Query 048097
Match_columns 224
No_of_seqs 261 out of 1643
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:14:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03404 bicupin_oxalic bicup 100.0 2.8E-28 6.1E-33 222.7 19.9 163 46-219 200-362 (367)
2 PLN00212 glutelin; Provisional 99.9 3.9E-25 8.4E-30 207.4 15.6 146 70-221 323-470 (493)
3 TIGR03404 bicupin_oxalic bicup 99.9 1.2E-23 2.6E-28 192.2 18.2 146 59-219 37-185 (367)
4 PF00190 Cupin_1: Cupin; Inte 99.9 6.8E-24 1.5E-28 169.9 12.4 138 63-214 2-144 (144)
5 smart00835 Cupin_1 Cupin. This 99.9 2.7E-20 5.8E-25 149.4 17.0 135 73-213 8-145 (146)
6 PLN00212 glutelin; Provisional 99.8 1.1E-19 2.5E-24 170.7 19.6 140 75-219 61-249 (493)
7 COG2140 Thermophilic glucose-6 99.8 4.9E-19 1.1E-23 148.9 12.7 151 56-221 49-201 (209)
8 PF07883 Cupin_2: Cupin domain 99.4 3.4E-13 7.4E-18 94.1 7.6 70 99-176 2-71 (71)
9 COG1917 Uncharacterized conser 99.4 4.4E-12 9.5E-17 99.6 11.3 86 85-178 33-118 (131)
10 PRK13290 ectC L-ectoine syntha 99.4 1.2E-11 2.7E-16 97.3 11.7 81 93-183 33-114 (125)
11 COG0662 {ManC} Mannose-6-phosp 99.4 9.8E-12 2.1E-16 97.8 11.1 82 93-182 34-115 (127)
12 PRK04190 glucose-6-phosphate i 99.3 3.8E-11 8.3E-16 100.9 13.5 88 89-179 62-157 (191)
13 COG3837 Uncharacterized conser 99.1 2.5E-10 5.4E-15 92.1 9.4 82 86-177 35-119 (161)
14 PRK11171 hypothetical protein; 99.1 1.5E-09 3.3E-14 95.5 13.9 108 51-176 27-135 (266)
15 TIGR01479 GMP_PMI mannose-1-ph 99.1 7.5E-10 1.6E-14 104.5 11.7 78 94-179 375-452 (468)
16 PRK09943 DNA-binding transcrip 99.1 1.2E-09 2.6E-14 90.8 11.0 76 93-177 105-181 (185)
17 COG4101 Predicted mannose-6-ph 99.1 1.3E-09 2.8E-14 84.3 9.8 84 94-183 45-129 (142)
18 PRK15460 cpsB mannose-1-phosph 99.1 1.2E-09 2.6E-14 103.4 11.4 77 93-177 383-459 (478)
19 PF01050 MannoseP_isomer: Mann 99.0 3.7E-09 8.1E-14 85.8 10.0 77 93-177 61-137 (151)
20 TIGR03214 ura-cupin putative a 99.0 4.4E-09 9.5E-14 92.3 10.9 73 94-174 178-250 (260)
21 TIGR03214 ura-cupin putative a 98.9 9.2E-09 2E-13 90.3 11.3 75 94-176 57-132 (260)
22 PRK11171 hypothetical protein; 98.9 9.8E-09 2.1E-13 90.4 9.9 73 94-175 183-256 (266)
23 PF02041 Auxin_BP: Auxin bindi 98.7 1.7E-07 3.7E-12 75.3 11.1 100 87-189 38-139 (167)
24 PF06560 GPI: Glucose-6-phosph 98.7 2.5E-07 5.4E-12 77.2 11.4 86 90-178 45-146 (182)
25 PRK13264 3-hydroxyanthranilate 98.5 7.7E-07 1.7E-11 73.8 9.4 66 103-175 42-107 (177)
26 PF11699 CENP-C_C: Mif2/CENP-C 98.5 8.8E-07 1.9E-11 65.3 8.3 74 94-175 11-84 (85)
27 TIGR03037 anthran_nbaC 3-hydro 98.4 1.7E-06 3.6E-11 70.7 9.8 66 103-175 36-101 (159)
28 TIGR02451 anti_sig_ChrR anti-s 98.4 1.9E-06 4.1E-11 73.7 8.5 72 95-179 127-198 (215)
29 PF12973 Cupin_7: ChrR Cupin-l 98.3 1.7E-06 3.7E-11 63.9 7.0 66 94-174 23-88 (91)
30 PF02311 AraC_binding: AraC-li 98.3 3.1E-06 6.8E-11 64.4 7.8 64 104-176 12-75 (136)
31 PF03079 ARD: ARD/ARD' family; 98.2 1.3E-05 2.8E-10 65.5 10.3 71 107-182 84-154 (157)
32 PRK15457 ethanolamine utilizat 98.2 1.4E-05 3.1E-10 68.7 9.8 69 95-176 157-225 (233)
33 PRK10371 DNA-binding transcrip 98.0 2.3E-05 4.9E-10 70.0 8.9 59 100-167 31-89 (302)
34 TIGR02272 gentisate_1_2 gentis 98.0 1.2E-05 2.7E-10 73.0 7.1 76 94-177 80-155 (335)
35 COG1791 Uncharacterized conser 98.0 5.9E-05 1.3E-09 62.0 9.9 73 109-186 89-161 (181)
36 PRK10296 DNA-binding transcrip 97.9 8.5E-05 1.8E-09 64.8 10.1 52 105-165 33-84 (278)
37 PF05523 FdtA: WxcM-like, C-te 97.9 0.0001 2.2E-09 58.4 9.3 78 96-179 33-112 (131)
38 COG4297 Uncharacterized protei 97.8 4.7E-05 1E-09 60.6 5.6 66 105-176 52-118 (163)
39 COG3435 Gentisate 1,2-dioxygen 97.8 4E-05 8.7E-10 68.2 5.7 92 79-178 71-167 (351)
40 PRK13500 transcriptional activ 97.8 9.3E-05 2E-09 66.2 8.2 55 104-167 57-111 (312)
41 TIGR02297 HpaA 4-hydroxyphenyl 97.8 6.2E-05 1.3E-09 65.7 6.9 57 105-169 33-89 (287)
42 PF05899 Cupin_3: Protein of u 97.8 7.4E-05 1.6E-09 53.3 5.8 58 95-162 7-64 (74)
43 PRK13501 transcriptional activ 97.8 9.4E-05 2E-09 65.1 7.6 62 94-166 19-80 (290)
44 PF14499 DUF4437: Domain of un 97.7 4.9E-05 1.1E-09 66.5 5.6 73 93-173 34-106 (251)
45 KOG2107 Uncharacterized conser 97.7 7.4E-05 1.6E-09 61.1 5.5 57 107-167 85-141 (179)
46 PRK13503 transcriptional activ 97.7 0.00016 3.4E-09 62.8 7.4 53 104-165 24-76 (278)
47 PF06339 Ectoine_synth: Ectoin 97.6 0.00084 1.8E-08 52.6 10.3 82 92-182 32-113 (126)
48 COG3257 GlxB Uncharacterized p 97.6 0.00072 1.6E-08 57.8 9.7 74 95-176 61-135 (264)
49 PRK13502 transcriptional activ 97.5 0.0004 8.8E-09 60.6 7.9 56 103-167 26-81 (282)
50 TIGR02272 gentisate_1_2 gentis 97.5 0.0004 8.6E-09 63.2 7.5 86 76-174 232-318 (335)
51 PF06052 3-HAO: 3-hydroxyanthr 97.4 0.0022 4.8E-08 51.8 10.1 79 98-183 36-114 (151)
52 COG1898 RfbC dTDP-4-dehydrorha 97.0 0.0077 1.7E-07 50.0 9.9 71 104-174 54-130 (173)
53 PF06249 EutQ: Ethanolamine ut 97.0 0.0021 4.6E-08 52.2 6.2 58 95-163 77-134 (152)
54 PF05995 CDO_I: Cysteine dioxy 96.7 0.044 9.5E-07 45.3 11.9 86 94-179 74-165 (175)
55 COG4766 EutQ Ethanolamine util 96.6 0.02 4.2E-07 46.6 9.1 68 95-175 100-167 (176)
56 COG3450 Predicted enzyme of th 96.5 0.0052 1.1E-07 47.8 5.1 60 95-164 45-104 (116)
57 PF00908 dTDP_sugar_isom: dTDP 96.4 0.02 4.4E-07 47.6 8.6 71 103-173 51-129 (176)
58 TIGR01221 rmlC dTDP-4-dehydror 96.4 0.068 1.5E-06 44.5 11.2 71 103-173 52-129 (176)
59 PF13621 Cupin_8: Cupin-like d 96.2 0.024 5.3E-07 47.9 8.2 72 97-169 132-236 (251)
60 COG3435 Gentisate 1,2-dioxygen 95.9 0.029 6.3E-07 50.3 7.2 89 74-174 241-330 (351)
61 PF08007 Cupin_4: Cupin superf 95.7 0.13 2.9E-06 46.4 10.6 70 96-166 114-200 (319)
62 PF04209 HgmA: homogentisate 1 95.5 0.12 2.6E-06 48.6 9.8 56 109-174 139-194 (424)
63 PF13759 2OG-FeII_Oxy_5: Putat 95.4 0.055 1.2E-06 40.3 6.1 74 100-173 5-98 (101)
64 PF02678 Pirin: Pirin; InterP 95.2 0.07 1.5E-06 40.8 6.1 62 105-173 39-103 (107)
65 PRK05341 homogentisate 1,2-dio 95.1 0.19 4.1E-06 47.3 10.0 59 108-175 146-204 (438)
66 PF07385 DUF1498: Protein of u 94.8 0.21 4.6E-06 43.0 8.7 78 100-179 92-189 (225)
67 PLN02658 homogentisate 1,2-dio 94.8 0.29 6.3E-06 46.1 10.2 57 109-174 140-196 (435)
68 TIGR02466 conserved hypothetic 94.7 0.16 3.5E-06 43.1 7.6 76 96-177 97-197 (201)
69 COG1741 Pirin-related protein 94.7 0.12 2.6E-06 46.0 7.2 68 99-173 48-119 (276)
70 TIGR01015 hmgA homogentisate 1 94.6 0.31 6.7E-06 45.8 10.0 56 108-173 140-195 (429)
71 PF12852 Cupin_6: Cupin 94.6 0.18 3.8E-06 41.5 7.6 43 117-165 36-78 (186)
72 PF14499 DUF4437: Domain of un 94.4 0.037 8.1E-07 48.5 3.2 75 95-177 171-245 (251)
73 PF07847 DUF1637: Protein of u 94.2 0.28 6.1E-06 41.6 8.1 88 90-178 39-143 (200)
74 PRK12335 tellurite resistance 94.2 0.24 5.1E-06 43.8 8.0 62 103-166 19-82 (287)
75 PRK00924 5-keto-4-deoxyuronate 93.9 0.4 8.8E-06 42.6 8.8 82 94-180 174-261 (276)
76 PF02373 JmjC: JmjC domain, hy 93.8 0.13 2.9E-06 38.3 5.0 30 139-168 78-107 (114)
77 PF05118 Asp_Arg_Hydrox: Aspar 93.7 0.19 4.2E-06 40.9 6.1 82 85-174 68-156 (163)
78 KOG3706 Uncharacterized conser 93.6 0.047 1E-06 51.8 2.4 91 74-165 285-404 (629)
79 PRK10572 DNA-binding transcrip 93.3 0.29 6.3E-06 42.8 7.0 44 116-167 49-92 (290)
80 PRK09685 DNA-binding transcrip 92.1 1.1 2.5E-05 39.1 9.1 66 94-167 44-114 (302)
81 KOG3995 3-hydroxyanthranilate 91.4 0.34 7.3E-06 41.6 4.6 57 103-164 41-97 (279)
82 COG5553 Predicted metal-depend 91.2 1 2.2E-05 37.2 7.0 77 95-176 73-155 (191)
83 COG3806 ChrR Transcriptional a 91.2 0.75 1.6E-05 39.0 6.5 85 75-177 113-197 (216)
84 PF05726 Pirin_C: Pirin C-term 91.1 0.91 2E-05 34.1 6.4 67 97-174 1-67 (104)
85 COG3508 HmgA Homogentisate 1,2 91.1 2.9 6.3E-05 38.6 10.5 73 93-175 123-196 (427)
86 PF06865 DUF1255: Protein of u 90.8 2.3 5E-05 31.9 8.1 44 115-164 40-83 (94)
87 PRK10579 hypothetical protein; 90.3 2.6 5.6E-05 31.6 7.9 44 115-164 40-83 (94)
88 PRK15131 mannose-6-phosphate i 90.1 1.8 3.9E-05 40.4 8.7 59 94-163 320-378 (389)
89 PF09313 DUF1971: Domain of un 89.9 5.8 0.00013 28.9 9.4 63 104-168 12-76 (82)
90 KOG2757 Mannose-6-phosphate is 88.5 2.4 5.3E-05 39.2 8.0 75 94-177 332-406 (411)
91 COG3822 ABC-type sugar transpo 88.3 2.3 5E-05 36.0 7.2 80 99-180 90-189 (225)
92 COG3257 GlxB Uncharacterized p 88.1 2.2 4.7E-05 36.9 7.0 72 92-172 179-251 (264)
93 PLN02288 mannose-6-phosphate i 87.4 2 4.3E-05 40.2 6.9 58 94-158 333-390 (394)
94 TIGR00218 manA mannose-6-phosp 87.3 3.5 7.7E-05 36.8 8.4 60 93-163 233-292 (302)
95 PRK09391 fixK transcriptional 86.2 8.2 0.00018 32.6 9.7 124 94-221 35-204 (230)
96 COG2850 Uncharacterized conser 86.0 2 4.3E-05 39.7 6.0 64 101-165 125-202 (383)
97 PF14525 AraC_binding_2: AraC- 85.0 11 0.00025 29.3 9.4 66 94-167 33-98 (172)
98 PF00027 cNMP_binding: Cyclic 84.2 3.2 7E-05 28.6 5.4 48 101-152 3-51 (91)
99 PRK11753 DNA-binding transcrip 84.2 11 0.00024 30.8 9.4 54 98-154 21-74 (211)
100 PF11142 DUF2917: Protein of u 83.8 4.9 0.00011 27.7 5.9 56 100-163 2-57 (63)
101 PF04962 KduI: KduI/IolB famil 83.4 20 0.00044 31.5 11.1 96 78-180 136-247 (261)
102 COG3123 Uncharacterized protei 82.1 5.2 0.00011 29.5 5.6 41 116-162 41-81 (94)
103 PRK13918 CRP/FNR family transc 81.0 7.7 0.00017 31.6 7.2 55 99-155 8-63 (202)
104 smart00100 cNMP Cyclic nucleot 80.3 11 0.00023 26.6 7.0 55 98-155 18-72 (120)
105 PF06172 Cupin_5: Cupin superf 79.6 24 0.00051 28.2 9.2 78 95-176 41-125 (139)
106 cd00038 CAP_ED effector domain 75.5 13 0.00028 26.1 6.3 54 98-154 18-71 (115)
107 COG1482 ManA Phosphomannose is 73.0 22 0.00048 32.3 8.2 59 94-163 241-299 (312)
108 PRK10402 DNA-binding transcrip 72.9 13 0.00028 31.2 6.5 54 99-155 33-86 (226)
109 PLN02868 acyl-CoA thioesterase 69.1 18 0.0004 33.6 7.1 53 98-154 32-84 (413)
110 TIGR00218 manA mannose-6-phosp 67.4 3 6.4E-05 37.3 1.4 19 143-161 152-170 (302)
111 PF07172 GRP: Glycine rich pro 66.9 7.7 0.00017 29.0 3.4 9 1-9 1-9 (95)
112 PF04115 Ureidogly_hydro: Urei 66.7 33 0.00072 28.0 7.4 66 110-175 74-143 (165)
113 PHA02984 hypothetical protein; 65.8 43 0.00094 29.8 8.2 51 117-172 92-144 (286)
114 KOG4281 Uncharacterized conser 64.9 3 6.5E-05 35.9 0.9 42 91-132 71-112 (236)
115 KOG2130 Phosphatidylserine-spe 64.7 11 0.00024 34.4 4.5 46 139-184 260-305 (407)
116 PRK03606 ureidoglycolate hydro 64.3 46 0.001 27.3 7.8 65 109-173 72-138 (162)
117 COG1482 ManA Phosphomannose is 63.4 6.2 0.00013 35.8 2.7 21 143-163 159-179 (312)
118 PHA02890 hypothetical protein; 63.1 64 0.0014 28.6 8.7 45 116-164 90-136 (278)
119 COG3717 KduI 5-keto 4-deoxyuro 62.5 32 0.0007 30.2 6.7 86 90-180 172-263 (278)
120 PRK00924 5-keto-4-deoxyuronate 62.1 48 0.001 29.6 8.0 51 115-173 72-125 (276)
121 PRK15131 mannose-6-phosphate i 61.6 8.5 0.00018 35.9 3.4 22 142-163 237-258 (389)
122 COG0664 Crp cAMP-binding prote 59.9 38 0.00083 26.9 6.7 57 97-156 23-79 (214)
123 PF04962 KduI: KduI/IolB famil 59.3 36 0.00078 30.0 6.7 78 79-167 14-99 (261)
124 PRK15186 AraC family transcrip 58.7 35 0.00076 30.4 6.7 46 117-169 39-84 (291)
125 PF04622 ERG2_Sigma1R: ERG2 an 57.5 54 0.0012 28.2 7.3 93 104-211 110-205 (216)
126 PRK11161 fumarate/nitrate redu 57.1 46 0.00099 27.7 6.9 52 100-154 40-91 (235)
127 TIGR03697 NtcA_cyano global ni 57.1 35 0.00076 27.3 6.0 37 116-154 11-47 (193)
128 PRK10202 ebgC cryptic beta-D-g 56.7 40 0.00087 27.0 6.1 54 109-163 58-127 (149)
129 COG2731 EbgC Beta-galactosidas 54.5 51 0.0011 26.9 6.3 61 107-167 60-137 (154)
130 TIGR00022 uncharacterized prot 53.8 83 0.0018 24.8 7.4 56 107-162 60-133 (142)
131 PF04074 DUF386: Domain of unk 53.6 44 0.00095 26.6 5.9 69 95-163 46-134 (153)
132 PF13640 2OG-FeII_Oxy_3: 2OG-F 52.2 33 0.00071 24.6 4.6 64 100-165 4-86 (100)
133 KOG1417 Homogentisate 1,2-diox 50.1 1.8E+02 0.0038 26.7 9.5 62 108-177 147-208 (446)
134 COG3718 IolB Uncharacterized e 46.6 1.8E+02 0.0039 25.6 8.8 86 79-168 16-103 (270)
135 PRK13395 ureidoglycolate hydro 44.0 1.4E+02 0.0031 24.7 7.5 67 109-175 72-141 (171)
136 PRK14585 pgaD putative PGA bio 43.4 26 0.00056 28.0 2.9 25 195-219 88-112 (137)
137 PF13464 DUF4115: Domain of un 42.8 1.1E+02 0.0025 21.2 7.4 51 123-177 5-55 (77)
138 KOG2131 Uncharacterized conser 42.6 28 0.00061 32.4 3.4 72 95-168 196-294 (427)
139 PRK09392 ftrB transcriptional 42.6 55 0.0012 27.3 5.1 52 99-154 32-83 (236)
140 PF13994 PgaD: PgaD-like prote 41.6 31 0.00067 27.2 3.2 24 196-219 100-123 (138)
141 KOG3416 Predicted nucleic acid 40.0 1.2E+02 0.0026 24.1 6.1 66 87-164 11-80 (134)
142 PRK14584 hmsS hemin storage sy 39.5 35 0.00075 27.9 3.2 25 195-219 97-121 (153)
143 PF02787 CPSase_L_D3: Carbamoy 38.2 32 0.00069 26.8 2.7 26 196-221 72-97 (123)
144 PF13348 Y_phosphatase3C: Tyro 37.3 34 0.00074 23.2 2.5 24 197-220 44-67 (68)
145 PF10365 DUF2436: Domain of un 35.7 49 0.0011 26.8 3.4 38 25-64 105-142 (161)
146 PLN03192 Voltage-dependent pot 34.4 90 0.0019 31.8 5.9 53 96-152 396-448 (823)
147 COG1741 Pirin-related protein 34.4 3.4E+02 0.0073 24.2 12.1 43 86-130 165-207 (276)
148 PF06719 AraC_N: AraC-type tra 33.5 1.9E+02 0.0041 22.9 6.7 70 94-175 5-77 (155)
149 PF14801 GCD14_N: tRNA methylt 32.3 1E+02 0.0022 20.7 4.0 36 128-166 11-46 (54)
150 PLN02288 mannose-6-phosphate i 32.3 34 0.00075 32.0 2.4 20 144-163 253-272 (394)
151 PF04202 Mfp-3: Foot protein 3 30.8 47 0.001 23.3 2.3 25 1-26 1-25 (71)
152 PRK02290 3-dehydroquinate synt 30.5 1.5E+02 0.0033 27.4 6.1 82 74-162 250-334 (344)
153 PF05721 PhyH: Phytanoyl-CoA d 29.9 94 0.002 24.5 4.4 30 140-169 178-208 (211)
154 KOG2132 Uncharacterized conser 29.3 23 0.00049 32.5 0.6 82 82-164 237-348 (355)
155 KOG0500 Cyclic nucleotide-gate 28.5 1.1E+02 0.0024 29.7 5.0 32 116-152 348-379 (536)
156 PF01959 DHQS: 3-dehydroquinat 27.0 1.8E+02 0.004 26.9 6.0 83 74-163 260-345 (354)
157 PF13384 HTH_23: Homeodomain-l 26.8 69 0.0015 19.9 2.5 26 196-221 17-42 (50)
158 PHA00672 hypothetical protein 24.7 3.6E+02 0.0079 21.5 6.8 67 94-170 46-112 (152)
159 TIGR02408 ectoine_ThpD ectoine 24.2 98 0.0021 27.1 3.7 38 143-180 212-251 (277)
160 KOG0498 K+-channel ERG and rel 24.1 1.3E+02 0.0029 30.5 5.0 48 101-152 446-493 (727)
161 KOG1633 F-box protein JEMMA an 24.0 86 0.0019 32.1 3.7 41 139-179 193-233 (776)
162 KOG1356 Putative transcription 23.4 31 0.00066 35.4 0.4 62 102-166 762-823 (889)
163 PF08194 DIM: DIM protein; In 22.3 78 0.0017 19.5 1.9 10 40-50 24-33 (36)
164 PF00325 Crp: Bacterial regula 21.0 1E+02 0.0022 18.3 2.2 25 197-221 3-27 (32)
No 1
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.96 E-value=2.8e-28 Score=222.69 Aligned_cols=163 Identities=17% Similarity=0.195 Sum_probs=146.3
Q ss_pred CcccCCCCCCCCCCeeeecCCCCCCccCCCCeeEEEccccccCcccccceEEEEEEEcCCCcCCCccCCCCcEEEEEEec
Q 048097 46 GKFCKDPKLAKAEDFFLSGLDKPGNTENRLGFNVTNANVEQIPGLNTLGTSAVRIDYAPYGQNPPHTHPRATEILVVLEG 125 (224)
Q Consensus 46 g~~ck~p~~~~~~df~f~~~~~~~~~~~~~g~~v~~~~~~~~p~L~~lgis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G 125 (224)
..+-+.+....++.|+|++...++.. ..|++++.+++.+||+++ ++++++++++||+++++|||++++|++||++|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~p~~--~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G 275 (367)
T TIGR03404 200 QEAVTGPAGEVPGPFTYHLSEQKPKQ--VPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQG 275 (367)
T ss_pred cccCcCCCCCCCccEEEEhhhCCcee--cCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEE
Confidence 34445566777788999998888744 567789999999999988 58999999999999999999999999999999
Q ss_pred EEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEEeCCCCceeechhhhhcCCCCCCHHHHHhh
Q 048097 126 TLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFAGFSSQFPGVITIADTVFGANPPINPDFLGKA 205 (224)
Q Consensus 126 ~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~~~~s~~pg~~~~~~~lf~~~p~~p~~vLa~a 205 (224)
++++++.+++ ++..++.+++||+++||+|..|+++|.|+++++++++|++..++.+.+++|+.. +|++||+++
T Consensus 276 ~~~~~v~d~~---g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~~~l~~----~p~~vl~~~ 348 (367)
T TIGR03404 276 QARMTVFAAG---GNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLNQWLAL----TPPQLVAAH 348 (367)
T ss_pred EEEEEEEecC---CcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHHHHHhh----CCHHHHHHH
Confidence 9999998776 455578999999999999999999999999999999999999999999999754 999999999
Q ss_pred cCCCHHHHHHhhhh
Q 048097 206 FQLDPKIVKDLQDK 219 (224)
Q Consensus 206 f~~~~~~v~~l~~~ 219 (224)
|+++++++++|++.
T Consensus 349 ~~~~~~~~~~l~~~ 362 (367)
T TIGR03404 349 LNLDDEVIDSLKKE 362 (367)
T ss_pred hCcCHHHHHhcccc
Confidence 99999999999975
No 2
>PLN00212 glutelin; Provisional
Probab=99.93 E-value=3.9e-25 Score=207.44 Aligned_cols=146 Identities=21% Similarity=0.277 Sum_probs=123.1
Q ss_pred CccCCCCeeEEEccccccCcccccceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCC
Q 048097 70 NTENRLGFNVTNANVEQIPGLNTLGTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKG 149 (224)
Q Consensus 70 ~~~~~~g~~v~~~~~~~~p~L~~lgis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~G 149 (224)
++.++.+++++.+++.+||+|+++|+++.+++|.+|+|.+||||++|+|++||++|+++++|+++++ ++++..+|++|
T Consensus 323 d~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g--~~vf~~~L~~G 400 (493)
T PLN00212 323 DTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNG--KTVFNGVLRPG 400 (493)
T ss_pred CccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCC--CEEEEEEEcCC
Confidence 4457888899999999999999999999999999999999999999999999999999999998774 88999999999
Q ss_pred CEEEEcCCCeeEEEeCCCCcEEEEEEEeCCCCceeech--hhhhcCCCCCCHHHHHhhcCCCHHHHHHhhhhhc
Q 048097 150 DVFVFPIGLIHFQVNIGKTSAVAFAGFSSQFPGVITIA--DTVFGANPPINPDFLGKAFQLDPKIVKDLQDKFI 221 (224)
Q Consensus 150 Dv~v~P~G~~H~~~N~G~~~a~~l~~~~s~~pg~~~~~--~~lf~~~p~~p~~vLa~af~~~~~~v~~l~~~~~ 221 (224)
|+++||+|.+|.... +++...+++.-.+.++-...++ .++|+. +|.+||+++|+++.+++++||..+.
T Consensus 401 dvfVVPqg~~v~~~A-~~egfe~v~F~tna~~~~s~laG~~Sv~~a---lp~eVla~Af~is~eea~~lk~n~~ 470 (493)
T PLN00212 401 QLLIIPQHYAVLKKA-EREGCQYIAFKTNANAMVSHIAGKNSIFRA---LPVDVIANAYRISREEARRLKNNRG 470 (493)
T ss_pred CEEEECCCCeEEEee-cCCceEEEEeecCCCccccccccHHHHHHh---CCHHHHHHHcCCCHHHHHHHHhccc
Confidence 999999999997654 3444555544333333222222 578884 9999999999999999999998754
No 3
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.91 E-value=1.2e-23 Score=192.23 Aligned_cols=146 Identities=20% Similarity=0.234 Sum_probs=124.5
Q ss_pred CeeeecCCCCCCccCCCCeeEEEccccccCcccccceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCC
Q 048097 59 DFFLSGLDKPGNTENRLGFNVTNANVEQIPGLNTLGTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLN 138 (224)
Q Consensus 59 df~f~~~~~~~~~~~~~g~~v~~~~~~~~p~L~~lgis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~ 138 (224)
-|.|+.-.++. ..|++++.++..+||++++ +++.+++++||+++++|||. +.|++||++|++++++++++
T Consensus 37 ~~~~~~~~~~~----~~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH~-~~E~~yVl~G~~~v~~~d~~--- 106 (367)
T TIGR03404 37 KWSFSDSHNRL----ENGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWHK-EAEWAYVLYGSCRITAVDEN--- 106 (367)
T ss_pred eeeeccccCcc----ccCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccCC-CceEEEEEeeEEEEEEEcCC---
Confidence 45665443332 3577899999999999996 79999999999999999995 78999999999999999876
Q ss_pred CeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEEeCCC---CceeechhhhhcCCCCCCHHHHHhhcCCCHHHHHH
Q 048097 139 NTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFAGFSSQF---PGVITIADTVFGANPPINPDFLGKAFQLDPKIVKD 215 (224)
Q Consensus 139 ~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~~~~s~~---pg~~~~~~~lf~~~p~~p~~vLa~af~~~~~~v~~ 215 (224)
++.+.+.|++||+++||+|.+|+++|.+ +.+.++.+|++.. +..+.++.+ |++ +|++||+++|+++++++++
T Consensus 107 g~~~~~~L~~GD~~~fP~g~~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~~~~-l~~---~p~~Vla~~f~l~~~~~~~ 181 (367)
T TIGR03404 107 GRNYIDDVGAGDLWYFPPGIPHSLQGLD-EGCEFLLVFDDGNFSEDGTFLVTDW-LAH---TPKDVLAKNFGVPESAFDN 181 (367)
T ss_pred CcEEEeEECCCCEEEECCCCeEEEEECC-CCeEEEEEeCCcccCCcceeeHHHH-HHh---CCHHHHHHHhCCCHHHHHh
Confidence 7877789999999999999999999995 5577888887653 557778887 464 9999999999999999999
Q ss_pred hhhh
Q 048097 216 LQDK 219 (224)
Q Consensus 216 l~~~ 219 (224)
|++.
T Consensus 182 l~~~ 185 (367)
T TIGR03404 182 LPLK 185 (367)
T ss_pred cccc
Confidence 9985
No 4
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.91 E-value=6.8e-24 Score=169.88 Aligned_cols=138 Identities=31% Similarity=0.425 Sum_probs=110.7
Q ss_pred ecCCCCCCccCCCCeeEEEccccccCccccc-ceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCC--CC
Q 048097 63 SGLDKPGNTENRLGFNVTNANVEQIPGLNTL-GTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQL--NN 139 (224)
Q Consensus 63 ~~~~~~~~~~~~~g~~v~~~~~~~~p~L~~l-gis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~--~~ 139 (224)
+.....+.. +..+++++.++..++|++.++ ++++.++.++||++++|||| ++.|+.||++|+++++++.++.. ..
T Consensus 2 n~~~~~~~~-~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~ 79 (144)
T PF00190_consen 2 NLREPRPRV-SNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEF 79 (144)
T ss_dssp ETCSSSEEE-EETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEE
T ss_pred CCCCCCCcc-cCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccc
Confidence 444333333 445678999999999966665 45666677799999999999 89999999999999999987510 01
Q ss_pred eeEEEE--ecCCCEEEEcCCCeeEEEeCCCCcEEEEEEEeCCCCceeechhhhhcCCCCCCHHHHHhhcCCCHHHHH
Q 048097 140 TLIAKV--LNKGDVFVFPIGLIHFQVNIGKTSAVAFAGFSSQFPGVITIADTVFGANPPINPDFLGKAFQLDPKIVK 214 (224)
Q Consensus 140 k~~~~~--l~~GDv~v~P~G~~H~~~N~G~~~a~~l~~~~s~~pg~~~~~~~lf~~~p~~p~~vLa~af~~~~~~v~ 214 (224)
+....+ +++||++++|+|.+||+.|.|+++...+.+|++.+|..+ +|+++++++|++++++++
T Consensus 80 ~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~------------l~~~v~~~~F~~~~~~~~ 144 (144)
T PF00190_consen 80 RDFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ------------LPPEVLAKAFFLSGEEVQ 144 (144)
T ss_dssp EEEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE------------SSHHHHHHHEESSHHHHB
T ss_pred eeeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc------------CCcHHHHHhcCCCcCcCC
Confidence 344555 999999999999999999999888989889988888765 899999999999998763
No 5
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.86 E-value=2.7e-20 Score=149.38 Aligned_cols=135 Identities=38% Similarity=0.568 Sum_probs=115.5
Q ss_pred CCCCeeEEEccccccCcccccceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEE
Q 048097 73 NRLGFNVTNANVEQIPGLNTLGTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF 152 (224)
Q Consensus 73 ~~~g~~v~~~~~~~~p~L~~lgis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~ 152 (224)
+..|+++..++..++|.+++.++.+.+++++||+..++|+|+++.|++||++|++++.+.+..+ ++.+...+++||++
T Consensus 8 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~--~~~~~~~l~~GD~~ 85 (146)
T smart00835 8 SNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNG--NKVYDARLREGDVF 85 (146)
T ss_pred cCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCC--CeEEEEEecCCCEE
Confidence 3456668999999999999999999999999999999999998899999999999999876531 45567899999999
Q ss_pred EEcCCCeeEEEeCCCCcEEEEEEEeCCCCceee---chhhhhcCCCCCCHHHHHhhcCCCHHHH
Q 048097 153 VFPIGLIHFQVNIGKTSAVAFAGFSSQFPGVIT---IADTVFGANPPINPDFLGKAFQLDPKIV 213 (224)
Q Consensus 153 v~P~G~~H~~~N~G~~~a~~l~~~~s~~pg~~~---~~~~lf~~~p~~p~~vLa~af~~~~~~v 213 (224)
++|+|..|+..|.++++++++ ++.+++|..-. -..++|. ++++++++++|+++++++
T Consensus 86 ~ip~g~~H~~~n~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 86 VVPQGHPHFQVNSGDENLEFV-AFNTNDPNRRFFLAGRNSVLR---GLPPEVLAAAFGVSAEEV 145 (146)
T ss_pred EECCCCEEEEEcCCCCCEEEE-EEecCCCCceeEeecccchhh---cCCHHHHHHHhCcChHHc
Confidence 999999999999999999998 57667765421 1235677 599999999999999875
No 6
>PLN00212 glutelin; Provisional
Probab=99.84 E-value=1.1e-19 Score=170.67 Aligned_cols=140 Identities=19% Similarity=0.305 Sum_probs=114.8
Q ss_pred CCeeEEEccccccCcccccceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCC-CC-CCeeE----------
Q 048097 75 LGFNVTNANVEQIPGLNTLGTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSN-QL-NNTLI---------- 142 (224)
Q Consensus 75 ~g~~v~~~~~~~~p~L~~lgis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~-~~-~~k~~---------- 142 (224)
-|+ ++.....+-+.|.+.|++++|++++|+|+++||+| ++++++||++|++.++++.+. ++ -++.+
T Consensus 61 e~G-~~E~~~~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~ 138 (493)
T PLN00212 61 EAG-VTEYFDEKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQ 138 (493)
T ss_pred cCc-eeeecCCCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhhhhccccccccccc
Confidence 344 66677788999999999999999999999999999 699999999999999999642 00 00110
Q ss_pred ----------EEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEEeCCCC--------ceeech-----------------
Q 048097 143 ----------AKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFAGFSSQFP--------GVITIA----------------- 187 (224)
Q Consensus 143 ----------~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~~~~s~~p--------g~~~~~----------------- 187 (224)
.+.|++||++++|+|.+||++|.|+++++++++++..++ ..+.++
T Consensus 139 ~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~~~~ 218 (493)
T PLN00212 139 SQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSIEQH 218 (493)
T ss_pred ccccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCcccccccccccccc
Confidence 158999999999999999999999999998888864432 233333
Q ss_pred --hhhhcCCCCCCHHHHHhhcCCCHHHHHHhhhh
Q 048097 188 --DTVFGANPPINPDFLGKAFQLDPKIVKDLQDK 219 (224)
Q Consensus 188 --~~lf~~~p~~p~~vLa~af~~~~~~v~~l~~~ 219 (224)
.++|+ ++++++|++||+++.++++||+..
T Consensus 219 ~~~nifs---GF~~e~La~Afnv~~e~~~klq~~ 249 (493)
T PLN00212 219 SGQNIFS---GFSTELLSEALGINAQVAKRLQSQ 249 (493)
T ss_pred ccCchhh---cCCHHHHHHHHCCCHHHHHHHhcc
Confidence 24888 699999999999999999999865
No 7
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.80 E-value=4.9e-19 Score=148.86 Aligned_cols=151 Identities=22% Similarity=0.298 Sum_probs=134.4
Q ss_pred CCCCeeeecCCCCCCccCCCCeeEEEccccccCcccccceEEEEEEEcCCCcCCCccCCCCcE--EEEEEecEEEEEEEe
Q 048097 56 KAEDFFLSGLDKPGNTENRLGFNVTNANVEQIPGLNTLGTSAVRIDYAPYGQNPPHTHPRATE--ILVVLEGTLYVGFVT 133 (224)
Q Consensus 56 ~~~df~f~~~~~~~~~~~~~g~~v~~~~~~~~p~L~~lgis~~~v~l~pgg~~ppH~Hp~a~E--i~~Vl~G~~~v~~v~ 133 (224)
..+||+|..+.+.+... |+.+.......+|+- +-..+.+.||++...||||++.| |.||++|++++.+..
T Consensus 49 ~~~~~~yel~~~~~~~~---~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~ 120 (209)
T COG2140 49 KEDDFVYELLESEPGER---GGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQK 120 (209)
T ss_pred CCCceEEEeeccccccc---CCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEc
Confidence 67899999877765442 788999999999986 55778999999999999999999 999999999999887
Q ss_pred CCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEEeCCCCceeechhhhhcCCCCCCHHHHHhhcCCCHHHH
Q 048097 134 SNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFAGFSSQFPGVITIADTVFGANPPINPDFLGKAFQLDPKIV 213 (224)
Q Consensus 134 ~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~~~~s~~pg~~~~~~~lf~~~p~~p~~vLa~af~~~~~~v 213 (224)
++ +++....+++||++++|++..|+..|+|++|++++.++....+....+..++++ ++..+++..++.+...+
T Consensus 121 ~~---G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~~~~~~~----~~~~~~~~~~~~~~~~~ 193 (209)
T COG2140 121 PE---GEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQDYDLIAWLGG----MPPVLVENGLNKNPKYV 193 (209)
T ss_pred CC---CcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCceeeeeehhcc----CCceeeccccccCcccc
Confidence 76 678889999999999999999999999999999999999988999988888776 78889999999998888
Q ss_pred HHhhhhhc
Q 048097 214 KDLQDKFI 221 (224)
Q Consensus 214 ~~l~~~~~ 221 (224)
|.++.++.
T Consensus 194 D~p~~~~~ 201 (209)
T COG2140 194 DVPRIKFA 201 (209)
T ss_pred cCcccccc
Confidence 88877665
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.45 E-value=3.4e-13 Score=94.13 Aligned_cols=70 Identities=29% Similarity=0.432 Sum_probs=62.8
Q ss_pred EEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEE
Q 048097 99 RIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFAGF 176 (224)
Q Consensus 99 ~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~~~ 176 (224)
+++++||+..++|+|+...|++||++|++++.+ + ++ ...+++||.+++|+|..|...|.++++++++.++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~-~-----~~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV-D-----GE--RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEE-T-----TE--EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEE-c-----cE--EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 578999999999999976699999999999984 2 33 5899999999999999999999999999998775
No 9
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.39 E-value=4.4e-12 Score=99.63 Aligned_cols=86 Identities=28% Similarity=0.382 Sum_probs=72.9
Q ss_pred cccCcccccceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEe
Q 048097 85 EQIPGLNTLGTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVN 164 (224)
Q Consensus 85 ~~~p~L~~lgis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N 164 (224)
.-.+...+..+.+.++.++||+..+.|+||...+.+||++|++++++.. . .+.+++||++++|+|..|+..|
T Consensus 33 ~~~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g-----~---~~~l~~Gd~i~ip~g~~H~~~a 104 (131)
T COG1917 33 RVLPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEG-----E---KKELKAGDVIIIPPGVVHGLKA 104 (131)
T ss_pred eeccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEecC-----C---ceEecCCCEEEECCCCeeeecc
Confidence 3444445667899999999999999999996689999999999999862 2 3899999999999999999999
Q ss_pred CCCCcEEEEEEEeC
Q 048097 165 IGKTSAVAFAGFSS 178 (224)
Q Consensus 165 ~G~~~a~~l~~~~s 178 (224)
.++.+.+.++++..
T Consensus 105 ~~~~~~~~l~v~~~ 118 (131)
T COG1917 105 VEDEPMVLLLVFPL 118 (131)
T ss_pred CCCCceeEEEEeee
Confidence 99887666666654
No 10
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.35 E-value=1.2e-11 Score=97.28 Aligned_cols=81 Identities=15% Similarity=0.139 Sum_probs=69.8
Q ss_pred cceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEE-EEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEE
Q 048097 93 LGTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVG-FVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAV 171 (224)
Q Consensus 93 lgis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~-~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~ 171 (224)
.++++.++.++||+..+.|+|.. .|++||++|++++. +.+ ++ .+.|++||++++|++..|.+.|. ++++
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~-----g~--~~~L~aGD~i~~~~~~~H~~~N~--e~~~ 102 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLAT-----GE--VHPIRPGTMYALDKHDRHYLRAG--EDMR 102 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCC-----CE--EEEeCCCeEEEECCCCcEEEEcC--CCEE
Confidence 36799999999999999999975 69999999999998 432 23 48999999999999999999997 8999
Q ss_pred EEEEEeCCCCce
Q 048097 172 AFAGFSSQFPGV 183 (224)
Q Consensus 172 ~l~~~~s~~pg~ 183 (224)
++++++..-+|.
T Consensus 103 ~l~v~tP~~~~~ 114 (125)
T PRK13290 103 LVCVFNPPLTGR 114 (125)
T ss_pred EEEEECCCCCCc
Confidence 999988665554
No 11
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=9.8e-12 Score=97.79 Aligned_cols=82 Identities=29% Similarity=0.240 Sum_probs=72.7
Q ss_pred cceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEE
Q 048097 93 LGTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVA 172 (224)
Q Consensus 93 lgis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~ 172 (224)
...++.++.+.||+-..+|.|.+.+|++||++|++.+.+.+ + ...|++||++++|+|..|...|.|..++.+
T Consensus 34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~------~--~~~v~~gd~~~iP~g~~H~~~N~G~~~L~l 105 (127)
T COG0662 34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGG------E--EVEVKAGDSVYIPAGTPHRVRNTGKIPLVL 105 (127)
T ss_pred CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECC------E--EEEecCCCEEEECCCCcEEEEcCCCcceEE
Confidence 46799999999999999999988899999999999998753 3 589999999999999999999999999999
Q ss_pred EEEEeCCCCc
Q 048097 173 FAGFSSQFPG 182 (224)
Q Consensus 173 l~~~~s~~pg 182 (224)
+.+......+
T Consensus 106 iei~~p~~~~ 115 (127)
T COG0662 106 IEVQSPPYLG 115 (127)
T ss_pred EEEecCCcCC
Confidence 9887655443
No 12
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.32 E-value=3.8e-11 Score=100.89 Aligned_cols=88 Identities=19% Similarity=0.137 Sum_probs=74.8
Q ss_pred cccccceEEEEEEEcCCCc------CCCccCCCC--cEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCee
Q 048097 89 GLNTLGTSAVRIDYAPYGQ------NPPHTHPRA--TEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIH 160 (224)
Q Consensus 89 ~L~~lgis~~~v~l~pgg~------~ppH~Hp~a--~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H 160 (224)
.++..++.+..+.+.||.. .+.|+|+.. .|+.||++|++.+.+.+.+ +......+++||+++||+|..|
T Consensus 62 ~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~---G~~~~~~v~pGd~v~IPpg~~H 138 (191)
T PRK04190 62 EETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPE---GEARWIEMEPGTVVYVPPYWAH 138 (191)
T ss_pred CCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCC---CcEEEEEECCCCEEEECCCCcE
Confidence 4555679999999999996 567999854 4999999999999887654 3445689999999999999999
Q ss_pred EEEeCCCCcEEEEEEEeCC
Q 048097 161 FQVNIGKTSAVAFAGFSSQ 179 (224)
Q Consensus 161 ~~~N~G~~~a~~l~~~~s~ 179 (224)
...|.|++++++++++...
T Consensus 139 ~~iN~G~epl~fl~v~p~~ 157 (191)
T PRK04190 139 RSVNTGDEPLVFLACYPAD 157 (191)
T ss_pred EeEECCCCCEEEEEEEcCC
Confidence 9999999999999987643
No 13
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.15 E-value=2.5e-10 Score=92.13 Aligned_cols=82 Identities=23% Similarity=0.220 Sum_probs=68.5
Q ss_pred ccCcccccceEEEEEEEcCCCc-CCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCC--CeeEE
Q 048097 86 QIPGLNTLGTSAVRIDYAPYGQ-NPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIG--LIHFQ 162 (224)
Q Consensus 86 ~~p~L~~lgis~~~v~l~pgg~-~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G--~~H~~ 162 (224)
.+-||...|| ....++||+. ...|||...+|++|||+|++++.+.+ . ...|++||++-||+| ..|..
T Consensus 35 ~~~Gl~~fGv--n~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~-----~---e~~lrpGD~~gFpAG~~~aHhl 104 (161)
T COG3837 35 DALGLKRFGV--NLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDG-----G---ETRLRPGDSAGFPAGVGNAHHL 104 (161)
T ss_pred hhcChhhccc--ceEEeCCCCccccccccccCceEEEEEcCceEEEECC-----e---eEEecCCceeeccCCCcceeEE
Confidence 4556665444 4556899995 79999999999999999999998653 2 389999999999999 99999
Q ss_pred EeCCCCcEEEEEEEe
Q 048097 163 VNIGKTSAVAFAGFS 177 (224)
Q Consensus 163 ~N~G~~~a~~l~~~~ 177 (224)
.|.|+..++.+++=+
T Consensus 105 iN~s~~~~~yL~vG~ 119 (161)
T COG3837 105 INRSDVILRYLEVGT 119 (161)
T ss_pred eecCCceEEEEEecc
Confidence 999999999997654
No 14
>PRK11171 hypothetical protein; Provisional
Probab=99.12 E-value=1.5e-09 Score=95.49 Aligned_cols=108 Identities=18% Similarity=0.085 Sum_probs=81.2
Q ss_pred CCCCCCCCCeeeecCCCCCCccCCCCeeEEEccccccCcccccceEEEEEEEcCCCcCCCccCC-CCcEEEEEEecEEEE
Q 048097 51 DPKLAKAEDFFLSGLDKPGNTENRLGFNVTNANVEQIPGLNTLGTSAVRIDYAPYGQNPPHTHP-RATEILVVLEGTLYV 129 (224)
Q Consensus 51 ~p~~~~~~df~f~~~~~~~~~~~~~g~~v~~~~~~~~p~L~~lgis~~~v~l~pgg~~ppH~Hp-~a~Ei~~Vl~G~~~v 129 (224)
+.+.+++++.+.+.+..-. +..++..... . .+.++.+.+++++||+....|.|+ ...|++||++|++++
T Consensus 27 ~~a~~~p~~~v~~~lp~~~------~~~~~~L~~~---~-~~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v 96 (266)
T PRK11171 27 AYAVIPPDDIVTSVLPGWE------NTRAWVLARP---G-LGATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITL 96 (266)
T ss_pred CeEEECCcCEEeecCCCCC------CeEEEEEeCC---C-CCCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEE
Confidence 3455566666666553222 2334433332 1 144689999999999987777775 568999999999999
Q ss_pred EEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEE
Q 048097 130 GFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFAGF 176 (224)
Q Consensus 130 ~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~~~ 176 (224)
.+. ++ +..|++||.++||++..|.+.|.|+++++++++.
T Consensus 97 ~~~------g~--~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~ 135 (266)
T PRK11171 97 TLE------GK--THALSEGGYAYLPPGSDWTLRNAGAEDARFHWIR 135 (266)
T ss_pred EEC------CE--EEEECCCCEEEECCCCCEEEEECCCCCEEEEEEE
Confidence 864 33 5899999999999999999999999999998875
No 15
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.09 E-value=7.5e-10 Score=104.54 Aligned_cols=78 Identities=23% Similarity=0.250 Sum_probs=70.3
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEE
Q 048097 94 GTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAF 173 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l 173 (224)
++.+.++.++||+..++|+|+...|.+||++|++++.+. ++ ...|++||+++||+|.+|.+.|.|+++++++
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~d------g~--~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i 446 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIG------DE--TLLLTENESTYIPLGVIHRLENPGKIPLELI 446 (468)
T ss_pred CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEEC------CE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEE
Confidence 688999999999999999998889999999999999864 33 4899999999999999999999999999999
Q ss_pred EEEeCC
Q 048097 174 AGFSSQ 179 (224)
Q Consensus 174 ~~~~s~ 179 (224)
++...+
T Consensus 447 ~v~~~~ 452 (468)
T TIGR01479 447 EVQSGS 452 (468)
T ss_pred EEEcCC
Confidence 987633
No 16
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.08 E-value=1.2e-09 Score=90.82 Aligned_cols=76 Identities=18% Similarity=0.194 Sum_probs=64.3
Q ss_pred cceEEEEEEEcCCCcC-CCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEE
Q 048097 93 LGTSAVRIDYAPYGQN-PPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAV 171 (224)
Q Consensus 93 lgis~~~v~l~pgg~~-ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~ 171 (224)
..+.+.++.++||+.. +.|+|+ ..|++||++|++++.+.+ + .+.|++||.++||.+.+|.+.|.|++++.
T Consensus 105 ~~~~~~~~~~~pg~~~~~~~~h~-~~E~~~Vl~G~~~~~~~~------~--~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~ 175 (185)
T PRK09943 105 RTLAMIFETYQPGTTTGERIKHQ-GEEIGTVLEGEIVLTING------Q--DYHLVAGQSYAINTGIPHSFSNTSAGICR 175 (185)
T ss_pred CeeEEEEEEccCCCCcccccccC-CcEEEEEEEeEEEEEECC------E--EEEecCCCEEEEcCCCCeeeeCCCCCCeE
Confidence 3567778889999864 466776 699999999999998742 3 48999999999999999999999999999
Q ss_pred EEEEEe
Q 048097 172 AFAGFS 177 (224)
Q Consensus 172 ~l~~~~ 177 (224)
++++..
T Consensus 176 ~l~~~~ 181 (185)
T PRK09943 176 IISAHT 181 (185)
T ss_pred EEEEeC
Confidence 988753
No 17
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=1.3e-09 Score=84.26 Aligned_cols=84 Identities=23% Similarity=0.287 Sum_probs=74.5
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCee-EEEEecCCCEEEEcCCCeeEEEeCCCCcEEE
Q 048097 94 GTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTL-IAKVLNKGDVFVFPIGLIHFQVNIGKTSAVA 172 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~-~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~ 172 (224)
+|.+-.++++||.....|.|.+.+-.+||++|+..+++. +|+ +..++++||.|+||+|++|.-.|.+++++.+
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G------~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~ 118 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYG------NRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSA 118 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeec------cceeeeEEecCCCeEEcCCCCCCcccccCCCCeEE
Confidence 788999999999999999999888899999999999875 454 3568899999999999999999999999999
Q ss_pred EEEEeCCCCce
Q 048097 173 FAGFSSQFPGV 183 (224)
Q Consensus 173 l~~~~s~~pg~ 183 (224)
+.+.+..|+..
T Consensus 119 vIaRsDp~~~E 129 (142)
T COG4101 119 VIARSDPNPQE 129 (142)
T ss_pred EEEccCCCCCc
Confidence 98887666653
No 18
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.06 E-value=1.2e-09 Score=103.43 Aligned_cols=77 Identities=25% Similarity=0.213 Sum_probs=69.4
Q ss_pred cceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEE
Q 048097 93 LGTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVA 172 (224)
Q Consensus 93 lgis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~ 172 (224)
.++.+.+++++||+....|+|...+|.+||++|++++.+.+ + ++.|++||.++||+|.+|.+.|.|++++++
T Consensus 383 ~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg------~--~~~L~~GDSi~ip~g~~H~~~N~g~~~l~i 454 (478)
T PRK15460 383 DRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDG------D--IKLLGENESIYIPLGATHCLENPGKIPLDL 454 (478)
T ss_pred CcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECC------E--EEEecCCCEEEECCCCcEEEEcCCCCCEEE
Confidence 36889999999999888888877889999999999998753 3 589999999999999999999999999999
Q ss_pred EEEEe
Q 048097 173 FAGFS 177 (224)
Q Consensus 173 l~~~~ 177 (224)
+++..
T Consensus 455 I~V~~ 459 (478)
T PRK15460 455 IEVRS 459 (478)
T ss_pred EEEEc
Confidence 99864
No 19
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=98.99 E-value=3.7e-09 Score=85.79 Aligned_cols=77 Identities=26% Similarity=0.237 Sum_probs=69.8
Q ss_pred cceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEE
Q 048097 93 LGTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVA 172 (224)
Q Consensus 93 lgis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~ 172 (224)
-+..+-++.+.||..+..|.|...+|..+|++|++.+.+. ++ .+.+++||.+++|+|..|.+.|.|..++.+
T Consensus 61 ~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~------~~--~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~ 132 (151)
T PF01050_consen 61 EGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLD------DE--EFTLKEGDSVYIPRGAKHRIENPGKTPLEI 132 (151)
T ss_pred CCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEEC------CE--EEEEcCCCEEEECCCCEEEEECCCCcCcEE
Confidence 3678899999999999999999999999999999999874 33 489999999999999999999999999999
Q ss_pred EEEEe
Q 048097 173 FAGFS 177 (224)
Q Consensus 173 l~~~~ 177 (224)
+-+-.
T Consensus 133 IEVq~ 137 (151)
T PF01050_consen 133 IEVQT 137 (151)
T ss_pred EEEec
Confidence 97754
No 20
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.98 E-value=4.4e-09 Score=92.33 Aligned_cols=73 Identities=15% Similarity=0.048 Sum_probs=62.9
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEE
Q 048097 94 GTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAF 173 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l 173 (224)
++.+.+++++||+.++.|.|..-+|.+|||+|++.+.+. ++ ...+++||++++|++.+|+++|.|++++++|
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~------g~--~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l 249 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLD------NN--WVPVEAGDYIWMGAYCPQACYAGGRGEFRYL 249 (260)
T ss_pred CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEEC------CE--EEEecCCCEEEECCCCCEEEEecCCCcEEEE
Confidence 678888999999999964443468899999999999764 33 5899999999999999999999999999887
Q ss_pred E
Q 048097 174 A 174 (224)
Q Consensus 174 ~ 174 (224)
.
T Consensus 250 ~ 250 (260)
T TIGR03214 250 L 250 (260)
T ss_pred E
Confidence 4
No 21
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.93 E-value=9.2e-09 Score=90.30 Aligned_cols=75 Identities=19% Similarity=0.134 Sum_probs=64.7
Q ss_pred ceEEEEEEEcCCCcC-CCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEE
Q 048097 94 GTSAVRIDYAPYGQN-PPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVA 172 (224)
Q Consensus 94 gis~~~v~l~pgg~~-ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~ 172 (224)
.+.+.+++++||+-. .+|.|+...|++||++|++++.+. ++ ++.|++||.+++|+|..|.+.|.+++++++
T Consensus 57 ~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~------g~--~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~ 128 (260)
T TIGR03214 57 TFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAE------GE--THELREGGYAYLPPGSKWTLANAQAEDARF 128 (260)
T ss_pred cEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEEC------CE--EEEECCCCEEEECCCCCEEEEECCCCCEEE
Confidence 589999999998754 566677668999999999999864 23 479999999999999999999999999999
Q ss_pred EEEE
Q 048097 173 FAGF 176 (224)
Q Consensus 173 l~~~ 176 (224)
+++-
T Consensus 129 l~v~ 132 (260)
T TIGR03214 129 FLYK 132 (260)
T ss_pred EEEE
Confidence 8765
No 22
>PRK11171 hypothetical protein; Provisional
Probab=98.89 E-value=9.8e-09 Score=90.38 Aligned_cols=73 Identities=18% Similarity=0.036 Sum_probs=63.9
Q ss_pred ceEEEEEEEcCCCcCCCc-cCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEE
Q 048097 94 GTSAVRIDYAPYGQNPPH-THPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVA 172 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH-~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~ 172 (224)
++.+.+++++||+.++.| .| ...|.+||++|++++.+. ++ ++.|++||+++||.+..|++.|.|++++++
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~-~~ee~i~Vl~G~~~~~~~------~~--~~~l~~GD~i~~~~~~~h~~~N~g~~~~~y 253 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETH-VMEHGLYVLEGKGVYRLN------ND--WVEVEAGDFIWMRAYCPQACYAGGPGPFRY 253 (266)
T ss_pred CcEEEEEEECCCCEEccCcCC-CceEEEEEEeCEEEEEEC------CE--EEEeCCCCEEEECCCCCEEEECCCCCcEEE
Confidence 468999999999998885 55 578999999999999864 33 589999999999999999999999999988
Q ss_pred EEE
Q 048097 173 FAG 175 (224)
Q Consensus 173 l~~ 175 (224)
+..
T Consensus 254 l~~ 256 (266)
T PRK11171 254 LLY 256 (266)
T ss_pred EEE
Confidence 853
No 23
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.73 E-value=1.7e-07 Score=75.26 Aligned_cols=100 Identities=19% Similarity=0.211 Sum_probs=60.2
Q ss_pred cCcccccceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCC-CCeeEEEEecCCCEEEEcCCCeeEEEeC
Q 048097 87 IPGLNTLGTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQL-NNTLIAKVLNKGDVFVFPIGLIHFQVNI 165 (224)
Q Consensus 87 ~p~L~~lgis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~-~~k~~~~~l~~GDv~v~P~G~~H~~~N~ 165 (224)
.-|++ .+.+.+-+++||...|+|-|. .+|+++|++|+++..+...... .++-.++.+-+++.|.||.+..|...|+
T Consensus 38 ~hGmk--evEVwlQTfAPG~~TPiHRHs-CEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT 114 (167)
T PF02041_consen 38 LHGMK--EVEVWLQTFAPGSATPIHRHS-CEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNT 114 (167)
T ss_dssp HH--S--SEEEEEEEE-TT-B--EEEES-S-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE--
T ss_pred hcCce--eeeEEeeeecCCCCCCCcccc-ccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecC
Confidence 34555 578899999999999999996 8999999999999988754310 1334468899999999999999999999
Q ss_pred C-CCcEEEEEEEeCCCCceeechhh
Q 048097 166 G-KTSAVAFAGFSSQFPGVITIADT 189 (224)
Q Consensus 166 G-~~~a~~l~~~~s~~pg~~~~~~~ 189 (224)
+ .+++.++++++..--..+.+.+|
T Consensus 115 ~e~eDlqvlViiSrpPvkvf~y~dw 139 (167)
T PF02041_consen 115 NEHEDLQVLVIISRPPVKVFIYDDW 139 (167)
T ss_dssp -SSS-EEEEEEEESSS--EEEESST
T ss_pred CCCcceEEEEEecCCCeEEEEeccc
Confidence 9 58898887775444445555665
No 24
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.69 E-value=2.5e-07 Score=77.22 Aligned_cols=86 Identities=24% Similarity=0.232 Sum_probs=56.8
Q ss_pred ccccceEEEEEEEcCCCc------CCCccCCC------CcEEEEEEecEEEEEEEeCCCCCC----eeEEEEecCCCEEE
Q 048097 90 LNTLGTSAVRIDYAPYGQ------NPPHTHPR------ATEILVVLEGTLYVGFVTSNQLNN----TLIAKVLNKGDVFV 153 (224)
Q Consensus 90 L~~lgis~~~v~l~pgg~------~ppH~Hp~------a~Ei~~Vl~G~~~v~~v~~~~~~~----k~~~~~l~~GDv~v 153 (224)
|...++......+.||-+ ..=|+|+. ..|+.+|++|++.+-+-+.+ + +.+...+++||+++
T Consensus 45 ~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~---~~~~~~~~~v~~~~G~~v~ 121 (182)
T PF06560_consen 45 LQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEE---GDDVGDVIAVEAKPGDVVY 121 (182)
T ss_dssp -----EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TT---S-----EEEEEE-TTEEEE
T ss_pred ceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecC---CCcceeEEEEEeCCCCEEE
Confidence 344467788888888754 35699998 78999999999999888765 4 56778999999999
Q ss_pred EcCCCeeEEEeCCCCcEEEEEEEeC
Q 048097 154 FPIGLIHFQVNIGKTSAVAFAGFSS 178 (224)
Q Consensus 154 ~P~G~~H~~~N~G~~~a~~l~~~~s 178 (224)
||++..|...|+|++++++.....+
T Consensus 122 IPp~yaH~tIN~g~~~L~~~~~~~~ 146 (182)
T PF06560_consen 122 IPPGYAHRTINTGDEPLVFAAWVPR 146 (182)
T ss_dssp E-TT-EEEEEE-SSS-EEEEEEEET
T ss_pred ECCCceEEEEECCCCcEEEEEEEec
Confidence 9999999999999999988877753
No 25
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.51 E-value=7.7e-07 Score=73.75 Aligned_cols=66 Identities=18% Similarity=0.350 Sum_probs=53.3
Q ss_pred cCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEE
Q 048097 103 APYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFAG 175 (224)
Q Consensus 103 ~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~~ 175 (224)
.||.....|+|+ ..|++|+++|++++.+.+. ++.....|++||++++|+|..|..... +..+.+.+
T Consensus 42 Gpn~r~d~H~~~-tdE~FyqleG~~~l~v~d~----g~~~~v~L~eGd~fllP~gvpHsP~r~--~~tv~Lvi 107 (177)
T PRK13264 42 GPNARTDFHYDP-GEEFFYQLEGDMYLKVQED----GKRRDVPIREGEMFLLPPHVPHSPQRE--AGSIGLVI 107 (177)
T ss_pred cCCcccccccCC-CceEEEEECCeEEEEEEcC----CceeeEEECCCCEEEeCCCCCcCCccC--CCeEEEEE
Confidence 667778889998 6999999999999999874 444468999999999999999998653 44444443
No 26
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.49 E-value=8.8e-07 Score=65.25 Aligned_cols=74 Identities=27% Similarity=0.353 Sum_probs=55.1
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEE
Q 048097 94 GTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAF 173 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l 173 (224)
.++...++|+||+.-++----+..-++||++|.+++++.+ . +..+++||++.+|+|-.-.+.|.++++|+++
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~------~--~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~Lf 82 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHE------T--SFVVTKGGSFQVPRGNYYSIKNIGNEEAKLF 82 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETT------E--EEEEETT-EEEE-TT-EEEEEE-SSS-EEEE
T ss_pred CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcC------c--EEEEeCCCEEEECCCCEEEEEECCCCcEEEE
Confidence 4688899999999865543335789999999999999853 2 4899999999999999999999999999887
Q ss_pred EE
Q 048097 174 AG 175 (224)
Q Consensus 174 ~~ 175 (224)
-+
T Consensus 83 F~ 84 (85)
T PF11699_consen 83 FV 84 (85)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 27
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.45 E-value=1.7e-06 Score=70.68 Aligned_cols=66 Identities=18% Similarity=0.369 Sum_probs=51.2
Q ss_pred cCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEE
Q 048097 103 APYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFAG 175 (224)
Q Consensus 103 ~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~~ 175 (224)
.||.....|.|+ ..|++|+++|++.+.+.+. ++.....|++||++++|+|..|...-.+ ..+.+.+
T Consensus 36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~----g~~~~v~L~eGd~flvP~gvpHsP~r~~--~t~~LvI 101 (159)
T TIGR03037 36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTEE----GKREDVPIREGDIFLLPPHVPHSPQRPA--GSIGLVI 101 (159)
T ss_pred CCCCCcccccCC-CceEEEEEcceEEEEEEcC----CcEEEEEECCCCEEEeCCCCCcccccCC--CcEEEEE
Confidence 455556789887 7999999999999998764 3444689999999999999999987643 3444433
No 28
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.36 E-value=1.9e-06 Score=73.73 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=62.1
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEE
Q 048097 95 TSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFA 174 (224)
Q Consensus 95 is~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~ 174 (224)
..+..++++||+.+|.|.|. +.|+++||+|+.. ++. ..+.+||++..|.|..|...+.++++.++++
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~-G~E~tlVLeG~f~----de~--------g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~ 193 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHK-GFELTLVLHGAFS----DET--------GVYGVGDFEEADGSVQHQPRTVSGGDCLCLA 193 (215)
T ss_pred cEEEEEEECCCCccCCCcCC-CcEEEEEEEEEEE----cCC--------CccCCCeEEECCCCCCcCcccCCCCCeEEEE
Confidence 46778899999999999995 7899999999953 332 4689999999999999999999889999998
Q ss_pred EEeCC
Q 048097 175 GFSSQ 179 (224)
Q Consensus 175 ~~~s~ 179 (224)
+.+.+
T Consensus 194 v~dap 198 (215)
T TIGR02451 194 VLDAP 198 (215)
T ss_pred EecCC
Confidence 87644
No 29
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.35 E-value=1.7e-06 Score=63.89 Aligned_cols=66 Identities=26% Similarity=0.403 Sum_probs=51.4
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEE
Q 048097 94 GTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAF 173 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l 173 (224)
|-.+..++++||+..|.|.|+ +.|.+|||+|++.. . + ..+.+||.++.|+|..|...- .+.+.++
T Consensus 23 g~~~~L~r~~pG~~~p~H~H~-g~ee~~VLeG~~~d----~----~----~~~~~G~~~~~p~g~~h~~~s--~~gc~~~ 87 (91)
T PF12973_consen 23 GERVSLLRLEPGASLPRHRHP-GGEEILVLEGELSD----G----D----GRYGAGDWLRLPPGSSHTPRS--DEGCLIL 87 (91)
T ss_dssp TEEEEEEEE-TTEEEEEEEES-S-EEEEEEECEEEE----T----T----CEEETTEEEEE-TTEEEEEEE--SSCEEEE
T ss_pred cCEEEEEEECCCCCcCccCCC-CcEEEEEEEEEEEE----C----C----ccCCCCeEEEeCCCCccccCc--CCCEEEE
Confidence 568888999999999999998 57888999999964 2 2 356999999999999999883 4556655
Q ss_pred E
Q 048097 174 A 174 (224)
Q Consensus 174 ~ 174 (224)
.
T Consensus 88 v 88 (91)
T PF12973_consen 88 V 88 (91)
T ss_dssp E
T ss_pred E
Confidence 3
No 30
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.30 E-value=3.1e-06 Score=64.38 Aligned_cols=64 Identities=27% Similarity=0.296 Sum_probs=45.1
Q ss_pred CCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEE
Q 048097 104 PYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFAGF 176 (224)
Q Consensus 104 pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~~~ 176 (224)
++-..++|+|+ .-|+.||++|++++.+. ++ .+.+++||++++|+|.+|.....++++...+.+.
T Consensus 12 ~~~~~~~h~h~-~~~i~~v~~G~~~~~~~------~~--~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~ 75 (136)
T PF02311_consen 12 PNFEFPPHWHD-FYEIIYVLSGEGTLHID------GQ--EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIY 75 (136)
T ss_dssp TT-SEEEETT--SEEEEEEEEE-EEEEET------TE--EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEE
T ss_pred CCCccCCEECC-CEEEEEEeCCEEEEEEC------CE--EEEEECCEEEEecCCccEEEecCCCCCEEEEEEE
Confidence 44456899997 69999999999999764 33 5899999999999999999988877666655443
No 31
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.23 E-value=1.3e-05 Score=65.50 Aligned_cols=71 Identities=25% Similarity=0.334 Sum_probs=50.3
Q ss_pred cCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEEeCCCCc
Q 048097 107 QNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFAGFSSQFPG 182 (224)
Q Consensus 107 ~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~~~~s~~pg 182 (224)
....|.|. ..|+-|+++|++.+.+...+ ++.....+++||++++|+|+.||+.-......+++=.| ...||
T Consensus 84 f~~EH~H~-deEvR~i~~G~g~Fdvr~~~---~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF-~~~~g 154 (157)
T PF03079_consen 84 FFEEHTHE-DEEVRYIVDGSGYFDVRDGD---DVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLF-KDEPG 154 (157)
T ss_dssp HCS-EEES-S-EEEEEEECEEEEEEE-TT---CEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEE-SSCGG
T ss_pred hheeEecC-hheEEEEeCcEEEEEEEcCC---CEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEee-cCCCC
Confidence 34789997 59999999999999998765 56556789999999999999999975444456666445 44454
No 32
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.17 E-value=1.4e-05 Score=68.69 Aligned_cols=69 Identities=22% Similarity=0.087 Sum_probs=49.0
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEE
Q 048097 95 TSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFA 174 (224)
Q Consensus 95 is~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~ 174 (224)
++.....++. + ..+||-+..|+.||++|++++.+. ++ ++.+++||+++||+|..|.+...+ .++++.
T Consensus 157 m~aGf~~~~~-~--sf~wtl~~dEi~YVLEGe~~l~Id------G~--t~~l~pGDvlfIPkGs~~hf~tp~--~aRfly 223 (233)
T PRK15457 157 MAAGFMQWEN-A--FFPWTLNYDEIDMVLEGELHVRHE------GE--TMIAKAGDVMFIPKGSSIEFGTPS--SVRFLY 223 (233)
T ss_pred eeeEEEEEec-C--ccceeccceEEEEEEEeEEEEEEC------CE--EEEeCCCcEEEECCCCeEEecCCC--CeeEEE
Confidence 4444444543 2 344777789999999999999874 33 589999999999999995554443 555554
Q ss_pred EE
Q 048097 175 GF 176 (224)
Q Consensus 175 ~~ 176 (224)
+.
T Consensus 224 V~ 225 (233)
T PRK15457 224 VA 225 (233)
T ss_pred EE
Confidence 44
No 33
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.04 E-value=2.3e-05 Score=69.96 Aligned_cols=59 Identities=20% Similarity=0.163 Sum_probs=48.5
Q ss_pred EEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCC
Q 048097 100 IDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGK 167 (224)
Q Consensus 100 v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~ 167 (224)
..-.|..+.++|||. .-|++|+++|++.+.+. ++ ...+++||+++++.|.+|.....++
T Consensus 31 ~~~~~~~m~~~HwH~-e~Ei~yv~~G~~~~~i~------g~--~~~l~~Gd~ili~s~~~H~~~~~~~ 89 (302)
T PRK10371 31 EFRPPHIMPTSHWHG-QVEVNVPFDGDVEYLIN------NE--KVQINQGHITLFWACTPHQLTDPGN 89 (302)
T ss_pred EeeCCCCCCCCCccc-cEEEEEecCCcEEEEEC------CE--EEEEcCCcEEEEecCCcccccccCC
Confidence 345667789999997 58999999999988753 34 5889999999999999998765444
No 34
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.04 E-value=1.2e-05 Score=72.98 Aligned_cols=76 Identities=20% Similarity=0.224 Sum_probs=63.8
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEE
Q 048097 94 GTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAF 173 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l 173 (224)
.|.+..-.+.||...++|-|. +.-+.+|++|++....++. + +..+++||+|+.|.+..|...|.|+++++.+
T Consensus 80 tl~a~~q~l~pGe~~~~HRht-~sAl~~vveG~G~~t~V~g-----~--~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wl 151 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRHT-QSALRFIVEGKGAFTAVDG-----E--RTTMHPGDFIITPSWTWHDHGNPGDEPMIWL 151 (335)
T ss_pred hHHhhhEEeCCCCCCCccccc-cceEEEEEEcCceEEEECC-----E--EEeeeCCCEEEeCCCeeEecccCCCCcEEEE
Confidence 455666778999999999997 7899999999996556643 3 4899999999999999999999999997776
Q ss_pred EEEe
Q 048097 174 AGFS 177 (224)
Q Consensus 174 ~~~~ 177 (224)
.+++
T Consensus 152 d~lD 155 (335)
T TIGR02272 152 DGLD 155 (335)
T ss_pred ecCC
Confidence 6654
No 35
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.01 E-value=5.9e-05 Score=61.97 Aligned_cols=73 Identities=19% Similarity=0.278 Sum_probs=59.8
Q ss_pred CCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEEeCCCCceeec
Q 048097 109 PPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFAGFSSQFPGVITI 186 (224)
Q Consensus 109 ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~~~~s~~pg~~~~ 186 (224)
.-|.|. ..|+-|++.|.+.+.+...+ ++.+...+.+||.+.+|+|.-||+--..+...+++=.| ...+|.+.+
T Consensus 89 ~EH~H~-d~EvRy~vaG~GiF~v~~~d---~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF-~~~~gWVa~ 161 (181)
T COG1791 89 QEHLHT-DDEVRYFVAGEGIFDVHSPD---GKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLF-TEPEGWVAI 161 (181)
T ss_pred HHhccC-CceEEEEEecceEEEEECCC---CcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEe-eCCCCceee
Confidence 569996 69999999999999999876 78899999999999999999999965545556666545 466777643
No 36
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=97.92 E-value=8.5e-05 Score=64.81 Aligned_cols=52 Identities=25% Similarity=0.360 Sum_probs=43.3
Q ss_pred CCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeC
Q 048097 105 YGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNI 165 (224)
Q Consensus 105 gg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~ 165 (224)
+...++|||. ..|++||++|++++.+. ++ ...+.+||++++|+|..|.....
T Consensus 33 ~~~~~~H~H~-~~ei~~v~~G~~~~~i~------~~--~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 33 ESVSGLHQHD-YYEFTLVLTGRYYQEIN------GK--RVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred hcCCCCcccc-cEEEEEEEeceEEEEEC------CE--EEEECCCcEEEeCCCCccceeee
Confidence 3456899996 78999999999998763 33 47999999999999999976543
No 37
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=97.90 E-value=0.0001 Score=58.38 Aligned_cols=78 Identities=22% Similarity=0.280 Sum_probs=46.9
Q ss_pred EEEEEEEcCCC-cCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCC-CEEEEcCCCeeEEEeCCCCcEEEE
Q 048097 96 SAVRIDYAPYG-QNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKG-DVFVFPIGLIHFQVNIGKTSAVAF 173 (224)
Q Consensus 96 s~~~v~l~pgg-~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~G-Dv~v~P~G~~H~~~N~G~~~a~~l 173 (224)
.+..+.-.|+| ....|.|...+|+++|++|+..+.+.+.. .+ ....|... ..+.+|+|..|.+.|.+.+ ++++
T Consensus 33 rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~---~~-~~~~L~~~~~~L~Ippg~w~~~~~~s~~-svlL 107 (131)
T PF05523_consen 33 RVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGR---EE-EEFILDEPNKGLYIPPGVWHGIKNFSED-SVLL 107 (131)
T ss_dssp EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS----E-EEEEE--TTEEEEE-TT-EEEEE---TT--EEE
T ss_pred EEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCC---Cc-EEEEECCCCeEEEECCchhhHhhccCCC-cEEE
Confidence 33444334445 58999999999999999999999987643 22 45677554 5999999999999999887 6666
Q ss_pred EEEeCC
Q 048097 174 AGFSSQ 179 (224)
Q Consensus 174 ~~~~s~ 179 (224)
++.+.
T Consensus 108 -v~as~ 112 (131)
T PF05523_consen 108 -VLASE 112 (131)
T ss_dssp -EEESS
T ss_pred -EEcCC
Confidence 46554
No 38
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=97.79 E-value=4.7e-05 Score=60.56 Aligned_cols=66 Identities=23% Similarity=0.320 Sum_probs=51.2
Q ss_pred CCcC-CCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEE
Q 048097 105 YGQN-PPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFAGF 176 (224)
Q Consensus 105 gg~~-ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~~~ 176 (224)
|++. --|||..+.|++.|++|+..+.+...+ +. ...+++||++++|+|.-|.-. ...-+..++.++
T Consensus 52 g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~---G~--el~v~~GDvlliPAGvGH~rl-~sS~DF~VvGaY 118 (163)
T COG4297 52 GGVFNYHHYHSGAHEVLGVLRGQAGLQIGGAD---GQ--ELEVGEGDVLLIPAGVGHCRL-HSSADFQVVGAY 118 (163)
T ss_pred ccccccccccCCcceEEEEecceeEEEecCCC---Cc--eeeecCCCEEEEecCcccccc-cCCCCeEEEccc
Confidence 4543 457999999999999999999988776 44 478999999999999999763 344445555444
No 39
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.79 E-value=4e-05 Score=68.19 Aligned_cols=92 Identities=22% Similarity=0.220 Sum_probs=76.8
Q ss_pred EEEccccccCcccccc-----eEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEE
Q 048097 79 VTNANVEQIPGLNTLG-----TSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFV 153 (224)
Q Consensus 79 v~~~~~~~~p~L~~lg-----is~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v 153 (224)
++.+-.-+.|+|++.. +-+..--+.||.+.|.|.|. .+-+-||++|++-.+.++. .| ..+++||.++
T Consensus 71 ~RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHs-qsAlRFvveG~Ga~T~VdG----er---~~M~~GDfil 142 (351)
T COG3435 71 VRRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHN-QSALRFVVEGKGAYTVVDG----ER---TPMEAGDFIL 142 (351)
T ss_pred eeEEEEecCCCCCCcccccHHHHhhhheecCcccCCccccc-ccceEEEEeccceeEeecC----ce---eeccCCCEEE
Confidence 6777777889888773 22334467899999999996 6899999999998888864 33 7899999999
Q ss_pred EcCCCeeEEEeCCCCcEEEEEEEeC
Q 048097 154 FPIGLIHFQVNIGKTSAVAFAGFSS 178 (224)
Q Consensus 154 ~P~G~~H~~~N~G~~~a~~l~~~~s 178 (224)
-|++..|..-|.|.+|.+.+-.++.
T Consensus 143 TP~w~wHdHgn~g~eP~iWlDgLDi 167 (351)
T COG3435 143 TPAWTWHDHGNEGTEPCIWLDGLDI 167 (351)
T ss_pred ccCceeccCCCCCCCceEEEcccch
Confidence 9999999999999999999887753
No 40
>PRK13500 transcriptional activator RhaR; Provisional
Probab=97.79 E-value=9.3e-05 Score=66.18 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=45.4
Q ss_pred CCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCC
Q 048097 104 PYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGK 167 (224)
Q Consensus 104 pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~ 167 (224)
|....++|||+ .-|++||++|++...+.+ + ...+++||++++|+|..|......+
T Consensus 57 ~~~~~~~H~H~-~~el~~v~~G~g~~~v~~------~--~~~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 57 PQDVFAEHTHD-FCELVIVWRGNGLHVLND------R--PYRITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred CCCCCCccccc-eEEEEEEEcCeEEEEECC------E--EEeecCCeEEEECCCCeecccccCC
Confidence 33457899997 789999999999987642 3 4899999999999999999876444
No 41
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=97.78 E-value=6.2e-05 Score=65.74 Aligned_cols=57 Identities=18% Similarity=0.108 Sum_probs=46.3
Q ss_pred CCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCc
Q 048097 105 YGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTS 169 (224)
Q Consensus 105 gg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~ 169 (224)
+...++|||.+.-|++|+++|++++.+. ++ ...+++||++++|+|..|.....++..
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~~------~~--~~~l~~g~~~ii~~~~~H~~~~~~~~~ 89 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIALQLD------EH--EYSEYAPCFFLTPPSVPHGFVTDLDAD 89 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEEEEC------CE--EEEecCCeEEEeCCCCccccccCCCcc
Confidence 3468999997568999999999988763 33 478999999999999999987654433
No 42
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.76 E-value=7.4e-05 Score=53.33 Aligned_cols=58 Identities=24% Similarity=0.251 Sum_probs=42.7
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEE
Q 048097 95 TSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQ 162 (224)
Q Consensus 95 is~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~ 162 (224)
++....+..||. ...++. ..|++|||+|++++... + ++ +.++++||++++|+|..-.+
T Consensus 7 ~~~g~w~~~pg~-~~~~~~--~~E~~~vleG~v~it~~--~---G~--~~~~~aGD~~~~p~G~~~~w 64 (74)
T PF05899_consen 7 FSAGVWECTPGK-FPWPYP--EDEFFYVLEGEVTITDE--D---GE--TVTFKAGDAFFLPKGWTGTW 64 (74)
T ss_dssp EEEEEEEEECEE-EEEEES--SEEEEEEEEEEEEEEET--T---TE--EEEEETTEEEEE-TTEEEEE
T ss_pred EEEEEEEECCce-eEeeCC--CCEEEEEEEeEEEEEEC--C---CC--EEEEcCCcEEEECCCCEEEE
Confidence 466667778865 334444 48999999999999753 2 33 48999999999999986554
No 43
>PRK13501 transcriptional activator RhaR; Provisional
Probab=97.75 E-value=9.4e-05 Score=65.09 Aligned_cols=62 Identities=21% Similarity=0.193 Sum_probs=48.3
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCC
Q 048097 94 GTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIG 166 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G 166 (224)
.+.+.+ ..+....++|||. ..|++||++|++++.+. ++ ...+++||++++|+|.+|.+...+
T Consensus 19 ~~~~~~--~~~~~~~~~H~H~-~~ei~~i~~G~~~~~i~------~~--~~~l~~g~~~~I~p~~~H~~~~~~ 80 (290)
T PRK13501 19 PVAVTN--RYPQETFVEHTHQ-FCEIVIVWRGNGLHVLN------DH--PYRITCGDVFYIQAADHHSYESVH 80 (290)
T ss_pred ceEEec--CCCCCCCcccccc-ceeEEEEecCceEEEEC------Ce--eeeecCCeEEEEcCCCcccccccC
Confidence 345444 2334457799996 69999999999999864 33 489999999999999999987543
No 44
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=97.75 E-value=4.9e-05 Score=66.50 Aligned_cols=73 Identities=27% Similarity=0.360 Sum_probs=47.0
Q ss_pred cceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEE
Q 048097 93 LGTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVA 172 (224)
Q Consensus 93 lgis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~ 172 (224)
.|-+..|+.+.+|-..|||+|. +++-.|||+|.+..+ + .+...+-|.+|..+..|+|..|+....+.+.+.+
T Consensus 34 ~g~~~~~vkf~~g~~~pph~H~-~~~~~~Vi~G~~~~~--~-----~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~ 105 (251)
T PF14499_consen 34 DGPSGMRVKFPAGFSSPPHIHN-ADYRGTVISGELHNG--D-----PKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLF 105 (251)
T ss_dssp TS-EEEEEEE-TT-EE--BEES-S-EEEEEEESEEEET--T-----EE-----E-TTEEEEE-TT-EEEETTS-EE-EEE
T ss_pred CCcceEEEEcCCCccCCCccee-eeEEEEEEEeEEEcC--C-----CcccceecCCCceEeccCCCceeeeccCccEEEE
Confidence 3778999999999999999997 799999999987663 1 2333467999999999999999987766655544
Q ss_pred E
Q 048097 173 F 173 (224)
Q Consensus 173 l 173 (224)
+
T Consensus 106 ~ 106 (251)
T PF14499_consen 106 I 106 (251)
T ss_dssp E
T ss_pred E
Confidence 4
No 45
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.70 E-value=7.4e-05 Score=61.05 Aligned_cols=57 Identities=30% Similarity=0.431 Sum_probs=48.9
Q ss_pred cCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCC
Q 048097 107 QNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGK 167 (224)
Q Consensus 107 ~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~ 167 (224)
..+.|.|+ .+|+-||++|++++-+-+.+ ++-+..-+++||.+++|+|+-|.+.-+.+
T Consensus 85 FfEEhlh~-deeiR~il~GtgYfDVrd~d---d~WIRi~vekGDlivlPaGiyHRFTtt~~ 141 (179)
T KOG2107|consen 85 FFEEHLHE-DEEIRYILEGTGYFDVRDKD---DQWIRIFVEKGDLIVLPAGIYHRFTTTPS 141 (179)
T ss_pred HHHHhcCc-hhheEEEeecceEEeeccCC---CCEEEEEEecCCEEEecCcceeeeecCch
Confidence 34899998 49999999999999988776 67777889999999999999999864433
No 46
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.65 E-value=0.00016 Score=62.79 Aligned_cols=53 Identities=26% Similarity=0.244 Sum_probs=44.5
Q ss_pred CCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeC
Q 048097 104 PYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNI 165 (224)
Q Consensus 104 pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~ 165 (224)
+....++|||. .-|++||++|++++.+.+. ...+++||++++|+|..|.....
T Consensus 24 ~~~~~~~H~H~-~~ei~~v~~G~~~~~i~~~--------~~~l~~g~~~~i~~~~~h~~~~~ 76 (278)
T PRK13503 24 PQAAFPEHHHD-FHEIVIVEHGTGIHVFNGQ--------PYTLSGGTVCFVRDHDRHLYEHT 76 (278)
T ss_pred ccccccccccC-ceeEEEEecCceeeEecCC--------cccccCCcEEEECCCccchhhhc
Confidence 44567899996 7999999999999987532 37899999999999999987654
No 47
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=97.62 E-value=0.00084 Score=52.65 Aligned_cols=82 Identities=15% Similarity=0.133 Sum_probs=70.1
Q ss_pred ccceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEE
Q 048097 92 TLGTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAV 171 (224)
Q Consensus 92 ~lgis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~ 171 (224)
+.|+|+-...+.+|.....||-. .-|-.||++|++++.-... ++ .+.+++|.++...+-..|+.... ++++
T Consensus 32 gmGFS~h~T~i~aGtet~~~Ykn-HlEAvyci~G~Gev~~~~~----G~--~~~i~pGt~YaLd~hD~H~lra~--~dm~ 102 (126)
T PF06339_consen 32 GMGFSFHETTIYAGTETHIHYKN-HLEAVYCIEGEGEVEDLDT----GE--VHPIKPGTMYALDKHDRHYLRAK--TDMR 102 (126)
T ss_pred CCCEEEEEEEEeCCCeeEEEecC-ceEEEEEEeceEEEEEccC----Cc--EEEcCCCeEEecCCCccEEEEec--CCEE
Confidence 45899999999999999999874 6899999999999987654 34 58999999999999999999754 4899
Q ss_pred EEEEEeCCCCc
Q 048097 172 AFAGFSSQFPG 182 (224)
Q Consensus 172 ~l~~~~s~~pg 182 (224)
++++||.+--|
T Consensus 103 ~vCVFnPpltG 113 (126)
T PF06339_consen 103 LVCVFNPPLTG 113 (126)
T ss_pred EEEEcCCCCcC
Confidence 99999866444
No 48
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=97.55 E-value=0.00072 Score=57.83 Aligned_cols=74 Identities=19% Similarity=0.163 Sum_probs=63.7
Q ss_pred eEEEEEEEcCCC-cCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEE
Q 048097 95 TSAVRIDYAPYG-QNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAF 173 (224)
Q Consensus 95 is~~~v~l~pgg-~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l 173 (224)
++-+.+++.|+| .-.|-.-++++-++||++|++++.+. ++ ++.|++|+..++|+|..|...|...+++.+.
T Consensus 61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~------G~--th~l~eggyaylPpgs~~~~~N~~~~~~rfh 132 (264)
T COG3257 61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAE------GK--THALREGGYAYLPPGSGWTLRNAQKEDSRFH 132 (264)
T ss_pred hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEc------Ce--EEEeccCCeEEeCCCCcceEeeccCCceEEE
Confidence 456778998876 67788788899999999999999875 34 5899999999999999999999999999887
Q ss_pred EEE
Q 048097 174 AGF 176 (224)
Q Consensus 174 ~~~ 176 (224)
..-
T Consensus 133 w~r 135 (264)
T COG3257 133 WIR 135 (264)
T ss_pred EEe
Confidence 654
No 49
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.50 E-value=0.0004 Score=60.58 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=45.4
Q ss_pred cCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCC
Q 048097 103 APYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGK 167 (224)
Q Consensus 103 ~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~ 167 (224)
.|.-..++|||. .-|++||.+|++++.+. ++ ...+++||++++|+|.+|.....++
T Consensus 26 ~~~~~~~~H~h~-~~~l~~v~~G~~~~~i~------~~--~~~l~~g~l~li~~~~~H~~~~~~~ 81 (282)
T PRK13502 26 YPQDVFAEHTHE-FCELVMVWRGNGLHVLN------ER--PYRITRGDLFYIRAEDKHSYTSVND 81 (282)
T ss_pred CCCCCCCccccc-eEEEEEEecCcEEEEEC------CE--EEeecCCcEEEECCCCcccccccCC
Confidence 344447899996 78999999999998763 33 4899999999999999999865443
No 50
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.46 E-value=0.0004 Score=63.25 Aligned_cols=86 Identities=19% Similarity=0.109 Sum_probs=64.1
Q ss_pred CeeEEEccccccCc-ccccceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEE
Q 048097 76 GFNVTNANVEQIPG-LNTLGTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 154 (224)
Q Consensus 76 g~~v~~~~~~~~p~-L~~lgis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~ 154 (224)
|..+..++..+=+. ..+++..+ ..+.+|....+|-|. ++.+++|++|++++.+. ++ +...++||+|++
T Consensus 232 g~~l~y~NP~TG~~~~pti~~~~--q~L~~G~~t~~~r~T-~s~Vf~VieG~G~s~ig------~~--~~~W~~gD~f~v 300 (335)
T TIGR02272 232 GLKLRYVNPATGGYPMPTIGAFI--QLLPKGFRTATYRST-DATVFCVVEGRGQVRIG------DA--VFRFSPKDVFVV 300 (335)
T ss_pred eEEEEEeCCCCCCCcchhHHHHH--hccCCCCCCCCcccc-ccEEEEEEeCeEEEEEC------CE--EEEecCCCEEEE
Confidence 45567777655553 44445443 557888899999996 68999999999999874 33 478999999999
Q ss_pred cCCCeeEEEeCCCCcEEEEE
Q 048097 155 PIGLIHFQVNIGKTSAVAFA 174 (224)
Q Consensus 155 P~G~~H~~~N~G~~~a~~l~ 174 (224)
|....|...|. ++++++.
T Consensus 301 PsW~~~~h~a~--~da~Lf~ 318 (335)
T TIGR02272 301 PSWHPVRFEAS--DDAVLFS 318 (335)
T ss_pred CCCCcEecccC--CCeEEEE
Confidence 99988877663 4566553
No 51
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.39 E-value=0.0022 Score=51.80 Aligned_cols=79 Identities=15% Similarity=0.253 Sum_probs=49.3
Q ss_pred EEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEEe
Q 048097 98 VRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFAGFS 177 (224)
Q Consensus 98 ~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~~~~ 177 (224)
..+.=.|+...--|+.+ +.|++|-++|...+.+++. ++.....+++||+|+.|++.+|.-+-.. ..+.+++-.
T Consensus 36 VmvVGGPN~R~DyHine-~eE~FyQ~kG~m~Lkv~e~----g~~kdi~I~EGe~fLLP~~vpHsP~R~~--~tiGLViEr 108 (151)
T PF06052_consen 36 VMVVGGPNQRTDYHINE-TEEFFYQLKGDMCLKVVED----GKFKDIPIREGEMFLLPANVPHSPQRPA--DTIGLVIER 108 (151)
T ss_dssp EEEEESSB--SSEEE-S-S-EEEEEEES-EEEEEEET----TEEEEEEE-TTEEEEE-TT--EEEEE-T--T-EEEEEEE
T ss_pred EEEEcCCCCCCccccCC-cceEEEEEeCcEEEEEEeC----CceEEEEeCCCcEEecCCCCCCCCcCCC--CcEEEEEEe
Confidence 34455677777889997 7999999999999998875 4666789999999999999999986543 345554444
Q ss_pred CCCCce
Q 048097 178 SQFPGV 183 (224)
Q Consensus 178 s~~pg~ 183 (224)
...+|.
T Consensus 109 ~R~~~~ 114 (151)
T PF06052_consen 109 KRPEGE 114 (151)
T ss_dssp ---TTS
T ss_pred ccCCCC
Confidence 344443
No 52
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.00 E-value=0.0077 Score=50.00 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=55.9
Q ss_pred CCCcCCCccCCCC-cEEEEEEecEEEEEEEeCCCCC---CeeEEEEecCC--CEEEEcCCCeeEEEeCCCCcEEEEE
Q 048097 104 PYGQNPPHTHPRA-TEILVVLEGTLYVGFVTSNQLN---NTLIAKVLNKG--DVFVFPIGLIHFQVNIGKTSAVAFA 174 (224)
Q Consensus 104 pgg~~ppH~Hp~a-~Ei~~Vl~G~~~v~~v~~~~~~---~k~~~~~l~~G--Dv~v~P~G~~H~~~N~G~~~a~~l~ 174 (224)
+|-++..|+|.+- .+++.|++|++..-.++-..++ ++....++.+- ..+.+|+|..|.++|.+++..+.+.
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~ 130 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYK 130 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEE
Confidence 8889999999988 8999999999999888743210 13445566654 8999999999999999998744443
No 53
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=96.98 E-value=0.0021 Score=52.20 Aligned_cols=58 Identities=26% Similarity=0.177 Sum_probs=39.4
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEE
Q 048097 95 TSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQV 163 (224)
Q Consensus 95 is~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~ 163 (224)
+++...+++.. +.-|.-.-.|+.||++|++.+... ++ +...++||+++||+|.-=.+.
T Consensus 77 l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~~------G~--~~~A~~GDvi~iPkGs~I~fs 134 (152)
T PF06249_consen 77 LSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISID------GQ--TVTAKPGDVIFIPKGSTITFS 134 (152)
T ss_dssp SEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEET------TE--EEEEETT-EEEE-TT-EEEEE
T ss_pred eeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEEC------CE--EEEEcCCcEEEECCCCEEEEe
Confidence 44444555553 456777789999999999988732 34 478899999999999765553
No 54
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=96.65 E-value=0.044 Score=45.34 Aligned_cols=86 Identities=21% Similarity=0.193 Sum_probs=57.8
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCC-CCee----EEEEecCCCEEEEcCCCeeEEEeCC-C
Q 048097 94 GTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQL-NNTL----IAKVLNKGDVFVFPIGLIHFQVNIG-K 167 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~-~~k~----~~~~l~~GDv~v~P~G~~H~~~N~G-~ 167 (224)
.+++..+.-.||...+.|=|..+.=++.|++|+++-........ +.+. ....+..|.+.+++.+.+|.+.|.+ +
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~ 153 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD 153 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence 46778889999999999999877778889999988776543310 0111 2345688888899999999999887 8
Q ss_pred CcEEEEEEEeCC
Q 048097 168 TSAVAFAGFSSQ 179 (224)
Q Consensus 168 ~~a~~l~~~~s~ 179 (224)
++++-+=+++.+
T Consensus 154 ~~avSLHvYspP 165 (175)
T PF05995_consen 154 EPAVSLHVYSPP 165 (175)
T ss_dssp S-EEEEEEEES-
T ss_pred CCEEEEEEcCCC
Confidence 888888777644
No 55
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=96.61 E-value=0.02 Score=46.56 Aligned_cols=68 Identities=25% Similarity=0.170 Sum_probs=47.1
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEE
Q 048097 95 TSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFA 174 (224)
Q Consensus 95 is~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~ 174 (224)
+++...++++ ..+|.-. +-+|+-|||||++.+...+ + +..-++||++++|+|.---+--.|. +.++-
T Consensus 100 l~aG~m~~~~-~tf~wtl--~yDe~d~VlEGrL~V~~~g------~--tv~a~aGDvifiPKgssIefst~ge--a~fly 166 (176)
T COG4766 100 LGAGLMEMKN-TTFPWTL--NYDEIDYVLEGRLHVRIDG------R--TVIAGAGDVIFIPKGSSIEFSTTGE--AKFLY 166 (176)
T ss_pred cccceeeecc-ccCccee--cccceeEEEeeeEEEEEcC------C--eEecCCCcEEEecCCCeEEEeccce--EEEEE
Confidence 4455555666 4444443 4689999999999998653 2 3677999999999998766654444 55554
Q ss_pred E
Q 048097 175 G 175 (224)
Q Consensus 175 ~ 175 (224)
+
T Consensus 167 v 167 (176)
T COG4766 167 V 167 (176)
T ss_pred E
Confidence 3
No 56
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=96.52 E-value=0.0052 Score=47.80 Aligned_cols=60 Identities=22% Similarity=0.192 Sum_probs=44.1
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEe
Q 048097 95 TSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVN 164 (224)
Q Consensus 95 is~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N 164 (224)
+.....+-.||. .|++-...|+.++|+|++++.-. + ++ ...+++||+++||+|..=-++-
T Consensus 45 ~~~GiWe~TpG~---~r~~y~~~E~chil~G~v~~T~d--~---Ge--~v~~~aGD~~~~~~G~~g~W~V 104 (116)
T COG3450 45 VETGIWECTPGK---FRVTYDEDEFCHILEGRVEVTPD--G---GE--PVEVRAGDSFVFPAGFKGTWEV 104 (116)
T ss_pred eeEeEEEecCcc---ceEEcccceEEEEEeeEEEEECC--C---Ce--EEEEcCCCEEEECCCCeEEEEE
Confidence 455556666665 34555568999999999988632 2 34 4799999999999998766543
No 57
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=96.45 E-value=0.02 Score=47.58 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=53.0
Q ss_pred cCCCcCCCccCCCC---cEEEEEEecEEEEEEEeCCCC---CCeeEEEEecCCC--EEEEcCCCeeEEEeCCCCcEEEE
Q 048097 103 APYGQNPPHTHPRA---TEILVVLEGTLYVGFVTSNQL---NNTLIAKVLNKGD--VFVFPIGLIHFQVNIGKTSAVAF 173 (224)
Q Consensus 103 ~pgg~~ppH~Hp~a---~Ei~~Vl~G~~~v~~v~~~~~---~~k~~~~~l~~GD--v~v~P~G~~H~~~N~G~~~a~~l 173 (224)
.+|-++.+|+|..- ..++.|++|++..-++|-..+ =++.....|.+++ .++||+|..|.....+++..+.+
T Consensus 51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y 129 (176)
T PF00908_consen 51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLY 129 (176)
T ss_dssp ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEE
Confidence 34778999999764 689999999999988873311 1456678887776 79999999999999977744444
No 58
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=96.36 E-value=0.068 Score=44.45 Aligned_cols=71 Identities=14% Similarity=0.127 Sum_probs=54.5
Q ss_pred cCCCcCCCccC--CCCcEEEEEEecEEEEEEEeCCCC---CCeeEEEEecC--CCEEEEcCCCeeEEEeCCCCcEEEE
Q 048097 103 APYGQNPPHTH--PRATEILVVLEGTLYVGFVTSNQL---NNTLIAKVLNK--GDVFVFPIGLIHFQVNIGKTSAVAF 173 (224)
Q Consensus 103 ~pgg~~ppH~H--p~a~Ei~~Vl~G~~~v~~v~~~~~---~~k~~~~~l~~--GDv~v~P~G~~H~~~N~G~~~a~~l 173 (224)
.+|-++.+|.| +....+++|++|++..-++|-..+ -++.....|.+ +..++||+|..|.....+++..+.+
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v~Y 129 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEFLY 129 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCCeEEEE
Confidence 56778999998 336899999999999988875421 13455677776 6699999999999999886633333
No 59
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.24 E-value=0.024 Score=47.86 Aligned_cols=72 Identities=22% Similarity=0.335 Sum_probs=49.6
Q ss_pred EEEEEEcCCC-cCCCccCCCCcEEEEEEecEEEEEEEeCCCC--------------------------------CCeeEE
Q 048097 97 AVRIDYAPYG-QNPPHTHPRATEILVVLEGTLYVGFVTSNQL--------------------------------NNTLIA 143 (224)
Q Consensus 97 ~~~v~l~pgg-~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~--------------------------------~~k~~~ 143 (224)
...+-+.++| ..+.|+.+ ..-++.+++|+=++.+..+... ..+.+.
T Consensus 132 ~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~ 210 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE 210 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred ccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence 4456666644 78999987 6789999999999988765410 113567
Q ss_pred EEecCCCEEEEcCCCeeEEEeCCCCc
Q 048097 144 KVLNKGDVFVFPIGLIHFQVNIGKTS 169 (224)
Q Consensus 144 ~~l~~GDv~v~P~G~~H~~~N~G~~~ 169 (224)
.+|++||+++||+|..|+.+|...++
T Consensus 211 ~~l~pGD~LfiP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 211 VVLEPGDVLFIPPGWWHQVENLSDDD 236 (251)
T ss_dssp EEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred EEECCCeEEEECCCCeEEEEEcCCCC
Confidence 89999999999999999999984333
No 60
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.90 E-value=0.029 Score=50.30 Aligned_cols=89 Identities=26% Similarity=0.240 Sum_probs=63.2
Q ss_pred CCCeeEEEccccccC-cccccceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEE
Q 048097 74 RLGFNVTNANVEQIP-GLNTLGTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF 152 (224)
Q Consensus 74 ~~g~~v~~~~~~~~p-~L~~lgis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~ 152 (224)
-.|..+..++..+=- ...+ |....--|.||-.-.+|-|- .+-+..|.+|++++.+. ++ ++...+||+|
T Consensus 241 ~dG~~~ryvNP~TGg~~mpt--I~a~mqlL~~Gf~~~~~r~t-~s~iy~V~eGsg~~~Ig------~~--rf~~~~~D~f 309 (351)
T COG3435 241 FDGYKMRYVNPVTGGYAMPT--IGAFMQLLPPGFHGKAHRHT-DSTIYHVVEGSGYTIIG------GE--RFDWSAGDIF 309 (351)
T ss_pred CCcceEEEecCCCCCCcCch--HHHHHHhcCCcccCCceecc-CCEEEEEEecceeEEEC------CE--EeeccCCCEE
Confidence 346666666653311 1111 22223346788788999886 47888899999999764 33 4889999999
Q ss_pred EEcCCCeeEEEeCCCCcEEEEE
Q 048097 153 VFPIGLIHFQVNIGKTSAVAFA 174 (224)
Q Consensus 153 v~P~G~~H~~~N~G~~~a~~l~ 174 (224)
++|.-..|...|. .+.+++++
T Consensus 310 vVPsW~~~~~~~g-s~da~LFs 330 (351)
T COG3435 310 VVPSWAWHEHVNG-SEDAVLFS 330 (351)
T ss_pred EccCcceeecccC-CcceEEEe
Confidence 9999999999875 77787774
No 61
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.65 E-value=0.13 Score=46.36 Aligned_cols=70 Identities=23% Similarity=0.270 Sum_probs=45.4
Q ss_pred EEEEEEEcCCC--cCCCccCCCCcEEEEEEecEEEEEEEeCCC------C---------CCeeEEEEecCCCEEEEcCCC
Q 048097 96 SAVRIDYAPYG--QNPPHTHPRATEILVVLEGTLYVGFVTSNQ------L---------NNTLIAKVLNKGDVFVFPIGL 158 (224)
Q Consensus 96 s~~~v~l~pgg--~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~------~---------~~k~~~~~l~~GDv~v~P~G~ 158 (224)
..+-+.+.|+| -+.|||=. ..-+++=++|+=+..+..... . .......+|++||++++|+|.
T Consensus 114 ~~~n~Y~tp~g~~g~~~H~D~-~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~ 192 (319)
T PF08007_consen 114 VGANAYLTPPGSQGFGPHYDD-HDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGW 192 (319)
T ss_dssp EEEEEEEETSSBEESECEE-S-SEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-
T ss_pred cceEEEecCCCCCCccCEECC-cccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCc
Confidence 34456678888 78999876 567777788876666654210 0 122456899999999999999
Q ss_pred eeEEEeCC
Q 048097 159 IHFQVNIG 166 (224)
Q Consensus 159 ~H~~~N~G 166 (224)
+|.....+
T Consensus 193 ~H~~~~~~ 200 (319)
T PF08007_consen 193 WHQAVTTD 200 (319)
T ss_dssp EEEEEESS
T ss_pred cCCCCCCC
Confidence 99999888
No 62
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=95.46 E-value=0.12 Score=48.62 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=37.9
Q ss_pred CCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEE
Q 048097 109 PPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFA 174 (224)
Q Consensus 109 ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~ 174 (224)
..-.+-+++|++++-+|++++.- +- ++ ..+++||+++||+|+.+.+.-. +++..+.
T Consensus 139 ~~f~NaDGD~Li~~q~G~l~l~T--e~---G~---L~v~pGd~~VIPRG~~~rv~l~--~p~rgyi 194 (424)
T PF04209_consen 139 RAFRNADGDELIFPQQGSLRLET--EF---GR---LDVRPGDYVVIPRGTRFRVELP--GPARGYI 194 (424)
T ss_dssp EEEEESSEEEEEEEEES-EEEEE--TT---EE---EEE-TTEEEEE-TT--EEEE-S--SSEEEEE
T ss_pred cceEcCCCCEEEEEEECCEEEEe--cC---ee---EEEcCCeEEEECCeeEEEEEeC--CCceEEE
Confidence 34457789999999999998863 32 33 6799999999999999998765 5555543
No 63
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=95.38 E-value=0.055 Score=40.35 Aligned_cols=74 Identities=26% Similarity=0.317 Sum_probs=33.8
Q ss_pred EEEcCCCcCCCccCCCCc--EEEEEE--ecEEEEEEEeCCCC---------------CCeeEEEEecCCCEEEEcCCCee
Q 048097 100 IDYAPYGQNPPHTHPRAT--EILVVL--EGTLYVGFVTSNQL---------------NNTLIAKVLNKGDVFVFPIGLIH 160 (224)
Q Consensus 100 v~l~pgg~~ppH~Hp~a~--Ei~~Vl--~G~~~v~~v~~~~~---------------~~k~~~~~l~~GDv~v~P~G~~H 160 (224)
....+|+..++|.|+.+. =++||- ++...+.|.++... ....+....++||+++||.-+.|
T Consensus 5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H 84 (101)
T PF13759_consen 5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWH 84 (101)
T ss_dssp EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEE
T ss_pred EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEE
Confidence 456789999999999752 222221 22222333333210 01234567899999999999999
Q ss_pred EEE-eCCCCcEEEE
Q 048097 161 FQV-NIGKTSAVAF 173 (224)
Q Consensus 161 ~~~-N~G~~~a~~l 173 (224)
... |.++++-+-+
T Consensus 85 ~v~p~~~~~~Risi 98 (101)
T PF13759_consen 85 GVPPNNSDEERISI 98 (101)
T ss_dssp EE----SSS-EEEE
T ss_pred eccCcCCCCCEEEE
Confidence 985 5555444443
No 64
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=95.16 E-value=0.07 Score=40.85 Aligned_cols=62 Identities=29% Similarity=0.305 Sum_probs=46.4
Q ss_pred CCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcC--CCeeEEEeCCC-CcEEEE
Q 048097 105 YGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPI--GLIHFQVNIGK-TSAVAF 173 (224)
Q Consensus 105 gg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~--G~~H~~~N~G~-~~a~~l 173 (224)
+.-.++|-|.+-+-+.||++|+++-. |+.+ ++ .+|++||+-+.-+ |+.|...|.++ +++..+
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~G--~~---~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~l 103 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSLG--NR---GVLRAGDVQWMTAGSGIVHSERNASDGGPLHGL 103 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE--ETTS--EE---EEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE--CCCC--Ce---eEeCCCeEEEEeCCCCceEEEecCCCCCeEEEE
Confidence 55669999987777889999998664 4442 44 7899999998876 68999999887 666665
No 65
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=95.12 E-value=0.19 Score=47.33 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=44.5
Q ss_pred CCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEE
Q 048097 108 NPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFAG 175 (224)
Q Consensus 108 ~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~~ 175 (224)
...-.+.+++|++++-+|++.+.-.- ++ ..+++||+++||+|+.+.+. ..+++++.+..
T Consensus 146 ~~~f~NaDGD~Livpq~G~l~i~TEf-----G~---L~v~pgei~VIPRG~~frv~-l~~gp~rgyi~ 204 (438)
T PRK05341 146 DRYFYNADGELLIVPQQGRLRLATEL-----GV---LDVEPGEIAVIPRGVKFRVE-LPDGPARGYVC 204 (438)
T ss_pred cceeecCCCCEEEEEEeCCEEEEEec-----cc---eEecCCCEEEEcCccEEEEe-cCCCCeeEEEE
Confidence 44456778999999999999886432 33 68999999999999998885 33456555433
No 66
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=94.80 E-value=0.21 Score=42.96 Aligned_cols=78 Identities=21% Similarity=0.241 Sum_probs=46.3
Q ss_pred EEEcCCCcCCCccCCCCcEEEEEEe-cEEEEEEEeCCC--C-----------CCeeE------EEEecCCCEEEEcCCCe
Q 048097 100 IDYAPYGQNPPHTHPRATEILVVLE-GTLYVGFVTSNQ--L-----------NNTLI------AKVLNKGDVFVFPIGLI 159 (224)
Q Consensus 100 v~l~pgg~~ppH~Hp~a~Ei~~Vl~-G~~~v~~v~~~~--~-----------~~k~~------~~~l~~GDv~v~P~G~~ 159 (224)
+-+.+|...|.|.|..-.|=++.-- |.+.+.+...++ + .++.+ ...|+||+.+-+++|+.
T Consensus 92 m~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~y 171 (225)
T PF07385_consen 92 MIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPGIY 171 (225)
T ss_dssp EEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTEE
T ss_pred eeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCCCe
Confidence 5668899999999998888777665 577777654331 0 11111 25799999999999999
Q ss_pred eEEEeCCCCcEEEEEEEeCC
Q 048097 160 HFQVNIGKTSAVAFAGFSSQ 179 (224)
Q Consensus 160 H~~~N~G~~~a~~l~~~~s~ 179 (224)
|++.-.+.. +++.-+++-
T Consensus 172 H~Fw~e~g~--vLigEVStv 189 (225)
T PF07385_consen 172 HWFWGEGGD--VLIGEVSTV 189 (225)
T ss_dssp EEEEE-TTS--EEEEEEEE-
T ss_pred eeEEecCCC--EEEEeeecc
Confidence 999875544 555555543
No 67
>PLN02658 homogentisate 1,2-dioxygenase
Probab=94.76 E-value=0.29 Score=46.06 Aligned_cols=57 Identities=12% Similarity=0.197 Sum_probs=43.1
Q ss_pred CCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEE
Q 048097 109 PPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFA 174 (224)
Q Consensus 109 ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~ 174 (224)
..-.+.+++|++++-+|++.+.-.- ++ ..+++||+++||+|+.+.+.= .+++++.+.
T Consensus 140 ~~f~NaDGD~Livpq~G~l~i~TEf-----G~---L~v~pgei~VIPRG~~frv~l-~~gp~rgyv 196 (435)
T PLN02658 140 CAFCNADGDFLIVPQQGRLWIKTEL-----GK---LQVSPGEIVVIPRGFRFAVDL-PDGPSRGYV 196 (435)
T ss_pred ceeecCCCCEEEEEEeCCEEEEEec-----cc---eEecCCCEEEecCccEEEEec-CCCCeeEEE
Confidence 3356778999999999999886432 33 688999999999999988853 234555543
No 68
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=94.68 E-value=0.16 Score=43.13 Aligned_cols=76 Identities=24% Similarity=0.287 Sum_probs=45.6
Q ss_pred EEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEE---------EeCCCC---------------CCeeEEEEecCCCE
Q 048097 96 SAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGF---------VTSNQL---------------NNTLIAKVLNKGDV 151 (224)
Q Consensus 96 s~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~---------v~~~~~---------------~~k~~~~~l~~GDv 151 (224)
.+-.+.+.+||....|.||.+ +++|..++.+ .++... ........-++||+
T Consensus 97 ~~W~ni~~~Gg~h~~H~Hp~~-----~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~l 171 (201)
T TIGR02466 97 KAWVNILPQGGTHSPHLHPGS-----VISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRV 171 (201)
T ss_pred eEeEEEcCCCCccCceECCCc-----eEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeE
Confidence 344456789999999999975 3444444433 221100 00011123489999
Q ss_pred EEEcCCCeeEEE-eCCCCcEEEEEEEe
Q 048097 152 FVFPIGLIHFQV-NIGKTSAVAFAGFS 177 (224)
Q Consensus 152 ~v~P~G~~H~~~-N~G~~~a~~l~~~~ 177 (224)
++||.-+.|... |.++++-+- .+||
T Consensus 172 vlFPS~L~H~v~p~~~~~~RIS-iSFN 197 (201)
T TIGR02466 172 LLFESWLRHEVPPNESEEERIS-VSFN 197 (201)
T ss_pred EEECCCCceecCCCCCCCCEEE-EEEe
Confidence 999999999975 555554333 3554
No 69
>COG1741 Pirin-related protein [General function prediction only]
Probab=94.67 E-value=0.12 Score=45.96 Aligned_cols=68 Identities=26% Similarity=0.336 Sum_probs=52.7
Q ss_pred EEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcC--CCeeEEEeC-C-CCcEEEE
Q 048097 99 RIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPI--GLIHFQVNI-G-KTSAVAF 173 (224)
Q Consensus 99 ~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~--G~~H~~~N~-G-~~~a~~l 173 (224)
..++.||.-++||-|.+-+=+.||++|+++-. |+.+ |+ ..+++||+-+.-+ |+.|.-.|. . .+++..+
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~G--n~---~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~ 119 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSLG--NK---GVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGL 119 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecCC--ce---eeecccceeEEcCCCceeecccCCccCCCcccee
Confidence 45688999999999988777889999998775 3332 55 7899999999986 689999987 3 3355444
No 70
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=94.63 E-value=0.31 Score=45.80 Aligned_cols=56 Identities=14% Similarity=0.226 Sum_probs=43.7
Q ss_pred CCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEE
Q 048097 108 NPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAF 173 (224)
Q Consensus 108 ~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l 173 (224)
...-.+.+++|++++-+|++.+.-.- ++ ..+++||+++||+|+.+.+.-.| +++.+
T Consensus 140 ~~~f~NaDGD~Livpq~G~l~i~TEf-----G~---L~v~pgei~VIPRG~~frv~l~g--p~rgy 195 (429)
T TIGR01015 140 NRAFYNADGDFLIVPQQGALLITTEF-----GR---LLVEPNEICVIPRGVRFRVTVLE--PARGY 195 (429)
T ss_pred cceeeccCCCEEEEEEeCcEEEEEec-----cc---eEecCCCEEEecCccEEEEeeCC--CceEE
Confidence 44556778999999999999886433 33 68999999999999999886554 55444
No 71
>PF12852 Cupin_6: Cupin
Probab=94.57 E-value=0.18 Score=41.45 Aligned_cols=43 Identities=23% Similarity=0.387 Sum_probs=34.8
Q ss_pred cEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeC
Q 048097 117 TEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNI 165 (224)
Q Consensus 117 ~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~ 165 (224)
.-+.+|++|+.++.+.+.. . ...|++||++++|+|..|.+...
T Consensus 36 ~~fh~V~~G~~~l~~~~~~----~--~~~L~~GDivllp~g~~H~l~~~ 78 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPGGG----E--PIRLEAGDIVLLPRGTAHVLSSD 78 (186)
T ss_pred eEEEEEECCeEEEEEcCCC----C--eEEecCCCEEEEcCCCCeEeCCC
Confidence 5778899999999865421 2 48999999999999999999543
No 72
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=94.38 E-value=0.037 Score=48.54 Aligned_cols=75 Identities=21% Similarity=0.200 Sum_probs=43.1
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEE
Q 048097 95 TSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFA 174 (224)
Q Consensus 95 is~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~ 174 (224)
+.-..+.++.|--..+|+|+ ..|=.|||+|++....-... + ...|.+|-.+.-|....|... .++++++++.
T Consensus 171 ~~gll~kLPagf~g~i~~h~-~~eraVvI~G~~~~~~~~~~---~---~~~L~~GSYf~s~~~~~H~~~-~~e~~~vlyI 242 (251)
T PF14499_consen 171 YTGLLLKLPAGFTGRIHTHA-SNERAVVISGELDYQSYGAS---N---FGTLDPGSYFGSPGHITHGIF-ITEDECVLYI 242 (251)
T ss_dssp E-EEEEE-SSEE--SEEE---S-EEEEEEEEEEEETTEEEE---T---TEEEEE-TT-EE--E-------EESS-EEEEE
T ss_pred eeeEEEEcCCCCcCceeccC-CceEEEEEEeEEEEeecccC---C---CccccCCcccccCCccccccc-ccCCCEEEEE
Confidence 44555667777778999998 68999999999998643221 2 279999999999999999998 7788888886
Q ss_pred EEe
Q 048097 175 GFS 177 (224)
Q Consensus 175 ~~~ 177 (224)
-.+
T Consensus 243 Rtd 245 (251)
T PF14499_consen 243 RTD 245 (251)
T ss_dssp EES
T ss_pred EEC
Confidence 544
No 73
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=94.21 E-value=0.28 Score=41.63 Aligned_cols=88 Identities=19% Similarity=0.144 Sum_probs=62.6
Q ss_pred ccccceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCC---C----CCeeEEE------Ee-cCCC-EEEE
Q 048097 90 LNTLGTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQ---L----NNTLIAK------VL-NKGD-VFVF 154 (224)
Q Consensus 90 L~~lgis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~---~----~~k~~~~------~l-~~GD-v~v~ 154 (224)
.+...+++...-+.+|..+|+|=||+-+-+.-|+.|++.+.-.+--. . +.+.... ++ .+++ .+..
T Consensus 39 yE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~ 118 (200)
T PF07847_consen 39 YEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLY 118 (200)
T ss_pred EECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEc
Confidence 45557899999999999999999999888888999999996543210 0 0011111 12 3334 5566
Q ss_pred cC--CCeeEEEeCCCCcEEEEEEEeC
Q 048097 155 PI--GLIHFQVNIGKTSAVAFAGFSS 178 (224)
Q Consensus 155 P~--G~~H~~~N~G~~~a~~l~~~~s 178 (224)
|. |-+|.+.+.+ +++.++-++..
T Consensus 119 P~~ggNiH~f~a~~-~p~AflDIL~P 143 (200)
T PF07847_consen 119 PTSGGNIHEFTALT-GPCAFLDILAP 143 (200)
T ss_pred cCCCCeeEEEEeCC-CCeEEEEEccC
Confidence 65 4899999987 88999988863
No 74
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=94.20 E-value=0.24 Score=43.79 Aligned_cols=62 Identities=16% Similarity=0.079 Sum_probs=47.2
Q ss_pred cCCCcCCCccC-CCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecC-CCEEEEcCCCeeEEEeCC
Q 048097 103 APYGQNPPHTH-PRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNK-GDVFVFPIGLIHFQVNIG 166 (224)
Q Consensus 103 ~pgg~~ppH~H-p~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~-GDv~v~P~G~~H~~~N~G 166 (224)
-|++.+.+|.| +...|.+.|++|++.+.+.++.+ .......+.+ ++.-++|++..|.+.-..
T Consensus 19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g--~~~~~~~l~~~~~~~~i~p~~wh~v~~~s 82 (287)
T PRK12335 19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDG--EELSEHIFDAENQPPFIEPQAWHRIEAAS 82 (287)
T ss_pred chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCC--CeeeEEEEecCCCCceeCCcceEEEEEcC
Confidence 37788999999 56679999999999998877652 3444455655 456679999999998653
No 75
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=93.89 E-value=0.4 Score=42.64 Aligned_cols=82 Identities=18% Similarity=0.205 Sum_probs=54.9
Q ss_pred ceEEEEEEEcCCC---cCCCccCCCCcEEEE---EEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCC
Q 048097 94 GTSAVRIDYAPYG---QNPPHTHPRATEILV---VLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGK 167 (224)
Q Consensus 94 gis~~~v~l~pgg---~~ppH~Hp~a~Ei~~---Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~ 167 (224)
.+-+....+.||| .-|||.|.+..|..+ +-++.--+++..+- ++.+...++-+|+++.|+-.+|.- .|.
T Consensus 174 qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~p---dETrh~~v~n~~aVisP~wsih~g--~gt 248 (276)
T PRK00924 174 QLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEP---QETRHIVVHNEQAVISPSWSIHSG--VGT 248 (276)
T ss_pred cEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCc---cceeeEEEECCCEEECCCcceecC--cCc
Confidence 4667767789999 369999997777554 22222222332221 333347899999999999999987 456
Q ss_pred CcEEEEEEEeCCC
Q 048097 168 TSAVAFAGFSSQF 180 (224)
Q Consensus 168 ~~a~~l~~~~s~~ 180 (224)
..-.||++..-+|
T Consensus 249 ~~y~fiw~m~gen 261 (276)
T PRK00924 249 SNYTFIWGMAGEN 261 (276)
T ss_pred cccEEEEEecccC
Confidence 6667777765554
No 76
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=93.84 E-value=0.13 Score=38.29 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=22.4
Q ss_pred CeeEEEEecCCCEEEEcCCCeeEEEeCCCC
Q 048097 139 NTLIAKVLNKGDVFVFPIGLIHFQVNIGKT 168 (224)
Q Consensus 139 ~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~ 168 (224)
-+.++.+-++||.+++|+|..|+..|.|..
T Consensus 78 i~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 78 IPVYRFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp S--EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred cccccceECCCCEEEECCCceEEEEeCCce
Confidence 356678899999999999999999999964
No 77
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=93.75 E-value=0.19 Score=40.93 Aligned_cols=82 Identities=20% Similarity=0.299 Sum_probs=46.0
Q ss_pred cccCcccc-cce-EEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeC-CC----CCCeeEEEEecCCCEEEEcCC
Q 048097 85 EQIPGLNT-LGT-SAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTS-NQ----LNNTLIAKVLNKGDVFVFPIG 157 (224)
Q Consensus 85 ~~~p~L~~-lgi-s~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~-~~----~~~k~~~~~l~~GDv~v~P~G 157 (224)
+++|...+ ..+ .+....+.||+.+.||.-+....+- +.+++..+ .+ -+++ ....++|++++|--.
T Consensus 68 ~~lp~~~~~~~~~~~~~s~l~pg~~I~pH~d~~~~~lR------~Hl~L~~p~~~~~~~v~~~--~~~w~~G~~~~fD~s 139 (163)
T PF05118_consen 68 EQLPGVTGGCPLGRVRFSRLPPGTHIKPHRDPTNLRLR------LHLPLIVPNPGCYIRVGGE--TRHWREGECWVFDDS 139 (163)
T ss_dssp CCSHHHHCSTTCEEEEEEEEECTEEEEEE-SS-TTEEE------EEEEEC--STTEEEEETTE--EEB--CTEEEEE-TT
T ss_pred HhCcccccccchhhEEEEEECCCCEECCeeCCCCcceE------EEEEEEcCCCCeEEEECCe--EEEeccCcEEEEeCC
Confidence 45555443 223 3444577999999999887433321 22222222 10 0133 467899999999999
Q ss_pred CeeEEEeCCCCcEEEEE
Q 048097 158 LIHFQVNIGKTSAVAFA 174 (224)
Q Consensus 158 ~~H~~~N~G~~~a~~l~ 174 (224)
..|...|.|+++-+.+.
T Consensus 140 ~~H~~~N~~~~~Rv~L~ 156 (163)
T PF05118_consen 140 FEHEVWNNGDEDRVVLI 156 (163)
T ss_dssp S-EEEEESSSS-EEEEE
T ss_pred EEEEEEeCCCCCEEEEE
Confidence 99999999988765553
No 78
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.59 E-value=0.047 Score=51.79 Aligned_cols=91 Identities=21% Similarity=0.285 Sum_probs=59.1
Q ss_pred CCCeeEEEccccccCc--------cccc-c-eEEEEEEEcC-CC-cCCCccCCCCcEEEEEEecEEEEEEEeCCC-----
Q 048097 74 RLGFNVTNANVEQIPG--------LNTL-G-TSAVRIDYAP-YG-QNPPHTHPRATEILVVLEGTLYVGFVTSNQ----- 136 (224)
Q Consensus 74 ~~g~~v~~~~~~~~p~--------L~~l-g-is~~~v~l~p-gg-~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~----- 136 (224)
..|-++...+.+.|-. |... | +--+-+.+.| |+ -.+|||-. -.-+++-++|+=+..+..+..
T Consensus 285 q~~cSiqllnPqty~drlwq~cevlqeqFgc~vGaNvYLTPagSqGfaPHyDd-IeaFvlQvEGrK~Wrly~P~~~~eel 363 (629)
T KOG3706|consen 285 QKGCSIQLLNPQTYKDRLWQICEVLQEQFGCLVGANVYLTPAGSQGFAPHYDD-IEAFVLQVEGRKHWRLYHPTVPLEEL 363 (629)
T ss_pred hcCceEEeeCchhHHHHHHHHHHHHHHHhccccccceeecCCCCCCCCCchhh-hhhhhheeccceeeEeecCCCcHhhh
Confidence 4566777777766532 0000 1 1223355555 43 48999984 566777899987776654430
Q ss_pred ------------CCCeeEEEEecCCCEEEEcCCCeeEEEeC
Q 048097 137 ------------LNNTLIAKVLNKGDVFVFPIGLIHFQVNI 165 (224)
Q Consensus 137 ------------~~~k~~~~~l~~GDv~v~P~G~~H~~~N~ 165 (224)
-|..++...|++||+++||+|.+|.....
T Consensus 364 ~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t~ 404 (629)
T KOG3706|consen 364 ALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADTP 404 (629)
T ss_pred hhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeecccc
Confidence 03456678999999999999999987543
No 79
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=93.35 E-value=0.29 Score=42.77 Aligned_cols=44 Identities=23% Similarity=0.220 Sum_probs=35.4
Q ss_pred CcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCC
Q 048097 116 ATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGK 167 (224)
Q Consensus 116 a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~ 167 (224)
+-++.++++|++.+... ++ ...+++||++++|+|.+|......+
T Consensus 49 ~~~i~~~~~G~~~~~~~------~~--~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 49 GYILNLTIRGQGVIFNG------GR--AFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred ceEEEEEEeccEEEecC------Ce--eEecCCCCEEEECCCCceeeccCCC
Confidence 46889999999998642 33 4899999999999999998765443
No 80
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=92.13 E-value=1.1 Score=39.10 Aligned_cols=66 Identities=12% Similarity=0.053 Sum_probs=45.5
Q ss_pred ceEEEEEEEcCCCcC-----CCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCC
Q 048097 94 GTSAVRIDYAPYGQN-----PPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGK 167 (224)
Q Consensus 94 gis~~~v~l~pgg~~-----ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~ 167 (224)
++.+.++...+..+. ..|.+.+.-.++++++|++.+... ++ ...+++||++++|.+.+|.+.-.+.
T Consensus 44 ~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~~------g~--~~~l~~G~~~l~~~~~p~~~~~~~~ 114 (302)
T PRK09685 44 GLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQD------DR--QVQLAAGDITLIDASRPCSIYPQGL 114 (302)
T ss_pred CEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEEC------Ce--EEEEcCCCEEEEECCCCcEeecCCC
Confidence 456666666654321 234444445677889999988753 33 4789999999999999998765443
No 81
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=91.41 E-value=0.34 Score=41.58 Aligned_cols=57 Identities=18% Similarity=0.377 Sum_probs=47.1
Q ss_pred cCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEe
Q 048097 103 APYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVN 164 (224)
Q Consensus 103 ~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N 164 (224)
.|+..---|..+ ..|++|-.+|.....+++. ++....++++||++..|..++|.-+-
T Consensus 41 GPN~RkdyHiee-geE~FyQ~KGdMvLKVie~----g~~rDivI~qGe~flLParVpHSPqR 97 (279)
T KOG3995|consen 41 GPNTRKDYHIEE-GEEVFYQLKGDMVLKVLEQ----GKHRDVVIRQGEIFLLPARVPHSPQR 97 (279)
T ss_pred CCCcccccccCC-cchhheeecCceEEeeecc----CcceeeEEecCcEEEeccCCCCChhh
Confidence 455556778887 7999999999999998876 45557889999999999999998643
No 82
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=91.24 E-value=1 Score=37.19 Aligned_cols=77 Identities=25% Similarity=0.276 Sum_probs=48.9
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEe--CC----CCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCC
Q 048097 95 TSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVT--SN----QLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKT 168 (224)
Q Consensus 95 is~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~--~~----~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~ 168 (224)
+++..+++.||...|+|-|- -.-++=|+.|.-+-.+.. .. ++ .. .+...+|++-.-| |.+|...|+|..
T Consensus 73 ltV~~~t~~PG~~~p~HnH~-~wglVgil~G~E~n~~y~~~~~~~~~P~-~q--dk~~apgeV~lSp-gdihsv~n~~sd 147 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNHL-MWGLVGILWGGETNFIYPLAGEEVDEPE-RQ--DKFAAPGEVHLSP-GDIHSVANTGSD 147 (191)
T ss_pred EEEEEEEeCCCcccCCcccc-hheeeeeeecccccceecccCCCCCCcc-hh--hhhcCcceEeeCC-CCeeeecccCCC
Confidence 58899999999999999994 677777888854433221 11 11 11 2456677777333 777777777665
Q ss_pred cEEEEEEE
Q 048097 169 SAVAFAGF 176 (224)
Q Consensus 169 ~a~~l~~~ 176 (224)
....|-++
T Consensus 148 rs~aiHvy 155 (191)
T COG5553 148 RSGAIHVY 155 (191)
T ss_pred ccceEEEE
Confidence 44444444
No 83
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=91.21 E-value=0.75 Score=39.02 Aligned_cols=85 Identities=20% Similarity=0.201 Sum_probs=63.8
Q ss_pred CCeeEEEccccccCcccccceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEE
Q 048097 75 LGFNVTNANVEQIPGLNTLGTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 154 (224)
Q Consensus 75 ~g~~v~~~~~~~~p~L~~lgis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~ 154 (224)
.|.++..+...+ .-..+++++.+.||..+|-|+|- +-|.+.|++|.. .+++ -.+-+||...-
T Consensus 113 ~G~rv~~v~l~~-----dds~~V~llki~~g~s~P~HtH~-G~E~t~vl~G~~----sde~--------G~y~vgD~~~~ 174 (216)
T COG3806 113 PGGRVEPVRLPT-----DDSRRVALLKIEPGRSFPDHTHV-GIERTAVLEGAF----SDEN--------GEYLVGDFTLA 174 (216)
T ss_pred CCcceeecccCC-----CCCceeEEEEeccCccccccccc-ceEEEEEEeecc----ccCC--------CccccCceeec
Confidence 455555443322 22578999999999999999996 799999999975 4444 26788999999
Q ss_pred cCCCeeEEEeCCCCcEEEEEEEe
Q 048097 155 PIGLIHFQVNIGKTSAVAFAGFS 177 (224)
Q Consensus 155 P~G~~H~~~N~G~~~a~~l~~~~ 177 (224)
+.+.-|.-.-...++...++++.
T Consensus 175 d~~v~H~piv~~~~eClcl~al~ 197 (216)
T COG3806 175 DGTVQHSPIVLPPGECLCLAALD 197 (216)
T ss_pred CCccccccccCCCCCceEEEEcC
Confidence 99999986555566777777764
No 84
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=91.14 E-value=0.91 Score=34.07 Aligned_cols=67 Identities=21% Similarity=0.187 Sum_probs=42.3
Q ss_pred EEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEE
Q 048097 97 AVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFA 174 (224)
Q Consensus 97 ~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~ 174 (224)
+..+.++||+.......+...-++||++|++.+. . .+ ..+.+|+++++..|..=.+.+.+ +.+.++.
T Consensus 1 y~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~---~----~~---~~~~~~~~~~l~~g~~i~~~a~~-~~a~~ll 67 (104)
T PF05726_consen 1 YLDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG---G----EE---DPLEAGQLVVLEDGDEIELTAGE-EGARFLL 67 (104)
T ss_dssp EEEEEE-TT-EEEEEEETT-EEEEEEEESEEEET---T----TT---EEEETTEEEEE-SECEEEEEESS-SSEEEEE
T ss_pred CEEEEECCCCEEEeecCCCCEEEEEEEECcEEEC---C----Cc---ceECCCcEEEECCCceEEEEECC-CCcEEEE
Confidence 3567889998654333334567899999998663 1 22 57899999999966555555543 6666653
No 85
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.07 E-value=2.9 Score=38.56 Aligned_cols=73 Identities=12% Similarity=0.067 Sum_probs=50.3
Q ss_pred cceEEEEEEEcCCCcC-CCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEE
Q 048097 93 LGTSAVRIDYAPYGQN-PPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAV 171 (224)
Q Consensus 93 lgis~~~v~l~pgg~~-ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~ 171 (224)
.|+.+..-.+. -+|. -.-+..+.+|++++-+|++++--.- + ..++++||+.+||+|.....+-.+.+ +.
T Consensus 123 ~g~~i~~y~~n-~sm~~~~f~NADge~Livpq~G~l~l~te~-----G---~l~v~pgeiavIPRG~~frve~~~~~-~r 192 (427)
T COG3508 123 DGVAIHVYKVN-ESMTKRFFRNADGELLIVPQQGELRLKTEL-----G---VLEVEPGEIAVIPRGTTFRVELKDGE-AR 192 (427)
T ss_pred CceEEEEEEcc-ccchhhhhhcCCCCEEEEeecceEEEEEee-----c---eEEecCCcEEEeeCCceEEEEecCCc-eE
Confidence 35554433333 3444 5557788899999999999885432 2 37899999999999999888765444 44
Q ss_pred EEEE
Q 048097 172 AFAG 175 (224)
Q Consensus 172 ~l~~ 175 (224)
.+..
T Consensus 193 gy~~ 196 (427)
T COG3508 193 GYGC 196 (427)
T ss_pred EEEE
Confidence 4433
No 86
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=90.79 E-value=2.3 Score=31.87 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=33.1
Q ss_pred CCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEe
Q 048097 115 RATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVN 164 (224)
Q Consensus 115 ~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N 164 (224)
.+.|++-|++|++++.+-+++ . ++.+++|+.|.+|++.---++-
T Consensus 40 ~~~E~M~vvsG~l~V~lpg~~----e--w~~~~aGesF~VpanssF~v~v 83 (94)
T PF06865_consen 40 SAPERMEVVSGELEVKLPGED----E--WQTYSAGESFEVPANSSFDVKV 83 (94)
T ss_dssp SS-EEEEEEESEEEEEETT-S----S---EEEETT-EEEE-TTEEEEEEE
T ss_pred CCCEEEEEEEeEEEEEcCCCc----c--cEEeCCCCeEEECCCCeEEEEE
Confidence 468999999999999986443 2 6899999999999998877765
No 87
>PRK10579 hypothetical protein; Provisional
Probab=90.30 E-value=2.6 Score=31.60 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=36.8
Q ss_pred CCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEe
Q 048097 115 RATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVN 164 (224)
Q Consensus 115 ~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N 164 (224)
.+.|++-|++|++++.+-+++ . ++.+++|+.|-+|.+.-.-++.
T Consensus 40 ~~~E~MeivsG~l~V~Lpg~~----e--w~~~~aG~sF~VpanssF~l~v 83 (94)
T PRK10579 40 AEPEEMTVISGALNVLLPGAT----D--WQVYEAGEVFNVPGHSEFHLQV 83 (94)
T ss_pred CCcEEEEEEeeEEEEECCCCc----c--cEEeCCCCEEEECCCCeEEEEE
Confidence 478999999999999886543 2 6899999999999998777654
No 88
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=90.12 E-value=1.8 Score=40.36 Aligned_cols=59 Identities=14% Similarity=0.084 Sum_probs=41.8
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEE
Q 048097 94 GTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQV 163 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~ 163 (224)
.+.+.++++..+.. ++..+..++++|++|++++.. . +. +..|++|+++++|++......
T Consensus 320 ~F~~~~~~l~~~~~---~~~~~~~~Illv~~G~~~i~~--~----~~--~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 320 DFAFSLHDLSDQPT---TLSQQSAAILFCVEGEAVLWK--G----EQ--QLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred CcEEEEEEECCceE---EecCCCcEEEEEEcceEEEEe--C----Ce--EEEECCCCEEEEeCCCccEEE
Confidence 46677777765422 222246799999999999852 2 22 378999999999998877665
No 89
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=89.89 E-value=5.8 Score=28.88 Aligned_cols=63 Identities=17% Similarity=0.052 Sum_probs=43.0
Q ss_pred CCCcCCCccCCCC-cEEEEEEecEEEEEEEeCCCCCCe-eEEEEecCCCEEEEcCCCeeEEEeCCCC
Q 048097 104 PYGQNPPHTHPRA-TEILVVLEGTLYVGFVTSNQLNNT-LIAKVLNKGDVFVFPIGLIHFQVNIGKT 168 (224)
Q Consensus 104 pgg~~ppH~Hp~a-~Ei~~Vl~G~~~v~~v~~~~~~~k-~~~~~l~~GDv~v~P~G~~H~~~N~G~~ 168 (224)
|.++...|.-..+ -..+.|++|++.+...++.+ +. .....+.+|+..++++...|.+.-.+++
T Consensus 12 P~~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~--~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D 76 (82)
T PF09313_consen 12 PAALLERHNTKAGTWGKLRVLEGELKFYGLDEEG--EEPEEEVFIPAGQPPVIEPQQWHRVEPLSDD 76 (82)
T ss_dssp -GGGGSSBCCSTTEEEEEEEEESEEEEEEESSTT---SESEEEEEETTEEEEE-TT-EEEEEESSTT
T ss_pred cHHHHhhcCCCCCeEEEEEEEeeEEEEEEECCCC--CceeEEEEeCCCCCceeCCCceEEEEECCCC
Confidence 3455666644332 25677999999998887642 22 2246789999999999999999877664
No 90
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=88.47 E-value=2.4 Score=39.16 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=51.1
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEE
Q 048097 94 GTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAF 173 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l 173 (224)
.+++.+++++.|..--.-.- +..-++.|++|++++.-.+. . ...+++|||++||+...-.+ +..+++...+
T Consensus 332 eF~v~~~~v~~g~~~~~~~~-~~~SIllv~~G~g~l~~~t~----~---~~~v~rG~V~fI~a~~~i~~-~~~sd~~~~y 402 (411)
T KOG2757|consen 332 EFAVLETKVPTGESYKFPGV-DGPSILLVLKGSGILKTDTD----S---KILVNRGDVLFIPANHPIHL-SSSSDPFLGY 402 (411)
T ss_pred ceeEEEeecCCCceEEeecC-CCceEEEEEecceEEecCCC----C---ceeeccCcEEEEcCCCCcee-eccCcceeee
Confidence 56788888888664222222 36789999999999975421 2 37899999999999876644 3445555555
Q ss_pred EEEe
Q 048097 174 AGFS 177 (224)
Q Consensus 174 ~~~~ 177 (224)
-+|.
T Consensus 403 rAf~ 406 (411)
T KOG2757|consen 403 RAFS 406 (411)
T ss_pred eccc
Confidence 4443
No 91
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=88.34 E-value=2.3 Score=35.98 Aligned_cols=80 Identities=24% Similarity=0.199 Sum_probs=48.3
Q ss_pred EEEEcCCCcCCCccCCCCcEEEEEE-ecEEEEEEEeCC--C------------CCCeeE-----EEEecCCCEEEEcCCC
Q 048097 99 RIDYAPYGQNPPHTHPRATEILVVL-EGTLYVGFVTSN--Q------------LNNTLI-----AKVLNKGDVFVFPIGL 158 (224)
Q Consensus 99 ~v~l~pgg~~ppH~Hp~a~Ei~~Vl-~G~~~v~~v~~~--~------------~~~k~~-----~~~l~~GDv~v~P~G~ 158 (224)
.+.+.+|.+.|.|.|++-.|=++=- .|++.+.+.... . .|.+.. ...|+||+.+-+|+|+
T Consensus 90 iM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg~ 169 (225)
T COG3822 90 IMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPGL 169 (225)
T ss_pred eEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCCc
Confidence 3566789999999999755544322 233444332111 0 011110 2579999999999999
Q ss_pred eeEEEeCCCCcEEEEEEEeCCC
Q 048097 159 IHFQVNIGKTSAVAFAGFSSQF 180 (224)
Q Consensus 159 ~H~~~N~G~~~a~~l~~~~s~~ 180 (224)
.|++..-+.. +++.-.++-|
T Consensus 170 ~HsFwae~g~--vlvgEvSsvn 189 (225)
T COG3822 170 YHSFWAEEGG--VLVGEVSSVN 189 (225)
T ss_pred eeeeeecCCc--EEEEEEeecc
Confidence 9999865443 4444444433
No 92
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=88.09 E-value=2.2 Score=36.92 Aligned_cols=72 Identities=17% Similarity=0.075 Sum_probs=54.5
Q ss_pred ccceEEEEEEEcCCCcCCC-ccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcE
Q 048097 92 TLGTSAVRIDYAPYGQNPP-HTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSA 170 (224)
Q Consensus 92 ~lgis~~~v~l~pgg~~pp-H~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a 170 (224)
..++-+..+.++||+.+|- -+|- -+-=+|||||++...+.. . ...+++||.+..-+-.+.+.+.-|....
T Consensus 179 r~Dmhv~ivsFePGa~ip~aEtHv-mEHGlyvLeGk~vYrLn~------d--wv~V~aGD~mwm~A~cpQacyagG~g~f 249 (264)
T COG3257 179 RFDMHVHIVSFEPGASIPYAETHV-MEHGLYVLEGKGVYRLNN------N--WVPVEAGDYIWMGAYCPQACYAGGRGAF 249 (264)
T ss_pred CcceEEEEEEecCCcccchhhhhh-hhcceEEEecceEEeecC------c--eEEeecccEEEeeccChhhhccCCCCce
Confidence 3478889999999998754 2332 233489999999887642 2 5799999999999999999888777644
Q ss_pred EE
Q 048097 171 VA 172 (224)
Q Consensus 171 ~~ 172 (224)
..
T Consensus 250 rY 251 (264)
T COG3257 250 RY 251 (264)
T ss_pred EE
Confidence 33
No 93
>PLN02288 mannose-6-phosphate isomerase
Probab=87.40 E-value=2 Score=40.22 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=40.1
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCC
Q 048097 94 GTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGL 158 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~ 158 (224)
.+++.++++.++.......+ +..++++|++|++++... + +. ....|++|+++++|++.
T Consensus 333 eF~v~~~~l~~~~~~~~~~~-~gp~Illv~~G~~~i~~~--~---~~-~~~~l~~G~~~fv~a~~ 390 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPAV-PGPSVFLVIEGEGVLSTG--S---SE-DGTAAKRGDVFFVPAGT 390 (394)
T ss_pred ceEEEEEEeCCCCeEeecCC-CCCEEEEEEcCEEEEecC--C---cc-ceEEEeceeEEEEeCCC
Confidence 57888888887753222112 367999999999998532 1 11 12569999999999864
No 94
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=87.34 E-value=3.5 Score=36.79 Aligned_cols=60 Identities=25% Similarity=0.266 Sum_probs=42.5
Q ss_pred cceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEE
Q 048097 93 LGTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQV 163 (224)
Q Consensus 93 lgis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~ 163 (224)
-.+++.++++....... .+ ....+++|++|++++.. . +. +..|++|+.+++|++.-....
T Consensus 233 ~~F~~~~~~~~~~~~~~--~~-~~~~il~v~~G~~~i~~--~----~~--~~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 233 EYFSVYKWDISGKAEFI--QQ-QSALILSVLEGSGRIKS--G----GK--TLPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CCeEEEEEEeCCceeec--cC-CCcEEEEEEcceEEEEE--C----CE--EEEEecccEEEEccCCccEEE
Confidence 35778888876442111 22 36789999999998853 2 22 478999999999999876654
No 95
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=86.25 E-value=8.2 Score=32.62 Aligned_cols=124 Identities=17% Similarity=0.130 Sum_probs=74.5
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEE
Q 048097 94 GTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAF 173 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l 173 (224)
+.......+++|..+-..=.+ ...+.+|++|.+.+...++++ ++.....+.+||++-+..+..+...-.-.++..++
T Consensus 35 ~~~~~~~~~~kge~l~~~Gd~-~~~ly~I~~G~vkl~~~~~~G--~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~ 111 (230)
T PRK09391 35 GLVASEFSYKKGEEIYGEGEP-ADYVYQVESGAVRTYRLLSDG--RRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVR 111 (230)
T ss_pred cceeeeEEECCCCEEECCCCC-CCeEEEEEeCEEEEEEECCCC--cEEEEEEecCCceecccCCCcCCeEEEEcCceEEE
Confidence 556677788888865433233 578999999999998877663 44455667999988766554433222223344443
Q ss_pred EEEe--------CCCCceee----------------------------chhhhh------cC----CCCCCHHHHHhhcC
Q 048097 174 AGFS--------SQFPGVIT----------------------------IADTVF------GA----NPPINPDFLGKAFQ 207 (224)
Q Consensus 174 ~~~~--------s~~pg~~~----------------------------~~~~lf------~~----~p~~p~~vLa~af~ 207 (224)
.+. ..+|.... ++..|. +. ..+++.+-||..+|
T Consensus 112 -~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~~g~~~~i~i~lt~~~IA~~lG 190 (230)
T PRK09391 112 -LIKRRSLEQAAATDVDVARALLSLTAGGLRHAQDHMLLLGRKTAMERVAAFLLEMDERLGGAGMMALPMSRRDIADYLG 190 (230)
T ss_pred -EEEHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCEEEecCCHHHHHHHHC
Confidence 232 12343210 111111 10 12367889999999
Q ss_pred CCHHHHHHhhhhhc
Q 048097 208 LDPKIVKDLQDKFI 221 (224)
Q Consensus 208 ~~~~~v~~l~~~~~ 221 (224)
+..+++.++.+++.
T Consensus 191 isretlsR~L~~L~ 204 (230)
T PRK09391 191 LTIETVSRALSQLQ 204 (230)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999888766554
No 96
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=85.98 E-value=2 Score=39.75 Aligned_cols=64 Identities=27% Similarity=0.280 Sum_probs=41.9
Q ss_pred EEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeC-CC-------------CCCeeEEEEecCCCEEEEcCCCeeEEEeC
Q 048097 101 DYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTS-NQ-------------LNNTLIAKVLNKGDVFVFPIGLIHFQVNI 165 (224)
Q Consensus 101 ~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~-~~-------------~~~k~~~~~l~~GDv~v~P~G~~H~~~N~ 165 (224)
..++||.+.+|+-+. +-+++-..|+=+..+... +. ........++.|||+.++|+|..|+-...
T Consensus 125 ~a~~GGgvg~H~D~Y-DVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae 202 (383)
T COG2850 125 FAAPGGGVGPHFDQY-DVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAE 202 (383)
T ss_pred EecCCCccCccccch-heeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCccc
Confidence 457899999999985 555555555444443321 00 00112235799999999999999998655
No 97
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=84.99 E-value=11 Score=29.28 Aligned_cols=66 Identities=17% Similarity=0.121 Sum_probs=40.9
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCC
Q 048097 94 GTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGK 167 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~ 167 (224)
++.+.++.....-.+...-+.+.--+.+.++|+..+... ++ ...+.+||+++++.+.++.+...+.
T Consensus 33 ~~~l~~~~~~~~~~vr~~~~~~~~~l~~~~~G~~~~~~~------g~--~~~~~pg~~~l~d~~~~~~~~~~~~ 98 (172)
T PF14525_consen 33 GLRLSRISYGAQRRVRSDAPDDHYLLVLPLSGSARIEQG------GR--EVELAPGDVVLLDPGQPYRLEFSAG 98 (172)
T ss_pred CEEEEEEEcCCCEEEECCCCCCEEEEEEEccCCEEEEEC------CE--EEEEcCCeEEEEcCCCCEEEEECCC
Confidence 356666665533322111122234455677777776642 33 5899999999999999988765543
No 98
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=84.22 E-value=3.2 Score=28.57 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=32.8
Q ss_pred EEcCCCcC-CCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEE
Q 048097 101 DYAPYGQN-PPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF 152 (224)
Q Consensus 101 ~l~pgg~~-ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~ 152 (224)
.+.+|..+ ..+-+ ...+.+|++|.+.+...+.++ .+.....+.+||++
T Consensus 3 ~~~~g~~i~~~g~~--~~~~~~i~~G~v~~~~~~~~~--~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 3 TYKKGEVIYRQGDP--CDHIYIILSGEVKVSSINEDG--KEQIIFFLGPGDIF 51 (91)
T ss_dssp EESTTEEEEETTSB--ESEEEEEEESEEEEEEETTTS--EEEEEEEEETTEEE
T ss_pred EECCCCEEEeCCCc--CCEEEEEEECceEEEeceecc--eeeeecceeeeccc
Confidence 45555533 33333 589999999999998877652 23335678888887
No 99
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=84.18 E-value=11 Score=30.75 Aligned_cols=54 Identities=17% Similarity=0.173 Sum_probs=38.2
Q ss_pred EEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEE
Q 048097 98 VRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 154 (224)
Q Consensus 98 ~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~ 154 (224)
....+++|..+-..=.+ ...+.+|++|.+.+...+.++ ++.....+.+||++-.
T Consensus 21 ~~~~~~kg~~l~~~g~~-~~~~y~V~~G~v~~~~~~~~g--~~~~~~~~~~g~~~g~ 74 (211)
T PRK11753 21 HIHKYPAKSTLIHAGEK-AETLYYIVKGSVAVLIKDEEG--KEMILSYLNQGDFIGE 74 (211)
T ss_pred eEEEeCCCCEEEeCCCC-CCeEEEEEeCEEEEEEECCCC--CEEEEEEcCCCCEEee
Confidence 45678888865433233 678999999999997766552 4445567899999844
No 100
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=83.84 E-value=4.9 Score=27.67 Aligned_cols=56 Identities=16% Similarity=0.081 Sum_probs=40.2
Q ss_pred EEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEE
Q 048097 100 IDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQV 163 (224)
Q Consensus 100 v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~ 163 (224)
..+.||.....+... ..+ +.|.+|++.++.... ...+.|++||.+.+++|.--++.
T Consensus 2 ~~L~~g~~~~lr~~~-~~~-l~v~~G~vWlT~~g~------~~D~~L~~G~~l~l~~g~~vvl~ 57 (63)
T PF11142_consen 2 FELAPGETLSLRAAA-GQR-LRVESGRVWLTREGD------PDDYWLQAGDSLRLRRGGRVVLS 57 (63)
T ss_pred EEeCCCceEEeEcCC-CcE-EEEccccEEEECCCC------CCCEEECCCCEEEeCCCCEEEEE
Confidence 356677776666443 344 889999998876432 22489999999999999766654
No 101
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=83.43 E-value=20 Score=31.54 Aligned_cols=96 Identities=23% Similarity=0.270 Sum_probs=50.2
Q ss_pred eEEEccccccCcccccceEEEEEEEcCCC---cCCCccCCCC--------cEEEEEE----ecEEEEEEEeCCCCCCeeE
Q 048097 78 NVTNANVEQIPGLNTLGTSAVRIDYAPYG---QNPPHTHPRA--------TEILVVL----EGTLYVGFVTSNQLNNTLI 142 (224)
Q Consensus 78 ~v~~~~~~~~p~L~~lgis~~~v~l~pgg---~~ppH~Hp~a--------~Ei~~Vl----~G~~~v~~v~~~~~~~k~~ 142 (224)
.|......+.+. .-.+-+..+. .|+| .-|||.|++. +|+.|-. +|-+.-.+.+..+..++
T Consensus 136 ~V~~~i~~~~~~--~~~Lv~get~-~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~-- 210 (261)
T PF04962_consen 136 TVRNIIDPNVPP--ASRLVVGETI-TPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDE-- 210 (261)
T ss_dssp EEEEEESTTT-----SS-EEEEEE-ETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEE--
T ss_pred EEEEeeCCCCcc--cceEEEEEEE-eCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcE--
Confidence 355555555542 2245666655 6666 3699999863 5666542 24333223332221123
Q ss_pred EEEecCCCEEEEcCCCeeEEEe-CCCCcEEEEEEEeCCC
Q 048097 143 AKVLNKGDVFVFPIGLIHFQVN-IGKTSAVAFAGFSSQF 180 (224)
Q Consensus 143 ~~~l~~GDv~v~P~G~~H~~~N-~G~~~a~~l~~~~s~~ 180 (224)
...++-||++.+|+|. |-+.. .|.. ..++.+....+
T Consensus 211 ~~~V~~~d~V~iP~gy-Hp~~aapGy~-~Yylw~maG~~ 247 (261)
T PF04962_consen 211 HYVVRNGDAVLIPSGY-HPVVAAPGYD-MYYLWVMAGEN 247 (261)
T ss_dssp EEEEETTEEEEESTTB--SEEEEEESS-EEEEEEEESSS
T ss_pred EEEEECCCEEEeCCCC-CCcCcCCCcC-cEEEEEEEcCC
Confidence 5789999999999993 33322 3444 44777776665
No 102
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.13 E-value=5.2 Score=29.47 Aligned_cols=41 Identities=29% Similarity=0.285 Sum_probs=33.5
Q ss_pred CcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEE
Q 048097 116 ATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQ 162 (224)
Q Consensus 116 a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~ 162 (224)
+.|+..|+.|.+++.+.++. . +++..+|+.|.+|...-..+
T Consensus 41 ~~E~Mtvv~Gal~v~lpgs~----d--Wq~~~~Ge~F~VpgnS~F~l 81 (94)
T COG3123 41 APEEMTVVSGALTVLLPGSD----D--WQVYTAGEVFNVPGNSEFDL 81 (94)
T ss_pred CceEEEEEeeEEEEEcCCCc----c--cEEecCCceEEcCCCCeEEE
Confidence 67999999999999886543 2 68999999999998765444
No 103
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=81.05 E-value=7.7 Score=31.59 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=36.9
Q ss_pred EEEEcCCCcCCCccCC-CCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEc
Q 048097 99 RIDYAPYGQNPPHTHP-RATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFP 155 (224)
Q Consensus 99 ~v~l~pgg~~ppH~Hp-~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P 155 (224)
.+.+++|..+-.-=-+ ....+++|++|.+.+...++++ .+.....+.+||++=.+
T Consensus 8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G--~e~~l~~~~~Gd~~G~~ 63 (202)
T PRK13918 8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEG--NALTLRYVRPGEYFGEE 63 (202)
T ss_pred eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCC--CEEEEEEecCCCeechH
Confidence 3566777644222121 2478999999999998887663 45555677999988543
No 104
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=80.35 E-value=11 Score=26.63 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=37.3
Q ss_pred EEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEc
Q 048097 98 VRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFP 155 (224)
Q Consensus 98 ~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P 155 (224)
....+.+|..+ .+.......+.+|++|.+.+...+.++ +......+.+||.+-..
T Consensus 18 ~~~~~~~g~~l-~~~g~~~~~~y~v~~G~v~~~~~~~~g--~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 18 EPVRYPAGEVI-IRQGDVGDSFYIILSGEVRVYKVLEDG--REQILGILGPGDFFGEL 72 (120)
T ss_pred eEEEeCCCCEE-EeCCCcCCcEEEEEeeEEEEEEECCCC--ceEEEEeecCCceechh
Confidence 34567777754 233334678999999999987665442 45556788999987543
No 105
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=79.57 E-value=24 Score=28.18 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=51.4
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEec-EEEEEEEeCCCCCCeeEEEEe----cCCC--EEEEcCCCeeEEEeCCC
Q 048097 95 TSAVRIDYAPYGQNPPHTHPRATEILVVLEG-TLYVGFVTSNQLNNTLIAKVL----NKGD--VFVFPIGLIHFQVNIGK 167 (224)
Q Consensus 95 is~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G-~~~v~~v~~~~~~~k~~~~~l----~~GD--v~v~P~G~~H~~~N~G~ 167 (224)
.+....-+.++.....|.= +++|+.+...| .+++.+++++ ++..+..| .+|+ .+++|+|.....+..+.
T Consensus 41 ~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~d---g~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~ 116 (139)
T PF06172_consen 41 STSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPD---GSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPE 116 (139)
T ss_dssp -EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTT---STEEEEEESSTTCTTEBSEEEE-TTSEEEEEECES
T ss_pred ceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCC---CCeEEEEECCCCCCCceEEEEECCCEEEEccccCC
Confidence 4444455777666666654 68999999999 6888888887 45445555 3443 68999999999865555
Q ss_pred CcEEEEEEE
Q 048097 168 TSAVAFAGF 176 (224)
Q Consensus 168 ~~a~~l~~~ 176 (224)
..-.+++..
T Consensus 117 ~~y~Lvsc~ 125 (139)
T PF06172_consen 117 GDYSLVSCT 125 (139)
T ss_dssp SSEEEEEEE
T ss_pred CCEEEEEEE
Confidence 555555443
No 106
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=75.51 E-value=13 Score=26.07 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=35.7
Q ss_pred EEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEE
Q 048097 98 VRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 154 (224)
Q Consensus 98 ~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~ 154 (224)
....+++|..+-.. ......+.++++|.+.+...++++ .+.....+.+||++-.
T Consensus 18 ~~~~~~~g~~l~~~-~~~~~~~~~i~~G~v~~~~~~~~g--~~~~~~~~~~g~~~g~ 71 (115)
T cd00038 18 EERRFPAGEVIIRQ-GDPADSLYIVLSGSVEVYKLDEDG--REQIVGFLGPGDLFGE 71 (115)
T ss_pred eeeeeCCCCEEEcC-CCCCCeEEEEEeCEEEEEEECCCC--cEEEEEecCCccCcCh
Confidence 44567777755222 122478999999999998766542 3444567889988733
No 107
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=73.01 E-value=22 Score=32.28 Aligned_cols=59 Identities=20% Similarity=0.187 Sum_probs=42.2
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEE
Q 048097 94 GTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQV 163 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~ 163 (224)
.+++.++++..-.... +.+...+++|++|++++... ++ +..|++|+.+++|+...-+..
T Consensus 241 ~F~l~~~~i~~~~~~~---~~~~~~il~v~eG~~~l~~~------~~--~~~l~~G~s~~ipa~~~~~~i 299 (312)
T COG1482 241 DFALYKWDISGTAEFI---KQESFSILLVLEGEGTLIGG------GQ--TLKLKKGESFFIPANDGPYTI 299 (312)
T ss_pred ceEEEEEeccChhhhc---cCCCcEEEEEEcCeEEEecC------CE--EEEEcCCcEEEEEcCCCcEEE
Confidence 5778888777522111 12368999999999988643 22 589999999999998666554
No 108
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=72.93 E-value=13 Score=31.22 Aligned_cols=54 Identities=4% Similarity=-0.068 Sum_probs=37.1
Q ss_pred EEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEc
Q 048097 99 RIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFP 155 (224)
Q Consensus 99 ~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P 155 (224)
...+++|..+-.. ......+.+|++|.+.+...+.++ .+.....+.+||++-..
T Consensus 33 ~~~~~kge~l~~~-G~~~~~~y~V~~G~v~v~~~~~~G--~e~~~~~~~~g~~~G~~ 86 (226)
T PRK10402 33 LFHFLAREYIVQE-GQQPSYLFYLTRGRAKLYATLANG--KVSLIDFFAAPCFIGEI 86 (226)
T ss_pred heeeCCCCEEEcC-CCCCceEEEEEeCEEEEEEECCCC--CEeeeeecCCCCeEEee
Confidence 3466777654222 223578999999999998887663 44445678999988643
No 109
>PLN02868 acyl-CoA thioesterase family protein
Probab=69.11 E-value=18 Score=33.55 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=37.5
Q ss_pred EEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEE
Q 048097 98 VRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 154 (224)
Q Consensus 98 ~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~ 154 (224)
....+++|.++-.-=. ....+++|++|++++...+.+ ++..-..+++||++-.
T Consensus 32 ~~~~~~~Ge~I~~~Gd-~~~~lyiI~~G~V~v~~~~~~---ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 32 VPKRYGKGEYVVREGE-PGDGLYFIWKGEAEVSGPAEE---ESRPEFLLKRYDYFGY 84 (413)
T ss_pred eEEEECCCCEEEeCCC-cCceEEEEEeCEEEEEEECCC---CcEEEEEeCCCCEeeh
Confidence 3457777776533323 367899999999999776655 3444567899998874
No 110
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=67.39 E-value=3 Score=37.29 Aligned_cols=19 Identities=37% Similarity=0.516 Sum_probs=17.7
Q ss_pred EEEecCCCEEEEcCCCeeE
Q 048097 143 AKVLNKGDVFVFPIGLIHF 161 (224)
Q Consensus 143 ~~~l~~GDv~v~P~G~~H~ 161 (224)
...+++||++++|+|.+|.
T Consensus 152 ~v~v~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 152 RIKLKPGDFFYVPSGTPHA 170 (302)
T ss_pred ccccCCCCEEEeCCCCccc
Confidence 4689999999999999998
No 111
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=66.90 E-value=7.7 Score=29.03 Aligned_cols=9 Identities=33% Similarity=0.449 Sum_probs=5.2
Q ss_pred CchhHHHHH
Q 048097 1 MKAIQFLIG 9 (224)
Q Consensus 1 m~~~~~~~~ 9 (224)
|++..|++|
T Consensus 1 MaSK~~llL 9 (95)
T PF07172_consen 1 MASKAFLLL 9 (95)
T ss_pred CchhHHHHH
Confidence 786555444
No 112
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=66.73 E-value=33 Score=27.98 Aligned_cols=66 Identities=20% Similarity=0.226 Sum_probs=38.8
Q ss_pred CccCCCCcEEEEEEecEE-EEEEEeCCCC---CCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEE
Q 048097 110 PHTHPRATEILVVLEGTL-YVGFVTSNQL---NNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFAG 175 (224)
Q Consensus 110 pH~Hp~a~Ei~~Vl~G~~-~v~~v~~~~~---~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~~ 175 (224)
.=.||.++|.++-+.|+. .+-++.++.+ -+++..+.+.+|+.+.+-+|.+|.-.-.=+++..++.+
T Consensus 74 lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~~~~~f~vv 143 (165)
T PF04115_consen 74 LERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLDEPADFLVV 143 (165)
T ss_dssp EEE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESSSEEEEEEE
T ss_pred eccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccCCcceEEEE
Confidence 345777999999999988 5555543310 14467799999999999999999964333456666654
No 113
>PHA02984 hypothetical protein; Provisional
Probab=65.79 E-value=43 Score=29.83 Aligned_cols=51 Identities=14% Similarity=0.257 Sum_probs=38.5
Q ss_pred cEEEE--EEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEE
Q 048097 117 TEILV--VLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVA 172 (224)
Q Consensus 117 ~Ei~~--Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~ 172 (224)
.|.+| +++|+.++..... ++..+..+++||.|.+.-+.-|...- ++..+.+
T Consensus 92 nEy~FvlCl~G~~~I~~~~~----~~~is~~I~kGeaf~md~~t~h~i~T-~~knl~L 144 (286)
T PHA02984 92 NEYMFVLCLNGKTSIECFNK----GSKITNTIKKGEAFTLNLKTKYVTTT-KDKNLHL 144 (286)
T ss_pred ccEEEEEEcCCeEEEEEecC----CceeeeEEecCceEEEEccceEEEEe-CCCceEE
Confidence 45444 7899999987654 45568899999999999999999863 4444444
No 114
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.94 E-value=3 Score=35.88 Aligned_cols=42 Identities=26% Similarity=0.183 Sum_probs=35.7
Q ss_pred cccceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEE
Q 048097 91 NTLGTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFV 132 (224)
Q Consensus 91 ~~lgis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v 132 (224)
.+-++||....+.+++++|.|-||.-+-+.-++=|+..+.-.
T Consensus 71 EcD~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksy 112 (236)
T KOG4281|consen 71 ECDRFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSY 112 (236)
T ss_pred ecCceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeec
Confidence 344789999999999999999999888778888899988544
No 115
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=64.72 E-value=11 Score=34.42 Aligned_cols=46 Identities=20% Similarity=0.188 Sum_probs=31.5
Q ss_pred CeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEEeCCCCcee
Q 048097 139 NTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFAGFSSQFPGVI 184 (224)
Q Consensus 139 ~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~~~~s~~pg~~ 184 (224)
.+-+.-..++|+++++|.|..|-+.|...+-|+---.-+..|.+.+
T Consensus 260 ~kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~~V 305 (407)
T KOG2130|consen 260 YKPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFPFV 305 (407)
T ss_pred cCCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCcee
Confidence 3444567899999999999999999976554433322234555544
No 116
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=64.31 E-value=46 Score=27.29 Aligned_cols=65 Identities=17% Similarity=0.137 Sum_probs=47.1
Q ss_pred CCccCCCCcEEEEEEecEEEEEEEeCCCC--CCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEE
Q 048097 109 PPHTHPRATEILVVLEGTLYVGFVTSNQL--NNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAF 173 (224)
Q Consensus 109 ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~--~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l 173 (224)
..-.||..+|.++-+.|+-.+-++.+.+. -.++..+..++|+.+.+-+|.+|.-.-.=+.+..++
T Consensus 72 ~mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~~dF~ 138 (162)
T PRK03606 72 MLERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGEVSDFL 138 (162)
T ss_pred eEEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccccccCCCceEE
Confidence 34457889999999999988877765421 134667899999999999999997643333344454
No 117
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=63.43 E-value=6.2 Score=35.80 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.1
Q ss_pred EEEecCCCEEEEcCCCeeEEE
Q 048097 143 AKVLNKGDVFVFPIGLIHFQV 163 (224)
Q Consensus 143 ~~~l~~GDv~v~P~G~~H~~~ 163 (224)
...|+|||.+++|+|.+|...
T Consensus 159 ~v~lkpGe~~fl~Agt~HA~~ 179 (312)
T COG1482 159 RVKLKPGEAFFLPAGTPHAYL 179 (312)
T ss_pred EEecCCCCEEEecCCCceeec
Confidence 478999999999999999884
No 118
>PHA02890 hypothetical protein; Provisional
Probab=63.11 E-value=64 Score=28.60 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=36.4
Q ss_pred CcEEEE--EEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEe
Q 048097 116 ATEILV--VLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVN 164 (224)
Q Consensus 116 a~Ei~~--Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N 164 (224)
..|.+| +++|+.++..... ++..+..+++||.|.+.-+.-|.+.-
T Consensus 90 SnEy~FVlCL~Gs~~In~~~~----d~~iS~~I~kGeaF~mdv~t~H~i~T 136 (278)
T PHA02890 90 KIECFFVACIEGSCKINVNIG----DREISDHIHENQGFIMDVGLDHAIDS 136 (278)
T ss_pred eccEEEEEEeCCeEEEEEecC----CceeeeeeecCceEEEEccceEEEEc
Confidence 345555 7899999987643 56678899999999999999999975
No 119
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=62.46 E-value=32 Score=30.18 Aligned_cols=86 Identities=17% Similarity=0.167 Sum_probs=56.1
Q ss_pred ccccceEEEEEEEcCCCc---CCCccCCCCcEEEEEE---ecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEE
Q 048097 90 LNTLGTSAVRIDYAPYGQ---NPPHTHPRATEILVVL---EGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQV 163 (224)
Q Consensus 90 L~~lgis~~~v~l~pgg~---~ppH~Hp~a~Ei~~Vl---~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~ 163 (224)
+++-.+++....++||.+ .|.|.|.|..|..+.. +-+-.+.+..+. .+....+++--+.++-|+-.+|.-
T Consensus 172 ~~scQL~mG~T~L~pgsvWNTMP~H~HdRRmE~YlYF~m~e~srVfH~MGqP---~ETRHiv~~NEqAViSP~WSIHSG- 247 (278)
T COG3717 172 LESCQLSMGLTMLAPGSVWNTMPCHVHDRRMEVYLYFDMDEDSRVFHMMGQP---QETRHIVMHNEQAVISPPWSIHSG- 247 (278)
T ss_pred hhhhhhhhcceeecCCCccccCCccccccceeEEEEecCCCcceEEEecCCC---CceeEEEEeccceeeCCCceeecC-
Confidence 334456778888999986 5999999988876532 112222333322 233345677788888899999976
Q ss_pred eCCCCcEEEEEEEeCCC
Q 048097 164 NIGKTSAVAFAGFSSQF 180 (224)
Q Consensus 164 N~G~~~a~~l~~~~s~~ 180 (224)
.|...-.|+++...+|
T Consensus 248 -~GT~~YtFIWaMaGeN 263 (278)
T COG3717 248 -VGTANYTFIWAMAGEN 263 (278)
T ss_pred -ccccceEEEEEecccc
Confidence 4555667777765444
No 120
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=62.07 E-value=48 Score=29.61 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=36.1
Q ss_pred CCcEE-EEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEe--CCCCcEEEE
Q 048097 115 RATEI-LVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVN--IGKTSAVAF 173 (224)
Q Consensus 115 ~a~Ei-~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N--~G~~~a~~l 173 (224)
...|+ ++.+.|++++.+. ++ ++.+.+.|.+++|+|..-.... ....|+.+.
T Consensus 72 ~rrE~giV~lgG~~~V~vd------G~--~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~ 125 (276)
T PRK00924 72 ERRELGIINIGGAGTVTVD------GE--TYELGHRDALYVGKGAKEVVFASADAANPAKFY 125 (276)
T ss_pred CCcEEEEEEccceEEEEEC------CE--EEecCCCcEEEECCCCcEEEEEecCCCCCcEEE
Confidence 34564 5578899999853 33 3669999999999998877664 224566665
No 121
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=61.61 E-value=8.5 Score=35.89 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=19.4
Q ss_pred EEEEecCCCEEEEcCCCeeEEE
Q 048097 142 IAKVLNKGDVFVFPIGLIHFQV 163 (224)
Q Consensus 142 ~~~~l~~GDv~v~P~G~~H~~~ 163 (224)
....|++||++++|+|.+|...
T Consensus 237 N~v~l~pGeaifipAg~~HAyl 258 (389)
T PRK15131 237 NVVKLNPGEAMFLFAETPHAYL 258 (389)
T ss_pred eEEEeCCCCEEEeCCCCCeEEc
Confidence 3468999999999999999984
No 122
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=59.90 E-value=38 Score=26.93 Aligned_cols=57 Identities=16% Similarity=0.086 Sum_probs=39.0
Q ss_pred EEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcC
Q 048097 97 AVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPI 156 (224)
Q Consensus 97 ~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~ 156 (224)
.....+++|..+-..--+ +.-+.+|++|.+.+....+++ .+.....+.+||++-...
T Consensus 23 ~~~~~~~~g~~l~~~g~~-~~~~y~v~~G~v~~~~~~~~G--~~~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 23 LEVRKLPKGEVLFTEGEE-ADSLYIILSGIVKLYANTEDG--REIILGFLGPGDFFGELA 79 (214)
T ss_pred ceeEeeCCCCEEEcCCCc-CceEEEEEEeEEEEEEECCCC--cEEEEEEecCCchhhhHH
Confidence 344566666554433333 455889999999999887762 444456789999997664
No 123
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=59.28 E-value=36 Score=29.97 Aligned_cols=78 Identities=15% Similarity=-0.019 Sum_probs=46.6
Q ss_pred EEEccccccCcccccceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCC--------C
Q 048097 79 VTNANVEQIPGLNTLGTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKG--------D 150 (224)
Q Consensus 79 v~~~~~~~~p~L~~lgis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~G--------D 150 (224)
++.++.+.- +.. -+.+..++|++|.....-.. +.+-.++.|+|++++...+. + ...+..- |
T Consensus 14 ~~~i~~~~~-g~~--~~~~~~l~L~~g~~~~~~~~-~~E~~vv~l~G~~~v~~~g~-----~--~~~l~~R~~vF~~~~d 82 (261)
T PF04962_consen 14 VYSITPENA-GWM--YMGFGVLRLEAGESLEFELE-RRELGVVNLGGKATVTVDGE-----E--FYELGGRESVFDGPPD 82 (261)
T ss_dssp EEECTCCCC-CCC--CBECCCEEEECCHCCCCCCC-SEEEEEEEESSSEEEEETTE-----E--EEEE-TTSSGGGS--E
T ss_pred EEEECCCcc-Ccc--ccceEEEEecCCCEEeccCC-CcEEEEEEeCCEEEEEeCCc-----e--EEEecccccccCCCCc
Confidence 444544443 333 24455688888887655533 23445567899999987321 2 3556655 9
Q ss_pred EEEEcCCCeeEEEeCCC
Q 048097 151 VFVFPIGLIHFQVNIGK 167 (224)
Q Consensus 151 v~v~P~G~~H~~~N~G~ 167 (224)
++++|+|.---+...++
T Consensus 83 ~lYvp~g~~~~i~a~~~ 99 (261)
T PF04962_consen 83 ALYVPRGTKVVIFASTD 99 (261)
T ss_dssp EEEE-TT--EEEEESST
T ss_pred EEEeCCCCeEEEEEcCC
Confidence 99999999988877544
No 124
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=58.68 E-value=35 Score=30.43 Aligned_cols=46 Identities=2% Similarity=-0.049 Sum_probs=36.4
Q ss_pred cEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCc
Q 048097 117 TEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTS 169 (224)
Q Consensus 117 ~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~ 169 (224)
.=++++.+|...+.-.+ +. +..+.++.++++|++..|.+.|...+.
T Consensus 39 ~~li~v~~G~~~i~~~~-----g~--~l~i~~p~~~~~p~~~~~~~~~~~~~~ 84 (291)
T PRK15186 39 SVLIKLTTGKISITTSS-----GE--YITASGPMLIFLAKDQTIHITMEETHE 84 (291)
T ss_pred eEEEEeccceEEEEeCC-----Cc--eEEeCCCeEEEEeCCcEEEEEecccCC
Confidence 46889999999886422 22 368999999999999999998876543
No 125
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=57.47 E-value=54 Score=28.23 Aligned_cols=93 Identities=19% Similarity=0.276 Sum_probs=56.9
Q ss_pred CCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEEe-CCCCc
Q 048097 104 PYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFAGFS-SQFPG 182 (224)
Q Consensus 104 pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~~~~-s~~pg 182 (224)
-.|....|| ++...+|++|+.+.... ++....+.++||....|+|......-..+ ..++. +. .--|.
T Consensus 110 TeGhsGrh~---ad~y~tIL~G~~~~~~~------g~~~~evy~pGd~~~l~rg~a~~y~m~~~--tw~LE-Y~RG~IP~ 177 (216)
T PF04622_consen 110 TEGHSGRHW---ADDYFTILSGEQWAWSP------GSLEPEVYKPGDSHHLPRGEAKQYQMPPG--TWALE-YGRGWIPS 177 (216)
T ss_pred CCCCCcceE---eeeEEEEEEEEEEEEcC------CCCCceEeccCCEEEecCceEEEEEeCCC--eEEEE-ecCCchhh
Confidence 345556665 57889999999877543 23335789999999999999887765432 22322 21 11122
Q ss_pred e--eechhhhhcCCCCCCHHHHHhhcCCCHH
Q 048097 183 V--ITIADTVFGANPPINPDFLGKAFQLDPK 211 (224)
Q Consensus 183 ~--~~~~~~lf~~~p~~p~~vLa~af~~~~~ 211 (224)
. +.+++.+|.+ ++-..+-++..+...
T Consensus 178 ~lpf~~~dt~~sT---lDf~t~~~T~~~~~~ 205 (216)
T PF04622_consen 178 MLPFGFADTLFST---LDFPTLYRTVYITAR 205 (216)
T ss_pred hhHHHHHHHHHhc---cchHHHHHHHHHHHH
Confidence 1 2334666664 666666666555443
No 126
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=57.08 E-value=46 Score=27.74 Aligned_cols=52 Identities=13% Similarity=0.052 Sum_probs=35.0
Q ss_pred EEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEE
Q 048097 100 IDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 154 (224)
Q Consensus 100 v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~ 154 (224)
..+++|..+-.- -.....+.+|++|.+.+...++++ ++.....+.+||++-.
T Consensus 40 ~~~~kge~l~~~-Gd~~~~ly~v~~G~v~~~~~~~~G--~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 40 KPIQKGQTLFKA-GDELKSLYAIRSGTIKSYTITEQG--DEQITGFHLAGDLVGF 91 (235)
T ss_pred eeecCCCEeECC-CCCcceEEEEeeceEEEEEECCCC--CEEEEEeccCCceecc
Confidence 356776644222 222578999999999998877663 4444456689999854
No 127
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=57.08 E-value=35 Score=27.27 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=28.2
Q ss_pred CcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEE
Q 048097 116 ATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 154 (224)
Q Consensus 116 a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~ 154 (224)
...+.+|++|.+.+...++++ .+..-..+.+||++-.
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G--~e~~l~~~~~g~~~G~ 47 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESG--EEITVALLRENSVFGV 47 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCC--cEeeeEEccCCCEeee
Confidence 567899999999998877662 4444567899998743
No 128
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=56.69 E-value=40 Score=27.03 Aligned_cols=54 Identities=13% Similarity=0.109 Sum_probs=39.6
Q ss_pred CCccCCCCcEEEEEEecEEEEEEEeCCC---------C-------CCeeEEEEecCCCEEEEcCCCeeEEE
Q 048097 109 PPHTHPRATEILVVLEGTLYVGFVTSNQ---------L-------NNTLIAKVLNKGDVFVFPIGLIHFQV 163 (224)
Q Consensus 109 ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~---------~-------~~k~~~~~l~~GDv~v~P~G~~H~~~ 163 (224)
.+=.|.+--.+.|+++|+=.+++..... + +.. ....|++|+..+|.++..|...
T Consensus 58 ~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~-~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 58 LFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCG-ETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cccccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCC-cEEEeCCCeEEEECCcccccCC
Confidence 4456778889999999998888754220 0 111 1468899999999999999864
No 129
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=54.49 E-value=51 Score=26.89 Aligned_cols=61 Identities=16% Similarity=0.082 Sum_probs=43.4
Q ss_pred cCCCccCCCCcEEEEEEecEEEEEEEeCCC-----------------CCCeeEEEEecCCCEEEEcCCCeeEEEeCCC
Q 048097 107 QNPPHTHPRATEILVVLEGTLYVGFVTSNQ-----------------LNNTLIAKVLNKGDVFVFPIGLIHFQVNIGK 167 (224)
Q Consensus 107 ~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~-----------------~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~ 167 (224)
..-+-+|.+--++-++++|+=.+++....+ ........+|.+|+..+|=+|.+|.-.....
T Consensus 60 ~~~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiFfP~e~H~P~c~~~ 137 (154)
T COG2731 60 EKKFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIFFPGEPHRPGCNVG 137 (154)
T ss_pred hcchhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEECCCCccccccccC
Confidence 445556777899999999998887764331 0101224689999999999999998765544
No 130
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=53.76 E-value=83 Score=24.79 Aligned_cols=56 Identities=21% Similarity=0.188 Sum_probs=35.4
Q ss_pred cCCCccCCCCcEEEEEEecEEEEEEEeCCC----------C--------CCeeEEEEecCCCEEEEcCCCeeEE
Q 048097 107 QNPPHTHPRATEILVVLEGTLYVGFVTSNQ----------L--------NNTLIAKVLNKGDVFVFPIGLIHFQ 162 (224)
Q Consensus 107 ~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~----------~--------~~k~~~~~l~~GDv~v~P~G~~H~~ 162 (224)
-..+=.|.+--.+-|+++|+=++++..... . +.......|++|+..+|-++-+|.-
T Consensus 60 ~~~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~~y~~~~D~~f~~~~~~~~~i~l~~G~faiffP~D~H~P 133 (142)
T TIGR00022 60 SKKAELHHRYLDIQLLLRGEENIEVGTTPPNLSVYEDYLEEDDIQLCADIDDEQTVILKPGMFAVFYPGEPHKP 133 (142)
T ss_pred hcchhhhhheEEEEEeecceEEEEEecCccccccccCCCcCCCEEeccCCCCceEEEeCCCcEEEECCCCcccc
Confidence 345556777889999999998888853210 0 0111234667777777777777754
No 131
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=53.65 E-value=44 Score=26.61 Aligned_cols=69 Identities=20% Similarity=0.156 Sum_probs=36.5
Q ss_pred eEEEEEEEcCCC--cCCCccCCCCcEEEEEEecEEEEEEE-eCCC-----------------CCCeeEEEEecCCCEEEE
Q 048097 95 TSAVRIDYAPYG--QNPPHTHPRATEILVVLEGTLYVGFV-TSNQ-----------------LNNTLIAKVLNKGDVFVF 154 (224)
Q Consensus 95 is~~~v~l~pgg--~~ppH~Hp~a~Ei~~Vl~G~~~v~~v-~~~~-----------------~~~k~~~~~l~~GDv~v~ 154 (224)
+.+...+..... -..+=.|.+--.+-|+++|+=++++. .... .+.......|++|+.++|
T Consensus 46 ~~~~v~~~~t~~~~~~~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~if 125 (153)
T PF04074_consen 46 LFANVQEYETKPEEERRFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAIF 125 (153)
T ss_dssp -EEEEE--B-B-GGGS-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEEE
T ss_pred EEEEeeccccccccccceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEEE
Confidence 444444443332 34556788888999999999988883 2210 011112357999999999
Q ss_pred cCCCeeEEE
Q 048097 155 PIGLIHFQV 163 (224)
Q Consensus 155 P~G~~H~~~ 163 (224)
-++.+|.-.
T Consensus 126 fP~d~H~p~ 134 (153)
T PF04074_consen 126 FPEDAHRPG 134 (153)
T ss_dssp -TT--EEEE
T ss_pred CCCcccccc
Confidence 999999954
No 132
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=52.17 E-value=33 Score=24.62 Aligned_cols=64 Identities=20% Similarity=0.273 Sum_probs=37.1
Q ss_pred EEEcCCCcCCCccCC---CCcEEEEE--Ee-c-----EEEEEEEeC--CCCCCeeEEEE-----ecCCCEEEEcC-CCee
Q 048097 100 IDYAPYGQNPPHTHP---RATEILVV--LE-G-----TLYVGFVTS--NQLNNTLIAKV-----LNKGDVFVFPI-GLIH 160 (224)
Q Consensus 100 v~l~pgg~~ppH~Hp---~a~Ei~~V--l~-G-----~~~v~~v~~--~~~~~k~~~~~-----l~~GDv~v~P~-G~~H 160 (224)
..+.+|+...||+.. ....+.++ +. - -+...+... .. ....... .++|++++|+. ...|
T Consensus 4 ~~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~--~~~~~~~~~~~~p~~g~~v~F~~~~~~H 81 (100)
T PF13640_consen 4 NRYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSD--DVSREVEDFDIVPKPGRLVIFPSDNSLH 81 (100)
T ss_dssp EEEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TS--STCEEEGGGSEE-BTTEEEEEESCTCEE
T ss_pred EEECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCC--CcceEEEeccccCCCCEEEEEeCCCCee
Confidence 456889999999876 33343333 33 1 133333321 10 1111222 88999999999 9999
Q ss_pred EEEeC
Q 048097 161 FQVNI 165 (224)
Q Consensus 161 ~~~N~ 165 (224)
...-.
T Consensus 82 ~v~~v 86 (100)
T PF13640_consen 82 GVTPV 86 (100)
T ss_dssp EEEEE
T ss_pred cCccc
Confidence 98766
No 133
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=50.07 E-value=1.8e+02 Score=26.65 Aligned_cols=62 Identities=13% Similarity=0.213 Sum_probs=45.8
Q ss_pred CCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEEe
Q 048097 108 NPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFAGFS 177 (224)
Q Consensus 108 ~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~~~~ 177 (224)
...-+..+.+-+++-.+|.+.+.- +- +| ..++++++.+||+|.-..+--.|...-.++.++.
T Consensus 147 ~safyNsDGDFLiVPQ~G~L~I~T--Ef---Gr---llV~P~EI~VIpqG~RFsi~v~~~sRGYilEvYg 208 (446)
T KOG1417|consen 147 NSAFYNSDGDFLIVPQQGRLWITT--EF---GR---LLVTPNEIAVIPQGIRFSIDVPGPSRGYILEVYG 208 (446)
T ss_pred cceeecCCCCEEEecccCcEEEEe--ec---cc---eeecccceEEeecccEEEEecCCCCcceEEEEec
Confidence 455667777777777778776653 22 44 6789999999999999888777777777776665
No 134
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=46.61 E-value=1.8e+02 Score=25.61 Aligned_cols=86 Identities=15% Similarity=0.092 Sum_probs=54.1
Q ss_pred EEEccccccCcccccceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCC-C-CCCeeEEEEecCCCEEEEcC
Q 048097 79 VTNANVEQIPGLNTLGTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSN-Q-LNNTLIAKVLNKGDVFVFPI 156 (224)
Q Consensus 79 v~~~~~~~~p~L~~lgis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~-~-~~~k~~~~~l~~GDv~v~P~ 156 (224)
+..++.++ +++.- +.+...+|++|.....-.-. -+-++++++|++++.-.+.. + -|.|.--++=++=|++++|.
T Consensus 16 v~~vtp~s-agw~Y--VGF~~~~L~~Ges~~~~~~~-~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~ 91 (270)
T COG3718 16 VQDVTPES-AGWEY--VGFRLLRLAAGESATEETGD-RERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPA 91 (270)
T ss_pred eEEecCCC-CCcee--EEEEEEEccCCCcccccCCC-ceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecC
Confidence 55454332 34432 45556778999887766654 35667789999999754332 0 02332223446779999999
Q ss_pred CCeeEEEeCCCC
Q 048097 157 GLIHFQVNIGKT 168 (224)
Q Consensus 157 G~~H~~~N~G~~ 168 (224)
|..-.+...++-
T Consensus 92 g~~~~vtA~t~~ 103 (270)
T COG3718 92 GSAFSVTATTDL 103 (270)
T ss_pred CceEEEEeecce
Confidence 999888765543
No 135
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=43.96 E-value=1.4e+02 Score=24.68 Aligned_cols=67 Identities=12% Similarity=0.087 Sum_probs=47.7
Q ss_pred CCccCCCCcEEEEEEec-EEEEEEEeCCC--CCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEE
Q 048097 109 PPHTHPRATEILVVLEG-TLYVGFVTSNQ--LNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFAG 175 (224)
Q Consensus 109 ppH~Hp~a~Ei~~Vl~G-~~~v~~v~~~~--~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~~ 175 (224)
..-.||..++-+.-+.| ..++-++.+.+ .-+.+..+....|+.+.+-+|.+|...-.=+.+..++.+
T Consensus 72 ~mERHp~~sQafiPl~~~~~~lvVvap~~~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~~~dF~vv 141 (171)
T PRK13395 72 MMERHPLGSQAFIPLAAVSRYAVVVAPAGEFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDAVSDFVVV 141 (171)
T ss_pred eEEECCCceEEEEECCCCCCEEEEEccCCCCCCCceEEEEecCCcEEEeCCCcccccccccCCCccEEEE
Confidence 33457888999999999 77776665431 113467789999999999999999975444445555544
No 136
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=43.35 E-value=26 Score=28.02 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=22.8
Q ss_pred CCCCHHHHHhhcCCCHHHHHHhhhh
Q 048097 195 PPINPDFLGKAFQLDPKIVKDLQDK 219 (224)
Q Consensus 195 p~~p~~vLa~af~~~~~~v~~l~~~ 219 (224)
|.++++-+|++|+++++.+++|++.
T Consensus 88 ~~~~~~eLA~Sf~is~el~~qL~~~ 112 (137)
T PRK14585 88 YQYTPQEYAESLAIPDELYQQLQKS 112 (137)
T ss_pred CCCChHHHHHHcCCCHHHHHHHhcC
Confidence 4699999999999999999999875
No 137
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=42.77 E-value=1.1e+02 Score=21.17 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=34.8
Q ss_pred EecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEEe
Q 048097 123 LEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFAGFS 177 (224)
Q Consensus 123 l~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~~~~ 177 (224)
..|...+.+.+.++ ..+++..+++||..-++.+..- ....|+-.++-+ .++
T Consensus 5 a~~~sWv~V~d~dG--~~~~~~~l~~G~~~~~~~~~~~-~i~iGna~~v~v-~~n 55 (77)
T PF13464_consen 5 ATGDSWVEVTDADG--KVLFSGTLKAGETKTFEGKEPF-RIRIGNAGAVEV-TVN 55 (77)
T ss_pred EeCCeEEEEEeCCC--cEeeeeeeCCCcEEEEeCCCCE-EEEEeCCCcEEE-EEC
Confidence 45777777776553 6788999999999999544443 345677666554 344
No 138
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=42.65 E-value=28 Score=32.44 Aligned_cols=72 Identities=22% Similarity=0.261 Sum_probs=48.3
Q ss_pred eEEEEE-EEcC-CCcCCCc---cCCCCcEEEEEEecEEEEEEEeCCCC----------------------CCeeEEEEec
Q 048097 95 TSAVRI-DYAP-YGQNPPH---THPRATEILVVLEGTLYVGFVTSNQL----------------------NNTLIAKVLN 147 (224)
Q Consensus 95 is~~~v-~l~p-gg~~ppH---~Hp~a~Ei~~Vl~G~~~v~~v~~~~~----------------------~~k~~~~~l~ 147 (224)
..-+|. .+.| |.-.|.| +|. .-+...+-|+=+--+..+..+ ..+..+..=+
T Consensus 196 ~ddyrFvy~Gp~gSwtp~HaDVf~s--~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qe 273 (427)
T KOG2131|consen 196 SDDYRFVYAGPAGSWTPFHADVFHS--PSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQE 273 (427)
T ss_pred CCceeEEEeccCCCCCccchhhhcC--CcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhcc
Confidence 344454 3443 4467889 773 567778888877766655410 0112223348
Q ss_pred CCCEEEEcCCCeeEEEeCCCC
Q 048097 148 KGDVFVFPIGLIHFQVNIGKT 168 (224)
Q Consensus 148 ~GDv~v~P~G~~H~~~N~G~~ 168 (224)
+|+++++|.|..|...|.|++
T Consensus 274 pge~VFvPsGW~hQV~NL~dT 294 (427)
T KOG2131|consen 274 PGETVFVPSGWHHQVLNLGDT 294 (427)
T ss_pred CCceeeccCccccccccccce
Confidence 999999999999999999986
No 139
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=42.62 E-value=55 Score=27.30 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=35.0
Q ss_pred EEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEE
Q 048097 99 RIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 154 (224)
Q Consensus 99 ~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~ 154 (224)
...+++|..+- +-......+.+|++|.+.+.....+ ++..-..+.+||++-.
T Consensus 32 ~~~~~~ge~l~-~~g~~~~~~~~v~~G~v~~~~~~~~---~~~~i~~~~~g~~~g~ 83 (236)
T PRK09392 32 LQRFPPGTMLI-TEGEPADFLFVVLDGLVELSASSQD---RETTLAILRPVSTFIL 83 (236)
T ss_pred eeecCCCCEEE-eCCCccceEEEEEeCEEEEEEcCCC---ceEEEEEeCCCchhhh
Confidence 45677776543 3344467999999999999765432 4444567899998643
No 140
>PF13994 PgaD: PgaD-like protein
Probab=41.61 E-value=31 Score=27.24 Aligned_cols=24 Identities=25% Similarity=0.634 Sum_probs=22.0
Q ss_pred CCCHHHHHhhcCCCHHHHHHhhhh
Q 048097 196 PINPDFLGKAFQLDPKIVKDLQDK 219 (224)
Q Consensus 196 ~~p~~vLa~af~~~~~~v~~l~~~ 219 (224)
+++++-+|+.|++++++++++++.
T Consensus 100 ~~~~~elA~~f~l~~~~l~~lr~~ 123 (138)
T PF13994_consen 100 PVSDEELARSFGLSPEQLQQLRQA 123 (138)
T ss_pred CCCHHHHHHHcCCCHHHHHHHHhC
Confidence 389999999999999999999875
No 141
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=40.02 E-value=1.2e+02 Score=24.11 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=44.2
Q ss_pred cCcccccceEEEEEEEcCCCcCCCccCCCCcEEEEEEe----cEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEE
Q 048097 87 IPGLNTLGTSAVRIDYAPYGQNPPHTHPRATEILVVLE----GTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQ 162 (224)
Q Consensus 87 ~p~L~~lgis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~----G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~ 162 (224)
-|+++ ++...++.+++|.....- +..|+..++- |++.+.+-++. + ..++|||++-+-.|..-.+
T Consensus 11 ~P~~k--N~~v~fIvl~~g~~tkTk---dg~~v~~~kVaD~TgsI~isvW~e~---~----~~~~PGDIirLt~Gy~Si~ 78 (134)
T KOG3416|consen 11 KPGLK--NINVTFIVLEYGRATKTK---DGHEVRSCKVADETGSINISVWDEE---G----CLIQPGDIIRLTGGYASIF 78 (134)
T ss_pred Chhhh--cceEEEEEEeeceeeecc---CCCEEEEEEEecccceEEEEEecCc---C----cccCCccEEEecccchhhh
Confidence 36666 566677777777654433 3457666653 56666666543 2 4689999999999988777
Q ss_pred Ee
Q 048097 163 VN 164 (224)
Q Consensus 163 ~N 164 (224)
++
T Consensus 79 qg 80 (134)
T KOG3416|consen 79 QG 80 (134)
T ss_pred cC
Confidence 65
No 142
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=39.45 E-value=35 Score=27.86 Aligned_cols=25 Identities=28% Similarity=0.655 Sum_probs=22.8
Q ss_pred CCCCHHHHHhhcCCCHHHHHHhhhh
Q 048097 195 PPINPDFLGKAFQLDPKIVKDLQDK 219 (224)
Q Consensus 195 p~~p~~vLa~af~~~~~~v~~l~~~ 219 (224)
|.++++-+|+.|+++++.++++++.
T Consensus 97 ~~l~~dElA~sF~l~~e~i~qLr~~ 121 (153)
T PRK14584 97 PDLDDDELASSFALSPELIAQLKSG 121 (153)
T ss_pred CCCChHHHHHHcCCCHHHHHHHHhC
Confidence 4699999999999999999999875
No 143
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=38.23 E-value=32 Score=26.77 Aligned_cols=26 Identities=8% Similarity=0.204 Sum_probs=20.8
Q ss_pred CCCHHHHHhhcCCCHHHHHHhhhhhc
Q 048097 196 PINPDFLGKAFQLDPKIVKDLQDKFI 221 (224)
Q Consensus 196 ~~p~~vLa~af~~~~~~v~~l~~~~~ 221 (224)
|+++..+|+..++++++|+++++..+
T Consensus 72 GFsD~~IA~l~~~~e~~vr~~R~~~~ 97 (123)
T PF02787_consen 72 GFSDRQIARLWGVSEEEVRELRKEHG 97 (123)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHHHHT
T ss_pred CCCHHHHHhccCCCHHHHHHHHHHcC
Confidence 59999999999999999999998754
No 144
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=37.30 E-value=34 Score=23.17 Aligned_cols=24 Identities=13% Similarity=0.367 Sum_probs=17.8
Q ss_pred CCHHHHHhhcCCCHHHHHHhhhhh
Q 048097 197 INPDFLGKAFQLDPKIVKDLQDKF 220 (224)
Q Consensus 197 ~p~~vLa~af~~~~~~v~~l~~~~ 220 (224)
=.+.-|.+.+|++++++++||+++
T Consensus 44 s~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 44 SVENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp SHHHHHHHT-T--HHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHc
Confidence 456788899999999999999875
No 145
>PF10365 DUF2436: Domain of unknown function (DUF2436); InterPro: IPR018832 Gingipains R and K are endopeptidases with specificity for arginyl and lysyl bonds, respectively. Like other cysteine peptidases, they require reducing conditions for activity. They are maximally active at approximately neutral pH. Gingipains R and K are secreted by the bacterium Porphyromonas gingivalis (Bacteroides gingivalis). The bacterium is a major pathogen in periodontal disease, and the many ways in which the activities of the gingipains may contribute to the disease processes have been reviewed []. These enzymes are also involved in the hemagglutinating activity of the organisms. This entry represents a central region found in gingipain K peptidases, active on lysyl bonds; they belong to the MEROPS peptidase family C25 (gingipain family, clan CD).
Probab=35.71 E-value=49 Score=26.77 Aligned_cols=38 Identities=16% Similarity=0.406 Sum_probs=25.7
Q ss_pred CCCCcceEeeccCCCCcceecCcccCCCCCCCCCCeeeec
Q 048097 25 PSPLQDICVAIIDHKDGVFVNGKFCKDPKLAKAEDFFLSG 64 (224)
Q Consensus 25 ~~~~~dfcv~~~~~~~~~~~~g~~ck~p~~~~~~df~f~~ 64 (224)
|.-..|||++.|.....+.+-|.--.. ....+||+|..
T Consensus 105 PaG~YDy~I~~P~~~~kiwIaGd~g~~--~tr~dDy~fEA 142 (161)
T PF10365_consen 105 PAGTYDYCIAAPQPGGKIWIAGDGGDG--PTRGDDYVFEA 142 (161)
T ss_pred cCceeEEEEecCCCCCeEEEecCCCCC--CccccceEEec
Confidence 566789999966555567777753222 23579999973
No 146
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=34.37 E-value=90 Score=31.78 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=34.1
Q ss_pred EEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEE
Q 048097 96 SAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF 152 (224)
Q Consensus 96 s~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~ 152 (224)
.+....+.||..+-.-=. .++++.+|++|++.+... ..+ ++..-..+++||+|
T Consensus 396 ~~~~~~~~pge~I~~qge-~~~~lY~I~~G~V~i~~~-~~~--~e~~l~~l~~Gd~F 448 (823)
T PLN03192 396 KMKAEYIPPREDVIMQNE-APDDVYIVVSGEVEIIDS-EGE--KERVVGTLGCGDIF 448 (823)
T ss_pred hhheeeeCCCCEEEECCC-CCceEEEEEecEEEEEEe-cCC--cceeeEEccCCCEe
Confidence 344456778875432222 357899999999988532 221 33344679999988
No 147
>COG1741 Pirin-related protein [General function prediction only]
Probab=34.37 E-value=3.4e+02 Score=24.19 Aligned_cols=43 Identities=21% Similarity=0.128 Sum_probs=30.7
Q ss_pred ccCcccccceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEE
Q 048097 86 QIPGLNTLGTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVG 130 (224)
Q Consensus 86 ~~p~L~~lgis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~ 130 (224)
..|.-... +.+..+.+++|+..+.+ =+.-.-++||++|++.+.
T Consensus 165 ~~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v~ 207 (276)
T COG1741 165 SSPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEVN 207 (276)
T ss_pred ccccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEEc
Confidence 44544444 77888899999987776 222357899999988773
No 148
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=33.53 E-value=1.9e+02 Score=22.94 Aligned_cols=70 Identities=19% Similarity=0.138 Sum_probs=45.5
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEe---CCCCcE
Q 048097 94 GTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVN---IGKTSA 170 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N---~G~~~a 170 (224)
|+++.|.+-.- ... +... ..=+.+|++|+=++.+.+ + .+.+.+|+.++.+..++-...- ..++|.
T Consensus 5 gl~i~r~~~~~-~~~-~~~y--~p~i~~vlQG~K~~~~g~------~--~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~ 72 (155)
T PF06719_consen 5 GLSIFRSSRPT-PPM-PCVY--EPSICIVLQGSKRVHLGD------Q--VFEYDAGQYLVSSVDLPVESEVVEASPEEPY 72 (155)
T ss_pred CEEEEEECCCC-CCc-ceec--CCeEEEEEeeeEEEEECC------c--eEEecCCcEEEecCCCcEEEEEeeccCCCCE
Confidence 45666644332 222 2222 256899999999888752 2 4889999999999998876644 335565
Q ss_pred EEEEE
Q 048097 171 VAFAG 175 (224)
Q Consensus 171 ~~l~~ 175 (224)
..+..
T Consensus 73 l~l~l 77 (155)
T PF06719_consen 73 LALSL 77 (155)
T ss_pred EEEEE
Confidence 55543
No 149
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=32.34 E-value=1e+02 Score=20.73 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=22.2
Q ss_pred EEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCC
Q 048097 128 YVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIG 166 (224)
Q Consensus 128 ~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G 166 (224)
+|.+-++. +|.++.+|++|..|.--+|.++.-.-.|
T Consensus 11 rVQlTD~K---gr~~Ti~L~~G~~fhThrG~i~HDdlIG 46 (54)
T PF14801_consen 11 RVQLTDPK---GRKHTITLEPGGEFHTHRGAIRHDDLIG 46 (54)
T ss_dssp EEEEEETT-----EEEEE--TT-EEEETTEEEEHHHHTT
T ss_pred EEEEccCC---CCeeeEEECCCCeEEcCccccchhheec
Confidence 35566766 7888999999999998888776543334
No 150
>PLN02288 mannose-6-phosphate isomerase
Probab=32.32 E-value=34 Score=32.02 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=18.6
Q ss_pred EEecCCCEEEEcCCCeeEEE
Q 048097 144 KVLNKGDVFVFPIGLIHFQV 163 (224)
Q Consensus 144 ~~l~~GDv~v~P~G~~H~~~ 163 (224)
..|++||.+++|+|.+|...
T Consensus 253 v~L~PGeaifl~ag~~HAYl 272 (394)
T PLN02288 253 VKLNPGEALYLGANEPHAYL 272 (394)
T ss_pred EecCCCCEEEecCCCCceec
Confidence 68999999999999999874
No 151
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=30.84 E-value=47 Score=23.30 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=13.5
Q ss_pred CchhHHHHHHHHHHHHhhhhhccCCC
Q 048097 1 MKAIQFLIGFALFALASSLASAYDPS 26 (224)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~d~~ 26 (224)
|..+++.+|++|+++ -++|.-||++
T Consensus 1 mnn~Si~VLlaLvLI-g~fAVqSdag 25 (71)
T PF04202_consen 1 MNNLSIAVLLALVLI-GSFAVQSDAG 25 (71)
T ss_pred CCchhHHHHHHHHHH-hhheeeecCc
Confidence 555555554444433 3555667775
No 152
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=30.49 E-value=1.5e+02 Score=27.36 Aligned_cols=82 Identities=18% Similarity=0.163 Sum_probs=60.2
Q ss_pred CCCeeEEEccccccCcccccceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCe-eEEEEecCCCEE
Q 048097 74 RLGFNVTNANVEQIPGLNTLGTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNT-LIAKVLNKGDVF 152 (224)
Q Consensus 74 ~~g~~v~~~~~~~~p~L~~lgis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k-~~~~~l~~GDv~ 152 (224)
..|..|..++.+- ++.-+.+.|+.++..-++.-+..-+...+-.+++..-++.++.++ ++ +-...|++||-+
T Consensus 250 ~sG~eVlvVd~~G----~tR~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~d---G~~vsVt~Lk~GD~V 322 (344)
T PRK02290 250 RSGDEVLVVDADG----NTREAIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTPD---GKPVSVVDLKPGDEV 322 (344)
T ss_pred cCCCEEEEEeCCC----CEEEEEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECCC---CCEeeeeecCCCCEE
Confidence 4577777776432 233578889999998887666665788999999999999999887 44 334789999977
Q ss_pred E--EcCCCeeEE
Q 048097 153 V--FPIGLIHFQ 162 (224)
Q Consensus 153 v--~P~G~~H~~ 162 (224)
. ++.+-=||-
T Consensus 323 L~~~~~~~RHfG 334 (344)
T PRK02290 323 LGYLEEAARHFG 334 (344)
T ss_pred EEEecCCccccc
Confidence 4 455555654
No 153
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=29.91 E-value=94 Score=24.49 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=21.6
Q ss_pred eeEEEEecCCCEEEEcCCCeeEE-EeCCCCc
Q 048097 140 TLIAKVLNKGDVFVFPIGLIHFQ-VNIGKTS 169 (224)
Q Consensus 140 k~~~~~l~~GDv~v~P~G~~H~~-~N~G~~~ 169 (224)
......+++||++++..-++|.- .|.+..+
T Consensus 178 ~~~~~~~~~Gdvl~~~~~~~H~s~~N~s~~~ 208 (211)
T PF05721_consen 178 EWVPVPMKAGDVLFFHSRLIHGSGPNTSDDP 208 (211)
T ss_dssp GCEEE-BSTTEEEEEETTSEEEEE-B-SSST
T ss_pred ceEEeecCCCeEEEEcCCccccCCCCCCcCc
Confidence 34467899999999999999996 4555543
No 154
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=29.29 E-value=23 Score=32.51 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=58.4
Q ss_pred ccccccCcccccceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCC------------------------
Q 048097 82 ANVEQIPGLNTLGTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQL------------------------ 137 (224)
Q Consensus 82 ~~~~~~p~L~~lgis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~------------------------ 137 (224)
=+.-.+|+.+..++.+...-.+.|.+.|.|.-|. .-++.-+.|+.++.+.-+...
T Consensus 237 PDyc~~~~f~~~~v~~~~w~GpaGtV~pih~dp~-hNi~~qv~G~k~i~l~~p~~s~~lyP~d~~~~~tsqvdvenPdlk 315 (355)
T KOG2132|consen 237 PDYCSFPNFENEVVDINAWIGPAGTVLPIHMDPW-HNILSQVFGRKRIRLYPPEDSGALYPTDTYLLETSQVDVENPDLK 315 (355)
T ss_pred CceeecCCCCccccceeEEeccCCceeccccccc-cceeeeeecceEEEEecCcccCCCCCccchhhcccccccCCCChh
Confidence 3445667777666777777777799999997775 678888889988887643210
Q ss_pred ------CCeeEEEEecCCCEEEEcCCCeeEEEe
Q 048097 138 ------NNTLIAKVLNKGDVFVFPIGLIHFQVN 164 (224)
Q Consensus 138 ------~~k~~~~~l~~GDv~v~P~G~~H~~~N 164 (224)
..+.....|.+||++++|+-..|+..-
T Consensus 316 ~fp~~~k~~~l~~lL~pGe~L~iP~kwwhyvrs 348 (355)
T KOG2132|consen 316 AFPKFAKARFLDCLLEPGEALFIPPKWWHYVRS 348 (355)
T ss_pred hhhHHHHHHHHHHhcCCchhccccHHHhhhhhh
Confidence 111223468999999999999998753
No 155
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=28.46 E-value=1.1e+02 Score=29.67 Aligned_cols=32 Identities=34% Similarity=0.557 Sum_probs=24.8
Q ss_pred CcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEE
Q 048097 116 ATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF 152 (224)
Q Consensus 116 a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~ 152 (224)
+.|+++|.+|.+.+ ++++ +...-.+|++|++|
T Consensus 348 gkEMyIVk~G~L~V--v~dD---g~t~~~~L~~G~~F 379 (536)
T KOG0500|consen 348 GKEMYIVKEGKLAV--VADD---GVTVFVTLKAGSVF 379 (536)
T ss_pred cceEEEEEccEEEE--EecC---CcEEEEEecCCcee
Confidence 78999999999987 3444 44345789999987
No 156
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=26.96 E-value=1.8e+02 Score=26.92 Aligned_cols=83 Identities=17% Similarity=0.165 Sum_probs=60.3
Q ss_pred CCCeeEEEccccccCcccccceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCe-eEEEEecCCCEE
Q 048097 74 RLGFNVTNANVEQIPGLNTLGTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNT-LIAKVLNKGDVF 152 (224)
Q Consensus 74 ~~g~~v~~~~~~~~p~L~~lgis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k-~~~~~l~~GDv~ 152 (224)
..|..|..++.+- ++.-+.+.|+.++..-++.-+-..+..++..+++..-++.++.++ ++ +-...|++||-+
T Consensus 260 ~sG~~VlvVd~~G----~tR~~~VGRvKIE~RPLllIeA~~~g~~~svilQnaetIRlv~p~---G~~vsVt~Lk~GD~v 332 (354)
T PF01959_consen 260 RSGDEVLVVDADG----RTRTAIVGRVKIERRPLLLIEAEADGKRISVILQNAETIRLVGPD---GEPVSVTELKPGDEV 332 (354)
T ss_pred cCCCEEEEEeCCC----CEEEEEeeEEEEeecceEEEEEEeCCeEEEEEEecCcEEEEECCC---CCEeeeeecCCCCEE
Confidence 4577777776432 233578889999988877666555789999999999999999887 44 334789999977
Q ss_pred E--EcCCCeeEEE
Q 048097 153 V--FPIGLIHFQV 163 (224)
Q Consensus 153 v--~P~G~~H~~~ 163 (224)
. ++.+-=||-.
T Consensus 333 L~~~~~~~RHfG~ 345 (354)
T PF01959_consen 333 LVYLEEAGRHFGM 345 (354)
T ss_pred EEEecCCCcccce
Confidence 4 4555666543
No 157
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=26.78 E-value=69 Score=19.94 Aligned_cols=26 Identities=8% Similarity=0.038 Sum_probs=18.8
Q ss_pred CCCHHHHHhhcCCCHHHHHHhhhhhc
Q 048097 196 PINPDFLGKAFQLDPKIVKDLQDKFI 221 (224)
Q Consensus 196 ~~p~~vLa~af~~~~~~v~~l~~~~~ 221 (224)
+.+..-+++.++++..+|.+..++|.
T Consensus 17 G~s~~~ia~~lgvs~~Tv~~w~kr~~ 42 (50)
T PF13384_consen 17 GWSIREIAKRLGVSRSTVYRWIKRYR 42 (50)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHT---
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHcc
Confidence 48889999999999999999998875
No 158
>PHA00672 hypothetical protein
Probab=24.72 E-value=3.6e+02 Score=21.49 Aligned_cols=67 Identities=16% Similarity=-0.004 Sum_probs=50.3
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcE
Q 048097 94 GTSAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSA 170 (224)
Q Consensus 94 gis~~~v~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a 170 (224)
|+....+.++.|-++.=-.|. -|-+++.+|.+++.... . .+.|+.=.++.-|+|.-...+...+...
T Consensus 46 GvYARei~IPkGt~LtG~~hk--f~~~ii~sG~itV~tdg------e--~~rl~g~~~i~~~aG~KragyAHeDT~w 112 (152)
T PHA00672 46 GVYARTIRIPAGVALTGALIK--VSTVLIFSGHATVFIGG------E--AVELRGYHVIPASAGRKQAFVAHADTDL 112 (152)
T ss_pred ceeEEEEeccCceeeeeeeeE--eeEEEEecccEEEEeCC------c--EEEEecceeeecCCCcccceeeeccceE
Confidence 788888999999988777774 34459999999996542 2 3678888888888888777766555443
No 159
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=24.21 E-value=98 Score=27.07 Aligned_cols=38 Identities=21% Similarity=0.129 Sum_probs=28.3
Q ss_pred EEEecCCCEEEEcCCCeeEE-EeCCCCc-EEEEEEEeCCC
Q 048097 143 AKVLNKGDVFVFPIGLIHFQ-VNIGKTS-AVAFAGFSSQF 180 (224)
Q Consensus 143 ~~~l~~GDv~v~P~G~~H~~-~N~G~~~-a~~l~~~~s~~ 180 (224)
...+++||+++|-.-++|.- .|.++.+ ..++..|++.+
T Consensus 212 ~~~~~aGDvl~f~~~~~H~S~~N~s~~~R~~l~l~y~~~~ 251 (277)
T TIGR02408 212 TFTGKAGSAVWFDCNTMHGSGSNITPWPRSNVFMVFNSVE 251 (277)
T ss_pred eeccCCceEEEEccccccCCCCCCCCCcceeEEEEEecCC
Confidence 45689999999999999996 5666554 45555676543
No 160
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=24.06 E-value=1.3e+02 Score=30.49 Aligned_cols=48 Identities=19% Similarity=0.358 Sum_probs=32.2
Q ss_pred EEcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEE
Q 048097 101 DYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF 152 (224)
Q Consensus 101 ~l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~ 152 (224)
-+.||..+-..=.+ -+|+.+|++|.+.+.- .++ |+......|++||.+
T Consensus 446 ~f~pge~iireGd~-v~~myFI~rG~le~~~--~~~-g~~~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 446 YFTPGEYIIREGDP-VTDMYFIVRGSLESIT--TDG-GGFFVVAILGPGDFF 493 (727)
T ss_pred ccCCCCeEEecCCc-cceeEEEEeeeEEEEE--ccC-CceEEEEEecCCCcc
Confidence 34566655545455 5899999999997743 221 133446789999998
No 161
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=24.01 E-value=86 Score=32.07 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=28.9
Q ss_pred CeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEEeCC
Q 048097 139 NTLIAKVLNKGDVFVFPIGLIHFQVNIGKTSAVAFAGFSSQ 179 (224)
Q Consensus 139 ~k~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~l~~~~s~ 179 (224)
.+.+.-.|++|+.++||.|.+|..+-.-+.-+...-.+.++
T Consensus 193 dkC~~~~l~~g~T~~iPsGwIhAV~Tp~d~l~fgGnflhsl 233 (776)
T KOG1633|consen 193 DKCYKCILKQGQTLFIPSGWIHAVLTPTDCLVFGGNFLHSL 233 (776)
T ss_pred ceeEEEEeccCceEecccceeEeeecCcchheeccchhhhh
Confidence 34566789999999999999999986655444433333333
No 162
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=23.39 E-value=31 Score=35.37 Aligned_cols=62 Identities=16% Similarity=0.043 Sum_probs=36.4
Q ss_pred EcCCCcCCCccCCCCcEEEEEEecEEEEEEEeCCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCC
Q 048097 102 YAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGLIHFQVNIG 166 (224)
Q Consensus 102 l~pgg~~ppH~Hp~a~Ei~~Vl~G~~~v~~v~~~~~~~k~~~~~l~~GDv~v~P~G~~H~~~N~G 166 (224)
.+-|.-+++-.||-.+.-.|.-.+- +..+..+- |-+-.+++=..||.++||+|.+|.++|.-
T Consensus 762 ~E~~~~~~~v~hPIhDQS~YLd~~l-r~RLkeEy--GVe~WtfvQ~LGdAVfIPAGaPHQVrNLk 823 (889)
T KOG1356|consen 762 KEQGHEVPKVHHPIHDQSWYLDRYL-RRRLKEEY--GVEPWTFVQFLGDAVFIPAGAPHQVRNLK 823 (889)
T ss_pred HHhcCCCCcccCCCcccceeccHHH-HHHHHHHh--CCCccchhhcccceEEecCCCcHHhhhhh
Confidence 3445566666788666655543331 00000000 01223456688999999999999999864
No 163
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=22.28 E-value=78 Score=19.49 Aligned_cols=10 Identities=50% Similarity=1.032 Sum_probs=6.5
Q ss_pred CcceecCcccC
Q 048097 40 DGVFVNGKFCK 50 (224)
Q Consensus 40 ~~~~~~g~~ck 50 (224)
..+.+||. |+
T Consensus 24 G~ViING~-C~ 33 (36)
T PF08194_consen 24 GNVIINGK-CI 33 (36)
T ss_pred CeEEECce-ee
Confidence 45788885 44
No 164
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=20.97 E-value=1e+02 Score=18.34 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=19.1
Q ss_pred CCHHHHHhhcCCCHHHHHHhhhhhc
Q 048097 197 INPDFLGKAFQLDPKIVKDLQDKFI 221 (224)
Q Consensus 197 ~p~~vLa~af~~~~~~v~~l~~~~~ 221 (224)
++.+-+|...|+..++|.++-+++.
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l~ 27 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKLE 27 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHHH
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 6778899999999999998887764
Done!