+.|..++. .-.+.+..+ +.. |+.+-+..+++.-...+...
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 84 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCCcccchhhhcccccc
Confidence 33445667777777777766666654432 222333333 333 66666666665544432111
Q ss_pred --chhhHHHHHHHHHccCChhhHHHHhccC
Q 048090 120 --SVFVGSALIDLYAKLLLIHDAELMFDEI 147 (447)
Q Consensus 120 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 147 (447)
|..- .+.+...+..|+.+-+..+++.-
T Consensus 85 ~~d~~g-~t~L~~A~~~g~~~~v~~Ll~~g 113 (256)
T 2etb_A 85 DEFYQG-HSALHIAIEKRSLQCVKLLVENG 113 (256)
T ss_dssp STTTTT-CCHHHHHHHTTCHHHHHHHHHTT
T ss_pred cccccC-CCHHHHHHHcCCHHHHHHHHHcC
Confidence 1111 22334445567777666666653
No 303
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=52.85 E-value=74 Score=24.24 Aligned_cols=14 Identities=0% Similarity=0.005 Sum_probs=6.5
Q ss_pred ccCChhhHHHHhcc
Q 048090 133 KLLLIHDAELMFDE 146 (447)
Q Consensus 133 ~~g~~~~a~~~~~~ 146 (447)
..|+.+....++..
T Consensus 14 ~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 14 NQRDTKKVKEILQD 27 (201)
T ss_dssp HTTCHHHHHHHHTC
T ss_pred HhccHHHHHHHHHc
Confidence 34444444444443
No 304
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=52.24 E-value=35 Score=25.01 Aligned_cols=60 Identities=8% Similarity=-0.032 Sum_probs=28.5
Q ss_pred HHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCCh
Q 048090 77 MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLI 137 (447)
Q Consensus 77 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 137 (447)
+.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|.---++.+...|-+
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 444555544322 223333333444455666666665554444444444445555555543
No 305
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=51.85 E-value=89 Score=31.57 Aligned_cols=52 Identities=13% Similarity=0.122 Sum_probs=29.3
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048090 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360 (447)
Q Consensus 303 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 360 (447)
++..|...|.++-+.++... ++.++..--.+..+|...|++++|.+.|+++.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~------~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhh------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44555556666554443221 23333333345667778888888888887653
No 306
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=50.24 E-value=91 Score=24.52 Aligned_cols=64 Identities=14% Similarity=0.071 Sum_probs=41.2
Q ss_pred hhHHHHHHHHH---hcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCc-----HHHHHHHHHHHHHh
Q 048090 153 VCANALLSGYC---EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA-----AEFGRQVHAYMIRK 216 (447)
Q Consensus 153 ~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~ 216 (447)
..+-.+|+++. +-.+++.|+-.+-+|.+.|-.|....-..++.+.-..|. ...|...++.....
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~i 104 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRV 104 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Confidence 34444555554 558999999999999999877776666666666544443 33455555555555
No 307
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.32 E-value=40 Score=30.96 Aligned_cols=63 Identities=10% Similarity=0.136 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCCh------hhH-HHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048090 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP------EHY-SCLVDLLCRAGELDKAWKLINEMLDRG 363 (447)
Q Consensus 297 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~ 363 (447)
...++.+++.|...+.++.|..+..+.. ++.+. ..| -.+.+.+.-.+++.+|.+.+..+...-
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 4678888999999999999999988773 33221 122 233456677889999999998887764
No 308
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=49.23 E-value=26 Score=26.37 Aligned_cols=70 Identities=7% Similarity=0.008 Sum_probs=41.6
Q ss_pred hhHHHHHHH-HHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHc--CCCCchhhHHHHHHHHHccCChh
Q 048090 68 LYALKTFSF-MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKS--GWLSSVFVGSALIDLYAKLLLIH 138 (447)
Q Consensus 68 ~~a~~~~~~-m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 138 (447)
+.+++-+.+ +.+.|++++.. =..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 444444433 35567666543 344555666666677788888887776 54555555545567777777543
No 309
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=49.07 E-value=67 Score=25.33 Aligned_cols=51 Identities=18% Similarity=0.316 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhcCCCCC-hhhHH-----HHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048090 313 VKLGIEYFEWMVHDYKLEPG-PEHYS-----CLVDLLCRAGELDKAWKLINEMLDRG 363 (447)
Q Consensus 313 ~~~a~~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~ 363 (447)
++.|+.+|+.+.+...+... ..... ..+..|.+.|.+++|.+++++.....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~ 144 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKD 144 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 67889999998876332222 12222 22345778899999999998887763
No 310
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=47.18 E-value=33 Score=25.37 Aligned_cols=61 Identities=7% Similarity=0.006 Sum_probs=33.9
Q ss_pred HHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCCh
Q 048090 76 FMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLI 137 (447)
Q Consensus 76 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 137 (447)
.+.+.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|.--.++.+...|-+
T Consensus 17 ~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 4555666554332 234444444555667777777777665555555555556666666654
No 311
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=47.13 E-value=1.4e+02 Score=25.68 Aligned_cols=170 Identities=12% Similarity=0.010 Sum_probs=96.3
Q ss_pred hHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHH----HHhhhhcCCCCcHhhHHHHHHHHh
Q 048090 123 VGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL----VRLMPALGLDYDHFTLSALLRACA 198 (447)
Q Consensus 123 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~~ 198 (447)
+|.++..=|.+.+++++|++++.. -...+.+.|+...|-++ ++-+.+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345555667888888888877533 23345556666555444 355566778888888777777776
Q ss_pred cCCcHH-HHHHHHHHHHH----hhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHH
Q 048090 199 GLSAAE-FGRQVHAYMIR----KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273 (447)
Q Consensus 199 ~~~~~~-~a~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 273 (447)
....-+ .=.++.+.+++ .+....-++.....+...|.+.+++.+|+..|- . +..++...+..++--+.
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i---l----g~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV---L----GTKESPEVLARMEYEWY 178 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT---T----SCTTHHHHHHHHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH---h----cCCchHHHHHHHHHHHH
Confidence 544311 11233333333 221123366778889999999999999988873 1 22333355544444433
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 048090 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325 (447)
Q Consensus 274 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 325 (447)
..+... .++...-..++ -|...+++..|...++...+
T Consensus 179 ~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 179 KQDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 333211 11222223333 34456777777776655543
No 312
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=47.05 E-value=1.1e+02 Score=24.62 Aligned_cols=90 Identities=11% Similarity=0.046 Sum_probs=41.4
Q ss_pred HHHHHhcCChHHHHHHHHhhhhhcccCCCc---chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048090 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINK---DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307 (447)
Q Consensus 231 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 307 (447)
++.+....++++|..++++.+........+ ........+..-.....-.-+..+.+++.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 445555666666666666554433221111 011111222222222222233334444422 33455555666666
Q ss_pred hccCcHHHHHHHHHHH
Q 048090 308 SHTGQVKLGIEYFEWM 323 (447)
Q Consensus 308 ~~~~~~~~a~~~~~~~ 323 (447)
.+.|+.++|.++|-+.
T Consensus 102 ~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHH
Confidence 7777777777766554
No 313
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=46.97 E-value=39 Score=24.16 Aligned_cols=44 Identities=9% Similarity=-0.038 Sum_probs=21.4
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCC
Q 048090 57 VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK 100 (447)
Q Consensus 57 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 100 (447)
+++.+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 44444444455555555555555544444444444444444433
No 314
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=46.97 E-value=6.5 Score=29.40 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=23.2
Q ss_pred HHhhhhhhhhhcccccCCcchHHHhhccCCC
Q 048090 18 IFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP 48 (447)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~ 48 (447)
.-.++.+.-+.+.|+|.|++.|-++.+.|..
T Consensus 16 eeks~~L~~Lirs~~PeDL~~AN~LiK~m~~ 46 (158)
T 1naf_A 16 EEKSKMLARLLKSSHPEDLRAANKLIKEMVQ 46 (158)
T ss_dssp CHHHHHHHHHHSSCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHhc
Confidence 4566777778888888888888887777653
No 315
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=46.84 E-value=39 Score=24.77 Aligned_cols=35 Identities=14% Similarity=0.058 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCC
Q 048090 102 ARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136 (447)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 136 (447)
.-.|.++++.+.+.+...+..|.---++.+...|-
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 44555555555555444444443334455555554
No 316
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=46.77 E-value=73 Score=24.28 Aligned_cols=14 Identities=14% Similarity=-0.069 Sum_probs=6.3
Q ss_pred HhcCCHHHHHHHHH
Q 048090 163 CEAKLWAGGLELVR 176 (447)
Q Consensus 163 ~~~~~~~~a~~~~~ 176 (447)
+..|+.+-+..+++
T Consensus 114 ~~~~~~~~v~~Ll~ 127 (201)
T 3hra_A 114 AEKGHIDNVKLLLE 127 (201)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34455544444433
No 317
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=46.49 E-value=1.5e+02 Score=27.31 Aligned_cols=69 Identities=9% Similarity=-0.097 Sum_probs=40.9
Q ss_pred CCchHhHHHHHHHHHhcCCccHHHH----HHHHHhh-hCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 048090 366 SSSVSMWGALLSACHDCGKFELGKL----AAQKALE-LDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434 (447)
Q Consensus 366 p~~~~~~~~l~~~~~~~g~~~~a~~----~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 434 (447)
.+|......|-.-+...|..++-.+ .+...++ ..|.+......|-+.|.+.|++-+|.+++-.+-..+.
T Consensus 175 s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~~ 248 (525)
T 3i5p_A 175 YNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSNF 248 (525)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSSS
T ss_pred CChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCCC
Confidence 4466656666677777666543322 1112222 2345666677777788888888888888888876643
No 318
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=45.05 E-value=1.4e+02 Score=25.23 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc--HHHHHHHHHHHHHhcCCCCC
Q 048090 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ--VKLGIEYFEWMVHDYKLEPG 332 (447)
Q Consensus 265 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~ 332 (447)
...++.-|...|+.++|.+.++++...... ...+...+..+.-+.++ .+....++..+.+. ++-+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~-~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKS-STITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH-CSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHC-CCCCH
Confidence 356777788889999999999888532111 12334444445554322 45566777777665 44443
No 319
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=44.07 E-value=35 Score=24.81 Aligned_cols=44 Identities=11% Similarity=0.016 Sum_probs=19.2
Q ss_pred HHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCC
Q 048090 93 LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136 (447)
Q Consensus 93 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 136 (447)
+..+...++.-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 33333333444455555555444433344333334444444443
No 320
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=44.03 E-value=1.3e+02 Score=24.55 Aligned_cols=225 Identities=11% Similarity=-0.063 Sum_probs=111.2
Q ss_pred hhccCCCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCch----hHHHHHHHHHHHcCC
Q 048090 42 CLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA----RFGKQVQAHVTKSGW 117 (447)
Q Consensus 42 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~ 117 (447)
++..+..+|+..-...+.++.+.|. ..+...+..+... ++...-...+.++...+.. .....++..+...
T Consensus 28 L~~~L~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~d---~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~-- 101 (280)
T 1oyz_A 28 LFRLLDDHNSLKRISSARVLQLRGG-QDAVRLAIEFCSD---KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN-- 101 (280)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCC-HHHHHHHHHHHTC---SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--
T ss_pred HHHHHHcCCHHHHHHHHHHHHccCC-chHHHHHHHHHcC---CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--
Confidence 3334445565555556666666664 3455555555543 3444444444555554422 2223333322222
Q ss_pred CCchhhHHHHHHHHHccCC-----hhhHHHHh-ccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHH
Q 048090 118 LSSVFVGSALIDLYAKLLL-----IHDAELMF-DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLS 191 (447)
Q Consensus 118 ~~~~~~~~~l~~~~~~~g~-----~~~a~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 191 (447)
.++..+-...+.++...+. ...+...+ ..+..++...-...+.++...++.+ +...+..+.+ .++...-.
T Consensus 102 d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~ 177 (280)
T 1oyz_A 102 DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRN 177 (280)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHH
Confidence 3455555555666655541 22333333 3345666666666677777666533 4444444443 34554444
Q ss_pred HHHHHHhcCC-cHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHH
Q 048090 192 ALLRACAGLS-AAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270 (447)
Q Consensus 192 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~ 270 (447)
..+.++...+ ....+...+..+.. .++..+-...+.++.+.|+......+...+.. ++ .....+.
T Consensus 178 ~a~~aL~~~~~~~~~~~~~L~~~l~-----d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d-------~~--vr~~a~~ 243 (280)
T 1oyz_A 178 WAAFAININKYDNSDIRDCFVEMLQ-----DKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK-------NT--VYDDIIE 243 (280)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTT-----CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTS-------SS--CCHHHHH
T ss_pred HHHHHHHhhccCcHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcC-------cc--HHHHHHH
Confidence 4555554433 12333333333332 24666667777777777765544444443211 22 2234566
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 048090 271 VYGRNGYFKEVIKLYEAMLMN 291 (447)
Q Consensus 271 ~~~~~g~~~~a~~~~~~m~~~ 291 (447)
++.+.|. ..+...+.++...
T Consensus 244 aL~~i~~-~~~~~~L~~~l~~ 263 (280)
T 1oyz_A 244 AAGELGD-KTLLPVLDTMLYK 263 (280)
T ss_dssp HHHHHCC-GGGHHHHHHHHTT
T ss_pred HHHhcCc-hhhhHHHHHHHhc
Confidence 6677776 4566667766654
No 321
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=43.76 E-value=1.3e+02 Score=25.89 Aligned_cols=16 Identities=0% Similarity=-0.307 Sum_probs=8.8
Q ss_pred HHHhcCChHHHHHHHH
Q 048090 233 MYGKCGLVTKALQVFN 248 (447)
Q Consensus 233 ~~~~~g~~~~A~~~~~ 248 (447)
..+..|+.+-+..+++
T Consensus 179 ~A~~~g~~~~v~~Ll~ 194 (364)
T 3ljn_A 179 RAMEFRNREALDLMMD 194 (364)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHh
Confidence 3345566665555554
No 322
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=42.52 E-value=81 Score=28.94 Aligned_cols=78 Identities=10% Similarity=-0.030 Sum_probs=59.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHh
Q 048090 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAK 415 (447)
Q Consensus 336 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (447)
...|.+...-...++.|...|..+.... |.+...|+.|+......|+.-.|.-.|-+.+....|-+.+...+...+.+
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~--P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLV--PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhC--CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 3444555555667788999998888876 88888899998888888888888888888877776677777777776654
No 323
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=42.34 E-value=47 Score=24.49 Aligned_cols=63 Identities=6% Similarity=0.028 Sum_probs=37.8
Q ss_pred HHHHhcCCCCchhhHHHHHHHhccCC-chhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChh
Q 048090 75 SFMHVHGIFLDTYALCSSLTASTSVK-DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIH 138 (447)
Q Consensus 75 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 138 (447)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.---++.+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 345566666554332 3444444444 56677788888777665556555555667777777543
No 324
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=41.44 E-value=1.4e+02 Score=24.18 Aligned_cols=92 Identities=8% Similarity=-0.065 Sum_probs=42.1
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhcCCCC-------chhhHHHHHHHhc--cCCchhHHHHHHHHHHHcC--------
Q 048090 54 FNVVISDFCRNGSPLYALKTFSFMHVHGIFL-------DTYALCSSLTAST--SVKDARFGKQVQAHVTKSG-------- 116 (447)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~-------- 116 (447)
.+.|..+ ++.|+.+.+..+++...+.+... +..-.+.|..++. +.|+.+-+..+++.-...+
T Consensus 14 ~t~L~~A-~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~ 92 (273)
T 2pnn_A 14 RRSIFDA-VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNA 92 (273)
T ss_dssp HHHHHHH-HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTC
T ss_pred chHHHHH-HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhc
Confidence 3444333 45666666666666655544322 2222333333332 3466665555555432211
Q ss_pred -CC-CchhhHHHHHHHHHccCChhhHHHHhccC
Q 048090 117 -WL-SSVFVGSALIDLYAKLLLIHDAELMFDEI 147 (447)
Q Consensus 117 -~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 147 (447)
.. .|..-.+ .+...+..|+.+-+..+++.-
T Consensus 93 ~~~~~d~~g~t-pL~~A~~~g~~~~v~~Ll~~g 124 (273)
T 2pnn_A 93 SYTDSYYKGQT-ALHIAIERRNMTLVTLLVENG 124 (273)
T ss_dssp CCCSTTTTTCC-HHHHHHHTTCHHHHHHHHHTT
T ss_pred ccccccCCCCC-HHHHHHHcCCHHHHHHHHHCC
Confidence 00 1111222 233344566666666666553
No 325
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=41.14 E-value=58 Score=25.66 Aligned_cols=17 Identities=12% Similarity=-0.060 Sum_probs=8.4
Q ss_pred HHHhcCCccHHHHHHHH
Q 048090 378 ACHDCGKFELGKLAAQK 394 (447)
Q Consensus 378 ~~~~~g~~~~a~~~~~~ 394 (447)
..+..|+.+-+..+++.
T Consensus 183 ~A~~~~~~~~v~~Ll~~ 199 (240)
T 3eu9_A 183 WAVLAGNTTVISLLLEA 199 (240)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHc
Confidence 33455565555444444
No 326
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=40.93 E-value=73 Score=23.89 Aligned_cols=53 Identities=9% Similarity=-0.103 Sum_probs=39.6
Q ss_pred HhCCChhhHHHHHHHHHhcCCCC--chhhHHHHHH-H-----hccCCchhHHHHHHHHHHH
Q 048090 62 CRNGSPLYALKTFSFMHVHGIFL--DTYALCSSLT-A-----STSVKDARFGKQVQAHVTK 114 (447)
Q Consensus 62 ~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~~~~ 114 (447)
...|++-+|.++|+..-.....+ ....|..+|. . ..+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34599999999999997664455 5566777777 3 2456888889888888765
No 327
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=40.37 E-value=1.7e+02 Score=24.88 Aligned_cols=128 Identities=13% Similarity=0.135 Sum_probs=73.5
Q ss_pred ChhhHHHHHHHHHhc-C----CCCchhhHHHH---HHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCCh
Q 048090 66 SPLYALKTFSFMHVH-G----IFLDTYALCSS---LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLI 137 (447)
Q Consensus 66 ~~~~a~~~~~~m~~~-~----~~p~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 137 (447)
+-++|.-+|..+... + ..|+....... +..+.+..+ -+++..+.+.|+.|...++.-++..+.+.=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 457788888887643 2 22333222111 222222222 35777788889999888888888888888888
Q ss_pred hhHHHHhccCCC--CchhhHHHH--HH----HHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcC
Q 048090 138 HDAELMFDEIPV--KNSVCANAL--LS----GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200 (447)
Q Consensus 138 ~~a~~~~~~~~~--~~~~~~~~l--~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 200 (447)
+.+.++++.+.. +....+-++ +. ......+.++....+...... .+......++.-....
T Consensus 240 ~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~---~~~~di~~li~~A~~l 307 (331)
T 3qye_A 240 GFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPN---LGLVQMEKTINQVFEM 307 (331)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCC---CCHHHHHHHHHHHHhC
Confidence 999999887652 222222221 11 122345788888887764321 2333444555443333
No 328
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=40.01 E-value=35 Score=20.45 Aligned_cols=47 Identities=11% Similarity=-0.092 Sum_probs=28.5
Q ss_pred HHHHHHhhhCCC-chhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC
Q 048090 390 LAAQKALELDPH-NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438 (447)
Q Consensus 390 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 438 (447)
+..+.+.++.|. +.......+ -...|+.+.|+..+-.|...+..|+.
T Consensus 11 e~l~~L~emFP~ld~~~I~~vL--~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQEVIRSVL--EAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHH--TTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHH--HHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 334444455665 343333332 24578888898888888777777764
No 329
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=39.48 E-value=1.1e+02 Score=24.06 Aligned_cols=20 Identities=15% Similarity=0.044 Sum_probs=10.7
Q ss_pred HHHHHccCChhhHHHHhccC
Q 048090 128 IDLYAKLLLIHDAELMFDEI 147 (447)
Q Consensus 128 ~~~~~~~g~~~~a~~~~~~~ 147 (447)
+...+..|+.+-+..+++.-
T Consensus 81 L~~A~~~~~~~~~~~Ll~~~ 100 (237)
T 3b7b_A 81 LHLAAKKGHYEVVQYLLSNG 100 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTTT
T ss_pred HHHHHHcCCHHHHHHHHhCC
Confidence 33444556666666555543
No 330
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=38.21 E-value=65 Score=23.16 Aligned_cols=61 Identities=10% Similarity=0.047 Sum_probs=32.2
Q ss_pred HHhcCCCCchhhHHHHHHHhccCC-chhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChh
Q 048090 77 MHVHGIFLDTYALCSSLTASTSVK-DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIH 138 (447)
Q Consensus 77 m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 138 (447)
+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.---++.+...|-+.
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 4455655544322 3344444444 55567777777766655555555444556666666543
No 331
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=37.86 E-value=1.3e+02 Score=25.90 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=46.6
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCC-ch----hhHH--HHHHH----HHhcCCHHHHHHHH
Q 048090 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK-NS----VCAN--ALLSG----YCEAKLWAGGLELV 175 (447)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~----~~~~--~l~~~----~~~~~~~~~a~~~~ 175 (447)
+++..+.+.|+.|...++.-++..+.+.=.++.+.++++.+... +. ..|- +++.. .....++++.+.++
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 45666777788877777777777787777788888888877632 21 1121 12211 22346777777777
Q ss_pred Hhhhh
Q 048090 176 RLMPA 180 (447)
Q Consensus 176 ~~~~~ 180 (447)
+.+..
T Consensus 310 ~~~p~ 314 (345)
T 2qfz_A 310 QNLPT 314 (345)
T ss_dssp TSCSC
T ss_pred HcCCC
Confidence 66543
No 332
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=37.35 E-value=90 Score=25.79 Aligned_cols=164 Identities=9% Similarity=-0.073 Sum_probs=78.5
Q ss_pred cchHHHhhccC--CCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHH
Q 048090 36 LGTLTNCLKFL--NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113 (447)
Q Consensus 36 ~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 113 (447)
.++..+++..- ..+|..-++.|.. .+..|+.+-+. .+.+.|..++...-.+.+...+..|+.+-+. .++
T Consensus 12 ~~~v~~lL~~~~~~~~d~~g~t~L~~-A~~~g~~~~v~----~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll 82 (285)
T 3kea_A 12 SKQLKSFLSSKDTFKADVHGHSASYY-AIADNNVRLVC----TLLNAGALKNLLENEFPLHQAATLEDTKIVK----ILL 82 (285)
T ss_dssp HHHHHHHHHSTTTTCCCTTSCCHHHH-HHHTTCHHHHH----HHHHTTGGGSCCTTCCHHHHHTTSSSCHHHH----HHH
T ss_pred HHHHHHHHHhCCCCccCCCCCCHHHH-HHHcCCHHHHH----HHHhCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHH
Confidence 34444444332 2233333444444 45567765444 4444555444332234455556677766444 444
Q ss_pred HcCCCCchhh--HHHHHHHHHccCChhhHHHHhccCCCC---chhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCC-cH
Q 048090 114 KSGWLSSVFV--GSALIDLYAKLLLIHDAELMFDEIPVK---NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY-DH 187 (447)
Q Consensus 114 ~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~ 187 (447)
+.|..++... -.+.+...+..|+.+-+..+++.-..+ +...+.+.+...+..|+.+-+..+++. |..+ +.
T Consensus 83 ~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~ 158 (285)
T 3kea_A 83 FSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE----IPSTFDL 158 (285)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT----SCTTCCC
T ss_pred HCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhC----CCccccc
Confidence 5565544321 122344556678877777777663322 222223344445566776554444433 3222 21
Q ss_pred hhHHHHHHHHhcCCcHHHHHHHHHH
Q 048090 188 FTLSALLRACAGLSAAEFGRQVHAY 212 (447)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~a~~~~~~ 212 (447)
..-.+.+...+..|..+-+.-+++.
T Consensus 159 ~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 159 AILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp STHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCccHHHHHHHcChHHHHHHHHHc
Confidence 1222334444566776666555554
No 333
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=36.70 E-value=66 Score=21.31 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=12.2
Q ss_pred HHHHHHHHhcCCccHHHHHHHHH
Q 048090 373 GALLSACHDCGKFELGKLAAQKA 395 (447)
Q Consensus 373 ~~l~~~~~~~g~~~~a~~~~~~~ 395 (447)
......+.+.|++++|+...+++
T Consensus 19 ~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 19 SRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHhcCCHHHHHHHHHHH
Confidence 34445555555555555555543
No 334
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=35.86 E-value=1.6e+02 Score=23.09 Aligned_cols=14 Identities=7% Similarity=-0.114 Sum_probs=6.6
Q ss_pred HHhcCCHHHHHHHH
Q 048090 162 YCEAKLWAGGLELV 175 (447)
Q Consensus 162 ~~~~~~~~~a~~~~ 175 (447)
.+..|+.+-+..++
T Consensus 84 A~~~~~~~~~~~Ll 97 (237)
T 3b7b_A 84 AAKKGHYEVVQYLL 97 (237)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 34456655444443
No 335
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.39 E-value=1.3e+02 Score=27.69 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHH
Q 048090 335 HYSCLVDLLCRAGELDKAWKLINEM 359 (447)
Q Consensus 335 ~~~~l~~~~~~~g~~~~A~~~~~~~ 359 (447)
.++.+++.|...+.++.|..+..+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcC
Confidence 3444444445555555555554444
No 336
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=35.27 E-value=1.6e+02 Score=22.95 Aligned_cols=14 Identities=7% Similarity=-0.242 Sum_probs=5.9
Q ss_pred HhcCCHHHHHHHHH
Q 048090 163 CEAKLWAGGLELVR 176 (447)
Q Consensus 163 ~~~~~~~~a~~~~~ 176 (447)
++.|+.+....++.
T Consensus 14 ~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 14 AYSGKLDELKERIL 27 (231)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHH
Confidence 33444444444443
No 337
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=35.14 E-value=10 Score=29.21 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=13.7
Q ss_pred HHHHHHHHhCCChh---hHHHHHHHHHh
Q 048090 55 NVVISDFCRNGSPL---YALKTFSFMHV 79 (447)
Q Consensus 55 ~~l~~~~~~~~~~~---~a~~~~~~m~~ 79 (447)
...+.-+.+.|+++ +|-.+...|..
T Consensus 35 Sa~L~eLirs~~PeDL~~AN~LiK~m~~ 62 (186)
T 1oxz_A 35 SKMLARLLKSSHPEDLRAANKLIKEMVQ 62 (186)
T ss_dssp HHHHHHHHSCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHhc
Confidence 44555556665544 55555555544
No 338
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=34.97 E-value=1.2e+02 Score=21.33 Aligned_cols=49 Identities=14% Similarity=-0.035 Sum_probs=22.5
Q ss_pred CchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCC
Q 048090 84 LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136 (447)
Q Consensus 84 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 136 (447)
++...-...+.++.+.++.+ +...+..+.+ .++..+-...+.++.+.|+
T Consensus 54 ~~~~vR~~A~~aL~~~~~~~-a~~~L~~~L~---d~~~~VR~~A~~aL~~~~~ 102 (131)
T 1te4_A 54 EDWRIRGAAAWIIGNFQDER-AVEPLIKLLE---DDSGFVRSGAARSLEQIGG 102 (131)
T ss_dssp SCHHHHHHHHHHHGGGCSHH-HHHHHHHHHH---HCCTHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 34444445555555555432 3333333333 2344444455555555554
No 339
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=34.91 E-value=1.6e+02 Score=23.01 Aligned_cols=85 Identities=11% Similarity=-0.002 Sum_probs=42.7
Q ss_pred HHHhccCCchhHHHHHHHHHHHcCCCCchhh--HHHHHHHHHccCChhhHHHHhccCCCC---chhhHHHHHHHHHhcCC
Q 048090 93 LTASTSVKDARFGKQVQAHVTKSGWLSSVFV--GSALIDLYAKLLLIHDAELMFDEIPVK---NSVCANALLSGYCEAKL 167 (447)
Q Consensus 93 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 167 (447)
+...+..|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..+++.-..+ +....+. +...+..|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~ 91 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA-AHLACEHRS 91 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH-HHHHHHcCC
Confidence 4445566888877777777666665444321 122344455566666666665543322 2222222 222334555
Q ss_pred HHHHHHHHHhh
Q 048090 168 WAGGLELVRLM 178 (447)
Q Consensus 168 ~~~a~~~~~~~ 178 (447)
.+-+..+++..
T Consensus 92 ~~~~~~Ll~~~ 102 (241)
T 1k1a_A 92 PTCLRALLDSA 102 (241)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHcC
Confidence 55554444443
No 340
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.09 E-value=3.8e+02 Score=27.04 Aligned_cols=48 Identities=8% Similarity=0.015 Sum_probs=34.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHHcC
Q 048090 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAG 347 (447)
Q Consensus 299 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g 347 (447)
-|..++..+.+.+.++.+.++-+..+.... .-| ...|..+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 577888888899999999888888876421 112 346777777777655
No 341
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=33.58 E-value=92 Score=19.73 Aligned_cols=61 Identities=5% Similarity=0.001 Sum_probs=36.4
Q ss_pred HHHhcCCCCchhhHHHHHHHhccCC-chhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCCh
Q 048090 76 FMHVHGIFLDTYALCSSLTASTSVK-DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLI 137 (447)
Q Consensus 76 ~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 137 (447)
.+.+.|+.++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|-+
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 4556676665543 34455555544 4566777887777765555555655566666666643
No 342
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=33.11 E-value=1.3e+02 Score=27.16 Aligned_cols=64 Identities=11% Similarity=0.048 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCCh--------hhHH-HHHHHHHHcCCHHHHHHHHHHHHhC
Q 048090 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP--------EHYS-CLVDLLCRAGELDKAWKLINEMLDR 362 (447)
Q Consensus 298 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~ 362 (447)
...+.+...|.+.+++..+..++..+... +..|+. .+|. .+.+.+...+++.+|.+.+..+...
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~-~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPK-SMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHH-CCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccC-CCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 34677888999999999999999988776 553332 2333 3455667888999999988887665
No 343
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=32.71 E-value=87 Score=24.55 Aligned_cols=15 Identities=7% Similarity=0.011 Sum_probs=7.6
Q ss_pred HHhcCChHHHHHHHH
Q 048090 234 YGKCGLVTKALQVFN 248 (447)
Q Consensus 234 ~~~~g~~~~A~~~~~ 248 (447)
.+..|+.+....+++
T Consensus 13 A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 13 LAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHH
Confidence 344555555555554
No 344
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=31.84 E-value=69 Score=22.52 Aligned_cols=43 Identities=2% Similarity=-0.150 Sum_probs=27.9
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHHHHHc
Q 048090 73 TFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKS 115 (447)
Q Consensus 73 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 115 (447)
+|+.+....+.|+...-..-+..+...++++.|.+++..+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 4455555556555554444455566778888888888887763
No 345
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=31.36 E-value=77 Score=22.58 Aligned_cols=46 Identities=9% Similarity=0.151 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 048090 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312 (447)
Q Consensus 267 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 312 (447)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3445555555666777777777776655566666555666555543
No 346
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.89 E-value=1.9e+02 Score=22.56 Aligned_cols=63 Identities=6% Similarity=0.084 Sum_probs=40.2
Q ss_pred HHHHHH---hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc-----HHHHHHHHHHHHHhcCCCCC
Q 048090 268 MLGVYG---RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ-----VKLGIEYFEWMVHDYKLEPG 332 (447)
Q Consensus 268 l~~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~ 332 (447)
+|+++. +-.+.+.|+-++-+|++.| .|.-..-..++.+....|. ...|...++....- |.+-.
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~i-G~PE~ 87 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKL-GLPEA 87 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHH-CTTTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh-CCCHH
Confidence 445544 4578999999999999999 7766666666666666664 33344444444333 65433
No 347
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=30.68 E-value=44 Score=20.00 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHhcCCCCchhhHHHHHHHh
Q 048090 67 PLYALKTFSFMHVHGIFLDTYALCSSLTAS 96 (447)
Q Consensus 67 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 96 (447)
.++|.+.|.+|++..-.++.-||...++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 356777777776654444556777777766
No 348
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.66 E-value=1.6e+02 Score=21.57 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=24.8
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCc
Q 048090 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385 (447)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 385 (447)
|++++.. -..++..+...+..-.|.++++.+.+.+... +..|.+.-+..+...|-+
T Consensus 22 g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i-s~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 22 GLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNT-SISSVYRILNFLEKENFI 77 (150)
T ss_dssp C--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTC-CHHHHHHHHHHHHHTTSE
T ss_pred CCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC-CHhhHHHHHHHHHHCCcE
Confidence 5544432 2233444444455556666666665554222 233333444445555543
No 349
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=30.46 E-value=2.5e+02 Score=23.86 Aligned_cols=116 Identities=10% Similarity=0.016 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc---CC
Q 048090 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA---GE 348 (447)
Q Consensus 272 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~ 348 (447)
+...|++++|+..|+.+.. ...+.......+.+++.+++....+- ....-++.-.+. .+
T Consensus 124 ~~t~gKf~eAl~~Fr~iL~----------~i~l~~v~~~~e~~e~~eli~icrEY--------ilal~iEl~Rr~l~~~~ 185 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAIY----------RITLLMVDDAEDEKLAHKILETAREY--------ILGLSIELERRSLKEGN 185 (325)
T ss_dssp HHHTTCHHHHHHHHHHHHH----------HHHTCCBCSSHHHHHHHHHHHHHHHH--------HHHHHHHHHHHTCCTTC
T ss_pred HHhcCCHHHHHHHHHHHHH----------HhheeeeccHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhcCccc
Q ss_pred HHHHHHHHHHHHhCCCCCCchH-hHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhH
Q 048090 349 LDKAWKLINEMLDRGHGSSSVS-MWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405 (447)
Q Consensus 349 ~~~A~~~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 405 (447)
.....++---+...++.|.... +...-+....+.+++..|..+.+++++..|+....
T Consensus 186 ~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a 243 (325)
T 3mv2_A 186 TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRA 243 (325)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHH
No 350
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=30.24 E-value=61 Score=21.72 Aligned_cols=36 Identities=8% Similarity=-0.028 Sum_probs=21.0
Q ss_pred ChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHH
Q 048090 136 LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171 (447)
Q Consensus 136 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 171 (447)
+.+.|.++++.++...+.+|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 455666666666666666666666666554554433
No 351
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=30.01 E-value=5.9 Score=28.97 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=7.2
Q ss_pred HhhhhhhhhhcccccCCcchHHHhhccCC
Q 048090 19 FQSRLMLPYTTCRHKKNLGTLTNCLKFLN 47 (447)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~~ 47 (447)
-.++.+.-+.+.|+|.|++.|-++++.|.
T Consensus 8 ~ks~~L~~Lirs~~P~DL~~AN~LiK~m~ 36 (140)
T 1o3x_A 8 EKSKMLARLLKSSHPEDLRAANKLIKEMV 36 (140)
T ss_dssp -------------------CCCSSTHHHH
T ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 34566677777788888888877777664
No 352
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=29.87 E-value=1.6e+02 Score=21.38 Aligned_cols=59 Identities=10% Similarity=0.107 Sum_probs=33.3
Q ss_pred HhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCCcc
Q 048090 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386 (447)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 386 (447)
+..|++++..= ..+++.+...+ .-.|.++++.+.+.+... +..|.+.-+..+...|-+.
T Consensus 11 ~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~i-s~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 11 RQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGI-NISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTC-CHHHHHHHHHHHHHHTSEE
T ss_pred HHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCC-CHhHHHHHHHHHHHCCcEE
Confidence 33477766542 33444455555 667888888887766333 3344444555666666543
No 353
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=29.32 E-value=1e+02 Score=18.90 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 048090 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309 (447)
Q Consensus 264 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 309 (447)
.++.++..+++..-.++++..+.+..+.| ..+..+|.--++..++
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 35556666666666777777777777766 3355555555554444
No 354
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=29.24 E-value=71 Score=23.13 Aligned_cols=45 Identities=9% Similarity=0.155 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 048090 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311 (447)
Q Consensus 267 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 311 (447)
.++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 344555555555666667776666655555555555555555444
No 355
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=29.13 E-value=2.3e+02 Score=22.99 Aligned_cols=21 Identities=14% Similarity=0.001 Sum_probs=8.8
Q ss_pred HHHHHhcCCccHHHHHHHHHhh
Q 048090 376 LSACHDCGKFELGKLAAQKALE 397 (447)
Q Consensus 376 ~~~~~~~g~~~~a~~~~~~~~~ 397 (447)
+.++.+.|+. .+...+.+.++
T Consensus 242 ~~aL~~i~~~-~~~~~L~~~l~ 262 (280)
T 1oyz_A 242 IEAAGELGDK-TLLPVLDTMLY 262 (280)
T ss_dssp HHHHHHHCCG-GGHHHHHHHHT
T ss_pred HHHHHhcCch-hhhHHHHHHHh
Confidence 3444444442 34444444443
No 356
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=28.47 E-value=79 Score=24.57 Aligned_cols=24 Identities=8% Similarity=0.274 Sum_probs=16.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC
Q 048090 340 VDLLCRAGELDKAWKLINEMLDRG 363 (447)
Q Consensus 340 ~~~~~~~g~~~~A~~~~~~~~~~~ 363 (447)
+..|.+.|.+++|.+++++.....
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~ 147 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDP 147 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC---
T ss_pred HHHHHHccchHHHHHHHHHHhcCC
Confidence 345778888888888888865553
No 357
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=27.69 E-value=3e+02 Score=23.85 Aligned_cols=65 Identities=12% Similarity=0.172 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHHhcCCCC
Q 048090 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG--QVKLGIEYFEWMVHDYKLEP 331 (447)
Q Consensus 265 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~ 331 (447)
.+.++.-|...|+.++|.+.++++...... ...+...+..+.-+.+ ..+...+++..+... ++-+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~-glls 286 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STIT 286 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC-CCCC
Confidence 466777788888888888888887532111 2233444444444433 245566777777655 4433
No 358
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=27.49 E-value=2.2e+02 Score=22.14 Aligned_cols=21 Identities=19% Similarity=0.097 Sum_probs=11.4
Q ss_pred HHHcCCHHHHHHHHHHHHhCC
Q 048090 343 LCRAGELDKAWKLINEMLDRG 363 (447)
Q Consensus 343 ~~~~g~~~~A~~~~~~~~~~~ 363 (447)
.+..|+.+.+..+++.+.+.|
T Consensus 161 A~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 161 LILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HHTCSCHHHHHHHHHHHHHTT
T ss_pred HHHcCChHHHHHHHHHHHhcC
Confidence 345556555555555555554
No 359
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=27.46 E-value=1.1e+02 Score=25.27 Aligned_cols=136 Identities=11% Similarity=0.015 Sum_probs=70.2
Q ss_pred CcchHHHhhccCCCCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhh--HHHHHHHhccCCchhHHHHHHHHH
Q 048090 35 NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYA--LCSSLTASTSVKDARFGKQVQAHV 112 (447)
Q Consensus 35 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~ 112 (447)
+.+.+..+++.-..++...-.+.+...+..|+.+-+ +.+.+.|..++... -.+.+...+..|+.+-+. .+
T Consensus 43 ~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~----~L 114 (285)
T 3kea_A 43 NVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVK----LF 114 (285)
T ss_dssp CHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH----HH
T ss_pred CHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHH----HH
Confidence 466666666543222222122344445666776544 44445565544321 112333445566665444 44
Q ss_pred HHcCCCCchh---hHHHHHHHHHccCChhhHHHHhccCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHhh
Q 048090 113 TKSGWLSSVF---VGSALIDLYAKLLLIHDAELMFDEIPVK-NSVCANALLSGYCEAKLWAGGLELVRLM 178 (447)
Q Consensus 113 ~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (447)
++.|..++.. -+.+.+...+..|+.+-+..+++.-... +...-.+.+...+..|+.+-+.-+++.-
T Consensus 115 l~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 184 (285)
T 3kea_A 115 VKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYM 184 (285)
T ss_dssp HHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcC
Confidence 4445544432 2234566667788888888888775533 2212334444556778877666666543
No 360
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=27.40 E-value=1.9e+02 Score=21.50 Aligned_cols=73 Identities=11% Similarity=0.044 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCchHhHHHHHHHHHhcCCccH
Q 048090 313 VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR--GHGSSSVSMWGALLSACHDCGKFEL 387 (447)
Q Consensus 313 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~ 387 (447)
.+.+.+-+.+..+..|++++.. -..+++.+...+..-.|.++++.+.+. +... +..|.+.-+..+...|-+.+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~i-s~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNV-GIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCC-CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHCCCEEE
Confidence 4556666666555557777653 344556666667777888888888766 4323 33444455566677776553
No 361
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.23 E-value=1.8e+02 Score=21.21 Aligned_cols=52 Identities=10% Similarity=0.009 Sum_probs=32.2
Q ss_pred CccHHHHHHHHHhCC-ChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCch
Q 048090 51 PLPFNVVISDFCRNG-SPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102 (447)
Q Consensus 51 ~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 102 (447)
+..-..++..+...+ ..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 16 T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 16 TLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp CHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 334455666666555 6677888888877766666666655555555555543
No 362
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.07 E-value=1.7e+02 Score=20.85 Aligned_cols=52 Identities=12% Similarity=0.032 Sum_probs=31.3
Q ss_pred CccHHHHHHHHHhCC-ChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCch
Q 048090 51 PLPFNVVISDFCRNG-SPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102 (447)
Q Consensus 51 ~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 102 (447)
+..-..++..+...+ ..-.|.++++.+.+.+...+..|....+..+.+.|-+
T Consensus 17 T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 17 TLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp CHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 334455666666665 6777888888777766666666655555555444433
No 363
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=26.95 E-value=1.3e+02 Score=19.27 Aligned_cols=39 Identities=10% Similarity=-0.032 Sum_probs=27.3
Q ss_pred HHHhhccCC--CCCCccHHHHHHHHHhCCChhhHHHHHHHH
Q 048090 39 LTNCLKFLN--PRNPLPFNVVISDFCRNGSPLYALKTFSFM 77 (447)
Q Consensus 39 A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 77 (447)
-..++.+++ +|++.||+-+.+.+-+..-..++..+.+++
T Consensus 22 P~~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 22 PKQLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp CHHHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CHHHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 356777776 689999998888766665556666665554
No 364
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=26.93 E-value=2.8e+02 Score=23.25 Aligned_cols=262 Identities=11% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 048090 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235 (447)
Q Consensus 156 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 235 (447)
++.+...++.|+.+-+..+++.-..-....+..-++.|..++.... .++.+.+++.+.............+....
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~-----~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~ 100 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSR-----EDIVELLLRHGADPVLRKKNGATPFILAA 100 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCC-----HHHHHHHHHcCCchhhhccCCCchhHHHH
Q ss_pred hcCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH------------HH
Q 048090 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV------------TV 303 (447)
Q Consensus 236 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~------------~l 303 (447)
..+...........-... ...+..-++.+..+..... .++.+.+.+.|..++..... +.
T Consensus 101 ~~~~~~~~~~~~~~~~~~----~~~d~~g~t~l~~A~~~~~-----~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~ 171 (337)
T 4g8k_A 101 IAGSVKLLKLFLSKGADV----NECDFYGFTAFMEAAVYGK-----VKALKFLYKRGANVNLRRKTKEDQERLRKGGATA 171 (337)
T ss_dssp HHTCHHHHHHHHTTTCCT----TCBCTTCCBHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCCCC-----CTTCSCCH
T ss_pred hcccchhhHHhhhccchh----hhhccCCCCHHHHHHHcCc-----HHHHHHHHHcCCCcchhhccccccccccCCCCcH
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhH-HHHHHHHH
Q 048090 304 ISACSHTGQVKLGIEYFEWMVHDYKLEPG--PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW-GALLSACH 380 (447)
Q Consensus 304 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~~l~~~~~ 380 (447)
+...+..|+.+-+..++++. |..++ ...-...+...+..+.......+.+-+++.|..++..... .+-+...+
T Consensus 172 L~~A~~~g~~~~v~~LL~~~----gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~ 247 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLDEM----GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 247 (337)
T ss_dssp HHHHHHHTCHHHHHHHHHHS----CCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhcc----CCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Q ss_pred hcCCccHHHHHHHH-HhhhCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCcc
Q 048090 381 DCGKFELGKLAAQK-ALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGC 440 (447)
Q Consensus 381 ~~g~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 440 (447)
..|..+....+++. -...+..+..-...|..+..... .++.+.+.+.|..||..+
T Consensus 248 ~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~-----~~iv~~Ll~~GAd~n~~~ 303 (337)
T 4g8k_A 248 EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL-----KKIAELLCKRGASTDCGD 303 (337)
T ss_dssp HTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTC-----HHHHHHHHTTSCSSTTCC
T ss_pred HhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCCCC
No 365
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=26.71 E-value=2.3e+02 Score=22.09 Aligned_cols=45 Identities=20% Similarity=0.249 Sum_probs=31.4
Q ss_pred HHHHHH---hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 048090 268 MLGVYG---RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312 (447)
Q Consensus 268 l~~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 312 (447)
+|+++. +-.+.+.|+-++-+|++.|..|.-..-..++.+.-..|.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 445544 457889999999999998877766666666666555443
No 366
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=26.08 E-value=3.7e+02 Score=24.37 Aligned_cols=139 Identities=10% Similarity=-0.125 Sum_probs=0.0
Q ss_pred cCCcchHHHhhccCC-CCCCccHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHhccCCchhHHHHHHHH
Q 048090 33 KKNLGTLTNCLKFLN-PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111 (447)
Q Consensus 33 ~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 111 (447)
+.+.+-|.++-.+.. +--...|..-.+.+...|++++|.++--...+.-++ +..|.+.+-..=..-|+..--+++|..
T Consensus 342 l~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLR-t~~Ti~rFk~vp~~pgq~splL~YF~~ 420 (494)
T 1bpo_A 342 LQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILR-TPDTIRRFQSVPAQPGQTSPLLQYFGI 420 (494)
T ss_dssp TCCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSC-SHHHHHHHTTSCCCTTSCCHHHHHHHH
T ss_pred cCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcccccc-CHHHHHHHhcCCCCCCCCCHHHHHHHH
Q ss_pred HHHcCCCCchhhHHHHHHHHHccCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHh
Q 048090 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177 (447)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 177 (447)
+.+.| ..+..----+++.-...|+.+-.++.+.+=+-.-..-.--++ +..+..-|+.+|.+
T Consensus 421 Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e~KL~~SEeLGDlv----k~~d~~LAl~IY~~ 481 (494)
T 1bpo_A 421 LLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLV----KSVDPTLALSVYLR 481 (494)
T ss_dssp HHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCSCCCHHHHHHH----HHHCSHHHHHHHHH
T ss_pred HhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhcCCccccHHhHhhh----hhcCHHHHHHHHHH
No 367
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=26.07 E-value=3.6e+02 Score=24.20 Aligned_cols=104 Identities=13% Similarity=-0.060 Sum_probs=55.1
Q ss_pred CCchhhHHHHHHHhccCCchhHHHHHHHHHHHcCCCC----chhhHHHHHHHHHccCChhhHHHHhccCC---CCchhhH
Q 048090 83 FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLS----SVFVGSALIDLYAKLLLIHDAELMFDEIP---VKNSVCA 155 (447)
Q Consensus 83 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~ 155 (447)
..+......++.. ..|+...+..+++.+....... ...+ .+...+++.... ..+...+
T Consensus 191 ~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It-------------~e~v~~~l~~~~~~~dk~gd~~ 255 (447)
T 3pvs_A 191 VLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLK-------------PELLTEIAGERSARFDNKGDRF 255 (447)
T ss_dssp ECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECC-------------HHHHHHHHTCCCCC---CCHHH
T ss_pred cCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccC-------------HHHHHHHHhhhhhccCCccchH
Confidence 3445555555544 3577777777777665532100 1111 222333333322 1122233
Q ss_pred HHHHHHHH---hcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCC
Q 048090 156 NALLSGYC---EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLS 201 (447)
Q Consensus 156 ~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 201 (447)
..+++++. +.++.+.|+..+.+|.+.|..|....-..+..+....|
T Consensus 256 yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 256 YDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 34444443 45899999999999999987766555444444444333
No 368
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.55 E-value=1.9e+02 Score=20.90 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=23.1
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCchHhHHHHHHHHHhcCC
Q 048090 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384 (447)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 384 (447)
|++++..= ..++..+...+..-.|.++++.+.+.+... +..|.+.-+..+...|-
T Consensus 17 g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i-s~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 17 GVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNM-SVATVYNNLRVFRESGL 71 (145)
T ss_dssp TCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTC-CHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCC-ChhhHHHHHHHHHHCCC
Confidence 54444322 223333334444455555555555544222 22233333444444443
No 369
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=25.18 E-value=2.5e+02 Score=22.09 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=42.4
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc-----HHHHHHHHHHHHHhcCCCC
Q 048090 265 WTSMLGVYG---RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ-----VKLGIEYFEWMVHDYKLEP 331 (447)
Q Consensus 265 ~~~l~~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~ 331 (447)
+--+|+++. +-.+.+.|+-++-+|++.|..|.-..-..++.+.-..|. ...|...++....- |.+-
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~i-G~PE 108 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRV-GFPE 108 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHH-CTTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh-CCCH
Confidence 334555554 457899999999999999988877666666666665554 33444444444333 5443
No 370
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=25.15 E-value=1.5e+02 Score=19.46 Aligned_cols=35 Identities=9% Similarity=-0.005 Sum_probs=22.1
Q ss_pred cCChhhHHHHhccCCCCchhhHHHHHHHHHhcCCH
Q 048090 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168 (447)
Q Consensus 134 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (447)
....++|..+++.+......+|..++.++...+..
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~ 83 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYK 83 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHH
Confidence 34556666666666666666666666666665543
No 371
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=24.56 E-value=4.7e+02 Score=25.03 Aligned_cols=218 Identities=9% Similarity=0.006 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhcCCCCcHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHh-
Q 048090 158 LLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK- 236 (447)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 236 (447)
...++.-.|+++.|++.+-+. ...+.+.+...+..+.-.+- -+.+... .......-+..|+..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~-------~~~lls~--~~~~~~lN~arLI~~Yt~~ 366 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI-------DSSTRLT--KKPKRDIRFANILANYTKS 366 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC--------------------------CHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC-------CCccccc--CCCcccccHHHHHHHHHHH
Q ss_pred --cCChHHHHHHHHhhhhhcccCCCcchhhHHHHHHHHHhcCCHHHHH-----------HHHHHHHhCCCCCCH------
Q 048090 237 --CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI-----------KLYEAMLMNGTKPDE------ 297 (447)
Q Consensus 237 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-----------~~~~~m~~~~~~p~~------ 297 (447)
..++..|.++|-.+ ....|..--...+..+-......++++.-+ .++++-... +..+.
T Consensus 367 F~~td~~~Al~Y~~li--~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~l-i~l~d~~~~~~ 443 (661)
T 2qx5_A 367 FRYSDPRVAVEYLVLI--TLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPL-LHVRDEKEFLH 443 (661)
T ss_dssp TTTTCHHHHHHHHHGG--GGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGG-GTCSCHHHHHH
T ss_pred hhcCCHHHHHHHHHHH--hccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcc-cccccHHHHHH
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC----------------HHHHHHHHHHHHh
Q 048090 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE----------------LDKAWKLINEMLD 361 (447)
Q Consensus 298 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------------~~~A~~~~~~~~~ 361 (447)
........-+...|+++.|..+|+-+. ...--..+.+.++.-....-. ...|.++.+....
T Consensus 444 ~i~~~aA~~ae~~G~~~dAi~LY~La~---~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~ 520 (661)
T 2qx5_A 444 TITEQAARRADEDGRIYDSILLYQLAE---EYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFD 520 (661)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhc
Q ss_pred C-----CCCCCchHhHHHHHH-----HHHhcCCccHHHHHHHH
Q 048090 362 R-----GHGSSSVSMWGALLS-----ACHDCGKFELGKLAAQK 394 (447)
Q Consensus 362 ~-----~~~p~~~~~~~~l~~-----~~~~~g~~~~a~~~~~~ 394 (447)
. .+.+.+..++..|+. .+...|+++.|.+.+++
T Consensus 521 ~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~ 563 (661)
T 2qx5_A 521 NAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMEL 563 (661)
T ss_dssp CHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
No 372
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=24.41 E-value=1.2e+02 Score=25.88 Aligned_cols=110 Identities=14% Similarity=0.099 Sum_probs=63.4
Q ss_pred ChhhHHHHHHHHHhcC-----CCCchh---hHHHHHHHhccCCchhHHHHHHHHHHHcCCCCchhhHHHHHHHHHccCCh
Q 048090 66 SPLYALKTFSFMHVHG-----IFLDTY---ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLI 137 (447)
Q Consensus 66 ~~~~a~~~~~~m~~~~-----~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 137 (447)
+-++|.-+|..+...- ..++.. .+...+..+.+..+ -+++..+.+.|+.|...++.-++..+.+.=.+
T Consensus 169 ~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~----P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~ 244 (334)
T 2qq8_A 169 DTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENL----PKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPL 244 (334)
T ss_dssp CHHHHHHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCH
T ss_pred CHHHHHHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHC----HHHHHHHHHcCCCccchHHHHHHHHhcccCCH
Confidence 4567888887775421 122322 22223333333222 24677778888888888888888888888888
Q ss_pred hhHHHHhccCCCC-chhhHHHH---HHH---HHhcCCHHHHHHHHHhhh
Q 048090 138 HDAELMFDEIPVK-NSVCANAL---LSG---YCEAKLWAGGLELVRLMP 179 (447)
Q Consensus 138 ~~a~~~~~~~~~~-~~~~~~~l---~~~---~~~~~~~~~a~~~~~~~~ 179 (447)
+.+.++++-+... +...+... +.. -....++++...++..+.
T Consensus 245 ~~~lriWD~~l~eg~~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~lp 293 (334)
T 2qq8_A 245 DLACRIWDVFCRDGEEFLFRTALGILKLFEDILTKMDFIHMAQFLTRLP 293 (334)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Confidence 8898888877522 22221111 111 122346777777776543
No 373
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=24.28 E-value=3.3e+02 Score=23.14 Aligned_cols=85 Identities=7% Similarity=-0.096 Sum_probs=36.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhC-C--CCCCchHhHHHHHHHHHhcCCccHHHHHHHHHhhhCCCchhHHHHHHHHHHhcCC
Q 048090 342 LLCRAGELDKAWKLINEMLDR-G--HGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCM 418 (447)
Q Consensus 342 ~~~~~g~~~~A~~~~~~~~~~-~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 418 (447)
..+..|+.+-+..+++.-... + +...+..-...|. ..+..|+.+-+..+++.-...+..+..-...|. ..++.|+
T Consensus 179 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~-~A~~~g~ 256 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAILINWEDVAMRFVEMGIDVNMEDNEHTVPLY-LSVRAAM 256 (364)
T ss_dssp HHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHH-HHHHTCC
T ss_pred HHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH-HHHHhCh
Confidence 345677777666666543320 0 0011111122222 334556665554444432222222322222333 2345577
Q ss_pred hHHHHHHHHH
Q 048090 419 WDEIGQLREL 428 (447)
Q Consensus 419 ~~~A~~~~~~ 428 (447)
.+-+.-+++.
T Consensus 257 ~~~v~~Ll~~ 266 (364)
T 3ljn_A 257 VLLTKELLQK 266 (364)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 6655555543
No 374
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=24.08 E-value=2e+02 Score=20.51 Aligned_cols=15 Identities=7% Similarity=-0.212 Sum_probs=7.5
Q ss_pred HhcCCHHHHHHHHHh
Q 048090 163 CEAKLWAGGLELVRL 177 (447)
Q Consensus 163 ~~~~~~~~a~~~~~~ 177 (447)
+..|+.+.+..+++.
T Consensus 10 ~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 10 AARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHh
Confidence 344555555555444
No 375
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=23.95 E-value=2.5e+02 Score=21.72 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=14.9
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHh
Q 048090 194 LRACAGLSAAEFGRQVHAYMIRK 216 (447)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~~~~~ 216 (447)
+...+..|+.+.+..+++.+.+.
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~ 180 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSY 180 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCChHHHHHHHHHHHhc
Confidence 33445667777777777777776
No 376
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=23.66 E-value=2.6e+02 Score=21.66 Aligned_cols=15 Identities=13% Similarity=-0.155 Sum_probs=6.3
Q ss_pred HHccCChhhHHHHhc
Q 048090 131 YAKLLLIHDAELMFD 145 (447)
Q Consensus 131 ~~~~g~~~~a~~~~~ 145 (447)
.+..|+.+-+..+++
T Consensus 49 A~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 49 AAINNRIDLVKYYIS 63 (240)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHH
Confidence 334444444444443
No 377
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=23.23 E-value=2.3e+02 Score=23.25 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=43.1
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048090 304 ISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360 (447)
Q Consensus 304 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 360 (447)
-..|....++.....++..|.....-.|+......++++|.+.-+-..|.+.++.-.
T Consensus 180 ~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~L 236 (268)
T 2fv2_A 180 AYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCL 236 (268)
T ss_dssp HHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHS
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 345666677777778888887765567888888888888888888888888777654
No 378
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=22.64 E-value=1e+02 Score=22.12 Aligned_cols=12 Identities=8% Similarity=0.069 Sum_probs=4.8
Q ss_pred CCChhhHHHHHH
Q 048090 64 NGSPLYALKTFS 75 (447)
Q Consensus 64 ~~~~~~a~~~~~ 75 (447)
.|+.+.+..+++
T Consensus 12 ~g~~~~v~~ll~ 23 (156)
T 1bd8_A 12 RGDVQEVRRLLH 23 (156)
T ss_dssp HTCHHHHHHHHH
T ss_pred hCCHHHHHHHHH
Confidence 344444433333
No 379
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=22.27 E-value=3.4e+02 Score=22.61 Aligned_cols=109 Identities=9% Similarity=-0.038 Sum_probs=54.5
Q ss_pred HHHHHHccCChhhHHHHhccCC----CCchhhHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCc---HhhHHHHHHHHhc
Q 048090 127 LIDLYAKLLLIHDAELMFDEIP----VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYD---HFTLSALLRACAG 199 (447)
Q Consensus 127 l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 199 (447)
.+...++.|+.+....++.... ..|..-.+. +...+..|+.+-+..+++ .|..++ ....+.+..+ +.
T Consensus 27 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A-~~ 100 (351)
T 3utm_A 27 ELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTP-LHLAAGYNRVRIVQLLLQ----HGADVHAKDKGGLVPLHNA-CS 100 (351)
T ss_dssp HHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCH-HHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHH-HH
T ss_pred hHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCH-HHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCcHHHHH-HH
Confidence 4455567889998888887643 123322333 333456677665544444 343332 2223333333 34
Q ss_pred CCcHHHHHHHHHHHHHhhhcCCCCh---hHHHHHHHHHHhcCChHHHHHHHH
Q 048090 200 LSAAEFGRQVHAYMIRKCCNLGNDV---FMQSSLIEMYGKCGLVTKALQVFN 248 (447)
Q Consensus 200 ~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~ 248 (447)
.|+.+- ++.+++. +..++. .-++ .+...+..|+.+-+..+++
T Consensus 101 ~g~~~i----v~~Ll~~--g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~ 145 (351)
T 3utm_A 101 YGHYEV----TELLLKH--GACVNAMDLWQFT-PLHEAASKNRVEVCSLLLS 145 (351)
T ss_dssp TTCHHH----HHHHHHT--TCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHH----HHHHHHC--CCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHH
Confidence 565543 3444444 333322 1222 3344456677776666655
No 380
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=22.20 E-value=2.3e+02 Score=25.64 Aligned_cols=61 Identities=7% Similarity=-0.060 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc--------hHhHHHHHHHHHhcCCccHHHHHHHHHh
Q 048090 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSS--------VSMWGALLSACHDCGKFELGKLAAQKAL 396 (447)
Q Consensus 336 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--------~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 396 (447)
.+.|.+.|.+.++...+..+++.+...+..|+- ++....++..+...+++.+|.+.+..+.
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~ 247 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAF 247 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHH
Confidence 466777888888888888888877766542221 1123445556666667666666666543
No 381
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=22.15 E-value=19 Score=29.46 Aligned_cols=43 Identities=12% Similarity=0.053 Sum_probs=0.0
Q ss_pred chhHHHhhhhhhhhHHHhhhhhhhhhcccccCCcchHHHhhcc
Q 048090 3 HAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKF 45 (447)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~ 45 (447)
|++|.+.|+-.+|.....-.++.--.++.+.|++++|..++.+
T Consensus 6 ~~~m~ks~~g~dp~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~e 48 (257)
T 2ymb_A 6 HHHMAKSGLRQDPQSTAAATVLKRAVELDSESRYPQALVCYQE 48 (257)
T ss_dssp -------------------------------------------
T ss_pred hhhhhhccCCCChhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6788888887666555555566666666666777777776654
No 382
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=21.71 E-value=90 Score=18.62 Aligned_cols=24 Identities=4% Similarity=0.087 Sum_probs=16.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCch
Q 048090 346 AGELDKAWKLINEMLDRGHGSSSV 369 (447)
Q Consensus 346 ~g~~~~A~~~~~~~~~~~~~p~~~ 369 (447)
.-+++.|...|.++...|-.|++.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 347788888888877766556543
No 383
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=21.19 E-value=1.6e+02 Score=19.08 Aligned_cols=29 Identities=7% Similarity=0.069 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 048090 313 VKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342 (447)
Q Consensus 313 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 342 (447)
.++|...|..|+.+.++.|+. +|...+..
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~~-tWe~~~~~ 44 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAFS-TWEKELHK 44 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSSS-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCCC-CHHHHHHH
Confidence 456666666666665555543 34444433
No 384
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=21.17 E-value=96 Score=15.79 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=14.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 048090 408 MLSNLYAKFCMWDEIGQLRELMK 430 (447)
Q Consensus 408 ~l~~~~~~~g~~~~A~~~~~~m~ 430 (447)
..+.-|...|..++|..+-++|+
T Consensus 7 QW~eYYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 7 QWAEYYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHH
Confidence 34556677777777777666554
No 385
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=20.78 E-value=1.9e+02 Score=19.16 Aligned_cols=50 Identities=8% Similarity=0.003 Sum_probs=34.6
Q ss_pred hCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHh-----ccCCchhHHHHHHHHHHH
Q 048090 63 RNGSPLYALKTFSFMHVHGIFLDTYALCSSLTAS-----TSVKDARFGKQVQAHVTK 114 (447)
Q Consensus 63 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~ 114 (447)
..|++-+|.++|+..-.....|....|..+|... .+.|+. |..++.+...
T Consensus 13 n~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 13 RAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 4599999999999997665445556677777643 245666 7777766655
No 386
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.09 E-value=4.1e+02 Score=22.68 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhh
Q 048090 226 MQSSLIEMYGKCGLVTKALQVFNLA 250 (447)
Q Consensus 226 ~~~~l~~~~~~~g~~~~A~~~~~~~ 250 (447)
....++.-|...|+.++|.+.++++
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 3577888889999999999999854
Done!