Query 048095
Match_columns 535
No_of_seqs 225 out of 263
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 10:30:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048095.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048095hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxka_ a.2.5.1 (A:) Prefoldin 79.0 13 0.00097 29.3 11.9 28 35-62 9-36 (107)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 78.2 14 0.001 29.2 13.2 9 43-51 24-32 (107)
3 d1seta1 a.2.7.1 (A:1-110) Sery 77.1 11 0.00083 29.8 10.8 30 80-109 68-97 (110)
4 d1fxkc_ a.2.5.1 (C:) Prefoldin 72.9 22 0.0016 28.8 14.2 10 33-42 14-23 (133)
5 d1seta1 a.2.7.1 (A:1-110) Sery 59.9 36 0.0026 26.6 12.2 31 27-57 28-58 (110)
6 d1dvpa1 a.118.9.2 (A:1-145) Hr 49.7 28 0.002 28.8 8.2 30 409-438 95-124 (145)
7 d1gqea_ e.38.1.1 (A:) Polypept 48.3 62 0.0045 30.9 11.7 15 329-344 342-356 (362)
8 d2ap3a1 a.24.27.1 (A:12-196) H 42.8 69 0.005 24.8 12.4 87 23-109 98-184 (185)
9 d1fxkc_ a.2.5.1 (C:) Prefoldin 42.7 75 0.0055 25.2 14.1 33 15-47 3-35 (133)
10 d1lrza1 a.2.7.4 (A:245-309) Me 31.7 86 0.0063 22.6 9.4 51 36-86 5-61 (65)
11 d1ivsa1 a.2.7.3 (A:797-862) Va 26.6 81 0.0059 22.2 6.4 21 19-39 3-23 (66)
No 1
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=78.99 E-value=13 Score=29.34 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 35 ELALVQKEIEECNSELWCKEKELGLVQK 62 (535)
Q Consensus 35 qle~Laek~~Elk~EL~~LE~eLeeLK~ 62 (535)
++..++.++..+...+..++.++.+...
T Consensus 9 ~~q~lq~el~~~~~q~~~le~q~~E~~~ 36 (107)
T d1fxka_ 9 QFQQLQQQAQAISVQKQTVEMQINETQK 36 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=78.19 E-value=14 Score=29.18 Aligned_cols=9 Identities=0% Similarity=-0.001 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 048095 43 IEECNSELW 51 (535)
Q Consensus 43 ~~Elk~EL~ 51 (535)
+..+..++.
T Consensus 24 ~~~le~q~~ 32 (107)
T d1fxka_ 24 KQTVEMQIN 32 (107)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 3
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=77.15 E-value=11 Score=29.80 Aligned_cols=30 Identities=13% Similarity=-0.006 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048095 80 LVEKEIEESNSELQSKEIELGLLQKRVGEC 109 (535)
Q Consensus 80 ~le~eIee~e~El~~~eeEL~~lqk~l~E~ 109 (535)
.+..+...+..++..++.++..+...++++
T Consensus 68 ~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 68 ALIARGKALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555544443
No 4
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=72.90 E-value=22 Score=28.75 Aligned_cols=10 Identities=20% Similarity=0.614 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 048095 33 KGELALVQKE 42 (535)
Q Consensus 33 Ekqle~Laek 42 (535)
+.+++.++.+
T Consensus 14 ~~~l~~l~~~ 23 (133)
T d1fxkc_ 14 QSQVELIQQQ 23 (133)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 5
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=59.87 E-value=36 Score=26.58 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=14.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 27 KRIGESKGELALVQKEIEECNSELWCKEKEL 57 (535)
Q Consensus 27 d~i~ElEkqle~Laek~~Elk~EL~~LE~eL 57 (535)
|.+-++..+...+..+++.++.+...+.+++
T Consensus 28 d~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i 58 (110)
T d1seta1 28 EALLALDREVQELKKRLQEVQTERNQVAKRV 58 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444
No 6
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=49.67 E-value=28 Score=28.82 Aligned_cols=30 Identities=10% Similarity=0.265 Sum_probs=24.1
Q ss_pred CCCCChhHHHHHHHHHHHHHHhccccCCCh
Q 048095 409 APDINPQVRDEAMKMAGEWKKKMGVIGENS 438 (535)
Q Consensus 409 ~p~i~~~vkeeA~~lA~~WK~~i~~~~~~~ 438 (535)
++..++.|++++..+-..|-.....+.+.+
T Consensus 95 ~~~~~~~Vk~kil~li~~W~~~f~~~~~~~ 124 (145)
T d1dvpa1 95 ESTPHENVRQKMLELVQTWAYAFRSSDKYQ 124 (145)
T ss_dssp HHCSCHHHHHHHHHHHHHHHHHTTTCSSCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCccch
Confidence 445688999999999999999987655433
No 7
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=48.27 E-value=62 Score=30.87 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=7.6
Q ss_pred HhhhCChHHHHHHHHH
Q 048095 329 LQSMNNGRSLQLILNQ 344 (535)
Q Consensus 329 lC~~MD~~gL~~fv~~ 344 (535)
+-.-|||. |-.||..
T Consensus 342 ~~~vl~G~-ld~~i~a 356 (362)
T d1gqea_ 342 TQAVLDGS-LDQFIEA 356 (362)
T ss_dssp HHHHHTTC-CHHHHHH
T ss_pred hhHHhCCC-HHHHHHH
Confidence 44455663 5555543
No 8
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=42.80 E-value=69 Score=24.79 Aligned_cols=87 Identities=10% Similarity=-0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048095 23 RFLEKRIGESKGELALVQKEIEECNSELWCKEKELGLVQKRIRGCNGELQSKQGELALVEKEIEESNSELQSKEIELGLL 102 (535)
Q Consensus 23 erved~i~ElEkqle~Laek~~Elk~EL~~LE~eLeeLK~eIeE~e~eIe~~qkeIe~le~eIee~e~El~~~eeEL~~l 102 (535)
................+...+..+...+.........+...+......+..+...+..+...+..+..........+..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 177 (185)
T d2ap3a1 98 DVKRKEVKQLDDVLKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKV 177 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhh
Q 048095 103 QKRVGEC 109 (535)
Q Consensus 103 qk~l~E~ 109 (535)
.+...++
T Consensus 178 ~~ek~~l 184 (185)
T d2ap3a1 178 QKEKQDV 184 (185)
T ss_dssp HHHHHHH
T ss_pred HHHhhhc
No 9
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=42.69 E-value=75 Score=25.18 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 048095 15 LQCKERQLRFLEKRIGESKGELALVQKEIEECN 47 (535)
Q Consensus 15 L~~te~dLerved~i~ElEkqle~Laek~~Elk 47 (535)
|++....++-++..+..+..++..+...+.++.
T Consensus 3 L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~ 35 (133)
T d1fxkc_ 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELE 35 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555544444443
No 10
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=31.71 E-value=86 Score=22.63 Aligned_cols=51 Identities=12% Similarity=0.134 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 048095 36 LALVQKEIEECNSELWCKEKEL------GLVQKRIRGCNGELQSKQGELALVEKEIE 86 (535)
Q Consensus 36 le~Laek~~Elk~EL~~LE~eL------eeLK~eIeE~e~eIe~~qkeIe~le~eIe 86 (535)
+..|..++..+..+|..++..| ...+++..++..++.+.+..|..+..-|.
T Consensus 5 l~~L~~~~~~L~~~i~k~~~~leknP~skK~~nk~~el~~Q~~s~~~ki~Ea~~li~ 61 (65)
T d1lrza1 5 IKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGKRLQE 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666 33355666666666666666655555444
No 11
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=26.60 E-value=81 Score=22.24 Aligned_cols=21 Identities=29% Similarity=0.080 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 048095 19 ERQLRFLEKRIGESKGELALV 39 (535)
Q Consensus 19 e~dLerved~i~ElEkqle~L 39 (535)
+.++.|+...+..+++++..+
T Consensus 3 ~~E~~RL~K~l~kl~~~i~~~ 23 (66)
T d1ivsa1 3 EEWRRRQEKRLKELLALAERS 23 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555444
Done!