Query 048095
Match_columns 535
No_of_seqs 225 out of 263
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 06:12:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048095.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048095hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07899 Frigida: Frigida-like 100.0 6.4E-63 1.4E-67 503.0 20.9 204 318-522 7-219 (290)
2 TIGR02168 SMC_prok_B chromosom 99.0 4.2E-06 9E-11 99.3 38.4 95 8-102 167-272 (1179)
3 TIGR02169 SMC_prok_A chromosom 98.9 5E-06 1.1E-10 99.0 38.9 101 8-108 165-283 (1164)
4 COG1196 Smc Chromosome segrega 98.9 2E-05 4.3E-10 95.2 40.4 92 8-99 174-276 (1163)
5 TIGR02169 SMC_prok_A chromosom 98.7 0.0001 2.2E-09 88.0 39.5 28 8-35 172-199 (1164)
6 TIGR02168 SMC_prok_B chromosom 98.6 0.00016 3.5E-09 86.0 37.8 99 7-105 671-769 (1179)
7 PRK02224 chromosome segregatio 98.4 0.001 2.3E-08 78.0 37.1 40 18-57 354-393 (880)
8 PRK01156 chromosome segregatio 98.4 0.0055 1.2E-07 72.2 42.2 19 327-345 739-757 (895)
9 KOG0250 DNA repair protein RAD 98.4 0.0014 3E-08 76.8 35.9 341 14-381 208-565 (1074)
10 COG1196 Smc Chromosome segrega 98.4 0.0026 5.7E-08 77.2 38.8 23 435-457 1070-1092(1163)
11 PRK01156 chromosome segregatio 98.3 0.0045 9.8E-08 73.0 37.4 24 249-272 474-497 (895)
12 TIGR00606 rad50 rad50. This fa 98.2 0.0039 8.6E-08 76.5 35.3 37 7-43 745-781 (1311)
13 TIGR00606 rad50 rad50. This fa 98.1 0.006 1.3E-07 75.0 35.5 119 48-176 744-862 (1311)
14 PRK04863 mukB cell division pr 98.1 0.012 2.5E-07 72.9 36.7 186 6-196 293-488 (1486)
15 PF00261 Tropomyosin: Tropomyo 98.1 0.00075 1.6E-08 67.7 22.4 55 154-208 180-234 (237)
16 PF10174 Cast: RIM-binding pro 98.1 0.016 3.4E-07 67.4 35.7 28 171-198 465-492 (775)
17 KOG0161 Myosin class II heavy 98.0 0.02 4.3E-07 71.7 36.3 80 134-213 1060-1139(1930)
18 PRK03918 chromosome segregatio 98.0 0.039 8.4E-07 64.8 37.3 10 253-262 461-470 (880)
19 KOG0161 Myosin class II heavy 98.0 0.04 8.7E-07 69.2 38.2 41 140-180 996-1036(1930)
20 KOG0933 Structural maintenance 98.0 0.049 1.1E-06 63.7 35.9 39 425-463 1074-1114(1174)
21 PF00261 Tropomyosin: Tropomyo 98.0 0.011 2.3E-07 59.5 27.5 87 14-100 2-88 (237)
22 KOG0250 DNA repair protein RAD 97.9 0.014 3E-07 68.8 31.2 149 140-297 299-447 (1074)
23 KOG0933 Structural maintenance 97.8 0.072 1.6E-06 62.4 34.1 44 14-57 678-724 (1174)
24 KOG0996 Structural maintenance 97.8 0.046 1E-06 64.8 31.6 155 58-219 408-562 (1293)
25 KOG4674 Uncharacterized conser 97.8 0.1 2.2E-06 65.0 35.6 141 155-295 176-321 (1822)
26 KOG0976 Rho/Rac1-interacting s 97.7 0.17 3.7E-06 58.1 34.6 31 164-194 266-296 (1265)
27 KOG0996 Structural maintenance 97.7 0.12 2.5E-06 61.6 33.4 56 242-297 498-553 (1293)
28 PRK11637 AmiB activator; Provi 97.7 0.043 9.3E-07 59.6 28.0 90 16-105 43-132 (428)
29 KOG0976 Rho/Rac1-interacting s 97.6 0.23 4.9E-06 57.2 35.4 208 27-237 92-322 (1265)
30 PHA02562 46 endonuclease subun 97.6 0.087 1.9E-06 58.7 30.2 10 364-373 495-504 (562)
31 PF07888 CALCOCO1: Calcium bin 97.6 0.21 4.5E-06 55.9 35.3 94 13-106 143-236 (546)
32 KOG4674 Uncharacterized conser 97.5 0.55 1.2E-05 58.8 36.6 37 143-179 199-239 (1822)
33 KOG0964 Structural maintenance 97.5 0.25 5.4E-06 58.0 31.2 323 11-346 175-532 (1200)
34 KOG0995 Centromere-associated 97.4 0.37 7.9E-06 53.8 32.8 41 143-183 353-393 (581)
35 PHA02562 46 endonuclease subun 97.3 0.14 3E-06 57.0 27.0 51 175-225 327-377 (562)
36 COG1579 Zn-ribbon protein, pos 97.2 0.1 2.2E-06 52.7 22.5 77 12-88 9-85 (239)
37 PRK11637 AmiB activator; Provi 97.2 0.44 9.5E-06 51.9 28.8 90 24-113 44-133 (428)
38 PRK04778 septation ring format 97.1 0.77 1.7E-05 51.9 35.2 54 13-66 105-158 (569)
39 KOG0977 Nuclear envelope prote 97.0 0.87 1.9E-05 51.1 29.8 102 20-121 92-193 (546)
40 COG1579 Zn-ribbon protein, pos 97.0 0.19 4.1E-06 50.9 21.6 72 29-100 12-83 (239)
41 PF05483 SCP-1: Synaptonemal c 96.9 1.1 2.5E-05 50.9 36.3 107 61-172 334-440 (786)
42 PF00038 Filament: Intermediat 96.9 0.73 1.6E-05 47.6 27.5 59 46-104 80-138 (312)
43 PF05667 DUF812: Protein of un 96.8 0.32 6.8E-06 55.4 24.1 200 18-229 326-528 (594)
44 PF09728 Taxilin: Myosin-like 96.8 0.85 1.8E-05 47.9 31.9 53 27-79 15-67 (309)
45 PF05701 WEMBL: Weak chloropla 96.8 1.3 2.8E-05 49.8 36.2 59 58-116 133-191 (522)
46 PF15619 Lebercilin: Ciliary p 96.7 0.73 1.6E-05 45.3 23.5 34 149-182 124-157 (194)
47 PF07888 CALCOCO1: Calcium bin 96.6 1.7 3.7E-05 48.8 36.9 100 18-117 141-240 (546)
48 KOG0995 Centromere-associated 96.5 2 4.3E-05 48.2 35.1 63 33-95 258-320 (581)
49 COG4942 Membrane-bound metallo 96.5 1.8 3.9E-05 47.2 26.7 73 13-85 38-110 (420)
50 PF00038 Filament: Intermediat 96.5 1.4 3E-05 45.6 29.3 46 58-103 85-130 (312)
51 PF10473 CENP-F_leu_zip: Leuci 96.4 0.56 1.2E-05 43.8 18.8 109 11-119 8-116 (140)
52 PF05667 DUF812: Protein of un 96.4 1.3 2.9E-05 50.4 25.4 160 41-225 321-480 (594)
53 KOG0612 Rho-associated, coiled 96.4 3.7 7.9E-05 49.8 29.4 20 151-170 561-580 (1317)
54 COG5185 HEC1 Protein involved 96.4 2.1 4.6E-05 47.0 26.0 147 35-210 296-442 (622)
55 KOG0018 Structural maintenance 96.3 2.2 4.8E-05 50.9 26.9 41 436-476 1056-1096(1141)
56 PF12718 Tropomyosin_1: Tropom 96.3 0.66 1.4E-05 43.4 18.6 51 21-71 8-58 (143)
57 KOG1029 Endocytic adaptor prot 96.2 2 4.3E-05 49.7 24.8 84 30-113 419-502 (1118)
58 PF08317 Spc7: Spc7 kinetochor 96.2 0.56 1.2E-05 49.4 19.5 111 10-120 153-267 (325)
59 PF06160 EzrA: Septation ring 96.1 3.3 7.1E-05 46.9 34.4 54 12-65 100-153 (560)
60 PRK04778 septation ring format 96.1 3.6 7.7E-05 46.7 36.8 51 7-57 106-156 (569)
61 COG1340 Uncharacterized archae 96.1 2.3 4.9E-05 44.3 25.8 92 9-100 9-100 (294)
62 KOG0018 Structural maintenance 96.0 5.3 0.00011 47.9 29.8 83 40-122 200-287 (1141)
63 KOG0964 Structural maintenance 95.9 4.3 9.3E-05 48.2 26.1 173 13-196 258-443 (1200)
64 PF09726 Macoilin: Transmembra 95.8 3.3 7.2E-05 48.1 25.2 77 24-100 422-498 (697)
65 PF12128 DUF3584: Protein of u 95.7 7.8 0.00017 47.9 43.5 32 396-427 962-994 (1201)
66 KOG0994 Extracellular matrix g 95.6 4 8.7E-05 49.2 24.5 125 61-190 1562-1687(1758)
67 PF05701 WEMBL: Weak chloropla 95.3 6.5 0.00014 44.2 37.3 22 18-39 128-149 (522)
68 KOG0980 Actin-binding protein 95.0 7.1 0.00015 46.0 23.9 101 13-120 396-496 (980)
69 PF13870 DUF4201: Domain of un 94.6 4.4 9.4E-05 38.8 20.3 114 1-114 1-115 (177)
70 PF15619 Lebercilin: Ciliary p 94.4 5.7 0.00012 39.1 22.7 44 61-104 67-110 (194)
71 PRK04863 mukB cell division pr 94.3 21 0.00045 45.2 38.5 167 8-179 302-485 (1486)
72 PRK09039 hypothetical protein; 94.2 8.7 0.00019 40.9 21.3 56 7-62 47-102 (343)
73 KOG0946 ER-Golgi vesicle-tethe 94.2 15 0.00032 43.1 26.3 37 152-188 801-837 (970)
74 PF01576 Myosin_tail_1: Myosin 94.1 0.014 3.1E-07 68.9 0.0 34 150-183 278-311 (859)
75 TIGR03185 DNA_S_dndD DNA sulfu 94.0 15 0.00032 42.4 34.4 44 40-83 208-251 (650)
76 PF05911 DUF869: Plant protein 93.7 5.5 0.00012 46.8 19.8 93 22-114 598-690 (769)
77 PF05483 SCP-1: Synaptonemal c 93.7 17 0.00037 42.0 37.3 268 40-308 348-637 (786)
78 COG3883 Uncharacterized protei 93.5 10 0.00023 39.0 24.8 76 26-104 37-112 (265)
79 PF10473 CENP-F_leu_zip: Leuci 93.4 6.9 0.00015 36.7 19.6 89 17-105 7-95 (140)
80 COG5185 HEC1 Protein involved 93.3 16 0.00034 40.6 25.0 137 61-212 294-430 (622)
81 PF08317 Spc7: Spc7 kinetochor 93.2 12 0.00026 39.4 20.1 9 34-42 156-164 (325)
82 smart00787 Spc7 Spc7 kinetocho 93.2 5.2 0.00011 42.2 17.2 41 15-55 153-193 (312)
83 PF11559 ADIP: Afadin- and alp 93.2 3.8 8.2E-05 38.2 14.6 85 19-103 30-114 (151)
84 PF10146 zf-C4H2: Zinc finger- 93.1 4.2 9.2E-05 41.1 15.7 76 37-112 28-103 (230)
85 COG3883 Uncharacterized protei 93.1 12 0.00026 38.6 23.2 72 40-111 37-108 (265)
86 smart00787 Spc7 Spc7 kinetocho 93.1 5.8 0.00013 41.8 17.3 46 21-66 152-197 (312)
87 PRK09039 hypothetical protein; 93.0 14 0.00031 39.3 22.1 20 362-381 303-322 (343)
88 PF15290 Syntaphilin: Golgi-lo 93.0 2.4 5.1E-05 43.8 13.7 82 7-88 69-150 (305)
89 PF12128 DUF3584: Protein of u 92.6 34 0.00074 42.4 43.4 19 412-430 1004-1022(1201)
90 PF15070 GOLGA2L5: Putative go 92.4 25 0.00054 40.5 27.1 36 134-169 207-242 (617)
91 COG1340 Uncharacterized archae 92.4 16 0.00035 38.2 31.8 95 15-109 8-102 (294)
92 PF11559 ADIP: Afadin- and alp 92.3 9.6 0.00021 35.4 16.4 64 40-103 44-107 (151)
93 PF09726 Macoilin: Transmembra 92.1 29 0.00063 40.6 27.0 56 45-100 457-512 (697)
94 PF12325 TMF_TATA_bd: TATA ele 92.0 7.9 0.00017 35.3 14.4 58 151-208 62-119 (120)
95 KOG0994 Extracellular matrix g 91.8 39 0.00085 41.4 29.4 33 259-291 1711-1743(1758)
96 PF04849 HAP1_N: HAP1 N-termin 91.7 20 0.00043 37.8 25.1 34 44-77 93-126 (306)
97 PF13851 GAS: Growth-arrest sp 91.7 15 0.00032 36.3 24.7 17 159-175 152-168 (201)
98 KOG4643 Uncharacterized coiled 91.6 38 0.00082 40.8 28.9 82 20-101 257-347 (1195)
99 COG0419 SbcC ATPase involved i 91.5 37 0.00081 40.7 39.0 32 458-492 855-886 (908)
100 PF10168 Nup88: Nuclear pore c 91.5 19 0.00041 42.2 20.4 78 43-120 560-637 (717)
101 PF04849 HAP1_N: HAP1 N-termin 91.4 5.6 0.00012 41.8 14.4 113 8-120 162-285 (306)
102 KOG0979 Structural maintenance 91.3 40 0.00087 40.6 24.5 53 61-113 254-306 (1072)
103 PF10146 zf-C4H2: Zinc finger- 91.2 4.3 9.3E-05 41.0 13.1 39 64-102 62-100 (230)
104 PF01576 Myosin_tail_1: Myosin 90.9 0.068 1.5E-06 63.2 0.0 30 10-39 191-220 (859)
105 TIGR01843 type_I_hlyD type I s 90.6 26 0.00056 37.2 23.0 43 74-116 142-184 (423)
106 KOG0962 DNA repair protein RAD 90.6 53 0.0012 40.8 31.6 57 143-204 941-997 (1294)
107 PF06818 Fez1: Fez1; InterPro 90.4 20 0.00043 35.6 17.5 99 4-102 8-106 (202)
108 PF04111 APG6: Autophagy prote 90.3 7.7 0.00017 40.8 14.6 12 394-405 290-301 (314)
109 PF05911 DUF869: Plant protein 90.2 29 0.00062 41.0 20.3 35 65-99 606-640 (769)
110 KOG0971 Microtubule-associated 90.0 49 0.0011 39.6 32.6 53 237-289 455-514 (1243)
111 KOG0612 Rho-associated, coiled 89.9 58 0.0013 40.1 33.3 8 359-366 852-859 (1317)
112 TIGR03185 DNA_S_dndD DNA sulfu 89.8 44 0.00094 38.6 32.4 64 156-219 390-455 (650)
113 PF09755 DUF2046: Uncharacteri 89.5 31 0.00067 36.4 25.5 58 309-366 198-255 (310)
114 PF07926 TPR_MLP1_2: TPR/MLP1/ 89.4 17 0.00037 33.3 18.4 89 12-100 2-90 (132)
115 PF11932 DUF3450: Protein of u 89.3 15 0.00032 37.2 15.3 76 16-91 24-99 (251)
116 PF04111 APG6: Autophagy prote 89.0 8.3 0.00018 40.6 13.6 6 15-20 18-23 (314)
117 KOG0977 Nuclear envelope prote 89.0 46 0.001 37.8 29.5 105 17-121 32-137 (546)
118 PF08614 ATG16: Autophagy prot 88.8 3.2 6.9E-05 40.5 9.7 96 25-120 72-167 (194)
119 KOG0971 Microtubule-associated 88.4 64 0.0014 38.7 39.7 38 247-284 493-530 (1243)
120 KOG0979 Structural maintenance 88.4 67 0.0014 38.9 29.7 66 28-93 630-695 (1072)
121 KOG0963 Transcription factor/C 88.4 53 0.0011 37.7 31.2 47 172-219 311-357 (629)
122 PF10186 Atg14: UV radiation r 88.3 31 0.00067 34.9 17.6 8 355-362 196-203 (302)
123 PF10498 IFT57: Intra-flagella 88.2 18 0.00038 39.0 15.6 105 4-112 212-316 (359)
124 PF15070 GOLGA2L5: Putative go 88.2 56 0.0012 37.7 27.0 42 24-65 26-67 (617)
125 PF10481 CENP-F_N: Cenp-F N-te 88.1 26 0.00057 36.3 15.8 77 24-100 15-91 (307)
126 PF07926 TPR_MLP1_2: TPR/MLP1/ 87.5 23 0.00049 32.5 16.2 45 45-89 56-100 (132)
127 PF05266 DUF724: Protein of un 87.0 25 0.00055 34.5 14.7 83 40-122 102-184 (190)
128 TIGR02680 conserved hypothetic 86.6 1E+02 0.0022 39.0 23.5 25 15-39 225-249 (1353)
129 PF09730 BicD: Microtubule-ass 86.6 62 0.0013 38.0 19.7 175 5-200 264-455 (717)
130 PRK10884 SH3 domain-containing 86.6 13 0.00028 37.0 12.6 21 13-33 93-113 (206)
131 PF09730 BicD: Microtubule-ass 86.2 77 0.0017 37.3 23.9 102 19-120 12-113 (717)
132 PF12329 TMF_DNA_bd: TATA elem 85.8 9 0.00019 31.9 9.4 68 25-92 3-70 (74)
133 PF13851 GAS: Growth-arrest sp 85.8 39 0.00084 33.4 20.7 20 170-189 149-168 (201)
134 PF10498 IFT57: Intra-flagella 85.6 27 0.00059 37.6 15.3 53 40-92 265-317 (359)
135 PF10168 Nup88: Nuclear pore c 85.6 83 0.0018 37.1 21.6 53 53-105 556-608 (717)
136 KOG0980 Actin-binding protein 85.6 88 0.0019 37.4 29.0 58 143-200 445-502 (980)
137 PF14662 CCDC155: Coiled-coil 85.5 39 0.00085 33.3 25.0 77 29-105 10-89 (193)
138 KOG1003 Actin filament-coating 85.5 40 0.00087 33.4 25.1 103 6-108 4-127 (205)
139 PF07106 TBPIP: Tat binding pr 85.5 13 0.00028 35.3 11.6 65 19-83 71-137 (169)
140 COG4026 Uncharacterized protei 84.7 11 0.00024 38.0 10.9 78 40-117 134-211 (290)
141 PF06160 EzrA: Septation ring 84.3 81 0.0018 35.9 31.5 51 7-57 102-152 (560)
142 COG4026 Uncharacterized protei 84.1 12 0.00026 37.7 10.8 74 25-98 133-206 (290)
143 COG2433 Uncharacterized conser 84.1 21 0.00046 40.7 14.0 18 97-114 474-491 (652)
144 PF02050 FliJ: Flagellar FliJ 84.0 26 0.00056 29.9 13.6 48 70-117 46-93 (123)
145 PRK10869 recombination and rep 83.8 85 0.0018 35.7 23.5 28 185-212 341-368 (553)
146 PF07889 DUF1664: Protein of u 83.2 22 0.00048 32.8 11.5 76 10-88 47-122 (126)
147 KOG0946 ER-Golgi vesicle-tethe 83.1 1.1E+02 0.0024 36.4 25.9 16 7-22 626-641 (970)
148 TIGR01843 type_I_hlyD type I s 83.0 68 0.0015 34.0 22.7 47 56-102 138-184 (423)
149 COG4372 Uncharacterized protei 83.0 76 0.0017 34.6 28.2 36 161-196 186-221 (499)
150 KOG4360 Uncharacterized coiled 82.9 73 0.0016 35.9 17.1 179 44-225 222-404 (596)
151 PF06008 Laminin_I: Laminin Do 82.9 58 0.0013 33.1 26.1 82 6-87 31-112 (264)
152 PF05557 MAD: Mitotic checkpoi 82.7 0.39 8.5E-06 55.8 0.0 27 483-509 687-714 (722)
153 PF11932 DUF3450: Protein of u 82.7 40 0.00088 34.0 14.5 74 19-92 20-93 (251)
154 KOG1029 Endocytic adaptor prot 82.6 1.1E+02 0.0024 36.2 32.9 105 172-276 473-581 (1118)
155 KOG0288 WD40 repeat protein Ti 82.5 82 0.0018 34.6 17.4 93 13-105 13-105 (459)
156 COG3352 FlaC Putative archaeal 81.8 13 0.00028 35.2 9.6 66 8-73 46-111 (157)
157 COG2433 Uncharacterized conser 81.8 31 0.00066 39.5 14.1 35 42-76 430-464 (652)
158 PF04012 PspA_IM30: PspA/IM30 81.6 56 0.0012 32.1 15.8 47 11-57 28-74 (221)
159 PRK10884 SH3 domain-containing 81.4 30 0.00064 34.5 12.6 29 85-113 134-162 (206)
160 PF05557 MAD: Mitotic checkpoi 81.3 6.1 0.00013 46.0 9.0 74 40-113 356-429 (722)
161 KOG4643 Uncharacterized coiled 81.2 1.4E+02 0.003 36.4 33.4 32 8-39 186-217 (1195)
162 PF00769 ERM: Ezrin/radixin/mo 81.1 67 0.0015 32.7 16.1 105 13-117 12-116 (246)
163 KOG4360 Uncharacterized coiled 80.4 48 0.001 37.3 14.7 59 43-101 207-265 (596)
164 PF05266 DUF724: Protein of un 80.4 62 0.0013 31.8 14.6 85 23-107 99-183 (190)
165 PRK11281 hypothetical protein; 80.1 1.3E+02 0.0027 37.4 19.6 21 488-508 695-716 (1113)
166 PF15290 Syntaphilin: Golgi-lo 80.0 57 0.0012 34.0 14.2 99 35-158 69-167 (305)
167 KOG1899 LAR transmembrane tyro 79.9 69 0.0015 36.9 15.9 86 41-130 104-189 (861)
168 KOG2273 Membrane coat complex 79.5 1.1E+02 0.0024 34.1 24.3 183 20-212 281-465 (503)
169 KOG1003 Actin filament-coating 79.4 69 0.0015 31.8 24.2 139 19-168 3-141 (205)
170 COG0419 SbcC ATPase involved i 79.4 1.5E+02 0.0033 35.7 37.8 27 470-496 818-846 (908)
171 PF07106 TBPIP: Tat binding pr 78.0 28 0.00061 33.0 11.0 62 27-88 72-135 (169)
172 KOG4302 Microtubule-associated 77.7 1.5E+02 0.0032 34.6 19.6 68 143-210 117-199 (660)
173 KOG0804 Cytoplasmic Zn-finger 77.5 63 0.0014 35.8 14.4 27 91-117 429-455 (493)
174 PF05384 DegS: Sensor protein 77.3 70 0.0015 30.7 16.7 48 10-57 24-71 (159)
175 PF04582 Reo_sigmaC: Reovirus 77.1 5 0.00011 42.5 5.9 102 8-109 51-152 (326)
176 PF12777 MT: Microtubule-bindi 77.0 11 0.00023 40.1 8.6 63 42-104 243-305 (344)
177 PF02403 Seryl_tRNA_N: Seryl-t 76.9 44 0.00096 29.1 11.1 24 83-106 74-97 (108)
178 PF10205 KLRAQ: Predicted coil 76.3 51 0.0011 29.4 11.1 68 39-106 3-70 (102)
179 PRK03947 prefoldin subunit alp 75.8 64 0.0014 29.5 14.0 26 81-106 99-124 (140)
180 PF14662 CCDC155: Coiled-coil 75.6 87 0.0019 31.0 22.1 38 74-111 93-130 (193)
181 PF13870 DUF4201: Domain of un 75.5 77 0.0017 30.2 19.9 34 143-176 84-117 (177)
182 TIGR03007 pepcterm_ChnLen poly 75.2 1.4E+02 0.003 33.0 21.5 23 184-206 354-376 (498)
183 TIGR03007 pepcterm_ChnLen poly 75.2 1.4E+02 0.003 33.0 18.7 62 8-69 163-232 (498)
184 PF09738 DUF2051: Double stran 74.2 62 0.0013 34.1 13.1 84 30-113 80-163 (302)
185 KOG4302 Microtubule-associated 74.2 1.4E+02 0.003 34.9 16.7 39 76-114 103-141 (660)
186 PF10481 CENP-F_N: Cenp-F N-te 74.0 1.2E+02 0.0026 31.7 14.8 25 408-432 271-295 (307)
187 COG4694 Uncharacterized protei 73.9 44 0.00096 38.0 12.3 89 12-101 384-477 (758)
188 PRK03947 prefoldin subunit alp 73.9 72 0.0016 29.2 14.0 35 73-107 98-132 (140)
189 KOG2264 Exostosin EXT1L [Signa 73.7 25 0.00054 39.9 10.4 47 49-95 94-140 (907)
190 PF06637 PV-1: PV-1 protein (P 73.6 1.4E+02 0.0031 32.5 32.9 60 272-343 356-423 (442)
191 PF00769 ERM: Ezrin/radixin/mo 73.3 1.1E+02 0.0024 31.1 16.4 105 10-114 16-120 (246)
192 COG4487 Uncharacterized protei 73.3 1.6E+02 0.0034 32.7 24.8 164 25-196 40-223 (438)
193 PF06818 Fez1: Fez1; InterPro 72.9 1.1E+02 0.0023 30.6 16.9 29 184-212 137-165 (202)
194 TIGR00634 recN DNA repair prot 72.5 1.8E+02 0.0038 33.1 24.2 29 184-212 345-373 (563)
195 PF08172 CASP_C: CASP C termin 72.5 45 0.00098 34.1 11.4 98 9-106 2-137 (248)
196 COG4942 Membrane-bound metallo 72.1 1.6E+02 0.0035 32.5 26.7 74 19-92 37-110 (420)
197 PF03148 Tektin: Tektin family 72.0 1.2E+02 0.0027 32.7 15.2 45 28-72 252-296 (384)
198 PF06810 Phage_GP20: Phage min 71.6 52 0.0011 31.2 10.9 61 26-86 5-68 (155)
199 PF12777 MT: Microtubule-bindi 71.2 25 0.00054 37.3 9.6 33 14-46 229-261 (344)
200 PF10234 Cluap1: Clusterin-ass 71.1 1.3E+02 0.0029 31.2 14.4 62 59-120 173-234 (267)
201 PF02050 FliJ: Flagellar FliJ 70.3 67 0.0015 27.3 14.8 86 18-103 3-93 (123)
202 PF01519 DUF16: Protein of unk 70.0 22 0.00047 31.6 7.2 63 16-78 33-97 (102)
203 COG3074 Uncharacterized protei 69.8 64 0.0014 26.9 10.4 66 37-102 7-72 (79)
204 KOG0239 Kinesin (KAR3 subfamil 69.8 1.4E+02 0.003 35.0 15.7 22 470-491 619-640 (670)
205 PF06785 UPF0242: Uncharacteri 69.5 1E+02 0.0022 33.0 13.1 78 22-99 87-164 (401)
206 PF15254 CCDC14: Coiled-coil d 69.2 2.5E+02 0.0054 33.4 21.3 21 19-39 352-372 (861)
207 PRK11281 hypothetical protein; 69.0 3E+02 0.0065 34.3 24.1 52 9-60 124-175 (1113)
208 PF09738 DUF2051: Double stran 68.8 1.1E+02 0.0025 32.2 13.6 88 19-106 76-163 (302)
209 PF05622 HOOK: HOOK protein; 68.5 1.6 3.5E-05 50.7 0.0 29 201-229 320-348 (713)
210 PF12795 MscS_porin: Mechanose 68.1 1.4E+02 0.003 30.0 20.7 88 27-114 38-137 (240)
211 PF05622 HOOK: HOOK protein; 68.0 1.7 3.7E-05 50.5 0.0 47 11-57 306-355 (713)
212 PRK02119 hypothetical protein; 67.5 40 0.00086 28.0 8.0 41 7-47 3-43 (73)
213 PF14915 CCDC144C: CCDC144C pr 67.3 1.7E+02 0.0037 30.9 30.9 177 37-220 52-228 (305)
214 PF04012 PspA_IM30: PspA/IM30 67.3 1.3E+02 0.0028 29.5 15.1 32 8-39 32-63 (221)
215 COG1730 GIM5 Predicted prefold 67.2 1.1E+02 0.0025 28.8 13.9 42 13-54 6-47 (145)
216 PF10805 DUF2730: Protein of u 67.0 53 0.0012 29.1 9.3 19 54-72 71-89 (106)
217 KOG0999 Microtubule-associated 66.8 2.4E+02 0.0052 32.3 27.7 26 80-105 104-129 (772)
218 TIGR01000 bacteriocin_acc bact 66.5 1.7E+02 0.0038 32.1 15.3 9 151-159 306-314 (457)
219 PF02994 Transposase_22: L1 tr 65.9 20 0.00044 38.6 7.6 17 284-300 288-304 (370)
220 KOG1962 B-cell receptor-associ 65.3 39 0.00086 33.9 8.9 59 48-106 151-209 (216)
221 PF06120 Phage_HK97_TLTM: Tail 64.7 1.9E+02 0.0042 30.5 15.7 64 16-81 44-107 (301)
222 KOG4593 Mitotic checkpoint pro 64.4 2.9E+02 0.0063 32.4 25.7 51 150-200 237-300 (716)
223 KOG2264 Exostosin EXT1L [Signa 64.2 52 0.0011 37.5 10.3 40 28-67 87-126 (907)
224 PF03962 Mnd1: Mnd1 family; I 64.0 1.4E+02 0.0031 29.1 12.5 27 13-39 69-95 (188)
225 KOG0804 Cytoplasmic Zn-finger 64.0 2.4E+02 0.0053 31.4 16.8 49 66-114 351-399 (493)
226 PRK15422 septal ring assembly 63.9 92 0.002 26.5 10.7 69 36-104 6-74 (79)
227 KOG0963 Transcription factor/C 63.7 2.8E+02 0.0061 32.1 31.4 27 143-169 178-204 (629)
228 PF13166 AAA_13: AAA domain 63.7 2.8E+02 0.0061 32.0 23.3 19 494-512 678-697 (712)
229 KOG0243 Kinesin-like protein [ 63.6 3.6E+02 0.0077 33.2 29.9 79 54-132 440-518 (1041)
230 PF10205 KLRAQ: Predicted coil 63.4 1.1E+02 0.0024 27.3 10.9 70 45-114 2-71 (102)
231 PF14197 Cep57_CLD_2: Centroso 63.2 82 0.0018 26.0 9.0 55 65-119 8-62 (69)
232 PRK10929 putative mechanosensi 63.1 3.8E+02 0.0083 33.4 24.9 29 8-36 104-132 (1109)
233 PF05278 PEARLI-4: Arabidopsis 62.7 1.8E+02 0.0039 30.3 13.3 14 20-33 149-162 (269)
234 PF12329 TMF_DNA_bd: TATA elem 62.6 90 0.0019 26.0 10.7 52 50-101 14-65 (74)
235 PF10267 Tmemb_cc2: Predicted 61.7 2.5E+02 0.0055 30.8 15.7 27 22-48 214-240 (395)
236 PF05278 PEARLI-4: Arabidopsis 61.6 2.1E+02 0.0045 29.8 14.5 41 71-111 195-235 (269)
237 PF08702 Fib_alpha: Fibrinogen 60.9 1.5E+02 0.0032 27.9 14.7 21 19-39 35-55 (146)
238 TIGR02231 conserved hypothetic 60.5 1.2E+02 0.0025 34.1 12.7 41 72-112 127-167 (525)
239 TIGR01005 eps_transp_fam exopo 60.4 3.4E+02 0.0073 31.8 21.4 74 33-106 193-267 (754)
240 PF04949 Transcrip_act: Transc 59.9 1.6E+02 0.0035 28.0 17.9 94 20-113 31-128 (159)
241 PF02403 Seryl_tRNA_N: Seryl-t 59.5 1.2E+02 0.0026 26.4 10.8 17 40-56 42-58 (108)
242 PF05008 V-SNARE: Vesicle tran 59.4 96 0.0021 25.3 9.0 51 45-95 22-73 (79)
243 PF14992 TMCO5: TMCO5 family 59.1 2.2E+02 0.0049 29.8 13.3 21 37-57 21-41 (280)
244 KOG0972 Huntingtin interacting 58.5 1.6E+02 0.0035 31.0 12.1 54 39-92 271-324 (384)
245 KOG0999 Microtubule-associated 58.5 3.4E+02 0.0073 31.2 21.0 24 10-33 47-70 (772)
246 PF09787 Golgin_A5: Golgin sub 58.4 3.1E+02 0.0067 30.8 21.4 12 356-367 456-467 (511)
247 KOG4657 Uncharacterized conser 58.3 2.2E+02 0.0047 29.0 15.5 66 38-103 48-113 (246)
248 PF09304 Cortex-I_coil: Cortex 58.0 1.4E+02 0.0031 26.8 14.6 7 76-82 65-71 (107)
249 PF02994 Transposase_22: L1 tr 56.8 31 0.00068 37.1 7.1 9 97-105 151-159 (370)
250 PF07889 DUF1664: Protein of u 56.4 1.7E+02 0.0036 27.1 13.4 50 40-89 60-109 (126)
251 PF06810 Phage_GP20: Phage min 56.3 1.1E+02 0.0023 29.1 9.8 17 145-161 118-134 (155)
252 PF06005 DUF904: Protein of un 55.0 1.2E+02 0.0027 25.2 11.2 11 90-100 53-63 (72)
253 PRK00409 recombination and DNA 54.2 3.5E+02 0.0076 32.3 15.7 42 337-386 732-773 (782)
254 PF03962 Mnd1: Mnd1 family; I 54.0 2.2E+02 0.0048 27.8 13.1 66 90-162 103-168 (188)
255 KOG4438 Centromere-associated 54.0 3.5E+02 0.0075 30.0 28.5 31 182-212 276-306 (446)
256 PF15456 Uds1: Up-regulated Du 53.9 1.8E+02 0.0039 26.7 12.7 28 29-57 24-51 (124)
257 PF10805 DUF2730: Protein of u 53.4 1.1E+02 0.0023 27.2 8.8 24 55-78 65-88 (106)
258 PF07035 Mic1: Colon cancer-as 53.4 35 0.00077 32.8 6.1 73 442-518 45-129 (167)
259 COG1730 GIM5 Predicted prefold 53.1 2E+02 0.0044 27.1 14.5 43 18-60 4-46 (145)
260 PF02183 HALZ: Homeobox associ 53.1 60 0.0013 24.6 6.1 38 33-70 4-41 (45)
261 PF13863 DUF4200: Domain of un 52.3 1.7E+02 0.0037 25.9 15.3 14 13-26 14-27 (126)
262 KOG1962 B-cell receptor-associ 52.0 68 0.0015 32.3 8.0 60 26-85 150-209 (216)
263 PF09789 DUF2353: Uncharacteri 51.3 3.3E+02 0.0072 29.0 16.8 42 38-79 69-110 (319)
264 PF05700 BCAS2: Breast carcino 50.9 2.1E+02 0.0045 28.6 11.4 32 44-75 139-170 (221)
265 KOG0962 DNA repair protein RAD 50.5 6.3E+02 0.014 32.0 35.0 29 185-213 407-435 (1294)
266 COG3352 FlaC Putative archaeal 50.1 1.3E+02 0.0028 28.8 9.0 29 40-68 71-99 (157)
267 KOG0972 Huntingtin interacting 49.9 2.1E+02 0.0046 30.2 11.3 103 9-121 223-325 (384)
268 COG4372 Uncharacterized protei 49.8 3.9E+02 0.0085 29.4 27.0 56 49-104 75-130 (499)
269 PF05529 Bap31: B-cell recepto 49.8 1.6E+02 0.0034 28.4 10.2 67 40-106 117-184 (192)
270 KOG0978 E3 ubiquitin ligase in 49.5 5.1E+02 0.011 30.6 33.0 17 179-195 434-450 (698)
271 PF06476 DUF1090: Protein of u 49.2 2E+02 0.0044 26.0 10.2 32 8-39 19-55 (115)
272 PF12761 End3: Actin cytoskele 49.1 1.6E+02 0.0035 29.2 10.0 86 17-102 93-193 (195)
273 PF04728 LPP: Lipoprotein leuc 48.9 1.4E+02 0.003 23.9 8.0 20 82-101 30-49 (56)
274 COG5139 Uncharacterized conser 48.8 38 0.00082 35.6 5.8 84 369-465 209-311 (397)
275 PF08647 BRE1: BRE1 E3 ubiquit 47.8 1.9E+02 0.004 25.1 13.2 64 37-100 6-69 (96)
276 PF05335 DUF745: Protein of un 47.7 2.9E+02 0.0062 27.2 16.6 50 67-116 114-163 (188)
277 TIGR01005 eps_transp_fam exopo 47.7 5.2E+02 0.011 30.3 23.4 33 14-46 188-220 (754)
278 PF14282 FlxA: FlxA-like prote 47.7 1.3E+02 0.0029 26.5 8.5 19 70-88 52-70 (106)
279 PF07851 TMPIT: TMPIT-like pro 47.5 2.7E+02 0.006 29.8 12.1 6 397-402 221-226 (330)
280 KOG3091 Nuclear pore complex, 47.3 4.7E+02 0.01 29.6 15.4 49 9-57 337-392 (508)
281 KOG4603 TBP-1 interacting prot 47.1 2.9E+02 0.0062 27.1 12.1 66 45-110 83-150 (201)
282 PF15254 CCDC14: Coiled-coil d 46.8 4.6E+02 0.01 31.3 14.4 49 9-57 423-471 (861)
283 PF04582 Reo_sigmaC: Reovirus 46.7 43 0.00094 35.6 6.0 93 25-117 54-146 (326)
284 KOG4809 Rab6 GTPase-interactin 46.3 5.1E+02 0.011 29.7 21.8 76 3-78 328-403 (654)
285 PRK09343 prefoldin subunit bet 46.3 2.3E+02 0.0049 25.7 13.7 11 29-39 23-33 (121)
286 KOG3647 Predicted coiled-coil 45.8 2.8E+02 0.006 29.0 11.3 80 31-110 102-181 (338)
287 PF05565 Sipho_Gp157: Siphovir 45.7 2.3E+02 0.0049 26.9 10.3 53 61-113 39-91 (162)
288 TIGR01069 mutS2 MutS2 family p 45.4 3.8E+02 0.0082 31.9 14.2 37 342-386 726-762 (771)
289 PRK10361 DNA recombination pro 45.2 5E+02 0.011 29.3 24.1 36 44-79 56-91 (475)
290 KOG2991 Splicing regulator [RN 44.9 3.8E+02 0.0083 27.9 13.1 66 49-114 237-302 (330)
291 TIGR02680 conserved hypothetic 44.8 7.7E+02 0.017 31.4 33.2 93 20-112 742-836 (1353)
292 PF06103 DUF948: Bacterial pro 44.6 1.9E+02 0.0041 24.3 10.5 21 31-51 30-50 (90)
293 COG4477 EzrA Negative regulato 44.6 5.3E+02 0.012 29.5 33.6 21 10-30 108-128 (570)
294 TIGR01069 mutS2 MutS2 family p 44.6 4.1E+02 0.0089 31.7 14.3 52 19-70 496-547 (771)
295 KOG0982 Centrosomal protein Nu 44.6 4.2E+02 0.0092 29.5 13.0 64 41-104 304-367 (502)
296 KOG1899 LAR transmembrane tyro 44.2 5.9E+02 0.013 29.8 15.6 49 20-68 111-159 (861)
297 TIGR03017 EpsF chain length de 44.0 4.5E+02 0.0097 28.4 19.8 170 5-182 170-367 (444)
298 PF15066 CAGE1: Cancer-associa 43.8 5.2E+02 0.011 29.1 23.9 32 263-294 476-507 (527)
299 TIGR03752 conj_TIGR03752 integ 43.8 2.8E+02 0.0061 31.1 11.9 33 37-69 62-94 (472)
300 KOG3433 Protein involved in me 43.7 3.3E+02 0.0073 26.9 12.3 6 34-39 88-93 (203)
301 PF14915 CCDC144C: CCDC144C pr 43.7 4.2E+02 0.0092 28.0 33.7 91 20-110 6-104 (305)
302 PF11180 DUF2968: Protein of u 43.4 3.4E+02 0.0074 26.9 14.0 89 19-107 97-185 (192)
303 TIGR03752 conj_TIGR03752 integ 43.4 2.8E+02 0.006 31.2 11.7 6 501-506 439-444 (472)
304 PRK09841 cryptic autophosphory 43.4 2.8E+02 0.006 32.6 12.6 33 14-46 261-293 (726)
305 PF04100 Vps53_N: Vps53-like, 43.1 4.2E+02 0.009 28.8 13.1 72 18-89 16-91 (383)
306 TIGR01010 BexC_CtrB_KpsE polys 43.0 3.3E+02 0.0071 28.8 12.2 18 40-57 176-193 (362)
307 PRK11519 tyrosine kinase; Prov 42.8 4.2E+02 0.0091 31.1 14.0 30 14-43 261-290 (719)
308 TIGR00634 recN DNA repair prot 42.6 5.5E+02 0.012 29.1 24.3 30 150-179 280-309 (563)
309 PF13094 CENP-Q: CENP-Q, a CEN 42.6 2.1E+02 0.0046 26.8 9.6 31 59-89 45-75 (160)
310 PRK00409 recombination and DNA 42.5 6.2E+02 0.014 30.2 15.4 13 393-405 746-758 (782)
311 PF07111 HCR: Alpha helical co 42.3 6.5E+02 0.014 29.8 31.3 66 20-85 162-227 (739)
312 TIGR02977 phageshock_pspA phag 42.1 3.6E+02 0.0077 26.7 14.6 43 15-57 33-75 (219)
313 KOG4593 Mitotic checkpoint pro 41.9 6.5E+02 0.014 29.7 26.3 41 143-183 489-529 (716)
314 PRK10803 tol-pal system protei 41.7 1.9E+02 0.004 29.7 9.7 41 61-101 60-100 (263)
315 TIGR03545 conserved hypothetic 41.5 2.7E+02 0.0058 31.9 11.7 18 415-432 517-534 (555)
316 PF08581 Tup_N: Tup N-terminal 41.3 2.2E+02 0.0048 24.1 11.9 22 25-46 2-23 (79)
317 PF14257 DUF4349: Domain of un 40.9 91 0.002 31.6 7.3 86 14-105 106-191 (262)
318 PF13094 CENP-Q: CENP-Q, a CEN 40.9 2.5E+02 0.0054 26.3 9.8 34 78-111 43-76 (160)
319 PRK05431 seryl-tRNA synthetase 40.7 2.7E+02 0.0058 30.6 11.3 23 410-432 291-313 (425)
320 PF15188 CCDC-167: Coiled-coil 40.7 1E+02 0.0022 26.7 6.3 23 7-29 6-28 (85)
321 PF14282 FlxA: FlxA-like prote 40.3 2.1E+02 0.0046 25.3 8.6 11 31-41 23-33 (106)
322 PF13805 Pil1: Eisosome compon 40.2 4.6E+02 0.0099 27.4 14.7 55 19-73 95-156 (271)
323 PF06103 DUF948: Bacterial pro 39.6 2.3E+02 0.005 23.8 10.6 54 54-107 32-85 (90)
324 PF14726 RTTN_N: Rotatin, an a 39.5 58 0.0012 28.7 4.8 46 440-485 28-73 (98)
325 TIGR02132 phaR_Bmeg polyhydrox 39.0 3.9E+02 0.0084 26.3 10.6 18 22-39 74-91 (189)
326 PF06657 Cep57_MT_bd: Centroso 38.9 1.8E+02 0.0038 24.6 7.5 33 25-57 15-47 (79)
327 PF06008 Laminin_I: Laminin Do 38.7 4.3E+02 0.0094 26.7 26.6 84 18-101 22-105 (264)
328 KOG4673 Transcription factor T 38.7 7.4E+02 0.016 29.4 30.9 32 165-196 478-509 (961)
329 PF10211 Ax_dynein_light: Axon 38.3 3.9E+02 0.0084 26.1 11.1 58 56-113 128-186 (189)
330 TIGR02894 DNA_bind_RsfA transc 38.2 2.7E+02 0.0059 26.8 9.4 19 53-71 123-141 (161)
331 PF10458 Val_tRNA-synt_C: Valy 38.2 1.7E+02 0.0038 23.4 7.1 20 38-57 8-27 (66)
332 PF05335 DUF745: Protein of un 38.1 4E+02 0.0087 26.2 16.8 80 43-122 69-148 (188)
333 COG3074 Uncharacterized protei 37.6 2.4E+02 0.0053 23.6 9.6 47 65-111 7-53 (79)
334 PHA03332 membrane glycoprotein 37.4 9E+02 0.02 30.1 15.1 59 22-80 886-948 (1328)
335 PF10234 Cluap1: Clusterin-ass 37.2 5E+02 0.011 27.0 17.7 96 59-179 166-261 (267)
336 PF05010 TACC: Transforming ac 37.1 4.4E+02 0.0095 26.3 27.0 89 22-113 11-99 (207)
337 PHA03011 hypothetical protein; 37.0 3E+02 0.0065 24.6 8.7 49 42-90 65-113 (120)
338 TIGR00998 8a0101 efflux pump m 36.9 4.9E+02 0.011 26.8 13.5 16 14-29 81-96 (334)
339 PF05103 DivIVA: DivIVA protei 36.7 21 0.00046 31.9 1.8 48 25-72 23-70 (131)
340 PF08657 DASH_Spc34: DASH comp 36.7 1.2E+02 0.0027 31.2 7.5 35 40-74 179-213 (259)
341 PF14712 Snapin_Pallidin: Snap 36.6 2.6E+02 0.0056 23.5 11.3 36 20-55 14-49 (92)
342 TIGR00414 serS seryl-tRNA synt 36.6 3.9E+02 0.0085 29.3 11.8 23 410-432 293-315 (418)
343 PHA03011 hypothetical protein; 36.2 2.8E+02 0.0062 24.8 8.4 52 32-83 62-113 (120)
344 TIGR00293 prefoldin, archaeal 36.0 3.1E+02 0.0068 24.3 10.0 35 75-109 85-119 (126)
345 PF09787 Golgin_A5: Golgin sub 35.9 6.8E+02 0.015 28.2 36.0 39 171-209 288-326 (511)
346 KOG4809 Rab6 GTPase-interactin 35.0 7.6E+02 0.016 28.5 25.0 25 350-374 612-636 (654)
347 KOG4603 TBP-1 interacting prot 34.8 4.5E+02 0.0098 25.8 13.8 36 56-91 80-115 (201)
348 smart00509 TFS2N Domain in the 34.5 75 0.0016 26.3 4.5 21 412-432 54-74 (75)
349 PF05008 V-SNARE: Vesicle tran 34.1 1.5E+02 0.0033 24.1 6.4 22 36-57 27-48 (79)
350 PF05010 TACC: Transforming ac 33.5 5E+02 0.011 25.9 27.5 20 175-194 172-191 (207)
351 PF08581 Tup_N: Tup N-terminal 33.4 3E+02 0.0065 23.3 12.2 50 43-92 6-55 (79)
352 PF15294 Leu_zip: Leucine zipp 33.3 5.9E+02 0.013 26.7 16.8 32 81-112 130-161 (278)
353 KOG4657 Uncharacterized conser 33.1 5.5E+02 0.012 26.2 16.4 11 93-103 89-99 (246)
354 PF10779 XhlA: Haemolysin XhlA 33.1 2.4E+02 0.0053 23.0 7.3 27 14-40 7-33 (71)
355 PRK10246 exonuclease subunit S 32.7 1E+03 0.022 29.3 28.0 212 14-225 617-879 (1047)
356 PRK15422 septal ring assembly 32.6 3.2E+02 0.0069 23.4 9.6 40 64-103 6-45 (79)
357 COG5293 Predicted ATPase [Gene 32.5 7.8E+02 0.017 27.8 14.8 27 41-67 379-405 (591)
358 KOG2010 Double stranded RNA bi 32.4 3.5E+02 0.0077 29.0 9.9 78 15-92 106-198 (405)
359 PF10212 TTKRSYEDQ: Predicted 32.3 8.1E+02 0.017 28.0 15.3 19 96-114 486-504 (518)
360 PRK13729 conjugal transfer pil 32.1 1.8E+02 0.0039 32.6 8.2 21 361-381 235-255 (475)
361 PF13166 AAA_13: AAA domain 32.0 8.4E+02 0.018 28.1 23.6 13 99-111 372-384 (712)
362 PLN02678 seryl-tRNA synthetase 32.0 2.9E+02 0.0063 30.8 9.9 18 412-429 359-376 (448)
363 PF04645 DUF603: Protein of un 32.0 5E+02 0.011 25.4 12.1 23 70-92 106-128 (181)
364 TIGR00414 serS seryl-tRNA synt 31.9 5.7E+02 0.012 28.0 12.1 31 80-110 73-103 (418)
365 PF13747 DUF4164: Domain of un 31.3 3.4E+02 0.0074 23.4 11.9 19 5-23 3-21 (89)
366 PLN02320 seryl-tRNA synthetase 31.1 5.1E+02 0.011 29.4 11.6 20 413-432 357-376 (502)
367 PF05791 Bacillus_HBL: Bacillu 31.1 3E+02 0.0066 26.6 8.8 18 15-32 68-85 (184)
368 COG3096 MukB Uncharacterized p 31.0 1E+03 0.022 28.7 15.2 104 11-114 989-1097(1480)
369 PRK05431 seryl-tRNA synthetase 30.7 3.9E+02 0.0084 29.4 10.6 28 81-108 71-98 (425)
370 cd00183 TFIIS_I N-terminal dom 30.7 96 0.0021 25.6 4.6 20 412-431 56-75 (76)
371 PF01540 Lipoprotein_7: Adhesi 30.6 6.5E+02 0.014 26.4 21.4 69 46-114 88-156 (353)
372 PF06705 SF-assemblin: SF-asse 30.4 5.7E+02 0.012 25.7 20.5 157 2-160 55-214 (247)
373 TIGR02895 spore_sigI RNA polym 30.3 4.6E+02 0.01 26.2 10.2 134 370-511 49-187 (218)
374 KOG0978 E3 ubiquitin ligase in 30.3 9.8E+02 0.021 28.3 27.9 97 88-190 452-550 (698)
375 PF11570 E2R135: Coiled-coil r 30.1 4.6E+02 0.01 24.5 13.8 102 9-110 4-118 (136)
376 PRK11020 hypothetical protein; 30.0 2.7E+02 0.0059 25.4 7.5 21 19-39 4-24 (118)
377 KOG3850 Predicted membrane pro 29.9 7.9E+02 0.017 27.1 14.2 29 22-50 262-290 (455)
378 PLN02678 seryl-tRNA synthetase 29.7 3.8E+02 0.0083 29.8 10.3 29 80-108 75-103 (448)
379 PF15397 DUF4618: Domain of un 29.6 6.5E+02 0.014 26.1 22.7 44 14-60 64-107 (258)
380 KOG2150 CCR4-NOT transcription 29.5 7.9E+02 0.017 28.3 12.6 83 134-220 57-143 (575)
381 PF00790 VHS: VHS domain; Int 29.1 1.3E+02 0.0027 27.6 5.6 21 416-436 105-125 (140)
382 PRK09841 cryptic autophosphory 29.0 5.4E+02 0.012 30.2 12.0 40 25-64 258-297 (726)
383 PRK03598 putative efflux pump 28.9 6.2E+02 0.013 26.2 11.4 96 4-101 105-203 (331)
384 PRK15396 murein lipoprotein; P 28.5 3.4E+02 0.0075 23.0 7.5 36 66-101 36-71 (78)
385 PF13874 Nup54: Nucleoporin co 28.3 4.5E+02 0.0098 24.2 9.1 27 13-39 37-63 (141)
386 TIGR01010 BexC_CtrB_KpsE polys 27.8 7.4E+02 0.016 26.1 14.4 21 103-123 277-297 (362)
387 PF04380 BMFP: Membrane fusoge 27.7 3.7E+02 0.008 22.5 8.3 36 1-39 1-36 (79)
388 PRK14127 cell division protein 27.7 2.3E+02 0.0049 25.6 6.6 27 41-67 37-63 (109)
389 PF06632 XRCC4: DNA double-str 27.5 8E+02 0.017 26.4 13.1 8 98-105 195-202 (342)
390 PF14817 HAUS5: HAUS augmin-li 27.0 1E+03 0.022 27.8 13.4 35 396-430 503-537 (632)
391 PF03904 DUF334: Domain of unk 27.0 6.9E+02 0.015 25.5 15.2 56 17-74 35-90 (230)
392 KOG4460 Nuclear pore complex, 26.8 1E+03 0.022 27.5 16.7 157 44-202 584-740 (741)
393 PF04129 Vps52: Vps52 / Sac2 f 26.6 8.9E+02 0.019 27.2 12.7 53 36-88 16-68 (508)
394 KOG2391 Vacuolar sorting prote 26.4 4E+02 0.0087 28.8 9.1 21 154-174 321-341 (365)
395 KOG0243 Kinesin-like protein [ 26.3 1.3E+03 0.029 28.6 35.8 109 12-120 447-562 (1041)
396 KOG2010 Double stranded RNA bi 26.0 3.3E+02 0.0072 29.2 8.4 63 12-74 135-201 (405)
397 PF14712 Snapin_Pallidin: Snap 25.9 4E+02 0.0086 22.4 12.0 25 81-105 62-86 (92)
398 PF01519 DUF16: Protein of unk 25.8 4.9E+02 0.011 23.3 8.6 50 257-306 52-101 (102)
399 KOG2991 Splicing regulator [RN 25.8 7.8E+02 0.017 25.7 21.6 59 140-198 240-298 (330)
400 PLN02372 violaxanthin de-epoxi 25.7 9.5E+02 0.021 26.7 12.4 19 105-123 433-451 (455)
401 cd03561 VHS VHS domain family; 25.6 4.7E+02 0.01 23.6 8.7 25 410-434 93-117 (133)
402 PRK04051 rps4p 30S ribosomal p 25.5 2.3E+02 0.0049 27.7 6.7 80 413-499 48-128 (177)
403 PF00804 Syntaxin: Syntaxin; 25.5 3.9E+02 0.0084 22.1 10.8 30 10-39 4-33 (103)
404 PRK14011 prefoldin subunit alp 25.4 5.7E+02 0.012 24.0 13.5 25 15-39 5-29 (144)
405 PF10392 COG5: Golgi transport 25.3 5.2E+02 0.011 23.5 13.7 84 18-105 31-115 (132)
406 PF06120 Phage_HK97_TLTM: Tail 25.3 8.3E+02 0.018 25.9 16.5 50 9-58 51-105 (301)
407 KOG0249 LAR-interacting protei 25.1 9.8E+02 0.021 28.6 12.5 8 477-484 768-775 (916)
408 PF10212 TTKRSYEDQ: Predicted 24.7 1.1E+03 0.023 27.0 20.1 97 80-176 417-513 (518)
409 TIGR03319 YmdA_YtgF conserved 24.7 1.1E+03 0.023 26.8 20.6 148 23-187 21-168 (514)
410 PRK10698 phage shock protein P 24.1 7.3E+02 0.016 24.8 14.6 36 20-55 38-73 (222)
411 KOG2391 Vacuolar sorting prote 23.9 6.3E+02 0.014 27.3 10.0 9 74-82 265-273 (365)
412 PF05531 NPV_P10: Nucleopolyhe 23.8 3.8E+02 0.0083 22.7 6.8 21 23-43 7-27 (75)
413 PF13874 Nup54: Nucleoporin co 23.6 5.4E+02 0.012 23.7 8.7 44 7-50 45-88 (141)
414 KOG1793 Uncharacterized conser 23.4 2.1E+02 0.0045 31.4 6.5 79 328-432 194-291 (417)
415 COG3206 GumC Uncharacterized p 23.3 9.2E+02 0.02 26.4 11.9 16 102-117 371-386 (458)
416 COG1382 GimC Prefoldin, chaper 23.3 5.9E+02 0.013 23.4 12.6 8 45-52 31-38 (119)
417 PF10267 Tmemb_cc2: Predicted 23.2 1E+03 0.022 26.2 16.0 26 15-40 214-239 (395)
418 PF09789 DUF2353: Uncharacteri 23.1 9.4E+02 0.02 25.7 20.1 16 391-406 274-289 (319)
419 PF08711 Med26: TFIIS helical 22.8 83 0.0018 23.9 2.6 21 411-431 32-52 (53)
420 PF08172 CASP_C: CASP C termin 22.8 8.3E+02 0.018 25.0 12.0 47 67-113 84-130 (248)
421 PF07989 Microtub_assoc: Micro 22.6 4.6E+02 0.01 21.9 9.8 27 31-57 4-30 (75)
422 TIGR01018 rpsD_arch ribosomal 22.4 2.7E+02 0.0058 26.8 6.5 60 440-500 69-130 (162)
423 COG5283 Phage-related tail pro 22.4 1.6E+03 0.035 28.3 15.1 115 9-123 60-174 (1213)
424 PF10046 BLOC1_2: Biogenesis o 22.4 5.2E+02 0.011 22.4 12.8 49 18-66 12-60 (99)
425 PRK13729 conjugal transfer pil 22.2 3.7E+02 0.0079 30.3 8.3 46 43-88 71-116 (475)
426 PF10046 BLOC1_2: Biogenesis o 22.2 5.2E+02 0.011 22.4 13.5 43 13-55 14-56 (99)
427 TIGR03545 conserved hypothetic 22.0 7.9E+02 0.017 28.2 11.2 11 170-180 261-271 (555)
428 PF10458 Val_tRNA-synt_C: Valy 22.0 4.2E+02 0.0091 21.2 8.2 16 23-38 7-22 (66)
429 COG0216 PrfA Protein chain rel 21.9 1E+03 0.023 25.8 11.9 35 22-56 9-48 (363)
430 PF05103 DivIVA: DivIVA protei 21.8 65 0.0014 28.7 2.2 37 31-67 22-58 (131)
431 PF12761 End3: Actin cytoskele 21.8 8E+02 0.017 24.4 11.3 20 46-65 101-120 (195)
432 PF15456 Uds1: Up-regulated Du 21.8 6.3E+02 0.014 23.2 10.3 26 92-117 76-101 (124)
433 PF13863 DUF4200: Domain of un 21.4 5.7E+02 0.012 22.5 16.0 41 69-109 53-93 (126)
434 PF14257 DUF4349: Domain of un 21.4 3.7E+02 0.0081 27.1 7.8 57 31-87 129-187 (262)
435 PF15397 DUF4618: Domain of un 21.4 9.3E+02 0.02 25.0 28.8 71 34-104 38-109 (258)
436 PRK05771 V-type ATP synthase s 21.3 1.3E+03 0.028 26.6 14.1 30 28-57 94-123 (646)
437 PF06785 UPF0242: Uncharacteri 21.2 1.1E+03 0.023 25.6 18.0 146 17-173 68-213 (401)
438 PRK00846 hypothetical protein; 21.1 5.1E+02 0.011 21.9 8.7 60 9-68 2-61 (77)
439 PF08826 DMPK_coil: DMPK coile 21.1 4.5E+02 0.0098 21.3 9.9 61 31-91 1-61 (61)
440 PF07439 DUF1515: Protein of u 21.0 6.3E+02 0.014 22.9 8.0 59 10-68 5-67 (112)
441 PRK10869 recombination and rep 20.8 1.3E+03 0.027 26.3 24.4 205 8-214 146-370 (553)
442 TIGR00293 prefoldin, archaeal 20.6 5E+02 0.011 23.0 7.7 92 8-100 1-124 (126)
443 PF07544 Med9: RNA polymerase 20.5 4.4E+02 0.0096 22.2 6.8 56 51-106 24-82 (83)
444 PRK06771 hypothetical protein; 20.4 1E+02 0.0022 27.1 2.9 41 478-518 42-86 (93)
445 PF05791 Bacillus_HBL: Bacillu 20.1 6.7E+02 0.014 24.2 8.9 72 16-87 106-181 (184)
446 PF08657 DASH_Spc34: DASH comp 20.1 3.9E+02 0.0085 27.6 7.6 72 38-109 177-258 (259)
447 PRK14127 cell division protein 20.1 4.1E+02 0.0089 23.9 6.8 42 23-64 26-67 (109)
No 1
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=100.00 E-value=6.4e-63 Score=502.97 Aligned_cols=204 Identities=38% Similarity=0.588 Sum_probs=193.4
Q ss_pred CCcchhhHHHHHhhhCChHHHHHHHHHhhcchhhhHHhHHHHhhhCCCchhHHHHHhcccCCCCCCCCCCcchhhHhHHH
Q 048095 318 LTDNEETRLLSLQSMNNGRSLQLILNQHLQKHDLIFGQISQTLTKACDPALLVLDAMQGFYPPHSRKGDMEFDVSIIKRT 397 (535)
Q Consensus 318 ~~~~~~~~L~~lC~~MD~~gL~~fv~~~~k~~~~lr~Ev~~AL~~A~DPAkLVLdai~~f~~~~~~~~~~~~~~~~~r~~ 397 (535)
.++.++++|.++|++|||+||++||++|+++++++|+|+|+||++|||||+||||||+|||+++++. ++++++.++||+
T Consensus 7 ~~~~~~~~L~~lC~~MD~~gL~~fv~~~~k~~~~lr~Ev~~AL~~A~DPAkLVLdai~~f~~~~~~~-~~~~~~~~~r~~ 85 (290)
T PF07899_consen 7 VEVKPRPELKSLCEKMDGKGLRKFVSENRKELASLREEVPAALRCAPDPAKLVLDAIEGFYPPGSKN-KKDSKLVDVRRA 85 (290)
T ss_pred CCcchHHHHHHHHHHCCHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCChHHHHHHHHHcccCCcccc-ccCcchhhHHHH
Confidence 3456899999999999999999999999999999999999999999999999999999999998765 556678899999
Q ss_pred HHHHHhhhhhcCCCCChhHHHHHHHHHHHHHHhc-cccCCChHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhhhhhhhH
Q 048095 398 CILLLEQLSNIAPDINPQVRDEAMKMAGEWKKKM-GVIGENSLEVLGFLHLLAAYRLAPAFDGNELESLLDIVAHYRQTA 476 (535)
Q Consensus 398 CilLLE~L~~~~p~i~~~vkeeA~~lA~~WK~~i-~~~~~~~lea~gFL~lla~fgi~s~Fd~del~~Lv~~va~~~~~~ 476 (535)
||+|||+|+.++|.++|+|+++|+++|.+||++| +.+++++++|||||||||+|||+++||.|||++||.+|++|+|||
T Consensus 86 cilLLE~L~~~~~~is~~vke~A~~lA~~WK~~l~~~~~~~~lea~gFL~lla~fgi~s~Fd~del~~Lv~~va~~~~a~ 165 (290)
T PF07899_consen 86 CILLLEQLMRISPEISPEVKEEAKKLAEEWKSKLDGVNNENSLEALGFLQLLAAFGIVSEFDEDELLKLVVSVARRKQAP 165 (290)
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcchHhhH
Confidence 9999999999999999999999999999999999 777789999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcccccchHHHhhhcC-chhhhhhhhhc------CchhHHhH-HhHh
Q 048095 477 KLRQSLGFADKVTVVPWSSIGMD-QAENSRMNHGI------GPAVFREQ-LQLQ 522 (535)
Q Consensus 477 ~L~~sLGL~~K~~diV~~LI~~g-qieAv~~~~~f------~p~~ll~~-~~~~ 522 (535)
+||++|||++||||||++||++| ||+||+|||+| +|+|||+. ++.+
T Consensus 166 ~L~~sLgl~~k~~d~V~~LI~~g~~ieAv~fi~~f~L~dkfpPv~lLk~yl~~~ 219 (290)
T PF07899_consen 166 ELCRSLGLSDKMPDIVEKLIKKGKQIEAVRFIYAFGLVDKFPPVPLLKSYLEDS 219 (290)
T ss_pred HHHHHcCchhhhHHHHHHHHHCCCccchHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999 99999999975 69999999 6643
No 2
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.95 E-value=4.2e-06 Score=99.32 Aligned_cols=95 Identities=25% Similarity=0.227 Sum_probs=59.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHH------HHHHHHHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHH
Q 048095 8 IRGFNLKLQCKERQLRFLEKRIGESKGELALV------QKEIEECNSELWCKEKELGL-----VQKRIRGCNGELQSKQG 76 (535)
Q Consensus 8 ~~~~~~KL~~te~dLerved~i~ElEkqle~L------aek~~Elk~EL~~LE~eLee-----LK~eIeE~e~eIe~~qk 76 (535)
+..+-.+++.|..+|.|+.|++.++..++..| +.+|.++..++..++..+.. +...+......+..+..
T Consensus 167 ~~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~ 246 (1179)
T TIGR02168 167 ISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQE 246 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677899999999999999999999999988 55677777777777665522 23334444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 77 ELALVEKEIEESNSELQSKEIELGLL 102 (535)
Q Consensus 77 eIe~le~eIee~e~El~~~eeEL~~l 102 (535)
.+..+..++...+.++.....++..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~l 272 (1179)
T TIGR02168 247 ELKEAEEELEELTAELQELEEKLEEL 272 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433333333333333
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.95 E-value=5e-06 Score=99.02 Aligned_cols=101 Identities=20% Similarity=0.177 Sum_probs=61.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHH------HHHHHHHHHHHHHHHHHHH------------HHHHHHHHhHH
Q 048095 8 IRGFNLKLQCKERQLRFLEKRIGESKGELALV------QKEIEECNSELWCKEKELG------------LVQKRIRGCNG 69 (535)
Q Consensus 8 ~~~~~~KL~~te~dLerved~i~ElEkqle~L------aek~~Elk~EL~~LE~eLe------------eLK~eIeE~e~ 69 (535)
+..|..++..+..+|.++.+.+.++..++..+ +.+|.+...++..++..+. .+...+.....
T Consensus 165 ~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (1164)
T TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIER 244 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999998888887 4445555555556655542 22334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048095 70 ELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGE 108 (535)
Q Consensus 70 eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E 108 (535)
++...+..+..+..++...+.++.....++..++..++.
T Consensus 245 ~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 283 (1164)
T TIGR02169 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD 283 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444444444444444444
No 4
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.87 E-value=2e-05 Score=95.22 Aligned_cols=92 Identities=26% Similarity=0.303 Sum_probs=60.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHH------HHHHHHHHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHHH
Q 048095 8 IRGFNLKLQCKERQLRFLEKRIGESKGELALV------QKEIEECNSELWCKEKEL-----GLVQKRIRGCNGELQSKQG 76 (535)
Q Consensus 8 ~~~~~~KL~~te~dLerved~i~ElEkqle~L------aek~~Elk~EL~~LE~eL-----eeLK~eIeE~e~eIe~~qk 76 (535)
.+.-..+|+.|..+|+++.+.+.+++.+++.| +.+|..+..++..++..+ ..++.++..+...+...+.
T Consensus 174 ~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 253 (1163)
T COG1196 174 KEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEE 253 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556799999999999999999999999999 677888888888887776 3334444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048095 77 ELALVEKEIEESNSELQSKEIEL 99 (535)
Q Consensus 77 eIe~le~eIee~e~El~~~eeEL 99 (535)
.+..+...+.....++.....++
T Consensus 254 ~~~~~~~~~~~~~~~i~~~~~~~ 276 (1163)
T COG1196 254 ELEELQEELEEAEKEIEELKSEL 276 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333333333333333
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.72 E-value=0.0001 Score=87.97 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=16.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHH
Q 048095 8 IRGFNLKLQCKERQLRFLEKRIGESKGE 35 (535)
Q Consensus 8 ~~~~~~KL~~te~dLerved~i~ElEkq 35 (535)
+.....+|+.+...+.++.+.+.++..+
T Consensus 172 ~~~~~~~l~~~~~~l~el~~~~~~L~~q 199 (1164)
T TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQ 199 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666654433
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.64 E-value=0.00016 Score=85.97 Aligned_cols=99 Identities=28% Similarity=0.344 Sum_probs=42.7
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 048095 7 EIRGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIE 86 (535)
Q Consensus 7 ~~~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIe 86 (535)
+|......++..+..+...+..+.++..++..+...+.++..++..+...+..+...+..+...+...+..+..+..++.
T Consensus 671 ~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~ 750 (1179)
T TIGR02168 671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA 750 (1179)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444443
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 048095 87 ESNSELQSKEIELGLLQKR 105 (535)
Q Consensus 87 e~e~El~~~eeEL~~lqk~ 105 (535)
.++.++.....++..+...
T Consensus 751 ~~~~~~~~~~~~~~~~~~~ 769 (1179)
T TIGR02168 751 QLSKELTELEAEIEELEER 769 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 7
>PRK02224 chromosome segregation protein; Provisional
Probab=98.45 E-value=0.001 Score=77.98 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 18 KERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKEL 57 (535)
Q Consensus 18 te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eL 57 (535)
.+..+..+...+.++.+++..+...+.....++..++.++
T Consensus 354 le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el 393 (880)
T PRK02224 354 LEERAEELREEAAELESELEEAREAVEDRREEIEELEEEI 393 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 8
>PRK01156 chromosome segregation protein; Provisional
Probab=98.42 E-value=0.0055 Score=72.23 Aligned_cols=19 Identities=5% Similarity=0.146 Sum_probs=9.0
Q ss_pred HHHhhhCChHHHHHHHHHh
Q 048095 327 LSLQSMNNGRSLQLILNQH 345 (535)
Q Consensus 327 ~~lC~~MD~~gL~~fv~~~ 345 (535)
..+...++..|+..++..+
T Consensus 739 ~~~r~~l~k~~~~~~I~~~ 757 (895)
T PRK01156 739 KRLREAFDKSGVPAMIRKS 757 (895)
T ss_pred HHHHHHhhhccchHHHHHH
Confidence 3344455555554444433
No 9
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.41 E-value=0.0014 Score=76.82 Aligned_cols=341 Identities=15% Similarity=0.197 Sum_probs=176.3
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhHHH-----HHHHHHHHHHHH
Q 048095 14 KLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELG------LVQKRIRGCNGE-----LQSKQGELALVE 82 (535)
Q Consensus 14 KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLe------eLK~eIeE~e~e-----Ie~~qkeIe~le 82 (535)
.|++...++.++-+.+..-...+....+.+..+.+++.+.+..+. .++..+..++.+ +-..+++++..+
T Consensus 208 ~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~ 287 (1074)
T KOG0250|consen 208 QLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQE 287 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555554443 334444444443 345667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhHHHHHhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHH
Q 048095 83 KEIEESNSELQSKEIELGLLQKRVGECNCELECKQQQLGLAQSEEDLLKNSLKNSIEHWSQKLNLTKEELSLLQKSIREC 162 (535)
Q Consensus 83 ~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~~~~~~~~~~~~l~~~~~k~~v~~~~~~~~~~~~eL~~~~k~i~e~ 162 (535)
..|...+.........++..+..+++....+.+++.+.+..+.+-.- .+-.++..-+++.....+-..+.-.+.++
T Consensus 288 ~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~----~d~Ei~~~r~~~~~~~re~~~~~~~~~~~ 363 (1074)
T KOG0250|consen 288 EEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDA----QDEEIEEARKDLDDLRREVNDLKEEIREI 363 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888888888888887777777666644333221 22223344466666667777777778888
Q ss_pred HhhhhHHHHHHHHHHHHHHHhhHHH-hHHHhhhhhHHHHHHHHHHHhhhHHHHHHHHHhhhcccchhhhhhhhhhhhhcC
Q 048095 163 KGELDSKERQLAVVQKRIGECNNEL-QLKENELNLVKTVVEHCLQKLNLKKEELSLLQKSNGEWNGQLECGERQLELRLE 241 (535)
Q Consensus 163 ~~EL~~Kek~le~~~k~~~~~~~~l-~~k~k~l~~~~~~~~~~~kele~k~~~~~~~~~~~~~~~~~~e~~e~~~~~~~e 241 (535)
+.......+.++.+.+.|+...+++ ++-..++..+...+ ++|..++..+.+.+.+.......+.
T Consensus 364 ~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~--------------~~L~~evek~e~~~~~L~~e~~~~~- 428 (1074)
T KOG0250|consen 364 ENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKL--------------EQLKKEVEKLEEQINSLREELNEVK- 428 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 8888888888888888887777776 33333333333333 3333333333222211111111000
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCC--
Q 048095 242 PESGIKDCSQQIELKEKKLRQIQSSIEECEKELAIKERHISDYEEKLKAKEKLYDEIKKSIKELESAKKELEQPKSLT-- 319 (535)
Q Consensus 242 ~~s~~~~~~~~~~~kek~~~~~~~~~e~~~kel~~ke~~i~~~e~el~~~~k~~~~~~k~~ke~el~ekq~e~~~~~~-- 319 (535)
.+++.-..+.+.-+..+.-..++++-...++....++=.++-.-|- ..+..-+.+++-+..++..|-.-|
T Consensus 429 --~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG------~~m~~lL~~I~r~~~~f~~~P~GPlG 500 (1074)
T KOG0250|consen 429 --EKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFG------PNMPQLLRAIERRKRRFQTPPKGPLG 500 (1074)
T ss_pred --HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcc------hhhHHHHHHHHHHHhcCCCCCCCCcc
Confidence 0111111222222223333344444444444433333222222211 012222334444444433322222
Q ss_pred ---cchhhHHHHHhhhCChHHHHHHHHHhhcchhhhHHhHHHHhhhCCCchhHHHHHhcccCCCC
Q 048095 320 ---DNEETRLLSLQSMNNGRSLQLILNQHLQKHDLIFGQISQTLTKACDPALLVLDAMQGFYPPH 381 (535)
Q Consensus 320 ---~~~~~~L~~lC~~MD~~gL~~fv~~~~k~~~~lr~Ev~~AL~~A~DPAkLVLdai~~f~~~~ 381 (535)
.=+.+....+-+..=|..|..||+.+..|...||+=+-.+--.+-.|.-.|--....-|+.+
T Consensus 501 ~~Vtl~~~KWa~aIE~~L~n~lnaFiv~sh~D~~~Lr~i~~~~~~~~~~ptIvvs~~~~~~y~~~ 565 (1074)
T KOG0250|consen 501 KYVTLKEPKWALAIERCLGNLLNAFIVTSHKDARILRAIMRRLKIPGNRPTIVVSSFTPFDYSVG 565 (1074)
T ss_pred ceeEecCcHHHHHHHHHHHHhhhhheeCCHhhHHHHHHHHHHcCCCCCCCcEEEecCCccccccc
Confidence 01234555566777788899999998888888876444443333345444433333335444
No 10
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.37 E-value=0.0026 Score=77.18 Aligned_cols=23 Identities=43% Similarity=0.748 Sum_probs=13.2
Q ss_pred CCChHHHHHHHHHHHHhcCCCCC
Q 048095 435 GENSLEVLGFLHLLAAYRLAPAF 457 (535)
Q Consensus 435 ~~~~lea~gFL~lla~fgi~s~F 457 (535)
|+-++-|++||.=+--|.=+|=+
T Consensus 1070 GEKsLtAlAllFAi~~~~PaPf~ 1092 (1163)
T COG1196 1070 GEKSLTALALLFAIQKYRPAPFY 1092 (1163)
T ss_pred cHHHHHHHHHHHHHHhhCCCCee
Confidence 44567777776655555544443
No 11
>PRK01156 chromosome segregation protein; Provisional
Probab=98.29 E-value=0.0045 Score=72.98 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHH
Q 048095 249 CSQQIELKEKKLRQIQSSIEECEK 272 (535)
Q Consensus 249 ~~~~~~~kek~~~~~~~~~e~~~k 272 (535)
...+|...++++....+.++...+
T Consensus 474 ~~~~i~~l~~~i~~l~~~~~~l~~ 497 (895)
T PRK01156 474 YNEKKSRLEEKIREIEIEVKDIDE 497 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433333
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.20 E-value=0.0039 Score=76.53 Aligned_cols=37 Identities=30% Similarity=0.306 Sum_probs=23.3
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 048095 7 EIRGFNLKLQCKERQLRFLEKRIGESKGELALVQKEI 43 (535)
Q Consensus 7 ~~~~~~~KL~~te~dLerved~i~ElEkqle~Laek~ 43 (535)
+|..+..++.+++.++..+.+.+.+++..+..+....
T Consensus 745 eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~ 781 (1311)
T TIGR00606 745 EIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEE 781 (1311)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4555666666666666666666666666666664444
No 13
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.15 E-value=0.006 Score=74.98 Aligned_cols=119 Identities=12% Similarity=0.164 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhHH
Q 048095 48 SELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQQQLGLAQSEE 127 (535)
Q Consensus 48 ~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~~~~~~~~~~~ 127 (535)
.++..++..+..+...+.....++......+..+...++.+++ +......+..+..++..+.+.++..+.++....+.
T Consensus 744 ~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~es-L~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~- 821 (1311)
T TIGR00606 744 KEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKV-CLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLD- 821 (1311)
T ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-
Confidence 4444455555555444444444444444444444444444433 23333333344444444444444333333211110
Q ss_pred HHHhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 048095 128 DLLKNSLKNSIEHWSQKLNLTKEELSLLQKSIRECKGELDSKERQLAVV 176 (535)
Q Consensus 128 ~l~~~~~k~~v~~~~~~~~~~~~eL~~~~k~i~e~~~EL~~Kek~le~~ 176 (535)
.++.+...++.....++..++..+.....+....++++..+
T Consensus 822 --------~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 822 --------RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred --------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223333344444444444444444444444444444444
No 14
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.11 E-value=0.012 Score=72.92 Aligned_cols=186 Identities=15% Similarity=0.148 Sum_probs=110.4
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 048095 6 NEIRGFNLKLQCKERQLRFLEKRIGESKGELALVQKE------IEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELA 79 (535)
Q Consensus 6 ~~~~~~~~KL~~te~dLerved~i~ElEkqle~Laek------~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe 79 (535)
......-.+|..|+.+|.++.+++.+++.++..|..+ |.++..++.....++..+...+.++...+......+.
T Consensus 293 ~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLe 372 (1486)
T PRK04863 293 RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVE 372 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677899999999999999999999999999444 4444444333344555555666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhHHHHHhhhhhhhHHHHHHhhhhhH----HHHHHH
Q 048095 80 LVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQQQLGLAQSEEDLLKNSLKNSIEHWSQKLNLTK----EELSLL 155 (535)
Q Consensus 80 ~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~~~~~~~~~~~~l~~~~~k~~v~~~~~~~~~~~----~eL~~~ 155 (535)
.+...+...+.++..++.++..++..+.++...+...+.+......... --..++.|+.-..... ..+...
T Consensus 373 eleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~-----~Le~~~~~~~~~~~SdEeLe~~LenF 447 (1486)
T PRK04863 373 EADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQ-----ALERAKQLCGLPDLTADNAEDWLEEF 447 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 6666666666666666666666655555555555433332211100000 0013445552111112 444455
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHhHHHhhhhh
Q 048095 156 QKSIRECKGELDSKERQLAVVQKRIGECNNELQLKENELNL 196 (535)
Q Consensus 156 ~k~i~e~~~EL~~Kek~le~~~k~~~~~~~~l~~k~k~l~~ 196 (535)
...+.+...++...+.++...+.....+.....+....-+.
T Consensus 448 ~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gk 488 (1486)
T PRK04863 448 QAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGE 488 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55566666667777777777777777666666666666554
No 15
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.11 E-value=0.00075 Score=67.75 Aligned_cols=55 Identities=20% Similarity=0.389 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHhHHHhhhhhHHHHHHHHHHHh
Q 048095 154 LLQKSIRECKGELDSKERQLAVVQKRIGECNNELQLKENELNLVKTVVEHCLQKL 208 (535)
Q Consensus 154 ~~~k~i~e~~~EL~~Kek~le~~~k~~~~~~~~l~~k~k~l~~~~~~~~~~~kel 208 (535)
.+...+.+...-...-++.+..+++.|.....+|..-..++..++..+...+.+|
T Consensus 180 ~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 180 DLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333444444444444444444444444444444444444443
No 16
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.11 E-value=0.016 Score=67.38 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhhHHHhHHHhhhhhHH
Q 048095 171 RQLAVVQKRIGECNNELQLKENELNLVK 198 (535)
Q Consensus 171 k~le~~~k~~~~~~~~l~~k~k~l~~~~ 198 (535)
.+++..++.+.....++++-++++....
T Consensus 465 Eele~~~~e~~~lk~~~~~LQ~eLsEk~ 492 (775)
T PF10174_consen 465 EELETYQKELKELKAKLESLQKELSEKE 492 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3566666666666666666666665544
No 17
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.02 E-value=0.02 Score=71.74 Aligned_cols=80 Identities=24% Similarity=0.298 Sum_probs=62.2
Q ss_pred hhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHhHHHhhhhhHHHHHHHHHHHhhhHHH
Q 048095 134 LKNSIEHWSQKLNLTKEELSLLQKSIRECKGELDSKERQLAVVQKRIGECNNELQLKENELNLVKTVVEHCLQKLNLKKE 213 (535)
Q Consensus 134 ~k~~v~~~~~~~~~~~~eL~~~~k~i~e~~~EL~~Kek~le~~~k~~~~~~~~l~~k~k~l~~~~~~~~~~~kele~k~~ 213 (535)
++.++.++.+.+..+..++..+.-.+++-...+...++++..++..+....++|+.-........+....+..+++....
T Consensus 1060 ~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~ 1139 (1930)
T KOG0161|consen 1060 LKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKE 1139 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677788888888888888888888888888888888888888888888888777777777777777777777763
No 18
>PRK03918 chromosome segregation protein; Provisional
Probab=98.01 E-value=0.039 Score=64.81 Aligned_cols=10 Identities=30% Similarity=0.537 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 048095 253 IELKEKKLRQ 262 (535)
Q Consensus 253 ~~~kek~~~~ 262 (535)
+...+.++..
T Consensus 461 i~~l~~~~~~ 470 (880)
T PRK03918 461 LKRIEKELKE 470 (880)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 19
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.00 E-value=0.04 Score=69.18 Aligned_cols=41 Identities=20% Similarity=0.194 Sum_probs=23.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 048095 140 HWSQKLNLTKEELSLLQKSIRECKGELDSKERQLAVVQKRI 180 (535)
Q Consensus 140 ~~~~~~~~~~~eL~~~~k~i~e~~~EL~~Kek~le~~~k~~ 180 (535)
++..+++..+++..++.|.+....-.|...+.-++..++.-
T Consensus 996 ~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r 1036 (1930)
T KOG0161|consen 996 ELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIR 1036 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666655555555555554444443
No 20
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.98 E-value=0.049 Score=63.70 Aligned_cols=39 Identities=26% Similarity=0.586 Sum_probs=29.8
Q ss_pred HHHHHhcccc--CCChHHHHHHHHHHHHhcCCCCCChHHHH
Q 048095 425 GEWKKKMGVI--GENSLEVLGFLHLLAAYRLAPAFDGNELE 463 (535)
Q Consensus 425 ~~WK~~i~~~--~~~~lea~gFL~lla~fgi~s~Fd~del~ 463 (535)
.-||..+..= |.-|+=|+.+.+-+-.|.=+|-|=-||+-
T Consensus 1074 ~iWKeSL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVD 1114 (1174)
T KOG0933|consen 1074 GIWKESLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVD 1114 (1174)
T ss_pred ccHHHHHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhH
Confidence 4699998633 33589999999999999988888666653
No 21
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.97 E-value=0.011 Score=59.48 Aligned_cols=87 Identities=21% Similarity=0.274 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 14 KLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQ 93 (535)
Q Consensus 14 KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~ 93 (535)
|+..++.+|+...+.+...+..+.....+......++..+...+..+...+......+......+..++...++.+..+.
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k 81 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARK 81 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555554444444444444444444444444444444444444444444444433
Q ss_pred HHHHHHH
Q 048095 94 SKEIELG 100 (535)
Q Consensus 94 ~~eeEL~ 100 (535)
.++....
T Consensus 82 ~lE~r~~ 88 (237)
T PF00261_consen 82 VLENREQ 88 (237)
T ss_dssp HHHHHHH
T ss_pred HHHhHHH
Confidence 3333333
No 22
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.94 E-value=0.014 Score=68.82 Aligned_cols=149 Identities=15% Similarity=0.212 Sum_probs=97.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHhHHHhhhhhHHHHHHHHHHHhhhHHHHHHHHH
Q 048095 140 HWSQKLNLTKEELSLLQKSIRECKGELDSKERQLAVVQKRIGECNNELQLKENELNLVKTVVEHCLQKLNLKKEELSLLQ 219 (535)
Q Consensus 140 ~~~~~~~~~~~eL~~~~k~i~e~~~EL~~Kek~le~~~k~~~~~~~~l~~k~k~l~~~~~~~~~~~kele~k~~~~~~~~ 219 (535)
.+.+++..+.-..+++++.+.+....+...-.+.+.....++..-..|+.+..+...++..|+.+++...-.+..+..++
T Consensus 299 ~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~ 378 (1074)
T KOG0250|consen 299 TLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLE 378 (1074)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555556666555555555555555566666666666677788888888889999999999999999999998
Q ss_pred hhhcccchhhhhhhhhhhhhcCcccchhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 048095 220 KSNGEWNGQLECGERQLELRLEPESGIKDCSQQIELKEKKLRQIQSSIEECEKELAIKERHISDYEEKLKAKEKLYDE 297 (535)
Q Consensus 220 ~~~~~~~~~~e~~e~~~~~~~e~~s~~~~~~~~~~~kek~~~~~~~~~e~~~kel~~ke~~i~~~e~el~~~~k~~~~ 297 (535)
+++..+.+.. -.+..+.+.+.+..++..++++..++..+..+..++....+.+..-++++...+..+..
T Consensus 379 k~I~~~~~~~---------~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~ 447 (1074)
T KOG0250|consen 379 KQIADLEKQT---------NNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQ 447 (1074)
T ss_pred HHHHHHHHHH---------HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8877766532 11112334455556666677777777777777776666666666666666555544443
No 23
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.84 E-value=0.072 Score=62.42 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 048095 14 KLQCKERQLRFLEKRIGESKGELALV---QKEIEECNSELWCKEKEL 57 (535)
Q Consensus 14 KL~~te~dLerved~i~ElEkqle~L---aek~~Elk~EL~~LE~eL 57 (535)
+|.+.+..|.-+...+..++.+++++ +.++..++.++.-.--++
T Consensus 678 ~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l 724 (1174)
T KOG0933|consen 678 KLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHEL 724 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666677666666 444555555555444444
No 24
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.77 E-value=0.046 Score=64.84 Aligned_cols=155 Identities=17% Similarity=0.189 Sum_probs=87.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhHHHHHhhhhhhh
Q 048095 58 GLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQQQLGLAQSEEDLLKNSLKNS 137 (535)
Q Consensus 58 eeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~~~~~~~~~~~~l~~~~~k~~ 137 (535)
..+.+.|..+..+++.....+..+++..+.....+.....++..++.....+..+|. .++...+-.-..+...
T Consensus 408 K~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~-------e~~~~l~~~t~~~~~e 480 (1293)
T KOG0996|consen 408 KRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD-------EILDSLKQETEGIREE 480 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhhhHHH
Confidence 333333444444444444444444433333444444444444444444333333333 3333333222333334
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHhHHHhhhhhHHHHHHHHHHHhhhHHHHHHH
Q 048095 138 IEHWSQKLNLTKEELSLLQKSIRECKGELDSKERQLAVVQKRIGECNNELQLKENELNLVKTVVEHCLQKLNLKKEELSL 217 (535)
Q Consensus 138 v~~~~~~~~~~~~eL~~~~k~i~e~~~EL~~Kek~le~~~k~~~~~~~~l~~k~k~l~~~~~~~~~~~kele~k~~~~~~ 217 (535)
+.....++..+-+++..++-.++-...||+......+...+.++.....|......+..-+..+.....+|.+.+.++++
T Consensus 481 ~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~ 560 (1293)
T KOG0996|consen 481 IEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKE 560 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 44556777777777778888888888888887777777777777777777777777776666677776677776655555
Q ss_pred HH
Q 048095 218 LQ 219 (535)
Q Consensus 218 ~~ 219 (535)
..
T Consensus 561 ~~ 562 (1293)
T KOG0996|consen 561 KE 562 (1293)
T ss_pred HH
Confidence 55
No 25
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.76 E-value=0.1 Score=64.97 Aligned_cols=141 Identities=20% Similarity=0.190 Sum_probs=63.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHhHHHhhhhhHHHHHHHHHHHh----hhHHHHHHHHHhhhcccchhhh
Q 048095 155 LQKSIRECKGELDSKERQLAVVQKRIGECNNELQLKENELNLVKTVVEHCLQKL----NLKKEELSLLQKSNGEWNGQLE 230 (535)
Q Consensus 155 ~~k~i~e~~~EL~~Kek~le~~~k~~~~~~~~l~~k~k~l~~~~~~~~~~~kel----e~k~~~~~~~~~~~~~~~~~~e 230 (535)
.+....-.+-|....+.+...+...+....++|.+.+++.......+..|+.++ ..-.+.++++..++.++...++
T Consensus 176 ~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie 255 (1822)
T KOG4674|consen 176 SQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIE 255 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444445555554433333333332222 2222333444444444443333
Q ss_pred hhhhhhh-hhcCcccchhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 048095 231 CGERQLE-LRLEPESGIKDCSQQIELKEKKLRQIQSSIEECEKELAIKERHISDYEEKLKAKEKLY 295 (535)
Q Consensus 231 ~~e~~~~-~~~e~~s~~~~~~~~~~~kek~~~~~~~~~e~~~kel~~ke~~i~~~e~el~~~~k~~ 295 (535)
++-..+- ++.--.+....|.+|+..+.+-+.++.+..++...++.--.+.|...++=++....++
T Consensus 256 ~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~ 321 (1822)
T KOG4674|consen 256 SLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDASERN 321 (1822)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3211111 1111122345677777777777777777777776666555445544444444433333
No 26
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.71 E-value=0.17 Score=58.07 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=18.2
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHhHHHhhh
Q 048095 164 GELDSKERQLAVVQKRIGECNNELQLKENEL 194 (535)
Q Consensus 164 ~EL~~Kek~le~~~k~~~~~~~~l~~k~k~l 194 (535)
+++.-+++|++.|+--++..-.+++...|++
T Consensus 266 k~ieE~m~qlk~kns~L~~ElSqkeelVk~~ 296 (1265)
T KOG0976|consen 266 KEIEEKMRQLKAKNSVLGDELSQKEELVKEL 296 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3444555566666666666666666665555
No 27
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.70 E-value=0.12 Score=61.63 Aligned_cols=56 Identities=9% Similarity=0.142 Sum_probs=38.7
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 048095 242 PESGIKDCSQQIELKEKKLRQIQSSIEECEKELAIKERHISDYEEKLKAKEKLYDE 297 (535)
Q Consensus 242 ~~s~~~~~~~~~~~kek~~~~~~~~~e~~~kel~~ke~~i~~~e~el~~~~k~~~~ 297 (535)
..++++-++.+++.....-..-.+.+++.++.|...+.++++..-.+.+....+.+
T Consensus 498 ~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~ 553 (1293)
T KOG0996|consen 498 ARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPS 553 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34566677777777776666667778888888887777776666666666666544
No 28
>PRK11637 AmiB activator; Provisional
Probab=97.66 E-value=0.043 Score=59.64 Aligned_cols=90 Identities=12% Similarity=0.169 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 16 QCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSK 95 (535)
Q Consensus 16 ~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~ 95 (535)
++++.+|..++..|.++++++..++.+..+...++..++.+|..+...|...+.+|...+.+|..++.+|...+.++...
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666555555565555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHH
Q 048095 96 EIELGLLQKR 105 (535)
Q Consensus 96 eeEL~~lqk~ 105 (535)
...+...-..
T Consensus 123 ~~~l~~rlra 132 (428)
T PRK11637 123 ERLLAAQLDA 132 (428)
T ss_pred HHHHHHHHHH
Confidence 5555444333
No 29
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.62 E-value=0.23 Score=57.15 Aligned_cols=208 Identities=18% Similarity=0.230 Sum_probs=97.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 27 KRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRV 106 (535)
Q Consensus 27 d~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l 106 (535)
....+++.++..+..++..++....+++.+++.++..|...+.++.....+|++..+++.....++.....+|...-+.+
T Consensus 92 rdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L 171 (1265)
T KOG0976|consen 92 RDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDL 171 (1265)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 33444444455555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhhhhhHHHHHHhhhhhhhHHHHHhhhhhhhHHHHHHhhhhhHH---HHHH---HHHHHHHHHhhh--------------
Q 048095 107 GECNCELECKQQQLGLAQSEEDLLKNSLKNSIEHWSQKLNLTKE---ELSL---LQKSIRECKGEL-------------- 166 (535)
Q Consensus 107 ~E~~~el~~k~~~~~~~~~~~~l~~~~~k~~v~~~~~~~~~~~~---eL~~---~~k~i~e~~~EL-------------- 166 (535)
..-+.+|.+.+-+|.--..+-.-.++.+.-+++.+.+++-.+.. ++.. ....|-+.+.+|
T Consensus 172 ~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~ 251 (1265)
T KOG0976|consen 172 HDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTC 251 (1265)
T ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhh
Confidence 55555555554444322211111112222222222222111110 0000 111111122222
Q ss_pred ---hHHHHHHHHHHHHHHHhhHHHhHHHhhhhhHHHHHHHHHHHhhhHHHHHHHHHhhhcccchhhhhhhhhhh
Q 048095 167 ---DSKERQLAVVQKRIGECNNELQLKENELNLVKTVVEHCLQKLNLKKEELSLLQKSNGEWNGQLECGERQLE 237 (535)
Q Consensus 167 ---~~Kek~le~~~k~~~~~~~~l~~k~k~l~~~~~~~~~~~kele~k~~~~~~~~~~~~~~~~~~e~~e~~~~ 237 (535)
+-.-..|+..++.|++.+++++-+.--|+-...++...++++. +++.-++.+.---.|-.+..-++|.
T Consensus 252 s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~q---eeLd~lkqt~t~a~gdseqatkylh 322 (1265)
T KOG0976|consen 252 SMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQ---EELDTLKQTRTRADGDSEQATKYLH 322 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH---HHHHHHHHHHHHhhccHHHHHHHHH
Confidence 2222367788888888888888888877777777666666554 2333333333333343444444444
No 30
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.61 E-value=0.087 Score=58.65 Aligned_cols=10 Identities=50% Similarity=0.810 Sum_probs=7.5
Q ss_pred CCchhHHHHH
Q 048095 364 CDPALLVLDA 373 (535)
Q Consensus 364 ~DPAkLVLda 373 (535)
.+|.-++||=
T Consensus 495 ~~~~~lilDE 504 (562)
T PHA02562 495 VDTNLLILDE 504 (562)
T ss_pred CCcCeEEEec
Confidence 5888888774
No 31
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.59 E-value=0.21 Score=55.87 Aligned_cols=94 Identities=15% Similarity=0.214 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 13 LKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSEL 92 (535)
Q Consensus 13 ~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El 92 (535)
.+|+.+......+......++++...+..++..+..++.....+...++....++....+.+..+...+..+..+...++
T Consensus 143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri 222 (546)
T PF07888_consen 143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRI 222 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455554455555555555555555555555555555554455544444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHH
Q 048095 93 QSKEIELGLLQKRV 106 (535)
Q Consensus 93 ~~~eeEL~~lqk~l 106 (535)
..++..+..+.+..
T Consensus 223 ~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 223 RELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHH
Confidence 45554444444444
No 32
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.49 E-value=0.55 Score=58.76 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=17.5
Q ss_pred HhhhhhHHHHHHHHHH----HHHHHhhhhHHHHHHHHHHHH
Q 048095 143 QKLNLTKEELSLLQKS----IRECKGELDSKERQLAVVQKR 179 (535)
Q Consensus 143 ~~~~~~~~eL~~~~k~----i~e~~~EL~~Kek~le~~~k~ 179 (535)
.++.....+|-+++.. +......|..+...+..++-.
T Consensus 199 ~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~ 239 (1822)
T KOG4674|consen 199 RELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEK 239 (1822)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555 444444444444444443333
No 33
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.46 E-value=0.25 Score=57.98 Aligned_cols=323 Identities=16% Similarity=0.166 Sum_probs=140.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHHHHHH------HHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHHH
Q 048095 11 FNLKLQCKERQLRFLEKRIGESKGELALVQ------KEIEECNSELWCKEK-----ELGLVQKRIRGCNGELQSKQGELA 79 (535)
Q Consensus 11 ~~~KL~~te~dLerved~i~ElEkqle~La------ek~~Elk~EL~~LE~-----eLeeLK~eIeE~e~eIe~~qkeIe 79 (535)
-.+.++.|++--.-++..+..++..+.+|. ..|.++..+-+.++= ++.++..++..+.+.....-..-+
T Consensus 175 Slkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~ 254 (1200)
T KOG0964|consen 175 SLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESE 254 (1200)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhh
Confidence 345677777766666666666666666663 334444333333322 223333333333333333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhh-h--HHHHHhhhhhhhHHHHHHhhhhhHHHHHHHH
Q 048095 80 LVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQQQLGLAQ-S--EEDLLKNSLKNSIEHWSQKLNLTKEELSLLQ 156 (535)
Q Consensus 80 ~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~~~~~~~~-~--~~~l~~~~~k~~v~~~~~~~~~~~~eL~~~~ 156 (535)
.+...+.....++.....++..+...+.-+..+.+-.+..--+++ + -.+|.-..++.+++.-.+.....-..|..+.
T Consensus 255 ~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~ 334 (1200)
T KOG0964|consen 255 QYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVK 334 (1200)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHH
Confidence 233333333333333333333333333333332222211111111 0 1122222333344433444444445566666
Q ss_pred HHHHHHHhhhhHHHHHHHHH---HHHHHHhhHHHhHHHhhhhhHHHHHHHHHHHhhhHHHHHHHHHhhhcccchh-----
Q 048095 157 KSIRECKGELDSKERQLAVV---QKRIGECNNELQLKENELNLVKTVVEHCLQKLNLKKEELSLLQKSNGEWNGQ----- 228 (535)
Q Consensus 157 k~i~e~~~EL~~Kek~le~~---~k~~~~~~~~l~~k~k~l~~~~~~~~~~~kele~k~~~~~~~~~~~~~~~~~----- 228 (535)
-.|.+...||..-+..+.++ ++....+.+.|+.+.+.|-.-| +..--|.||+.-=+||..+...+..-
T Consensus 335 ~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kq----gr~sqFssk~eRDkwir~ei~~l~~~i~~~k 410 (1200)
T KOG0964|consen 335 DKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQ----GRYSQFSSKEERDKWIRSEIEKLKRGINDTK 410 (1200)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh----ccccccCcHHHHHHHHHHHHHHHHHHHhhhh
Confidence 66677777766666655544 3445555555555544442211 11233444444444554433333221
Q ss_pred ---------hhhhhhhhhhhcCcccchhhhhHHHHHHHHHHHHHHHhHHHHHHHHH---HHHhhhhhHHHHHHHHHHHHH
Q 048095 229 ---------LECGERQLELRLEPESGIKDCSQQIELKEKKLRQIQSSIEECEKELA---IKERHISDYEEKLKAKEKLYD 296 (535)
Q Consensus 229 ---------~e~~e~~~~~~~e~~s~~~~~~~~~~~kek~~~~~~~~~e~~~kel~---~ke~~i~~~e~el~~~~k~~~ 296 (535)
++.-+.+++-.+ +++++....|..-.-+++.|-..+-....+++ .+-+++=.-+..+++.
T Consensus 411 e~e~~lq~e~~~~e~~l~~~~---e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~----- 482 (1200)
T KOG0964|consen 411 EQENILQKEIEDLESELKEKL---EEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSL----- 482 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 111111111111 12333333333333333333222222222211 2223333333333322
Q ss_pred HHHHHHHHHHHhhhhhccCCCCC-cchhhHHHHHhhhCChHHHHHHHHHhh
Q 048095 297 EIKKSIKELESAKKELEQPKSLT-DNEETRLLSLQSMNNGRSLQLILNQHL 346 (535)
Q Consensus 297 ~~~k~~ke~el~ekq~e~~~~~~-~~~~~~L~~lC~~MD~~gL~~fv~~~~ 346 (535)
....-.+++.+++++.+...-+ .|--...+.+|+..-..|...+|++..
T Consensus 483 -i~~~~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~ 532 (1200)
T KOG0964|consen 483 -IANLEEDLSRAEKNLRATMNRSVANGIDSVRKIKEELKPNGVFGTVYELI 532 (1200)
T ss_pred -HHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhcccccceehhhhh
Confidence 2222336778888887766422 344455666777777788888888765
No 34
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.39 E-value=0.37 Score=53.83 Aligned_cols=41 Identities=24% Similarity=0.217 Sum_probs=25.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 048095 143 QKLNLTKEELSLLQKSIRECKGELDSKERQLAVVQKRIGEC 183 (535)
Q Consensus 143 ~~~~~~~~eL~~~~k~i~e~~~EL~~Kek~le~~~k~~~~~ 183 (535)
-++-+++++.-...-.++..+++++.+=.++++....|+.-
T Consensus 353 ~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 353 SELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555566666777777777777777766665
No 35
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.30 E-value=0.14 Score=56.99 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=22.2
Q ss_pred HHHHHHHHhhHHHhHHHhhhhhHHHHHHHHHHHhhhHHHHHHHHHhhhccc
Q 048095 175 VVQKRIGECNNELQLKENELNLVKTVVEHCLQKLNLKKEELSLLQKSNGEW 225 (535)
Q Consensus 175 ~~~k~~~~~~~~l~~k~k~l~~~~~~~~~~~kele~k~~~~~~~~~~~~~~ 225 (535)
.....+......+...+..+...+..+..+..+....+.++..++....+.
T Consensus 327 ~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~ 377 (562)
T PHA02562 327 EIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDN 377 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Confidence 333333333334444444444444444444444444444555554443333
No 36
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.24 E-value=0.1 Score=52.73 Aligned_cols=77 Identities=23% Similarity=0.250 Sum_probs=59.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 048095 12 NLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEES 88 (535)
Q Consensus 12 ~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~ 88 (535)
-.+|+....+++|++..+.+..+.++.+...+..++..+.+++..+..++.++...+.+|......+...+..+...
T Consensus 9 L~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v 85 (239)
T COG1579 9 LLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAV 85 (239)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34566777778888888888888888888888888888888888888888888888777777777777777666443
No 37
>PRK11637 AmiB activator; Provisional
Probab=97.21 E-value=0.44 Score=51.85 Aligned_cols=90 Identities=13% Similarity=0.129 Sum_probs=49.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 24 FLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQ 103 (535)
Q Consensus 24 rved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lq 103 (535)
.+.+.+.+++.+++.+..++.....++..++.++..+..+|......|...+.+|..++.+|...+.++...+.++...+
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhhhhhhH
Q 048095 104 KRVGECNCEL 113 (535)
Q Consensus 104 k~l~E~~~el 113 (535)
..+....+..
T Consensus 124 ~~l~~rlra~ 133 (428)
T PRK11637 124 RLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHH
Confidence 5544444433
No 38
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.10 E-value=0.77 Score=51.95 Aligned_cols=54 Identities=17% Similarity=0.118 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 13 LKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRG 66 (535)
Q Consensus 13 ~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE 66 (535)
..+..+++.|+.++..+..+...++.|...-.+-+.++..+...++.+++.+..
T Consensus 105 ~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~ 158 (569)
T PRK04778 105 HEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLA 158 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555555444444444444444444444444433
No 39
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.02 E-value=0.87 Score=51.11 Aligned_cols=102 Identities=26% Similarity=0.262 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 20 RQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIEL 99 (535)
Q Consensus 20 ~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL 99 (535)
.+|..+...+.+..+....+...+..+..++..+...+....+.......++......+..+++++...+..+...+.++
T Consensus 92 ~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~ 171 (546)
T KOG0977|consen 92 AELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDEL 171 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555445555555555555555555555555555555555555
Q ss_pred HHHHHHHhhhhhhHHHHHHhhh
Q 048095 100 GLLQKRVGECNCELECKQQQLG 121 (535)
Q Consensus 100 ~~lqk~l~E~~~el~~k~~~~~ 121 (535)
..+..+..-+..+|....+.+.
T Consensus 172 ~~Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 172 KRLKAENSRLREELARARKQLD 193 (546)
T ss_pred HHHHHHhhhhHHHHHHHHHHHH
Confidence 5555555555555555554443
No 40
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.00 E-value=0.19 Score=50.88 Aligned_cols=72 Identities=22% Similarity=0.263 Sum_probs=46.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 29 IGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELG 100 (535)
Q Consensus 29 i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~ 100 (535)
|..+..++..+..+..+....|.....+++.++..+...+.++..+++++..++.+|.+....+...+..+.
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~ 83 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLS 83 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446666666666666677777776666666666666666666666666666666666666655555555543
No 41
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.92 E-value=1.1 Score=50.94 Aligned_cols=107 Identities=15% Similarity=0.128 Sum_probs=59.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhHHHHHhhhhhhhHHH
Q 048095 61 QKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQQQLGLAQSEEDLLKNSLKNSIEH 140 (535)
Q Consensus 61 K~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~~~~~~~~~~~~l~~~~~k~~v~~ 140 (535)
...|+++..........+..++..|..++.-+..-..++....+.+.-++.+|.-+--+++.- . ++. +--...+++
T Consensus 334 e~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEm-t--k~k-~~ke~elee 409 (786)
T PF05483_consen 334 EAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEM-T--KQK-NNKEVELEE 409 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHH-H--HHh-hhhHHHHHH
Confidence 344555555555555556666777777777777777777778888888888887666555522 1 111 111122445
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhhhHHHHH
Q 048095 141 WSQKLNLTKEELSLLQKSIRECKGELDSKERQ 172 (535)
Q Consensus 141 ~~~~~~~~~~eL~~~~k~i~e~~~EL~~Kek~ 172 (535)
+...|..+.+ |--..+++..-..+|+..+.+
T Consensus 410 L~~~L~e~qk-ll~ekk~~eki~E~lq~~eqe 440 (786)
T PF05483_consen 410 LKKILAEKQK-LLDEKKQFEKIAEELQGTEQE 440 (786)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 5555555553 333344455555555555443
No 42
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.85 E-value=0.73 Score=47.61 Aligned_cols=59 Identities=19% Similarity=0.130 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 46 CNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQK 104 (535)
Q Consensus 46 lk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk 104 (535)
+..++..+...+.........++.++..+.+.+.......-++++.+..+..+|.++..
T Consensus 80 l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~ 138 (312)
T PF00038_consen 80 LKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQ 138 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333444444444444444444444455555555555555444
No 43
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.84 E-value=0.32 Score=55.37 Aligned_cols=200 Identities=16% Similarity=0.190 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 18 KERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEI 97 (535)
Q Consensus 18 te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~ee 97 (535)
.+.+|..+.+.+.++..++..+...+..+...+..+..++.+.+....+++.++....+.+..+ .+.+..+.+++.
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL----~d~e~ni~kL~~ 401 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELL----PDAEENIAKLQA 401 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCcHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444444444443333222 222333344444
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhhhhHHHHHhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 048095 98 ELGLLQKRVGECNCELECKQQQLGLAQSEEDLLKNSLKNSIEHWSQKLNLTKEELSLLQKSIRECKGELDSKERQLAVVQ 177 (535)
Q Consensus 98 EL~~lqk~l~E~~~el~~k~~~~~~~~~~~~l~~~~~k~~v~~~~~~~~~~~~eL~~~~k~i~e~~~EL~~Kek~le~~~ 177 (535)
-++.....+.++..+-+..+..+-...-..+ ........+...+..++..++..+.+...|+..|+..+.-+.
T Consensus 402 ~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk-------~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~ 474 (594)
T PF05667_consen 402 LVEASEQRLVELAQQWEKHRAPLIEEYRRLK-------EKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLV 474 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555544433322211111 111122344555667888899999999999999988777766
Q ss_pred HHHHHhhHHHhHHH---hhhhhHHHHHHHHHHHhhhHHHHHHHHHhhhcccchhh
Q 048095 178 KRIGECNNELQLKE---NELNLVKTVVEHCLQKLNLKKEELSLLQKSNGEWNGQL 229 (535)
Q Consensus 178 k~~~~~~~~l~~k~---k~l~~~~~~~~~~~kele~k~~~~~~~~~~~~~~~~~~ 229 (535)
..++...... ++. .-.-.|..-|+.|=.++...-.+.+.||++..-+.|+|
T Consensus 475 ~e~e~~~k~~-~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL 528 (594)
T PF05667_consen 475 KELEKLPKDV-NRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKL 528 (594)
T ss_pred HHHHhCCCCC-CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655544331 111 11122333344444444444445555565555555544
No 44
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.82 E-value=0.85 Score=47.91 Aligned_cols=53 Identities=23% Similarity=0.243 Sum_probs=36.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 048095 27 KRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELA 79 (535)
Q Consensus 27 d~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe 79 (535)
..+..-+..++.|..+|.++-.+...++.++...++....+..+....+.+..
T Consensus 15 ~~l~~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~ 67 (309)
T PF09728_consen 15 NKLSSPEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELS 67 (309)
T ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556777778888888777777777777777776666666666666555
No 45
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.81 E-value=1.3 Score=49.79 Aligned_cols=59 Identities=22% Similarity=0.174 Sum_probs=28.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 048095 58 GLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECK 116 (535)
Q Consensus 58 eeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k 116 (535)
...+.++..++.++...-..-....+..++...........+..+...+..+...|.+.
T Consensus 133 ~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~ 191 (522)
T PF05701_consen 133 DSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESA 191 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444555555555555555444
No 46
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.68 E-value=0.73 Score=45.28 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 048095 149 KEELSLLQKSIRECKGELDSKERQLAVVQKRIGE 182 (535)
Q Consensus 149 ~~eL~~~~k~i~e~~~EL~~Kek~le~~~k~~~~ 182 (535)
..+|..+...+.+....+..-+++++..++.+.-
T Consensus 124 ~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~r 157 (194)
T PF15619_consen 124 QRKLSQLEQKLQEKEKKIQELEKQLELENKSFRR 157 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4677777777777777777777777776665443
No 47
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.62 E-value=1.7 Score=48.81 Aligned_cols=100 Identities=15% Similarity=0.116 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 18 KERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEI 97 (535)
Q Consensus 18 te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~ee 97 (535)
.+..|+.......++.+....|......+..++..++.+|...+.....+.............+..+...+..+......
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ 220 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQ 220 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhhhhhhHHHHH
Q 048095 98 ELGLLQKRVGECNCELECKQ 117 (535)
Q Consensus 98 EL~~lqk~l~E~~~el~~k~ 117 (535)
++..+...+..+.......+
T Consensus 221 ri~~LEedi~~l~qk~~E~e 240 (546)
T PF07888_consen 221 RIRELEEDIKTLTQKEKEQE 240 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777766666655554333
No 48
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.51 E-value=2 Score=48.21 Aligned_cols=63 Identities=13% Similarity=0.137 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 33 KGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSK 95 (535)
Q Consensus 33 Ekqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~ 95 (535)
....+++.+++..++..+.....-...++.......+.++.+..+++..+.+++.++.+...+
T Consensus 258 ~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~L 320 (581)
T KOG0995|consen 258 PGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDEL 320 (581)
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555565555555555555544444444444444444444444444444443333
No 49
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.47 E-value=1.8 Score=47.17 Aligned_cols=73 Identities=18% Similarity=0.256 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 048095 13 LKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEI 85 (535)
Q Consensus 13 ~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eI 85 (535)
.+|+++..+|.+++..|.+...+...|...+.++.+++..++.++.+....+...+..|......++.++.+-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5677788888888777777777777777777777777777777777666666666666666666666666554
No 50
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.45 E-value=1.4 Score=45.62 Aligned_cols=46 Identities=15% Similarity=0.170 Sum_probs=17.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 58 GLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQ 103 (535)
Q Consensus 58 eeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lq 103 (535)
..++.+..........++.++..+...+++.......++.++..++
T Consensus 85 ~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~ 130 (312)
T PF00038_consen 85 EDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLK 130 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333
No 51
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.43 E-value=0.56 Score=43.85 Aligned_cols=109 Identities=22% Similarity=0.207 Sum_probs=85.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 11 FNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNS 90 (535)
Q Consensus 11 ~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~ 90 (535)
...+|..++..-+.++|.|..++..+...+........+..+..+.+..++.++..+...+..+..++..+..+...+..
T Consensus 8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k 87 (140)
T PF10473_consen 8 VEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDK 87 (140)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888888888888888888888888888888888888888888888888888888888888877777777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 048095 91 ELQSKEIELGLLQKRVGECNCELECKQQQ 119 (535)
Q Consensus 91 El~~~eeEL~~lqk~l~E~~~el~~k~~~ 119 (535)
.+..+..+++.+.....++.+-|..++.+
T Consensus 88 ~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 88 ELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 77777777777777777777777666644
No 52
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.40 E-value=1.3 Score=50.44 Aligned_cols=160 Identities=21% Similarity=0.226 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 048095 41 KEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQQQL 120 (535)
Q Consensus 41 ek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~~~~ 120 (535)
....+...++..+..+++.+...|.++..++..+...+..+..++.+.+.+....+.++.-..+.+ +| ..
T Consensus 321 ~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~-----~l-----L~ 390 (594)
T PF05667_consen 321 DEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTV-----EL-----LP 390 (594)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH-----hc
Confidence 344555555566666666666666666666666555555555555555555555554444322211 00 00
Q ss_pred hhhhhHHHHHhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHhHHHhhhhhHHHH
Q 048095 121 GLAQSEEDLLKNSLKNSIEHWSQKLNLTKEELSLLQKSIRECKGELDSKERQLAVVQKRIGECNNELQLKENELNLVKTV 200 (535)
Q Consensus 121 ~~~~~~~~l~~~~~k~~v~~~~~~~~~~~~eL~~~~k~i~e~~~EL~~Kek~le~~~k~~~~~~~~l~~k~k~l~~~~~~ 200 (535)
+...+..+ ++..|+.-.+.+.....+.+.++.-+.+- +..+.........+...+-.++..++..
T Consensus 391 d~e~ni~k-----L~~~v~~s~~rl~~L~~qWe~~R~pL~~e----------~r~lk~~~~~~~~e~~~~~~~ik~~r~~ 455 (594)
T PF05667_consen 391 DAEENIAK-----LQALVEASEQRLVELAQQWEKHRAPLIEE----------YRRLKEKASNRESESKQKLQEIKELREE 455 (594)
T ss_pred CcHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhHHHHH----------HHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 11111122 22222222223332223333333322222 2222222223333444444555556666
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhccc
Q 048095 201 VEHCLQKLNLKKEELSLLQKSNGEW 225 (535)
Q Consensus 201 ~~~~~kele~k~~~~~~~~~~~~~~ 225 (535)
++....++..|+...++|...+..+
T Consensus 456 ~k~~~~e~~~Kee~~~qL~~e~e~~ 480 (594)
T PF05667_consen 456 IKEIEEEIRQKEELYKQLVKELEKL 480 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7777777777776666666544433
No 53
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.38 E-value=3.7 Score=49.77 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhhhhHHH
Q 048095 151 ELSLLQKSIRECKGELDSKE 170 (535)
Q Consensus 151 eL~~~~k~i~e~~~EL~~Ke 170 (535)
...-+++...+++..+.+-+
T Consensus 561 ~~~kl~~~~~e~~~~iq~~~ 580 (1317)
T KOG0612|consen 561 DAGKLRKHSKELSKQIQQEL 580 (1317)
T ss_pred HHhhHhhhhhhhhHHHHHHh
Confidence 33334444444444444333
No 54
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.37 E-value=2.1 Score=46.98 Aligned_cols=147 Identities=14% Similarity=0.173 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 048095 35 ELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELE 114 (535)
Q Consensus 35 qle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~ 114 (535)
.++++.++|+.++.....++.-...++....+--+.++.++.+|+..+.+|+.++..+..+..++....
T Consensus 296 ~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~----------- 364 (622)
T COG5185 296 KIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQG----------- 364 (622)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcC-----------
Confidence 334445555555555555555555555555555555555555555555444444444433333333211
Q ss_pred HHHHhhhhhhhHHHHHhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHhHHHhhh
Q 048095 115 CKQQQLGLAQSEEDLLKNSLKNSIEHWSQKLNLTKEELSLLQKSIRECKGELDSKERQLAVVQKRIGECNNELQLKENEL 194 (535)
Q Consensus 115 ~k~~~~~~~~~~~~l~~~~~k~~v~~~~~~~~~~~~eL~~~~k~i~e~~~EL~~Kek~le~~~k~~~~~~~~l~~k~k~l 194 (535)
+|-+. ++....+.....++|+-+.=.+++..++.++.+.+....-+.++...-++.|---++
T Consensus 365 ---------Is~e~---------fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i 426 (622)
T COG5185 365 ---------ISTEQ---------FELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNI 426 (622)
T ss_pred ---------CCHHH---------HHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111 001112222233555555556666666666666666666666666666666666665
Q ss_pred hhHHHHHHHHHHHhhh
Q 048095 195 NLVKTVVEHCLQKLNL 210 (535)
Q Consensus 195 ~~~~~~~~~~~kele~ 210 (535)
.....+|.+-.+++..
T Consensus 427 ~~~~~~i~~~~nd~~l 442 (622)
T COG5185 427 TRSRSQIGHNVNDSSL 442 (622)
T ss_pred cccHHHHhhcCCCCce
Confidence 5555555555554443
No 55
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.34 E-value=2.2 Score=50.89 Aligned_cols=41 Identities=24% Similarity=0.401 Sum_probs=30.1
Q ss_pred CChHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhhhhhhhH
Q 048095 436 ENSLEVLGFLHLLAAYRLAPAFDGNELESLLDIVAHYRQTA 476 (535)
Q Consensus 436 ~~~lea~gFL~lla~fgi~s~Fd~del~~Lv~~va~~~~~~ 476 (535)
+..++|+|+|--+-+|.=+|-|=-||+-.-+....--+.|.
T Consensus 1056 EKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvas 1096 (1141)
T KOG0018|consen 1056 EKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVAS 1096 (1141)
T ss_pred HHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHH
Confidence 34789999999999999999998888765555444444443
No 56
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.28 E-value=0.66 Score=43.38 Aligned_cols=51 Identities=14% Similarity=0.179 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 048095 21 QLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGEL 71 (535)
Q Consensus 21 dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eI 71 (535)
+.+...+...+++.++..+..+....-.+|..|...+..+..+++.+...+
T Consensus 8 E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 8 EADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444433333333333333333333333333333333
No 57
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=2 Score=49.71 Aligned_cols=84 Identities=23% Similarity=0.193 Sum_probs=46.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048095 30 GESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGEC 109 (535)
Q Consensus 30 ~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~ 109 (535)
.|+..|...-++.+--++.....++.+++.|+.++.++.+.+...+-.+......|+.....+...-.+++.++.++.|+
T Consensus 419 qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~ 498 (1118)
T KOG1029|consen 419 QEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKEL 498 (1118)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333333335555556666666777777777777766666666555555555555555444444444455555544444
Q ss_pred hhhH
Q 048095 110 NCEL 113 (535)
Q Consensus 110 ~~el 113 (535)
...|
T Consensus 499 q~kl 502 (1118)
T KOG1029|consen 499 QEKL 502 (1118)
T ss_pred HHHH
Confidence 4443
No 58
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.15 E-value=0.56 Score=49.38 Aligned_cols=111 Identities=19% Similarity=0.229 Sum_probs=70.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHH
Q 048095 10 GFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLV----QKRIRGCNGELQSKQGELALVEKEI 85 (535)
Q Consensus 10 ~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeL----K~eIeE~e~eIe~~qkeIe~le~eI 85 (535)
+....+...+.|...+...+..+...+..+..++..+..++..+.....++ ..++...+.++.....+|+.....+
T Consensus 153 ~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l 232 (325)
T PF08317_consen 153 GLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKEL 232 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666666777777777777766665444 5566666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 048095 86 EESNSELQSKEIELGLLQKRVGECNCELECKQQQL 120 (535)
Q Consensus 86 ee~e~El~~~eeEL~~lqk~l~E~~~el~~k~~~~ 120 (535)
.+.+.++..+...+..+.....++..++...++..
T Consensus 233 ~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 233 AELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666665555333
No 59
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.15 E-value=3.3 Score=46.93 Aligned_cols=54 Identities=20% Similarity=0.161 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 12 NLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIR 65 (535)
Q Consensus 12 ~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIe 65 (535)
...+..++..|+.++..+..+...++.|...=.+-+.++..+...++.+++.+.
T Consensus 100 ~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll 153 (560)
T PF06160_consen 100 KQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELL 153 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555543333344444444444444433333
No 60
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.07 E-value=3.6 Score=46.67 Aligned_cols=51 Identities=18% Similarity=0.130 Sum_probs=31.1
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 7 EIRGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKEL 57 (535)
Q Consensus 7 ~~~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eL 57 (535)
.|......|+.++.++..+.+.+.++...-..-...+.+++..|..+.+.+
T Consensus 106 ~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~l 156 (569)
T PRK04778 106 EINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSL 156 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666666666666666666666555
No 61
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.06 E-value=2.3 Score=44.33 Aligned_cols=92 Identities=13% Similarity=0.150 Sum_probs=61.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 048095 9 RGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEES 88 (535)
Q Consensus 9 ~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~ 88 (535)
..+-.|.+.+...+.++.....++..+...++.+.+++..++..+-.....++.+-.++..++..+...-..+-+.++.+
T Consensus 9 ~E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL 88 (294)
T COG1340 9 DELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQEL 88 (294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777888888888888888888887777777777777777776666666666666666655555555555554
Q ss_pred HHHHHHHHHHHH
Q 048095 89 NSELQSKEIELG 100 (535)
Q Consensus 89 e~El~~~eeEL~ 100 (535)
-..........+
T Consensus 89 ~~~~~~l~e~~~ 100 (294)
T COG1340 89 RKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHhh
Confidence 444444444433
No 62
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.98 E-value=5.3 Score=47.89 Aligned_cols=83 Identities=17% Similarity=0.264 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 048095 40 QKEIEECNSELWCKEKEL-----GLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELE 114 (535)
Q Consensus 40 aek~~Elk~EL~~LE~eL-----eeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~ 114 (535)
+++|..++.+...+...+ -.++..|.....++++.+.++..++...+....++.....+...+.+++...-.++.
T Consensus 200 aeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~ 279 (1141)
T KOG0018|consen 200 AEKYQRLKDEKGKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKIS 279 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666555554 222666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhhhh
Q 048095 115 CKQQQLGL 122 (535)
Q Consensus 115 ~k~~~~~~ 122 (535)
-++..+..
T Consensus 280 ~ke~~l~e 287 (1141)
T KOG0018|consen 280 EKEEKLAE 287 (1141)
T ss_pred HHHHHHhh
Confidence 66655543
No 63
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.88 E-value=4.3 Score=48.23 Aligned_cols=173 Identities=21% Similarity=0.227 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 048095 13 LKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSEL-------WCKEKELGLVQKRIRGCNGELQSKQGELALVEKEI 85 (535)
Q Consensus 13 ~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL-------~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eI 85 (535)
-.|+.+..+..++...+.+++..+..|....+.+..+. ..|+-++..+..+|.--...-...-..+..+...|
T Consensus 258 ~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki 337 (1200)
T KOG0964|consen 258 DALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKI 337 (1200)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 34555666666666677777777776655444444443 33333334444444443333334444444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHhhhhhhhHHHHHhhhhhhhHHHHH---HhhhhhHHHHHHHHHHH
Q 048095 86 EESNSELQSKEIELGLLQKRVGECN---CELECKQQQLGLAQSEEDLLKNSLKNSIEHWS---QKLNLTKEELSLLQKSI 159 (535)
Q Consensus 86 ee~e~El~~~eeEL~~lqk~l~E~~---~el~~k~~~~~~~~~~~~l~~~~~k~~v~~~~---~~~~~~~~eL~~~~k~i 159 (535)
.+.+.++....-....+.+.=.-+. +.|+.+...+ . .-+|.-..|+ +.=.|--.++..+.-.|
T Consensus 338 ~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l---------~--~Kqgr~sqFssk~eRDkwir~ei~~l~~~i 406 (1200)
T KOG0964|consen 338 EEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDL---------L--AKQGRYSQFSSKEERDKWIRSEIEKLKRGI 406 (1200)
T ss_pred HHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHH---------H--HhhccccccCcHHHHHHHHHHHHHHHHHHH
Confidence 5555444444443333333211111 2222222111 0 0111111221 11223335555555555
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhHHHhHHHhhhhh
Q 048095 160 RECKGELDSKERQLAVVQKRIGECNNELQLKENELNL 196 (535)
Q Consensus 160 ~e~~~EL~~Kek~le~~~k~~~~~~~~l~~k~k~l~~ 196 (535)
.+-...-....++++.++..++...++.+.-+-.++.
T Consensus 407 ~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e 443 (1200)
T KOG0964|consen 407 NDTKEQENILQKEIEDLESELKEKLEEIKELESSINE 443 (1200)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 5555555555556666665555555555544444443
No 64
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.79 E-value=3.3 Score=48.15 Aligned_cols=77 Identities=17% Similarity=0.166 Sum_probs=30.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 24 FLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELG 100 (535)
Q Consensus 24 rved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~ 100 (535)
|++.++..+...+......=.+++.++..+...=..++.++..++.+.+.++..+..+....+.-+..+..++.+|.
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~ 498 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLA 498 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33434444444333333333333333333333223334444444444444444444444333333333333333333
No 65
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.73 E-value=7.8 Score=47.88 Aligned_cols=32 Identities=13% Similarity=0.259 Sum_probs=15.1
Q ss_pred HHHHHHHhhhhh-cCCCCChhHHHHHHHHHHHH
Q 048095 396 RTCILLLEQLSN-IAPDINPQVRDEAMKMAGEW 427 (535)
Q Consensus 396 ~~CilLLE~L~~-~~p~i~~~vkeeA~~lA~~W 427 (535)
+.|+-.|+.++. +.|..-..+++.+.-+|..-
T Consensus 962 ~~~~~~l~~~~~~~~~~~~~~l~e~~~~~~~~i 994 (1201)
T PF12128_consen 962 RQWAPDLQELLDVLIPQQQQALIEQGRNIGNDI 994 (1201)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 334444555543 23443444555555555543
No 66
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.60 E-value=4 Score=49.21 Aligned_cols=125 Identities=12% Similarity=0.132 Sum_probs=56.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhh-hhhHHHHHhhhhhhhHH
Q 048095 61 QKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQQQLGL-AQSEEDLLKNSLKNSIE 139 (535)
Q Consensus 61 K~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~~~~~~-~~~~~~l~~~~~k~~v~ 139 (535)
+...+.+...++..+.....++.-|+.+...+....+-|...+..+.....-+.+.-..++. .-.++.|+.+..+.
T Consensus 1562 ~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qn--- 1638 (1758)
T KOG0994|consen 1562 KGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQN--- 1638 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 44444444444444444444444444444444444444444443333333333222222211 11333333333332
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHhHH
Q 048095 140 HWSQKLNLTKEELSLLQKSIRECKGELDSKERQLAVVQKRIGECNNELQLK 190 (535)
Q Consensus 140 ~~~~~~~~~~~eL~~~~k~i~e~~~EL~~Kek~le~~~k~~~~~~~~l~~k 190 (535)
+.+-.--++.-.+++.+-.+....++-..+.++.+..+++.+++.-+..
T Consensus 1639 --s~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~a 1687 (1758)
T KOG0994|consen 1639 --SAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAA 1687 (1758)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Confidence 2222333455566666666666666666677777766666665544433
No 67
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.31 E-value=6.5 Score=44.22 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 048095 18 KERQLRFLEKRIGESKGELALV 39 (535)
Q Consensus 18 te~dLerved~i~ElEkqle~L 39 (535)
+=.+|..+.+.+..++.++...
T Consensus 128 ~~~eL~~~k~EL~~lr~e~~~~ 149 (522)
T PF05701_consen 128 AVAELDSVKQELEKLRQELASA 149 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444
No 68
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.02 E-value=7.1 Score=45.98 Aligned_cols=101 Identities=17% Similarity=0.207 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 13 LKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSEL 92 (535)
Q Consensus 13 ~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El 92 (535)
..|..+..+++...-.+.|.+++.-...++|...+..|..+...-.++.++...+..+++.. +..|.+.+.+.
T Consensus 396 aql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~-------~~s~~~~~~~~ 468 (980)
T KOG0980|consen 396 AQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESA-------EQSIDDVEEEN 468 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHH
Confidence 34555555555555556666666666666666666666666555555555555554444444 44444555555
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 048095 93 QSKEIELGLLQKRVGECNCELECKQQQL 120 (535)
Q Consensus 93 ~~~eeEL~~lqk~l~E~~~el~~k~~~~ 120 (535)
..+...+..+++....+....++..+.+
T Consensus 469 ~~L~d~le~~~~~~~~~~~K~e~~~~~l 496 (980)
T KOG0980|consen 469 TNLNDQLEELQRAAGRAETKTESQAKAL 496 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5555555566665555555555555433
No 69
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=94.63 E-value=4.4 Score=38.81 Aligned_cols=114 Identities=18% Similarity=0.147 Sum_probs=65.7
Q ss_pred CCccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 048095 1 MKTRTNEIRGFNLKLQCKERQLRFLEKRIGESKGELALV-QKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELA 79 (535)
Q Consensus 1 ~~~~~~~~~~~~~KL~~te~dLerved~i~ElEkqle~L-aek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe 79 (535)
|....|.|....+++......+.++...+...+.--+.| ...|..++-+-..+...|++-..++..++..+...-..+.
T Consensus 1 m~~k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~ 80 (177)
T PF13870_consen 1 MRQKRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILT 80 (177)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778899999999999999999888888777655555 3455555555555555544444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 048095 80 LVEKEIEESNSELQSKEIELGLLQKRVGECNCELE 114 (535)
Q Consensus 80 ~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~ 114 (535)
-....+.....+......+|......+..+..++.
T Consensus 81 h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~ 115 (177)
T PF13870_consen 81 HVKEKLHFLSEELERLKQELKDREEELAKLREELY 115 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444443
No 70
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.39 E-value=5.7 Score=39.10 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=20.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 61 QKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQK 104 (535)
Q Consensus 61 K~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk 104 (535)
..+|-.+...+...+.....++..+.+...++......+..+++
T Consensus 67 ~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~ 110 (194)
T PF15619_consen 67 NEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKK 110 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444433
No 71
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.28 E-value=21 Score=45.20 Aligned_cols=167 Identities=19% Similarity=0.235 Sum_probs=87.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 048095 8 IRGFNLKLQCKERQLRFLEKRIGESKGELALV-------------QKEIEECNSELWCKEKELGLVQKRIRGCNGELQSK 74 (535)
Q Consensus 8 ~~~~~~KL~~te~dLerved~i~ElEkqle~L-------------aek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~ 74 (535)
++....+|......+..++..+..++++.+.. ..++..+...+..+...++.....+.+....+...
T Consensus 302 Le~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleel 381 (1486)
T PRK04863 302 LAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEEN 381 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666655544 23344444455555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH---HHHHHhhhh-hhhHHHHHhhhhhhhHHHHHHhhhhhHH
Q 048095 75 QGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCEL---ECKQQQLGL-AQSEEDLLKNSLKNSIEHWSQKLNLTKE 150 (535)
Q Consensus 75 qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el---~~k~~~~~~-~~~~~~l~~~~~k~~v~~~~~~~~~~~~ 150 (535)
+.++..++.++..++.++......++..+..+..+...+ +..+...|. -++...| +.-+..|......++.
T Consensus 382 eeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeL-----e~~LenF~aklee~e~ 456 (1486)
T PRK04863 382 EARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNA-----EDWLEEFQAKEQEATE 456 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHH-----HHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555554444433 333333331 1344443 3334455555555555
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 048095 151 ELSLLQKSIRECKGELDSKERQLAVVQKR 179 (535)
Q Consensus 151 eL~~~~k~i~e~~~EL~~Kek~le~~~k~ 179 (535)
++..+..........++.-.+.+.++...
T Consensus 457 qL~elE~kL~~lea~leql~~~~~~l~~~ 485 (1486)
T PRK04863 457 ELLSLEQKLSVAQAAHSQFEQAYQLVRKI 485 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555544444433
No 72
>PRK09039 hypothetical protein; Validated
Probab=94.23 E-value=8.7 Score=40.94 Aligned_cols=56 Identities=20% Similarity=0.159 Sum_probs=26.9
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 7 EIRGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQK 62 (535)
Q Consensus 7 ~~~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~ 62 (535)
+|.|+..+|++.+..+..+-+.+.==......++..+.++..+|..++..-..+..
T Consensus 47 ~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~ 102 (343)
T PRK09039 47 EISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQA 102 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544444444444444444444444444444444444433
No 73
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.19 E-value=15 Score=43.14 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHh
Q 048095 152 LSLLQKSIRECKGELDSKERQLAVVQKRIGECNNELQ 188 (535)
Q Consensus 152 L~~~~k~i~e~~~EL~~Kek~le~~~k~~~~~~~~l~ 188 (535)
|....++..+...++..-+.+...+.-.+..-++.++
T Consensus 801 l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le 837 (970)
T KOG0946|consen 801 LSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLE 837 (970)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 4444444444445555555444444444444443333
No 74
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=94.10 E-value=0.014 Score=68.85 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 048095 150 EELSLLQKSIRECKGELDSKERQLAVVQKRIGEC 183 (535)
Q Consensus 150 ~eL~~~~k~i~e~~~EL~~Kek~le~~~k~~~~~ 183 (535)
..++........+...+..-.-++.-|.+.+...
T Consensus 278 eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e 311 (859)
T PF01576_consen 278 EQLEEEEEAKSELERQLSKLNAELEQWKKKYEEE 311 (859)
T ss_dssp ----------------------------------
T ss_pred HHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444444444444444444455555565555553
No 75
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.02 E-value=15 Score=42.41 Aligned_cols=44 Identities=27% Similarity=0.280 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 048095 40 QKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEK 83 (535)
Q Consensus 40 aek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~ 83 (535)
..++.++..++..+..+++.+..++..++.++...+..+..+..
T Consensus 208 ~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 208 LSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444443333
No 76
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.70 E-value=5.5 Score=46.84 Aligned_cols=93 Identities=25% Similarity=0.267 Sum_probs=41.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 22 LRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGL 101 (535)
Q Consensus 22 Lerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~ 101 (535)
|+.++..-.+++..+.....+++..+.++.+.+..|..++.++...+.--+....++......++.++......+.++..
T Consensus 598 lE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~ 677 (769)
T PF05911_consen 598 LEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEE 677 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 33333333333333333344444444444444444444444444444444444444444444444444444445555555
Q ss_pred HHHHHhhhhhhHH
Q 048095 102 LQKRVGECNCELE 114 (535)
Q Consensus 102 lqk~l~E~~~el~ 114 (535)
++..+..+..||+
T Consensus 678 l~~Ki~~Le~Ele 690 (769)
T PF05911_consen 678 LQSKISSLEEELE 690 (769)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555554
No 77
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.67 E-value=17 Score=41.97 Aligned_cols=268 Identities=18% Similarity=0.215 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 048095 40 QKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQQQ 119 (535)
Q Consensus 40 aek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~~~ 119 (535)
+..+.++...+..|..-|..-..+....+.++.....++..--.++++.-.-....+.+|..+...+.+-..-|. .++.
T Consensus 348 s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qkll~-ekk~ 426 (786)
T PF05483_consen 348 SFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQKLLD-EKKQ 426 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 444455555555555555444444455555555555555555555555444444445555555554444443222 1222
Q ss_pred hhhhhhHHHHHhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHH---HHHHHHhhHHHhHHHhhhhh
Q 048095 120 LGLAQSEEDLLKNSLKNSIEHWSQKLNLTKEELSLLQKSIRECKGELDSKERQLAVV---QKRIGECNNELQLKENELNL 196 (535)
Q Consensus 120 ~~~~~~~~~l~~~~~k~~v~~~~~~~~~~~~eL~~~~k~i~e~~~EL~~Kek~le~~---~k~~~~~~~~l~~k~k~l~~ 196 (535)
+....-+.+..+..+.+.+.-...+.|-.+.+|..+..+-..+...++....+++-. +..+....+.|..-.+.+..
T Consensus 427 ~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQ 506 (786)
T PF05483_consen 427 FEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQ 506 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444445555556667776666666666666666655532 22333344444444444422
Q ss_pred HHHH----HHH-HHHHhhhHHH------HHHHHHhhhcccchhhhhhhhhhh-hhcCcccch-------hhhhHHHHHHH
Q 048095 197 VKTV----VEH-CLQKLNLKKE------ELSLLQKSNGEWNGQLECGERQLE-LRLEPESGI-------KDCSQQIELKE 257 (535)
Q Consensus 197 ~~~~----~~~-~~kele~k~~------~~~~~~~~~~~~~~~~e~~e~~~~-~~~e~~s~~-------~~~~~~~~~ke 257 (535)
.... ++. +.+--.+++. +|.-|+.-..-+.-.+++--..+. -+-+.+++. +....++.-+.
T Consensus 507 E~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~ 586 (786)
T PF05483_consen 507 ETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKE 586 (786)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhH
Confidence 1111 000 0000011110 111111111111111222111110 000111111 12223455566
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048095 258 KKLRQIQSSIEECEKELAIKERHISDYEEKLKAKEKLYDEIKKSIKELESA 308 (535)
Q Consensus 258 k~~~~~~~~~e~~~kel~~ke~~i~~~e~el~~~~k~~~~~~k~~ke~el~ 308 (535)
++++.+.+.+-.+.++++-+.+.|+..+.+=++..++.-.-.+.+..++.+
T Consensus 587 kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eik 637 (786)
T PF05483_consen 587 KQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIK 637 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777887777777777777777777664333333333333
No 78
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.50 E-value=10 Score=39.04 Aligned_cols=76 Identities=21% Similarity=0.269 Sum_probs=39.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 26 EKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQK 104 (535)
Q Consensus 26 ed~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk 104 (535)
++.|.++.++...++.+++.+..++..+..++...+.+|.+.+.+|..++.+|..+...|.+.+ ..+..+++.++.
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~---~~l~~raRAmq~ 112 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ---ELLKKRARAMQV 112 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 4444444444444444555555555555555555555555555555555555555555555444 234555555554
No 79
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.39 E-value=6.9 Score=36.65 Aligned_cols=89 Identities=20% Similarity=0.215 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 17 CKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKE 96 (535)
Q Consensus 17 ~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~e 96 (535)
++...|.|++..-+.++..+..|...+.........+..+.+..+..|..++.+++.+...++.+..++..+.++...+.
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLD 86 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHH
Q 048095 97 IELGLLQKR 105 (535)
Q Consensus 97 eEL~~lqk~ 105 (535)
..+...+..
T Consensus 87 k~lq~~q~k 95 (140)
T PF10473_consen 87 KELQKKQEK 95 (140)
T ss_pred HHHHHHHHH
Confidence 444444433
No 80
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=93.34 E-value=16 Score=40.56 Aligned_cols=137 Identities=15% Similarity=0.153 Sum_probs=62.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhHHHHHhhhhhhhHHH
Q 048095 61 QKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQQQLGLAQSEEDLLKNSLKNSIEH 140 (535)
Q Consensus 61 K~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~~~~~~~~~~~~l~~~~~k~~v~~ 140 (535)
-..|.++..++..++...+.+++.....+...+..---+..++..+.....|+++.+ ...+. ++.+|+.
T Consensus 294 s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~----~~~d~-------L~~q~~k 362 (622)
T COG5185 294 SQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQ----SNIDE-------LHKQLRK 362 (622)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH----hhHHH-------HHHHHHh
Confidence 445555555555555555555555555555554444445554444433333333222 11111 1111110
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHhHHHhhhhhHHHHHHHHHHHhhhHH
Q 048095 141 WSQKLNLTKEELSLLQKSIRECKGELDSKERQLAVVQKRIGECNNELQLKENELNLVKTVVEHCLQKLNLKK 212 (535)
Q Consensus 141 ~~~~~~~~~~eL~~~~k~i~e~~~EL~~Kek~le~~~k~~~~~~~~l~~k~k~l~~~~~~~~~~~kele~k~ 212 (535)
++ .-.++++..-..-.+.+.||.-.--+.+.+-+.|+.+.-+-+..=+.+...-.++++...++-.-.
T Consensus 363 --q~--Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~ 430 (622)
T COG5185 363 --QG--ISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSR 430 (622)
T ss_pred --cC--CCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 00 112223333333344556666666666666666666655555544444443344455555444433
No 81
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.24 E-value=12 Score=39.39 Aligned_cols=9 Identities=33% Similarity=0.612 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 048095 34 GELALVQKE 42 (535)
Q Consensus 34 kqle~Laek 42 (535)
.++..|...
T Consensus 156 ~~~~~L~~D 164 (325)
T PF08317_consen 156 ENLELLQED 164 (325)
T ss_pred HHHHHHHHH
Confidence 333333333
No 82
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.22 E-value=5.2 Score=42.18 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 15 LQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEK 55 (535)
Q Consensus 15 L~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~ 55 (535)
++..+.|...+...+.-+..-+..+.+++..+..++..+..
T Consensus 153 ~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~ 193 (312)
T smart00787 153 LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQ 193 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333334444444444444433
No 83
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.19 E-value=3.8 Score=38.15 Aligned_cols=85 Identities=16% Similarity=0.111 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 19 ERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIE 98 (535)
Q Consensus 19 e~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeE 98 (535)
..+..+|-..|.++-...+.-....+.+...+..+..++..+...+..++.++...++++..++.....++..+......
T Consensus 30 ~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~ 109 (151)
T PF11559_consen 30 EDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAK 109 (151)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444444444444444444444444444433333333333333333333333333333333333333
Q ss_pred HHHHH
Q 048095 99 LGLLQ 103 (535)
Q Consensus 99 L~~lq 103 (535)
+...+
T Consensus 110 ~k~~k 114 (151)
T PF11559_consen 110 LKQEK 114 (151)
T ss_pred HHHHH
Confidence 33333
No 84
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=93.15 E-value=4.2 Score=41.05 Aligned_cols=76 Identities=18% Similarity=0.140 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 048095 37 ALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCE 112 (535)
Q Consensus 37 e~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~e 112 (535)
+....-+.++..+...|..+-...-.++..+..+|..++..|..++.+-+.....+..+..++..+...+++..++
T Consensus 28 e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 28 ENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555555555555555555555555555555555555556666666666655555
No 85
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.13 E-value=12 Score=38.63 Aligned_cols=72 Identities=14% Similarity=0.148 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 048095 40 QKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNC 111 (535)
Q Consensus 40 aek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~ 111 (535)
...|.++..+...++.+|+.+..+|+++..++...+.++.....+|..++.++......|...+.-+...+|
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raR 108 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRAR 108 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555555555555555555555555555555544444333
No 86
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.11 E-value=5.8 Score=41.80 Aligned_cols=46 Identities=17% Similarity=0.048 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 21 QLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRG 66 (535)
Q Consensus 21 dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE 66 (535)
+++.+.....-+.+....+..-+..+......|..++..+++...+
T Consensus 152 ~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e 197 (312)
T smart00787 152 NLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDE 197 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444444444444444444555555555555555555555443333
No 87
>PRK09039 hypothetical protein; Validated
Probab=93.05 E-value=14 Score=39.33 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=11.6
Q ss_pred hCCCchhHHHHHhcccCCCC
Q 048095 362 KACDPALLVLDAMQGFYPPH 381 (535)
Q Consensus 362 ~A~DPAkLVLdai~~f~~~~ 381 (535)
.-.+|.++.....+.+.|..
T Consensus 303 ~Gi~~~ri~~~G~G~~~Pi~ 322 (343)
T PRK09039 303 LGVPADRLAAAGFGEFQPLD 322 (343)
T ss_pred CCCCHHHeEEEEeCCcCcCC
Confidence 34667777665555555543
No 88
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=93.02 E-value=2.4 Score=43.78 Aligned_cols=82 Identities=24% Similarity=0.230 Sum_probs=59.6
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 048095 7 EIRGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIE 86 (535)
Q Consensus 7 ~~~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIe 86 (535)
-||-+..||..++.-|..-+.+|.|+..|+..+++.+-|=.=.-.+..-.|.+.+++|.+++.-|+.+...+....+-|+
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQ 148 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQ 148 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHH
Confidence 48899999999999999999999999999999999885533333333444467777777777766666666655544444
Q ss_pred HH
Q 048095 87 ES 88 (535)
Q Consensus 87 e~ 88 (535)
.+
T Consensus 149 KY 150 (305)
T PF15290_consen 149 KY 150 (305)
T ss_pred HH
Confidence 33
No 89
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=92.57 E-value=34 Score=42.44 Aligned_cols=19 Identities=5% Similarity=0.345 Sum_probs=7.7
Q ss_pred CChhHHHHHHHHHHHHHHh
Q 048095 412 INPQVRDEAMKMAGEWKKK 430 (535)
Q Consensus 412 i~~~vkeeA~~lA~~WK~~ 430 (535)
+...|..--+.|-.+-...
T Consensus 1004 ~~r~I~~~s~~l~~~v~~~ 1022 (1201)
T PF12128_consen 1004 FDRRIKSQSRRLSREVSED 1022 (1201)
T ss_pred HhhHHHHHHHHHHHHHhhh
Confidence 3444444444444433333
No 90
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.42 E-value=25 Score=40.54 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=24.2
Q ss_pred hhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhHH
Q 048095 134 LKNSIEHWSQKLNLTKEELSLLQKSIRECKGELDSK 169 (535)
Q Consensus 134 ~k~~v~~~~~~~~~~~~eL~~~~k~i~e~~~EL~~K 169 (535)
++..+..+.+.+..|..++.+++...+.+.+.|..-
T Consensus 207 l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy 242 (617)
T PF15070_consen 207 LQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQY 242 (617)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444455566777777777777777777777766644
No 91
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=92.39 E-value=16 Score=38.24 Aligned_cols=95 Identities=19% Similarity=0.161 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 15 LQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQS 94 (535)
Q Consensus 15 L~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~ 94 (535)
++.-+.-+.-+...+.++....+.+..+...+...-..+.....++...+.++..+...+..++..+...-.+.-.....
T Consensus 8 ~~E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e 87 (294)
T COG1340 8 LDELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE 87 (294)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455667777777777778888888888888888888888888888888888888888888777777777777
Q ss_pred HHHHHHHHHHHHhhh
Q 048095 95 KEIELGLLQKRVGEC 109 (535)
Q Consensus 95 ~eeEL~~lqk~l~E~ 109 (535)
+...+..+....+.+
T Consensus 88 L~~~~~~l~e~~~~~ 102 (294)
T COG1340 88 LRKEYRELKEKRNEF 102 (294)
T ss_pred HHHHHHHHHHHhhhh
Confidence 777777777776655
No 92
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.29 E-value=9.6 Score=35.45 Aligned_cols=64 Identities=11% Similarity=0.138 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 40 QKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQ 103 (535)
Q Consensus 40 aek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lq 103 (535)
-..++.-....+.+...+..+...+..+...++.++..++.++.++...+.....+...+....
T Consensus 44 l~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~ 107 (151)
T PF11559_consen 44 LQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLE 107 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444444444444444443333333333333333
No 93
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.12 E-value=29 Score=40.60 Aligned_cols=56 Identities=23% Similarity=0.210 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 45 ECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELG 100 (535)
Q Consensus 45 Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~ 100 (535)
.++.++..+..+-+.++.++..+....+.-...+..++.++.+....+..++.+|.
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~ 512 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQ 512 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444443
No 94
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.96 E-value=7.9 Score=35.31 Aligned_cols=58 Identities=21% Similarity=0.355 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHhHHHhhhhhHHHHHHHHHHHh
Q 048095 151 ELSLLQKSIRECKGELDSKERQLAVVQKRIGECNNELQLKENELNLVKTVVEHCLQKL 208 (535)
Q Consensus 151 eL~~~~k~i~e~~~EL~~Kek~le~~~k~~~~~~~~l~~k~k~l~~~~~~~~~~~kel 208 (535)
++.+..+.+.....+++..+..++..=-++|+..++.+....-+.-+|..|+.+++.+
T Consensus 62 ~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~~l 119 (120)
T PF12325_consen 62 ELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQIDQL 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666667777888888899999999999999999988988999999998765
No 95
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.75 E-value=39 Score=41.36 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=17.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHH
Q 048095 259 KLRQIQSSIEECEKELAIKERHISDYEEKLKAK 291 (535)
Q Consensus 259 ~~~~~~~~~e~~~kel~~ke~~i~~~e~el~~~ 291 (535)
.++.+.-.++.-+..|+.+...|...+++++++
T Consensus 1711 ~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~v 1743 (1758)
T KOG0994|consen 1711 RLKDLELEYLRNEQALEDKAAELAGLEKRVESV 1743 (1758)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Confidence 344444444444445555555555556665554
No 96
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=91.71 E-value=20 Score=37.81 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 048095 44 EECNSELWCKEKELGLVQKRIRGCNGELQSKQGE 77 (535)
Q Consensus 44 ~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qke 77 (535)
..+..+...++..|......|.+++.++.....=
T Consensus 93 ~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeL 126 (306)
T PF04849_consen 93 QDLSERNEALEEQLGAALEQVEQLRHELSMKDEL 126 (306)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555544433
No 97
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.70 E-value=15 Score=36.33 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=6.7
Q ss_pred HHHHHhhhhHHHHHHHH
Q 048095 159 IRECKGELDSKERQLAV 175 (535)
Q Consensus 159 i~e~~~EL~~Kek~le~ 175 (535)
+......|+.++.||.+
T Consensus 152 l~~l~~~lE~keaqL~e 168 (201)
T PF13851_consen 152 LQALSEQLEKKEAQLNE 168 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444433
No 98
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=91.57 E-value=38 Score=40.84 Aligned_cols=82 Identities=13% Similarity=0.158 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 20 RQLRFLEKRIGESKGELALVQKEIEECNSELWCKEK---------ELGLVQKRIRGCNGELQSKQGELALVEKEIEESNS 90 (535)
Q Consensus 20 ~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~---------eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~ 90 (535)
.|++++.|.+.|++..-..|.+...=+..++..+.+ ++-.++.++..+..+....+.+++.+..++..++.
T Consensus 257 mDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~ 336 (1195)
T KOG4643|consen 257 MDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQV 336 (1195)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 467788999999988877776666555555555444 44444555555555555555666666665555555
Q ss_pred HHHHHHHHHHH
Q 048095 91 ELQSKEIELGL 101 (535)
Q Consensus 91 El~~~eeEL~~ 101 (535)
....+...+..
T Consensus 337 q~eqL~~~~el 347 (1195)
T KOG4643|consen 337 QKEQLDGQMEL 347 (1195)
T ss_pred HHHHhhhhhhH
Confidence 54444444433
No 99
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.53 E-value=37 Score=40.69 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=15.9
Q ss_pred ChHHHHHHHHHhhhhhhhHHHHHhcCCcccccchH
Q 048095 458 DGNELESLLDIVAHYRQTAKLRQSLGFADKVTVVP 492 (535)
Q Consensus 458 d~del~~Lv~~va~~~~~~~L~~sLGL~~K~~diV 492 (535)
|.+-+..++..+-..... .+.+|.+-++|.+.
T Consensus 855 D~e~l~~l~~~l~~i~~~---~~qiiIISH~eel~ 886 (908)
T COG0419 855 DEERLEKLAEILEELLSD---GRQIIIISHVEELK 886 (908)
T ss_pred CHHHHHHHHHHHHHHHhc---CCeEEEEeChHHHH
Confidence 555555554444332222 45566666666655
No 100
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.46 E-value=19 Score=42.24 Aligned_cols=78 Identities=10% Similarity=0.041 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 048095 43 IEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQQQL 120 (535)
Q Consensus 43 ~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~~~~ 120 (535)
+.++...+..+..+.+..-.++.+++.++..++..-+.+..+++++......+.++++.+-+.++..--.|-..|+++
T Consensus 560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~ 637 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREF 637 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence 444555555555555555555555555555555555666666666666666666666666555544444444444333
No 101
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=91.37 E-value=5.6 Score=41.80 Aligned_cols=113 Identities=16% Similarity=0.185 Sum_probs=48.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 048095 8 IRGFNLKLQCKERQLRFLEKRIGESKGELALV----QKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEK 83 (535)
Q Consensus 8 ~~~~~~KL~~te~dLerved~i~ElEkqle~L----aek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~ 83 (535)
+..+..||...+.+-..++.....+.....+. +.-+..|..++.....++..+..++.....+....+.+|..+..
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Lls 241 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLS 241 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666665555555554333333 11133344444444444444433333333333333333333333
Q ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 048095 84 EIEESNS-------ELQSKEIELGLLQKRVGECNCELECKQQQL 120 (535)
Q Consensus 84 eIee~e~-------El~~~eeEL~~lqk~l~E~~~el~~k~~~~ 120 (535)
+|-+++. +...+...|...+..=+.+..||..-+...
T Consensus 242 qivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY 285 (306)
T PF04849_consen 242 QIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKY 285 (306)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 333333333333333344444444333333
No 102
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.33 E-value=40 Score=40.64 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=24.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 048095 61 QKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCEL 113 (535)
Q Consensus 61 K~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el 113 (535)
+......+.++..+.+.+..+...+.+++++......+++.++..+++....+
T Consensus 254 k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~ 306 (1072)
T KOG0979|consen 254 KQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKV 306 (1072)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444455555555555555555554444433
No 103
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=91.18 E-value=4.3 Score=41.00 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=14.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 64 IRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLL 102 (535)
Q Consensus 64 IeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~l 102 (535)
|+.++..|...+.+-+.....|.....+...+..+++.+
T Consensus 62 In~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 62 INTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 104
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=90.92 E-value=0.068 Score=63.23 Aligned_cols=30 Identities=23% Similarity=0.209 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 048095 10 GFNLKLQCKERQLRFLEKRIGESKGELALV 39 (535)
Q Consensus 10 ~~~~KL~~te~dLerved~i~ElEkqle~L 39 (535)
.++.|++..+..+..+.....-+..++..|
T Consensus 191 El~~klee~er~~~el~~~k~kL~~E~~eL 220 (859)
T PF01576_consen 191 ELQAKLEESERQRNELTEQKAKLQSENSEL 220 (859)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433333333333333333
No 105
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.59 E-value=26 Score=37.19 Aligned_cols=43 Identities=23% Similarity=0.365 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 048095 74 KQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECK 116 (535)
Q Consensus 74 ~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k 116 (535)
++.++..++.++..++.++.....++...+..+......+...
T Consensus 142 ~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~ 184 (423)
T TIGR01843 142 LRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEAR 184 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333443333333333333333
No 106
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=90.57 E-value=53 Score=40.76 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=36.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHhHHHhhhhhHHHHHHHH
Q 048095 143 QKLNLTKEELSLLQKSIRECKGELDSKERQLAVVQKRIGECNNELQLKENELNLVKTVVEHC 204 (535)
Q Consensus 143 ~~~~~~~~eL~~~~k~i~e~~~EL~~Kek~le~~~k~~~~~~~~l~~k~k~l~~~~~~~~~~ 204 (535)
+++..+...|.-+.+-+..|...-+..-+ .-.+..|.+.++++.+.+..++..++.+
T Consensus 941 ~~ine~~s~l~~~~~~~~~~~~~~~~~~~-----~~~l~~~~e~l~~~~~~~~~~~~~l~~~ 997 (1294)
T KOG0962|consen 941 NDINEKVSLLHQIYKLNECFEQYGFDDLR-----IAQLSESEEHLEERDNEVNEIKQKIRNQ 997 (1294)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhhhc-----hHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 56666666666666655555444222222 4556667778888888888877766655
No 107
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=90.45 E-value=20 Score=35.62 Aligned_cols=99 Identities=20% Similarity=0.280 Sum_probs=64.9
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 048095 4 RTNEIRGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEK 83 (535)
Q Consensus 4 ~~~~~~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~ 83 (535)
++++|-=....|.+...++.-=...|..+..++.............+..+...+..-.-+++.++.++.....+...+..
T Consensus 8 k~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLre 87 (202)
T PF06818_consen 8 KSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLRE 87 (202)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhh
Confidence 56777777778888888877777777777777777766666666666666666655555666666666666665555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 048095 84 EIEESNSELQSKEIELGLL 102 (535)
Q Consensus 84 eIee~e~El~~~eeEL~~l 102 (535)
.+..++.++..+...+...
T Consensus 88 kl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 88 KLGQLEAELAELREELACA 106 (202)
T ss_pred hhhhhHHHHHHHHHHHHhh
Confidence 5555555555555555443
No 108
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.29 E-value=7.7 Score=40.85 Aligned_cols=12 Identities=25% Similarity=0.296 Sum_probs=7.2
Q ss_pred hHHHHHHHHhhh
Q 048095 394 IKRTCILLLEQL 405 (535)
Q Consensus 394 ~r~~CilLLE~L 405 (535)
+-.||-++|-.|
T Consensus 290 WT~AlK~lLtnl 301 (314)
T PF04111_consen 290 WTKALKYLLTNL 301 (314)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345676766655
No 109
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=90.18 E-value=29 Score=41.04 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=12.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 65 RGCNGELQSKQGELALVEKEIEESNSELQSKEIEL 99 (535)
Q Consensus 65 eE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL 99 (535)
..+...+..++.+++....++.+.+..+..+..+|
T Consensus 606 ~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL 640 (769)
T PF05911_consen 606 EELEMELASCQDQLESLKNQLKESEQKLEELQSEL 640 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 110
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.04 E-value=49 Score=39.55 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=25.7
Q ss_pred hhhcCcccchhhhhHHHHHHH------HHHHHHHHhH-HHHHHHHHHHHhhhhhHHHHHH
Q 048095 237 ELRLEPESGIKDCSQQIELKE------KKLRQIQSSI-EECEKELAIKERHISDYEEKLK 289 (535)
Q Consensus 237 ~~~~e~~s~~~~~~~~~~~ke------k~~~~~~~~~-e~~~kel~~ke~~i~~~e~el~ 289 (535)
+...+.|++++..+.+++-.| .|+.+.+... ..+.+++|.-..|+.+.++..+
T Consensus 455 dknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~ 514 (1243)
T KOG0971|consen 455 DKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVE 514 (1243)
T ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344555566666555444333 1333333322 2455556666566655555443
No 111
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=89.88 E-value=58 Score=40.11 Aligned_cols=8 Identities=13% Similarity=-0.255 Sum_probs=3.4
Q ss_pred HhhhCCCc
Q 048095 359 TLTKACDP 366 (535)
Q Consensus 359 AL~~A~DP 366 (535)
....|..|
T Consensus 852 ~e~~~ek~ 859 (1317)
T KOG0612|consen 852 REEIAEKN 859 (1317)
T ss_pred hhhhhhcc
Confidence 33444444
No 112
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.81 E-value=44 Score=38.57 Aligned_cols=64 Identities=20% Similarity=0.199 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHh--hHHHhHHHhhhhhHHHHHHHHHHHhhhHHHHHHHHH
Q 048095 156 QKSIRECKGELDSKERQLAVVQKRIGEC--NNELQLKENELNLVKTVVEHCLQKLNLKKEELSLLQ 219 (535)
Q Consensus 156 ~k~i~e~~~EL~~Kek~le~~~k~~~~~--~~~l~~k~k~l~~~~~~~~~~~kele~k~~~~~~~~ 219 (535)
++.+..+..++..-+.+++.++..+..- .+.+....+++..+.+.+..|..++.....+++.+.
T Consensus 390 ~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~ 455 (650)
T TIGR03185 390 QDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLK 455 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555432 234444444444444444444444444443333333
No 113
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=89.45 E-value=31 Score=36.39 Aligned_cols=58 Identities=14% Similarity=0.155 Sum_probs=39.4
Q ss_pred hhhhccCCCCCcchhhHHHHHhhhCChHHHHHHHHHhhcchhhhHHhHHHHhhhCCCc
Q 048095 309 KKELEQPKSLTDNEETRLLSLQSMNNGRSLQLILNQHLQKHDLIFGQISQTLTKACDP 366 (535)
Q Consensus 309 ekq~e~~~~~~~~~~~~L~~lC~~MD~~gL~~fv~~~~k~~~~lr~Ev~~AL~~A~DP 366 (535)
+.++++|.|.|..|++....--.+-.+.++..+|..-+.+++.||..++.+=+.-.-|
T Consensus 198 q~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k 255 (310)
T PF09755_consen 198 QEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEK 255 (310)
T ss_pred HHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447778888888877543222233456777777777778889999988877655544
No 114
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=89.37 E-value=17 Score=33.27 Aligned_cols=89 Identities=19% Similarity=0.200 Sum_probs=49.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 12 NLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSE 91 (535)
Q Consensus 12 ~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~E 91 (535)
..++.....++.++...+.....++..+...+..........+..|+.--....+.-..|.....++..+...|..++..
T Consensus 2 ~~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~ 81 (132)
T PF07926_consen 2 ESELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAE 81 (132)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677777777777777777776666666666666666664333333333344444444444444444444444
Q ss_pred HHHHHHHHH
Q 048095 92 LQSKEIELG 100 (535)
Q Consensus 92 l~~~eeEL~ 100 (535)
.......+.
T Consensus 82 ~~~a~~~l~ 90 (132)
T PF07926_consen 82 AESAKAELE 90 (132)
T ss_pred HHHHHHHHH
Confidence 444444443
No 115
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=89.28 E-value=15 Score=37.21 Aligned_cols=76 Identities=17% Similarity=0.158 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 16 QCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSE 91 (535)
Q Consensus 16 ~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~E 91 (535)
+++.+........-....+.++.+..+...+..+|..+..+++.++..+..++..+...+.++..++.+|++.+..
T Consensus 24 ~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 24 DQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444444444444444444444444444444444444444444444444444433
No 116
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.00 E-value=8.3 Score=40.63 Aligned_cols=6 Identities=33% Similarity=0.512 Sum_probs=0.0
Q ss_pred HHHHHH
Q 048095 15 LQCKER 20 (535)
Q Consensus 15 L~~te~ 20 (535)
++.+..
T Consensus 18 ~~~~~~ 23 (314)
T PF04111_consen 18 LEQAEK 23 (314)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 333333
No 117
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=88.99 E-value=46 Score=37.77 Aligned_cols=105 Identities=18% Similarity=0.181 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 17 CKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGEL-QSKQGELALVEKEIEESNSELQSK 95 (535)
Q Consensus 17 ~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eI-e~~qkeIe~le~eIee~e~El~~~ 95 (535)
.+...-.+=+..|.+++..+...-++.+-+..+=..|+.+|..++.....-.+.| ..+..++..+..-|++...+....
T Consensus 32 ~ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~ 111 (546)
T KOG0977|consen 32 PIRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKL 111 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3344444556777778888888888888888888888888887766655553333 345667777777777777777777
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhh
Q 048095 96 EIELGLLQKRVGECNCELECKQQQLG 121 (535)
Q Consensus 96 eeEL~~lqk~l~E~~~el~~k~~~~~ 121 (535)
+.++..+..++.++...++.+++...
T Consensus 112 e~ei~kl~~e~~elr~~~~~~~k~~~ 137 (546)
T KOG0977|consen 112 EIEITKLREELKELRKKLEKAEKERR 137 (546)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 88888888888777777777766553
No 118
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.76 E-value=3.2 Score=40.46 Aligned_cols=96 Identities=24% Similarity=0.314 Sum_probs=34.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 25 LEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQK 104 (535)
Q Consensus 25 ved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk 104 (535)
..+.+..+...+..+...-.+....+..+...+..+...+.+....|..++..+..+..+|..+..++..+...+..+++
T Consensus 72 le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~D 151 (194)
T PF08614_consen 72 LEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQD 151 (194)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555566666666666666666666666666666666666666666666666666666
Q ss_pred HHhhhhhhHHHHHHhh
Q 048095 105 RVGECNCELECKQQQL 120 (535)
Q Consensus 105 ~l~E~~~el~~k~~~~ 120 (535)
.+..+.-++...+..+
T Consensus 152 E~~~L~l~~~~~e~k~ 167 (194)
T PF08614_consen 152 ELQALQLQLNMLEEKL 167 (194)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666665555444
No 119
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.42 E-value=64 Score=38.68 Aligned_cols=38 Identities=11% Similarity=0.366 Sum_probs=22.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhH
Q 048095 247 KDCSQQIELKEKKLRQIQSSIEECEKELAIKERHISDY 284 (535)
Q Consensus 247 ~~~~~~~~~kek~~~~~~~~~e~~~kel~~ke~~i~~~ 284 (535)
.+...+|+...-.+++.+.+++--.+.+-.+..-|..+
T Consensus 493 ~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~Kf 530 (1243)
T KOG0971|consen 493 LDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKF 530 (1243)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34555666666666666666666666655555544444
No 120
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=88.42 E-value=67 Score=38.87 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=37.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 28 RIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQ 93 (535)
Q Consensus 28 ~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~ 93 (535)
...-++.++..+...|.-.+.+++.++.++.......++....+....+....+...+...+.+..
T Consensus 630 ~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~ 695 (1072)
T KOG0979|consen 630 LDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKE 695 (1072)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333444455555566666666666666666666666666666666666666655554444444333
No 121
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=88.38 E-value=53 Score=37.67 Aligned_cols=47 Identities=26% Similarity=0.290 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhhHHHhHHHhhhhhHHHHHHHHHHHhhhHHHHHHHHH
Q 048095 172 QLAVVQKRIGECNNELQLKENELNLVKTVVEHCLQKLNLKKEELSLLQ 219 (535)
Q Consensus 172 ~le~~~k~~~~~~~~l~~k~k~l~~~~~~~~~~~kele~k~~~~~~~~ 219 (535)
..+.+...|.-..+++..+...+...++.++.. .+.+-.++++.-|.
T Consensus 311 e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 311 EREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHH
Confidence 334444444444444444444444444444444 44444444444444
No 122
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=88.30 E-value=31 Score=34.90 Aligned_cols=8 Identities=38% Similarity=0.380 Sum_probs=3.5
Q ss_pred hHHHHhhh
Q 048095 355 QISQTLTK 362 (535)
Q Consensus 355 Ev~~AL~~ 362 (535)
++.+||..
T Consensus 196 ~isaALgy 203 (302)
T PF10186_consen 196 EISAALGY 203 (302)
T ss_pred HHHHHHHH
Confidence 34444444
No 123
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=88.23 E-value=18 Score=39.02 Aligned_cols=105 Identities=18% Similarity=0.315 Sum_probs=61.7
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 048095 4 RTNEIRGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEK 83 (535)
Q Consensus 4 ~~~~~~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~ 83 (535)
|+.. ++-..-|+++..-...+.....+...+++.+...+...-..+...|+-| .++++..-.++...+.++..++.
T Consensus 212 ~~d~-kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~i---N~qle~l~~eYr~~~~~ls~~~~ 287 (359)
T PF10498_consen 212 RADA-KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYI---NNQLEPLIQEYRSAQDELSEVQE 287 (359)
T ss_pred cCCc-chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHH
Confidence 3443 6667778888888888888888888888887777666666666666554 23444444455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 048095 84 EIEESNSELQSKEIELGLLQKRVGECNCE 112 (535)
Q Consensus 84 eIee~e~El~~~eeEL~~lqk~l~E~~~e 112 (535)
+.++..........+|..+...+...-.+
T Consensus 288 ~y~~~s~~V~~~t~~L~~IseeLe~vK~e 316 (359)
T PF10498_consen 288 KYKQASEGVSERTRELAEISEELEQVKQE 316 (359)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554444444444444444443333333
No 124
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=88.16 E-value=56 Score=37.74 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=31.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 24 FLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIR 65 (535)
Q Consensus 24 rved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIe 65 (535)
...+.+..+..++.+|.++.......+..|+.+|..++.++.
T Consensus 26 ~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~ 67 (617)
T PF15070_consen 26 QWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMA 67 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356777788888888888888888888888888866644443
No 125
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=88.12 E-value=26 Score=36.30 Aligned_cols=77 Identities=17% Similarity=0.122 Sum_probs=58.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 24 FLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELG 100 (535)
Q Consensus 24 rved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~ 100 (535)
++-..|.|++.+++.|.......+=++..+++.|+.-++..++.+.++..+.++...+...-++++.....+.-+|.
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq 91 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQ 91 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHh
Confidence 45567889999999998888888888999999988888888888888888877777666666655555444444433
No 126
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=87.54 E-value=23 Score=32.47 Aligned_cols=45 Identities=31% Similarity=0.259 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 048095 45 ECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESN 89 (535)
Q Consensus 45 Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e 89 (535)
+....+..+..++..++..|.+++.........+...+..+..-+
T Consensus 56 ~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk 100 (132)
T PF07926_consen 56 EDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQK 100 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344444555555555555555555555555555555554444433
No 127
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=87.05 E-value=25 Score=34.51 Aligned_cols=83 Identities=12% Similarity=0.162 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 048095 40 QKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQQQ 119 (535)
Q Consensus 40 aek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~~~ 119 (535)
..++..+..+...++..+.+......+.+..|..++..|..++...............++..++..++.+..++.+.+.+
T Consensus 102 k~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 102 KDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666655544444445555555555555555555555556666677777777777777777776666
Q ss_pred hhh
Q 048095 120 LGL 122 (535)
Q Consensus 120 ~~~ 122 (535)
|..
T Consensus 182 F~~ 184 (190)
T PF05266_consen 182 FQS 184 (190)
T ss_pred HHH
Confidence 643
No 128
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=86.64 E-value=1e+02 Score=39.00 Aligned_cols=25 Identities=8% Similarity=-0.053 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Q 048095 15 LQCKERQLRFLEKRIGESKGELALV 39 (535)
Q Consensus 15 L~~te~dLerved~i~ElEkqle~L 39 (535)
|...=.+++++++.+.+++..+..|
T Consensus 225 l~e~~~~~~~~~~~le~l~~~~~~l 249 (1353)
T TIGR02680 225 VADALEQLDEYRDELERLEALERAL 249 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666555555
No 129
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=86.60 E-value=62 Score=38.03 Aligned_cols=175 Identities=22% Similarity=0.246 Sum_probs=95.6
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHH---------
Q 048095 5 TNEIRGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGE-LQSK--------- 74 (535)
Q Consensus 5 ~~~~~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~e-Ie~~--------- 74 (535)
.++|..+..+|.+++.+-..+-..+.+...+++.-+..+.+....+..|-..+..+..-....+.. ....
T Consensus 264 ~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d 343 (717)
T PF09730_consen 264 LSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHED 343 (717)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccc
Confidence 456777777777777777777777777777777776666666666666666666664421111100 0000
Q ss_pred ----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhHHHHHhhhhhhhHHHHHHhhhh
Q 048095 75 ----Q---GELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQQQLGLAQSEEDLLKNSLKNSIEHWSQKLNL 147 (535)
Q Consensus 75 ----q---keIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~~~~~~~~~~~~l~~~~~k~~v~~~~~~~~~ 147 (535)
. ..++.++..+...-.+...+..+|+.+...++.+.. ..+.....|..++..
T Consensus 344 ~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~---------------------~~~~ek~~~~~e~q~ 402 (717)
T PF09730_consen 344 GDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEE---------------------RYKQEKDRLESEVQN 402 (717)
T ss_pred cchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
Confidence 0 001112222222222222222222222222211111 122222344444555
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHhHHHhhhhhHHHH
Q 048095 148 TKEELSLLQKSIRECKGELDSKERQLAVVQKRIGECNNELQLKENELNLVKTV 200 (535)
Q Consensus 148 ~~~eL~~~~k~i~e~~~EL~~Kek~le~~~k~~~~~~~~l~~k~k~l~~~~~~ 200 (535)
...++.+..+..++-...+..-+++|..+....+.....|.+-.-+|..+.+.
T Consensus 403 L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEe 455 (717)
T PF09730_consen 403 LKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEE 455 (717)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 55667777777766666777778888888888888888888877777776665
No 130
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.58 E-value=13 Score=37.00 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHHHHHHHHhHH
Q 048095 13 LKLQCKERQLRFLEKRIGESK 33 (535)
Q Consensus 13 ~KL~~te~dLerved~i~ElE 33 (535)
.+|...+++|..+++.+.++.
T Consensus 93 ~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 131
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=86.20 E-value=77 Score=37.26 Aligned_cols=102 Identities=23% Similarity=0.101 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 19 ERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIE 98 (535)
Q Consensus 19 e~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeE 98 (535)
..-..+=+..+.|--..-..+..++.++..++..+...+...+.+.+.+......+....+.++.+...++.+++....+
T Consensus 12 ~~g~~~Ee~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~r 91 (717)
T PF09730_consen 12 KDGEEREESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFR 91 (717)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777777777777777777777777777777777777777777777777777777777777777666666
Q ss_pred HHHHHHHHhhhhhhHHHHHHhh
Q 048095 99 LGLLQKRVGECNCELECKQQQL 120 (535)
Q Consensus 99 L~~lqk~l~E~~~el~~k~~~~ 120 (535)
=.++-.++.++..|-+|-+|..
T Consensus 92 E~rll~dyselEeENislQKqv 113 (717)
T PF09730_consen 92 EARLLQDYSELEEENISLQKQV 113 (717)
T ss_pred HHHHhhhhHHHHHHHHHHHHHH
Confidence 6666666666666666666433
No 132
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=85.82 E-value=9 Score=31.91 Aligned_cols=68 Identities=21% Similarity=0.314 Sum_probs=42.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 25 LEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSEL 92 (535)
Q Consensus 25 ved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El 92 (535)
+.+.|.|-..++..|...-..+....-.....+..++..+.+.+..+..+...++..+.++..++..+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666666666666666666666666666666666666666666666666666666555443
No 133
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.76 E-value=39 Score=33.38 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhhHHHhH
Q 048095 170 ERQLAVVQKRIGECNNELQL 189 (535)
Q Consensus 170 ek~le~~~k~~~~~~~~l~~ 189 (535)
|+.+..+...++....+|.+
T Consensus 149 EkKl~~l~~~lE~keaqL~e 168 (201)
T PF13851_consen 149 EKKLQALSEQLEKKEAQLNE 168 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555553
No 134
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=85.62 E-value=27 Score=37.58 Aligned_cols=53 Identities=23% Similarity=0.370 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 40 QKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSEL 92 (535)
Q Consensus 40 aek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El 92 (535)
..++..+..+|......|.+++....+..+.+....+++..+..+++..+.++
T Consensus 265 N~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~em 317 (359)
T PF10498_consen 265 NNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEM 317 (359)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444333
No 135
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.61 E-value=83 Score=37.07 Aligned_cols=53 Identities=9% Similarity=0.104 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 53 KEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKR 105 (535)
Q Consensus 53 LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~ 105 (535)
...--.+++..+..++.+++..-.++..++++++.++..-..+.+++....+.
T Consensus 556 ~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~ 608 (717)
T PF10168_consen 556 QDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDK 608 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555566666666666666666666666555554444444444444333
No 136
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=85.57 E-value=88 Score=37.37 Aligned_cols=58 Identities=17% Similarity=0.269 Sum_probs=37.3
Q ss_pred HhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHhHHHhhhhhHHHH
Q 048095 143 QKLNLTKEELSLLQKSIRECKGELDSKERQLAVVQKRIGECNNELQLKENELNLVKTV 200 (535)
Q Consensus 143 ~~~~~~~~eL~~~~k~i~e~~~EL~~Kek~le~~~k~~~~~~~~l~~k~k~l~~~~~~ 200 (535)
.++.--++++++.++++.+...+......+++.++..-..-....++..+.+.+.+..
T Consensus 445 ~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~E 502 (980)
T KOG0980|consen 445 RKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQE 502 (980)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5566666788888888876666666666666666666655555555555555554443
No 137
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=85.55 E-value=39 Score=33.30 Aligned_cols=77 Identities=18% Similarity=0.124 Sum_probs=44.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 29 IGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALV---EKEIEESNSELQSKEIELGLLQKR 105 (535)
Q Consensus 29 i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~l---e~eIee~e~El~~~eeEL~~lqk~ 105 (535)
|.+++..-..|+..+..++..+...+.-=..+..+|..+...+.+.+..+..+ ..++++++......+.+-+.+..+
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq 89 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQ 89 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666666655666666666666666666555555 555555555554444444444443
No 138
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=85.52 E-value=40 Score=33.38 Aligned_cols=103 Identities=17% Similarity=0.282 Sum_probs=55.7
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH-------HHHH
Q 048095 6 NEIRGFNLKLQCKERQLRFLEKRIGESKGELALVQK--------------EIEECNSELWCKEKELGLV-------QKRI 64 (535)
Q Consensus 6 ~~~~~~~~KL~~te~dLerved~i~ElEkqle~Lae--------------k~~Elk~EL~~LE~eLeeL-------K~eI 64 (535)
..+...|.++...+.+|+|-++.+.....++..... +-......+..++.++.+. -+.-
T Consensus 4 ~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~ 83 (205)
T KOG1003|consen 4 ADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKY 83 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888888887777777766622 3333334444444444322 2333
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048095 65 RGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGE 108 (535)
Q Consensus 65 eE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E 108 (535)
+++-..+.....+++..+...+...+....+..+++.+..++..
T Consensus 84 eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~ 127 (205)
T KOG1003|consen 84 EEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKS 127 (205)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 34444444444444444444444444444555555544444433
No 139
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=85.49 E-value=13 Score=35.30 Aligned_cols=65 Identities=23% Similarity=0.289 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 048095 19 ERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKEL--GLVQKRIRGCNGELQSKQGELALVEK 83 (535)
Q Consensus 19 e~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eL--eeLK~eIeE~e~eIe~~qkeIe~le~ 83 (535)
..++..+...|.++..++..+...+..+..++..+...+ .++...|.+++.++..++..+..+..
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555555555555555555 45566666666665555555555554
No 140
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=84.70 E-value=11 Score=37.96 Aligned_cols=78 Identities=23% Similarity=0.158 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 048095 40 QKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQ 117 (535)
Q Consensus 40 aek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~ 117 (535)
.+.|.+|+..+.++.++-+++..+..++++++...+..+..++.+...++..+....-+...+.+.+.++.-.+++-+
T Consensus 134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e 211 (290)
T COG4026 134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPE 211 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchH
Confidence 344555555555555555555555555555555555555555555544444444444455555555555555444433
No 141
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=84.34 E-value=81 Score=35.89 Aligned_cols=51 Identities=22% Similarity=0.205 Sum_probs=29.9
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 7 EIRGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKEL 57 (535)
Q Consensus 7 ~~~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eL 57 (535)
.|......|+.++.++.++.+.+.++...-..-...+.++...+..+.+.+
T Consensus 102 ~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~l 152 (560)
T PF06160_consen 102 AIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKEL 152 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666666666555555555555555555555555
No 142
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=84.13 E-value=12 Score=37.72 Aligned_cols=74 Identities=27% Similarity=0.184 Sum_probs=37.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 25 LEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIE 98 (535)
Q Consensus 25 ved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeE 98 (535)
+.....++..+++.++....++..++.+++.++++++.++..++.+.+.+...+..+..+...++.+...++..
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 34444555555555555555555555555555555555555555555555555444444444444444444333
No 143
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=84.11 E-value=21 Score=40.72 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhhhhhhHH
Q 048095 97 IELGLLQKRVGECNCELE 114 (535)
Q Consensus 97 eEL~~lqk~l~E~~~el~ 114 (535)
.+++.+...++.+.++|.
T Consensus 474 rei~~~~~~I~~L~~~L~ 491 (652)
T COG2433 474 REIRARDRRIERLEKELE 491 (652)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 144
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=83.99 E-value=26 Score=29.92 Aligned_cols=48 Identities=21% Similarity=0.273 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 048095 70 ELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQ 117 (535)
Q Consensus 70 eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~ 117 (535)
.+.....-+..+...|...+..+.....++......+.+...+....+
T Consensus 46 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e 93 (123)
T PF02050_consen 46 QLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLE 93 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444333
No 145
>PRK10869 recombination and repair protein; Provisional
Probab=83.79 E-value=85 Score=35.69 Aligned_cols=28 Identities=14% Similarity=0.124 Sum_probs=13.9
Q ss_pred HHHhHHHhhhhhHHHHHHHHHHHhhhHH
Q 048095 185 NELQLKENELNLVKTVVEHCLQKLNLKK 212 (535)
Q Consensus 185 ~~l~~k~k~l~~~~~~~~~~~kele~k~ 212 (535)
+.++..++++....+.+..+...|..++
T Consensus 341 ~~l~~Le~e~~~l~~~l~~~A~~LS~~R 368 (553)
T PRK10869 341 DDLETLALAVEKHHQQALETAQKLHQSR 368 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555555
No 146
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=83.25 E-value=22 Score=32.78 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=37.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 048095 10 GFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEES 88 (535)
Q Consensus 10 ~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~ 88 (535)
...+.|++.-.-|...++.+. ..++.+-.++++..+-......++.+++..+..+..++...+..+..++.+|..+
T Consensus 47 ~v~kql~~vs~~l~~tKkhLs---qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 47 SVSKQLEQVSESLSSTKKHLS---QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555444444332 4444455555555544455555555555555555555555555555555554443
No 147
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.09 E-value=1.1e+02 Score=36.41 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=6.6
Q ss_pred chhhhhhhHHHHHHHH
Q 048095 7 EIRGFNLKLQCKERQL 22 (535)
Q Consensus 7 ~~~~~~~KL~~te~dL 22 (535)
+.+|...|+-.-..+.
T Consensus 626 ele~~i~k~ls~~~ee 641 (970)
T KOG0946|consen 626 ELEGLIAKLLSSKTEE 641 (970)
T ss_pred HHHHHHHHHhcCCCcc
Confidence 3444444444433333
No 148
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=83.02 E-value=68 Score=34.01 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 56 ELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLL 102 (535)
Q Consensus 56 eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~l 102 (535)
....+..++...+.++...+.++..++..+...+..+.....++...
T Consensus 138 ~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~ 184 (423)
T TIGR01843 138 RKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEAR 184 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444
No 149
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=83.00 E-value=76 Score=34.59 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=16.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhhHHHhHHHhhhhh
Q 048095 161 ECKGELDSKERQLAVVQKRIGECNNELQLKENELNL 196 (535)
Q Consensus 161 e~~~EL~~Kek~le~~~k~~~~~~~~l~~k~k~l~~ 196 (535)
....+|+..-++.+-..+.+..+.|..++..++|..
T Consensus 186 ~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~ 221 (499)
T COG4372 186 SQVLDLKLRSAQIEQEAQNLATRANAAQARTEELAR 221 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444445555555555533
No 150
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=82.94 E-value=73 Score=35.87 Aligned_cols=179 Identities=15% Similarity=0.148 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhh
Q 048095 44 EECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQQQLGLA 123 (535)
Q Consensus 44 ~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~~~~~~~ 123 (535)
....+++.....+...+-++|...+.++..+.-+.+.+..-+..+...-....-++..+++...|++-.+.-.+.++...
T Consensus 222 ~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 222 QSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333333444444444444444444444444444444455555555555555555555555554444333221
Q ss_pred --hhHHHHHhhhhhhhHHHHHHhhhhhHHHHHHHHH--HHHHHHhhhhHHHHHHHHHHHHHHHhhHHHhHHHhhhhhHHH
Q 048095 124 --QSEEDLLKNSLKNSIEHWSQKLNLTKEELSLLQK--SIRECKGELDSKERQLAVVQKRIGECNNELQLKENELNLVKT 199 (535)
Q Consensus 124 --~~~~~l~~~~~k~~v~~~~~~~~~~~~eL~~~~k--~i~e~~~EL~~Kek~le~~~k~~~~~~~~l~~k~k~l~~~~~ 199 (535)
-+.-+++....-..--+|...=...++=-...++ ++++-...+.-++ |+-+++|=.|.+.+..-+.+....-+
T Consensus 302 rs~~~p~~~s~~~~~~~~~fp~~~~aae~i~lt~r~~~qldee~s~~~t~~---~~eq~~I~e~ve~i~~ts~q~a~l~~ 378 (596)
T KOG4360|consen 302 RSCDAPKLISQEALSHGHHFPQLSLAAEKIELTMRKNLQLDEEASQLDTLE---DEEQKRIFETVEQINETSQQMAELPE 378 (596)
T ss_pred ccCCCcchhHHHHHHhhhhCChhhHHHHHHHHhhhhhhccccccccCCccc---hHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1223333222221111232111111111111122 2223233333333 77889999998888888887766555
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhhccc
Q 048095 200 VVEHCLQKLNLKKEELSLLQKSNGEW 225 (535)
Q Consensus 200 ~~~~~~kele~k~~~~~~~~~~~~~~ 225 (535)
...-|...-++-...|.-++.+...+
T Consensus 379 ~l~i~~~ny~~~~~tv~~~~v~tp~l 404 (596)
T KOG4360|consen 379 VLVIPGSNYSSQQQTVARLQVQTPKL 404 (596)
T ss_pred cccCCcchhhhhhhhhhhhhccchhH
Confidence 54445444444444555555544433
No 151
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=82.88 E-value=58 Score=33.11 Aligned_cols=82 Identities=17% Similarity=0.233 Sum_probs=42.6
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 048095 6 NEIRGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEI 85 (535)
Q Consensus 6 ~~~~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eI 85 (535)
+.++++...+..+...+.-++..+..+...++.|..+..........+.............+...|......|..+...+
T Consensus 31 ~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~ 110 (264)
T PF06008_consen 31 NQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQV 110 (264)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555554444444444455555555555444444444
Q ss_pred HH
Q 048095 86 EE 87 (535)
Q Consensus 86 ee 87 (535)
..
T Consensus 111 ~~ 112 (264)
T PF06008_consen 111 ES 112 (264)
T ss_pred HH
Confidence 33
No 152
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=82.72 E-value=0.39 Score=55.78 Aligned_cols=27 Identities=4% Similarity=-0.151 Sum_probs=18.5
Q ss_pred CCcccccchHHHhhhc-Cchhhhhhhhh
Q 048095 483 GFADKVTVVPWSSIGM-DQAENSRMNHG 509 (535)
Q Consensus 483 GL~~K~~diV~~LI~~-gqieAv~~~~~ 509 (535)
+|+..+++.|+.-|.. |+|+|+=-|.+
T Consensus 687 ~~~~~~~~~i~~~v~~~~siP~FLaalT 714 (722)
T PF05557_consen 687 EFSPELEDLIEFWVEERNSIPAFLAALT 714 (722)
T ss_dssp CCHHCTHHHHHHHTTTS--HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCChhHHHHHHH
Confidence 5777889999977765 48998755543
No 153
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=82.68 E-value=40 Score=34.02 Aligned_cols=74 Identities=14% Similarity=0.079 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 19 ERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSEL 92 (535)
Q Consensus 19 e~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El 92 (535)
...++.+.+........-...+.++.....+-..+..++..+..+++.++.....++..+...+.++.+++..+
T Consensus 20 a~~~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi 93 (251)
T PF11932_consen 20 AATLDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQI 93 (251)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666555555555566666666666666666666666666666655555555555555555554443
No 154
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.65 E-value=1.1e+02 Score=36.21 Aligned_cols=105 Identities=14% Similarity=0.200 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhhHHHhHHHhhhhhHHHHHHHHHHHhhhHHHHHHHHHhhhcccch---hhhhhhhhhh-hhcCcccchh
Q 048095 172 QLAVVQKRIGECNNELQLKENELNLVKTVVEHCLQKLNLKKEELSLLQKSNGEWNG---QLECGERQLE-LRLEPESGIK 247 (535)
Q Consensus 172 ~le~~~k~~~~~~~~l~~k~k~l~~~~~~~~~~~kele~k~~~~~~~~~~~~~~~~---~~e~~e~~~~-~~~e~~s~~~ 247 (535)
.++++.+..+..+.+..-+.-.+...+..+-..+-|=.....++++-+...++-.. .|+..-...+ ++.-++++..
T Consensus 473 ~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqld 552 (1118)
T KOG1029|consen 473 EIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLD 552 (1118)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555444444444333333333333322333345555554444444 1222211122 3444455566
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 048095 248 DCSQQIELKEKKLRQIQSSIEECEKELAI 276 (535)
Q Consensus 248 ~~~~~~~~kek~~~~~~~~~e~~~kel~~ 276 (535)
+..+|.++|-.++..|++.++++...+-.
T Consensus 553 elskE~esk~~eidi~n~qlkelk~~~~~ 581 (1118)
T KOG1029|consen 553 ELSKETESKLNEIDIFNNQLKELKEDVNS 581 (1118)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 77778888888888888888888776543
No 155
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=82.51 E-value=82 Score=34.59 Aligned_cols=93 Identities=17% Similarity=0.114 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 13 LKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSEL 92 (535)
Q Consensus 13 ~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El 92 (535)
.+|-+.+..|..-+.....+..|...+...++.++..+..+|.+|+.|+.+...+..+.-+....-..+...+...++..
T Consensus 13 qr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~ 92 (459)
T KOG0288|consen 13 QRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLR 92 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666777777777788888888889999999999988888888887777777777777777777666
Q ss_pred HHHHHHHHHHHHH
Q 048095 93 QSKEIELGLLQKR 105 (535)
Q Consensus 93 ~~~eeEL~~lqk~ 105 (535)
-....++..++.+
T Consensus 93 ~r~~~eir~~~~q 105 (459)
T KOG0288|consen 93 IRSLNEIRELREQ 105 (459)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666555443
No 156
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=81.75 E-value=13 Score=35.25 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=42.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 048095 8 IRGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQS 73 (535)
Q Consensus 8 ~~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~ 73 (535)
|...+..+...+++|.++.+.+.-+.+++....+.+.++...|+.+...++.+-+.+.-...+...
T Consensus 46 id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~q 111 (157)
T COG3352 46 IDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQ 111 (157)
T ss_pred HHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHH
Confidence 455556666667777776666666666666667777777777777766666666666555554433
No 157
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=81.75 E-value=31 Score=39.49 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 048095 42 EIEECNSELWCKEKELGLVQKRIRGCNGELQSKQG 76 (535)
Q Consensus 42 k~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qk 76 (535)
..+.+..+...|+..+.+++..|+.++.+++...+
T Consensus 430 ~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 430 TVERLEEENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 158
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=81.62 E-value=56 Score=32.11 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=27.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 11 FNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKEL 57 (535)
Q Consensus 11 ~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eL 57 (535)
++.-+.+.+.+|..++..+..+-.....+..+|.++...+...+...
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A 74 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQA 74 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555666666666666666666666666666666555
No 159
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.36 E-value=30 Score=34.45 Aligned_cols=29 Identities=31% Similarity=0.290 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 048095 85 IEESNSELQSKEIELGLLQKRVGECNCEL 113 (535)
Q Consensus 85 Iee~e~El~~~eeEL~~lqk~l~E~~~el 113 (535)
+.+++.+...+..++..++..+..+..++
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444443333333333
No 160
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=81.25 E-value=6.1 Score=46.05 Aligned_cols=74 Identities=16% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 048095 40 QKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCEL 113 (535)
Q Consensus 40 aek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el 113 (535)
.+++..+..++..++..+..+..++......+..++..+......+..++..+.....+.+.+...+..+-.+.
T Consensus 356 ~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~ 429 (722)
T PF05557_consen 356 TEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEE 429 (722)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555544
No 161
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=81.18 E-value=1.4e+02 Score=36.36 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=17.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 048095 8 IRGFNLKLQCKERQLRFLEKRIGESKGELALV 39 (535)
Q Consensus 8 ~~~~~~KL~~te~dLerved~i~ElEkqle~L 39 (535)
|+-+...|+..-.+|-+.+..|..++..++.+
T Consensus 186 ir~LrqElEEK~enll~lr~eLddleae~~kl 217 (1195)
T KOG4643|consen 186 IRTLRQELEEKFENLLRLRNELDDLEAEISKL 217 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555666666666665555
No 162
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=81.09 E-value=67 Score=32.67 Aligned_cols=105 Identities=18% Similarity=0.199 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 13 LKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSEL 92 (535)
Q Consensus 13 ~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El 92 (535)
.+|.+.+.+..+....+.+-+.....|..+......+-..|+..-.++...+..+.........+-..+..++.++...+
T Consensus 12 ~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i 91 (246)
T PF00769_consen 12 ERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEI 91 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544445544444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHH
Q 048095 93 QSKEIELGLLQKRVGECNCELECKQ 117 (535)
Q Consensus 93 ~~~eeEL~~lqk~l~E~~~el~~k~ 117 (535)
..+..+..........+..+|...+
T Consensus 92 ~~l~ee~~~ke~Ea~~lq~el~~ar 116 (246)
T PF00769_consen 92 ARLEEESERKEEEAEELQEELEEAR 116 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444333
No 163
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=80.45 E-value=48 Score=37.26 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 43 IEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGL 101 (535)
Q Consensus 43 ~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~ 101 (535)
.+..+.++.....+|+....+......++..+-.+|-.+..+|..+..+......-|..
T Consensus 207 lrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~ 265 (596)
T KOG4360|consen 207 LRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQA 265 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333334444444444333333333333333
No 164
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=80.43 E-value=62 Score=31.81 Aligned_cols=85 Identities=20% Similarity=0.130 Sum_probs=41.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 23 RFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLL 102 (535)
Q Consensus 23 erved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~l 102 (535)
-++.+....+-...+.+..++.+-..+...++..+.++...|.+++.....+...-+...++|...++....+.+++...
T Consensus 99 L~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 99 LSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENA 178 (190)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334334444444444444444444444555555555555555555554455455555555555555555555555555
Q ss_pred HHHHh
Q 048095 103 QKRVG 107 (535)
Q Consensus 103 qk~l~ 107 (535)
...+.
T Consensus 179 e~~F~ 183 (190)
T PF05266_consen 179 ELEFQ 183 (190)
T ss_pred HHHHH
Confidence 44443
No 165
>PRK11281 hypothetical protein; Provisional
Probab=80.05 E-value=1.3e+02 Score=37.40 Aligned_cols=21 Identities=5% Similarity=-0.064 Sum_probs=13.8
Q ss_pred ccchHHHhhhcC-chhhhhhhh
Q 048095 488 VTVVPWSSIGMD-QAENSRMNH 508 (535)
Q Consensus 488 ~~diV~~LI~~g-qieAv~~~~ 508 (535)
+|-+.-.|+-.| ++-|..++.
T Consensus 695 ~P~~l~~l~~~GY~yTa~~l~~ 716 (1113)
T PRK11281 695 APIALIVLVVLGYYYTALRLIG 716 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677777 566666553
No 166
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=79.96 E-value=57 Score=34.02 Aligned_cols=99 Identities=17% Similarity=0.277 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 048095 35 ELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELE 114 (535)
Q Consensus 35 qle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~ 114 (535)
.+..|..++.+-...+...+.+|.+|+.++..++.++ ++.+=...++ +--+..+.++|+.+++-+.....-|.
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDW--IEEECHRVEA-----QLALKEARkEIkQLkQvieTmrssL~ 141 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMREDW--IEEECHRVEA-----QLALKEARKEIKQLKQVIETMRSSLA 141 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3444555555555555555555555555555554444 2222222222 23333344444444444433333333
Q ss_pred HHHHhhhhhhhHHHHHhhhhhhhHHHHHHhhhhhHHHHHHHHHH
Q 048095 115 CKQQQLGLAQSEEDLLKNSLKNSIEHWSQKLNLTKEELSLLQKS 158 (535)
Q Consensus 115 ~k~~~~~~~~~~~~l~~~~~k~~v~~~~~~~~~~~~eL~~~~k~ 158 (535)
.|- -| |+ ++| -|+..+-++|+++=.+
T Consensus 142 ekD--kG------------iQ---KYF-vDINiQN~KLEsLLqs 167 (305)
T PF15290_consen 142 EKD--KG------------IQ---KYF-VDINIQNKKLESLLQS 167 (305)
T ss_pred hhh--hh------------HH---HHH-hhhhhhHhHHHHHHHH
Confidence 221 11 23 233 4666777888888543
No 167
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=79.95 E-value=69 Score=36.91 Aligned_cols=86 Identities=21% Similarity=0.168 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 048095 41 KEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQQQL 120 (535)
Q Consensus 41 ek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~~~~ 120 (535)
-.|.+++..+.+|+-+-+.+.-+..-+..+++..-..|..++-=|+...+.+...++-|+ +++... -.||.++.+|
T Consensus 104 ~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQ---qellsr-tsLETqKlDL 179 (861)
T KOG1899|consen 104 PEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQ---QELLSR-TSLETQKLDL 179 (861)
T ss_pred CcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHH---HHHHhh-hhHHHHHhHH
Confidence 457778888888888888887777777788888888888888888888888877777665 333333 6889999999
Q ss_pred hhhhhHHHHH
Q 048095 121 GLAQSEEDLL 130 (535)
Q Consensus 121 ~~~~~~~~l~ 130 (535)
.-.+|+.||+
T Consensus 180 maevSeLKLk 189 (861)
T KOG1899|consen 180 MAEVSELKLK 189 (861)
T ss_pred HHHHHHhHHH
Confidence 9999999966
No 168
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.47 E-value=1.1e+02 Score=34.08 Aligned_cols=183 Identities=21% Similarity=0.221 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 20 RQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIEL 99 (535)
Q Consensus 20 ~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL 99 (535)
..+.++...+.-+-+++..+......+...+.++..-+..+..-..... .+......+......+.....+.. ..++.
T Consensus 281 ~~i~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~-~l~~~~~~~~~~~~~~~~~~e~~~-~~~~~ 358 (503)
T KOG2273|consen 281 EKIDKLEQQLKKLSKQVQRLVKRRRELASNLAELGKALAQLSALEGETD-ELSEALSGLAKVIESLSKLLEKLT-AEKDS 358 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhh-hhhhH
Confidence 3333333333334444444444444444444444444333322111111 334444444444444444433332 45555
Q ss_pred HHHHHHHhhhhhhHHHHHHhhhhhhhHHHHHhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHH--HHhhhhHHHHHHHHHH
Q 048095 100 GLLQKRVGECNCELECKQQQLGLAQSEEDLLKNSLKNSIEHWSQKLNLTKEELSLLQKSIRE--CKGELDSKERQLAVVQ 177 (535)
Q Consensus 100 ~~lqk~l~E~~~el~~k~~~~~~~~~~~~l~~~~~k~~v~~~~~~~~~~~~eL~~~~k~i~e--~~~EL~~Kek~le~~~ 177 (535)
..+...++++.+=+.+.+..+....+..... .....++..+.+.+....+.++. ........+++++.+.
T Consensus 359 ~~~~~~l~~~i~~~~~~k~~~~~r~~~~~~~--------~~~~~~~~~~~e~~~~~~~~~~~~~~~~k~~~~~~e~~~~~ 430 (503)
T KOG2273|consen 359 KKLAEQLREYIRYLESVKSLFEQRSKALQKL--------QEAQRELSSKKEQLSKLKKKNRSSFGFDKIDLAEKEIEKLE 430 (503)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHH
Confidence 5566666666666777776665443322211 12234444555566666666655 4566677888888888
Q ss_pred HHHHHhhHHHhHHHhhhhhHHHHHHHHHHHhhhHH
Q 048095 178 KRIGECNNELQLKENELNLVKTVVEHCLQKLNLKK 212 (535)
Q Consensus 178 k~~~~~~~~l~~k~k~l~~~~~~~~~~~kele~k~ 212 (535)
..+....+.+..++.+++.+.+.++.+++.|..-+
T Consensus 431 ~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~f~~~~ 465 (503)
T KOG2273|consen 431 EKVNELEELLALKELELDEISERIRAELERFEESR 465 (503)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999998888888888877666533
No 169
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=79.45 E-value=69 Score=31.78 Aligned_cols=139 Identities=14% Similarity=0.171 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 19 ERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIE 98 (535)
Q Consensus 19 e~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeE 98 (535)
+++...++..|.-++.+++.-+++|......+...+..-.+-.+.+ ..+.......+..++..+..+.....-
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~-------Kv~enr~~kdEE~~e~~e~qLkEAk~i 75 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGM-------KVIENRAQKLEEKMEAQEAQLKEAKHI 75 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHH-------HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666556665555555555554443333333 333333333333444444444333333
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhhhhHHHHHhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhH
Q 048095 99 LGLLQKRVGECNCELECKQQQLGLAQSEEDLLKNSLKNSIEHWSQKLNLTKEELSLLQKSIRECKGELDS 168 (535)
Q Consensus 99 L~~lqk~l~E~~~el~~k~~~~~~~~~~~~l~~~~~k~~v~~~~~~~~~~~~eL~~~~k~i~e~~~EL~~ 168 (535)
....-....+.++.|.-++-++.....+-.+-++.| .+..++++...-.|.++..+....+-.+..
T Consensus 76 aE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~----~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~ 141 (205)
T KOG1003|consen 76 AEKADRKYEEVARKLVIIEGELERAEERAEAAESQS----EELEEDLRILDSNLKSLSAKEEKLEQKEEK 141 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHhHhHHHHHHHHHHHHhhhHHH
Confidence 344444555666666666655544332222222222 255566665555666665555544444333
No 170
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=79.44 E-value=1.5e+02 Score=35.67 Aligned_cols=27 Identities=19% Similarity=-0.019 Sum_probs=14.8
Q ss_pred hhhhhhHHHHHhcCCcccccch--HHHhh
Q 048095 470 AHYRQTAKLRQSLGFADKVTVV--PWSSI 496 (535)
Q Consensus 470 a~~~~~~~L~~sLGL~~K~~di--V~~LI 496 (535)
+.-+.++.|.-+|+|++-+.+- ++.||
T Consensus 818 GGE~~~~sLalrLALs~~~~~~~~l~~l~ 846 (908)
T COG0419 818 GGERFLASLALRLALSDLLQGRARLELLF 846 (908)
T ss_pred chHHHHHHHHHHHHHHHHHhcccCCCeeE
Confidence 3344556666666666655554 44444
No 171
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=77.95 E-value=28 Score=32.95 Aligned_cols=62 Identities=19% Similarity=0.298 Sum_probs=30.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHH
Q 048095 27 KRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRI--RGCNGELQSKQGELALVEKEIEES 88 (535)
Q Consensus 27 d~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eI--eE~e~eIe~~qkeIe~le~eIee~ 88 (535)
+.+.++..++..|++++.++..++..++.+|..+.+.. .++...|..++.++..++..+..+
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555554433 334444444444444444444433
No 172
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=77.71 E-value=1.5e+02 Score=34.65 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=35.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHhhhhHH---------------HHHHHHHHHHHHHhhHHHhHHHhhhhhHHHHHHHHHHH
Q 048095 143 QKLNLTKEELSLLQKSIRECKGELDSK---------------ERQLAVVQKRIGECNNELQLKENELNLVKTVVEHCLQK 207 (535)
Q Consensus 143 ~~~~~~~~eL~~~~k~i~e~~~EL~~K---------------ek~le~~~k~~~~~~~~l~~k~k~l~~~~~~~~~~~ke 207 (535)
.....+..++..+..+|...|.+|... -+.++..+..+...-++-..+-++...++..|..||..
T Consensus 117 ~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~ 196 (660)
T KOG4302|consen 117 KQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSV 196 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555554 23445555555555555555555555555555555555
Q ss_pred hhh
Q 048095 208 LNL 210 (535)
Q Consensus 208 le~ 210 (535)
|..
T Consensus 197 Lg~ 199 (660)
T KOG4302|consen 197 LGL 199 (660)
T ss_pred hCC
Confidence 543
No 173
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=77.48 E-value=63 Score=35.77 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 048095 91 ELQSKEIELGLLQKRVGECNCELECKQ 117 (535)
Q Consensus 91 El~~~eeEL~~lqk~l~E~~~el~~k~ 117 (535)
.+..+...+..++.+++.++.-|+.++
T Consensus 429 ~~~s~d~~I~dLqEQlrDlmf~le~qq 455 (493)
T KOG0804|consen 429 ALGSKDEKITDLQEQLRDLMFFLEAQQ 455 (493)
T ss_pred HHHHHHHHHHHHHHHHHhHheehhhhh
Confidence 334444444555555555555544333
No 174
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=77.27 E-value=70 Score=30.65 Aligned_cols=48 Identities=10% Similarity=0.138 Sum_probs=31.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 10 GFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKEL 57 (535)
Q Consensus 10 ~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eL 57 (535)
.+....+....+|..|...+.++-.+.+.|...+......+...+..+
T Consensus 24 ~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f 71 (159)
T PF05384_consen 24 QARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNF 71 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345566666677777777777777777777666666666666665555
No 175
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=77.10 E-value=5 Score=42.48 Aligned_cols=102 Identities=11% Similarity=0.216 Sum_probs=20.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 048095 8 IRGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEE 87 (535)
Q Consensus 8 ~~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee 87 (535)
|.+..-++.+-..+|..+..-+.++...+..+...+..++..+..++..+..+...+......|..++..+..+.-.|.+
T Consensus 51 Vs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsN 130 (326)
T PF04582_consen 51 VSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSN 130 (326)
T ss_dssp -------------------------------------------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhh
Confidence 34444455555555555555555555555555555555555555555555555555555666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 048095 88 SNSELQSKEIELGLLQKRVGEC 109 (535)
Q Consensus 88 ~e~El~~~eeEL~~lqk~l~E~ 109 (535)
++......-..|..++.+++.+
T Consensus 131 LksdVSt~aL~ItdLe~RV~~L 152 (326)
T PF04582_consen 131 LKSDVSTQALNITDLESRVKAL 152 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcchHhhHHHHHHHH
Confidence 6666665555666555555433
No 176
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=76.96 E-value=11 Score=40.07 Aligned_cols=63 Identities=22% Similarity=0.223 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 42 EIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQK 104 (535)
Q Consensus 42 k~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk 104 (535)
.+.++...+..+..+++....+...++.++..++..+..+..-+..+..+.......+..+..
T Consensus 243 ~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~ 305 (344)
T PF12777_consen 243 ELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEE 305 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHH
Confidence 333333333333333333334444444444444444555555555555555555554444443
No 177
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=76.90 E-value=44 Score=29.11 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 83 KEIEESNSELQSKEIELGLLQKRV 106 (535)
Q Consensus 83 ~eIee~e~El~~~eeEL~~lqk~l 106 (535)
.+...++.++..++.++..+...+
T Consensus 74 ~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 74 AEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444333333
No 178
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=76.32 E-value=51 Score=29.35 Aligned_cols=68 Identities=16% Similarity=0.128 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 39 VQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRV 106 (535)
Q Consensus 39 Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l 106 (535)
|+..|..++.+...|.+-+-+-...-..+...+......|..++.+++.+.-.-..+..++..+|.++
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El 70 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEEL 70 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444444444444444444444444444444444444444444444444443
No 179
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=75.79 E-value=64 Score=29.49 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 81 VEKEIEESNSELQSKEIELGLLQKRV 106 (535)
Q Consensus 81 le~eIee~e~El~~~eeEL~~lqk~l 106 (535)
+...++.+...+......+..+++.+
T Consensus 99 l~~~~~~l~~~~~~l~~~l~~~~~~~ 124 (140)
T PRK03947 99 LDKRKEELEKALEKLEEALQKLASRI 124 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 180
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=75.64 E-value=87 Score=30.95 Aligned_cols=38 Identities=26% Similarity=0.101 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 048095 74 KQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNC 111 (535)
Q Consensus 74 ~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~ 111 (535)
.+++.-.+..+|..++.+......+.+.+++...+++.
T Consensus 93 lEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~ 130 (193)
T PF14662_consen 93 LEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELAT 130 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHH
Confidence 33444444455555555555555555555555544444
No 181
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=75.53 E-value=77 Score=30.24 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=14.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 048095 143 QKLNLTKEELSLLQKSIRECKGELDSKERQLAVV 176 (535)
Q Consensus 143 ~~~~~~~~eL~~~~k~i~e~~~EL~~Kek~le~~ 176 (535)
++++.-..++.-++..+..+...+.....++..+
T Consensus 84 eKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~ 117 (177)
T PF13870_consen 84 EKLHFLSEELERLKQELKDREEELAKLREELYRV 117 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443333
No 182
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=75.23 E-value=1.4e+02 Score=33.01 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=10.6
Q ss_pred hHHHhHHHhhhhhHHHHHHHHHH
Q 048095 184 NNELQLKENELNLVKTVVEHCLQ 206 (535)
Q Consensus 184 ~~~l~~k~k~l~~~~~~~~~~~k 206 (535)
..++.....+....++.|...++
T Consensus 354 ~~el~~L~Re~~~~~~~Y~~l~~ 376 (498)
T TIGR03007 354 EAELTQLNRDYEVNKSNYEQLLT 376 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 183
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=75.18 E-value=1.4e+02 Score=33.00 Aligned_cols=62 Identities=23% Similarity=0.161 Sum_probs=31.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048095 8 IRGFNLKLQCKERQLRFLEKRIGESKGEL--------ALVQKEIEECNSELWCKEKELGLVQKRIRGCNG 69 (535)
Q Consensus 8 ~~~~~~KL~~te~dLerved~i~ElEkql--------e~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~ 69 (535)
+.-++.++...+.+|+..+..+.....+. ..+..++..+..++...+.++...+..+..++.
T Consensus 163 ~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~ 232 (498)
T TIGR03007 163 QRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKR 232 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666555555544222 123445555555555555555444444444443
No 184
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=74.25 E-value=62 Score=34.10 Aligned_cols=84 Identities=18% Similarity=0.177 Sum_probs=42.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048095 30 GESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGEC 109 (535)
Q Consensus 30 ~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~ 109 (535)
.++...+..+.++|..-.-....|..+-..+.=+++.++..+..++..+..+..++.+...++.......+.++..+.++
T Consensus 80 r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~L 159 (302)
T PF09738_consen 80 RDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDEL 159 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555556555555555555555555555555555555555555555544444444444444444444444444
Q ss_pred hhhH
Q 048095 110 NCEL 113 (535)
Q Consensus 110 ~~el 113 (535)
.-+|
T Consensus 160 re~L 163 (302)
T PF09738_consen 160 REQL 163 (302)
T ss_pred HHHH
Confidence 4444
No 185
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=74.15 E-value=1.4e+02 Score=34.90 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 048095 76 GELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELE 114 (535)
Q Consensus 76 keIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~ 114 (535)
..+..+...++.+.........++..+..++..++.+|.
T Consensus 103 e~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~ 141 (660)
T KOG4302|consen 103 EQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELG 141 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444444444444445555555555555554
No 186
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=74.00 E-value=1.2e+02 Score=31.70 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=18.8
Q ss_pred cCCCCChhHHHHHHHHHHHHHHhcc
Q 048095 408 IAPDINPQVRDEAMKMAGEWKKKMG 432 (535)
Q Consensus 408 ~~p~i~~~vkeeA~~lA~~WK~~i~ 432 (535)
.+|..++...++.+..-.+.+++|.
T Consensus 271 ~~~s~~s~l~dQLK~qNQEL~ski~ 295 (307)
T PF10481_consen 271 FSNSSSSQLLDQLKAQNQELRSKIN 295 (307)
T ss_pred CCCCCchHHHHHHHHHhHHHHHHHH
Confidence 4666778888888888888887774
No 187
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.88 E-value=44 Score=38.03 Aligned_cols=89 Identities=15% Similarity=0.252 Sum_probs=57.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 048095 12 NLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKEL-----GLVQKRIRGCNGELQSKQGELALVEKEIE 86 (535)
Q Consensus 12 ~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eL-----eeLK~eIeE~e~eIe~~qkeIe~le~eIe 86 (535)
+-+|+.|+.+.+-+++++.-...+.-...+++....++...=...+ .+.+..+.+.. .+...++.++.++.++.
T Consensus 384 ~~~~d~t~d~id~i~~l~k~~na~V~~~N~ri~nf~k~~~~sk~~le~~~v~~~~~~VQe~~-~Y~g~ekk~n~LE~e~k 462 (758)
T COG4694 384 NFKLDSTKDEIDAIKDLIKKANAQVVNHNERIKNFEKQKKSSKEQLEKFLVNEFKSDVQEYN-KYCGLEKKINNLEKEIK 462 (758)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHH
Confidence 3478999999999999999988888888888777776665533333 33355555555 55555566666665555
Q ss_pred HHHHHHHHHHHHHHH
Q 048095 87 ESNSELQSKEIELGL 101 (535)
Q Consensus 87 e~e~El~~~eeEL~~ 101 (535)
+.+.++..+.+++..
T Consensus 463 n~~~ev~kls~ei~~ 477 (758)
T COG4694 463 NNQEEVKKLSNEIKE 477 (758)
T ss_pred hhHHHHHHHHHHHHH
Confidence 555554444443333
No 188
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=73.88 E-value=72 Score=29.17 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048095 73 SKQGELALVEKEIEESNSELQSKEIELGLLQKRVG 107 (535)
Q Consensus 73 ~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~ 107 (535)
.+.+.+..+...+..+...+..+..+++.+...++
T Consensus 98 ~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~ 132 (140)
T PRK03947 98 ILDKRKEELEKALEKLEEALQKLASRIAQLAQELQ 132 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444433
No 189
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=73.69 E-value=25 Score=39.87 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 49 ELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSK 95 (535)
Q Consensus 49 EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~ 95 (535)
|+.+++..-++++++|++++..|+.+++.|...+.++..++.++.+.
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqa 140 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQA 140 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 33333444444444444444444444444444433333333333333
No 190
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=73.58 E-value=1.4e+02 Score=32.47 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=30.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHhhhhhccCC----CCCcchhhHHHHHhhhCChHHHHHHHH
Q 048095 272 KELAIKERHISDYEEKLKAKEKLYDE----IKKSIKELESAKKELEQPK----SLTDNEETRLLSLQSMNNGRSLQLILN 343 (535)
Q Consensus 272 kel~~ke~~i~~~e~el~~~~k~~~~----~~k~~ke~el~ekq~e~~~----~~~~~~~~~L~~lC~~MD~~gL~~fv~ 343 (535)
++=|...++++++.++++....+++. .+.|++. .-|+-.|- -|+-||.+ +|..+|-.|=.
T Consensus 356 kerd~L~keLeekkreleql~~q~~v~~saLdtCika----Ksq~~~p~~r~~~p~pnp~p--------idp~~leefkr 423 (442)
T PF06637_consen 356 KERDSLAKELEEKKRELEQLKMQLAVKTSALDTCIKA----KSQPMTPGPRPVGPVPNPPP--------IDPASLEEFKR 423 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh----ccCCCCCCCCCCCCCCCCCC--------CChHHHHHHHH
Confidence 33444555566666666666666542 3344332 22333222 23335544 67778877743
No 191
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=73.32 E-value=1.1e+02 Score=31.10 Aligned_cols=105 Identities=22% Similarity=0.174 Sum_probs=52.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 048095 10 GFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESN 89 (535)
Q Consensus 10 ~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e 89 (535)
.|.-....+...|.+-.+.+..++.+.......-..+......++.....|.........+-..+...+..+...|..+.
T Consensus 16 q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ 95 (246)
T PF00769_consen 16 QMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLE 95 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666666655555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHH
Q 048095 90 SELQSKEIELGLLQKRVGECNCELE 114 (535)
Q Consensus 90 ~El~~~eeEL~~lqk~l~E~~~el~ 114 (535)
........+...++..+......+.
T Consensus 96 ee~~~ke~Ea~~lq~el~~ar~~~~ 120 (246)
T PF00769_consen 96 EESERKEEEAEELQEELEEAREDEE 120 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555554443
No 192
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.29 E-value=1.6e+02 Score=32.74 Aligned_cols=164 Identities=22% Similarity=0.191 Sum_probs=77.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--------HHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 048095 25 LEKRIGESKGELALVQKEIEECNS-ELWCKEKELGLV--------QKRIRGCNGELQSKQGELALVEKEI---EESNSEL 92 (535)
Q Consensus 25 ved~i~ElEkqle~Laek~~Elk~-EL~~LE~eLeeL--------K~eIeE~e~eIe~~qkeIe~le~eI---ee~e~El 92 (535)
+-..+.+.+.....-...|.-... ++..++.++... ..+|.... ...+.++..+...+ .+.+.++
T Consensus 40 ~l~~~ee~e~~~~~~~A~~~~~~kkel~~~~~q~~~~k~~~~~~~~eqi~~~~---~~~q~e~~~~~~~~~~N~e~dke~ 116 (438)
T COG4487 40 ILNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQFE---LALQDEIAKLEALELLNLEKDKEL 116 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHhhHHH
Confidence 333444444444443233333333 555555655433 22232222 33344444444422 2345555
Q ss_pred HHHHHHHHHHHHHHhh-hhhhHHHHHHhhhhhhhHHHHH-------hhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 048095 93 QSKEIELGLLQKRVGE-CNCELECKQQQLGLAQSEEDLL-------KNSLKNSIEHWSQKLNLTKEELSLLQKSIRECKG 164 (535)
Q Consensus 93 ~~~eeEL~~lqk~l~E-~~~el~~k~~~~~~~~~~~~l~-------~~~~k~~v~~~~~~~~~~~~eL~~~~k~i~e~~~ 164 (535)
..++.+|+.++..+.+ +-..++.-+++.....++..+. +.++...=..+..++|... ....+-+-..
T Consensus 117 ~~le~~L~~~~~e~~~~lq~~~e~~~kkre~~k~~~~l~~~~ekK~e~sLe~eR~k~~~ql~~~~-----~~~e~~e~~e 191 (438)
T COG4487 117 ELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEAN-----LDLEFKENEE 191 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhH-----HHHHHHHHHH
Confidence 5566666665555544 5555565566555554444442 1112211111112222111 3334445555
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHhHHHhhhhh
Q 048095 165 ELDSKERQLAVVQKRIGECNNELQLKENELNL 196 (535)
Q Consensus 165 EL~~Kek~le~~~k~~~~~~~~l~~k~k~l~~ 196 (535)
...++...++..+...+.|.+++++..-+|-.
T Consensus 192 ~~~s~~~~~k~~k~~ae~~~qq~q~~a~~~~n 223 (438)
T COG4487 192 QRESKWAILKKLKRRAELGSQQVQGEALELPN 223 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhcch
Confidence 66666677777777777777777777766643
No 193
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=72.88 E-value=1.1e+02 Score=30.63 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=14.6
Q ss_pred hHHHhHHHhhhhhHHHHHHHHHHHhhhHH
Q 048095 184 NNELQLKENELNLVKTVVEHCLQKLNLKK 212 (535)
Q Consensus 184 ~~~l~~k~k~l~~~~~~~~~~~kele~k~ 212 (535)
..+++--..+|...+...+++...|+..+
T Consensus 137 ~~e~erL~aeL~~er~~~e~q~~~Fe~ER 165 (202)
T PF06818_consen 137 RREVERLRAELQRERQRREEQRSSFEQER 165 (202)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33444444444445555555555555544
No 194
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=72.53 E-value=1.8e+02 Score=33.06 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=15.5
Q ss_pred hHHHhHHHhhhhhHHHHHHHHHHHhhhHH
Q 048095 184 NNELQLKENELNLVKTVVEHCLQKLNLKK 212 (535)
Q Consensus 184 ~~~l~~k~k~l~~~~~~~~~~~kele~k~ 212 (535)
...++..++++...++.+..+...|...+
T Consensus 345 ~~~le~L~~el~~l~~~l~~~a~~Ls~~R 373 (563)
T TIGR00634 345 DESLEALEEEVDKLEEELDKAAVALSLIR 373 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555554
No 195
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=72.49 E-value=45 Score=34.10 Aligned_cols=98 Identities=17% Similarity=0.121 Sum_probs=69.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------------------------------------HHH
Q 048095 9 RGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECN--------------------------------------SEL 50 (535)
Q Consensus 9 ~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk--------------------------------------~EL 50 (535)
.....+|..+++.++.....+..+|..+..++.....-. .=+
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 345667777777777777777777777777743211100 001
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 51 WCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRV 106 (535)
Q Consensus 51 ~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l 106 (535)
--.-.+=...+....+++.++.....++..+..+++.++.+-..+.+.+++++..-
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 11222226668999999999999999999999999999999999999999988764
No 196
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=72.15 E-value=1.6e+02 Score=32.48 Aligned_cols=74 Identities=14% Similarity=0.227 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 19 ERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSEL 92 (535)
Q Consensus 19 e~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El 92 (535)
...|..+...|..+++.+.....+...+.+++..++.++..+..++.+....+....+.|..+...+..++...
T Consensus 37 ~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 37 DKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34556666666666666666566666666666655555555555555555555555555555555555555443
No 197
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=71.96 E-value=1.2e+02 Score=32.74 Aligned_cols=45 Identities=24% Similarity=0.299 Sum_probs=18.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 048095 28 RIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQ 72 (535)
Q Consensus 28 ~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe 72 (535)
.|.|...-...|..+..+...++...+..+..++..|....+-+.
T Consensus 252 Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lk 296 (384)
T PF03148_consen 252 RIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLK 296 (384)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 333333333334444444444444444444444444443333333
No 198
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=71.64 E-value=52 Score=31.19 Aligned_cols=61 Identities=10% Similarity=0.177 Sum_probs=32.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHH
Q 048095 26 EKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNG---ELQSKQGELALVEKEIE 86 (535)
Q Consensus 26 ed~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~---eIe~~qkeIe~le~eIe 86 (535)
..+..+..+.+.....+|.....++..+..+|.....+|..++. ..+.++.+|..++....
T Consensus 5 ~~Im~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 5 DKIMAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 34444444445445555555555555555555555555555554 44445555555554444
No 199
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=71.15 E-value=25 Score=37.35 Aligned_cols=33 Identities=36% Similarity=0.397 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 048095 14 KLQCKERQLRFLEKRIGESKGELALVQKEIEEC 46 (535)
Q Consensus 14 KL~~te~dLerved~i~ElEkqle~Laek~~El 46 (535)
.|..++..|....+.+.+++.++..|+..|+..
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~ 261 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEA 261 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 200
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=71.13 E-value=1.3e+02 Score=31.20 Aligned_cols=62 Identities=24% Similarity=0.262 Sum_probs=27.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 048095 59 LVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQQQL 120 (535)
Q Consensus 59 eLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~~~~ 120 (535)
.+..++...+..+..+..+-..++.+|+..+.++....++|+.++.--=-++-|.+-.+.+|
T Consensus 173 ~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL 234 (267)
T PF10234_consen 173 AVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEEL 234 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444443333333333333333
No 201
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=70.29 E-value=67 Score=27.29 Aligned_cols=86 Identities=27% Similarity=0.337 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 18 KERQLRFLEKRIGESKGELALVQKEIEECNSELWCKE-----KELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSEL 92 (535)
Q Consensus 18 te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE-----~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El 92 (535)
....|......+.....++..|...+.++...+...- ..+.....-+..+...|...+..+..+...++.....+
T Consensus 3 a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l 82 (123)
T PF02050_consen 3 AEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREEL 82 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555554444 44444455555555555555555555555555555555
Q ss_pred HHHHHHHHHHH
Q 048095 93 QSKEIELGLLQ 103 (535)
Q Consensus 93 ~~~eeEL~~lq 103 (535)
.....+...+.
T Consensus 83 ~~a~~~~k~~e 93 (123)
T PF02050_consen 83 QEARRERKKLE 93 (123)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544444
No 202
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=69.97 E-value=22 Score=31.63 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 048095 16 QCKERQLRFLEKRIG--ESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGEL 78 (535)
Q Consensus 16 ~~te~dLerved~i~--ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeI 78 (535)
++|+++|.+++..++ -...+++.|...+...-.++.++..+....-..+.-+...+..+.+.+
T Consensus 33 d~~~q~L~kiE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 33 DSNNQRLTKIENKLDQLAQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp --HTTB-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888 666666666666666666666665555544444444444444443333
No 203
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.81 E-value=64 Score=26.88 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 37 ALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLL 102 (535)
Q Consensus 37 e~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~l 102 (535)
+.|..++.....-+.-|.-++++++.+-..+..+.+..+...+.++.+-+.++++......+|+.+
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666667777777777777777777777777777777777777777777666666654
No 204
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=69.79 E-value=1.4e+02 Score=35.01 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=12.9
Q ss_pred hhhhhhHHHHHhcCCcccccch
Q 048095 470 AHYRQTAKLRQSLGFADKVTVV 491 (535)
Q Consensus 470 a~~~~~~~L~~sLGL~~K~~di 491 (535)
+......+..++|.|+.+|+.+
T Consensus 619 P~~~~~~Etl~sL~FA~rv~~~ 640 (670)
T KOG0239|consen 619 PAAAALFETLCSLRFATRVRSV 640 (670)
T ss_pred ccHHHHhhhhhccchHHHhhce
Confidence 3444555666666676666543
No 205
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=69.55 E-value=1e+02 Score=33.05 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=31.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 22 LRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIEL 99 (535)
Q Consensus 22 Lerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL 99 (535)
|..+...+.|.....+.|+..-+.+..++-....-+-..+..+..+++-+.....+-..++-+++++..+...++++-
T Consensus 87 lr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeees 164 (401)
T PF06785_consen 87 LRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEES 164 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHH
Confidence 333444444444444444444444444433333333333444444444444433333333444444444433333333
No 206
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=69.23 E-value=2.5e+02 Score=33.41 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 048095 19 ERQLRFLEKRIGESKGELALV 39 (535)
Q Consensus 19 e~dLerved~i~ElEkqle~L 39 (535)
+.+-..+...|.|++.-+..|
T Consensus 352 eq~DsE~qRLitEvE~cislL 372 (861)
T PF15254_consen 352 EQEDSEVQRLITEVEACISLL 372 (861)
T ss_pred ccchHHHHHHHHHHHHHHHhh
Confidence 345556666777777776666
No 207
>PRK11281 hypothetical protein; Provisional
Probab=69.02 E-value=3e+02 Score=34.27 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=27.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 9 RGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLV 60 (535)
Q Consensus 9 ~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeL 60 (535)
.....+|.+++++|......+.+.++++.+++.+.+..++.+.+....++++
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI 175 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQI 175 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666666666666444444444444444444333
No 208
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=68.78 E-value=1.1e+02 Score=32.16 Aligned_cols=88 Identities=18% Similarity=0.185 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 19 ERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIE 98 (535)
Q Consensus 19 e~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeE 98 (535)
++.+..+.+.+.|++..+..-=-.+..+-.+-..+-=++..|+..+.+++..+...++++......++..+.....+..+
T Consensus 76 e~s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e 155 (302)
T PF09738_consen 76 EASLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREE 155 (302)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678888888888877633333444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHH
Q 048095 99 LGLLQKRV 106 (535)
Q Consensus 99 L~~lqk~l 106 (535)
++.++..+
T Consensus 156 ~~~Lre~L 163 (302)
T PF09738_consen 156 LDELREQL 163 (302)
T ss_pred HHHHHHHH
Confidence 44444444
No 209
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=68.52 E-value=1.6 Score=50.68 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhcccchhh
Q 048095 201 VEHCLQKLNLKKEELSLLQKSNGEWNGQL 229 (535)
Q Consensus 201 ~~~~~kele~k~~~~~~~~~~~~~~~~~~ 229 (535)
|+.-+.++..-+.+|+.|+.++..+....
T Consensus 320 YKkKLed~~~lk~qvk~Lee~N~~l~e~~ 348 (713)
T PF05622_consen 320 YKKKLEDLEDLKRQVKELEEDNAVLLETK 348 (713)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555566665555554433
No 210
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=68.07 E-value=1.4e+02 Score=29.98 Aligned_cols=88 Identities=23% Similarity=0.290 Sum_probs=50.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 27 KRIGESKGELALVQKEIEECNSELWCKEKE------------LGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQS 94 (535)
Q Consensus 27 d~i~ElEkqle~Laek~~Elk~EL~~LE~e------------LeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~ 94 (535)
..+.++.+.+..--..+.++..++..+... +.++...+......+...+..+..+...+.........
T Consensus 38 ~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~ 117 (240)
T PF12795_consen 38 KRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPER 117 (240)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 334444444444445555555555555443 25556666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhhhhhhHH
Q 048095 95 KEIELGLLQKRVGECNCELE 114 (535)
Q Consensus 95 ~eeEL~~lqk~l~E~~~el~ 114 (535)
....+......+.++...|.
T Consensus 118 aq~~l~~~~~~l~ei~~~L~ 137 (240)
T PF12795_consen 118 AQQQLSEARQRLQEIRNQLQ 137 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 66666666666655555554
No 211
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=67.98 E-value=1.7 Score=50.54 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 11 FNLKLQCKERQLRFLEKRIGE---SKGELALVQKEIEECNSELWCKEKEL 57 (535)
Q Consensus 11 ~~~KL~~te~dLerved~i~E---lEkqle~Laek~~Elk~EL~~LE~eL 57 (535)
-+.+++..+..+++.+..+.+ +..+++.|.++...+......++.++
T Consensus 306 ~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel 355 (713)
T PF05622_consen 306 KADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEEL 355 (713)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443332 33344444444444444444444444
No 212
>PRK02119 hypothetical protein; Provisional
Probab=67.54 E-value=40 Score=28.04 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=17.2
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 048095 7 EIRGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECN 47 (535)
Q Consensus 7 ~~~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk 47 (535)
+|.....++.+.+..+.--++.|.+++..+...+..+..+.
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~ 43 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQ 43 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444433333333333
No 213
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=67.35 E-value=1.7e+02 Score=30.86 Aligned_cols=177 Identities=18% Similarity=0.146 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 048095 37 ALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECK 116 (535)
Q Consensus 37 e~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k 116 (535)
++|+.-+..+..++..|.++-.-+.++.+-.+..-+++.++++.+...+..+-.+...-...=+.+.-.+.-..-|-.+.
T Consensus 52 E~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~l 131 (305)
T PF14915_consen 52 ETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRL 131 (305)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHH
Confidence 45577788888888888888777777776666666666666666655554432222111111111111111111122222
Q ss_pred HHhhhhhhhHHHHHhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHhHHHhhhhh
Q 048095 117 QQQLGLAQSEEDLLKNSLKNSIEHWSQKLNLTKEELSLLQKSIRECKGELDSKERQLAVVQKRIGECNNELQLKENELNL 196 (535)
Q Consensus 117 ~~~~~~~~~~~~l~~~~~k~~v~~~~~~~~~~~~eL~~~~k~i~e~~~EL~~Kek~le~~~k~~~~~~~~l~~k~k~l~~ 196 (535)
+-.....+|..+-.++.+--++-.-.-++.+.+-+|.-.+-++++.+.=|+.-++++.-.+-++++...-.+.
T Consensus 132 qdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qn------- 204 (305)
T PF14915_consen 132 QDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQN------- 204 (305)
T ss_pred HHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 3233333333332222222112222234444455666666666666666666666665555444433333322
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHh
Q 048095 197 VKTVVEHCLQKLNLKKEELSLLQK 220 (535)
Q Consensus 197 ~~~~~~~~~kele~k~~~~~~~~~ 220 (535)
.+..+..++-..+|-+.-+-+++.
T Consensus 205 e~~kv~k~~~Kqes~eERL~Qlqs 228 (305)
T PF14915_consen 205 EQDKVNKYIGKQESLEERLSQLQS 228 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555554
No 214
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=67.33 E-value=1.3e+02 Score=29.50 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=14.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 048095 8 IRGFNLKLQCKERQLRFLEKRIGESKGELALV 39 (535)
Q Consensus 8 ~~~~~~KL~~te~dLerved~i~ElEkqle~L 39 (535)
|++....|..++..+.++--.-..++.+++..
T Consensus 32 ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~ 63 (221)
T PF04012_consen 32 IRDMEEQLRKARQALARVMANQKRLERKLDEA 63 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444
No 215
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=67.25 E-value=1.1e+02 Score=28.80 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 13 LKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKE 54 (535)
Q Consensus 13 ~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE 54 (535)
..|++....|..+...+..+..++..|...+.++..-+..++
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~ 47 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLE 47 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555566666665555555444444444443
No 216
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=66.99 E-value=53 Score=29.09 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 048095 54 EKELGLVQKRIRGCNGELQ 72 (535)
Q Consensus 54 E~eLeeLK~eIeE~e~eIe 72 (535)
+..+.+++.++..+...++
T Consensus 71 ~l~l~el~G~~~~l~~~l~ 89 (106)
T PF10805_consen 71 QLELAELRGELKELSARLQ 89 (106)
T ss_pred HHHHHHHHhHHHHHHHHHH
Confidence 3333333333333333333
No 217
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.76 E-value=2.4e+02 Score=32.33 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 80 LVEKEIEESNSELQSKEIELGLLQKR 105 (535)
Q Consensus 80 ~le~eIee~e~El~~~eeEL~~lqk~ 105 (535)
.+-..|-++++++.++..++...+..
T Consensus 104 ~yl~kI~eleneLKq~r~el~~~q~E 129 (772)
T KOG0999|consen 104 YYLQKILELENELKQLRQELTNVQEE 129 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555554443
No 218
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=66.50 E-value=1.7e+02 Score=32.06 Aligned_cols=9 Identities=11% Similarity=0.276 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 048095 151 ELSLLQKSI 159 (535)
Q Consensus 151 eL~~~~k~i 159 (535)
.+...+..+
T Consensus 306 ~l~~a~~~l 314 (457)
T TIGR01000 306 KIKSLKEDS 314 (457)
T ss_pred HHHHHHHHH
Confidence 333333333
No 219
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=65.95 E-value=20 Score=38.61 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 048095 284 YEEKLKAKEKLYDEIKK 300 (535)
Q Consensus 284 ~e~el~~~~k~~~~~~k 300 (535)
+-.++-...++|....+
T Consensus 288 lS~~~l~kRr~~~~i~~ 304 (370)
T PF02994_consen 288 LSPETLQKRRKFNPIKK 304 (370)
T ss_dssp STHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 33333333444433333
No 220
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=65.34 E-value=39 Score=33.91 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 48 SELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRV 106 (535)
Q Consensus 48 ~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l 106 (535)
.+.....+++..++.++.....+++..+++...+.++.++...+-..+-++.+.+++++
T Consensus 151 ~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 151 EENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555555555555555555555555555555554443
No 221
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=64.75 E-value=1.9e+02 Score=30.52 Aligned_cols=64 Identities=9% Similarity=0.121 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 048095 16 QCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALV 81 (535)
Q Consensus 16 ~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~l 81 (535)
++....=-...+.+.++...+..+. ..++...+..+...|.+.++.|.+.+.+|...+..|..+
T Consensus 44 EQAr~~A~~fA~~ld~~~~kl~~Ms--~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y 107 (301)
T PF06120_consen 44 EQARQEAIEFADSLDELKEKLKEMS--STQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNY 107 (301)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333343444455555555555541 112333334444444444444444444444444444333
No 222
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=64.44 E-value=2.9e+02 Score=32.42 Aligned_cols=51 Identities=27% Similarity=0.381 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-------------HHHhhHHHhHHHhhhhhHHHH
Q 048095 150 EELSLLQKSIRECKGELDSKERQLAVVQKR-------------IGECNNELQLKENELNLVKTV 200 (535)
Q Consensus 150 ~eL~~~~k~i~e~~~EL~~Kek~le~~~k~-------------~~~~~~~l~~k~k~l~~~~~~ 200 (535)
.++..+.+.+.+|.-+++--++.+..+... +...-+-|+++-.+|+..+..
T Consensus 237 ~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~ 300 (716)
T KOG4593|consen 237 EELEAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEKLQST 300 (716)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777776666654444333 335556677777777766655
No 223
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=64.18 E-value=52 Score=37.48 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=15.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048095 28 RIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGC 67 (535)
Q Consensus 28 ~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~ 67 (535)
+.+.+.-++..+..+.+++++++.++...++++++.|...
T Consensus 87 I~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~ 126 (907)
T KOG2264|consen 87 ILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQK 126 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 3333333444444444444444333333333333333333
No 224
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=64.04 E-value=1.4e+02 Score=29.10 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 048095 13 LKLQCKERQLRFLEKRIGESKGELALV 39 (535)
Q Consensus 13 ~KL~~te~dLerved~i~ElEkqle~L 39 (535)
.+++...+.+..+...+.++...+...
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555
No 225
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=63.97 E-value=2.4e+02 Score=31.41 Aligned_cols=49 Identities=20% Similarity=0.217 Sum_probs=25.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 048095 66 GCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELE 114 (535)
Q Consensus 66 E~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~ 114 (535)
..+..+.....+...+.....+.+......+..+..++..+..+..+|.
T Consensus 351 n~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~ 399 (493)
T KOG0804|consen 351 NQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELK 399 (493)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444445555555555555555555655555555553
No 226
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=63.90 E-value=92 Score=26.52 Aligned_cols=69 Identities=12% Similarity=0.133 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 36 LALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQK 104 (535)
Q Consensus 36 le~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk 104 (535)
++.|..++......|.-|..++++++.+-..+..+.......-..+..+...++.+......+|+.+=-
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666667777766666666666666666666666677777776666666665543
No 227
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=63.73 E-value=2.8e+02 Score=32.07 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=12.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHhhhhHH
Q 048095 143 QKLNLTKEELSLLQKSIRECKGELDSK 169 (535)
Q Consensus 143 ~~~~~~~~eL~~~~k~i~e~~~EL~~K 169 (535)
++.+-++..|........+...+++.|
T Consensus 178 q~~~e~e~~L~~~~~~~~~q~~~le~k 204 (629)
T KOG0963|consen 178 QEWAEREAGLKDEEQNLQEQLEELEKK 204 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444544444444444444443
No 228
>PF13166 AAA_13: AAA domain
Probab=63.71 E-value=2.8e+02 Score=32.02 Aligned_cols=19 Identities=16% Similarity=0.363 Sum_probs=7.3
Q ss_pred HhhhcC-chhhhhhhhhcCc
Q 048095 494 SSIGMD-QAENSRMNHGIGP 512 (535)
Q Consensus 494 ~LI~~g-qieAv~~~~~f~p 512 (535)
.+|+.+ |-+...+-..++|
T Consensus 678 r~~n~~SH~~~~~~~~~~~~ 697 (712)
T PF13166_consen 678 RLINDESHSEEDDIEIDMNP 697 (712)
T ss_pred HHHhhcCCcCccccccCCCh
Confidence 344444 4433333333333
No 229
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=63.64 E-value=3.6e+02 Score=33.21 Aligned_cols=79 Identities=19% Similarity=0.125 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhHHHHHhh
Q 048095 54 EKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQQQLGLAQSEEDLLKN 132 (535)
Q Consensus 54 E~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~~~~~~~~~~~~l~~~ 132 (535)
+.+++..-.+|.+++.++..++.++..+.............+..+.+.++..+...+++|++.+.++.......++.+.
T Consensus 440 e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ 518 (1041)
T KOG0243|consen 440 EKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEE 518 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555554445555666777777777777778888887777655544444433
No 230
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=63.37 E-value=1.1e+02 Score=27.28 Aligned_cols=70 Identities=19% Similarity=0.106 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 048095 45 ECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELE 114 (535)
Q Consensus 45 Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~ 114 (535)
.+..+|..+..+...+++-+.+.+..-..+...+...+..|...++++..+.=+-+.+.+.+..+..|+.
T Consensus 2 kla~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 2 KLAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667888888888888888888888887777777777777777777776666666666666666666665
No 231
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=63.19 E-value=82 Score=25.98 Aligned_cols=55 Identities=20% Similarity=0.112 Sum_probs=22.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 048095 65 RGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQQQ 119 (535)
Q Consensus 65 eE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~~~ 119 (535)
..++..+....+.+...+.....+..+.......|...-..+.++..|++...++
T Consensus 8 ~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 8 ATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444444444444444444444444433
No 232
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=63.08 E-value=3.8e+02 Score=33.37 Aligned_cols=29 Identities=7% Similarity=0.037 Sum_probs=15.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHHH
Q 048095 8 IRGFNLKLQCKERQLRFLEKRIGESKGEL 36 (535)
Q Consensus 8 ~~~~~~KL~~te~dLerved~i~ElEkql 36 (535)
..+...+|.++.++|......+...+++.
T Consensus 104 ~~~Leq~l~~~~~~L~~~q~~l~~~~~~~ 132 (1109)
T PRK10929 104 TDALEQEILQVSSQLLEKSRQAQQEQDRA 132 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34445555555555555555555555555
No 233
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=62.69 E-value=1.8e+02 Score=30.29 Aligned_cols=14 Identities=7% Similarity=0.157 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHhHH
Q 048095 20 RQLRFLEKRIGESK 33 (535)
Q Consensus 20 ~dLerved~i~ElE 33 (535)
.+|....+.+.+++
T Consensus 149 ~dl~e~~~~l~DLe 162 (269)
T PF05278_consen 149 SDLKEMIATLKDLE 162 (269)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 234
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=62.63 E-value=90 Score=25.96 Aligned_cols=52 Identities=21% Similarity=0.187 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 50 LWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGL 101 (535)
Q Consensus 50 L~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~ 101 (535)
|..|-.+-+.+-.........|..++..+...+..+..+...+.....++..
T Consensus 14 Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~ 65 (74)
T PF12329_consen 14 IAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELES 65 (74)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333333
No 235
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=61.65 E-value=2.5e+02 Score=30.80 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=11.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 048095 22 LRFLEKRIGESKGELALVQKEIEECNS 48 (535)
Q Consensus 22 Lerved~i~ElEkqle~Laek~~Elk~ 48 (535)
+..+...+.|+......|...|+.++.
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~ 240 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKE 240 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 236
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=61.65 E-value=2.1e+02 Score=29.83 Aligned_cols=41 Identities=32% Similarity=0.445 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 048095 71 LQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNC 111 (535)
Q Consensus 71 Ie~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~ 111 (535)
.+...+.+.....+++....++...+.++..++..+-+++-
T Consensus 195 ke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~ 235 (269)
T PF05278_consen 195 KEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKG 235 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444443333
No 237
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=60.86 E-value=1.5e+02 Score=27.90 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 048095 19 ERQLRFLEKRIGESKGELALV 39 (535)
Q Consensus 19 e~dLerved~i~ElEkqle~L 39 (535)
..+|..+++.++++.+.....
T Consensus 35 ~~~i~~L~~~L~~~~n~t~~~ 55 (146)
T PF08702_consen 35 DKDIQELENLLDQISNSTSEA 55 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhH
Confidence 344444444444444444333
No 238
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=60.52 E-value=1.2e+02 Score=34.10 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 048095 72 QSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCE 112 (535)
Q Consensus 72 e~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~e 112 (535)
.....-...+..++.++...+..+..++..+++.+..+..+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444333333
No 239
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=60.36 E-value=3.4e+02 Score=31.83 Aligned_cols=74 Identities=14% Similarity=0.138 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 33 KGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQS-KQGELALVEKEIEESNSELQSKEIELGLLQKRV 106 (535)
Q Consensus 33 Ekqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~-~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l 106 (535)
.+-.+-|..++.+++.++...+.+++..+.+..-...+-.. ...++..+..++...+.++...+..++.++..+
T Consensus 193 ~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l 267 (754)
T TIGR01005 193 TAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKAL 267 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445666666666666666666665543332211111 123444444444444444444444444444433
No 240
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=59.88 E-value=1.6e+02 Score=28.03 Aligned_cols=94 Identities=16% Similarity=0.140 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 20 RQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRG----CNGELQSKQGELALVEKEIEESNSELQSK 95 (535)
Q Consensus 20 ~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE----~e~eIe~~qkeIe~le~eIee~e~El~~~ 95 (535)
..|+.....-.+++..--...+++...-..+.+-.+.|..++..++. ...++....+.|+....++.-+-.....+
T Consensus 31 sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKK 110 (159)
T PF04949_consen 31 SALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKK 110 (159)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34444444444444444444444443333333333444333333322 23444445555555555555555666667
Q ss_pred HHHHHHHHHHHhhhhhhH
Q 048095 96 EIELGLLQKRVGECNCEL 113 (535)
Q Consensus 96 eeEL~~lqk~l~E~~~el 113 (535)
+.++......+|+.+.|=
T Consensus 111 EkEykealea~nEknkeK 128 (159)
T PF04949_consen 111 EKEYKEALEAFNEKNKEK 128 (159)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777776666553
No 241
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=59.52 E-value=1.2e+02 Score=26.37 Aligned_cols=17 Identities=41% Similarity=0.343 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 048095 40 QKEIEECNSELWCKEKE 56 (535)
Q Consensus 40 aek~~Elk~EL~~LE~e 56 (535)
..+++.++.+...+.++
T Consensus 42 ~~~~e~lr~~rN~~sk~ 58 (108)
T PF02403_consen 42 QQELEELRAERNELSKE 58 (108)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHH
Confidence 33333333333333333
No 242
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=59.40 E-value=96 Score=25.35 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 048095 45 ECNSELWCKEKELGLVQKRIRGCNGELQSKQ-GELALVEKEIEESNSELQSK 95 (535)
Q Consensus 45 Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~q-keIe~le~eIee~e~El~~~ 95 (535)
+....+...+..|.+...-|.+++-++...- ..-..+...+..+++++..+
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~l 73 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555544443 22233333344444333333
No 243
>PF14992 TMCO5: TMCO5 family
Probab=59.14 E-value=2.2e+02 Score=29.75 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 048095 37 ALVQKEIEECNSELWCKEKEL 57 (535)
Q Consensus 37 e~Laek~~Elk~EL~~LE~eL 57 (535)
..+-.++.+....+..|+.++
T Consensus 21 q~lL~ki~~~E~~iq~Le~Ei 41 (280)
T PF14992_consen 21 QSLLQKIQEKEGAIQSLEREI 41 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555
No 244
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=58.54 E-value=1.6e+02 Score=31.03 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 39 VQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSEL 92 (535)
Q Consensus 39 Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El 92 (535)
|.+++..+..+++++..++.+++..-.......+.....++....+|+..+.++
T Consensus 271 lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~Kqem 324 (384)
T KOG0972|consen 271 LNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEM 324 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555555555555555555555555555555555444
No 245
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.47 E-value=3.4e+02 Score=31.23 Aligned_cols=24 Identities=13% Similarity=0.263 Sum_probs=12.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHH
Q 048095 10 GFNLKLQCKERQLRFLEKRIGESK 33 (535)
Q Consensus 10 ~~~~KL~~te~dLerved~i~ElE 33 (535)
++..+++..+.+++.....++-..
T Consensus 47 ~Lkqq~eEleaeyd~~R~Eldqtk 70 (772)
T KOG0999|consen 47 DLKQQLEELEAEYDLARTELDQTK 70 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554444333
No 246
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=58.45 E-value=3.1e+02 Score=30.84 Aligned_cols=12 Identities=0% Similarity=0.027 Sum_probs=7.3
Q ss_pred HHHHhhhCCCch
Q 048095 356 ISQTLTKACDPA 367 (535)
Q Consensus 356 v~~AL~~A~DPA 367 (535)
+|.++...|.+.
T Consensus 456 ~~~~~~~~~~d~ 467 (511)
T PF09787_consen 456 VPLLMKDSPHDI 467 (511)
T ss_pred hhhhccCCCccc
Confidence 677766655443
No 247
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.33 E-value=2.2e+02 Score=29.01 Aligned_cols=66 Identities=21% Similarity=0.236 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 38 LVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQ 103 (535)
Q Consensus 38 ~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lq 103 (535)
..+.++.+.+.+...+...+.+-..++.....=+........-++++|...++++......++.++
T Consensus 48 efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lk 113 (246)
T KOG4657|consen 48 EFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLK 113 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555554444444444443333333334444444444444444433333333
No 248
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=58.01 E-value=1.4e+02 Score=26.81 Aligned_cols=7 Identities=0% Similarity=0.093 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 048095 76 GELALVE 82 (535)
Q Consensus 76 keIe~le 82 (535)
..|..+.
T Consensus 65 aki~ea~ 71 (107)
T PF09304_consen 65 AKIDEAR 71 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 249
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=56.83 E-value=31 Score=37.15 Aligned_cols=9 Identities=22% Similarity=0.335 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 048095 97 IELGLLQKR 105 (535)
Q Consensus 97 eEL~~lqk~ 105 (535)
.+++.+.+.
T Consensus 151 eris~lEd~ 159 (370)
T PF02994_consen 151 ERISELEDR 159 (370)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 333333333
No 250
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=56.41 E-value=1.7e+02 Score=27.08 Aligned_cols=50 Identities=4% Similarity=0.118 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 048095 40 QKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESN 89 (535)
Q Consensus 40 aek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e 89 (535)
+.-.+.+...|..+...+++...-...++.++...+..+......++..+
T Consensus 60 ~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~ 109 (126)
T PF07889_consen 60 SSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQ 109 (126)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33334444444444444444433333333333333333333333333333
No 251
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=56.34 E-value=1.1e+02 Score=29.11 Aligned_cols=17 Identities=24% Similarity=0.161 Sum_probs=10.8
Q ss_pred hhhhHHHHHHHHHHHHH
Q 048095 145 LNLTKEELSLLQKSIRE 161 (535)
Q Consensus 145 ~~~~~~eL~~~~k~i~e 161 (535)
+.|..+.|..++++-.-
T Consensus 118 ~~Gldeqi~~lkes~~y 134 (155)
T PF06810_consen 118 LKGLDEQIKALKESDPY 134 (155)
T ss_pred cccHHHHHHHHHhcCch
Confidence 55666777777766443
No 252
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=55.05 E-value=1.2e+02 Score=25.16 Aligned_cols=11 Identities=18% Similarity=0.072 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 048095 90 SELQSKEIELG 100 (535)
Q Consensus 90 ~El~~~eeEL~ 100 (535)
.+......+|+
T Consensus 53 ~e~~~~~~rl~ 63 (72)
T PF06005_consen 53 QERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 253
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=54.17 E-value=3.5e+02 Score=32.27 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=26.8
Q ss_pred HHHHHHHHhhcchhhhHHhHHHHhhhCCCchhHHHHHhcccCCCCCCCCC
Q 048095 337 SLQLILNQHLQKHDLIFGQISQTLTKACDPALLVLDAMQGFYPPHSRKGD 386 (535)
Q Consensus 337 gL~~fv~~~~k~~~~lr~Ev~~AL~~A~DPAkLVLdai~~f~~~~~~~~~ 386 (535)
|+....+-|.+....||..|..-|+..| .|..|+.++...|+
T Consensus 732 g~~~v~IIHGkGtG~Lr~~v~~~L~~~~--------~V~~f~~a~~~~GG 773 (782)
T PRK00409 732 GYGEVLIIHGKGTGKLRKGVQEFLKKHP--------SVKSFRDAPPNEGG 773 (782)
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCC--------ceeeeeecCcccCC
Confidence 4444445566666688888888888755 36777766554443
No 254
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=54.03 E-value=2.2e+02 Score=27.79 Aligned_cols=66 Identities=21% Similarity=0.126 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhHHHHHhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHH
Q 048095 90 SELQSKEIELGLLQKRVGECNCELECKQQQLGLAQSEEDLLKNSLKNSIEHWSQKLNLTKEELSLLQKSIREC 162 (535)
Q Consensus 90 ~El~~~eeEL~~lqk~l~E~~~el~~k~~~~~~~~~~~~l~~~~~k~~v~~~~~~~~~~~~eL~~~~k~i~e~ 162 (535)
.++..+-.++..++..+.++..+|.....--...+.. ++..+..+....+.|+-.+.+++--+...
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~-------~~~~~~~~~~~anrwTDNI~~l~~~~~~k 168 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYSENDPEKIEK-------LKEEIKIAKEAANRWTDNIFSLKSYLKKK 168 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH-------HHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 3444455555555555555555555222100001111 22223344455666667776666665553
No 255
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=53.97 E-value=3.5e+02 Score=30.02 Aligned_cols=31 Identities=19% Similarity=0.082 Sum_probs=13.9
Q ss_pred HhhHHHhHHHhhhhhHHHHHHHHHHHhhhHH
Q 048095 182 ECNNELQLKENELNLVKTVVEHCLQKLNLKK 212 (535)
Q Consensus 182 ~~~~~l~~k~k~l~~~~~~~~~~~kele~k~ 212 (535)
...+-|+.-+++|....+.+-+|..+..+-+
T Consensus 276 ekv~~~qti~~e~~~~lk~i~~~~~e~d~~E 306 (446)
T KOG4438|consen 276 EKVTNLQTIEKELKALLKKISSDGVEYDSLE 306 (446)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 3344444444444444444444544444433
No 256
>PF15456 Uds1: Up-regulated During Septation
Probab=53.91 E-value=1.8e+02 Score=26.71 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=12.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 29 IGESKGELALVQKEIEECNSELWCKEKEL 57 (535)
Q Consensus 29 i~ElEkqle~Laek~~Elk~EL~~LE~eL 57 (535)
++++.+++..|..++.-++..+. ++..+
T Consensus 24 Ve~LKkEl~~L~~R~~~lr~kl~-le~k~ 51 (124)
T PF15456_consen 24 VEELKKELRSLDSRLEYLRRKLA-LESKI 51 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 33444444444444444444444 33333
No 257
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=53.40 E-value=1.1e+02 Score=27.19 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q 048095 55 KELGLVQKRIRGCNGELQSKQGEL 78 (535)
Q Consensus 55 ~eLeeLK~eIeE~e~eIe~~qkeI 78 (535)
.++..++..+.++++++..+..++
T Consensus 65 ~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 65 DDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333333333333333333333333
No 258
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=53.35 E-value=35 Score=32.85 Aligned_cols=73 Identities=22% Similarity=0.241 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHhhh-----hhhhHHHHHhcCCcccccchHHHhhhcC-chhhhhhhhhc-----
Q 048095 442 LGFLHLLAAYRLAPAFDGNELESLLDIVAH-----YRQTAKLRQSLGFADKVTVVPWSSIGMD-QAENSRMNHGI----- 510 (535)
Q Consensus 442 ~gFL~lla~fgi~s~Fd~del~~Lv~~va~-----~~~~~~L~~sLGL~~K~~diV~~LI~~g-qieAv~~~~~f----- 510 (535)
.+.|+.+..|++.+ |...+..++.+.+. +.-+...++.||..+ ..+|+-|+.+| .++|+++|...
T Consensus 45 ~~~L~qllq~~Vi~--DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~--~~iievLL~~g~vl~ALr~ar~~~~~~~ 120 (167)
T PF07035_consen 45 FSQLHQLLQYHVIP--DSKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAY--EEIIEVLLSKGQVLEALRYARQYHKVDS 120 (167)
T ss_pred HHHHHHHHhhcccC--CcHHHHHHHHHhHccChHHHHHHHHHHHHhhhhH--HHHHHHHHhCCCHHHHHHHHHHcCCccc
Confidence 56677778888876 56666666665543 334566677777654 24678899999 79999999664
Q ss_pred -CchhHHhH
Q 048095 511 -GPAVFREQ 518 (535)
Q Consensus 511 -~p~~ll~~ 518 (535)
+|.-+|++
T Consensus 121 ~~~~~fLeA 129 (167)
T PF07035_consen 121 VPARKFLEA 129 (167)
T ss_pred CCHHHHHHH
Confidence 45556655
No 259
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=53.12 E-value=2e+02 Score=27.12 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 18 KERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLV 60 (535)
Q Consensus 18 te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeL 60 (535)
+..+|+++...+.-+..+++.|+..+..+...+..+..-+..+
T Consensus 4 ~~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl 46 (145)
T COG1730 4 TQQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETL 46 (145)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666555555555555333
No 260
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=53.08 E-value=60 Score=24.58 Aligned_cols=38 Identities=8% Similarity=0.111 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 048095 33 KGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGE 70 (535)
Q Consensus 33 Ekqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~e 70 (535)
+...+.|...|+.++.++..|..+-+.++.++..+.+.
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555555555555555555544444443
No 261
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=52.26 E-value=1.7e+02 Score=25.95 Aligned_cols=14 Identities=29% Similarity=0.361 Sum_probs=5.3
Q ss_pred hhHHHHHHHHHHHH
Q 048095 13 LKLQCKERQLRFLE 26 (535)
Q Consensus 13 ~KL~~te~dLerve 26 (535)
.-|+....+..+..
T Consensus 14 ~~l~~kr~e~~~~~ 27 (126)
T PF13863_consen 14 LALDTKREEIERRE 27 (126)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 262
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=51.98 E-value=68 Score=32.27 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=30.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 048095 26 EKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEI 85 (535)
Q Consensus 26 ed~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eI 85 (535)
+...+........+..+.++..++++..+.+..+++++.+....++.+.-.+-..++++|
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555555555555555555555544444444443
No 263
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=51.28 E-value=3.3e+02 Score=29.03 Aligned_cols=42 Identities=12% Similarity=0.222 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 048095 38 LVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELA 79 (535)
Q Consensus 38 ~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe 79 (535)
.|+.-+.+.+.+-..|..++..++..+.+.++++..+...+.
T Consensus 69 ~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la 110 (319)
T PF09789_consen 69 NLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLA 110 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 334444444444444444444444444444444444444333
No 264
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=50.87 E-value=2.1e+02 Score=28.56 Aligned_cols=32 Identities=34% Similarity=0.358 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 048095 44 EECNSELWCKEKELGLVQKRIRGCNGELQSKQ 75 (535)
Q Consensus 44 ~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~q 75 (535)
..+...+..++.++..++.+|++++......|
T Consensus 139 ~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q 170 (221)
T PF05700_consen 139 EQLEAMLKRLEKELAKLKKEIEEVNRERKRRQ 170 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555554444333
No 265
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=50.48 E-value=6.3e+02 Score=31.98 Aligned_cols=29 Identities=3% Similarity=0.243 Sum_probs=13.4
Q ss_pred HHHhHHHhhhhhHHHHHHHHHHHhhhHHH
Q 048095 185 NELQLKENELNLVKTVVEHCLQKLNLKKE 213 (535)
Q Consensus 185 ~~l~~k~k~l~~~~~~~~~~~kele~k~~ 213 (535)
..+....|........+..|.++......
T Consensus 407 ~~~~q~~k~~~~~~s~~~~~~~~~~~~~~ 435 (1294)
T KOG0962|consen 407 DDIKQRKKDIAELETNALDLIKEITDREV 435 (1294)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33333444444444445555555544443
No 266
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=50.13 E-value=1.3e+02 Score=28.77 Aligned_cols=29 Identities=14% Similarity=0.121 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 048095 40 QKEIEECNSELWCKEKELGLVQKRIRGCN 68 (535)
Q Consensus 40 aek~~Elk~EL~~LE~eLeeLK~eIeE~e 68 (535)
......+..++.+|+..+..+....+.+.
T Consensus 71 kk~~~~~~eelerLe~~iKdl~~lye~Vs 99 (157)
T COG3352 71 KKQLQDIKEELERLEENIKDLVSLYELVS 99 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444433333333
No 267
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=49.92 E-value=2.1e+02 Score=30.19 Aligned_cols=103 Identities=17% Similarity=0.257 Sum_probs=51.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 048095 9 RGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEES 88 (535)
Q Consensus 9 ~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~ 88 (535)
+|...-+++..+--..|+....++...++.|-..+..--..|...+ .-++.++..+-.++..+...+.++
T Consensus 223 kDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SRE----------K~lNnqL~~l~q~fr~a~~~lse~ 292 (384)
T KOG0972|consen 223 KDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASRE----------KSLNNQLASLMQKFRRATDTLSEL 292 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555433332222222222 222333333334444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 048095 89 NSELQSKEIELGLLQKRVGECNCELECKQQQLG 121 (535)
Q Consensus 89 e~El~~~eeEL~~lqk~l~E~~~el~~k~~~~~ 121 (535)
+..-++...-.......+++.+.|++-++.+.+
T Consensus 293 ~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemE 325 (384)
T KOG0972|consen 293 REKYKQASVGVSSRTETLDEVMDEIEQLKQEME 325 (384)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566666777778888877766553
No 268
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=49.78 E-value=3.9e+02 Score=29.40 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 49 ELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQK 104 (535)
Q Consensus 49 EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk 104 (535)
++..+..+|..++.++....++....+.+-+...+++.....+......+++...+
T Consensus 75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~ 130 (499)
T COG4372 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQ 130 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444444444444443333
No 269
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=49.76 E-value=1.6e+02 Score=28.43 Aligned_cols=67 Identities=24% Similarity=0.288 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 40 QKEIEECNSELWCKEKELGLVQKRIRGCNGELQS-KQGELALVEKEIEESNSELQSKEIELGLLQKRV 106 (535)
Q Consensus 40 aek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~-~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l 106 (535)
-.++..+..++..++..++..+.+.......-.. ...+......+|++++.++..++.+++.++++.
T Consensus 117 I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 117 IRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554444433222221 222333333444444444444444444444443
No 270
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=49.49 E-value=5.1e+02 Score=30.62 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=8.7
Q ss_pred HHHHhhHHHhHHHhhhh
Q 048095 179 RIGECNNELQLKENELN 195 (535)
Q Consensus 179 ~~~~~~~~l~~k~k~l~ 195 (535)
.+....++|+.+.+++.
T Consensus 434 ~~~~~~e~Lqk~~~~~k 450 (698)
T KOG0978|consen 434 QVEELSEELQKKEKNFK 450 (698)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444555555555553
No 271
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=49.15 E-value=2e+02 Score=25.97 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=18.6
Q ss_pred hhhhhhhHHHHHHHHHH-----HHHHHHhHHHHHHHH
Q 048095 8 IRGFNLKLQCKERQLRF-----LEKRIGESKGELALV 39 (535)
Q Consensus 8 ~~~~~~KL~~te~dLer-----ved~i~ElEkqle~L 39 (535)
..||..|....+..|+- -...+..++.-+..+
T Consensus 19 ~~gC~~K~~~Ie~qI~~Ak~~gN~~rv~GLe~AL~~v 55 (115)
T PF06476_consen 19 LTGCEAKEQAIEKQIEYAKAHGNQHRVAGLEKALEEV 55 (115)
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46777777777777654 233444444444444
No 272
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=49.09 E-value=1.6e+02 Score=29.19 Aligned_cols=86 Identities=22% Similarity=0.318 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH----HHHHH-------HhHHHHHHHHHHHHHH
Q 048095 17 CKERQLRFLEKRIGESKGELALVQKEIEEC----NSELWCKEKELGLV----QKRIR-------GCNGELQSKQGELALV 81 (535)
Q Consensus 17 ~te~dLerved~i~ElEkqle~Laek~~El----k~EL~~LE~eLeeL----K~eIe-------E~e~eIe~~qkeIe~l 81 (535)
.|+-+.-|++..+++++..+.......... .....-...+++.| ..++. -....+......|..+
T Consensus 93 ~~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~i 172 (195)
T PF12761_consen 93 GTDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTI 172 (195)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHH
Confidence 444556666666666666666664443331 11111111222111 11121 2223455555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 048095 82 EKEIEESNSELQSKEIELGLL 102 (535)
Q Consensus 82 e~eIee~e~El~~~eeEL~~l 102 (535)
+.++..++.-+.....+|..+
T Consensus 173 e~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 173 EEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 655555555555555555544
No 273
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=48.85 E-value=1.4e+02 Score=23.89 Aligned_cols=20 Identities=10% Similarity=0.197 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 048095 82 EKEIEESNSELQSKEIELGL 101 (535)
Q Consensus 82 e~eIee~e~El~~~eeEL~~ 101 (535)
...+...+.+-.....+|+.
T Consensus 30 r~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 30 RADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444443
No 274
>COG5139 Uncharacterized conserved protein [Function unknown]
Probab=48.80 E-value=38 Score=35.55 Aligned_cols=84 Identities=21% Similarity=0.332 Sum_probs=60.0
Q ss_pred HHHHHhcccCCCCCCCCCCcchhhHhHHHHHHHHhhhhh------------------cCCCCChhHHHHHHHHHHHHHHh
Q 048095 369 LVLDAMQGFYPPHSRKGDMEFDVSIIKRTCILLLEQLSN------------------IAPDINPQVRDEAMKMAGEWKKK 430 (535)
Q Consensus 369 LVLdai~~f~~~~~~~~~~~~~~~~~r~~CilLLE~L~~------------------~~p~i~~~vkeeA~~lA~~WK~~ 430 (535)
=|||.|.+++-|-+ |+..+...++++..-+|--|+. ++|.+++.|+.-|.+|..+|-.-
T Consensus 209 niLdsVr~WLEPLP---D~SlP~~~IqksL~dvL~~lpI~tEHL~eSgvGrIV~FYtiskk~e~~v~r~A~~LV~eWtrp 285 (397)
T COG5139 209 NILDSVRGWLEPLP---DKSLPNIKIQKSLLDVLKTLPIHTEHLVESGVGRIVYFYTISKKEEKEVRRSAKALVQEWTRP 285 (397)
T ss_pred chHHHHHhhhccCC---CCCCcchHHHHHHHHHHhhCCchHHHhhhcCCceEEEEEecCCcccHHHHHHHHHHHHHhhcc
Confidence 38999999986543 3444555677887777766641 58899999999999999999988
Q ss_pred ccccCCC-hHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 048095 431 MGVIGEN-SLEVLGFLHLLAAYRLAPAFDGNELESL 465 (535)
Q Consensus 431 i~~~~~~-~lea~gFL~lla~fgi~s~Fd~del~~L 465 (535)
|-...+| .--+.| .-+||.+-+.+-
T Consensus 286 Iik~s~nyRDk~i~----------~~~F~~E~~~~k 311 (397)
T COG5139 286 IIKPSGNYRDKRIM----------QLEFDSEKLRKK 311 (397)
T ss_pred ccCcCCCcchhhhh----------eeecCHHHHHHH
Confidence 7655544 222232 347888887653
No 275
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=47.78 E-value=1.9e+02 Score=25.12 Aligned_cols=64 Identities=13% Similarity=0.160 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 37 ALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELG 100 (535)
Q Consensus 37 e~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~ 100 (535)
..+...|.+....+..+-.++..+...+..+..++......+-.++...+.+..++..+...+.
T Consensus 6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~ 69 (96)
T PF08647_consen 6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLS 69 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444444444444444333
No 276
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=47.73 E-value=2.9e+02 Score=27.24 Aligned_cols=50 Identities=28% Similarity=0.316 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 048095 67 CNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECK 116 (535)
Q Consensus 67 ~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k 116 (535)
+..-+...+..+.....-....+.++..+..-|...+.++..+.+.|.+-
T Consensus 114 L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~A 163 (188)
T PF05335_consen 114 LKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAA 163 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333
No 277
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=47.71 E-value=5.2e+02 Score=30.26 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 048095 14 KLQCKERQLRFLEKRIGESKGELALVQKEIEEC 46 (535)
Q Consensus 14 KL~~te~dLerved~i~ElEkqle~Laek~~El 46 (535)
+.+.+.+-..-+...+.+++.++.....++...
T Consensus 188 k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~f 220 (754)
T TIGR01005 188 KSESNTAAADFLAPEIADLSKQSRDAEAEVAAY 220 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555444444333
No 278
>PF14282 FlxA: FlxA-like protein
Probab=47.67 E-value=1.3e+02 Score=26.52 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 048095 70 ELQSKQGELALVEKEIEES 88 (535)
Q Consensus 70 eIe~~qkeIe~le~eIee~ 88 (535)
.+..++.+|..++..|..+
T Consensus 52 q~q~Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 52 QIQLLQAQIQQLQAQIAQL 70 (106)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333334333333
No 279
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=47.46 E-value=2.7e+02 Score=29.79 Aligned_cols=6 Identities=17% Similarity=0.501 Sum_probs=2.3
Q ss_pred HHHHHH
Q 048095 397 TCILLL 402 (535)
Q Consensus 397 ~CilLL 402 (535)
+||.+|
T Consensus 221 ~~vq~l 226 (330)
T PF07851_consen 221 SVVQFL 226 (330)
T ss_pred HHHHHH
Confidence 333333
No 280
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.34 E-value=4.7e+02 Score=29.58 Aligned_cols=49 Identities=14% Similarity=0.233 Sum_probs=29.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 048095 9 RGFNLKLQCKERQLRFLEKRIGESKGELALVQ-------KEIEECNSELWCKEKEL 57 (535)
Q Consensus 9 ~~~~~KL~~te~dLerved~i~ElEkqle~La-------ek~~Elk~EL~~LE~eL 57 (535)
.|.+.+|+.-..+..-..++|..+.+.+..|+ .++.+++....+|+.-+
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~Ri 392 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRI 392 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666667777777777777774 33444444444444433
No 281
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=47.06 E-value=2.9e+02 Score=27.08 Aligned_cols=66 Identities=11% Similarity=0.135 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 048095 45 ECNSELWCKEKELGLVQKRIRGCNGELQSKQGE--LALVEKEIEESNSELQSKEIELGLLQKRVGECN 110 (535)
Q Consensus 45 Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qke--Ie~le~eIee~e~El~~~eeEL~~lqk~l~E~~ 110 (535)
.+..++..+...++.++..+.-++.+|..+... +..++.+|+.++.+-....++|..+..-.+...
T Consensus 83 ~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vt 150 (201)
T KOG4603|consen 83 VLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVT 150 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 344444444444444444444444444444432 233444444444444444444444444443333
No 282
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=46.80 E-value=4.6e+02 Score=31.31 Aligned_cols=49 Identities=22% Similarity=0.150 Sum_probs=22.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 9 RGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKEL 57 (535)
Q Consensus 9 ~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eL 57 (535)
.+||..|-..+.-=-.+...+.|..+.++.|+.+-+++-+.++....+-
T Consensus 423 ~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~En 471 (861)
T PF15254_consen 423 QDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEEN 471 (861)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Confidence 3455555444444344444444444444444444444444444333333
No 283
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=46.69 E-value=43 Score=35.61 Aligned_cols=93 Identities=14% Similarity=0.170 Sum_probs=18.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 25 LEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQK 104 (535)
Q Consensus 25 ved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk 104 (535)
+...+..+...++.++..+.+.+.++..+...+..++..+..+...+..+...+......|..++.......-.+..++.
T Consensus 54 lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLks 133 (326)
T PF04582_consen 54 LSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKS 133 (326)
T ss_dssp ----------------------------------------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhh
Confidence 44445555555555556666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHhhhhhhHHHHH
Q 048095 105 RVGECNCELECKQ 117 (535)
Q Consensus 105 ~l~E~~~el~~k~ 117 (535)
.+....--+.+.+
T Consensus 134 dVSt~aL~ItdLe 146 (326)
T PF04582_consen 134 DVSTQALNITDLE 146 (326)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhhcchHhhHH
Confidence 6665555555444
No 284
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.33 E-value=5.1e+02 Score=29.75 Aligned_cols=76 Identities=14% Similarity=0.181 Sum_probs=47.7
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 048095 3 TRTNEIRGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGEL 78 (535)
Q Consensus 3 ~~~~~~~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeI 78 (535)
.||.+|+.|.+.+++...-.+.+...+.+-+.++..+++....+......+...|..+.=-++..+.++..+..++
T Consensus 328 E~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qL 403 (654)
T KOG4809|consen 328 ERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQL 403 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888888888888887888877777777666665555555555555444333333333333333333
No 285
>PRK09343 prefoldin subunit beta; Provisional
Probab=46.26 E-value=2.3e+02 Score=25.66 Aligned_cols=11 Identities=0% Similarity=-0.016 Sum_probs=3.9
Q ss_pred HHhHHHHHHHH
Q 048095 29 IGESKGELALV 39 (535)
Q Consensus 29 i~ElEkqle~L 39 (535)
+.-+-.+...+
T Consensus 23 l~~~~~q~~~l 33 (121)
T PRK09343 23 LERLLQQKSQI 33 (121)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 286
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=45.77 E-value=2.8e+02 Score=29.03 Aligned_cols=80 Identities=14% Similarity=0.106 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 048095 31 ESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECN 110 (535)
Q Consensus 31 ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~ 110 (535)
++.+--+.|+.-+..+..++......|+.+.+....+..+|++...+++...+.++.+++-+=..-.++....+.+..++
T Consensus 102 el~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly 181 (338)
T KOG3647|consen 102 ELLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLY 181 (338)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
No 287
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=45.71 E-value=2.3e+02 Score=26.93 Aligned_cols=53 Identities=9% Similarity=0.146 Sum_probs=35.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 048095 61 QKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCEL 113 (535)
Q Consensus 61 K~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el 113 (535)
...+..+-.-|..++..++.+..++..+.......+..++.++..+...+...
T Consensus 39 ~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~~ 91 (162)
T PF05565_consen 39 EEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEAA 91 (162)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555555566666666777777777777777777777777777766655544
No 288
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=45.42 E-value=3.8e+02 Score=31.93 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=25.3
Q ss_pred HHHhhcchhhhHHhHHHHhhhCCCchhHHHHHhcccCCCCCCCCC
Q 048095 342 LNQHLQKHDLIFGQISQTLTKACDPALLVLDAMQGFYPPHSRKGD 386 (535)
Q Consensus 342 v~~~~k~~~~lr~Ev~~AL~~A~DPAkLVLdai~~f~~~~~~~~~ 386 (535)
.+-|.+....||..|+.-|+..|. |..|..++...|+
T Consensus 726 ~IIHGkGtG~Lr~~v~~~L~~~~~--------V~~f~~a~~~~GG 762 (771)
T TIGR01069 726 LIIHGKGSGKLRKGVQELLKNHPK--------VKSFRDAPPNDGG 762 (771)
T ss_pred EEEcCCChhHHHHHHHHHhcCCcc--------eeeecccCcccCC
Confidence 444666667888888888888663 6777766554443
No 289
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=45.17 E-value=5e+02 Score=29.28 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 048095 44 EECNSELWCKEKELGLVQKRIRGCNGELQSKQGELA 79 (535)
Q Consensus 44 ~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe 79 (535)
.+...+...+..++..+..........+...+..++
T Consensus 56 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le 91 (475)
T PRK10361 56 EHWRAECELLNNEVRSLQSINTSLEADLREVTTRME 91 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444443333
No 290
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=44.87 E-value=3.8e+02 Score=27.88 Aligned_cols=66 Identities=14% Similarity=0.116 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 048095 49 ELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELE 114 (535)
Q Consensus 49 EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~ 114 (535)
.|..|+.+|.--++.-++++..-+.+-+-+..+....+..++.+..+.++|....+.+..+...++
T Consensus 237 ria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~ 302 (330)
T KOG2991|consen 237 RIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLE 302 (330)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555444555555555555555555555555555555555555555555555544444444
No 291
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=44.85 E-value=7.7e+02 Score=31.40 Aligned_cols=93 Identities=13% Similarity=0.221 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 20 RQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLV--QKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEI 97 (535)
Q Consensus 20 ~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeL--K~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~ee 97 (535)
..|..++..|.++..++..+..++..+...+..+..++..+ ...+..--..+......+.....++............
T Consensus 742 ~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~ 821 (1353)
T TIGR02680 742 RRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAA 821 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555444333 2223333333444444444444444444444444444
Q ss_pred HHHHHHHHHhhhhhh
Q 048095 98 ELGLLQKRVGECNCE 112 (535)
Q Consensus 98 EL~~lqk~l~E~~~e 112 (535)
.+......+.+.+.+
T Consensus 822 ~~~~a~~~l~~aaa~ 836 (1353)
T TIGR02680 822 AWKQARRELERDAAD 836 (1353)
T ss_pred HHHHHHHHHHHHHhc
Confidence 444444444444443
No 292
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=44.64 E-value=1.9e+02 Score=24.32 Aligned_cols=21 Identities=14% Similarity=0.294 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 048095 31 ESKGELALVQKEIEECNSELW 51 (535)
Q Consensus 31 ElEkqle~Laek~~Elk~EL~ 51 (535)
++++.++.++.+...+..+..
T Consensus 30 ~~~~ti~~l~~~~~~i~~e~~ 50 (90)
T PF06103_consen 30 EVNKTIDTLQEQVDPITKEIN 50 (90)
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 333333333333333333333
No 293
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=44.59 E-value=5.3e+02 Score=29.48 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=7.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 048095 10 GFNLKLQCKERQLRFLEKRIG 30 (535)
Q Consensus 10 ~~~~KL~~te~dLerved~i~ 30 (535)
+.+..|...+.++..+.+.+.
T Consensus 108 ~ie~~l~~iE~~i~~il~~l~ 128 (570)
T COG4477 108 DIEQQLTLIEEDIEQILEDLN 128 (570)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 294
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=44.58 E-value=4.1e+02 Score=31.65 Aligned_cols=52 Identities=19% Similarity=0.164 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 048095 19 ERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGE 70 (535)
Q Consensus 19 e~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~e 70 (535)
..-+++-...+.+...+++.+-.++.+...+++....++..++.++.....+
T Consensus 496 ~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~ 547 (771)
T TIGR01069 496 HFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKE 547 (771)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554444444444444444443333333333333
No 295
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=44.57 E-value=4.2e+02 Score=29.46 Aligned_cols=64 Identities=9% Similarity=-0.097 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 41 KEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQK 104 (535)
Q Consensus 41 ek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk 104 (535)
-+++.+..+..++...+..++..++.+.++..+....++.+.-++...+......-..|.+.++
T Consensus 304 mr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ 367 (502)
T KOG0982|consen 304 MRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQE 367 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444555555555555555555665555555555554444444444433
No 296
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=44.23 E-value=5.9e+02 Score=29.83 Aligned_cols=49 Identities=10% Similarity=0.142 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 048095 20 RQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCN 68 (535)
Q Consensus 20 ~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e 68 (535)
.-|.|++-.-..+.=|..-|++++......|..||-=|+..+..+...+
T Consensus 111 erLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatE 159 (861)
T KOG1899|consen 111 ERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATE 159 (861)
T ss_pred HHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHH
Confidence 3444444444445555555566666655556655555544444443333
No 297
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=44.05 E-value=4.5e+02 Score=28.42 Aligned_cols=170 Identities=10% Similarity=0.169 Sum_probs=0.0
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH------------
Q 048095 5 TNEIRGFNLKLQCKERQLRFLEKRIGESKGELALV---------QKEIEECNSELWCKEKELGLVQKR------------ 63 (535)
Q Consensus 5 ~~~~~~~~~KL~~te~dLerved~i~ElEkqle~L---------aek~~Elk~EL~~LE~eLeeLK~e------------ 63 (535)
++.++-+..+|...+.+|...+..+.....+..-+ ..++..+..++.....++......
T Consensus 170 ~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (444)
T TIGR03017 170 QKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDALPE 249 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchh
Q ss_pred ------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHhhhhhhhHHHHHhhhhhh
Q 048095 64 ------IRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCEL-ECKQQQLGLAQSEEDLLKNSLKN 136 (535)
Q Consensus 64 ------IeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el-~~k~~~~~~~~~~~~l~~~~~k~ 136 (535)
|..+..++...+.++..+........-.+..+..++..++..+......+ .+.............-..
T Consensus 250 ~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~----- 324 (444)
T TIGR03017 250 VIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELR----- 324 (444)
T ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 048095 137 SIEHWSQKLNLTKEELSLLQKSIRECKGELDSKERQLAVVQKRIGE 182 (535)
Q Consensus 137 ~v~~~~~~~~~~~~eL~~~~k~i~e~~~EL~~Kek~le~~~k~~~~ 182 (535)
.-.++.......+............+.+..+..|+..-..++.
T Consensus 325 ---~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e 367 (444)
T TIGR03017 325 ---EALENQKAKVLELNRQRDEMSVLQRDVENAQRAYDAAMQRYTQ 367 (444)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 298
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=43.85 E-value=5.2e+02 Score=29.10 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=17.1
Q ss_pred HHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 048095 263 IQSSIEECEKELAIKERHISDYEEKLKAKEKL 294 (535)
Q Consensus 263 ~~~~~e~~~kel~~ke~~i~~~e~el~~~~k~ 294 (535)
-.+.++.+..+-+.++++|=+.+.+|+-+++.
T Consensus 476 t~SALdlLkrEKe~~EqefLslqeEfQk~eke 507 (527)
T PF15066_consen 476 TTSALDLLKREKETREQEFLSLQEEFQKHEKE 507 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555555443
No 299
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=43.83 E-value=2.8e+02 Score=31.13 Aligned_cols=33 Identities=12% Similarity=-0.015 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048095 37 ALVQKEIEECNSELWCKEKELGLVQKRIRGCNG 69 (535)
Q Consensus 37 e~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~ 69 (535)
.+|..++.+.+.++..+..+=+.++.+.+.++.
T Consensus 62 rTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 62 RTLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443334333333333
No 300
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=43.75 E-value=3.3e+02 Score=26.89 Aligned_cols=6 Identities=33% Similarity=0.219 Sum_probs=2.1
Q ss_pred HHHHHH
Q 048095 34 GELALV 39 (535)
Q Consensus 34 kqle~L 39 (535)
+++++.
T Consensus 88 ~~L~~~ 93 (203)
T KOG3433|consen 88 SQLATG 93 (203)
T ss_pred HHHHHh
Confidence 333333
No 301
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=43.67 E-value=4.2e+02 Score=28.04 Aligned_cols=91 Identities=19% Similarity=0.172 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 20 RQLRFLEKRIGESKGELALVQKEIEECNSE----LWCKEKEL----GLVQKRIRGCNGELQSKQGELALVEKEIEESNSE 91 (535)
Q Consensus 20 ~dLerved~i~ElEkqle~Laek~~Elk~E----L~~LE~eL----eeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~E 91 (535)
.++..+.-.|+.+..+-..-..+|.+=..- ...|...+ +.+...|.+..+++..+..+-..+.++++.-+..
T Consensus 6 ~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~ 85 (305)
T PF14915_consen 6 DEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQN 85 (305)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHH
Confidence 345555555555555444444444443333 33344333 4556677777777777776666666666666666
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 048095 92 LQSKEIELGLLQKRVGECN 110 (535)
Q Consensus 92 l~~~eeEL~~lqk~l~E~~ 110 (535)
...++-++......+....
T Consensus 86 kerLEtEiES~rsRLaaAi 104 (305)
T PF14915_consen 86 KERLETEIESYRSRLAAAI 104 (305)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666655554443333
No 302
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=43.42 E-value=3.4e+02 Score=26.90 Aligned_cols=89 Identities=16% Similarity=0.205 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 19 ERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIE 98 (535)
Q Consensus 19 e~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeE 98 (535)
-..|..++=....++.+...+...+..-......|..++.-...+-..+...-...+.+...+..+-...+..+..+..+
T Consensus 97 t~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~q 176 (192)
T PF11180_consen 97 TARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQ 176 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666667777777777777777777888888888777766666666666666666666666655555555555555
Q ss_pred HHHHHHHHh
Q 048095 99 LGLLQKRVG 107 (535)
Q Consensus 99 L~~lqk~l~ 107 (535)
+..++...+
T Consensus 177 v~~Lq~q~~ 185 (192)
T PF11180_consen 177 VRQLQRQAN 185 (192)
T ss_pred HHHHHHHhc
Confidence 555555443
No 303
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=43.42 E-value=2.8e+02 Score=31.17 Aligned_cols=6 Identities=0% Similarity=-0.058 Sum_probs=3.3
Q ss_pred hhhhhh
Q 048095 501 AENSRM 506 (535)
Q Consensus 501 ieAv~~ 506 (535)
++||++
T Consensus 439 FdAVyV 444 (472)
T TIGR03752 439 FDAVYV 444 (472)
T ss_pred ccEEEe
Confidence 666543
No 304
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=43.39 E-value=2.8e+02 Score=32.58 Aligned_cols=33 Identities=18% Similarity=0.400 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 048095 14 KLQCKERQLRFLEKRIGESKGELALVQKEIEEC 46 (535)
Q Consensus 14 KL~~te~dLerved~i~ElEkqle~Laek~~El 46 (535)
|.+.+.+-++.+++.+.+++.++......+...
T Consensus 261 k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~f 293 (726)
T PRK09841 261 QAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVY 293 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333333
No 305
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=43.07 E-value=4.2e+02 Score=28.78 Aligned_cols=72 Identities=21% Similarity=0.247 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 048095 18 KERQLRFLEKRIGESKGELALVQKEIEECNSELWCK----EKELGLVQKRIRGCNGELQSKQGELALVEKEIEESN 89 (535)
Q Consensus 18 te~dLerved~i~ElEkqle~Laek~~Elk~EL~~L----E~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e 89 (535)
+++-|..+.+.+..++..+..+...+.+...+.... ...+...+..|.++-.+|..++..-...+.-|.++-
T Consensus 16 ~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it 91 (383)
T PF04100_consen 16 DEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEIT 91 (383)
T ss_pred ChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777766666655554422 122344444444444444444444444444444333
No 306
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=42.97 E-value=3.3e+02 Score=28.80 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 048095 40 QKEIEECNSELWCKEKEL 57 (535)
Q Consensus 40 aek~~Elk~EL~~LE~eL 57 (535)
..++.+...++...+..+
T Consensus 176 ~~ql~~~~~~l~~ae~~l 193 (362)
T TIGR01010 176 ENEVKEAEQRLNATKAEL 193 (362)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 307
>PRK11519 tyrosine kinase; Provisional
Probab=42.79 E-value=4.2e+02 Score=31.10 Aligned_cols=30 Identities=20% Similarity=0.438 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 048095 14 KLQCKERQLRFLEKRIGESKGELALVQKEI 43 (535)
Q Consensus 14 KL~~te~dLerved~i~ElEkqle~Laek~ 43 (535)
|.+.+.+-++.+++.+.+++.+++.....+
T Consensus 261 k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l 290 (719)
T PRK11519 261 KSEEASKSLAFLAQQLPEVRSRLDVAENKL 290 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443333
No 308
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=42.61 E-value=5.5e+02 Score=29.10 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 048095 150 EELSLLQKSIRECKGELDSKERQLAVVQKR 179 (535)
Q Consensus 150 ~eL~~~~k~i~e~~~EL~~Kek~le~~~k~ 179 (535)
-+|+.+...++.....+..-...++.++.+
T Consensus 280 ~~l~d~~~~l~~~~~~l~~dp~~L~ele~R 309 (563)
T TIGR00634 280 TEVEEATRELQNYLDELEFDPERLNEIEER 309 (563)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 333444444444333333333344443333
No 309
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=42.61 E-value=2.1e+02 Score=26.78 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=11.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 048095 59 LVQKRIRGCNGELQSKQGELALVEKEIEESN 89 (535)
Q Consensus 59 eLK~eIeE~e~eIe~~qkeIe~le~eIee~e 89 (535)
.++.++...+..++.....|..+++.+....
T Consensus 45 lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~ 75 (160)
T PF13094_consen 45 LLQEEIEKEEAALERDYEYLQELEKNAKALE 75 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 310
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=42.48 E-value=6.2e+02 Score=30.20 Aligned_cols=13 Identities=8% Similarity=0.184 Sum_probs=6.7
Q ss_pred HhHHHHHHHHhhh
Q 048095 393 IIKRTCILLLEQL 405 (535)
Q Consensus 393 ~~r~~CilLLE~L 405 (535)
..|.+.--.|...
T Consensus 746 ~Lr~~v~~~L~~~ 758 (782)
T PRK00409 746 KLRKGVQEFLKKH 758 (782)
T ss_pred HHHHHHHHHHcCC
Confidence 4555555555544
No 311
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=42.30 E-value=6.5e+02 Score=29.77 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 048095 20 RQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEI 85 (535)
Q Consensus 20 ~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eI 85 (535)
..|..+.....++++.+.++..+......++.....+-+.++.++.....+++....-+..+...|
T Consensus 162 ~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~Yv 227 (739)
T PF07111_consen 162 EALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYV 227 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544444555555555555555555555555555544444444444
No 312
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=42.13 E-value=3.6e+02 Score=26.74 Aligned_cols=43 Identities=7% Similarity=0.064 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 15 LQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKEL 57 (535)
Q Consensus 15 L~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eL 57 (535)
+.+.+.+|..+...+..+-.....+..+|.++...+...+..-
T Consensus 33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A 75 (219)
T TIGR02977 33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKA 75 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555554444555555555555555555444
No 313
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=41.87 E-value=6.5e+02 Score=29.68 Aligned_cols=41 Identities=24% Similarity=0.311 Sum_probs=24.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 048095 143 QKLNLTKEELSLLQKSIRECKGELDSKERQLAVVQKRIGEC 183 (535)
Q Consensus 143 ~~~~~~~~eL~~~~k~i~e~~~EL~~Kek~le~~~k~~~~~ 183 (535)
+.+..+.++-+.....|....+++..-+.+=+.+..+++.+
T Consensus 489 q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e~~ 529 (716)
T KOG4593|consen 489 QSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLERR 529 (716)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556566667777777777666666665444443
No 314
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=41.74 E-value=1.9e+02 Score=29.70 Aligned_cols=41 Identities=7% Similarity=0.216 Sum_probs=17.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 61 QKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGL 101 (535)
Q Consensus 61 K~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~ 101 (535)
..+|+.++.+|..++..++...-+++.++.+.+....+|+.
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444
No 315
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=41.45 E-value=2.7e+02 Score=31.92 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHHhcc
Q 048095 415 QVRDEAMKMAGEWKKKMG 432 (535)
Q Consensus 415 ~vkeeA~~lA~~WK~~i~ 432 (535)
..+..+.+=...|+.++.
T Consensus 517 a~~~~~~~~~~~~~~~l~ 534 (555)
T TIGR03545 517 AFKKEIAAQIEKAKAKLK 534 (555)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444455555553
No 316
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=41.30 E-value=2.2e+02 Score=24.13 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=8.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q 048095 25 LEKRIGESKGELALVQKEIEEC 46 (535)
Q Consensus 25 ved~i~ElEkqle~Laek~~El 46 (535)
+.+.++-|..+++.+...+..+
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~ 23 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSY 23 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333333
No 317
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=40.92 E-value=91 Score=31.57 Aligned_cols=86 Identities=19% Similarity=0.178 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 14 KLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQ 93 (535)
Q Consensus 14 KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~ 93 (535)
+++..-..|..+. .+...+-+-+.++.+|..+..+++.++.....+..-+..-. . -.++-.++.+|.+.+.++.
T Consensus 106 ~~~~~l~~l~~~g-~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~-~----~~d~l~ie~~L~~v~~eIe 179 (262)
T PF14257_consen 106 KFDSFLDELSELG-KVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAK-T----VEDLLEIERELSRVRSEIE 179 (262)
T ss_pred HHHHHHHHHhccC-ceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C----HHHHHHHHHHHHHHHHHHH
Confidence 4444444444333 33333444455577777777777777777766655444221 1 1233444444444444444
Q ss_pred HHHHHHHHHHHH
Q 048095 94 SKEIELGLLQKR 105 (535)
Q Consensus 94 ~~eeEL~~lqk~ 105 (535)
.++.++..+.+.
T Consensus 180 ~~~~~~~~l~~~ 191 (262)
T PF14257_consen 180 QLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHHHHh
Confidence 444444444443
No 318
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=40.88 E-value=2.5e+02 Score=26.30 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 048095 78 LALVEKEIEESNSELQSKEIELGLLQKRVGECNC 111 (535)
Q Consensus 78 Ie~le~eIee~e~El~~~eeEL~~lqk~l~E~~~ 111 (535)
+..++.+|...+..+......|..+++.+.....
T Consensus 43 l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~ 76 (160)
T PF13094_consen 43 LELLQEEIEKEEAALERDYEYLQELEKNAKALER 76 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 319
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=40.71 E-value=2.7e+02 Score=30.63 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=11.1
Q ss_pred CCCChhHHHHHHHHHHHHHHhcc
Q 048095 410 PDINPQVRDEAMKMAGEWKKKMG 432 (535)
Q Consensus 410 p~i~~~vkeeA~~lA~~WK~~i~ 432 (535)
|.-+...-++...++..|=..++
T Consensus 291 ~e~s~~~~~~~l~~~~~i~~~Lg 313 (425)
T PRK05431 291 PEDSYAELEELTANAEEILQKLE 313 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 33334444445555555555554
No 320
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=40.68 E-value=1e+02 Score=26.66 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=12.3
Q ss_pred chhhhhhhHHHHHHHHHHHHHHH
Q 048095 7 EIRGFNLKLQCKERQLRFLEKRI 29 (535)
Q Consensus 7 ~~~~~~~KL~~te~dLerved~i 29 (535)
+|.+...+|.+...+|++|+..+
T Consensus 6 eId~lEekl~~cr~~le~ve~rL 28 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRL 28 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555444
No 321
>PF14282 FlxA: FlxA-like protein
Probab=40.30 E-value=2.1e+02 Score=25.28 Aligned_cols=11 Identities=9% Similarity=0.250 Sum_probs=3.9
Q ss_pred hHHHHHHHHHH
Q 048095 31 ESKGELALVQK 41 (535)
Q Consensus 31 ElEkqle~Lae 41 (535)
.+++++..|..
T Consensus 23 ~L~~Qi~~Lq~ 33 (106)
T PF14282_consen 23 QLQKQIKQLQE 33 (106)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 322
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=40.15 E-value=4.6e+02 Score=27.40 Aligned_cols=55 Identities=15% Similarity=0.171 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 048095 19 ERQLRFLEKRIGESKGELALV-------QKEIEECNSELWCKEKELGLVQKRIRGCNGELQS 73 (535)
Q Consensus 19 e~dLerved~i~ElEkqle~L-------aek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~ 73 (535)
..+|..|-|.+.-+-.++..+ -+.|+..-+.|...|..+.-.+..-..+..+|..
T Consensus 95 dddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~k 156 (271)
T PF13805_consen 95 DDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAK 156 (271)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHH
Confidence 345555555555555555444 3344444455555555554444444444444433
No 323
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=39.57 E-value=2.3e+02 Score=23.82 Aligned_cols=54 Identities=11% Similarity=0.133 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048095 54 EKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVG 107 (535)
Q Consensus 54 E~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~ 107 (535)
...+..++.++..+..+....-.+.+.+...++...............+.+.++
T Consensus 32 ~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~ 85 (90)
T PF06103_consen 32 NKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVS 85 (90)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333333333333333333333344444444444444444444444444443333
No 324
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=39.53 E-value=58 Score=28.71 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHhhhhhhhHHHHHhcCCc
Q 048095 440 EVLGFLHLLAAYRLAPAFDGNELESLLDIVAHYRQTAKLRQSLGFA 485 (535)
Q Consensus 440 ea~gFL~lla~fgi~s~Fd~del~~Lv~~va~~~~~~~L~~sLGL~ 485 (535)
...-|.+++--||..+....++++.|+..++.+.-|+...+.+|-.
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~ 73 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAV 73 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHH
Confidence 4567889999999999999999999999999999999999999944
No 325
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=39.00 E-value=3.9e+02 Score=26.29 Aligned_cols=18 Identities=6% Similarity=0.121 Sum_probs=6.6
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 048095 22 LRFLEKRIGESKGELALV 39 (535)
Q Consensus 22 Lerved~i~ElEkqle~L 39 (535)
+.||...+--++..++.+
T Consensus 74 iarvA~lvinlE~kvD~l 91 (189)
T TIGR02132 74 IANVASLVINLEEKVDLI 91 (189)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 326
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=38.91 E-value=1.8e+02 Score=24.57 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=21.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 25 LEKRIGESKGELALVQKEIEECNSELWCKEKEL 57 (535)
Q Consensus 25 ved~i~ElEkqle~Laek~~Elk~EL~~LE~eL 57 (535)
+.+.|..++.++..+.-.|.++..+|..+....
T Consensus 15 Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~ 47 (79)
T PF06657_consen 15 LSEVLKALQDEFGHMKMEHQELQDEYKQMDPSL 47 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 355666666666666666666666666666655
No 327
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=38.74 E-value=4.3e+02 Score=26.75 Aligned_cols=84 Identities=10% Similarity=0.105 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 18 KERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEI 97 (535)
Q Consensus 18 te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~ee 97 (535)
....++.+.+.+......+......+..+..++..+..+...+..+..................-..-.++...+.....
T Consensus 22 l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~ 101 (264)
T PF06008_consen 22 LLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQD 101 (264)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333344444444444444444443333333333333333333333333333333333333
Q ss_pred HHHH
Q 048095 98 ELGL 101 (535)
Q Consensus 98 EL~~ 101 (535)
.+..
T Consensus 102 ~i~~ 105 (264)
T PF06008_consen 102 NIQE 105 (264)
T ss_pred HHHH
Confidence 3333
No 328
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=38.67 E-value=7.4e+02 Score=29.40 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHhHHHhhhhh
Q 048095 165 ELDSKERQLAVVQKRIGECNNELQLKENELNL 196 (535)
Q Consensus 165 EL~~Kek~le~~~k~~~~~~~~l~~k~k~l~~ 196 (535)
-|-.|.|+-+-+.+..+..+-.|++.+..|..
T Consensus 478 KLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~ 509 (961)
T KOG4673|consen 478 KLRAKIKEAETLEEKKGELITKLQSEENKLKS 509 (961)
T ss_pred HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555544
No 329
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=38.28 E-value=3.9e+02 Score=26.08 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhH
Q 048095 56 ELGLVQKRIRGCNGELQSKQGELALVEKEIEE-SNSELQSKEIELGLLQKRVGECNCEL 113 (535)
Q Consensus 56 eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee-~e~El~~~eeEL~~lqk~l~E~~~el 113 (535)
.+..++.++.++...+.......+.++....+ ...+......+++.++.....+..+|
T Consensus 128 ~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 128 EIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444443444444333332 22333344555556555544444444
No 330
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=38.21 E-value=2.7e+02 Score=26.82 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 048095 53 KEKELGLVQKRIRGCNGEL 71 (535)
Q Consensus 53 LE~eLeeLK~eIeE~e~eI 71 (535)
|+.++..+..++..++.++
T Consensus 123 Le~e~~~L~~~~~~~~eDY 141 (161)
T TIGR02894 123 LEKELEKLRQRLSTIEEDY 141 (161)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 331
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=38.18 E-value=1.7e+02 Score=23.42 Aligned_cols=20 Identities=35% Similarity=0.418 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 048095 38 LVQKEIEECNSELWCKEKEL 57 (535)
Q Consensus 38 ~Laek~~Elk~EL~~LE~eL 57 (535)
.|..++..+..++..++..|
T Consensus 8 rL~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 8 RLEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 332
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=38.13 E-value=4e+02 Score=26.21 Aligned_cols=80 Identities=16% Similarity=0.178 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhh
Q 048095 43 IEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQQQLGL 122 (535)
Q Consensus 43 ~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~~~~~~ 122 (535)
++.+..++.+.+.-+.+....+..-+................+..+..-+......+.....-......+|..|...++-
T Consensus 69 veqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLea 148 (188)
T PF05335_consen 69 VEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEA 148 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444455555555555555555555555555555555555555555555555544443
No 333
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.64 E-value=2.4e+02 Score=23.56 Aligned_cols=47 Identities=19% Similarity=0.163 Sum_probs=29.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 048095 65 RGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNC 111 (535)
Q Consensus 65 eE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~ 111 (535)
+.++.+|...-..|..+.-+|++++...+.+..+.+..+.....+..
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~ 53 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALER 53 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence 44556666666777777777777777766666666666555433333
No 334
>PHA03332 membrane glycoprotein; Provisional
Probab=37.36 E-value=9e+02 Score=30.10 Aligned_cols=59 Identities=12% Similarity=0.210 Sum_probs=34.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHH
Q 048095 22 LRFLEKRIGESKGELALVQKEIEECNSELWCKEKEL----GLVQKRIRGCNGELQSKQGELAL 80 (535)
Q Consensus 22 Lerved~i~ElEkqle~Laek~~Elk~EL~~LE~eL----eeLK~eIeE~e~eIe~~qkeIe~ 80 (535)
|-+....|.++.+.+..+...+..+...+..+-..| ..+.+.|.+.++.|+.++.+++.
T Consensus 886 llqnaaaia~mksaIg~tNaAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~ 948 (1328)
T PHA03332 886 LLQATAATAEMASKIGGLNARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNL 948 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHH
Confidence 333444555566666666666666555555555555 34466677777777666666554
No 335
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=37.17 E-value=5e+02 Score=27.02 Aligned_cols=96 Identities=23% Similarity=0.274 Sum_probs=61.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhHHHHHhhhhhhhH
Q 048095 59 LVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQQQLGLAQSEEDLLKNSLKNSI 138 (535)
Q Consensus 59 eLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~~~~~~~~~~~~l~~~~~k~~v 138 (535)
.++..|.....+++..+..++.+...-..++..+..+..+|++.++.+..+. + +.
T Consensus 166 ~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq----~------------------vR--- 220 (267)
T PF10234_consen 166 ALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ----S------------------VR--- 220 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h------------------cC---
Confidence 3456666666666666666666666666666666666666666665542211 1 11
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 048095 139 EHWSQKLNLTKEELSLLQKSIRECKGELDSKERQLAVVQKR 179 (535)
Q Consensus 139 ~~~~~~~~~~~~eL~~~~k~i~e~~~EL~~Kek~le~~~k~ 179 (535)
=-|-.++...+.+|..+=..--+++..|.--|.|++..+..
T Consensus 221 PAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~~~~ 261 (267)
T PF10234_consen 221 PAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEYNRR 261 (267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 02335555666777788888888888888888888876655
No 336
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=37.09 E-value=4.4e+02 Score=26.34 Aligned_cols=89 Identities=22% Similarity=0.206 Sum_probs=43.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 22 LRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGL 101 (535)
Q Consensus 22 Lerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~ 101 (535)
+..+...+.+.+.....+..+|.++.........-+.++...|..+-++ .+.........|.....++..+...|..
T Consensus 11 ~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e---~~~~~~~~~~~i~~~~~erdq~~~dL~s 87 (207)
T PF05010_consen 11 IKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEE---KQKQKELSEAEIQKLLKERDQAYADLNS 87 (207)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHhhHHhHHHHHHHHHhhHHHHHHHHHH
Confidence 3344444444455555555555555555555555554444444433222 3333444445555555555555555555
Q ss_pred HHHHHhhhhhhH
Q 048095 102 LQKRVGECNCEL 113 (535)
Q Consensus 102 lqk~l~E~~~el 113 (535)
+...+.++-...
T Consensus 88 ~E~sfsdl~~ry 99 (207)
T PF05010_consen 88 LEKSFSDLHKRY 99 (207)
T ss_pred HHhhHHHHHHHH
Confidence 555555444444
No 337
>PHA03011 hypothetical protein; Provisional
Probab=36.99 E-value=3e+02 Score=24.64 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 42 EIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNS 90 (535)
Q Consensus 42 k~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~ 90 (535)
.++++..++..+-.+++-+.+++.....-++....++..+.++|+.++.
T Consensus 65 ~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~ 113 (120)
T PHA03011 65 ILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKE 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444444555555556666665555543
No 338
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=36.91 E-value=4.9e+02 Score=26.79 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHHHHHH
Q 048095 14 KLQCKERQLRFLEKRI 29 (535)
Q Consensus 14 KL~~te~dLerved~i 29 (535)
.|...+.+|......+
T Consensus 81 ~l~~a~a~l~~~~~~~ 96 (334)
T TIGR00998 81 ALAKAEANLAALVRQT 96 (334)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444333333
No 339
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=36.72 E-value=21 Score=31.88 Aligned_cols=48 Identities=19% Similarity=0.177 Sum_probs=14.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 048095 25 LEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQ 72 (535)
Q Consensus 25 ved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe 72 (535)
|.+-|..+...+..|..++.++..++..+...+..++.....+...+.
T Consensus 23 VD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~ 70 (131)
T PF05103_consen 23 VDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALI 70 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhh
Confidence 444444444444444444444444444444444444444444443333
No 340
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=36.67 E-value=1.2e+02 Score=31.16 Aligned_cols=35 Identities=6% Similarity=0.133 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 048095 40 QKEIEECNSELWCKEKELGLVQKRIRGCNGELQSK 74 (535)
Q Consensus 40 aek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~ 74 (535)
.++|..+..++..+..++..+..+|.+.+.++..+
T Consensus 179 ~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~ 213 (259)
T PF08657_consen 179 REKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERM 213 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444
No 341
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=36.61 E-value=2.6e+02 Score=23.52 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 20 RQLRFLEKRIGESKGELALVQKEIEECNSELWCKEK 55 (535)
Q Consensus 20 ~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~ 55 (535)
-.|+++.+.+.++...-..|...++....++..+..
T Consensus 14 P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~ 49 (92)
T PF14712_consen 14 PDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNE 49 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555544433
No 342
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=36.55 E-value=3.9e+02 Score=29.27 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=11.2
Q ss_pred CCCChhHHHHHHHHHHHHHHhcc
Q 048095 410 PDINPQVRDEAMKMAGEWKKKMG 432 (535)
Q Consensus 410 p~i~~~vkeeA~~lA~~WK~~i~ 432 (535)
|.-+...-++-..++..|=..++
T Consensus 293 ~e~s~~~~~~~~~~~~~i~~~Lg 315 (418)
T TIGR00414 293 PEESAEELEEMTSDAEQILQELE 315 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 33333444445555555555554
No 343
>PHA03011 hypothetical protein; Provisional
Probab=36.19 E-value=2.8e+02 Score=24.76 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 048095 32 SKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEK 83 (535)
Q Consensus 32 lEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~ 83 (535)
+-.+++.|..+|.++..++..++.++..+..-|.+-..++--++.++..+..
T Consensus 62 i~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~ 113 (120)
T PHA03011 62 IIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKE 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433333333333334444433333
No 344
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=36.00 E-value=3.1e+02 Score=24.34 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048095 75 QGELALVEKEIEESNSELQSKEIELGLLQKRVGEC 109 (535)
Q Consensus 75 qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~ 109 (535)
...+..++..+..+...+......+..+++.++.+
T Consensus 85 ~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i 119 (126)
T TIGR00293 85 EEAIEFLKKRIEELEKAIEKLQEALAELASRAQQL 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444433
No 345
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=35.88 E-value=6.8e+02 Score=28.16 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhhHHHhHHHhhhhhHHHHHHHHHHHhh
Q 048095 171 RQLAVVQKRIGECNNELQLKENELNLVKTVVEHCLQKLN 209 (535)
Q Consensus 171 k~le~~~k~~~~~~~~l~~k~k~l~~~~~~~~~~~kele 209 (535)
.++..++.++.....+++..+-++..-...++...++++
T Consensus 288 ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~ 326 (511)
T PF09787_consen 288 EEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELS 326 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444444444445555555444444444444443
No 346
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.99 E-value=7.6e+02 Score=28.45 Aligned_cols=25 Identities=4% Similarity=-0.280 Sum_probs=14.9
Q ss_pred hhhHHhHHHHhhhCCCchhHHHHHh
Q 048095 350 DLIFGQISQTLTKACDPALLVLDAM 374 (535)
Q Consensus 350 ~~lr~Ev~~AL~~A~DPAkLVLdai 374 (535)
--+-....+|+..+|+|+--|.-.+
T Consensus 612 ~ql~~~~~~~~~~~~ln~~d~~~~~ 636 (654)
T KOG4809|consen 612 FQLVSIGLAAVAMDVLNTGDVVWLL 636 (654)
T ss_pred HHHHHHHHHhcccCCCCCCcccccc
Confidence 3445556677777777766554333
No 347
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=34.79 E-value=4.5e+02 Score=25.78 Aligned_cols=36 Identities=33% Similarity=0.375 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 56 ELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSE 91 (535)
Q Consensus 56 eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~E 91 (535)
++..+...|..+..++++++......+++|..+.+-
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~ 115 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSA 115 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555666666655555544
No 348
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=34.51 E-value=75 Score=26.32 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=18.8
Q ss_pred CChhHHHHHHHHHHHHHHhcc
Q 048095 412 INPQVRDEAMKMAGEWKKKMG 432 (535)
Q Consensus 412 i~~~vkeeA~~lA~~WK~~i~ 432 (535)
.+|.|...|+.|-..||..+.
T Consensus 54 ~~~~I~~~A~~Li~~WK~~v~ 74 (75)
T smart00509 54 KNEEIRKLAKKLIKSWKKLVY 74 (75)
T ss_pred CcHHHHHHHHHHHHHHHHHhc
Confidence 479999999999999998764
No 349
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=34.10 E-value=1.5e+02 Score=24.12 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048095 36 LALVQKEIEECNSELWCKEKEL 57 (535)
Q Consensus 36 le~Laek~~Elk~EL~~LE~eL 57 (535)
+..+...+.+...-+...+.++
T Consensus 27 i~~~e~~l~ea~~~l~qMe~E~ 48 (79)
T PF05008_consen 27 IREIERDLDEAEELLKQMELEV 48 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444
No 350
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=33.53 E-value=5e+02 Score=25.95 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=8.3
Q ss_pred HHHHHHHHhhHHHhHHHhhh
Q 048095 175 VVQKRIGECNNELQLKENEL 194 (535)
Q Consensus 175 ~~~k~~~~~~~~l~~k~k~l 194 (535)
-.+..+......|+-|.++-
T Consensus 172 k~e~~~~SLe~~LeQK~kEn 191 (207)
T PF05010_consen 172 KEEMKVQSLEESLEQKTKEN 191 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443
No 351
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=33.37 E-value=3e+02 Score=23.34 Aligned_cols=50 Identities=10% Similarity=0.138 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 43 IEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSEL 92 (535)
Q Consensus 43 ~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El 92 (535)
++.++.++..+..++...+..-.+.+..+...-.++..+...+-+++...
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h 55 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAH 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444554444444444444444444444444444444444333
No 352
>PF15294 Leu_zip: Leucine zipper
Probab=33.27 E-value=5.9e+02 Score=26.69 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 048095 81 VEKEIEESNSELQSKEIELGLLQKRVGECNCE 112 (535)
Q Consensus 81 le~eIee~e~El~~~eeEL~~lqk~l~E~~~e 112 (535)
+..+|..++.+...+..++..++.....+..|
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~E 161 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDE 161 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555554444433
No 353
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.12 E-value=5.5e+02 Score=26.25 Aligned_cols=11 Identities=27% Similarity=0.138 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 048095 93 QSKEIELGLLQ 103 (535)
Q Consensus 93 ~~~eeEL~~lq 103 (535)
...+.++...+
T Consensus 89 ~~ieqeik~~q 99 (246)
T KOG4657|consen 89 MGIEQEIKATQ 99 (246)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 354
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=33.09 E-value=2.4e+02 Score=22.96 Aligned_cols=27 Identities=30% Similarity=0.213 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 048095 14 KLQCKERQLRFLEKRIGESKGELALVQ 40 (535)
Q Consensus 14 KL~~te~dLerved~i~ElEkqle~La 40 (535)
+|.+.+..++...+.+..++.......
T Consensus 7 ~l~~ie~~l~~~~~~i~~lE~~~~~~e 33 (71)
T PF10779_consen 7 KLNRIETKLDNHEERIDKLEKRDAANE 33 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333443333333333333333333
No 355
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=32.70 E-value=1e+03 Score=29.33 Aligned_cols=212 Identities=11% Similarity=0.104 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHH----------------------------HHHHHH---HHHHHHHHHHHHHH
Q 048095 14 KLQCKERQLRFLEKRIGESKGELALVQKE----------------------------IEECNS---ELWCKEKELGLVQK 62 (535)
Q Consensus 14 KL~~te~dLerved~i~ElEkqle~Laek----------------------------~~Elk~---EL~~LE~eLeeLK~ 62 (535)
+.......+......+..+...+..+... +..+.. .+..+...+..+..
T Consensus 617 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1047)
T PRK10246 617 QRHELQGQIAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEEASWLATRQQEAQSWQQRQNELTALQNRIQQLTP 696 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhh------hHHHHHhhhhhh
Q 048095 63 RIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQQQLGLAQ------SEEDLLKNSLKN 136 (535)
Q Consensus 63 eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~~~~~~~~------~~~~l~~~~~k~ 136 (535)
.+....................+......+......+......+.....++......+...+ +......-.+..
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~f~~~~~~~~~~~~~ 776 (1047)
T PRK10246 697 LLETLPQSDDLPHSEETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQASVFDDQQAFLAALLDE 776 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCH
Q ss_pred -hHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhH----H------HHHHHHHHHHHHHhhHHHhHHHhhhhhHHHH---HH
Q 048095 137 -SIEHWSQKLNLTKEELSLLQKSIRECKGELDS----K------ERQLAVVQKRIGECNNELQLKENELNLVKTV---VE 202 (535)
Q Consensus 137 -~v~~~~~~~~~~~~eL~~~~k~i~e~~~EL~~----K------ek~le~~~k~~~~~~~~l~~k~k~l~~~~~~---~~ 202 (535)
.++.+.+.+..-...+...+..+..+...+.. + ...++.+...+.....+++.....++.++.. ..
T Consensus 777 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 856 (1047)
T PRK10246 777 ETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQGEIRQQLKQDA 856 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhHHHHHHHHHhhhccc
Q 048095 203 HCLQKLNLKKEELSLLQKSNGEW 225 (535)
Q Consensus 203 ~~~kele~k~~~~~~~~~~~~~~ 225 (535)
.+...+.....++..++..+..|
T Consensus 857 ~~~~~~~~~~~~~~~~~~~~~~~ 879 (1047)
T PRK10246 857 DNRQQQQALMQQIAQATQQVEDW 879 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 356
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=32.56 E-value=3.2e+02 Score=23.36 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=24.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 64 IRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQ 103 (535)
Q Consensus 64 IeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lq 103 (535)
++.++.+|...-..|..+.-+|++++..-..+..+.+.+.
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~ 45 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQ 45 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777777777666555555544433
No 357
>COG5293 Predicted ATPase [General function prediction only]
Probab=32.50 E-value=7.8e+02 Score=27.83 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048095 41 KEIEECNSELWCKEKELGLVQKRIRGC 67 (535)
Q Consensus 41 ek~~Elk~EL~~LE~eLeeLK~eIeE~ 67 (535)
++|.-+..++.++..+|.++..+|+.+
T Consensus 379 e~y~~l~ee~~~~~~elae~~~rie~l 405 (591)
T COG5293 379 EKYQTLCEEIIALRGELAELEYRIEPL 405 (591)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhHH
Confidence 345555555555555555555555444
No 358
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=32.37 E-value=3.5e+02 Score=29.00 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHH-HHHhHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 048095 15 LQCKERQLRFLEK-RIGESKGELALVQK--------------EIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELA 79 (535)
Q Consensus 15 L~~te~dLerved-~i~ElEkqle~Lae--------------k~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe 79 (535)
+.++++-+..+.| .+.|++..+...-- +++-++..+.+++.+|..-.++-.+...++.+....+.
T Consensus 106 ~iD~EAs~~e~~Dskv~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s 185 (405)
T KOG2010|consen 106 LIDPEASLSELRDSKVSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCS 185 (405)
T ss_pred ccChHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888 55888888776622 23445555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHH
Q 048095 80 LVEKEIEESNSEL 92 (535)
Q Consensus 80 ~le~eIee~e~El 92 (535)
.+....++++..+
T Consensus 186 ~Lq~~~~elKe~l 198 (405)
T KOG2010|consen 186 VLQHKMEELKEGL 198 (405)
T ss_pred HHHHHHHHHHHHH
Confidence 5554444444443
No 359
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=32.28 E-value=8.1e+02 Score=27.95 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhhhhhhHH
Q 048095 96 EIELGLLQKRVGECNCELE 114 (535)
Q Consensus 96 eeEL~~lqk~l~E~~~el~ 114 (535)
+.+|+.+.+.+.+.+..|.
T Consensus 486 E~QLs~MSEHLasmNeqL~ 504 (518)
T PF10212_consen 486 EEQLSMMSEHLASMNEQLA 504 (518)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 360
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=32.12 E-value=1.8e+02 Score=32.59 Aligned_cols=21 Identities=14% Similarity=-0.021 Sum_probs=12.4
Q ss_pred hhCCCchhHHHHHhcccCCCC
Q 048095 361 TKACDPALLVLDAMQGFYPPH 381 (535)
Q Consensus 361 ~~A~DPAkLVLdai~~f~~~~ 381 (535)
....||.-+||..+..-..|+
T Consensus 235 ~aq~nP~Pv~lRi~~~aiLPN 255 (475)
T PRK13729 235 TGNESTVPMQLRITGLVEMPN 255 (475)
T ss_pred cccCCCccEEEEEcccccCCC
Confidence 345666666666666554444
No 361
>PF13166 AAA_13: AAA domain
Probab=32.00 E-value=8.4e+02 Score=28.10 Aligned_cols=13 Identities=23% Similarity=0.238 Sum_probs=4.9
Q ss_pred HHHHHHHHhhhhh
Q 048095 99 LGLLQKRVGECNC 111 (535)
Q Consensus 99 L~~lqk~l~E~~~ 111 (535)
++.++..+.+.+.
T Consensus 372 i~~~n~~i~~~n~ 384 (712)
T PF13166_consen 372 IDELNELIEEHNE 384 (712)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 362
>PLN02678 seryl-tRNA synthetase
Probab=31.99 E-value=2.9e+02 Score=30.76 Aligned_cols=18 Identities=0% Similarity=0.010 Sum_probs=12.1
Q ss_pred CChhHHHHHHHHHHHHHH
Q 048095 412 INPQVRDEAMKMAGEWKK 429 (535)
Q Consensus 412 i~~~vkeeA~~lA~~WK~ 429 (535)
.|.+.==+|+++...||.
T Consensus 359 ~Snc~D~QaRRl~iryr~ 376 (448)
T PLN02678 359 CSNCTDYQSRRLEIRYGQ 376 (448)
T ss_pred ecccccHhhhcccceecc
Confidence 456666677777777774
No 363
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=31.95 E-value=5e+02 Score=25.42 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048095 70 ELQSKQGELALVEKEIEESNSEL 92 (535)
Q Consensus 70 eIe~~qkeIe~le~eIee~e~El 92 (535)
++.++..+|..++-+|..++++.
T Consensus 106 eL~s~~~ei~~L~~kI~~L~~~i 128 (181)
T PF04645_consen 106 ELKSIKKEIEILRLKISSLQKEI 128 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444333
No 364
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=31.91 E-value=5.7e+02 Score=28.05 Aligned_cols=31 Identities=23% Similarity=0.271 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 048095 80 LVEKEIEESNSELQSKEIELGLLQKRVGECN 110 (535)
Q Consensus 80 ~le~eIee~e~El~~~eeEL~~lqk~l~E~~ 110 (535)
.+..+...+..++..++.++..+...+++..
T Consensus 73 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (418)
T TIGR00414 73 EIKKELKELKEELTELSAALKALEAELQDKL 103 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333
No 365
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=31.33 E-value=3.4e+02 Score=23.35 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=7.9
Q ss_pred ccchhhhhhhHHHHHHHHH
Q 048095 5 TNEIRGFNLKLQCKERQLR 23 (535)
Q Consensus 5 ~~~~~~~~~KL~~te~dLe 23 (535)
|.++..+-..|+..=..|+
T Consensus 3 ~~~le~al~rL~~aid~LE 21 (89)
T PF13747_consen 3 TYSLEAALTRLEAAIDRLE 21 (89)
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 3444444444444333333
No 366
>PLN02320 seryl-tRNA synthetase
Probab=31.13 E-value=5.1e+02 Score=29.38 Aligned_cols=20 Identities=10% Similarity=0.341 Sum_probs=8.8
Q ss_pred ChhHHHHHHHHHHHHHHhcc
Q 048095 413 NPQVRDEAMKMAGEWKKKMG 432 (535)
Q Consensus 413 ~~~vkeeA~~lA~~WK~~i~ 432 (535)
+...-++-..+|.++=..++
T Consensus 357 s~~e~e~ll~~~e~i~~~Lg 376 (502)
T PLN02320 357 SESFHEELIQIEEDLFTSLG 376 (502)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 33334444444444444443
No 367
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=31.06 E-value=3e+02 Score=26.60 Aligned_cols=18 Identities=22% Similarity=0.110 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 048095 15 LQCKERQLRFLEKRIGES 32 (535)
Q Consensus 15 L~~te~dLerved~i~El 32 (535)
++.+.-.|-.+...|-..
T Consensus 68 ~d~~~P~ii~~~~~I~~Y 85 (184)
T PF05791_consen 68 LDTIKPQIIDLNQDIINY 85 (184)
T ss_dssp HHTHHHHHHHHHHHHHHH
T ss_pred HHHhcHHHHHHHHHHHHH
Confidence 444444444444444333
No 368
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=30.96 E-value=1e+03 Score=28.72 Aligned_cols=104 Identities=12% Similarity=0.156 Sum_probs=61.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHH
Q 048095 11 FNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGC-----NGELQSKQGELALVEKEI 85 (535)
Q Consensus 11 ~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~-----e~eIe~~qkeIe~le~eI 85 (535)
+..+|++.+++-++-...+.-...++.....-+-.+++-+..+-.-++++..++.++ .+..++.+..-.++...+
T Consensus 989 Lr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl~d~GV~AD~gAeeRA~~RRDELh~~L 1068 (1480)
T COG3096 989 LRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDIGVRADSGAEERARIRRDELHAQL 1068 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCcCcchHHHHHHHHHHHHHHH
Confidence 445677777777777777777777666666666666666666666666665555544 234444444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 048095 86 EESNSELQSKEIELGLLQKRVGECNCELE 114 (535)
Q Consensus 86 ee~e~El~~~eeEL~~lqk~l~E~~~el~ 114 (535)
....+.....++.|.........+++.+.
T Consensus 1069 st~RsRr~~~EkqlT~~E~E~~~L~~~~r 1097 (1480)
T COG3096 1069 STNRSRRNQLEKQLTFCEAEMDNLTRKLR 1097 (1480)
T ss_pred hccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555544444444443
No 369
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=30.73 E-value=3.9e+02 Score=29.40 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048095 81 VEKEIEESNSELQSKEIELGLLQKRVGE 108 (535)
Q Consensus 81 le~eIee~e~El~~~eeEL~~lqk~l~E 108 (535)
+..+...++.++..++.++..+...+.+
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444333
No 370
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=30.71 E-value=96 Score=25.62 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=17.9
Q ss_pred CChhHHHHHHHHHHHHHHhc
Q 048095 412 INPQVRDEAMKMAGEWKKKM 431 (535)
Q Consensus 412 i~~~vkeeA~~lA~~WK~~i 431 (535)
.+|.++..|+.|-..||..+
T Consensus 56 ~~~~i~~~A~~Lv~~Wk~~v 75 (76)
T cd00183 56 SNEKIRKLAKALIKSWKKLV 75 (76)
T ss_pred CcHHHHHHHHHHHHHHHHhc
Confidence 45999999999999999865
No 371
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=30.65 E-value=6.5e+02 Score=26.39 Aligned_cols=69 Identities=14% Similarity=0.090 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 048095 46 CNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELE 114 (535)
Q Consensus 46 lk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~ 114 (535)
+-.=+..|...++..+++-..+...-....+.+..--+.|+.-=.++..+..+...+.+.++..--+|+
T Consensus 88 ypaiisklsaavenak~e~~~id~~na~i~k~lAeeNqKIq~gi~EL~Kl~~e~~~l~kTi~~TIa~lE 156 (353)
T PF01540_consen 88 YPAIISKLSAAVENAKNEKKAIDDKNAQIDKKLAEENQKIQNGIEELKKLSNEAFELSKTINKTIAKLE 156 (353)
T ss_pred cHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334445555555555444444444444445556666677777777788888888888888888777777
No 372
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=30.37 E-value=5.7e+02 Score=25.65 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=0.0
Q ss_pred CccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHH
Q 048095 2 KTRTNEIRGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRG-CNGELQSKQGELAL 80 (535)
Q Consensus 2 ~~~~~~~~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE-~e~eIe~~qkeIe~ 80 (535)
+.|......+...++..-.++. +..-..+......+...+..+...+..++..+...+..... +......+.+.+..
T Consensus 55 k~R~E~~~~lq~~~e~~i~~~~--~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~ 132 (247)
T PF06705_consen 55 KRRVESNKKLQSKFEEQINNMQ--ERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNE 132 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhHHHHHHhhhhhhhHHHHHhhhhhhhHHHHHHhhhh-hHHHHHHHHHH
Q 048095 81 VEKEIEESNSELQSKEIEL-GLLQKRVGECNCELECKQQQLGLAQSEEDLLKNSLKNSIEHWSQKLNL-TKEELSLLQKS 158 (535)
Q Consensus 81 le~eIee~e~El~~~eeEL-~~lqk~l~E~~~el~~k~~~~~~~~~~~~l~~~~~k~~v~~~~~~~~~-~~~eL~~~~k~ 158 (535)
+...++.-...+...+..| +.+....+.+...+..=........+..+-.-+.+........++|+. -..++.+++..
T Consensus 133 l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~ 212 (247)
T PF06705_consen 133 LQEAFENERNEREEREENILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNA 212 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 048095 159 IR 160 (535)
Q Consensus 159 i~ 160 (535)
+.
T Consensus 213 l~ 214 (247)
T PF06705_consen 213 LA 214 (247)
T ss_pred HH
No 373
>TIGR02895 spore_sigI RNA polymerase sigma-I factor. Members of this sigma factor protein family are strictly limited to endospore-forming species in the Firmicutes lineage of bacteria, but are not universally present among such species. Sigma-I was shown to be induced by heat shock (PubMed:11157964) in Bacillus subtilis and is suggested by its phylogenetic profile to be connected to the program of sporulation (PubMed:16311624).
Probab=30.29 E-value=4.6e+02 Score=26.19 Aligned_cols=134 Identities=13% Similarity=0.183 Sum_probs=76.9
Q ss_pred HHHHhcccCCCCCCCCCCcchhhHhHHHHHHHHhhhhhcC--CCCChhHHHHHHHHHHHHHHhcccc--CCChHHHHHHH
Q 048095 370 VLDAMQGFYPPHSRKGDMEFDVSIIKRTCILLLEQLSNIA--PDINPQVRDEAMKMAGEWKKKMGVI--GENSLEVLGFL 445 (535)
Q Consensus 370 VLdai~~f~~~~~~~~~~~~~~~~~r~~CilLLE~L~~~~--p~i~~~vkeeA~~lA~~WK~~i~~~--~~~~lea~gFL 445 (535)
+.+|++.|=+..... -..+-...++..++-.+.-..+-. ..++....+....+...|..-.... ....-|..-|-
T Consensus 49 l~eAi~~yd~~kg~~-F~sya~~~Ir~~i~dylRk~~k~~~~v~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~eEI~~~~ 127 (218)
T TIGR02895 49 FNEAIESYDSNKGKS-FLSFAKLIIKRRLIDYIRKNQKYQNLLYLDEDYDENPLEFNKSMEEYRNEIENENRRLEILEYK 127 (218)
T ss_pred HHHHHHHCCCCCCCC-HHHHHHHHHHHHHHHHHHhcccccCeeeCCchHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 456777774432110 111222234444444444333111 1223333443445555555333221 22356888999
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHhhhhhhhHHHHHhcCCc-ccccchHHHhhhcCchhhhhhhhhcC
Q 048095 446 HLLAAYRLAPAFDGNELESLLDIVAHYRQTAKLRQSLGFA-DKVTVVPWSSIGMDQAENSRMNHGIG 511 (535)
Q Consensus 446 ~lla~fgi~s~Fd~del~~Lv~~va~~~~~~~L~~sLGL~-~K~~diV~~LI~~gqieAv~~~~~f~ 511 (535)
.-|.-|||. +-+|+..++.|+.+-.+|..+... -.=|++.+.|..++.++-=.++..++
T Consensus 128 ~~L~~~gi~-------~~dLv~~sPkh~d~r~~~i~ia~~~~~~~~l~~~l~~kk~LP~k~l~~~~~ 187 (218)
T TIGR02895 128 KLLKQFGIE-------FVELVKVSPKHRDTRKKAIKIAKVIVENEELLEYLIRKKKLPIKEIEERVR 187 (218)
T ss_pred HHHHHcCCc-------HHHHhhcCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCHHHHHHHcC
Confidence 999999995 667999999999888777665554 46678888888887666555555444
No 374
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=30.27 E-value=9.8e+02 Score=28.34 Aligned_cols=97 Identities=14% Similarity=0.063 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhHHHHHhhhhhh--hHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Q 048095 88 SNSELQSKEIELGLLQKRVGECNCELECKQQQLGLAQSEEDLLKNSLKN--SIEHWSQKLNLTKEELSLLQKSIRECKGE 165 (535)
Q Consensus 88 ~e~El~~~eeEL~~lqk~l~E~~~el~~k~~~~~~~~~~~~l~~~~~k~--~v~~~~~~~~~~~~eL~~~~k~i~e~~~E 165 (535)
+-+++...-..+..++.....+..++.-+...- .+++. +.++. .+..+.++.....+.+..+.-++.-....
T Consensus 452 ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~n---fklm~---e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~ 525 (698)
T KOG0978|consen 452 LLSEMETIGSAFEDMQEQNQKLLQELREKDDKN---FKLMS---ERIKANQKHKLLREEKSKLEEQILTLKASVDKLELK 525 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666666666664333111 11111 11111 11233345555555555555555555555
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHhHH
Q 048095 166 LDSKERQLAVVQKRIGECNNELQLK 190 (535)
Q Consensus 166 L~~Kek~le~~~k~~~~~~~~l~~k 190 (535)
+..-|.++.+....+.....++.-.
T Consensus 526 i~~leeq~~~lt~~~~~l~~el~~~ 550 (698)
T KOG0978|consen 526 IGKLEEQERGLTSNESKLIKELTTL 550 (698)
T ss_pred HHHHHHHHHHhhHhhhhhHHHHHHH
Confidence 5555556655555554444444433
No 375
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=30.11 E-value=4.6e+02 Score=24.49 Aligned_cols=102 Identities=15% Similarity=0.176 Sum_probs=54.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHhHHHHHHHH
Q 048095 9 RGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKR-------------IRGCNGELQSKQ 75 (535)
Q Consensus 9 ~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~e-------------IeE~e~eIe~~q 75 (535)
++....++...++|.-+...|...+..+..-..-|...+.++...++.+.+.+.. -.-...++....
T Consensus 4 e~a~rny~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae~k~~~~~a~~P~~~~~~~wqlkvr~a~ 83 (136)
T PF11570_consen 4 EVAERNYEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAEIKQDEFFANNPPHEYGRGWQLKVRRAQ 83 (136)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTT-TTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccCCCccccccHHHHHHHHHH
Confidence 4455556666777777776666666665555444666666666666666442100 001114555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 048095 76 GELALVEKEIEESNSELQSKEIELGLLQKRVGECN 110 (535)
Q Consensus 76 keIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~ 110 (535)
+.++.-+..+...+.++..+..+|...+.-+...+
T Consensus 84 ~dv~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~ 118 (136)
T PF11570_consen 84 KDVQNKQNKLKAAQKELNAADEELNRIQAALSQAM 118 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 66667777777777776666666666655543333
No 376
>PRK11020 hypothetical protein; Provisional
Probab=29.99 E-value=2.7e+02 Score=25.36 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 048095 19 ERQLRFLEKRIGESKGELALV 39 (535)
Q Consensus 19 e~dLerved~i~ElEkqle~L 39 (535)
+++|.++.|.++-++.++...
T Consensus 4 K~Eiq~L~drLD~~~~Klaaa 24 (118)
T PRK11020 4 KNEIKRLSDRLDAIRHKLAAA 24 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444444
No 377
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=29.86 E-value=7.9e+02 Score=27.09 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=16.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 048095 22 LRFLEKRIGESKGELALVQKEIEECNSEL 50 (535)
Q Consensus 22 Lerved~i~ElEkqle~Laek~~Elk~EL 50 (535)
|+-+-..+.|+..-...|.+.|+.++.++
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~ 290 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQI 290 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555444
No 378
>PLN02678 seryl-tRNA synthetase
Probab=29.66 E-value=3.8e+02 Score=29.84 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048095 80 LVEKEIEESNSELQSKEIELGLLQKRVGE 108 (535)
Q Consensus 80 ~le~eIee~e~El~~~eeEL~~lqk~l~E 108 (535)
.+..+...+..++..++.+++.++..+++
T Consensus 75 ~l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 75 ELIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444443
No 379
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=29.61 E-value=6.5e+02 Score=26.07 Aligned_cols=44 Identities=20% Similarity=0.403 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 14 KLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLV 60 (535)
Q Consensus 14 KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeL 60 (535)
+|++.+.+|..-+.. .++.+..|+.+.+.+...+.....++..|
T Consensus 64 ~l~~ak~eLqe~eek---~e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 64 QLQQAKAELQEWEEK---EESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555444332 23344444444444444444444444444
No 380
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=29.47 E-value=7.9e+02 Score=28.31 Aligned_cols=83 Identities=14% Similarity=0.251 Sum_probs=53.8
Q ss_pred hhhhHHHHH--HhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHH--HHHHHHHhhHHHhHHHhhhhhHHHHHHHHHHHhh
Q 048095 134 LKNSIEHWS--QKLNLTKEELSLLQKSIRECKGELDSKERQLAV--VQKRIGECNNELQLKENELNLVKTVVEHCLQKLN 209 (535)
Q Consensus 134 ~k~~v~~~~--~~~~~~~~eL~~~~k~i~e~~~EL~~Kek~le~--~~k~~~~~~~~l~~k~k~l~~~~~~~~~~~kele 209 (535)
+-.+|+.|. ++..-| ..|-.-|+.|+-....-|.-||+-.- --|.=-+....|+=|+|+=..+..-|..|+.+|+
T Consensus 57 lRdQIKtW~ss~dIKDK-~~L~d~RrlIE~~MErfK~vEke~KtKa~SkegL~~~~klDPkEkek~d~~~wi~~~ideLe 135 (575)
T KOG2150|consen 57 LRDQIKTWQSSSDIKDK-DSLLDNRRLIEQRMERFKAVEKEMKTKAFSKEGLSAAEKLDPKEKEKRDTMDWISNQIDELE 135 (575)
T ss_pred HHHHHHhhhcccccccH-HHHHHHHHHHHHHHHHHHHHHHHhhccccchhhccccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 444666884 777666 67778888888887777776664321 1122234456777788887777777888887776
Q ss_pred hHHHHHHHHHh
Q 048095 210 LKKEELSLLQK 220 (535)
Q Consensus 210 ~k~~~~~~~~~ 220 (535)
+++.+++.
T Consensus 136 ---~q~d~~ea 143 (575)
T KOG2150|consen 136 ---RQVDSFEA 143 (575)
T ss_pred ---HHHHHHHH
Confidence 44455554
No 381
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=29.08 E-value=1.3e+02 Score=27.64 Aligned_cols=21 Identities=19% Similarity=0.473 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHhccccCC
Q 048095 416 VRDEAMKMAGEWKKKMGVIGE 436 (535)
Q Consensus 416 vkeeA~~lA~~WK~~i~~~~~ 436 (535)
|++++..+...|...+..+++
T Consensus 105 Vk~k~l~ll~~W~~~f~~~~~ 125 (140)
T PF00790_consen 105 VKEKILELLQEWAEAFKSDPE 125 (140)
T ss_dssp HHHHHHHHHHHHHHHTTTSTT
T ss_pred HHHHHHHHHHHHHHHHCCCCC
Confidence 999999999999999955443
No 382
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=28.97 E-value=5.4e+02 Score=30.22 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=24.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 25 LEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRI 64 (535)
Q Consensus 25 ved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eI 64 (535)
+++....-.+-++=+.+++.+++.++...|..++..+.+.
T Consensus 258 l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 258 IARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3334444444555556777777777777777776665543
No 383
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=28.89 E-value=6.2e+02 Score=26.24 Aligned_cols=96 Identities=13% Similarity=0.164 Sum_probs=0.0
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048095 4 RTNEIRGFNLKLQCKERQLRFLEKRIGESKGELALV---QKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELAL 80 (535)
Q Consensus 4 ~~~~~~~~~~KL~~te~dLerved~i~ElEkqle~L---aek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~ 80 (535)
++.+|+.....++..+.+|+..+......+.-.+.= +.+|+....++......++..+..+......... .++..
T Consensus 105 ~~~~i~~~~~~l~~ak~~l~~a~~~~~r~~~L~~~g~vs~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~--~~~~~ 182 (331)
T PRK03598 105 RDEEIAQARAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQATLKSAQDKLSQYREGNRP--QDIAQ 182 (331)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH--HHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 048095 81 VEKEIEESNSELQSKEIELGL 101 (535)
Q Consensus 81 le~eIee~e~El~~~eeEL~~ 101 (535)
+...+...+..+......++.
T Consensus 183 ~~~~l~~~~~~l~~a~~~l~~ 203 (331)
T PRK03598 183 AKASLAQAQAALAQAELNLQD 203 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
No 384
>PRK15396 murein lipoprotein; Provisional
Probab=28.47 E-value=3.4e+02 Score=23.01 Aligned_cols=36 Identities=6% Similarity=0.192 Sum_probs=14.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 66 GCNGELQSKQGELALVEKEIEESNSELQSKEIELGL 101 (535)
Q Consensus 66 E~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~ 101 (535)
.+..++..+...+..+...+...+.+-.....+|+.
T Consensus 36 ~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 36 TLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444444444443
No 385
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=28.29 E-value=4.5e+02 Score=24.24 Aligned_cols=27 Identities=15% Similarity=0.303 Sum_probs=7.5
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 048095 13 LKLQCKERQLRFLEKRIGESKGELALV 39 (535)
Q Consensus 13 ~KL~~te~dLerved~i~ElEkqle~L 39 (535)
.++..-...+......+.++...+..|
T Consensus 37 ~R~~~Q~~~~~~~~~~l~~i~~~l~~L 63 (141)
T PF13874_consen 37 KRVEAQEEEIAQHRERLKEINDKLEEL 63 (141)
T ss_dssp ---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444
No 386
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=27.83 E-value=7.4e+02 Score=26.13 Aligned_cols=21 Identities=29% Similarity=0.082 Sum_probs=10.1
Q ss_pred HHHHhhhhhhHHHHHHhhhhh
Q 048095 103 QKRVGECNCELECKQQQLGLA 123 (535)
Q Consensus 103 qk~l~E~~~el~~k~~~~~~~ 123 (535)
..++.++.++.+..+..+...
T Consensus 277 ~~~~~~L~re~~~a~~~y~~~ 297 (362)
T TIGR01010 277 TADYQRLVLQNELAQQQLKAA 297 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555444433
No 387
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=27.69 E-value=3.7e+02 Score=22.55 Aligned_cols=36 Identities=6% Similarity=-0.014 Sum_probs=16.7
Q ss_pred CCccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 048095 1 MKTRTNEIRGFNLKLQCKERQLRFLEKRIGESKGELALV 39 (535)
Q Consensus 1 ~~~~~~~~~~~~~KL~~te~dLerved~i~ElEkqle~L 39 (535)
|.+..+-|.+++.++.++=.-. .....|+++++...
T Consensus 1 M~~~~~~~d~~~~~~~~~~~~~---~~~~~e~e~~~r~~ 36 (79)
T PF04380_consen 1 MQDPNKIFDDLAKQISEALPAA---QGPREEIEKNIRAR 36 (79)
T ss_pred CCCchhHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHH
Confidence 4444455556655555443332 33334444444443
No 388
>PRK14127 cell division protein GpsB; Provisional
Probab=27.68 E-value=2.3e+02 Score=25.59 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048095 41 KEIEECNSELWCKEKELGLVQKRIRGC 67 (535)
Q Consensus 41 ek~~Elk~EL~~LE~eLeeLK~eIeE~ 67 (535)
..|..+..++..|..++..++.++.+.
T Consensus 37 ~dye~l~~e~~~Lk~e~~~l~~~l~e~ 63 (109)
T PRK14127 37 KDYEAFQKEIEELQQENARLKAQVDEL 63 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 389
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=27.51 E-value=8e+02 Score=26.41 Aligned_cols=8 Identities=25% Similarity=0.310 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 048095 98 ELGLLQKR 105 (535)
Q Consensus 98 EL~~lqk~ 105 (535)
.|+.+++.
T Consensus 195 KIR~lq~~ 202 (342)
T PF06632_consen 195 KIRELQRL 202 (342)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 390
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=26.96 E-value=1e+03 Score=27.82 Aligned_cols=35 Identities=23% Similarity=0.078 Sum_probs=25.1
Q ss_pred HHHHHHHhhhhhcCCCCChhHHHHHHHHHHHHHHh
Q 048095 396 RTCILLLEQLSNIAPDINPQVRDEAMKMAGEWKKK 430 (535)
Q Consensus 396 ~~CilLLE~L~~~~p~i~~~vkeeA~~lA~~WK~~ 430 (535)
.+-.-|+++|.-..+.-+..+..+|..++.+|-..
T Consensus 503 ~~l~~l~~~L~fp~~kapE~ll~~~~~~~~~l~~l 537 (632)
T PF14817_consen 503 ASLISLLESLGFPLYKAPEALLPEAISKAQDLVFL 537 (632)
T ss_pred chHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 34457778875444667778889999999888744
No 391
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=26.95 E-value=6.9e+02 Score=25.47 Aligned_cols=56 Identities=20% Similarity=0.203 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 048095 17 CKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSK 74 (535)
Q Consensus 17 ~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~ 74 (535)
+|...|+. ..+.++.+|.+-+...+.++.......+++++.++..+.+-...+...
T Consensus 35 ~~q~~l~n--ee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~ 90 (230)
T PF03904_consen 35 KTQMSLEN--EEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDK 90 (230)
T ss_pred HHHHHHhH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 378888888888888888888888888888888888777765555443
No 392
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.83 E-value=1e+03 Score=27.49 Aligned_cols=157 Identities=12% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhh
Q 048095 44 EECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQQQLGLA 123 (535)
Q Consensus 44 ~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~~~~~~~ 123 (535)
.+++..+..+....+.--+++.+++.+++...+.-..+.++++++......+...++.+.+..+..-.=+...|.+|...
T Consensus 584 ~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~E 663 (741)
T KOG4460|consen 584 EEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKE 663 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHH
Q ss_pred hhHHHHHhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHhHHHhhhhhHHHHHH
Q 048095 124 QSEEDLLKNSLKNSIEHWSQKLNLTKEELSLLQKSIRECKGELDSKERQLAVVQKRIGECNNELQLKENELNLVKTVVE 202 (535)
Q Consensus 124 ~~~~~l~~~~~k~~v~~~~~~~~~~~~eL~~~~k~i~e~~~EL~~Kek~le~~~k~~~~~~~~l~~k~k~l~~~~~~~~ 202 (535)
+-...-.-.++...++..-..+.-+.-+.+.+......-.=++. ++|..-++.-++..........|+-.-|.+-++
T Consensus 664 lq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~--~~Q~~~iqsiL~~L~~~i~~~~k~VK~i~~~v~ 740 (741)
T KOG4460|consen 664 LQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILS--AYQRKCIQSILKELGEHIREMVKQVKDIRNHVN 740 (741)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 393
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=26.56 E-value=8.9e+02 Score=27.23 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 048095 36 LALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEES 88 (535)
Q Consensus 36 le~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~ 88 (535)
+..|-.++..|..-+..++.-|...+..+..+.++|..++.+-..+...++..
T Consensus 16 ~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nr 68 (508)
T PF04129_consen 16 FADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNR 68 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33344444444444444444444444444444444444444444444433333
No 394
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.37 E-value=4e+02 Score=28.76 Aligned_cols=21 Identities=33% Similarity=0.352 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHH
Q 048095 154 LLQKSIRECKGELDSKERQLA 174 (535)
Q Consensus 154 ~~~k~i~e~~~EL~~Kek~le 174 (535)
++-|+++.=+.+|..--|++.
T Consensus 321 ~L~~~~r~G~i~l~~yLr~VR 341 (365)
T KOG2391|consen 321 SLGKSLRDGVIDLDQYLRHVR 341 (365)
T ss_pred HHHHHHhcCeeeHHHHHHHHH
Confidence 444444444444444444433
No 395
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=26.28 E-value=1.3e+03 Score=28.57 Aligned_cols=109 Identities=15% Similarity=0.049 Sum_probs=53.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHH
Q 048095 12 NLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLV-------QKRIRGCNGELQSKQGELALVEKE 84 (535)
Q Consensus 12 ~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeL-------K~eIeE~e~eIe~~qkeIe~le~e 84 (535)
+.++++-+..|+..++.+.++...+-....-+..+..+...++..|..- +.++.+.+..+.....-+...+..
T Consensus 447 ~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~s 526 (1041)
T KOG0243|consen 447 AEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKS 526 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555533333334444444444444333 444444433333333223333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 048095 85 IEESNSELQSKEIELGLLQKRVGECNCELECKQQQL 120 (535)
Q Consensus 85 Iee~e~El~~~eeEL~~lqk~l~E~~~el~~k~~~~ 120 (535)
-..+...-......++..+..+..+...|-.+.+.-
T Consensus 527 e~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~~~ 562 (1041)
T KOG0243|consen 527 EEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDRLD 562 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 333333344455666677777777777776666544
No 396
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=25.99 E-value=3.3e+02 Score=29.18 Aligned_cols=63 Identities=22% Similarity=0.280 Sum_probs=39.7
Q ss_pred hhhHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 048095 12 NLKLQCKERQL----RFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSK 74 (535)
Q Consensus 12 ~~KL~~te~dL----erved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~ 74 (535)
|.+||-.+++| +-+.|.+.|.+.++..-..+|++..+++.++.--+..|.-.+.+++..|...
T Consensus 135 naQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QR 201 (405)
T KOG2010|consen 135 NAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQR 201 (405)
T ss_pred HHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555544 3467777777777777677777777766666666666666666666555443
No 397
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=25.87 E-value=4e+02 Score=22.35 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 81 VEKEIEESNSELQSKEIELGLLQKR 105 (535)
Q Consensus 81 le~eIee~e~El~~~eeEL~~lqk~ 105 (535)
+..++..++.++......+..+++.
T Consensus 62 y~~KL~~ikkrm~~l~~~l~~lk~R 86 (92)
T PF14712_consen 62 YVKKLVNIKKRMSNLHERLQKLKKR 86 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 398
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=25.80 E-value=4.9e+02 Score=23.32 Aligned_cols=50 Identities=10% Similarity=0.214 Sum_probs=36.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 257 EKKLRQIQSSIEECEKELAIKERHISDYEEKLKAKEKLYDEIKKSIKELE 306 (535)
Q Consensus 257 ek~~~~~~~~~e~~~kel~~ke~~i~~~e~el~~~~k~~~~~~k~~ke~e 306 (535)
..++......+..+.+++.-..-+++...+-|+++.+.+..+++++..++
T Consensus 52 geqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~~E 101 (102)
T PF01519_consen 52 GEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDKME 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34566666666667777777777777778888888888888888876654
No 399
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=25.79 E-value=7.8e+02 Score=25.71 Aligned_cols=59 Identities=17% Similarity=0.176 Sum_probs=35.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHhHHHhhhhhHH
Q 048095 140 HWSQKLNLTKEELSLLQKSIRECKGELDSKERQLAVVQKRIGECNNELQLKENELNLVK 198 (535)
Q Consensus 140 ~~~~~~~~~~~eL~~~~k~i~e~~~EL~~Kek~le~~~k~~~~~~~~l~~k~k~l~~~~ 198 (535)
++.-+|+.+...-+.++++.++.-+=+..--.+++.++--|--.-.+|+..+++..-++
T Consensus 240 ~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~ 298 (330)
T KOG2991|consen 240 ELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLK 298 (330)
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555666555555555556777777777766667766666654433
No 400
>PLN02372 violaxanthin de-epoxidase
Probab=25.74 E-value=9.5e+02 Score=26.71 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=11.0
Q ss_pred HHhhhhhhHHHHHHhhhhh
Q 048095 105 RVGECNCELECKQQQLGLA 123 (535)
Q Consensus 105 ~l~E~~~el~~k~~~~~~~ 123 (535)
.+..+.+++...++.||..
T Consensus 433 ~l~~~~~~~~~vek~f~~~ 451 (455)
T PLN02372 433 LLEKLKMEASEVEKLFGRA 451 (455)
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 3455566666666666543
No 401
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=25.65 E-value=4.7e+02 Score=23.63 Aligned_cols=25 Identities=28% Similarity=0.707 Sum_probs=22.5
Q ss_pred CCCChhHHHHHHHHHHHHHHhcccc
Q 048095 410 PDINPQVRDEAMKMAGEWKKKMGVI 434 (535)
Q Consensus 410 p~i~~~vkeeA~~lA~~WK~~i~~~ 434 (535)
|..++.|+.++..+...|...+..+
T Consensus 93 ~~~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 93 PKYDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3789999999999999999999765
No 402
>PRK04051 rps4p 30S ribosomal protein S4P; Validated
Probab=25.51 E-value=2.3e+02 Score=27.70 Aligned_cols=80 Identities=16% Similarity=0.014 Sum_probs=58.2
Q ss_pred ChhHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhcCCCCC-ChHHHHHHHHHhhhhhhhHHHHHhcCCcccccch
Q 048095 413 NPQVRDEAMKMAGEWKKKMGVIGENSLEVLGFLHLLAAYRLAPAF-DGNELESLLDIVAHYRQTAKLRQSLGFADKVTVV 491 (535)
Q Consensus 413 ~~~vkeeA~~lA~~WK~~i~~~~~~~lea~gFL~lla~fgi~s~F-d~del~~Lv~~va~~~~~~~L~~sLGL~~K~~di 491 (535)
-..+|..|..|.. ..+..-....-.||.-|.-|||.++= +-|++.+|-+.....+..+.+...+||+.-++..
T Consensus 48 ~~~iR~~Ar~Ll~------~~~~~r~~~~~~Ll~kL~~~Gil~~~~~L~~vl~L~v~~~lerRLd~il~r~gla~S~~~A 121 (177)
T PRK04051 48 LRKYRRQARSLLA------LPPEERAKEEEQLLGKLKRYGILKENATLDDVLSLTVEDILERRLQTIVYRKGLARTPKQA 121 (177)
T ss_pred HHHHHHHHHHHhc------CCchHHHHHHHHHHHHHHHcCCCCCCCCHHHHHhccHHHHHHhHHHHHHHHccCcCCHHHH
Confidence 4456666666664 11111234567899999999999874 7788888888887888899999999999887765
Q ss_pred HHHhhhcC
Q 048095 492 PWSSIGMD 499 (535)
Q Consensus 492 V~~LI~~g 499 (535)
. .||..|
T Consensus 122 r-~lI~hG 128 (177)
T PRK04051 122 R-QFIVHG 128 (177)
T ss_pred H-HHHHcC
Confidence 4 356666
No 403
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=25.49 E-value=3.9e+02 Score=22.07 Aligned_cols=30 Identities=10% Similarity=0.121 Sum_probs=15.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 048095 10 GFNLKLQCKERQLRFLEKRIGESKGELALV 39 (535)
Q Consensus 10 ~~~~KL~~te~dLerved~i~ElEkqle~L 39 (535)
.|-...+....+|..+...+.++.......
T Consensus 4 ~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~ 33 (103)
T PF00804_consen 4 EFFDEVQEIREDIDKIKEKLNELRKLHKKI 33 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555555544444
No 404
>PRK14011 prefoldin subunit alpha; Provisional
Probab=25.42 E-value=5.7e+02 Score=24.02 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Q 048095 15 LQCKERQLRFLEKRIGESKGELALV 39 (535)
Q Consensus 15 L~~te~dLerved~i~ElEkqle~L 39 (535)
|+.--..|+.....+.-+..++..|
T Consensus 5 lq~~~~~l~~~~~qie~L~~si~~L 29 (144)
T PRK14011 5 LQNQFMALEVYNQQVQKLQEELSSI 29 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444
No 405
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=25.34 E-value=5.2e+02 Score=23.49 Aligned_cols=84 Identities=15% Similarity=0.132 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 18 KERQLRFLEKRIGESKGELALV-QKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKE 96 (535)
Q Consensus 18 te~dLerved~i~ElEkqle~L-aek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~e 96 (535)
...-|.++...|.++.+++..+ ...|..+-.+.... ..+..-+..++..++.++..+..+..+|-+-...+....
T Consensus 31 ~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~----~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~ 106 (132)
T PF10392_consen 31 ISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSI----EELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLT 106 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3456778888888888888887 44455544433322 233334455555555555555555555555555555555
Q ss_pred HHHHHHHHH
Q 048095 97 IELGLLQKR 105 (535)
Q Consensus 97 eEL~~lqk~ 105 (535)
..|.++...
T Consensus 107 ~~L~rl~~t 115 (132)
T PF10392_consen 107 SQLERLHQT 115 (132)
T ss_pred HHHHHHHHH
Confidence 555555544
No 406
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=25.27 E-value=8.3e+02 Score=25.86 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=25.7
Q ss_pred hhhhhhHHHHHHHHHH-----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 9 RGFNLKLQCKERQLRF-----LEKRIGESKGELALVQKEIEECNSELWCKEKELG 58 (535)
Q Consensus 9 ~~~~~KL~~te~dLer-----ved~i~ElEkqle~Laek~~Elk~EL~~LE~eLe 58 (535)
.+|+.-|+.....|.. +.+.+...+..+......+.++..++..+...+.
T Consensus 51 ~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~ 105 (301)
T PF06120_consen 51 IEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIK 105 (301)
T ss_pred HHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666665555543 4444445555555545555555555555554443
No 407
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=25.10 E-value=9.8e+02 Score=28.55 Aligned_cols=8 Identities=38% Similarity=0.679 Sum_probs=3.3
Q ss_pred HHHHhcCC
Q 048095 477 KLRQSLGF 484 (535)
Q Consensus 477 ~L~~sLGL 484 (535)
.-..++||
T Consensus 768 rWV~~igL 775 (916)
T KOG0249|consen 768 RWVQSIGL 775 (916)
T ss_pred HHHHhcCH
Confidence 33344444
No 408
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=24.73 E-value=1.1e+03 Score=26.98 Aligned_cols=97 Identities=13% Similarity=0.161 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhHHHHHhhhhhhhHHHHHHhhhhhHHHHHHHHHHH
Q 048095 80 LVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQQQLGLAQSEEDLLKNSLKNSIEHWSQKLNLTKEELSLLQKSI 159 (535)
Q Consensus 80 ~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~~~~~~~~~~~~l~~~~~k~~v~~~~~~~~~~~~eL~~~~k~i 159 (535)
-+..+|.++-..+.........+...+..+.+.|..-+++......+.+.....+...=++..--..+=+.+|..+..++
T Consensus 417 ~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHL 496 (518)
T PF10212_consen 417 YYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHL 496 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44555666666666666666666666666666665555444333333333322232222233222233445666666666
Q ss_pred HHHHhhhhHHHHHHHHH
Q 048095 160 RECKGELDSKERQLAVV 176 (535)
Q Consensus 160 ~e~~~EL~~Kek~le~~ 176 (535)
......|-....+++.+
T Consensus 497 asmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 497 ASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666555555544
No 409
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=24.65 E-value=1.1e+03 Score=26.84 Aligned_cols=148 Identities=20% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 23 RFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLL 102 (535)
Q Consensus 23 erved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~l 102 (535)
...++.+.+.+.+-+.+..+...-..+.. .....+.+.++...+.+++ .++...+.++...+..+...+..|+..
T Consensus 21 ~~a~~~l~~Ae~eAe~i~keA~~eAke~~--ke~~~EaeeE~~~~R~Ele---~el~~~e~rL~qrE~rL~qRee~Lekr 95 (514)
T TIGR03319 21 RIAEKKLGSAEELAKRIIEEAKKEAETLK--KEALLEAKEEVHKLRAELE---RELKERRNELQRLERRLLQREETLDRK 95 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhhHHHHHHhhhhhhhHHHHHhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 048095 103 QKRVGECNCELECKQQQLGLAQSEEDLLKNSLKNSIEHWSQKLNLTKEELSLLQKSIRECKGELDSKERQLAVVQKRIGE 182 (535)
Q Consensus 103 qk~l~E~~~el~~k~~~~~~~~~~~~l~~~~~k~~v~~~~~~~~~~~~eL~~~~k~i~e~~~EL~~Kek~le~~~k~~~~ 182 (535)
...+..-..+|..++..+.....+.. ...+++.....+....=..+...+.+ +.|+.=++.+......
T Consensus 96 ~e~Lekre~~Le~ke~~L~~re~eLe-----------e~~~e~~~~~~~~~~~le~~a~lt~~-eak~~l~~~~~~~~~~ 163 (514)
T TIGR03319 96 MESLDKKEENLEKKEKELSNKEKNLD-----------EKEEELEELIAEQREELERISGLTQE-EAKEILLEEVEEEARH 163 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHHH
Q ss_pred hhHHH
Q 048095 183 CNNEL 187 (535)
Q Consensus 183 ~~~~l 187 (535)
....+
T Consensus 164 ~~~~~ 168 (514)
T TIGR03319 164 EAAKL 168 (514)
T ss_pred HHHHH
No 410
>PRK10698 phage shock protein PspA; Provisional
Probab=24.12 E-value=7.3e+02 Score=24.79 Aligned_cols=36 Identities=11% Similarity=0.082 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 20 RQLRFLEKRIGESKGELALVQKEIEECNSELWCKEK 55 (535)
Q Consensus 20 ~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~ 55 (535)
..|..+...+..+-.....+..+|.++...+...+.
T Consensus 38 ~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~ 73 (222)
T PRK10698 38 DTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQE 73 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444444444444443
No 411
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.89 E-value=6.3e+02 Score=27.32 Aligned_cols=9 Identities=11% Similarity=0.324 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 048095 74 KQGELALVE 82 (535)
Q Consensus 74 ~qkeIe~le 82 (535)
++++++.+.
T Consensus 265 L~~niDIL~ 273 (365)
T KOG2391|consen 265 LQKNIDILK 273 (365)
T ss_pred HHhhhHHHH
Confidence 333333333
No 412
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=23.75 E-value=3.8e+02 Score=22.65 Aligned_cols=21 Identities=10% Similarity=0.251 Sum_probs=9.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 048095 23 RFLEKRIGESKGELALVQKEI 43 (535)
Q Consensus 23 erved~i~ElEkqle~Laek~ 43 (535)
.-+.+.|..+..+..+|+.++
T Consensus 7 l~Ir~dIk~vd~KVdaLq~~V 27 (75)
T PF05531_consen 7 LVIRQDIKAVDDKVDALQTQV 27 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 413
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=23.56 E-value=5.4e+02 Score=23.72 Aligned_cols=44 Identities=23% Similarity=0.222 Sum_probs=18.6
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 048095 7 EIRGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSEL 50 (535)
Q Consensus 7 ~~~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL 50 (535)
.+.-++.+|+.+..++..+.....+....+..+..+..++.-.+
T Consensus 45 ~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~ 88 (141)
T PF13874_consen 45 EIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRL 88 (141)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444554444444444444444444444444433333333
No 414
>KOG1793 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.44 E-value=2.1e+02 Score=31.43 Aligned_cols=79 Identities=19% Similarity=0.313 Sum_probs=59.6
Q ss_pred HHhhhCChHHHHHHHHHhhcchhhhHHhHHHHhhhCCCchhHHHHHhcccCCCCCCCCCCcchhhHhHHHHHHHHhhhh-
Q 048095 328 SLQSMNNGRSLQLILNQHLQKHDLIFGQISQTLTKACDPALLVLDAMQGFYPPHSRKGDMEFDVSIIKRTCILLLEQLS- 406 (535)
Q Consensus 328 ~lC~~MD~~gL~~fv~~~~k~~~~lr~Ev~~AL~~A~DPAkLVLdai~~f~~~~~~~~~~~~~~~~~r~~CilLLE~L~- 406 (535)
.+...|-..+|..-+.+|. ||++|.+++-|-+ |+..+...+|.+-..+|--|+
T Consensus 194 ~v~~vL~k~~L~et~LDng-----------------------vL~~lk~WLePLP---D~SLPal~Ir~~ll~iL~dlpi 247 (417)
T KOG1793|consen 194 LVVAVLSKKALQETFLDNG-----------------------VLDSLKEWLEPLP---DGSLPALNIRKSLLDILNDLPI 247 (417)
T ss_pred HHHHHHhhhhHHHHHHhhh-----------------------HHHHHHHHhccCC---CCCCcchHHHHHHHHHHhcCCc
Confidence 3556666777777777764 8999999886643 445567778888888875543
Q ss_pred ------------------hcCCCCChhHHHHHHHHHHHHHHhcc
Q 048095 407 ------------------NIAPDINPQVRDEAMKMAGEWKKKMG 432 (535)
Q Consensus 407 ------------------~~~p~i~~~vkeeA~~lA~~WK~~i~ 432 (535)
..+|..++..+.-|.+|-.+|-.-|-
T Consensus 248 ~~~E~Lk~SGlGkvVmflsks~ket~~nkrlA~kLI~eWsRpI~ 291 (417)
T KOG1793|consen 248 DKREHLKESGLGKVVMFLSKSPKETKENKRLANKLINEWSRPIF 291 (417)
T ss_pred chHHHHHhcCCCeEEEEEecCCccchHHHHHHHHHHHHhhcccc
Confidence 14899999999999999999987764
No 415
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=23.33 E-value=9.2e+02 Score=26.41 Aligned_cols=16 Identities=31% Similarity=0.329 Sum_probs=8.9
Q ss_pred HHHHHhhhhhhHHHHH
Q 048095 102 LQKRVGECNCELECKQ 117 (535)
Q Consensus 102 lqk~l~E~~~el~~k~ 117 (535)
.+..++++.++++..+
T Consensus 371 ~~~~l~~L~Re~~~~r 386 (458)
T COG3206 371 LQVQLRELEREAEAAR 386 (458)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3445556666665555
No 416
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=23.33 E-value=5.9e+02 Score=23.39 Aligned_cols=8 Identities=13% Similarity=0.061 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 048095 45 ECNSELWC 52 (535)
Q Consensus 45 Elk~EL~~ 52 (535)
.+..++.+
T Consensus 31 ~le~qL~E 38 (119)
T COG1382 31 QLEAQLKE 38 (119)
T ss_pred HHHHHHHH
Confidence 33333333
No 417
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=23.21 E-value=1e+03 Score=26.18 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 048095 15 LQCKERQLRFLEKRIGESKGELALVQ 40 (535)
Q Consensus 15 L~~te~dLerved~i~ElEkqle~La 40 (535)
|+....+|..+......++..++.|.
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk 239 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLK 239 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 418
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=23.14 E-value=9.4e+02 Score=25.71 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=11.3
Q ss_pred hhHhHHHHHHHHhhhh
Q 048095 391 VSIIKRTCILLLEQLS 406 (535)
Q Consensus 391 ~~~~r~~CilLLE~L~ 406 (535)
..+.+.-|..|||.+-
T Consensus 274 ~sdLksl~~aLle~in 289 (319)
T PF09789_consen 274 ISDLKSLATALLETIN 289 (319)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3457777888888773
No 419
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=22.84 E-value=83 Score=23.89 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=18.3
Q ss_pred CCChhHHHHHHHHHHHHHHhc
Q 048095 411 DINPQVRDEAMKMAGEWKKKM 431 (535)
Q Consensus 411 ~i~~~vkeeA~~lA~~WK~~i 431 (535)
..+|.++..|+.|-..||..+
T Consensus 32 ~~~~~i~~~A~~Li~~Wk~~v 52 (53)
T PF08711_consen 32 SENPEIRKLAKELIKKWKRIV 52 (53)
T ss_dssp TS-HHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhHhc
Confidence 579999999999999999876
No 420
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=22.79 E-value=8.3e+02 Score=24.99 Aligned_cols=47 Identities=13% Similarity=0.095 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 048095 67 CNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCEL 113 (535)
Q Consensus 67 ~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el 113 (535)
+..+-.+......+++.++......+..+..+++.++.+=..++.++
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777777777777777777544444443
No 421
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=22.58 E-value=4.6e+02 Score=21.91 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 31 ESKGELALVQKEIEECNSELWCKEKEL 57 (535)
Q Consensus 31 ElEkqle~Laek~~Elk~EL~~LE~eL 57 (535)
|.+.+++.|...-..++-.+--++..+
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l 30 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERL 30 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 422
>TIGR01018 rpsD_arch ribosomal protein S4(archaeal type)/S9(eukaryote cytosolic type). This model finds eukaryotic ribosomal protein S9 as well as archaeal ribosomal protein S4.
Probab=22.40 E-value=2.7e+02 Score=26.84 Aligned_cols=60 Identities=13% Similarity=-0.036 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCCC--CCChHHHHHHHHHhhhhhhhHHHHHhcCCcccccchHHHhhhcCc
Q 048095 440 EVLGFLHLLAAYRLAP--AFDGNELESLLDIVAHYRQTAKLRQSLGFADKVTVVPWSSIGMDQ 500 (535)
Q Consensus 440 ea~gFL~lla~fgi~s--~Fd~del~~Lv~~va~~~~~~~L~~sLGL~~K~~diV~~LI~~gq 500 (535)
..-+||--|.-|||.+ .-.-|++.+|=+..-..+..+-+.-.+||+..++..-+ ||..|+
T Consensus 69 ~~~~LL~kL~~~Gll~e~~~~Ld~vl~Ltv~~~leRRL~~vv~r~g~a~s~~~Arq-lI~hgH 130 (162)
T TIGR01018 69 EGNQLLRRLVRLGILDEENAKLDDVLGLTVEDFLERRLQTQVFKKGLARTIHQARQ-LIVHGH 130 (162)
T ss_pred HHHHHHHHHHHcCCCccccCCHHHHHhccHHHHHHHhHhhHhhhccCcCCHHHHHH-HhhCCC
Confidence 5578999999999998 35888999887777777777777778899988777654 455553
No 423
>COG5283 Phage-related tail protein [Function unknown]
Probab=22.40 E-value=1.6e+03 Score=28.25 Aligned_cols=115 Identities=14% Similarity=0.202 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 048095 9 RGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEES 88 (535)
Q Consensus 9 ~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~ 88 (535)
++.-..++.-..=+++......|+..........|.++..++...+..+..+..+.......+...++++..+...|...
T Consensus 60 ~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t 139 (1213)
T COG5283 60 EGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTL 139 (1213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhh
Q 048095 89 NSELQSKEIELGLLQKRVGECNCELECKQQQLGLA 123 (535)
Q Consensus 89 e~El~~~eeEL~~lqk~l~E~~~el~~k~~~~~~~ 123 (535)
..-+..-..-+....+.+.+...++-....-|+.+
T Consensus 140 ~k~maaQ~~l~eqt~n~~g~a~~~~~gl~esf~~q 174 (1213)
T COG5283 140 NKSMAAQARLLEQTGNKFGTADAKVVGLRESFGRQ 174 (1213)
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHhhhhHhHHHHHH
No 424
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=22.39 E-value=5.2e+02 Score=22.44 Aligned_cols=49 Identities=10% Similarity=-0.010 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 18 KERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRG 66 (535)
Q Consensus 18 te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE 66 (535)
.+.+|+-......=+++--.....+|..+..-...+...++.++..-.+
T Consensus 12 v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~ 60 (99)
T PF10046_consen 12 VESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEE 60 (99)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555667777776666666666665544433
No 425
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=22.17 E-value=3.7e+02 Score=30.29 Aligned_cols=46 Identities=9% Similarity=0.051 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 048095 43 IEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEES 88 (535)
Q Consensus 43 ~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~ 88 (535)
+.+.+....+++++|..++.+.+.+.......+..|+.++.++..+
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~L 116 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAAL 116 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 3344444444455555554444444444444444444333333333
No 426
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=22.16 E-value=5.2e+02 Score=22.41 Aligned_cols=43 Identities=9% Similarity=0.042 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 13 LKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEK 55 (535)
Q Consensus 13 ~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~ 55 (535)
-.|..|-.++.-++..=......+..+......+...+..+..
T Consensus 14 ~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~ 56 (99)
T PF10046_consen 14 SELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQ 56 (99)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544444444444444443333333333333333
No 427
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=22.03 E-value=7.9e+02 Score=28.19 Aligned_cols=11 Identities=9% Similarity=0.329 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 048095 170 ERQLAVVQKRI 180 (535)
Q Consensus 170 ek~le~~~k~~ 180 (535)
+.+++.+.+.+
T Consensus 261 ~~D~~~L~~~~ 271 (555)
T TIGR03545 261 QNDLKRLENKY 271 (555)
T ss_pred HhHHHHHHHHh
Confidence 33444444333
No 428
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=21.97 E-value=4.2e+02 Score=21.20 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=5.9
Q ss_pred HHHHHHHHhHHHHHHH
Q 048095 23 RFLEKRIGESKGELAL 38 (535)
Q Consensus 23 erved~i~ElEkqle~ 38 (535)
.|+...+..+++++..
T Consensus 7 ~rL~Kel~kl~~~i~~ 22 (66)
T PF10458_consen 7 ERLEKELEKLEKEIER 22 (66)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 429
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=21.89 E-value=1e+03 Score=25.76 Aligned_cols=35 Identities=23% Similarity=0.063 Sum_probs=16.9
Q ss_pred HHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q 048095 22 LRFLEKRIGESKGELALV-----QKEIEECNSELWCKEKE 56 (535)
Q Consensus 22 Lerved~i~ElEkqle~L-----aek~~Elk~EL~~LE~e 56 (535)
|+.+.+...+++..+..- ..+|..+..++..|+.-
T Consensus 9 l~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~i 48 (363)
T COG0216 9 LESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPI 48 (363)
T ss_pred HHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHH
Confidence 334444444444444332 45566666665555443
No 430
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=21.85 E-value=65 Score=28.73 Aligned_cols=37 Identities=19% Similarity=0.146 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048095 31 ESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGC 67 (535)
Q Consensus 31 ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~ 67 (535)
+|..-++.+...|..+..++..+..++..+...+...
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~ 58 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQLEEL 58 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3444444444444444444444333333333333333
No 431
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=21.81 E-value=8e+02 Score=24.41 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 048095 46 CNSELWCKEKELGLVQKRIR 65 (535)
Q Consensus 46 lk~EL~~LE~eLeeLK~eIe 65 (535)
++.++..|+..|..+.....
T Consensus 101 LkrELa~Le~~l~~~~~~~~ 120 (195)
T PF12761_consen 101 LKRELAELEEKLSKVEQAAE 120 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544444333
No 432
>PF15456 Uds1: Up-regulated During Septation
Probab=21.78 E-value=6.3e+02 Score=23.17 Aligned_cols=26 Identities=23% Similarity=0.068 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHH
Q 048095 92 LQSKEIELGLLQKRVGECNCELECKQ 117 (535)
Q Consensus 92 l~~~eeEL~~lqk~l~E~~~el~~k~ 117 (535)
....+.++......+.++..+|...+
T Consensus 76 ~~~~eeel~~~~rk~ee~~~eL~~le 101 (124)
T PF15456_consen 76 SLKAEEELAESDRKCEELAQELWKLE 101 (124)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44556666666666666666665444
No 433
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=21.42 E-value=5.7e+02 Score=22.53 Aligned_cols=41 Identities=24% Similarity=0.279 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048095 69 GELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGEC 109 (535)
Q Consensus 69 ~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~ 109 (535)
.-+.........+......-.........+|..+...+..+
T Consensus 53 ~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l 93 (126)
T PF13863_consen 53 KFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEEL 93 (126)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333444444444444443333
No 434
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=21.41 E-value=3.7e+02 Score=27.11 Aligned_cols=57 Identities=11% Similarity=0.088 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 048095 31 ESKGELALVQKEIEECNSELWCKEKELGLV--QKRIRGCNGELQSKQGELALVEKEIEE 87 (535)
Q Consensus 31 ElEkqle~Laek~~Elk~EL~~LE~eLeeL--K~eIeE~e~eIe~~qkeIe~le~eIee 87 (535)
++..++-.+..++..++.+..++..-+..- -..+.+++.+|...+.+|+.++.++..
T Consensus 129 DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~ 187 (262)
T PF14257_consen 129 DVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKY 187 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443322 223334444444444444444433333
No 435
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=21.37 E-value=9.3e+02 Score=24.98 Aligned_cols=71 Identities=11% Similarity=0.137 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 34 GELALVQKEIEECNSELWCKEKELG-LVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQK 104 (535)
Q Consensus 34 kqle~Laek~~Elk~EL~~LE~eLe-eLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk 104 (535)
.....+-.+|+-+.+-+..++-.-. .+..-..+++.--+.....+..++.+.+.....+.....++..+..
T Consensus 38 ~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~T 109 (258)
T PF15397_consen 38 LKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLST 109 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666554331 1222222222223334455666666666666666666666666554
No 436
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=21.27 E-value=1.3e+03 Score=26.63 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=13.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 28 RIGESKGELALVQKEIEECNSELWCKEKEL 57 (535)
Q Consensus 28 ~i~ElEkqle~Laek~~Elk~EL~~LE~eL 57 (535)
...++.+++..+.+++.++.+++++++..+
T Consensus 94 ~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~ 123 (646)
T PRK05771 94 ELEKIEKEIKELEEEISELENEIKELEQEI 123 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444
No 437
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=21.21 E-value=1.1e+03 Score=25.64 Aligned_cols=146 Identities=18% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 17 CKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKE 96 (535)
Q Consensus 17 ~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~e 96 (535)
++..-|..--..|.|-.+=+..+.+.+++.+.+-..|..+=+.++.++-...+-+......+.-++.-+..++.+-...+
T Consensus 68 aa~~llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lq 147 (401)
T PF06785_consen 68 AAGQLLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQ 147 (401)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhhhhHHHHHhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhHHHHHH
Q 048095 97 IELGLLQKRVGECNCELECKQQQLGLAQSEEDLLKNSLKNSIEHWSQKLNLTKEELSLLQKSIRECKGELDSKERQL 173 (535)
Q Consensus 97 eEL~~lqk~l~E~~~el~~k~~~~~~~~~~~~l~~~~~k~~v~~~~~~~~~~~~eL~~~~k~i~e~~~EL~~Kek~l 173 (535)
-+|+.+++.++|-..|-.....++.....--. ..-.++...=-+=.++-..=..--..|++|=.+|
T Consensus 148 lqL~~l~~e~~Ekeeesq~LnrELaE~layqq-----------~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDL 213 (401)
T PF06785_consen 148 LQLDALQQECGEKEEESQTLNRELAEALAYQQ-----------ELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDL 213 (401)
T ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH-----------HHHHHhhcccccchhhhHHHHHHHHHHHHHHHHH
No 438
>PRK00846 hypothetical protein; Provisional
Probab=21.11 E-value=5.1e+02 Score=21.93 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 048095 9 RGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCN 68 (535)
Q Consensus 9 ~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e 68 (535)
+.+.++=+..++.|..++-.++-.+.-++.|..-+......+..+...+..+..++.+..
T Consensus 2 ~~~~~~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 2 EQLSLRDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred chhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 439
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=21.06 E-value=4.5e+02 Score=21.25 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 31 ESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSE 91 (535)
Q Consensus 31 ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~E 91 (535)
|+.+.++.-..-...+..++.......-...+.+.+-......+..+|..+..++++.+++
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 440
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=21.04 E-value=6.3e+02 Score=22.94 Aligned_cols=59 Identities=14% Similarity=0.221 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 048095 10 GFNLKLQCKERQLRFLEKRIGESKGELALV----QKEIEECNSELWCKEKELGLVQKRIRGCN 68 (535)
Q Consensus 10 ~~~~KL~~te~dLerved~i~ElEkqle~L----aek~~Elk~EL~~LE~eLeeLK~eIeE~e 68 (535)
+...++.....++..+++.+.+-+..-..- -.+++|+...+..+|..+..++..+.+++
T Consensus 5 ~~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemK 67 (112)
T PF07439_consen 5 GLHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSEMK 67 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhcc
No 441
>PRK10869 recombination and repair protein; Provisional
Probab=20.77 E-value=1.3e+03 Score=26.34 Aligned_cols=205 Identities=14% Similarity=0.070 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHhHHHHHHHHHHH
Q 048095 8 IRGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLV---------QKRIRGCNGELQSKQGEL 78 (535)
Q Consensus 8 ~~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeL---------K~eIeE~e~eIe~~qkeI 78 (535)
|..|+.. ..........=.....+.++++.+.....+...++.-++-+++++ ..++.+....++..++-.
T Consensus 146 LD~~~~~-~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~n~e~i~ 224 (553)
T PRK10869 146 LDAYANE-TSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLANSGQLL 224 (553)
T ss_pred HHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhHHHHHhhhhhhhHHHHHHhhhh
Q 048095 79 ALVEKEIEESNS-----------ELQSKEIELGLLQKRVGECNCELECKQQQLGLAQSEEDLLKNSLKNSIEHWSQKLNL 147 (535)
Q Consensus 79 e~le~eIee~e~-----------El~~~eeEL~~lqk~l~E~~~el~~k~~~~~~~~~~~~l~~~~~k~~v~~~~~~~~~ 147 (535)
+.+..-...+.. .....-..+......+.++...|++..-.+.....+..-.-+.+..--++ .+++..
T Consensus 225 ~~~~~~~~~L~~~~~~~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~-l~~ie~ 303 (553)
T PRK10869 225 TTSQNALQLLADGEEVNILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNR-LAELEQ 303 (553)
T ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHH-HHHHHH
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHhHHHhhhhhHHHHHHHHHHHhhhHHHH
Q 048095 148 TKEELSLLQKSIRECKGELDSKERQLAVVQKRIGECNNELQLKENELNLVKTVVEHCLQKLNLKKEE 214 (535)
Q Consensus 148 ~~~eL~~~~k~i~e~~~EL~~Kek~le~~~k~~~~~~~~l~~k~k~l~~~~~~~~~~~kele~k~~~ 214 (535)
.--.|..+.++-.--..++-....++..--..+....+.++..++++....+.+..+...|..++.+
T Consensus 304 Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 304 RLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 442
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=20.55 E-value=5e+02 Score=23.05 Aligned_cols=92 Identities=16% Similarity=0.177 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHH---------------------------
Q 048095 8 IRGFNLKLQCKERQLRFLEKRIGESKGELALV---QKEIEECNSELWCKEKEL--------------------------- 57 (535)
Q Consensus 8 ~~~~~~KL~~te~dLerved~i~ElEkqle~L---aek~~Elk~EL~~LE~eL--------------------------- 57 (535)
|+.....+++-+++++.+...+..+...+.++ .+-+..+... ...+.-+
T Consensus 1 ~qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~-~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~ 79 (126)
T TIGR00293 1 LQQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGA-EGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYY 79 (126)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEE
Q ss_pred --HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 58 --GLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELG 100 (535)
Q Consensus 58 --eeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~ 100 (535)
..+...+.-++..+..+.+.+..+...+......+......++
T Consensus 80 vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 80 VEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 443
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.45 E-value=4.4e+02 Score=22.19 Aligned_cols=56 Identities=18% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 51 WCKEKELGLVQKRIRGCNGELQS---KQGELALVEKEIEESNSELQSKEIELGLLQKRV 106 (535)
Q Consensus 51 ~~LE~eLeeLK~eIeE~e~eIe~---~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l 106 (535)
..+......++-++...+.-+.. +.+.++.-+.+|+.++.++..+..-|..++..+
T Consensus 24 kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 444
>PRK06771 hypothetical protein; Provisional
Probab=20.40 E-value=1e+02 Score=27.11 Aligned_cols=41 Identities=10% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHhcCCccc---ccchHHHhhhcC-chhhhhhhhhcCchhHHhH
Q 048095 478 LRQSLGFADK---VTVVPWSSIGMD-QAENSRMNHGIGPAVFREQ 518 (535)
Q Consensus 478 L~~sLGL~~K---~~diV~~LI~~g-qieAv~~~~~f~p~~ll~~ 518 (535)
++.-+|+.+- +++=+-.|+..| .++||+..+.-.-.+|.++
T Consensus 42 I~~~~Gi~~~~~~~~~e~~~Li~~Gkki~AIK~~Re~tG~~L~eA 86 (93)
T PRK06771 42 ITKEMGIVDREPPVNKELRQLMEEGQTVTAVKRVREAFGFSLLEA 86 (93)
T ss_pred HHHHcCCCCCcccccHHHHHHHHcCCchHHHHHHHHHcCCCHHHH
No 445
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=20.12 E-value=6.7e+02 Score=24.21 Aligned_cols=72 Identities=17% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 048095 16 QCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKEL----GLVQKRIRGCNGELQSKQGELALVEKEIEE 87 (535)
Q Consensus 16 ~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eL----eeLK~eIeE~e~eIe~~qkeIe~le~eIee 87 (535)
+....-|+.+.+.+.........+...+...+..+..-...+ ..+..-+....+.|..++++|..+...|+.
T Consensus 106 ~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~~ 181 (184)
T PF05791_consen 106 EDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIKK 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHh
No 446
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=20.09 E-value=3.9e+02 Score=27.56 Aligned_cols=72 Identities=8% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHh
Q 048095 38 LVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEK----------EIEESNSELQSKEIELGLLQKRVG 107 (535)
Q Consensus 38 ~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~----------eIee~e~El~~~eeEL~~lqk~l~ 107 (535)
...++|..+..++..+..++..+..+|.+.+.++..+...-..... ........+..-+.+|+.+...+.
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~ 256 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKR 256 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Q ss_pred hh
Q 048095 108 EC 109 (535)
Q Consensus 108 E~ 109 (535)
++
T Consensus 257 ~L 258 (259)
T PF08657_consen 257 EL 258 (259)
T ss_pred hc
No 447
>PRK14127 cell division protein GpsB; Provisional
Probab=20.08 E-value=4.1e+02 Score=23.95 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 23 RFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRI 64 (535)
Q Consensus 23 erved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eI 64 (535)
+.|.+=+.+|-..++.+..+..+++.++..++..+.+++.++
T Consensus 26 ~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 26 DEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Done!