BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048098
         (222 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
          Length = 59

 Score = 29.3 bits (64), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 91  PGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGPPGLVRAW 141
           PG+ +  + D   +  +  +FK GDTII    H+ D  G   G     R W
Sbjct: 3   PGIQVKALYDYDAQTGDELTFKEGDTIIV---HQKDPAGWWEGELNGKRGW 50


>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
 pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
 pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
 pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
          Length = 58

 Score = 29.3 bits (64), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 91  PGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGPPGLVRAW 141
           PG+ +  + D   +  +  +FK GDTII    H+ D  G   G     R W
Sbjct: 2   PGIQVKALYDYDAQTGDELTFKEGDTIIV---HQKDPAGWWEGELNGKRGW 49


>pdb|1FAD|A Chain A, Death Domain Of Fas-Associated Death Domain Protein,
           Residues 89-183
          Length = 99

 Score = 28.1 bits (61), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 136 GLVRAWRTLRMNLTVDLITD 155
           GLV+A RT R+NL  DL+ +
Sbjct: 76  GLVKALRTCRLNLVADLVEE 95


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,569,856
Number of Sequences: 62578
Number of extensions: 192381
Number of successful extensions: 404
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 402
Number of HSP's gapped (non-prelim): 8
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)