Query 048095
Match_columns 535
No_of_seqs 225 out of 263
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 10:30:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048095.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048095hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.9 3.9E-05 1.3E-09 73.2 38.6 106 9-114 2-107 (284)
2 1c1g_A Tropomyosin; contractIl 98.8 0.0001 3.5E-09 70.2 36.9 103 11-113 11-113 (284)
3 1i84_S Smooth muscle myosin he 98.5 2E-07 6.9E-12 110.6 11.5 109 6-114 857-965 (1184)
4 1i84_S Smooth muscle myosin he 98.4 3.7E-07 1.3E-11 108.4 9.9 82 21-102 858-939 (1184)
5 3na7_A HP0958; flagellar bioge 97.6 0.0071 2.4E-07 59.9 20.8 26 171-196 125-150 (256)
6 3na7_A HP0958; flagellar bioge 97.5 0.018 6.1E-07 57.0 21.7 55 150-204 97-151 (256)
7 3vkg_A Dynein heavy chain, cyt 95.7 2.6 9.1E-05 54.8 28.3 17 298-314 2380-2396(3245)
8 2fxo_A Myosin heavy chain, car 94.9 0.85 2.9E-05 40.5 14.8 35 69-103 83-117 (129)
9 3hnw_A Uncharacterized protein 94.0 0.5 1.7E-05 42.7 11.3 69 40-108 67-135 (138)
10 2v71_A Nuclear distribution pr 93.6 5.1 0.00017 38.0 19.0 85 37-121 52-140 (189)
11 2efr_A General control protein 93.4 4.6 0.00016 37.1 19.3 89 18-106 26-114 (155)
12 3u1c_A Tropomyosin alpha-1 cha 93.2 3.5 0.00012 35.1 15.5 67 8-74 4-70 (101)
13 3vkg_A Dynein heavy chain, cyt 93.2 27 0.00091 45.9 28.7 11 424-434 2556-2566(3245)
14 3u59_A Tropomyosin beta chain; 93.0 3.8 0.00013 34.7 15.4 75 8-82 4-78 (101)
15 3o0z_A RHO-associated protein 92.9 5.9 0.0002 36.9 17.9 112 8-119 15-140 (168)
16 2v71_A Nuclear distribution pr 92.6 5.8 0.0002 37.6 16.7 9 112-120 113-121 (189)
17 1l8d_A DNA double-strand break 92.6 2.9 9.8E-05 35.6 13.6 38 23-60 6-43 (112)
18 3o0z_A RHO-associated protein 91.8 8.1 0.00028 35.9 19.9 73 45-117 38-110 (168)
19 3oja_B Anopheles plasmodium-re 91.8 1.8 6.2E-05 46.7 14.0 24 197-220 556-579 (597)
20 3oja_B Anopheles plasmodium-re 91.7 1.9 6.4E-05 46.6 14.0 17 90-106 544-560 (597)
21 1ic2_A Tropomyosin alpha chain 91.5 2.5 8.6E-05 34.4 11.3 47 70-116 28-74 (81)
22 2dfs_A Myosin-5A; myosin-V, in 91.4 2.8 9.6E-05 49.4 15.8 16 30-45 924-939 (1080)
23 3ol1_A Vimentin; structural ge 91.2 4.6 0.00016 35.3 13.4 38 8-45 22-59 (119)
24 3hnw_A Uncharacterized protein 91.0 2.4 8.3E-05 38.2 11.7 60 47-106 67-126 (138)
25 3ghg_A Fibrinogen alpha chain; 90.8 2.2 7.5E-05 46.1 12.8 27 452-478 485-513 (562)
26 3u1c_A Tropomyosin alpha-1 cha 90.4 7.5 0.00026 33.0 15.1 64 32-95 7-70 (101)
27 1ic2_A Tropomyosin alpha chain 90.3 3 0.0001 34.0 10.6 27 13-39 6-32 (81)
28 3tnu_B Keratin, type II cytosk 90.2 8.3 0.00029 33.9 14.3 69 21-92 30-98 (129)
29 3u59_A Tropomyosin beta chain; 89.4 9 0.00031 32.4 15.1 57 32-88 7-63 (101)
30 3tnu_A Keratin, type I cytoske 89.3 8.5 0.00029 34.0 13.7 69 21-92 32-100 (131)
31 2fxo_A Myosin heavy chain, car 88.5 12 0.00042 32.9 17.5 11 111-121 100-110 (129)
32 3ghg_A Fibrinogen alpha chain; 88.2 4.8 0.00016 43.5 13.0 31 26-56 63-93 (562)
33 3q8t_A Beclin-1; autophagy, AT 88.2 11 0.00037 31.8 14.4 56 46-101 37-92 (96)
34 1l8d_A DNA double-strand break 87.5 8.8 0.0003 32.5 12.2 42 14-55 4-45 (112)
35 2jee_A YIIU; FTSZ, septum, coi 87.3 8.8 0.0003 31.6 11.3 69 36-104 8-76 (81)
36 2dfs_A Myosin-5A; myosin-V, in 87.3 16 0.00056 43.0 18.2 51 64-114 979-1029(1080)
37 3swk_A Vimentin; cytoskeleton, 86.9 9.1 0.00031 31.6 11.4 74 31-104 4-77 (86)
38 3swk_A Vimentin; cytoskeleton, 86.8 9.1 0.00031 31.6 11.4 79 7-85 1-79 (86)
39 2b9c_A Striated-muscle alpha t 86.7 18 0.00062 32.8 17.9 113 9-121 13-125 (147)
40 1m1j_B Fibrinogen beta chain; 85.2 24 0.00083 37.7 16.6 71 8-78 87-158 (464)
41 3s4r_A Vimentin; alpha-helix, 82.7 20 0.00068 29.9 13.2 41 72-112 52-92 (93)
42 3ol1_A Vimentin; structural ge 82.0 25 0.00085 30.6 15.6 64 26-89 19-82 (119)
43 1deq_A Fibrinogen (alpha chain 82.0 15 0.00051 38.3 12.8 20 25-44 65-84 (390)
44 2v4h_A NF-kappa-B essential mo 80.2 28 0.00097 30.1 12.8 24 8-31 26-49 (110)
45 4gkw_A Spindle assembly abnorm 78.7 36 0.0012 30.4 18.5 30 87-116 102-131 (167)
46 2ocy_A RAB guanine nucleotide 78.1 41 0.0014 30.7 14.3 74 10-87 17-97 (154)
47 1m1j_A Fibrinogen alpha subuni 78.0 31 0.001 36.8 13.8 41 61-101 117-157 (491)
48 2v4h_A NF-kappa-B essential mo 76.8 36 0.0012 29.4 13.0 16 90-105 90-105 (110)
49 3trt_A Vimentin; cytoskeleton, 76.8 17 0.00057 28.9 9.1 19 26-44 8-26 (77)
50 1deq_A Fibrinogen (alpha chain 76.0 68 0.0023 33.4 15.5 51 37-87 63-113 (390)
51 2efr_A General control protein 75.5 49 0.0017 30.3 23.2 22 186-207 127-148 (155)
52 3q8t_A Beclin-1; autophagy, AT 75.1 36 0.0012 28.5 14.6 19 99-117 62-80 (96)
53 1m1j_B Fibrinogen beta chain; 72.3 82 0.0028 33.7 15.6 62 25-86 98-159 (464)
54 1m1j_C Fibrinogen gamma chain; 72.2 53 0.0018 34.5 14.0 40 6-45 23-63 (409)
55 1m1j_A Fibrinogen alpha subuni 72.0 84 0.0029 33.5 15.2 11 29-39 67-77 (491)
56 2e7s_A RAB guanine nucleotide 70.6 5.3 0.00018 35.9 5.1 73 11-87 6-85 (135)
57 3mq7_A Bone marrow stromal ant 69.0 59 0.002 28.4 12.9 17 45-61 50-66 (121)
58 3htk_A Structural maintenance 68.9 29 0.001 26.0 8.4 13 54-66 39-51 (60)
59 3bas_A Myosin heavy chain, str 68.3 49 0.0017 27.2 10.8 15 90-104 70-84 (89)
60 3mov_A Lamin-B1; LMNB1, B-type 66.6 53 0.0018 27.5 10.3 30 45-74 41-70 (95)
61 3a7p_A Autophagy protein 16; c 66.3 69 0.0023 29.2 11.5 59 47-105 67-125 (152)
62 2e7s_A RAB guanine nucleotide 66.2 72 0.0025 28.5 11.5 58 56-113 33-90 (135)
63 4h22_A Leucine-rich repeat fli 64.9 54 0.0018 28.1 9.9 60 12-71 18-81 (103)
64 2wt7_B Transcription factor MA 64.1 54 0.0018 27.4 9.6 79 7-86 7-86 (90)
65 3oja_A Leucine-rich immune mol 63.4 60 0.002 34.0 12.5 46 72-117 424-469 (487)
66 1cii_A Colicin IA; bacteriocin 62.7 1.7E+02 0.0057 31.4 15.8 7 438-444 573-579 (602)
67 3a7p_A Autophagy protein 16; c 58.5 1.1E+02 0.0037 27.9 11.8 48 70-117 69-116 (152)
68 1x8y_A Lamin A/C; structural p 58.4 63 0.0022 26.4 9.1 20 47-66 34-53 (86)
69 1m1j_C Fibrinogen gamma chain; 58.3 1.7E+02 0.006 30.6 14.7 15 25-39 36-50 (409)
70 3iox_A AGI/II, PA; alpha helix 58.3 2E+02 0.0067 31.0 15.0 37 21-57 10-46 (497)
71 2zqm_A Prefoldin beta subunit 56.6 87 0.003 26.1 12.0 11 45-55 31-41 (117)
72 2b9c_A Striated-muscle alpha t 56.3 1.1E+02 0.0039 27.4 16.0 91 14-104 4-94 (147)
73 2xzr_A Immunoglobulin-binding 56.2 92 0.0032 26.3 15.3 27 26-52 5-31 (114)
74 3ghg_C Fibrinogen gamma chain; 53.6 2.1E+02 0.0071 30.1 14.2 33 25-57 36-68 (411)
75 2w83_C C-JUN-amino-terminal ki 52.1 93 0.0032 25.2 9.1 60 39-98 14-73 (77)
76 1fxk_A Prefoldin; archaeal pro 51.2 1E+02 0.0035 25.3 11.8 18 40-57 14-31 (107)
77 3mq9_A Bone marrow stromal ant 51.2 94 0.0032 32.2 11.4 34 51-84 400-433 (471)
78 3cvf_A Homer-3, homer protein 49.6 95 0.0033 25.3 8.6 58 57-114 15-72 (79)
79 3i00_A HIP-I, huntingtin-inter 49.0 1.3E+02 0.0043 26.3 10.0 16 64-79 42-57 (120)
80 3ghg_B Fibrinogen beta chain; 47.4 2.1E+02 0.0073 30.4 13.2 51 7-57 81-132 (461)
81 2ocy_A RAB guanine nucleotide 45.6 1.8E+02 0.0061 26.5 19.2 89 14-113 7-95 (154)
82 2q6q_A Spindle POLE BODY compo 45.0 1E+02 0.0034 24.5 7.6 29 10-38 7-35 (74)
83 3plt_A Sphingolipid long chain 43.3 2.4E+02 0.0082 27.4 14.7 63 40-102 89-157 (234)
84 2no2_A HIP-I, huntingtin-inter 42.2 1.6E+02 0.0055 25.1 15.5 29 17-45 12-40 (107)
85 2no2_A HIP-I, huntingtin-inter 41.9 1.6E+02 0.0055 25.0 14.7 73 29-104 10-82 (107)
86 2v66_B Nuclear distribution pr 41.0 1.8E+02 0.006 25.2 15.7 51 59-109 39-89 (111)
87 3cve_A Homer protein homolog 1 40.9 1.4E+02 0.0047 23.9 10.4 58 57-114 9-66 (72)
88 1x79_B RAB GTPase binding effe 40.1 1.8E+02 0.0062 25.1 13.8 40 74-113 43-82 (112)
89 4etp_A Kinesin-like protein KA 39.9 56 0.0019 34.1 7.4 58 49-106 4-61 (403)
90 3a7o_A Autophagy protein 16; c 39.8 1.4E+02 0.0046 23.9 7.7 38 71-108 20-57 (75)
91 2c5k_T Syntaxin TLG1, T-snare 37.8 1.7E+02 0.006 24.2 9.1 19 11-29 8-26 (95)
92 3m91_A Proteasome-associated A 37.0 1.2E+02 0.0041 22.6 6.7 41 26-66 8-48 (51)
93 3qne_A Seryl-tRNA synthetase, 36.6 3.2E+02 0.011 29.2 12.8 29 81-109 76-104 (485)
94 1wle_A Seryl-tRNA synthetase; 36.6 3.5E+02 0.012 29.0 13.1 25 81-105 121-145 (501)
95 4gkw_A Spindle assembly abnorm 35.6 2.4E+02 0.0082 25.1 20.7 71 27-97 11-81 (167)
96 1ses_A Seryl-tRNA synthetase; 35.6 2E+02 0.0067 30.1 10.8 16 418-433 296-311 (421)
97 3mq7_A Bone marrow stromal ant 35.1 2.3E+02 0.0078 24.7 13.5 33 14-46 33-65 (121)
98 1x8y_A Lamin A/C; structural p 34.9 1.8E+02 0.0062 23.6 9.6 17 62-78 35-51 (86)
99 1jcd_A Major outer membrane li 34.4 1.4E+02 0.005 22.3 7.6 16 84-99 33-48 (52)
100 4etp_A Kinesin-like protein KA 34.0 1E+02 0.0035 32.1 8.3 34 66-99 7-40 (403)
101 2rlw_A PLNF; toxin; NMR {Lacto 34.0 6.7 0.00023 26.2 -0.5 24 356-379 10-33 (34)
102 2xdj_A Uncharacterized protein 33.4 2E+02 0.0067 23.5 10.4 13 76-88 41-53 (83)
103 2xdj_A Uncharacterized protein 33.4 2E+02 0.0067 23.5 10.2 32 56-87 28-59 (83)
104 1ci6_A Transcription factor AT 33.3 1.3E+02 0.0044 23.0 6.7 32 50-81 25-56 (63)
105 2xzr_A Immunoglobulin-binding 33.1 2.2E+02 0.0076 24.0 15.7 72 42-113 7-78 (114)
106 1wle_A Seryl-tRNA synthetase; 32.8 2.7E+02 0.0094 29.8 11.5 27 87-113 120-146 (501)
107 1fxk_C Protein (prefoldin); ar 32.7 2.3E+02 0.008 24.2 13.9 42 61-102 87-128 (133)
108 3iv1_A Tumor susceptibility ge 32.7 2E+02 0.0068 23.3 8.6 64 9-72 14-77 (78)
109 3ghg_B Fibrinogen beta chain; 31.5 4.1E+02 0.014 28.3 12.3 36 25-60 93-128 (461)
110 3uux_B Mitochondrial division 30.8 3.8E+02 0.013 26.1 11.2 29 76-104 177-205 (242)
111 3s4r_A Vimentin; alpha-helix, 30.7 2.3E+02 0.0078 23.4 12.2 27 20-46 16-42 (93)
112 1d7m_A Cortexillin I; coiled-c 29.4 2.5E+02 0.0085 23.4 13.6 63 42-104 19-81 (101)
113 2dq0_A Seryl-tRNA synthetase; 28.9 2.5E+02 0.0087 29.6 10.4 25 409-433 312-336 (455)
114 3iox_A AGI/II, PA; alpha helix 28.4 5.8E+02 0.02 27.4 13.8 28 10-37 6-33 (497)
115 2l5g_B Putative uncharacterize 28.3 1.1E+02 0.0037 22.1 4.9 28 20-47 9-36 (42)
116 1d7m_A Cortexillin I; coiled-c 28.1 2.6E+02 0.0089 23.3 15.5 94 11-104 2-95 (101)
117 3nfq_A Transcription factor IW 28.1 1E+02 0.0036 28.5 6.3 26 408-433 130-155 (170)
118 3u06_A Protein claret segregat 26.9 1.4E+02 0.0049 31.1 7.9 56 50-105 5-60 (412)
119 1go4_E MAD1 (mitotic arrest de 25.8 3E+02 0.01 23.3 8.2 65 40-104 11-96 (100)
120 2yko_A LINE-1 ORF1P; RNA-bindi 25.8 1.5E+02 0.0051 28.8 7.1 23 10-32 3-25 (233)
121 3i00_A HIP-I, huntingtin-inter 25.4 3.3E+02 0.011 23.6 10.6 14 74-87 45-58 (120)
122 3qne_A Seryl-tRNA synthetase, 24.2 2.9E+02 0.0098 29.6 9.7 14 418-431 317-330 (485)
123 2xpp_A IWS1, ECU08_0440; trans 24.2 1E+02 0.0036 27.7 5.4 26 408-433 115-140 (145)
124 2dq0_A Seryl-tRNA synthetase; 23.8 2.8E+02 0.0095 29.2 9.5 24 83-106 76-99 (455)
125 3ghg_C Fibrinogen gamma chain; 23.4 6.6E+02 0.022 26.3 13.1 100 7-106 24-128 (411)
126 2zdi_C Prefoldin subunit alpha 23.2 3.8E+02 0.013 23.5 11.5 41 13-53 9-52 (151)
127 3l4q_C Phosphatidylinositol 3- 23.0 4.5E+02 0.015 24.2 19.3 60 19-78 9-68 (170)
128 2lw1_A ABC transporter ATP-bin 22.6 3E+02 0.01 22.1 9.0 18 22-39 24-41 (89)
129 3hhm_B NISH2 P85alpha; PI3KCA, 22.0 6.5E+02 0.022 25.7 13.9 132 27-169 119-266 (373)
130 3l4q_C Phosphatidylinositol 3- 20.8 5E+02 0.017 23.9 15.9 49 36-84 12-60 (170)
131 2k48_A Nucleoprotein; viral pr 20.4 4E+02 0.014 22.7 8.9 32 18-49 33-64 (107)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.91 E-value=3.9e-05 Score=73.23 Aligned_cols=106 Identities=16% Similarity=0.234 Sum_probs=66.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 048095 9 RGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEES 88 (535)
Q Consensus 9 ~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~ 88 (535)
.++.+|+...+.+++.+...+.++...+..+...+..+...+..+...+..+...+......+...+..+..+...+..+
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (284)
T 1c1g_A 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDA 81 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777777776666666666666666666666666666666666666666555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHH
Q 048095 89 NSELQSKEIELGLLQKRVGECNCELE 114 (535)
Q Consensus 89 e~El~~~eeEL~~lqk~l~E~~~el~ 114 (535)
...+......+..+...+..+..++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (284)
T 1c1g_A 82 EADVASLNRRIQLFEEELDRAQERLA 107 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555544444443
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.79 E-value=0.0001 Score=70.25 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=45.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 11 FNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNS 90 (535)
Q Consensus 11 ~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~ 90 (535)
+...++.....+..+...+..+...+..+...+..+...+..+...+..+...+......+......+..+...+.....
T Consensus 11 l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (284)
T 1c1g_A 11 LKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNR 90 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhH
Q 048095 91 ELQSKEIELGLLQKRVGECNCEL 113 (535)
Q Consensus 91 El~~~eeEL~~lqk~l~E~~~el 113 (535)
.+.....++..+...+.++...+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~ 113 (284)
T 1c1g_A 91 RIQLFEEELDRAQERLATALQKL 113 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.54 E-value=2e-07 Score=110.62 Aligned_cols=109 Identities=17% Similarity=0.118 Sum_probs=60.3
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 048095 6 NEIRGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEI 85 (535)
Q Consensus 6 ~~~~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eI 85 (535)
.+|+....+|..++.+|.++++.+.+++.++..+..+...+..++......+..+...+..+..++..++..+..++.++
T Consensus 857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~el 936 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARI 936 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888888888888888888888887777777777666666665555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 048095 86 EESNSELQSKEIELGLLQKRVGECNCELE 114 (535)
Q Consensus 86 ee~e~El~~~eeEL~~lqk~l~E~~~el~ 114 (535)
++.+..+.....++..+...+.++..+++
T Consensus 937 ee~ee~l~el~~e~~~le~el~~L~~ele 965 (1184)
T 1i84_S 937 EEEEERSQQLQAEKKKMQQQMLDLEEQLE 965 (1184)
T ss_dssp HHHHHC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544444444444444444443
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.43 E-value=3.7e-07 Score=108.36 Aligned_cols=82 Identities=11% Similarity=0.096 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 21 QLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELG 100 (535)
Q Consensus 21 dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~ 100 (535)
++...+..+.+++.++..+...+.++..++..++.++..+..++......+......+..+..++..++.++.....++.
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~ele 937 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIE 937 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444333333333333333333333333333333333333333
Q ss_pred HH
Q 048095 101 LL 102 (535)
Q Consensus 101 ~l 102 (535)
..
T Consensus 938 e~ 939 (1184)
T 1i84_S 938 EE 939 (1184)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.58 E-value=0.0071 Score=59.86 Aligned_cols=26 Identities=12% Similarity=-0.035 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhhHHHhHHHhhhhh
Q 048095 171 RQLAVVQKRIGECNNELQLKENELNL 196 (535)
Q Consensus 171 k~le~~~k~~~~~~~~l~~k~k~l~~ 196 (535)
..++.....+.....+|.....+++.
T Consensus 125 ~~l~~~~~~l~~~~~~l~~~~~~~~~ 150 (256)
T 3na7_A 125 EKQEDLKKEMLELEKLALELESLVEN 150 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.45 E-value=0.018 Score=56.99 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHhHHHhhhhhHHHHHHHH
Q 048095 150 EELSLLQKSIRECKGELDSKERQLAVVQKRIGECNNELQLKENELNLVKTVVEHC 204 (535)
Q Consensus 150 ~eL~~~~k~i~e~~~EL~~Kek~le~~~k~~~~~~~~l~~k~k~l~~~~~~~~~~ 204 (535)
+++....+.+..+..++.-....++..+..+......+.....++...+..+..-
T Consensus 97 kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 151 (256)
T 3na7_A 97 IEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENE 151 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444444433333
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.68 E-value=2.6 Score=54.84 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhhhhhcc
Q 048095 298 IKKSIKELESAKKELEQ 314 (535)
Q Consensus 298 ~~k~~ke~el~ekq~e~ 314 (535)
+..++++-+.+++++++
T Consensus 2380 I~~kl~~a~~te~~I~~ 2396 (3245)
T 3vkg_A 2380 IALKVEETETVMQEISE 2396 (3245)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555555555544
No 8
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.86 E-value=0.85 Score=40.48 Aligned_cols=35 Identities=17% Similarity=0.084 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 69 GELQSKQGELALVEKEIEESNSELQSKEIELGLLQ 103 (535)
Q Consensus 69 ~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lq 103 (535)
..+..+...++..+.....+......++.+++.+.
T Consensus 83 ~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk 117 (129)
T 2fxo_A 83 AKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELK 117 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 9
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.97 E-value=0.5 Score=42.69 Aligned_cols=69 Identities=17% Similarity=0.125 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048095 40 QKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGE 108 (535)
Q Consensus 40 aek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E 108 (535)
+..|...+.++..++.++.++.+++..++.++...+..++.+..++.+++.++..+..++..++..+++
T Consensus 67 adEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777888888888888888888888888888888888888888877777777777777777776655443
No 10
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.60 E-value=5.1 Score=38.00 Aligned_cols=85 Identities=11% Similarity=0.073 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 048095 37 ALVQKEIEECNSELWCKEKELGLVQKRIRGCNGE----LQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCE 112 (535)
Q Consensus 37 e~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~e----Ie~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~e 112 (535)
.....+...+...+..+..++...+........+ +..+++++..+......+...+..++..-+.+.......+.-
T Consensus 52 ~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~S 131 (189)
T 2v71_A 52 VQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMS 131 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Confidence 3334444444444444444444444444444333 444444444444444444444444444444444444444444
Q ss_pred HHHHHHhhh
Q 048095 113 LECKQQQLG 121 (535)
Q Consensus 113 l~~k~~~~~ 121 (535)
|+.-+..++
T Consensus 132 leD~e~kln 140 (189)
T 2v71_A 132 LEDFEQRLN 140 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 11
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=93.45 E-value=4.6 Score=37.10 Aligned_cols=89 Identities=17% Similarity=0.180 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 18 KERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEI 97 (535)
Q Consensus 18 te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~ee 97 (535)
++.+|+|.++.....+..+..|...+.-...-+..++..-.......+..+.+|..++..+-.++...+..+.....++.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666665555555555555555544444444445555555555554444444444444444444
Q ss_pred HHHHHHHHH
Q 048095 98 ELGLLQKRV 106 (535)
Q Consensus 98 EL~~lqk~l 106 (535)
.++.+...+
T Consensus 106 ~id~lEd~L 114 (155)
T 2efr_A 106 SIDDLEDEL 114 (155)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 12
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.23 E-value=3.5 Score=35.06 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=34.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 048095 8 IRGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSK 74 (535)
Q Consensus 8 ~~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~ 74 (535)
+....+|+...+.+.+...|.....+.++.....+......++..|...++.+..+++..+..+...
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666655555555544444444444433333333333333333
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.17 E-value=27 Score=45.89 Aligned_cols=11 Identities=27% Similarity=0.682 Sum_probs=6.9
Q ss_pred HHHHHHhcccc
Q 048095 424 AGEWKKKMGVI 434 (535)
Q Consensus 424 A~~WK~~i~~~ 434 (535)
+..||.-+..+
T Consensus 2556 ~~~W~~~~~s~ 2566 (3245)
T 3vkg_A 2556 SSDWKQFFGKD 2566 (3245)
T ss_dssp HHHHHHHTCSS
T ss_pred HHHHHHHhccc
Confidence 35688877543
No 14
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=92.97 E-value=3.8 Score=34.72 Aligned_cols=75 Identities=12% Similarity=0.125 Sum_probs=38.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 048095 8 IRGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVE 82 (535)
Q Consensus 8 ~~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le 82 (535)
+....+|+...+.+.+...|.....+.++.....+......++..+...+..+....+.....+...+..++..+
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~e 78 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAE 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666555555555444444444444444444443333333333333333
No 15
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=92.93 E-value=5.9 Score=36.86 Aligned_cols=112 Identities=13% Similarity=0.058 Sum_probs=54.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH-------HHHHHHhHHHHHH
Q 048095 8 IRGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWC-------KEKELGLV-------QKRIRGCNGELQS 73 (535)
Q Consensus 8 ~~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~-------LE~eLeeL-------K~eIeE~e~eIe~ 73 (535)
+.++|.+|.+--..=.|....-.|+......+.....++...+.. |+.++..+ ++.-..-...+..
T Consensus 15 L~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~e 94 (168)
T 3o0z_A 15 LEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGD 94 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666665655666666666665555553333333333333 33333222 2222222233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 048095 74 KQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQQQ 119 (535)
Q Consensus 74 ~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~~~ 119 (535)
++..+..+..+++...........+-+.+++.++.+.++-.+.+++
T Consensus 95 lq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid 140 (168)
T 3o0z_A 95 LQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEID 140 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4444444445555555555555555555555555555555555544
No 16
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.61 E-value=5.8 Score=37.59 Aligned_cols=9 Identities=44% Similarity=0.553 Sum_probs=3.4
Q ss_pred hHHHHHHhh
Q 048095 112 ELECKQQQL 120 (535)
Q Consensus 112 el~~k~~~~ 120 (535)
+|+...-.+
T Consensus 113 eLEq~NDdl 121 (189)
T 2v71_A 113 ELEQANDDL 121 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhHH
Confidence 333333333
No 17
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=92.61 E-value=2.9 Score=35.58 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=19.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 23 RFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLV 60 (535)
Q Consensus 23 erved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeL 60 (535)
..+.+.+.++...+..|...+..+..++..+...+..+
T Consensus 6 ~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 6 EELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444555555555555555555555555555444
No 18
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=91.84 E-value=8.1 Score=35.92 Aligned_cols=73 Identities=15% Similarity=0.093 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 048095 45 ECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQ 117 (535)
Q Consensus 45 Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~ 117 (535)
++...+..++....++......+......++.++..+...+..-..........+..++..+..+.-||+.-.
T Consensus 38 El~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k 110 (168)
T 3o0z_A 38 EMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLK 110 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555666666666666666666666666666666666666666666666666666664433
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.77 E-value=1.8 Score=46.72 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHh
Q 048095 197 VKTVVEHCLQKLNLKKEELSLLQK 220 (535)
Q Consensus 197 ~~~~~~~~~kele~k~~~~~~~~~ 220 (535)
.++.+.+..++......++++++.
T Consensus 556 ~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 556 KRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444445555555553
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.72 E-value=1.9 Score=46.58 Aligned_cols=17 Identities=18% Similarity=0.049 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 048095 90 SELQSKEIELGLLQKRV 106 (535)
Q Consensus 90 ~El~~~eeEL~~lqk~l 106 (535)
.+....+..++..++.+
T Consensus 544 ~~~~~le~~~~~~~~~~ 560 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQ 560 (597)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHH
Confidence 33333333333333333
No 21
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=91.49 E-value=2.5 Score=34.42 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 048095 70 ELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECK 116 (535)
Q Consensus 70 eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k 116 (535)
.+.........++.+|..++..+...+.+++..+..+.+....|+..
T Consensus 28 ~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 28 DKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444444444444444433
No 22
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.36 E-value=2.8 Score=49.45 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHH
Q 048095 30 GESKGELALVQKEIEE 45 (535)
Q Consensus 30 ~ElEkqle~Laek~~E 45 (535)
..+++++..|+.++.+
T Consensus 924 ~~LE~kl~eLq~rL~~ 939 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDE 939 (1080)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444333333
No 23
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.19 E-value=4.6 Score=35.31 Aligned_cols=38 Identities=8% Similarity=0.153 Sum_probs=18.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 048095 8 IRGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEE 45 (535)
Q Consensus 8 ~~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~E 45 (535)
|++...+++++..+-.++.-.+.-+....+.+..+|+.
T Consensus 22 I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~ 59 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE 59 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 44444455555544444444444444444444444443
No 24
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=91.05 E-value=2.4 Score=38.17 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 47 NSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRV 106 (535)
Q Consensus 47 k~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l 106 (535)
..++-.+..++..+..++.+...++..+..++..+.-+++....++..+..++..++.++
T Consensus 67 adEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444444443333
No 25
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=90.82 E-value=2.2 Score=46.08 Aligned_cols=27 Identities=7% Similarity=0.106 Sum_probs=0.0
Q ss_pred cCCCCCCh--HHHHHHHHHhhhhhhhHHH
Q 048095 452 RLAPAFDG--NELESLLDIVAHYRQTAKL 478 (535)
Q Consensus 452 gi~s~Fd~--del~~Lv~~va~~~~~~~L 478 (535)
|-..+|.. -+...+|...+..+..|.+
T Consensus 485 g~ld~~~~rhpd~~~ff~~~stg~~f~~~ 513 (562)
T 3ghg_A 485 GTLDGFRHRHPDEAAFFDTASTGKTFPGF 513 (562)
T ss_dssp -----------------------------
T ss_pred cchhhhhhhCcchHhhccccccCcccccc
Confidence 66666633 5666677666665554433
No 26
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=90.41 E-value=7.5 Score=32.97 Aligned_cols=64 Identities=13% Similarity=0.174 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 32 SKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSK 95 (535)
Q Consensus 32 lEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~ 95 (535)
|.+.+..|....+.....+..++..+......-.....++.++++.+..++.+++.++..+...
T Consensus 7 IKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 7 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444444444444433333333
No 27
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=90.34 E-value=3 Score=33.99 Aligned_cols=27 Identities=11% Similarity=0.026 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 048095 13 LKLQCKERQLRFLEKRIGESKGELALV 39 (535)
Q Consensus 13 ~KL~~te~dLerved~i~ElEkqle~L 39 (535)
+|+...+.+.+...+.....+.++...
T Consensus 6 kKm~~lk~e~d~a~~~~~~~e~~l~~~ 32 (81)
T 1ic2_A 6 KKMQMLKLDKENALDRAEQAEADKKAA 32 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433333
No 28
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=90.17 E-value=8.3 Score=33.91 Aligned_cols=69 Identities=16% Similarity=0.262 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 21 QLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSEL 92 (535)
Q Consensus 21 dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El 92 (535)
+|......|.+++.++..|..++..+...-..|+..+.+..... ...+...+..|..++.++...+.++
T Consensus 30 ~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~---~~~l~~~q~~i~~lE~eL~~~r~e~ 98 (129)
T 3tnu_B 30 DLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRG---ELALKDARNKLAELEEALQKAKQDM 98 (129)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34445555555555555555555555555555555554443322 2233344444444444444444443
No 29
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=89.37 E-value=9 Score=32.35 Aligned_cols=57 Identities=19% Similarity=0.175 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 048095 32 SKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEES 88 (535)
Q Consensus 32 lEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~ 88 (535)
|.+.+..|....+.....+..++.++......-.....++.++++.+..++..++.+
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~ 63 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKY 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443333333334444433333333333333
No 30
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=89.33 E-value=8.5 Score=33.99 Aligned_cols=69 Identities=17% Similarity=0.137 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 21 QLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSEL 92 (535)
Q Consensus 21 dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El 92 (535)
++......|.+++.++..|..++..+...-..|+..+.+..... ...+...+..|..++.++...+.++
T Consensus 32 ~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~---~~~l~~~q~~i~~lE~eL~~~r~em 100 (131)
T 3tnu_A 32 LVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRY---CMQLAQIQEMIGSVEEQLAQLRCEM 100 (131)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555554443322 2233334444444444444444443
No 31
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=88.51 E-value=12 Score=32.85 Aligned_cols=11 Identities=36% Similarity=0.588 Sum_probs=4.6
Q ss_pred hhHHHHHHhhh
Q 048095 111 CELECKQQQLG 121 (535)
Q Consensus 111 ~el~~k~~~~~ 121 (535)
.+|....+.+.
T Consensus 100 ~~L~~~kkkle 110 (129)
T 2fxo_A 100 AELTAKKRKLE 110 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 32
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.24 E-value=4.8 Score=43.52 Aligned_cols=31 Identities=23% Similarity=0.077 Sum_probs=15.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 26 EKRIGESKGELALVQKEIEECNSELWCKEKE 56 (535)
Q Consensus 26 ed~i~ElEkqle~Laek~~Elk~EL~~LE~e 56 (535)
...|.++..+++.++..+.....-+..+...
T Consensus 63 tkrINELKnqLEdlsKnsKdseqy~k~~~E~ 93 (562)
T 3ghg_A 63 TNRINKLKNSLFEYQKNNKDSHSLTTNIMEI 93 (562)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence 4455556666665544444444444333333
No 33
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=88.20 E-value=11 Score=31.79 Aligned_cols=56 Identities=9% Similarity=0.114 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 46 CNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGL 101 (535)
Q Consensus 46 lk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~ 101 (535)
+..++..++.+...+..+-...=.++.....++..+..+...+.+.+......|+.
T Consensus 37 l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdk 92 (96)
T 3q8t_A 37 VAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333334444444444444444444444444444433
No 34
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=87.48 E-value=8.8 Score=32.49 Aligned_cols=42 Identities=14% Similarity=0.133 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 14 KLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEK 55 (535)
Q Consensus 14 KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~ 55 (535)
.|+.++..++.+...+.++......+..++..+...+..++.
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555555555555555555555555555555555555543
No 35
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=87.33 E-value=8.8 Score=31.56 Aligned_cols=69 Identities=12% Similarity=0.133 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 36 LALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQK 104 (535)
Q Consensus 36 le~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk 104 (535)
++.|..++......|.-+..++++++.+...+..+.+........+..+++.++.+......+|+.+=.
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666777777777777777777777777777777777777777777777777777765543
No 36
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.28 E-value=16 Score=43.02 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=24.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 048095 64 IRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELE 114 (535)
Q Consensus 64 IeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~ 114 (535)
....+..+..++.++..++.++.....+....++.++.++.++.+....|+
T Consensus 979 ~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~ 1029 (1080)
T 2dfs_A 979 AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELK 1029 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555555555544444443333333
No 37
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=86.93 E-value=9.1 Score=31.61 Aligned_cols=74 Identities=8% Similarity=0.104 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 31 ESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQK 104 (535)
Q Consensus 31 ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk 104 (535)
++..++..+...-..+..++..+...+..++...++.-..-...+.++..+.+.+.++-..+..++.++..++.
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~e 77 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQE 77 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444433
No 38
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=86.84 E-value=9.1 Score=31.61 Aligned_cols=79 Identities=10% Similarity=0.095 Sum_probs=48.6
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 048095 7 EIRGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEI 85 (535)
Q Consensus 7 ~~~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eI 85 (535)
+|++...++++...+=.++.-.+.-.....+.+..+|+.=..--...+.++..+++.++...-....++.+++.+..+|
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777777666666666666665555555566665555555555544444444444444444
No 39
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=86.70 E-value=18 Score=32.76 Aligned_cols=113 Identities=12% Similarity=0.185 Sum_probs=79.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 048095 9 RGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEES 88 (535)
Q Consensus 9 ~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~ 88 (535)
.....+|..+..-|........+.+.-...|..+-..-...+..++.+|.+.+..-.+-...+....+.+..++..+...
T Consensus 13 er~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLera 92 (147)
T 2b9c_A 13 DRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERA 92 (147)
T ss_dssp GGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34455677777777777777788777788887777777777888888887777666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 048095 89 NSELQSKEIELGLLQKRVGECNCELECKQQQLG 121 (535)
Q Consensus 89 e~El~~~eeEL~~lqk~l~E~~~el~~k~~~~~ 121 (535)
.......+..+..+...+.....-|.|.+.--+
T Consensus 93 eeRae~aE~k~~eLEeeL~~~~~nlKsLE~~ee 125 (147)
T 2b9c_A 93 EERAELSEGKCAELEEELKTVTNNLKSLEDKVE 125 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 666666666666666666666666666654333
No 40
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=85.23 E-value=24 Score=37.73 Aligned_cols=71 Identities=14% Similarity=0.091 Sum_probs=34.7
Q ss_pred hhhhhhhHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 048095 8 IRGFNLKLQC-KERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGEL 78 (535)
Q Consensus 8 ~~~~~~KL~~-te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeI 78 (535)
|.++-.+-+. ++.+|..+++.+.++.........-+..++..+...+.++......|.+....++..+..|
T Consensus 87 l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i 158 (464)
T 1m1j_B 87 LQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYI 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHH
Confidence 4444443333 4555666666666665544443334444555555555555544444444444444444333
No 41
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=82.72 E-value=20 Score=29.95 Aligned_cols=41 Identities=10% Similarity=0.160 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 048095 72 QSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCE 112 (535)
Q Consensus 72 e~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~e 112 (535)
..+...|..+...|.....+...+..+++.++..+..+..+
T Consensus 52 ~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 52 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34577788888888888888888888888877776555443
No 42
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=82.05 E-value=25 Score=30.57 Aligned_cols=64 Identities=6% Similarity=0.145 Sum_probs=31.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 048095 26 EKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESN 89 (535)
Q Consensus 26 ed~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e 89 (535)
+..|.++..++..++..-..+..++..+...+..++.+.+..-......+.++..+.+.+++.-
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~ 82 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNAS 82 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHH
Confidence 3445555555555555555555555555555555554444444444444444444444444433
No 43
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=82.02 E-value=15 Score=38.25 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=9.5
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q 048095 25 LEKRIGESKGELALVQKEIE 44 (535)
Q Consensus 25 ved~i~ElEkqle~Laek~~ 44 (535)
+...|.++..++..+..-+.
T Consensus 65 ~~~rIe~L~~~L~~~s~s~~ 84 (390)
T 1deq_A 65 FTSRINKLRDSLFNYQKNSK 84 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34455555555555533333
No 44
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=80.18 E-value=28 Score=30.07 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=9.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHh
Q 048095 8 IRGFNLKLQCKERQLRFLEKRIGE 31 (535)
Q Consensus 8 ~~~~~~KL~~te~dLerved~i~E 31 (535)
|...+-+|...+.-|..-.+.+.+
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~ide 49 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDK 49 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444443333333
No 45
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=78.65 E-value=36 Score=30.38 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 048095 87 ESNSELQSKEIELGLLQKRVGECNCELECK 116 (535)
Q Consensus 87 e~e~El~~~eeEL~~lqk~l~E~~~el~~k 116 (535)
+++..+..+..=...+...++-+..||+.-
T Consensus 102 ELEADLKEKDsMVe~LT~TiG~LrKELEdE 131 (167)
T 4gkw_A 102 ELEADLKEKDSMVESLTETIGILRKELENE 131 (167)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444555555555433
No 46
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=78.07 E-value=41 Score=30.74 Aligned_cols=74 Identities=9% Similarity=0.102 Sum_probs=37.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHH
Q 048095 10 GFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQ-------KRIRGCNGELQSKQGELALVE 82 (535)
Q Consensus 10 ~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK-------~eIeE~e~eIe~~qkeIe~le 82 (535)
+.-..|..|..+|......+..++. +..+|..+..++...+.++..+. ..=...+.....+..+++.+.
T Consensus 17 ~LeD~L~~~R~el~~~~~ri~~lE~----~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLT 92 (154)
T 2ocy_A 17 HLEEQLNKSLKTIASQKAAIENYNQ----LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 92 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHH----HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667777777766665555443 23344444444444444444443 333444445555555555555
Q ss_pred HHHHH
Q 048095 83 KEIEE 87 (535)
Q Consensus 83 ~eIee 87 (535)
..+-+
T Consensus 93 asLFe 97 (154)
T 2ocy_A 93 ASLFD 97 (154)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 47
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=77.97 E-value=31 Score=36.79 Aligned_cols=41 Identities=15% Similarity=0.368 Sum_probs=18.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 61 QKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGL 101 (535)
Q Consensus 61 K~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~ 101 (535)
+++|.-++..+...-..|..++.-|++...++++++..|+-
T Consensus 117 e~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 117 RRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444443
No 48
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=76.79 E-value=36 Score=29.41 Aligned_cols=16 Identities=19% Similarity=0.192 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 048095 90 SELQSKEIELGLLQKR 105 (535)
Q Consensus 90 ~El~~~eeEL~~lqk~ 105 (535)
.++..+..++..++.+
T Consensus 90 ~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 90 EKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3333333344444443
No 49
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=76.76 E-value=17 Score=28.86 Aligned_cols=19 Identities=5% Similarity=0.034 Sum_probs=12.1
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q 048095 26 EKRIGESKGELALVQKEIE 44 (535)
Q Consensus 26 ed~i~ElEkqle~Laek~~ 44 (535)
..++.++..+++.++.+..
T Consensus 8 ~~il~eiRaQYE~ia~knr 26 (77)
T 3trt_A 8 TAAMRDVRQQYESVAAKNL 26 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 3566777777777755443
No 50
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=76.01 E-value=68 Score=33.40 Aligned_cols=51 Identities=6% Similarity=0.018 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 048095 37 ALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEE 87 (535)
Q Consensus 37 e~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee 87 (535)
..+..+|.+++..+..+..........+..+...+...+++.+..+..+.+
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e 113 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQ 113 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHH
Confidence 333444444444444444444444333333333333333333333333333
No 51
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=75.47 E-value=49 Score=30.25 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=8.6
Q ss_pred HHhHHHhhhhhHHHHHHHHHHH
Q 048095 186 ELQLKENELNLVKTVVEHCLQK 207 (535)
Q Consensus 186 ~l~~k~k~l~~~~~~~~~~~ke 207 (535)
+|..--.+|..+...+.+..++
T Consensus 127 eLd~tl~el~~~~~~~~~~~~~ 148 (155)
T 2efr_A 127 EMKQLEDKVEELLSKNYHLENE 148 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccchHHHHHH
Confidence 3333333333344444444333
No 52
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=75.11 E-value=36 Score=28.53 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=7.6
Q ss_pred HHHHHHHHhhhhhhHHHHH
Q 048095 99 LGLLQKRVGECNCELECKQ 117 (535)
Q Consensus 99 L~~lqk~l~E~~~el~~k~ 117 (535)
.+..+..+.++..++.|.+
T Consensus 62 yn~~~~ql~e~~dE~~Sl~ 80 (96)
T 3q8t_A 62 YSEFKRQQLELDDELKSVE 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444433
No 53
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=72.33 E-value=82 Score=33.67 Aligned_cols=62 Identities=15% Similarity=0.072 Sum_probs=36.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 048095 25 LEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIE 86 (535)
Q Consensus 25 ved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIe 86 (535)
|+..|.+++..++.+.+...+...-+..+...+.....++......+......++.....|+
T Consensus 98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~ 159 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIK 159 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHH
Confidence 55666666666666655555555555555556666666666666566666666655555554
No 54
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=72.25 E-value=53 Score=34.51 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=26.3
Q ss_pred cchhhhhhhHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 048095 6 NEIRGFNLKLQC-KERQLRFLEKRIGESKGELALVQKEIEE 45 (535)
Q Consensus 6 ~~~~~~~~KL~~-te~dLerved~i~ElEkqle~Laek~~E 45 (535)
=.|.+|-.|-+. +..+|..+++++.++.....+...-+..
T Consensus 23 C~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~ 63 (409)
T 1m1j_C 23 CGIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQH 63 (409)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777777 7777777777777776665555433333
No 55
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=71.95 E-value=84 Score=33.50 Aligned_cols=11 Identities=27% Similarity=0.244 Sum_probs=4.0
Q ss_pred HHhHHHHHHHH
Q 048095 29 IGESKGELALV 39 (535)
Q Consensus 29 i~ElEkqle~L 39 (535)
|.++...+..+
T Consensus 67 I~kLkn~L~~~ 77 (491)
T 1m1j_A 67 IDNIRQQLADS 77 (491)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 56
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.60 E-value=5.3 Score=35.89 Aligned_cols=73 Identities=12% Similarity=0.143 Sum_probs=39.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHH
Q 048095 11 FNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNG-------ELQSKQGELALVEK 83 (535)
Q Consensus 11 ~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~-------eIe~~qkeIe~le~ 83 (535)
.-..|..+..+|......+.+++. +..+|.++.+.+...+.++..+...+.+... ....+..+++.+..
T Consensus 6 LEd~L~~~r~~l~~~~~~~~~le~----l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTa 81 (135)
T 2e7s_A 6 LEEQLNKSLKTIASQKAAIENYNQ----LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 81 (135)
T ss_dssp CCSTTTHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677777777777666655544 4445555555555555555555444444443 44444444444444
Q ss_pred HHHH
Q 048095 84 EIEE 87 (535)
Q Consensus 84 eIee 87 (535)
.+-+
T Consensus 82 sLFe 85 (135)
T 2e7s_A 82 SLFD 85 (135)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 57
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=68.97 E-value=59 Score=28.40 Aligned_cols=17 Identities=12% Similarity=0.069 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 048095 45 ECNSELWCKEKELGLVQ 61 (535)
Q Consensus 45 Elk~EL~~LE~eLeeLK 61 (535)
.|+.-+..|.+.|...+
T Consensus 50 TCNqTV~tL~~SL~~ek 66 (121)
T 3mq7_A 50 TANHTVMALMASLDAEK 66 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 58
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=68.86 E-value=29 Score=26.03 Aligned_cols=13 Identities=8% Similarity=0.174 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 048095 54 EKELGLVQKRIRG 66 (535)
Q Consensus 54 E~eLeeLK~eIeE 66 (535)
...++.+...|..
T Consensus 39 ~~~l~~~~~~I~~ 51 (60)
T 3htk_A 39 FEKLNTIRDEVIK 51 (60)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 59
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=68.28 E-value=49 Score=27.20 Aligned_cols=15 Identities=33% Similarity=0.215 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 048095 90 SELQSKEIELGLLQK 104 (535)
Q Consensus 90 ~El~~~eeEL~~lqk 104 (535)
.....++..|..++.
T Consensus 70 ~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 70 SKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 60
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=66.65 E-value=53 Score=27.49 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 048095 45 ECNSELWCKEKELGLVQKRIRGCNGELQSK 74 (535)
Q Consensus 45 Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~ 74 (535)
.+...+..++.++..++..+.....+++.+
T Consensus 41 ~~q~~i~~lE~eL~~~r~e~~~ql~EYq~L 70 (95)
T 3mov_A 41 NSRRMLTDKEREMAEIRDQMQQQLNDYEQL 70 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555444444444333
No 61
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=66.35 E-value=69 Score=29.22 Aligned_cols=59 Identities=19% Similarity=0.124 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 47 NSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKR 105 (535)
Q Consensus 47 k~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~ 105 (535)
...+..|+.++..+..+|...+..+....+.++.+..++..++.+....+..++.++.+
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKE 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555555555666666666666666666666666666666666666666655554
No 62
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=66.16 E-value=72 Score=28.53 Aligned_cols=58 Identities=10% Similarity=0.138 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 048095 56 ELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCEL 113 (535)
Q Consensus 56 eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el 113 (535)
++..+.........++..+...+..-...-...+......+.++..+...+=+-+++.
T Consensus 33 ~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~M 90 (135)
T 2e7s_A 33 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNL 90 (135)
T ss_dssp HHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445455555544444455555555556666666555544444433
No 63
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=64.94 E-value=54 Score=28.05 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=29.7
Q ss_pred hhhHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 048095 12 NLKLQCKERQL----RFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGEL 71 (535)
Q Consensus 12 ~~KL~~te~dL----erved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eI 71 (535)
|.+||--++.| +-+.|.+.+.+..+..++..+.+...++..+......++.++..+++.|
T Consensus 18 nAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 18 NAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454444433 2355555555555555555555555555555444444444444444444
No 64
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=64.08 E-value=54 Score=27.37 Aligned_cols=79 Identities=13% Similarity=0.064 Sum_probs=39.1
Q ss_pred chhhhhhhHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 048095 7 EIRGFNLKLQC-KERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEI 85 (535)
Q Consensus 7 ~~~~~~~KL~~-te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eI 85 (535)
++++||..|.. +..++.++.+....+.+..-+-.=+... ..+...|+.+...+..+++.+..+...+..++..+....
T Consensus 7 sVreLN~~L~gls~eev~~lKq~RRtlKNRgyAq~CR~Kr-~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 7 SVRELNRHLRGFTKDEVIRLKQKRRTLKNRGYAQSCRYKR-VQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp CHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888732 2334444444444443333332222222 234455555555555555555555555555555554444
Q ss_pred H
Q 048095 86 E 86 (535)
Q Consensus 86 e 86 (535)
+
T Consensus 86 ~ 86 (90)
T 2wt7_B 86 E 86 (90)
T ss_dssp H
T ss_pred H
Confidence 3
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=63.44 E-value=60 Score=33.95 Aligned_cols=46 Identities=15% Similarity=0.072 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 048095 72 QSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQ 117 (535)
Q Consensus 72 e~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~ 117 (535)
...+.+.+......+..+.+.....++-.++++.+.++...++.+.
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
T 3oja_A 424 VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASAN 469 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcc
Confidence 3333333333444444444444444444444444444444444444
No 66
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=62.73 E-value=1.7e+02 Score=31.39 Aligned_cols=7 Identities=29% Similarity=1.042 Sum_probs=3.2
Q ss_pred hHHHHHH
Q 048095 438 SLEVLGF 444 (535)
Q Consensus 438 ~lea~gF 444 (535)
|+.++||
T Consensus 573 PLGIlGi 579 (602)
T 1cii_A 573 ALGIIGY 579 (602)
T ss_dssp CCHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 67
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=58.48 E-value=1.1e+02 Score=27.89 Aligned_cols=48 Identities=23% Similarity=0.107 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 048095 70 ELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELECKQ 117 (535)
Q Consensus 70 eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~~k~ 117 (535)
.|..++.++..++.+|.+++.++..+...+..+++.+..+.-++...+
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE 116 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQ 116 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444443333
No 68
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=58.44 E-value=63 Score=26.36 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 048095 47 NSELWCKEKELGLVQKRIRG 66 (535)
Q Consensus 47 k~EL~~LE~eLeeLK~eIeE 66 (535)
+..+..++.++..++..+..
T Consensus 34 q~~i~~lE~el~~~r~e~~~ 53 (86)
T 1x8y_A 34 RRLLAEKEREMAEMRARMQQ 53 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444433333333
No 69
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=58.32 E-value=1.7e+02 Score=30.60 Aligned_cols=15 Identities=20% Similarity=0.184 Sum_probs=6.2
Q ss_pred HHHHHHhHHHHHHHH
Q 048095 25 LEKRIGESKGELALV 39 (535)
Q Consensus 25 ved~i~ElEkqle~L 39 (535)
|...+.+++..++.+
T Consensus 36 V~~~l~~LE~~l~el 50 (409)
T 1m1j_C 36 TDGELLEIEGLLQQA 50 (409)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHH
Confidence 334444444444433
No 70
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=58.26 E-value=2e+02 Score=31.00 Aligned_cols=37 Identities=11% Similarity=0.049 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 21 QLRFLEKRIGESKGELALVQKEIEECNSELWCKEKEL 57 (535)
Q Consensus 21 dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eL 57 (535)
.|......++.|.+--......|+....++......+
T Consensus 10 ~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i 46 (497)
T 3iox_A 10 KLTAYQTELARVQKANADAKAAYEAAVAANNAANAAL 46 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3444444444444444445555555555555544443
No 71
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=56.62 E-value=87 Score=26.15 Aligned_cols=11 Identities=27% Similarity=0.151 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 048095 45 ECNSELWCKEK 55 (535)
Q Consensus 45 Elk~EL~~LE~ 55 (535)
.+..++.+.+.
T Consensus 31 ~l~~~~~e~~~ 41 (117)
T 2zqm_A 31 KVQLELTEAKK 41 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 72
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=56.31 E-value=1.1e+02 Score=27.43 Aligned_cols=91 Identities=15% Similarity=0.155 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 14 KLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQ 93 (535)
Q Consensus 14 KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~ 93 (535)
++.-++.+|++.+..+......+.......++...-...++..-..-...|..+..++...............+....+.
T Consensus 4 ri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~ 83 (147)
T 2b9c_A 4 RIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLV 83 (147)
T ss_dssp -------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444555555555555555555555444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHH
Q 048095 94 SKEIELGLLQK 104 (535)
Q Consensus 94 ~~eeEL~~lqk 104 (535)
..+..|.....
T Consensus 84 ~~E~dLeraee 94 (147)
T 2b9c_A 84 IIESDLERAEE 94 (147)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444443333
No 73
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=56.19 E-value=92 Score=26.33 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=10.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 048095 26 EKRIGESKGELALVQKEIEECNSELWC 52 (535)
Q Consensus 26 ed~i~ElEkqle~Laek~~Elk~EL~~ 52 (535)
+|.|.|+-..+=.+..+...+...+-.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~ri~~aig~ 31 (114)
T 2xzr_A 5 EDKIEEILSKIYHIENEIARIKKLIGA 31 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHhh
Confidence 333444333333333333333333333
No 74
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=53.59 E-value=2.1e+02 Score=30.08 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=13.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 25 LEKRIGESKGELALVQKEIEECNSELWCKEKEL 57 (535)
Q Consensus 25 ved~i~ElEkqle~Laek~~Elk~EL~~LE~eL 57 (535)
|...|.+++..++.+.+.-.+...-+..+...+
T Consensus 36 V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~ 68 (411)
T 3ghg_C 36 VDKDLQSLEDILHQVENKTSEVKQLIKAIQLTY 68 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 344444444444444443333333333334433
No 75
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=52.05 E-value=93 Score=25.17 Aligned_cols=60 Identities=15% Similarity=0.000 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 39 VQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIE 98 (535)
Q Consensus 39 Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeE 98 (535)
|-.++.++..--..+..--..+-.+++++..+.+..+.++.....-....+..+...+.+
T Consensus 14 Li~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeE 73 (77)
T 2w83_C 14 LILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344444444444444444444444444444444444333333
No 76
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=51.20 E-value=1e+02 Score=25.32 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 048095 40 QKEIEECNSELWCKEKEL 57 (535)
Q Consensus 40 aek~~Elk~EL~~LE~eL 57 (535)
+.++..+..++..++.++
T Consensus 14 q~~~~~l~~q~~~l~~~~ 31 (107)
T 1fxk_A 14 QQQAQAISVQKQTVEMQI 31 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 77
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=51.18 E-value=94 Score=32.24 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 048095 51 WCKEKELGLVQKRIRGCNGELQSKQGELALVEKE 84 (535)
Q Consensus 51 ~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~e 84 (535)
..++.+|.+.+..+...+.+-..+...+-.+...
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (471)
T 3mq9_A 400 HLLQQELTEAQKGFQDVEAQAATANHTVMALMAS 433 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHH
Confidence 3344444444444444444444444444444333
No 78
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=49.61 E-value=95 Score=25.26 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 048095 57 LGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELE 114 (535)
Q Consensus 57 LeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~ 114 (535)
++++...-.+++..++..+..++....+-+..+.++..+-+.|+..-..++++...|.
T Consensus 15 lq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLa 72 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLA 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444445555555555554445555444443
No 79
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=49.04 E-value=1.3e+02 Score=26.30 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=5.7
Q ss_pred HHHhHHHHHHHHHHHH
Q 048095 64 IRGCNGELQSKQGELA 79 (535)
Q Consensus 64 IeE~e~eIe~~qkeIe 79 (535)
|..+++.|..++.++.
T Consensus 42 v~ql~~~i~~Le~eL~ 57 (120)
T 3i00_A 42 VLQLKGHVSELEADLA 57 (120)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 80
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=47.44 E-value=2.1e+02 Score=30.45 Aligned_cols=51 Identities=6% Similarity=-0.024 Sum_probs=30.1
Q ss_pred chhhhhhhH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 7 EIRGFNLKL-QCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKEL 57 (535)
Q Consensus 7 ~~~~~~~KL-~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eL 57 (535)
.|.+|-.|- ..++.+|..+++.+.+|...-.+..+-+..++.-+...+...
T Consensus 81 glad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~ 132 (461)
T 3ghg_B 81 QLQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQV 132 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCC
Confidence 355554433 346677777777777776666666555555555555555544
No 81
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.61 E-value=1.8e+02 Score=26.53 Aligned_cols=89 Identities=21% Similarity=0.268 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 14 KLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQ 93 (535)
Q Consensus 14 KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~ 93 (535)
||=..=+.-..++|.+.....++.....++..+.. ++.++..+..++.....++..+...+.+-...+.
T Consensus 7 KLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~-----------~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~ 75 (154)
T 2ocy_A 7 QLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQ-----------LKEDYNTLKRELSDRDDEVKRLREDIAKENELRT 75 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH-----------HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 34333344444555555555555555443333221 1222222233333344444444444444444444
Q ss_pred HHHHHHHHHHHHHhhhhhhH
Q 048095 94 SKEIELGLLQKRVGECNCEL 113 (535)
Q Consensus 94 ~~eeEL~~lqk~l~E~~~el 113 (535)
..+.....+...+.++..-|
T Consensus 76 ~aE~~~~~ie~ElEeLTasL 95 (154)
T 2ocy_A 76 KAEEEADKLNKEVEDLTASL 95 (154)
T ss_dssp HHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333
No 82
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=45.00 E-value=1e+02 Score=24.48 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=19.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHHH
Q 048095 10 GFNLKLQCKERQLRFLEKRIGESKGELAL 38 (535)
Q Consensus 10 ~~~~KL~~te~dLerved~i~ElEkqle~ 38 (535)
+.+.+|+....+++|++-++..+...+..
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiK 35 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEK 35 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777766666543
No 83
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=43.34 E-value=2.4e+02 Score=27.39 Aligned_cols=63 Identities=13% Similarity=0.157 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 40 QKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQ------GELALVEKEIEESNSELQSKEIELGLL 102 (535)
Q Consensus 40 aek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~q------keIe~le~eIee~e~El~~~eeEL~~l 102 (535)
-+.|+-.-+.+...|..++-.+..=..+..+|..+. ..+..+++++..++.+....+.+|..+
T Consensus 89 ~d~yR~~LK~IR~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~ 157 (234)
T 3plt_A 89 YDQYRVTLKSIRNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQLSNI 157 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 444555555566666666555555445555554443 234444444444444444444444433
No 84
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=42.24 E-value=1.6e+02 Score=25.05 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 048095 17 CKERQLRFLEKRIGESKGELALVQKEIEE 45 (535)
Q Consensus 17 ~te~dLerved~i~ElEkqle~Laek~~E 45 (535)
++...|.-....-.+++.....|..++.+
T Consensus 12 E~~KqL~~~~q~~~e~e~~k~eL~~~~~~ 40 (107)
T 2no2_A 12 EVTKQVSMARQAQVDLEREKKELEDSLER 40 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 85
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=41.92 E-value=1.6e+02 Score=25.02 Aligned_cols=73 Identities=16% Similarity=0.125 Sum_probs=33.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 29 IGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQK 104 (535)
Q Consensus 29 i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk 104 (535)
.+|+.+++...+.--.+.......|+.++..++ .+...+.......++.+..+|.....++......++..+.
T Consensus 10 ~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~---~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~ 82 (107)
T 2no2_A 10 NAEVTKQVSMARQAQVDLEREKKELEDSLERIS---DQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQ 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555554 1122223333344444444444444444444444444443
No 86
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=41.05 E-value=1.8e+02 Score=25.16 Aligned_cols=51 Identities=6% Similarity=0.139 Sum_probs=22.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048095 59 LVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGEC 109 (535)
Q Consensus 59 eLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~ 109 (535)
.++.++..+...-..+...|..++..=++++..-+....-|..+...+|..
T Consensus 39 ~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~a 89 (111)
T 2v66_B 39 VLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQA 89 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444433
No 87
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=40.87 E-value=1.4e+02 Score=23.89 Aligned_cols=58 Identities=21% Similarity=0.127 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 048095 57 LGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCELE 114 (535)
Q Consensus 57 LeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el~ 114 (535)
++++...-.++++.++..+..++....+-...+.++..+-+.|+..-..++++...|.
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~La 66 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLA 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444455555555555554445555444443
No 88
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=40.12 E-value=1.8e+02 Score=25.10 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 048095 74 KQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCEL 113 (535)
Q Consensus 74 ~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el 113 (535)
...++..+...+...+..+..+.......+..+.+...+|
T Consensus 43 ~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~L 82 (112)
T 1x79_B 43 SSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVL 82 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444
No 89
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=39.86 E-value=56 Score=34.07 Aligned_cols=58 Identities=7% Similarity=0.160 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 49 ELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRV 106 (535)
Q Consensus 49 EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l 106 (535)
++..++.++..++++..+++..+..++.++..+...+...+..++.+..++..++..+
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 4455566666666666666666666666666666777777777777777777776543
No 90
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=39.79 E-value=1.4e+02 Score=23.90 Aligned_cols=38 Identities=24% Similarity=0.156 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048095 71 LQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGE 108 (535)
Q Consensus 71 Ie~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E 108 (535)
+..++.++...+.+|..++..+....+...++++.+.+
T Consensus 20 l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiis 57 (75)
T 3a7o_A 20 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELIS 57 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHH
Confidence 33444444444444444444444444444444444433
No 91
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=37.84 E-value=1.7e+02 Score=24.22 Aligned_cols=19 Identities=21% Similarity=0.294 Sum_probs=9.9
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 048095 11 FNLKLQCKERQLRFLEKRI 29 (535)
Q Consensus 11 ~~~KL~~te~dLerved~i 29 (535)
|+.=-+++...|.++...+
T Consensus 8 F~~V~~D~~~ql~~l~~~~ 26 (95)
T 2c5k_T 8 FQQVVKDTKEQLNRINNYI 26 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333445555555555554
No 92
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=36.98 E-value=1.2e+02 Score=22.63 Aligned_cols=41 Identities=7% Similarity=0.080 Sum_probs=23.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 26 EKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRG 66 (535)
Q Consensus 26 ed~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE 66 (535)
++.+.++..++..|..+-..+...+.....+|..++.+++.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666655555555555555554443
No 93
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=36.61 E-value=3.2e+02 Score=29.21 Aligned_cols=29 Identities=14% Similarity=-0.021 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048095 81 VEKEIEESNSELQSKEIELGLLQKRVGEC 109 (535)
Q Consensus 81 le~eIee~e~El~~~eeEL~~lqk~l~E~ 109 (535)
+..+...+..++..++.++..++..++++
T Consensus 76 l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 76 LIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444333
No 94
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=36.58 E-value=3.5e+02 Score=28.98 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 81 VEKEIEESNSELQSKEIELGLLQKR 105 (535)
Q Consensus 81 le~eIee~e~El~~~eeEL~~lqk~ 105 (535)
+..+...+..++..++.++..++..
T Consensus 121 l~~~~~~l~~~i~~l~~~~~~~~~~ 145 (501)
T 1wle_A 121 LRARGREIRKQLTLLYPKEAQLEEQ 145 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444433333
No 95
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=35.61 E-value=2.4e+02 Score=25.14 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=38.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 27 KRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEI 97 (535)
Q Consensus 27 d~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~ee 97 (535)
+.|++++...++++...++.+.++.-.-+-|.+-+...++++..-...+++|..+.++...++..+.....
T Consensus 11 ~~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~ 81 (167)
T 4gkw_A 11 DEVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQ 81 (167)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34556666666666666666666655555555555555555555444555554444444444444333333
No 96
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=35.61 E-value=2e+02 Score=30.06 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhccc
Q 048095 418 DEAMKMAGEWKKKMGV 433 (535)
Q Consensus 418 eeA~~lA~~WK~~i~~ 433 (535)
++...++..|=..++.
T Consensus 296 ~e~~~~~~~il~~LGL 311 (421)
T 1ses_A 296 QELLENAEEILRLLEL 311 (421)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCC
Confidence 3455555555555543
No 97
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=35.07 E-value=2.3e+02 Score=24.73 Aligned_cols=33 Identities=6% Similarity=0.140 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 048095 14 KLQCKERQLRFLEKRIGESKGELALVQKEIEEC 46 (535)
Q Consensus 14 KL~~te~dLerved~i~ElEkqle~Laek~~El 46 (535)
+|-++...|.+.+......+....+|...+.+-
T Consensus 33 qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~e 65 (121)
T 3mq7_A 33 ELTEAQKGFQDVEAQAATANHTVMALMASLDAE 65 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443333
No 98
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=34.92 E-value=1.8e+02 Score=23.55 Aligned_cols=17 Identities=6% Similarity=0.182 Sum_probs=6.2
Q ss_pred HHHHHhHHHHHHHHHHH
Q 048095 62 KRIRGCNGELQSKQGEL 78 (535)
Q Consensus 62 ~eIeE~e~eIe~~qkeI 78 (535)
..|..++.++.....++
T Consensus 35 ~~i~~lE~el~~~r~e~ 51 (86)
T 1x8y_A 35 RLLAEKEREMAEMRARM 51 (86)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 99
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=34.40 E-value=1.4e+02 Score=22.27 Aligned_cols=16 Identities=0% Similarity=0.104 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 048095 84 EIEESNSELQSKEIEL 99 (535)
Q Consensus 84 eIee~e~El~~~eeEL 99 (535)
.+...+.+-.....+|
T Consensus 33 ~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 33 DAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3334444444444443
No 100
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=34.03 E-value=1e+02 Score=32.07 Aligned_cols=34 Identities=9% Similarity=0.221 Sum_probs=13.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 66 GCNGELQSKQGELALVEKEIEESNSELQSKEIEL 99 (535)
Q Consensus 66 E~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL 99 (535)
.++.++..++.+...++..|.+++.++......+
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 40 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEIL 40 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444333333333
No 101
>2rlw_A PLNF; toxin; NMR {Lactobacillus plantarum}
Probab=33.99 E-value=6.7 Score=26.17 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=19.0
Q ss_pred HHHHhhhCCCchhHHHHHhcccCC
Q 048095 356 ISQTLTKACDPALLVLDAMQGFYP 379 (535)
Q Consensus 356 v~~AL~~A~DPAkLVLdai~~f~~ 379 (535)
+....+.|.-||..|+.|+.||+.
T Consensus 10 vrnnyksavgpadwvisavrgfih 33 (34)
T 2rlw_A 10 VRNNYKSAVGPADWVISAVRGFIH 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhccccccChHHHHHHHHHhhcc
Confidence 334556778899999999999964
No 102
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=33.37 E-value=2e+02 Score=23.47 Aligned_cols=13 Identities=8% Similarity=0.299 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 048095 76 GELALVEKEIEES 88 (535)
Q Consensus 76 keIe~le~eIee~ 88 (535)
..++...-+++.+
T Consensus 41 GqiE~~~~~l~ql 53 (83)
T 2xdj_A 41 GQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3333333333333
No 103
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=33.37 E-value=2e+02 Score=23.47 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 048095 56 ELGLVQKRIRGCNGELQSKQGELALVEKEIEE 87 (535)
Q Consensus 56 eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee 87 (535)
.++.++.+|..+.|.++....+++.+...-.+
T Consensus 28 Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 28 QLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443333
No 104
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=33.34 E-value=1.3e+02 Score=23.03 Aligned_cols=32 Identities=13% Similarity=0.028 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 048095 50 LWCKEKELGLVQKRIRGCNGELQSKQGELALV 81 (535)
Q Consensus 50 L~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~l 81 (535)
...++.....+..+..++..+++.++.++..+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444333
No 105
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=33.07 E-value=2.2e+02 Score=24.01 Aligned_cols=72 Identities=24% Similarity=0.348 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 048095 42 EIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKRVGECNCEL 113 (535)
Q Consensus 42 k~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~l~E~~~el 113 (535)
+++++-.-+..++-....++.-|..+.+.+.+-...|..--..|...-..+++-..+++.+|.++++-..|+
T Consensus 7 ~~~~~~~~~~~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEM 78 (114)
T 2xzr_A 7 KIEEILSKIYHIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEM 78 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444433333333333334444444444444444443333
No 106
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=32.80 E-value=2.7e+02 Score=29.79 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 048095 87 ESNSELQSKEIELGLLQKRVGECNCEL 113 (535)
Q Consensus 87 e~e~El~~~eeEL~~lqk~l~E~~~el 113 (535)
.+..+...+..++..+...+.++..++
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333333
No 107
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=32.68 E-value=2.3e+02 Score=24.17 Aligned_cols=42 Identities=5% Similarity=0.066 Sum_probs=18.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 61 QKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLL 102 (535)
Q Consensus 61 K~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~l 102 (535)
..-+.-++.++..++..+..+...+...+..+......|+.+
T Consensus 87 ~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 87 EDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444433
No 108
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=32.65 E-value=2e+02 Score=23.33 Aligned_cols=64 Identities=13% Similarity=0.176 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 048095 9 RGFNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQ 72 (535)
Q Consensus 9 ~~~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe 72 (535)
+.+..++.+..++|+.+..--.|+..=-..|..=+.++..+-..++..++-++....++...++
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l~ 77 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSALE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 109
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=31.54 E-value=4.1e+02 Score=28.30 Aligned_cols=36 Identities=6% Similarity=0.055 Sum_probs=17.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 25 LEKRIGESKGELALVQKEIEECNSELWCKEKELGLV 60 (535)
Q Consensus 25 ved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeL 60 (535)
|...|.+++..++.+.+.-.+...-+..+...+..-
T Consensus 93 V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~ 128 (461)
T 3ghg_B 93 IRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKR 128 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccc
Confidence 455555555555555444444444444444444333
No 110
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=30.78 E-value=3.8e+02 Score=26.07 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 76 GELALVEKEIEESNSELQSKEIELGLLQK 104 (535)
Q Consensus 76 keIe~le~eIee~e~El~~~eeEL~~lqk 104 (535)
.+|..+..+|+.++..+.....+|..+++
T Consensus 177 sEI~EID~KI~~L~~mR~~vl~RLA~lEq 205 (242)
T 3uux_B 177 SEIRDIEVEVENLRQKKEKLLGKIANIEQ 205 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333333333333333333333
No 111
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=30.72 E-value=2.3e+02 Score=23.40 Aligned_cols=27 Identities=11% Similarity=0.143 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 048095 20 RQLRFLEKRIGESKGELALVQKEIEEC 46 (535)
Q Consensus 20 ~dLerved~i~ElEkqle~Laek~~El 46 (535)
.-|...-|...-++.+-..|..++..+
T Consensus 16 dRlAsyIdKVR~LEqqN~~Le~~i~~l 42 (93)
T 3s4r_A 16 DRFANLIDKVRFLEQQNKILLAELEQL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555554444433
No 112
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=29.36 E-value=2.5e+02 Score=23.41 Aligned_cols=63 Identities=14% Similarity=0.010 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 42 EIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQK 104 (535)
Q Consensus 42 k~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk 104 (535)
.-+++..+-..++.-+..+..+-.+-+..|..++..|...-..|+.-+.-...++.+|....+
T Consensus 19 S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~EklAkldLE~RLsKtEK 81 (101)
T 1d7m_A 19 SREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELEKLARMELEARLAKTEK 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhhhhh
Confidence 334444444444444555555555555555555555555554454444444444444444433
No 113
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=28.86 E-value=2.5e+02 Score=29.56 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=14.3
Q ss_pred CCCCChhHHHHHHHHHHHHHHhccc
Q 048095 409 APDINPQVRDEAMKMAGEWKKKMGV 433 (535)
Q Consensus 409 ~p~i~~~vkeeA~~lA~~WK~~i~~ 433 (535)
.|.-+...-++...++..|=..++.
T Consensus 312 ~pe~s~~~~~e~l~~~~~il~~LGL 336 (455)
T 2dq0_A 312 RPEESWEWHEKIIRNAEELFQELEI 336 (455)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4543444555666666666666654
No 114
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=28.38 E-value=5.8e+02 Score=27.38 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=19.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHH
Q 048095 10 GFNLKLQCKERQLRFLEKRIGESKGELA 37 (535)
Q Consensus 10 ~~~~KL~~te~dLerved~i~ElEkqle 37 (535)
+...+|.+-+.+|.||...=.......+
T Consensus 6 ~yq~~la~yq~elarvqkana~aka~Ye 33 (497)
T 3iox_A 6 DYQAKLTAYQTELARVQKANADAKAAYE 33 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888766555544443
No 115
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=28.33 E-value=1.1e+02 Score=22.05 Aligned_cols=28 Identities=7% Similarity=0.255 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 048095 20 RQLRFLEKRIGESKGELALVQKEIEECN 47 (535)
Q Consensus 20 ~dLerved~i~ElEkqle~Laek~~Elk 47 (535)
+.+++|..+|+-.++++..++.+..++.
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666665555555543
No 116
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=28.13 E-value=2.6e+02 Score=23.27 Aligned_cols=94 Identities=13% Similarity=0.059 Sum_probs=60.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 11 FNLKLQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNS 90 (535)
Q Consensus 11 ~~~KL~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~ 90 (535)
.+.+|...++-|+.-.-...++-+|-+.|..-+..+..+-..-+.-+.+++..|++.-..+..-.-.--.+++.+...+.
T Consensus 2 lan~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~EklAkldLE~RLsKtEK 81 (101)
T 1d7m_A 2 MANRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELEKLARMELEARLAKTEK 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhhhhh
Confidence 35566677777776666666666777777666666666666667777777777776666666555555566666666666
Q ss_pred HHHHHHHHHHHHHH
Q 048095 91 ELQSKEIELGLLQK 104 (535)
Q Consensus 91 El~~~eeEL~~lqk 104 (535)
....++-.|....+
T Consensus 82 DkAiLELkLaE~~D 95 (101)
T 1d7m_A 82 DRAILELKLAEAID 95 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 66555555554443
No 117
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=28.11 E-value=1e+02 Score=28.49 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.2
Q ss_pred cCCCCChhHHHHHHHHHHHHHHhccc
Q 048095 408 IAPDINPQVRDEAMKMAGEWKKKMGV 433 (535)
Q Consensus 408 ~~p~i~~~vkeeA~~lA~~WK~~i~~ 433 (535)
-+|..+|+.|..|.+|-..|-.-|-+
T Consensus 130 k~~~et~~nkrla~~Li~~WsRpI~~ 155 (170)
T 3nfq_A 130 KSKRVEAQLARLAEKLIAEWTRPIIG 155 (170)
T ss_dssp HCTTSCHHHHHHHHHHHHHHTCCCC-
T ss_pred cCCcccHHHHHHHHHHHHHHHHHHhC
Confidence 47889999999999999999777643
No 118
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.91 E-value=1.4e+02 Score=31.10 Aligned_cols=56 Identities=14% Similarity=0.055 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 50 LWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLLQKR 105 (535)
Q Consensus 50 L~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~lqk~ 105 (535)
-..|+.++.+++..+.++...+...+.++..+..++...+..++.+...+..++..
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34566666666666666666666666666666666666666666666666665543
No 119
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=25.82 E-value=3e+02 Score=23.27 Aligned_cols=65 Identities=11% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 40 QKEIEECNSELWCKEKELGLVQKRIRGCNGELQS---------------------KQGELALVEKEIEESNSELQSKEIE 98 (535)
Q Consensus 40 aek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~---------------------~qkeIe~le~eIee~e~El~~~eeE 98 (535)
.+.|..++.++..|+.+-..+++++..++.++.. ...........++.++.+...+...
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~ 90 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGL 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 048095 99 LGLLQK 104 (535)
Q Consensus 99 L~~lqk 104 (535)
+..++.
T Consensus 91 v~~lEe 96 (100)
T 1go4_E 91 LRAMER 96 (100)
T ss_dssp HTTCC-
T ss_pred HHHHhc
No 120
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=25.79 E-value=1.5e+02 Score=28.82 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=7.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhH
Q 048095 10 GFNLKLQCKERQLRFLEKRIGES 32 (535)
Q Consensus 10 ~~~~KL~~te~dLerved~i~El 32 (535)
|+|.+.++++.-++.+++.+.|+
T Consensus 3 ~lnsRvd~~EErIs~le~rleei 25 (233)
T 2yko_A 3 SLRSRCDQLEERVSAAEDEINEI 25 (233)
T ss_dssp ----CHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333333
No 121
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=25.43 E-value=3.3e+02 Score=23.59 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 048095 74 KQGELALVEKEIEE 87 (535)
Q Consensus 74 ~qkeIe~le~eIee 87 (535)
+...+..++.++..
T Consensus 45 l~~~i~~Le~eL~e 58 (120)
T 3i00_A 45 LKGHVSELEADLAE 58 (120)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 122
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=24.23 E-value=2.9e+02 Score=29.61 Aligned_cols=14 Identities=14% Similarity=0.351 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHhc
Q 048095 418 DEAMKMAGEWKKKM 431 (535)
Q Consensus 418 eeA~~lA~~WK~~i 431 (535)
++...++..+=..+
T Consensus 317 e~ml~~~e~il~~L 330 (485)
T 3qne_A 317 DRMIGCSEEFYQSL 330 (485)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
Confidence 33333444443333
No 123
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=24.22 E-value=1e+02 Score=27.67 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=23.1
Q ss_pred cCCCCChhHHHHHHHHHHHHHHhccc
Q 048095 408 IAPDINPQVRDEAMKMAGEWKKKMGV 433 (535)
Q Consensus 408 ~~p~i~~~vkeeA~~lA~~WK~~i~~ 433 (535)
-+|..+|+.|..|..|-..|..-|-+
T Consensus 115 k~~~et~~nk~la~~Li~~WsRpi~~ 140 (145)
T 2xpp_A 115 INPKESKEVRASAKALVQKWTNEVFK 140 (145)
T ss_dssp HCTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCccCHHHHHHHHHHHHHHHHHHhC
Confidence 47899999999999999999987754
No 124
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=23.78 E-value=2.8e+02 Score=29.25 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 83 KEIEESNSELQSKEIELGLLQKRV 106 (535)
Q Consensus 83 ~eIee~e~El~~~eeEL~~lqk~l 106 (535)
.+...+..++..++.++..+...+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 76 AKSREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334433444444333333
No 125
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=23.37 E-value=6.6e+02 Score=26.29 Aligned_cols=100 Identities=14% Similarity=0.108 Sum_probs=52.5
Q ss_pred chhhhhhh-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHH
Q 048095 7 EIRGFNLK-LQCKERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKEL----GLVQKRIRGCNGELQSKQGELALV 81 (535)
Q Consensus 7 ~~~~~~~K-L~~te~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eL----eeLK~eIeE~e~eIe~~qkeIe~l 81 (535)
.|.+|-.| -..++.+|..+++.+.++...-.+..+-+.-++.-+..-+... ..+.+.-..+-.++..++.-|...
T Consensus 24 gl~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~ 103 (411)
T 3ghg_C 24 GIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTH 103 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 35555433 3456788888888888887777776666666655554444333 122222222333334444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 82 EKEIEESNSELQSKEIELGLLQKRV 106 (535)
Q Consensus 82 e~eIee~e~El~~~eeEL~~lqk~l 106 (535)
...|..++..+......|..+...+
T Consensus 104 ~~~i~~l~~~~~~~~~~i~~L~~~v 128 (411)
T 3ghg_C 104 DSSIRYLQEIYNSNNQKIVNLKEKV 128 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554444444444444443
No 126
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=23.23 E-value=3.8e+02 Score=23.49 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHH
Q 048095 13 LKLQCKERQLRFLEKRIGESKGELALV---QKEIEECNSELWCK 53 (535)
Q Consensus 13 ~KL~~te~dLerved~i~ElEkqle~L---aek~~Elk~EL~~L 53 (535)
.+|.+-...+..+...+..+..++..+ ..++.++..-+..+
T Consensus 9 ~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l 52 (151)
T 2zdi_C 9 KELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENL 52 (151)
T ss_dssp THHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555 55555554444443
No 127
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=22.98 E-value=4.5e+02 Score=24.22 Aligned_cols=60 Identities=12% Similarity=0.108 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 048095 19 ERQLRFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGEL 78 (535)
Q Consensus 19 e~dLerved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeI 78 (535)
+.+.+.|...+.++.+++......|+.+-.++.....+++-.+.-|+.-..-+...+.++
T Consensus 9 ~~~ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~ 68 (170)
T 3l4q_C 9 EDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQG 68 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777777777777777776666555555554444444444443
No 128
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=22.62 E-value=3e+02 Score=22.12 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=6.9
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 048095 22 LRFLEKRIGESKGELALV 39 (535)
Q Consensus 22 Lerved~i~ElEkqle~L 39 (535)
|+.+...|..++.++..|
T Consensus 24 le~le~~Ie~LE~~i~~l 41 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEAL 41 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 129
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=21.99 E-value=6.5e+02 Score=25.75 Aligned_cols=132 Identities=16% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----------------
Q 048095 27 KRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNS---------------- 90 (535)
Q Consensus 27 d~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~---------------- 90 (535)
+.+.-+-.++.....+|.+...++..+..++.....+|.-....+++-...+...+.++...+.
T Consensus 119 ~~~e~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~a~~af~~~~~~f~~q~~~~e~~~~~~~~~~~~~~~~~ 198 (373)
T 3hhm_B 119 DNIEAVGKKLHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQTQERYSKEYIEKFKREGNEK 198 (373)
T ss_dssp C--CGGGC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCS
T ss_pred ccHHHHHHHHHHHHHHHHhcccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcChH
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhHHHHHhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhHH
Q 048095 91 ELQSKEIELGLLQKRVGECNCELECKQQQLGLAQSEEDLLKNSLKNSIEHWSQKLNLTKEELSLLQKSIRECKGELDSK 169 (535)
Q Consensus 91 El~~~eeEL~~lqk~l~E~~~el~~k~~~~~~~~~~~~l~~~~~k~~v~~~~~~~~~~~~eL~~~~k~i~e~~~EL~~K 169 (535)
++.........++..+.++..--.-.+..+..+....+ +...+.....=+|..++|.-+....-|..+
T Consensus 199 e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~~~~~lkp~l~ql~k~rd~~~~~L~~~ 266 (373)
T 3hhm_B 199 EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYR-----------EIDKRMNSIKPDLIQLRKTRDQYLMWLTQK 266 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhhccChHHHHHHHHHHHHHHHHHHc
No 130
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=20.81 E-value=5e+02 Score=23.92 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 048095 36 LALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKE 84 (535)
Q Consensus 36 le~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~e 84 (535)
++.+..++.++..++..+..++..+-........+|......++.....
T Consensus 12 ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ 60 (170)
T 3l4q_C 12 VEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNET 60 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444433
No 131
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=20.44 E-value=4e+02 Score=22.72 Aligned_cols=32 Identities=13% Similarity=0.279 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 048095 18 KERQLRFLEKRIGESKGELALVQKEIEECNSE 49 (535)
Q Consensus 18 te~dLerved~i~ElEkqle~Laek~~Elk~E 49 (535)
|-++|..+++.|...+.|+-.-..++..-...
T Consensus 33 tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~ 64 (107)
T 2k48_A 33 TMSTLQELQENITAHEQQLVTARQKLKDAEKA 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777777776665555444333
Done!