Query 048096
Match_columns 530
No_of_seqs 183 out of 396
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 10:31:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048096.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048096hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ihoa2 d.3.1.18 (A:156-293) A 40.7 2.4 0.00018 36.1 -0.3 35 206-240 31-70 (138)
2 d1l5ia_ d.89.1.4 (A:) DNA-bind 28.2 25 0.0018 29.2 4.1 29 393-422 17-45 (118)
3 d1f54a_ a.39.1.5 (A:) Calmodul 26.9 33 0.0024 24.7 4.3 16 396-411 27-42 (77)
4 d2gh1a1 c.66.1.49 (A:13-293) M 21.4 21 0.0016 32.0 2.6 91 309-412 99-189 (281)
5 d1oqya2 a.5.2.1 (A:317-360) DN 19.7 6.9 0.0005 27.7 -1.0 20 403-422 9-30 (44)
6 d1jjcb2 a.6.1.1 (B:400-474) Do 18.0 40 0.0029 25.1 3.0 24 387-411 12-35 (75)
7 d1vpqa_ c.1.32.1 (A:) Hypothet 17.6 77 0.0056 28.5 5.6 27 268-294 148-174 (260)
8 d2g7ja1 d.198.5.1 (A:1-112) Pu 16.1 28 0.002 28.4 1.8 26 396-425 3-28 (112)
9 d1vjna_ d.157.1.4 (A:) Hypothe 16.1 75 0.0055 27.2 4.9 65 177-249 130-199 (209)
10 d2fr5a1 c.97.1.1 (A:11-146) mo 15.8 42 0.0031 27.7 3.0 100 338-448 28-134 (136)
No 1
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=40.67 E-value=2.4 Score=36.06 Aligned_cols=35 Identities=26% Similarity=0.471 Sum_probs=29.1
Q ss_pred eEeccccccccccCCC-----CCCCcccchHHHHHhcccc
Q 048096 206 ALVVPVLQVNLIWGDE-----SEFSDIFNVKHFKRTLQAD 240 (530)
Q Consensus 206 TLVlP~L~~~s~W~D~-----S~F~DIFD~dhFI~sL~~d 240 (530)
-||+|...-+++|+++ .-=+.|||-|.|--..+.-
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaA 70 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAA 70 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHH
Confidence 3999999999999986 3457899999998776654
No 2
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=28.16 E-value=25 Score=29.16 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHHHhcCCCCCceEEEeecc
Q 048096 393 LCPLTASEIARFLKALGAPSSARIYIAGGE 422 (530)
Q Consensus 393 ~CPLTPeEvgl~L~ALGf~~~T~IYlAaGe 422 (530)
+||||+||+...|+.|--+.+. .||..++
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~r 45 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEcc
Confidence 7999999999999999765544 5666544
No 3
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.89 E-value=33 Score=24.70 Aligned_cols=16 Identities=31% Similarity=0.681 Sum_probs=10.2
Q ss_pred CCHHHHHHHHHhcCCC
Q 048096 396 LTASEIARFLKALGAP 411 (530)
Q Consensus 396 LTPeEvgl~L~ALGf~ 411 (530)
++++|...+|+.+|++
T Consensus 27 I~~~el~~~l~~~g~~ 42 (77)
T d1f54a_ 27 ISSSELATVMRSLGLS 42 (77)
T ss_dssp EEHHHHHHHHHHHTCC
T ss_pred EChHHHHHHHHHhCCC
Confidence 5666666666666655
No 4
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}
Probab=21.44 E-value=21 Score=31.96 Aligned_cols=91 Identities=11% Similarity=0.061 Sum_probs=55.7
Q ss_pred hcccccccchhHHHHHHHHHHHHHhcCCeEEEeecchhhhHhhhcccCCCChhHHHHHHHHHhhccccccCcccCChHhH
Q 048096 309 VAFHALRFAAPIQELGNRLARRMWIEGPYIALHLRMEKDVWVRTGCLTGLGLEYDEIIAKIRESQPEYLTGKLNMSHIQR 388 (530)
Q Consensus 309 vnF~ALrF~p~I~~lg~~LV~RmR~~GpyIALHLR~EkDMlAfsgC~~g~~~~e~~el~~~R~~~~~~~~~~~~i~~~~r 388 (530)
++.++|...++.+++-+++.+.|+.+|.++....-...++..+ ...+....+...+....... ....
T Consensus 99 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----------~~~~ 165 (281)
T d2gh1a1 99 ICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASY--LLDGEKQSEFIQLGVLQKLF-----------ESDT 165 (281)
T ss_dssp EEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHTSE--EETTSCHHHHCCHHHHHHHH-----------HHHH
T ss_pred EEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCccccchhh--ccCchhhhhhhhHHHHHHHH-----------HHHH
Confidence 3456677777788888888888888898888766555555544 22333222211111111110 1223
Q ss_pred hhcCCCCCCHHHHHHHHHhcCCCC
Q 048096 389 RLAGLCPLTASEIARFLKALGAPS 412 (530)
Q Consensus 389 R~~G~CPLTPeEvgl~L~ALGf~~ 412 (530)
+..|..|....++..+|+..||.+
T Consensus 166 ~~~~~~~~i~~~l~~~l~eaGf~~ 189 (281)
T d2gh1a1 166 QRNGKDGNIGMKIPIYLSELGVKN 189 (281)
T ss_dssp HTTCCCTTGGGTHHHHHHHTTCEE
T ss_pred HHcCCCCCHHHHHHHHHHHcCCeE
Confidence 446777777788889999999984
No 5
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.67 E-value=6.9 Score=27.70 Aligned_cols=20 Identities=45% Similarity=0.571 Sum_probs=15.7
Q ss_pred HHHHhcCCCCCc--eEEEeecc
Q 048096 403 RFLKALGAPSSA--RIYIAGGE 422 (530)
Q Consensus 403 l~L~ALGf~~~T--~IYlAaGe 422 (530)
.=|.+|||+++. .+|+|-.+
T Consensus 9 eRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 9 ERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp HHHHHHTCCSHHHHHHTSSSSS
T ss_pred HHHHHcCCCHHHHHHHHHHhCc
Confidence 347899999988 46888776
No 6
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=17.96 E-value=40 Score=25.12 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=20.4
Q ss_pred hHhhcCCCCCCHHHHHHHHHhcCCC
Q 048096 387 QRRLAGLCPLTASEIARFLKALGAP 411 (530)
Q Consensus 387 ~rR~~G~CPLTPeEvgl~L~ALGf~ 411 (530)
.+|..|.. ++++|+...|+.|||.
T Consensus 12 i~~~lG~~-i~~~~i~~~L~~Lg~~ 35 (75)
T d1jjcb2 12 ANRLLGTS-YPEAEQIAILKRLGCR 35 (75)
T ss_dssp HHHHHTCC-CCHHHHHHHHHHTTCE
T ss_pred HHHHhCCC-CCHHHHHHHHHHcCCc
Confidence 34667776 9999999999999996
No 7
>d1vpqa_ c.1.32.1 (A:) Hypothetical protein TM1631 {Thermotoga maritima [TaxId: 2336]}
Probab=17.59 E-value=77 Score=28.54 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=21.7
Q ss_pred chhHHHHhHHhhhhcceEEEeccCccc
Q 048096 268 PFWIRARFFKQLNEEGVLVLKGLDTKL 294 (530)
Q Consensus 268 p~~y~~~vlP~L~k~~VI~l~~~d~RL 294 (530)
++|+.+.+...|+++||+++..-...+
T Consensus 148 ~sW~~~~~~~~L~~~~v~~V~~D~p~~ 174 (260)
T d1vpqa_ 148 YSWDREETYEFLRNHGITFVVVDEPKL 174 (260)
T ss_dssp GGGCSHHHHHHHHHHTCEEEEEECCCC
T ss_pred chhccHHHHHHHHHcCCEEEEECCCCC
Confidence 579999999999999999876544444
No 8
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=16.14 E-value=28 Score=28.37 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHhcCCCCCceEEEeecccCC
Q 048096 396 LTASEIARFLKALGAPSSARIYIAGGEPFG 425 (530)
Q Consensus 396 LTPeEvgl~L~ALGf~~~T~IYlAaGeiyG 425 (530)
|-|.||+.+|+.-||..+ |+ +-+.||
T Consensus 3 LRPDEVArVLe~aGF~~d---~v-t~kaYG 28 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVD---VV-TNKTYG 28 (112)
T ss_dssp CCHHHHHHHHHHTTCEEE---EE-ETTEEE
T ss_pred cChHHHHHHHHHcCceEE---Ee-eccccc
Confidence 679999999999999744 33 344555
No 9
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=16.06 E-value=75 Score=27.19 Aligned_cols=65 Identities=18% Similarity=0.320 Sum_probs=39.2
Q ss_pred EEEEEEcCchhHHHHHHHHHHHHHHHhcCeEeccccccccccCCCCCCCcccchHHHHHhccc-----ceEEeccCCh
Q 048096 177 FLVVVASGGLNQQRNQIVDAVVIARILEAALVVPVLQVNLIWGDESEFSDIFNVKHFKRTLQA-----DVRVVSSLPS 249 (530)
Q Consensus 177 YL~V~~nGGLNQqR~~IcDaVaVARiLNATLVlP~L~~~s~W~D~S~F~DIFD~dhFI~sL~~-----dVrIVk~LP~ 249 (530)
.+++.+.|.. ...--+|+-+|+.|++-.|||-= |+.....| ++=..|.|++.++. ++-.+.++|+
T Consensus 130 va~lpigg~~---~m~~~ea~~~~~~l~pk~viP~H----~~t~~~~~-~~~~~~~f~~~~~~~~~~~~~~~l~~~~~ 199 (209)
T d1vjna_ 130 VLLVPVGGTY---TIGPKEAKEVADLLNAKVIIPMH----YKTKYLKF-NLLPVDDFLKLFDSYERVGNILELFEKPK 199 (209)
T ss_dssp EEEEECCSSS---SCCHHHHHHHHHHTTCSEEEEES----CCCSSCCT-TCCCTHHHHTTSSCCEECCSEEEESSCCC
T ss_pred EEEEecCCcc---ccCHHHHHHHHHHhCCCEEEEec----cCCccccc-CcCCHHHHHHHhhhhcccCcEEEeccCCC
Confidence 4555554432 13456899999999999999962 22222333 45557888887664 3333445554
No 10
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.79 E-value=42 Score=27.73 Aligned_cols=100 Identities=15% Similarity=0.209 Sum_probs=56.5
Q ss_pred EEEeecchhhhHhhhccc-----CCCC-hhHHHHHHHHHhhccccccCcccCChHhHhhcCCCCCCHHHH-HHHHHhcCC
Q 048096 338 IALHLRMEKDVWVRTGCL-----TGLG-LEYDEIIAKIRESQPEYLTGKLNMSHIQRRLAGLCPLTASEI-ARFLKALGA 410 (530)
Q Consensus 338 IALHLR~EkDMlAfsgC~-----~g~~-~~e~~el~~~R~~~~~~~~~~~~i~~~~rR~~G~CPLTPeEv-gl~L~ALGf 410 (530)
|+-=+|.+ |=-.|+||. ++.+ -+|+-+|..+-....+-.. ...+.. ...+. +++|=-. --+|..+
T Consensus 28 VGAa~~~~-dG~i~~G~NvEnasy~~~iCAEr~Ai~~a~~~g~~~~~-~~~~~~---~~~~~-~~~PCG~CRQ~l~E~-- 99 (136)
T d2fr5a1 28 VGAALLTG-DGRIFSGCNIENACYPLGVCAERTAIQKAISEGYKDFR-AIAISS---DLQEE-FISPCGACRQVMREF-- 99 (136)
T ss_dssp EEEEEEET-TSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEE-EEEEEE---SCSSS-CCCCCHHHHHHHHHT--
T ss_pred EEEEEEeC-CCCEEEEEeecccccccccchhheeeeeeeccCCccEE-EEEeec---ccCCC-CCCcchhhhHHHHhh--
Confidence 66666776 445677775 2222 4777777766543211000 000110 00111 1333222 2455554
Q ss_pred CCCceEEEeecccCCccccchhHHhhCCCcccccccCC
Q 048096 411 PSSARIYIAGGEPFGGHQALQPLAAEFPNLVTKEMLAQ 448 (530)
Q Consensus 411 ~~~T~IYlAaGeiyGg~~~L~pL~~~FPnl~tKetLas 448 (530)
..++.||+...+ |+.....|.++.|.-+++++|-.
T Consensus 100 ~~~~~i~~~~~~---~~~~~~tl~eLLP~~F~~~~L~~ 134 (136)
T d2fr5a1 100 GTDWAVYMTKPD---GTFVVRTVQELLPASFGPEDLQK 134 (136)
T ss_dssp CSSCEEEEECTT---SCEEEEEHHHHSTTCCCGGGGTC
T ss_pred CCCceEEEECCC---CCEEEeEHHHhCcCCCChHHhCc
Confidence 468999998877 66667789999999999998843
Done!