BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048098
         (222 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q86SJ6|DSG4_HUMAN Desmoglein-4 OS=Homo sapiens GN=DSG4 PE=1 SV=1
          Length = 1040

 Score = 33.5 bits (75), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 134 PPGLVRAWRTLRMNLTVDLITDRAMSSPNLSADIESGILVLDSYTRVGGRANILNLF 190
           PPG+   W     N T  ++T + + SP      E  ILV DSY R    A ++ L+
Sbjct: 532 PPGIADMWDVRSTNATSAILTAKQVLSPGF---YEIPILVKDSYNRACELAQMVQLY 585


>sp|Q5RJI2|CTL5_MOUSE Choline transporter-like protein 5 OS=Mus musculus GN=Slc44a5
          PE=2 SV=1
          Length = 710

 Score = 31.2 bits (69), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 1  MAEKKKAPGADHDRLSSGGDDENIMASWAAKARRRRSIKICCCIAALLVILAIVILIIL 59
          MA K+K P       SS GD       +     +R    + CC+  LL IL  V+L +L
Sbjct: 1  MARKRKPP-------SSQGDPRRYDPDFQGPTAKRTCTDVLCCLIFLLFILGYVLLGLL 52


>sp|A9VS12|MUTL_BACWK DNA mismatch repair protein MutL OS=Bacillus weihenstephanensis
           (strain KBAB4) GN=mutL PE=3 SV=1
          Length = 644

 Score = 30.8 bits (68), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 11/90 (12%)

Query: 77  TITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGPPG 136
           ++++LEL+  T   PG ++S+     +K    AS K  D  +  L+            P 
Sbjct: 105 SVSELELITSTGDAPGTHLSIKGGDIIKQEKTASRKGTDITVQNLFF---------NTPA 155

Query: 137 LVRAWRTLRMNL--TVDLITDRAMSSPNLS 164
            ++  +T+   L    D++   AMS P +S
Sbjct: 156 RLKYMKTIHTELGNITDIVYRIAMSHPEVS 185


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.138    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,161,029
Number of Sequences: 539616
Number of extensions: 2976106
Number of successful extensions: 6904
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6902
Number of HSP's gapped (non-prelim): 12
length of query: 222
length of database: 191,569,459
effective HSP length: 113
effective length of query: 109
effective length of database: 130,592,851
effective search space: 14234620759
effective search space used: 14234620759
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)