Query 048096
Match_columns 530
No_of_seqs 183 out of 396
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 10:31:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048096.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048096hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.5 3.1E-14 1.1E-18 147.0 13.2 297 173-499 20-383 (408)
2 3zy2_A Putative GDP-fucose pro 99.2 6.6E-11 2.3E-15 122.0 14.8 271 173-496 6-348 (362)
3 2hhc_A NODZ, nodulation fucosy 97.8 0.0001 3.5E-09 73.5 12.1 260 174-489 3-294 (330)
4 2de0_X Alpha-(1,6)-fucosyltran 97.7 0.0018 6.1E-08 70.0 19.6 253 174-495 144-420 (526)
5 3l32_A Phosphoprotein; antipar 34.4 18 0.00061 27.3 1.8 26 313-338 2-27 (45)
6 1l2m_A REP protein; A+B fold, 20.0 97 0.0033 27.4 4.1 29 393-422 17-45 (118)
7 2g7j_A Putative cytoplasmic pr 16.4 52 0.0018 29.2 1.5 26 396-425 3-28 (124)
8 2x4k_A 4-oxalocrotonate tautom 16.3 1.8E+02 0.0061 20.7 4.3 29 177-205 5-36 (63)
9 2fr5_A Cytidine deaminase; tet 15.0 1.2E+02 0.004 27.5 3.5 97 338-446 38-142 (146)
10 1wgl_A TOLL-interacting protei 12.3 35 0.0012 26.6 -0.7 49 427-480 10-58 (59)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.54 E-value=3.1e-14 Score=147.04 Aligned_cols=297 Identities=14% Similarity=0.202 Sum_probs=168.4
Q ss_pred cCCcEEEEEE-cC-chhHHHHHHHHHHHHHHHhcCe----EeccccccccccCC------CCCCCcccchHHHHHhcccc
Q 048096 173 EKRKFLVVVA-SG-GLNQQRNQIVDAVVIARILEAA----LVVPVLQVNLIWGD------ESEFSDIFNVKHFKRTLQAD 240 (530)
Q Consensus 173 ~snGYL~V~~-nG-GLNQqR~~IcDaVaVARiLNAT----LVlP~L~~~s~W~D------~S~F~DIFD~dhFI~sL~~d 240 (530)
..++||+-.. .| |.|.||...-.|.++|+.||.| ||||-...-.=|.. .-+|++.||++++. ..
T Consensus 20 ~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L~----~~ 95 (408)
T 4ap5_A 20 SRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLN----KN 95 (408)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHHH----TT
T ss_pred cccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHHH----hh
Confidence 5789999975 45 8999999999999999999999 99996643222432 24799999998743 34
Q ss_pred eEEec------cCChhh----------hc-------cccc----cccC-------CCCCCCchhHHH-------------
Q 048096 241 VRVVS------SLPSTH----------LM-------SRQS----IENQ-------LPYNISPFWIRA------------- 273 (530)
Q Consensus 241 VrIVk------~LP~~~----------~~-------~~~~----~~~~-------vp~~~sp~~y~~------------- 273 (530)
|+|+. ++-..+ .. ..+. .... .-+...|.|-..
T Consensus 96 vpVI~meeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c~~~~ 175 (408)
T 4ap5_A 96 IPVIEYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLSVQ 175 (408)
T ss_dssp SCEEEHHHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEEEEEC
T ss_pred CCeeEHHHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCceeEEEe
Confidence 44441 110000 00 0000 0000 000012233111
Q ss_pred ----HhHHhhhhcc---eEEEeccCccccCCCC-chhhhhhhhhcccccccchhHHHHHHHHHHHHHhcCCeEEEeecch
Q 048096 274 ----RFFKQLNEEG---VLVLKGLDTKLSKNLP-PDLQKLRCKVAFHALRFAAPIQELGNRLARRMWIEGPYIALHLRME 345 (530)
Q Consensus 274 ----~vlP~L~k~~---VI~l~~~d~RLa~~lP-~diQrLRCrvnF~ALrF~p~I~~lg~~LV~RmR~~GpyIALHLR~E 345 (530)
.+.|.+.+.. -+-+..+...|++... .+...+| ..|+|++.|.+.|++.++..- .++|+++|+|.+
T Consensus 176 ~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L-~~~~~~~h~r~~ 249 (408)
T 4ap5_A 176 GSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHL-NSTDDADRIPFQ 249 (408)
T ss_dssp SBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHH-CCCTTTTTCCCC
T ss_pred ecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHh-Ccccceeecccc
Confidence 1123332221 1122222233332211 2222322 479999999999999888765 468999999999
Q ss_pred hhhHhhhcccCCCChhHHHHHHHHHhhccccccCcccCChHhHhhcCCCCCCHHHHHHHHHhcCCCCCceEEEeecccCC
Q 048096 346 KDVWVRTGCLTGLGLEYDEIIAKIRESQPEYLTGKLNMSHIQRRLAGLCPLTASEIARFLKALGAPSSARIYIAGGEPFG 425 (530)
Q Consensus 346 kDMlAfsgC~~g~~~~e~~el~~~R~~~~~~~~~~~~i~~~~rR~~G~CPLTPeEvgl~L~ALGf~~~T~IYlAaGeiyG 425 (530)
.|+... |.......-. . +.--|+..++... -....||-.++-+..+.+.|.=-+-+.||||+-+
T Consensus 250 ~dw~~~--~~~~~~~~~~----~--y~~~H~Rr~d~~~-----~~~~~~ps~~~~~~~i~~~~~~~~~~~VyiATD~--- 313 (408)
T 4ap5_A 250 EDWMKM--KVKLGSALGG----P--YLGVHLRRKDFIW-----GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDA--- 313 (408)
T ss_dssp SSGGGC--CCCTTCBCCE----E--EEEEEECCTTTTT-----TTCSSSCCHHHHHHHHHHHHHHHTCSCEEEEECC---
T ss_pred hhHhhh--hcccccccCC----C--ccccccccccchh-----hhhccCCCHHHHHHHHHHHHHhcCCCEEEEeCCC---
Confidence 888654 4332110000 0 0000111111100 0112233333333333333322234589999876
Q ss_pred ccccchhHHhhCCCcccccccCCccccccccccccccchhheeeecCCceeecCCCCchhhhhhhcccccCCCc
Q 048096 426 GHQALQPLAAEFPNLVTKEMLAQEGELSPYVNRSSSLAAIDYIVSLNSNVFVPSHGGNMGRAMQGHRAYVGHRK 499 (530)
Q Consensus 426 g~~~L~pL~~~FPnl~tKetLas~eEL~pF~~~ss~~AALDYiVcl~SDVFV~t~~GNfa~~V~GhR~y~G~~k 499 (530)
.+..+..|++.+|.++.-.. ..+++..+ .....|.||-+||.+||+||+|..++|+..|.=.|.+.|+..
T Consensus 314 ~~~~~~~l~~~~~~~~~~~~--~~~~~~~~--~d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~~ 383 (408)
T 4ap5_A 314 VRKEYEELKKLLPEMVRFEP--TWEELELY--KDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDP 383 (408)
T ss_dssp CHHHHHHHHHHCTTEECCCC--CHHHHHHH--HHHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBCG
T ss_pred chhHHHHHHHhCCCcEEecC--cchhhhcc--CcchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCCC
Confidence 34557789999987653221 12333333 234578999999999999999999999999999999999864
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.24 E-value=6.6e-11 Score=122.02 Aligned_cols=271 Identities=17% Similarity=0.278 Sum_probs=162.3
Q ss_pred cCCcEEEE-EEcCchhHHHHHHHHHHHHHHHhcCeEeccccccccccC-CCCCCCcccchHHHHHhcccceEEec--c--
Q 048096 173 EKRKFLVV-VASGGLNQQRNQIVDAVVIARILEAALVVPVLQVNLIWG-DESEFSDIFNVKHFKRTLQADVRVVS--S-- 246 (530)
Q Consensus 173 ~snGYL~V-~~nGGLNQqR~~IcDaVaVARiLNATLVlP~L~~~s~W~-D~S~F~DIFD~dhFI~sL~~dVrIVk--~-- 246 (530)
.+||||+- .|-|-..||-....-+.+.|+.||.|||||-+-.-..-+ ---.|++-|+++.- +..-|||. +
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~~~~~~vpf~~yF~v~~l----~~yhrvi~me~Fm 81 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKHPETKMIPFEFLFQVGTV----AKYTRVVTMQEFT 81 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSSSSCEEECHHHHBCHHHH----TTTSCEECHHHHH
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccCCcccccchhheeecchh----hhhceeeeHHHHH
Confidence 46999999 699999999999999999999999999999854222111 11358888887652 22233332 1
Q ss_pred -------CChhhh-----c-c--------ccccc-c------------CCCCCC----Cc-----hh----HHHHhHHhh
Q 048096 247 -------LPSTHL-----M-S--------RQSIE-N------------QLPYNI----SP-----FW----IRARFFKQL 279 (530)
Q Consensus 247 -------LP~~~~-----~-~--------~~~~~-~------------~vp~~~----sp-----~~----y~~~vlP~L 279 (530)
=|.+-. + . ++... + .|.... ++ +| +.++....+
T Consensus 82 ~~lap~~WP~~~R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W~~~~ 161 (362)
T 3zy2_A 82 KKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKWLEKF 161 (362)
T ss_dssp HHTHHHHSCGGGCEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CHHHHS
T ss_pred HHhccccCCcccceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHHHHHhC
Confidence 111100 0 0 00000 0 011100 00 11 122222221
Q ss_pred --hhcceEEEeccCccccCCCC--c---hhhhhhhhhcccccccchhHHHHHHHHHHHHHhcCCeEEEeecchhhhHhhh
Q 048096 280 --NEEGVLVLKGLDTKLSKNLP--P---DLQKLRCKVAFHALRFAAPIQELGNRLARRMWIEGPYIALHLRMEKDVWVRT 352 (530)
Q Consensus 280 --~k~~VI~l~~~d~RLa~~lP--~---diQrLRCrvnF~ALrF~p~I~~lg~~LV~RmR~~GpyIALHLR~EkDMlAfs 352 (530)
.+|-|+.|++.-.. .| . .||| -|+++++|.+.|++.++.--. +||||+|||-=.|+.-.
T Consensus 162 p~~~~pVlAf~gaPa~----FPv~~e~r~Lqk--------Ym~WS~~i~~~a~~fI~~~L~-rpyVgIHLR~G~DW~~a- 227 (362)
T 3zy2_A 162 PSEEYPVLAFSSAPAP----FPSKGKVWSIQK--------YLRWSSRITEQAKKFISANLA-KPFVAVHLRNDADWVRV- 227 (362)
T ss_dssp CTTTCSEEEESSCSSC----SSCCGGGGGGGG--------GCCBCHHHHHHHHHHHHHHCC-SSEEEEEECCCHHHHHH-
T ss_pred CcccCceEeecCCCCC----CCcChhhHhHHH--------hccccHHHHHHHHHHHHHhcC-CCeEEEEEecCCcHHHH-
Confidence 36789888874211 22 1 2443 589999999999999888443 39999999999999776
Q ss_pred cccCCCChhHHHHHHHHHhhccccccCcccCChH---hHhhcC-----CCCCCHHH----HHHHHHhcCCCCCceEEEee
Q 048096 353 GCLTGLGLEYDEIIAKIRESQPEYLTGKLNMSHI---QRRLAG-----LCPLTASE----IARFLKALGAPSSARIYIAG 420 (530)
Q Consensus 353 gC~~g~~~~e~~el~~~R~~~~~~~~~~~~i~~~---~rR~~G-----~CPLTPeE----vgl~L~ALGf~~~T~IYlAa 420 (530)
|.+--..+ .+.... ++. -+...| .|==+-++ +..+++.++.+ .||||+
T Consensus 228 -C~hlk~~~-----------~~~lfa-----SPQC~Gy~~~~~~lt~emClPSle~I~rqIk~~vk~~~lk---sVFIAT 287 (362)
T 3zy2_A 228 -CEHIDTTT-----------NRPLFA-----SEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSIGAK---SVFVAS 287 (362)
T ss_dssp -HHTCCTTT-----------CCCCTT-----THHHHCGGGTTCCCCHHHHSCCHHHHHHHHHHHHHHHTCS---EEEEEE
T ss_pred -Hhhhcccc-----------Cccccc-----CCcccCCcccCcccchhccCCCHHHHHHHHHHHHHhcCCc---EEEEec
Confidence 87521100 000000 000 000111 23112323 45556666655 999999
Q ss_pred cccCCccccchhHHhhCCCcccccccCCccccccccccccccchhheeeecCCceeecCCCCchhhhhhhcccccC
Q 048096 421 GEPFGGHQALQPLAAEFPNLVTKEMLAQEGELSPYVNRSSSLAAIDYIVSLNSNVFVPSHGGNMGRAMQGHRAYVG 496 (530)
Q Consensus 421 GeiyGg~~~L~pL~~~FPnl~tKetLas~eEL~pF~~~ss~~AALDYiVcl~SDVFV~t~~GNfa~~V~GhR~y~G 496 (530)
-. ...+.-|+++|+.... .+-. +.| + .|+||.+||.+||+||+|..+.|...|.-.|--.|
T Consensus 288 Da----~~~~~ELk~~L~~~~v--~vv~---~~p-----e-~a~ID~~I~~~A~~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 288 DK----DHMIDEINEALKPYEI--EAHR---QEP-----D-DMYTSLAIMGRADLFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp SS----CCCHHHHHHHHGGGTC--CEEC---CSS-----C-CHHHHHHHHHHSSEEEECTTCHHHHHHHHHHHHSS
T ss_pred CC----HHHHHHHHHHhhccCc--eEEE---eCC-----c-hhHHHHHHHHhCCEeecCccccccHHHHHHHHhcC
Confidence 65 3457888888874211 1111 111 1 79999999999999999999999999999998888
No 3
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=97.85 E-value=0.0001 Score=73.49 Aligned_cols=260 Identities=14% Similarity=0.184 Sum_probs=127.2
Q ss_pred CCcEEEEEEcCchhHHHHHHHHHHHHHHHhcCeEeccccccccccCCCCCCCcccchHHHHHhccc--ceEEecc-CChh
Q 048096 174 KRKFLVVVASGGLNQQRNQIVDAVVIARILEAALVVPVLQVNLIWGDESEFSDIFNVKHFKRTLQA--DVRVVSS-LPST 250 (530)
Q Consensus 174 snGYL~V~~nGGLNQqR~~IcDaVaVARiLNATLVlP~L~~~s~W~D~S~F~DIFD~dhFI~sL~~--dVrIVk~-LP~~ 250 (530)
+.+||++...|||.+|--+++.|.++|...|.+|+|--.. ..|-. ..|.+.| +-.|. ...+ ...+... .|..
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~-~~y~~--~~~~~~f-p~~F~-~v~~~~~~~~~~~~~~~~ 77 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG-SCYVE--QPFSNAF-PAFFE-PVEDIAGVPVICDDRVNQ 77 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT-CTTCS--STTSBSH-HHHBC-CCSEETTEEEECSGGGGT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC-cccCC--CCccccC-ccccc-chhhhcccceeccccccc
Confidence 4679999999999999999999999999999998876443 22222 3466666 32332 1110 0011100 0000
Q ss_pred hhccccccccCCCCCCCchhH-----------HHHhHHh-------hh--hc-ceEEEeccCccccCCCCchhhhhhhhh
Q 048096 251 HLMSRQSIENQLPYNISPFWI-----------RARFFKQ-------LN--EE-GVLVLKGLDTKLSKNLPPDLQKLRCKV 309 (530)
Q Consensus 251 ~~~~~~~~~~~vp~~~sp~~y-----------~~~vlP~-------L~--k~-~VI~l~~~d~RLa~~lP~diQrLRCrv 309 (530)
...+....|.|+ .+++.|. +. .+ ....+.+. ..+ .+..-|. .-..
T Consensus 78 ---------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-~~~---~w~~~~~-~~~~ 143 (330)
T 2hhc_A 78 ---------LSFPGPFFPRWWNRPSIDCINRPDEQIFRERDELTELFQAREDSEANTIVCD-ACL---MWRCSEE-AERL 143 (330)
T ss_dssp ---------CCCCSSEESGGGGSCGGGGSCCCHHHHHHHHHHHHHHHHSSSCCSCSEEEEC-SCC---TTSSCHH-HHHH
T ss_pred ---------ccCCCCcCchhhhccccccccChHHhhhhhhhhhhhhhhhhhccCCCeEEcc-ccc---ccchhhh-hHHH
Confidence 000000001111 1222221 11 11 00112220 000 1111111 1234
Q ss_pred cccccccchhHHHHHHHHHHHHHhcCCeEEEeecchhhhHhhhcccCCCChhHH-HHHHHHHhhccccccCcccCChHhH
Q 048096 310 AFHALRFAAPIQELGNRLARRMWIEGPYIALHLRMEKDVWVRTGCLTGLGLEYD-EIIAKIRESQPEYLTGKLNMSHIQR 388 (530)
Q Consensus 310 nF~ALrF~p~I~~lg~~LV~RmR~~GpyIALHLR~EkDMlAfsgC~~g~~~~e~-~el~~~R~~~~~~~~~~~~i~~~~r 388 (530)
.|.-|+++++|++..+++.+.+-...++|+||.|.=.+. ..|.++..-++. .-++.+.....
T Consensus 144 i~~yl~p~~~i~~~i~~~~~~~~~~~~~VGVHIRrgD~~---~~~~~~~~~~~~~~~l~~~~~~i~-------------- 206 (330)
T 2hhc_A 144 IFRNIKLRSEIRARIDALYEEHFSGHSIIGVHVRHGNGE---DIMEHAPYWADSELALHQVCMAIR-------------- 206 (330)
T ss_dssp HHHHSCBCHHHHHHHHHHHHHHTTTSEEEEEEECC---------------CHHHHHHHHHHHHHHH--------------
T ss_pred HHhcCCccHHHHHHHHHHHHHhccCCceEEEEEecCCCC---cccccCcchHHHhHHHHHHHHHHH--------------
Confidence 457789999999999998876534569999999954331 123221100000 00111111000
Q ss_pred hhcCCCCCCHHHHHHHHHhcCCC-CCceEEEeecccCCccccchhHHhhCCCccccc-ccCCc--cccc-ccc-cccccc
Q 048096 389 RLAGLCPLTASEIARFLKALGAP-SSARIYIAGGEPFGGHQALQPLAAEFPNLVTKE-MLAQE--GELS-PYV-NRSSSL 462 (530)
Q Consensus 389 R~~G~CPLTPeEvgl~L~ALGf~-~~T~IYlAaGeiyGg~~~L~pL~~~FPnl~tKe-tLas~--eEL~-pF~-~~ss~~ 462 (530)
+. + .-.+ .+..||||+-+. ..++-|+++||++.+-. .+... ..+- +.. ......
T Consensus 207 ~~---------------~-~~~~~~~~~vfvaSDd~----~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 266 (330)
T 2hhc_A 207 KA---------------K-ALSYPKPVKVFLCTDSA----QVLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGIEGGAS 266 (330)
T ss_dssp HH---------------H-TSCCSSCEEEEEEESCH----HHHHHHHHHSTTEECCCC-----------CHHHHHHHHHH
T ss_pred HH---------------H-hccCcCceEEEEEeCCH----HHHHHHHHHcCCcccccceeecccccccccCchhhccchH
Confidence 00 0 0012 467999999984 35677899999743321 11100 0000 000 012456
Q ss_pred chhheeeecCCceee-cCCCCchhhhhh
Q 048096 463 AAIDYIVSLNSNVFV-PSHGGNMGRAMQ 489 (530)
Q Consensus 463 AALDYiVcl~SDVFV-~t~~GNfa~~V~ 489 (530)
+.+|.+.-.++|.+| .+..++|+...+
T Consensus 267 ~~~Dm~LLS~cd~~I~~~~~STFs~~aa 294 (330)
T 2hhc_A 267 ALIDMYLLARCATVIRFPPTSAFTRYAR 294 (330)
T ss_dssp HHHHHHHHTTCSEEEEESTTCGGGHHHH
T ss_pred HHHHHHHHHcCCeeEECCCCCCHHHHHH
Confidence 889999999999999 544677776555
No 4
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=97.70 E-value=0.0018 Score=70.04 Aligned_cols=253 Identities=16% Similarity=0.185 Sum_probs=142.5
Q ss_pred CCcEEEEEE--cCchhHHHHHHHHHHHHHHHhcCeEeccccccccccCCC-CCCCcccchHHHHHhcccceEEeccCChh
Q 048096 174 KRKFLVVVA--SGGLNQQRNQIVDAVVIARILEAALVVPVLQVNLIWGDE-SEFSDIFNVKHFKRTLQADVRVVSSLPST 250 (530)
Q Consensus 174 snGYL~V~~--nGGLNQqR~~IcDaVaVARiLNATLVlP~L~~~s~W~D~-S~F~DIFD~dhFI~sL~~dVrIVk~LP~~ 250 (530)
+..||+... ..|+.-+-..++=+..+|-.+|.|||+-.= . |.-. ..|+++|+. +...+... |.
T Consensus 144 ~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~---~-w~Y~~g~w~~yF~P--~s~~C~~~-------~~- 209 (526)
T 2de0_X 144 KAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQ---N-WRYATGGWETVFRP--VSETCTDR-------SG- 209 (526)
T ss_dssp GSCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECT---T-CSSCTTCGGGTBCC--SCSSCCCC-------CC-
T ss_pred CCCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECC---C-CCcCCCCHHHhhhC--cCccccCC-------Cc-
Confidence 458999876 579999999999999999999999999432 2 4432 468888874 11111110 00
Q ss_pred hhccccccccCCCCCCCchhHHHHhHHhhhhcceEEEeccC--ccc---cC-CCCch----hhhhh-------hhhcc-c
Q 048096 251 HLMSRQSIENQLPYNISPFWIRARFFKQLNEEGVLVLKGLD--TKL---SK-NLPPD----LQKLR-------CKVAF-H 312 (530)
Q Consensus 251 ~~~~~~~~~~~vp~~~sp~~y~~~vlP~L~k~~VI~l~~~d--~RL---a~-~lP~d----iQrLR-------CrvnF-~ 312 (530)
...+ .|-.... -..+.||.+...+ ++. .. .+|.+ ++++. |...+ .
T Consensus 210 --------~~~~------~w~~~~~---~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~~q~~~y 272 (526)
T 2de0_X 210 --------ISTG------HWSGEVK---DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKY 272 (526)
T ss_dssp --------SCCC------BCCCTTG---GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHHHHHHHH
T ss_pred --------cccC------CCCCccc---CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHHHHHHHHH
Confidence 0001 1211000 1245555443322 111 11 24443 23332 11111 2
Q ss_pred ccccchhHHHHHHHHHHHHHhcCCeEEEeecchhhhHhhhcccCCCChhHHHHHHHHHhhccccccCcccCChHhHhhcC
Q 048096 313 ALRFAAPIQELGNRLARRMWIEGPYIALHLRMEKDVWVRTGCLTGLGLEYDEIIAKIRESQPEYLTGKLNMSHIQRRLAG 392 (530)
Q Consensus 313 ALrF~p~I~~lg~~LV~RmR~~GpyIALHLR~EkDMlAfsgC~~g~~~~e~~el~~~R~~~~~~~~~~~~i~~~~rR~~G 392 (530)
-+|+.++|++..+++.+++.-.+|.|+||.|-= |-+.. ....-+ ++.|-.....+.
T Consensus 273 l~rP~~~i~~~I~~~~~~l~~~~piVGVHIRrG-Dk~~~---E~~~~~-----~~~Y~~~v~~~~--------------- 328 (526)
T 2de0_X 273 LIRPQPWLEKEIEEATKKLGFKHPVIGVHVRRT-DKVGT---EAAFHP-----IEEYMVHVEEHF--------------- 328 (526)
T ss_dssp HTCBCHHHHHHHHHHHHHHTCCSSEEEEEECCC---------CCCSCS-----HHHHHHHHHHHH---------------
T ss_pred HcCCCHHHHHHHHHHHHHhCCCCCEEEEEEeCC-CCCcc---ccccCC-----HHHHHHHHHHHH---------------
Confidence 489999999999999998866889999999954 22111 100111 011100000010
Q ss_pred CCCCCHHHHHHHHHhcCCCCCceEEEeecccCCccccchhHHhhCCCc--ccccccCC-ccccccccccccccchhheee
Q 048096 393 LCPLTASEIARFLKALGAPSSARIYIAGGEPFGGHQALQPLAAEFPNL--VTKEMLAQ-EGELSPYVNRSSSLAAIDYIV 469 (530)
Q Consensus 393 ~CPLTPeEvgl~L~ALGf~~~T~IYlAaGeiyGg~~~L~pL~~~FPnl--~tKetLas-~eEL~pF~~~ss~~AALDYiV 469 (530)
..|+....+..+.||||+.+ ...++-+++.||+. ++-..... .+.-..+...+...+.+|.++
T Consensus 329 ----------~~l~~~~~~~~~~ifLATDD----p~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~l 394 (526)
T 2de0_X 329 ----------QLLARRMQVDKKRVYLATDD----PSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHF 394 (526)
T ss_dssp ----------HHHHTTSCCSSCEEEEEESC----HHHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHH
T ss_pred ----------HHHHhhcCCCCCeEEEEcCC----HHHHHHHHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHH
Confidence 01222245778899999988 44567778889985 32211111 111111222233568899999
Q ss_pred ecCCceeecCCCCchhhhhhhccccc
Q 048096 470 SLNSNVFVPSHGGNMGRAMQGHRAYV 495 (530)
Q Consensus 470 cl~SDVFV~t~~GNfa~~V~GhR~y~ 495 (530)
.+++|+||++..+|+++++...|.-.
T Consensus 395 Ls~cd~~Vgt~sS~~srla~~l~~~~ 420 (526)
T 2de0_X 395 LSQADFLVCTFSSQVCRVAYEIMQTL 420 (526)
T ss_dssp HHHSSEEEECTTSHHHHHHHHHHTTS
T ss_pred HhcCCeeecCCCCHHHHHHHHHhcCc
Confidence 99999999999999999887766433
No 5
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=34.44 E-value=18 Score=27.28 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=21.0
Q ss_pred ccccchhHHHHHHHHHHHHHhcCCeE
Q 048096 313 ALRFAAPIQELGNRLARRMWIEGPYI 338 (530)
Q Consensus 313 ALrF~p~I~~lg~~LV~RmR~~GpyI 338 (530)
|+-|+.-+.++|.++|.||++...|.
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKtGe~Ff 27 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRSGERFL 27 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CccHHHHHHHHHHHHHHHHHccccHH
Confidence 45577889999999999999876543
No 6
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=19.99 E-value=97 Score=27.41 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHHHhcCCCCCceEEEeecc
Q 048096 393 LCPLTASEIARFLKALGAPSSARIYIAGGE 422 (530)
Q Consensus 393 ~CPLTPeEvgl~L~ALGf~~~T~IYlAaGe 422 (530)
.|||++||+...|+.|--+. ...||...+
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~-~~~yi~i~r 45 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPT-NKLFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSS-CEEEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCc-ceeeeeehh
Confidence 79999999999999988554 356665554
No 7
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=16.41 E-value=52 Score=29.20 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHhcCCCCCceEEEeecccCC
Q 048096 396 LTASEIARFLKALGAPSSARIYIAGGEPFG 425 (530)
Q Consensus 396 LTPeEvgl~L~ALGf~~~T~IYlAaGeiyG 425 (530)
|-|.||+.+|...||..+. + +.+.||
T Consensus 3 LRPDEVArVLEk~GF~~D~---v-t~kaYG 28 (124)
T 2g7j_A 3 LRPDEVARVLEKAGFTVDV---V-TNKTYG 28 (124)
T ss_dssp CCHHHHHHHHHHTTCEEEE---E-ETTEEE
T ss_pred cChHHHHHHHHHcCceEEE---e-eccccc
Confidence 6799999999999998553 2 344555
No 8
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=16.30 E-value=1.8e+02 Score=20.69 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=21.7
Q ss_pred EEEEEEcCchhH-HHHHHHHHH--HHHHHhcC
Q 048096 177 FLVVVASGGLNQ-QRNQIVDAV--VIARILEA 205 (530)
Q Consensus 177 YL~V~~nGGLNQ-qR~~IcDaV--aVARiLNA 205 (530)
|+.|.+++|... |+.++++++ ++++.+|.
T Consensus 5 ~i~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~ 36 (63)
T 2x4k_A 5 IVNVKLLEGRSDEQLKNLVSEVTDAVEKTTGA 36 (63)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 788999999754 688888877 56666664
No 9
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=15.00 E-value=1.2e+02 Score=27.47 Aligned_cols=97 Identities=13% Similarity=0.192 Sum_probs=54.1
Q ss_pred EEEeecchhhhHhhhcccCC-----C-ChhHHHHHHHHHhhccccccCcccCChHhHhhcCCCC-CCHHHH-HHHHHhcC
Q 048096 338 IALHLRMEKDVWVRTGCLTG-----L-GLEYDEIIAKIRESQPEYLTGKLNMSHIQRRLAGLCP-LTASEI-ARFLKALG 409 (530)
Q Consensus 338 IALHLR~EkDMlAfsgC~~g-----~-~~~e~~el~~~R~~~~~~~~~~~~i~~~~rR~~G~CP-LTPeEv-gl~L~ALG 409 (530)
|+--++.+.. -.|+||.-. . --+|+-++.++-..-.+.++ ...+... .+. | ++|=-. .-+|..+|
T Consensus 38 VGAal~~~dG-~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~G~~~l~-~i~v~~~----~~~-~~~~PCG~Crq~l~E~~ 110 (146)
T 2fr5_A 38 VGAALLTGDG-RIFSGCNIENACYPLGVCAERTAIQKAISEGYKDFR-AIAISSD----LQE-EFISPCGACRQVMREFG 110 (146)
T ss_dssp EEEEEEETTS-CEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEE-EEEEEES----CSS-SCCCCCHHHHHHHHHTC
T ss_pred EEEEEEeCCC-cEEEEEeccccCCCCCcCHHHHHHHHHHhCCCCceE-EEEEEeC----CCC-cccCCCHHHHHHHHHhC
Confidence 6666777655 456788622 1 13566555544322111011 1111111 011 2 334322 34677777
Q ss_pred CCCCceEEEeecccCCccccchhHHhhCCCccccccc
Q 048096 410 APSSARIYIAGGEPFGGHQALQPLAAEFPNLVTKEML 446 (530)
Q Consensus 410 f~~~T~IYlAaGeiyGg~~~L~pL~~~FPnl~tKetL 446 (530)
.++.||++..+ |+.....|.++.|.-++.++|
T Consensus 111 --~~~~v~~~~~~---g~~~~~~l~eLLP~~F~~~~l 142 (146)
T 2fr5_A 111 --TDWAVYMTKPD---GTFVVRTVQELLPASFGPEDL 142 (146)
T ss_dssp --SSCEEEEECTT---SCEEEEEHHHHSTTCCCGGGG
T ss_pred --CCCEEEEECCC---CCEEEEEHHHhCCCCCChHHH
Confidence 78999999876 554456899999999988877
No 10
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=12.34 E-value=35 Score=26.63 Aligned_cols=49 Identities=24% Similarity=0.432 Sum_probs=32.3
Q ss_pred cccchhHHhhCCCcccccccCCccccccccccccccchhheeeecCCceeecCC
Q 048096 427 HQALQPLAAEFPNLVTKEMLAQEGELSPYVNRSSSLAAIDYIVSLNSNVFVPSH 480 (530)
Q Consensus 427 ~~~L~pL~~~FPnl~tKetLas~eEL~pF~~~ss~~AALDYiVcl~SDVFV~t~ 480 (530)
+..++-|++|||++ +++.+-. -|. ++..+..+|||-...+..+-|=|++
T Consensus 10 ee~l~~L~emFP~l-d~~~I~~--vL~--a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 10 EEDLKAIQDMFPNM-DQEVIRS--VLE--AQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSS-CHHHHHH--HHT--TTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCC-CHHHHHH--HHH--HcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 45688899999987 3333321 111 3466888999988887777665543
Done!