Query 048098
Match_columns 222
No_of_seqs 127 out of 694
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 06:15:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048098.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048098hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 9.2E-53 2E-57 353.4 28.2 215 1-222 1-219 (219)
2 PF03168 LEA_2: Late embryogen 99.4 2.1E-13 4.6E-18 100.0 6.2 98 100-201 1-100 (101)
3 smart00769 WHy Water Stress an 98.8 8.9E-08 1.9E-12 70.9 10.0 83 91-177 11-95 (100)
4 PF07092 DUF1356: Protein of u 98.4 1.4E-05 3E-10 67.6 14.3 90 57-152 91-181 (238)
5 COG5608 LEA14-like dessication 97.6 0.0064 1.4E-07 48.1 15.0 91 94-189 49-141 (161)
6 PF12751 Vac7: Vacuolar segreg 97.5 0.00066 1.4E-08 61.1 9.1 56 66-129 326-381 (387)
7 PLN03160 uncharacterized prote 94.4 1 2.2E-05 37.9 11.9 47 31-78 33-81 (219)
8 PF06072 Herpes_US9: Alphaherp 91.4 0.056 1.2E-06 35.9 -0.0 30 32-61 27-58 (60)
9 PRK10893 lipopolysaccharide ex 79.5 28 0.0006 28.7 9.9 20 65-84 37-56 (192)
10 PF14927 Neurensin: Neurensin 75.0 1.5 3.2E-05 34.5 1.1 23 46-71 52-74 (140)
11 PRK12785 fliL flagellar basal 73.5 27 0.00058 28.0 8.1 13 112-125 87-99 (166)
12 COG1580 FliL Flagellar basal b 72.0 15 0.00032 29.5 6.2 13 95-107 81-93 (159)
13 PF14155 DUF4307: Domain of un 71.0 41 0.0009 25.2 10.3 55 66-135 29-86 (112)
14 PF11906 DUF3426: Protein of u 68.4 31 0.00068 26.6 7.4 75 71-150 48-134 (149)
15 KOG0810 SNARE protein Syntaxin 65.4 4.3 9.4E-05 35.9 2.0 12 34-45 267-278 (297)
16 PRK05529 cell division protein 62.9 7.5 0.00016 33.4 3.0 46 68-113 58-126 (255)
17 PF11395 DUF2873: Protein of u 62.8 2.6 5.7E-05 25.4 0.1 21 43-64 12-32 (43)
18 PF03302 VSP: Giardia variant- 62.5 5 0.00011 36.8 2.0 27 41-67 370-396 (397)
19 TIGR02588 conserved hypothetic 61.9 25 0.00055 26.9 5.4 19 60-78 25-43 (122)
20 PF11322 DUF3124: Protein of u 58.7 23 0.0005 27.3 4.7 52 93-148 21-75 (125)
21 PF09865 DUF2092: Predicted pe 58.3 1.1E+02 0.0023 25.8 9.1 38 91-129 35-74 (214)
22 PTZ00382 Variant-specific surf 53.5 10 0.00023 27.7 2.0 18 50-67 78-95 (96)
23 PF11837 DUF3357: Domain of un 50.9 5.1 0.00011 29.8 0.0 9 38-46 28-36 (106)
24 PF10177 DUF2371: Uncharacteri 49.9 22 0.00049 27.9 3.5 6 62-67 59-64 (141)
25 PF06024 DUF912: Nucleopolyhed 49.1 20 0.00043 26.4 2.9 27 40-67 64-90 (101)
26 PF04478 Mid2: Mid2 like cell 44.4 29 0.00063 27.7 3.3 35 34-70 47-81 (154)
27 PTZ00200 cysteine proteinase; 44.0 25 0.00054 33.0 3.4 19 47-65 51-69 (448)
28 COG1862 YajC Preprotein transl 44.0 8.9 0.00019 28.2 0.4 23 47-70 11-33 (97)
29 PF04790 Sarcoglycan_1: Sarcog 43.1 11 0.00024 32.7 0.9 16 92-107 83-98 (264)
30 PF12505 DUF3712: Protein of u 42.0 62 0.0013 24.4 4.8 24 94-117 99-122 (125)
31 PHA03164 hypothetical protein; 41.6 21 0.00045 25.1 1.8 11 48-59 68-78 (88)
32 PF07787 DUF1625: Protein of u 41.3 16 0.00035 31.1 1.6 10 57-66 239-248 (248)
33 COG4698 Uncharacterized protei 38.9 9.8 0.00021 31.2 -0.1 17 62-78 32-48 (197)
34 PRK05886 yajC preprotein trans 35.9 11 0.00025 28.3 -0.1 14 57-70 15-28 (109)
35 PF00927 Transglut_C: Transglu 35.0 1.4E+02 0.003 21.5 5.6 57 93-150 13-74 (107)
36 COG5074 t-SNARE complex subuni 35.0 25 0.00054 30.1 1.7 11 32-43 246-256 (280)
37 PF14283 DUF4366: Domain of un 33.9 34 0.00073 28.9 2.4 15 57-71 176-190 (218)
38 KOG3950 Gamma/delta sarcoglyca 33.1 30 0.00065 29.8 1.9 22 89-110 102-124 (292)
39 TIGR00739 yajC preprotein tran 32.7 24 0.00052 25.1 1.1 13 57-69 14-26 (84)
40 PRK07021 fliL flagellar basal 32.2 92 0.002 24.7 4.6 14 41-54 19-32 (162)
41 PRK06531 yajC preprotein trans 31.2 20 0.00044 27.1 0.6 11 60-70 16-26 (113)
42 PF08113 CoxIIa: Cytochrome c 31.0 15 0.00032 21.6 -0.1 15 45-60 9-23 (34)
43 PF05545 FixQ: Cbb3-type cytoc 31.0 21 0.00046 22.4 0.6 8 60-68 27-34 (49)
44 KOG0809 SNARE protein TLG2/Syn 30.9 49 0.0011 29.2 2.9 10 39-48 282-291 (305)
45 PF15145 DUF4577: Domain of un 30.1 38 0.00082 25.6 1.8 11 5-17 32-42 (128)
46 cd01324 cbb3_Oxidase_CcoQ Cyto 30.0 25 0.00054 22.3 0.7 6 63-68 30-35 (48)
47 PRK07718 fliL flagellar basal 29.8 55 0.0012 25.5 2.8 20 47-67 12-31 (142)
48 PF09624 DUF2393: Protein of u 29.8 2.6E+02 0.0056 21.5 6.7 36 94-130 61-96 (149)
49 PF12505 DUF3712: Protein of u 29.7 2.4E+02 0.0052 21.1 6.4 62 127-192 2-65 (125)
50 PF15018 InaF-motif: TRP-inter 29.5 50 0.0011 20.0 1.9 29 36-65 3-32 (38)
51 KOG3927 Na+/K+ ATPase, beta su 29.5 24 0.00052 31.3 0.8 61 14-75 15-83 (300)
52 COG5353 Uncharacterized protei 29.2 39 0.00085 26.9 1.8 31 36-67 4-34 (161)
53 PF10907 DUF2749: Protein of u 28.6 68 0.0015 21.8 2.6 16 51-67 13-28 (66)
54 TIGR00996 Mtu_fam_mce virulenc 28.3 92 0.002 26.8 4.3 13 119-131 49-61 (291)
55 PF06919 Phage_T4_Gp30_7: Phag 26.9 1.4E+02 0.0031 22.3 4.4 38 105-142 40-77 (121)
56 PHA02673 ORF109 EEV glycoprote 26.2 29 0.00062 27.8 0.6 26 17-42 6-36 (161)
57 PRK05585 yajC preprotein trans 25.6 29 0.00062 25.9 0.5 13 57-69 29-41 (106)
58 PF05478 Prominin: Prominin; 25.4 34 0.00073 34.4 1.1 23 36-58 136-158 (806)
59 PF04573 SPC22: Signal peptida 25.3 80 0.0017 25.7 3.1 17 104-125 78-95 (175)
60 PRK08455 fliL flagellar basal 24.9 39 0.00084 27.6 1.2 7 63-69 41-47 (182)
61 PF13598 DUF4139: Domain of un 23.8 3.7E+02 0.008 23.3 7.3 35 98-135 169-203 (317)
62 PF12751 Vac7: Vacuolar segreg 23.4 30 0.00064 31.7 0.3 31 47-79 312-344 (387)
63 PF14874 PapD-like: Flagellar- 23.0 2.7E+02 0.006 19.5 9.6 53 95-151 20-72 (102)
64 PF04881 Adeno_GP19K: Adenovir 22.8 79 0.0017 24.5 2.4 10 59-68 121-130 (139)
65 PF09307 MHC2-interact: CLIP, 21.9 30 0.00065 26.2 0.0 30 37-68 31-60 (114)
66 PF10830 DUF2553: Protein of u 20.9 2E+02 0.0043 20.2 3.9 29 106-135 7-35 (76)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=9.2e-53 Score=353.42 Aligned_cols=215 Identities=56% Similarity=0.891 Sum_probs=198.1
Q ss_pred CCccC----CCCCCCcCCCCCCCCchhhcccchhhhcccCceeEeehHHHHHHHHHHHHHHheeeEEeeecCCeEEEEeE
Q 048098 1 MAEKK----KAPGADHDRLSSGGDDENIMASWAAKARRRRSIKICCCIAALLVILAIVILIILIFTVFRVKNPKIRLNNW 76 (222)
Q Consensus 1 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~lv~l~~i~~lil~~lv~rPk~P~~~v~s~ 76 (222)
|||++ |||++. +.|| |||+.+ +.+.++|+++|.+||+|+++++++|++++ ++++|++||||.|+|+|+++
T Consensus 1 ~~~~~~~~p~a~~~~--~~~~--d~~~~~-~~~~~~~r~~~~~c~~~~~a~~l~l~~v~-~~l~~~vfrPk~P~~~v~~v 74 (219)
T PLN03160 1 MAETEQVRPLAPAAF--RLRS--DEEEAT-NHLKKTRRRNCIKCCGCITATLLILATTI-LVLVFTVFRVKDPVIKMNGV 74 (219)
T ss_pred CCccccCCCCCCCcc--cccC--chhhcC-cchhccccccceEEHHHHHHHHHHHHHHH-HheeeEEEEccCCeEEEEEE
Confidence 99999 999999 9999 777766 77766778888999999888888888888 88889999999999999999
Q ss_pred EEeeEEeecCCCCCceEEEEEEEEEEEeCCCeEEEEECCCeEEEEEECCeEEeeeEcCCceeecCceEEEEEEEEEeeec
Q 048098 77 TITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGPPGLVRAWRTLRMNLTVDLITDR 156 (222)
Q Consensus 77 ~v~~f~~~~~~~~~~~ln~~l~~~v~v~NPN~~~i~Y~~~~~~~v~Y~g~~lg~~~vp~f~q~~~~~~~v~~~v~~~~~~ 156 (222)
++++|++++++.+...+|+++.++++++|||+++|+|++++ +.++|+|+.+|++.+|+|+|++++++++++++.+.+.+
T Consensus 75 ~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~~~~~Y~~~~-~~v~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~ 153 (219)
T PLN03160 75 TVTKLELINNTTLRPGTNITLIADVSVKNPNVASFKYSNTT-TTIYYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDK 153 (219)
T ss_pred EEeeeeeccCCCCceeEEEEEEEEEEEECCCceeEEEcCeE-EEEEECCEEEEEEEcCCcccCCCCeEEEEEEEEEEece
Confidence 99999997533456789999999999999999999999999 99999999999999999999999999999999988887
Q ss_pred ccCCccccccccCCeEEEEEEEEEEEEEEEeEEEeEeeEEEEEeEEEEeCCCCeEEeceeeccccC
Q 048098 157 AMSSPNLSADIESGILVLDSYTRVGGRANILNLFKRHVVVKFNCSSQLNTTSLQIYQFNCKRKVQF 222 (222)
Q Consensus 157 l~~~~~l~~d~~~G~v~l~~~~~v~~rv~vlg~~~~~~~~~v~C~~~v~~~~~~v~~~~C~~k~k~ 222 (222)
+..+++|.+|+++|.++|+++++++||++++++++++++++++|++.|+..+.++++++|+.++++
T Consensus 154 ~~~~~~L~~D~~~G~v~l~~~~~v~gkVkv~~i~k~~v~~~v~C~v~V~~~~~~i~~~~C~~~~~~ 219 (219)
T PLN03160 154 ILSVPGLLTDISSGLLNMNSYTRIGGKVKILKIIKKHVVVKMNCTMTVNITSQAIQGQKCKRHVDL 219 (219)
T ss_pred eccchhHHHHhhCCeEEEEEEEEEEEEEEEEEEEEEEEEEEEEeEEEEECCCCEEeccEecccccC
Confidence 776788999999999999999999999999999999999999999999999999999999999985
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.43 E-value=2.1e-13 Score=100.01 Aligned_cols=98 Identities=23% Similarity=0.326 Sum_probs=73.7
Q ss_pred EEEEeCCCeEEEEECCCeEEEEEECCeEEe-eeEcCCceeecCceEEEEEEEEEeeecccCCccccccccCCeEEEEEEE
Q 048098 100 DMSVKNPNVASFKYGDTIITGLYHRGDLVG-EARGPPGLVRAWRTLRMNLTVDLITDRAMSSPNLSADIESGILVLDSYT 178 (222)
Q Consensus 100 ~v~v~NPN~~~i~Y~~~~~~~v~Y~g~~lg-~~~vp~f~q~~~~~~~v~~~v~~~~~~l~~~~~l~~d~~~G~v~l~~~~ 178 (222)
+++++|||.++++|++.+ ++++|+|..+| ....++|+|++++++.+.+++.++...+. ..+.++. +|..++++..
T Consensus 1 ~l~v~NPN~~~i~~~~~~-~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l~--~~l~~~~-~~~~~~~v~~ 76 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIE-YDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDLP--RLLKDLL-AGRVPFDVTY 76 (101)
T ss_dssp EEEEEESSSS-EEEEEEE-EEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHHH--HHHHHHH-HTTSCEEEEE
T ss_pred CEEEECCCceeEEEeCEE-EEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHHH--HHHHhhh-ccccceEEEE
Confidence 578999999999999999 99999999999 77889999999999999998888775542 3444455 6677888888
Q ss_pred EEEEEEEEe-EEEeEeeEEEEEeE
Q 048098 179 RVGGRANIL-NLFKRHVVVKFNCS 201 (222)
Q Consensus 179 ~v~~rv~vl-g~~~~~~~~~v~C~ 201 (222)
+++++++++ .....+....++|+
T Consensus 77 ~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 77 RIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred EEEEEEEEcccceeeeEEEeEEeE
Confidence 999999963 33233444455553
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.77 E-value=8.9e-08 Score=70.89 Aligned_cols=83 Identities=19% Similarity=0.252 Sum_probs=66.6
Q ss_pred ceEEEEEEEEEEEeCCCeEEEEECCCeEEEEEECCeEEeeeEcC-CceeecCceEEEEEEEEEeeecccCCccccccccC
Q 048098 91 PGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGP-PGLVRAWRTLRMNLTVDLITDRAMSSPNLSADIES 169 (222)
Q Consensus 91 ~~ln~~l~~~v~v~NPN~~~i~Y~~~~~~~v~Y~g~~lg~~~vp-~f~q~~~~~~~v~~~v~~~~~~l~~~~~l~~d~~~ 169 (222)
..++.++.+.++++|||-+.+.|.+.+ ..++|+|..+|++..+ ++.+++++++.+.+++.+.. .. ...+..++.+
T Consensus 11 ~~~~~~~~l~l~v~NPN~~~l~~~~~~-y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~~-~~--~~~~~~~l~~ 86 (100)
T smart00769 11 SGLEIEIVLKVKVQNPNPFPIPVNGLS-YDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVNL-FL--AEALIWHIAN 86 (100)
T ss_pred cceEEEEEEEEEEECCCCCccccccEE-EEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEeeh-hH--hHHHHHhhcc
Confidence 367889999999999999999999999 9999999999999996 79999999999999988732 22 1455566655
Q ss_pred Ce-EEEEEE
Q 048098 170 GI-LVLDSY 177 (222)
Q Consensus 170 G~-v~l~~~ 177 (222)
|. ++.+++
T Consensus 87 ~~~~~y~l~ 95 (100)
T smart00769 87 GEEIPYRLD 95 (100)
T ss_pred CCCccEEEE
Confidence 53 444433
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=98.39 E-value=1.4e-05 Score=67.65 Aligned_cols=90 Identities=12% Similarity=0.217 Sum_probs=66.1
Q ss_pred HheeeEEeeecCCeEEEEeEEEeeEEeecCCCCCceEEEEEEEEEEEeCCCeEEEEECCCeEEEEEECCeEEeeeEcCCc
Q 048098 57 IILIFTVFRVKNPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGPPG 136 (222)
Q Consensus 57 lil~~lv~rPk~P~~~v~s~~v~~f~~~~~~~~~~~ln~~l~~~v~v~NPN~~~i~Y~~~~~~~v~Y~g~~lg~~~vp~f 136 (222)
|++||| -||.-.++-.++......++.. ...+..++.-.+.+.|||++.+...+.. +.+.|....+|.+.....
T Consensus 91 L~iFFL--fPRsV~v~~~gv~s~~V~f~~~---~~~v~l~itn~lNIsN~NFy~V~Vt~~s-~qv~~~~~VVG~~~~~~~ 164 (238)
T PF07092_consen 91 LVIFFL--FPRSVTVSPVGVKSVTVSFNPD---KSTVQLNITNTLNISNPNFYPVTVTNLS-IQVLYMKTVVGKGKNSNI 164 (238)
T ss_pred heEEEE--eCcEEEEecCcEEEEEEEEeCC---CCEEEEEEEEEEEccCCCEEEEEEEeEE-EEEEEEEeEEeeeEecce
Confidence 555554 4887666555544444445421 2356777788999999999999999999 999999999999987654
Q ss_pred -eeecCceEEEEEEEEE
Q 048098 137 -LVRAWRTLRMNLTVDL 152 (222)
Q Consensus 137 -~q~~~~~~~v~~~v~~ 152 (222)
.+++++.+.+..++..
T Consensus 165 ~~I~Prs~~q~~~tV~t 181 (238)
T PF07092_consen 165 TVIGPRSSKQVNYTVKT 181 (238)
T ss_pred EEecccCCceEEEEeeE
Confidence 6788888777766543
No 5
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.61 E-value=0.0064 Score=48.14 Aligned_cols=91 Identities=14% Similarity=0.187 Sum_probs=66.9
Q ss_pred EEEEEEEEEEeCCCeEEEEECCCeEEEEEECCeEEeeeEc-CCceeecCceEEEEEEEEEeeecccCCccccccccCCeE
Q 048098 94 NISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARG-PPGLVRAWRTLRMNLTVDLITDRAMSSPNLSADIESGIL 172 (222)
Q Consensus 94 n~~l~~~v~v~NPN~~~i~Y~~~~~~~v~Y~g~~lg~~~v-p~f~q~~~~~~~v~~~v~~~~~~l~~~~~l~~d~~~G~v 172 (222)
...+-.++.++|||-+.+-..... ..++-+|..+|++.. .++..++++..++.+++.++..++- ..+...+.+|+=
T Consensus 49 ~~EiV~t~KiyNPN~fPipVtgl~-y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~l~~d~~~~k--e~w~~hi~ngEr 125 (161)
T COG5608 49 ETEIVGTLKIYNPNPFPIPVTGLQ-YAVYMNDIKIGEGEILKGTTVPPNSRETVDVPLRLDNSKIK--EWWVTHIENGER 125 (161)
T ss_pred ceEEEEEEEecCCCCcceeeeceE-EEEEEcceEeeccccccceEECCCCeEEEEEEEEEehHHHH--HHHHHHhhccCc
Confidence 456678899999999999888898 999999999999976 5688999999999999887765442 234446666653
Q ss_pred -EEEEEEEEEEEEEEeEE
Q 048098 173 -VLDSYTRVGGRANILNL 189 (222)
Q Consensus 173 -~l~~~~~v~~rv~vlg~ 189 (222)
++. .++.+.+++++.
T Consensus 126 s~Ir--~~i~~~v~vg~~ 141 (161)
T COG5608 126 STIR--VRIKGVVKVGGM 141 (161)
T ss_pred ccEE--EEEEEEEEEccE
Confidence 333 334455555543
No 6
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=97.49 E-value=0.00066 Score=61.12 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=37.9
Q ss_pred ecCCeEEEEeEEEeeEEeecCCCCCceEEEEEEEEEEEeCCCeEEEEECCCeEEEEEECCeEEe
Q 048098 66 VKNPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVG 129 (222)
Q Consensus 66 Pk~P~~~v~s~~v~~f~~~~~~~~~~~ln~~l~~~v~v~NPN~~~i~Y~~~~~~~v~Y~g~~lg 129 (222)
-.+|--.|+=+.+++.-.+ .--+-|+++|.+.|||++.|..++.+ ++++-+-.-+|
T Consensus 326 ttKpL~~v~v~~I~NVlaS-------~qELmfdl~V~A~NPn~~~V~I~d~d-ldIFAKS~yvg 381 (387)
T PF12751_consen 326 TTKPLTDVQVVSIQNVLAS-------EQELMFDLTVEAFNPNWFTVTIDDMD-LDIFAKSRYVG 381 (387)
T ss_pred cCcccccceEEEeeeeeec-------cceEEEeeEEEEECCCeEEEEeccce-eeeEecCCccC
Confidence 3444444444444444333 33566778999999999999999999 99987655444
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=94.40 E-value=1 Score=37.94 Aligned_cols=47 Identities=9% Similarity=0.138 Sum_probs=21.6
Q ss_pred hhcccCceeEeehHHHHHHHHHHHHHHheeeEEeeec--CCeEEEEeEEE
Q 048098 31 KARRRRSIKICCCIAALLVILAIVILIILIFTVFRVK--NPKIRLNNWTI 78 (222)
Q Consensus 31 ~~~~~~~~~c~~~~~~~lv~l~~i~~lil~~lv~rPk--~P~~~v~s~~v 78 (222)
+||+++|+.|++.++++++++++++ +.+.|-.=.|+ --.++++++.+
T Consensus 33 r~~~~~c~~~~~a~~l~l~~v~~~l-~~~vfrPk~P~~~v~~v~l~~~~~ 81 (219)
T PLN03160 33 RRNCIKCCGCITATLLILATTILVL-VFTVFRVKDPVIKMNGVTVTKLEL 81 (219)
T ss_pred cccceEEHHHHHHHHHHHHHHHHhe-eeEEEEccCCeEEEEEEEEeeeee
Confidence 4555555666655544444444444 32223344554 23444444443
No 8
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=91.40 E-value=0.056 Score=35.93 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=12.3
Q ss_pred hcccCceeEeehHHHH--HHHHHHHHHHheee
Q 048098 32 ARRRRSIKICCCIAAL--LVILAIVILIILIF 61 (222)
Q Consensus 32 ~~~~~~~~c~~~~~~~--lv~l~~i~~lil~~ 61 (222)
||+|+|..|.++++++ +.++++++|.+++|
T Consensus 27 ~RrRrc~~~v~~v~~~~~~c~~S~~lG~~~~~ 58 (60)
T PF06072_consen 27 RRRRRCRLAVAIVFAVVALCVLSGGLGALVAW 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455444344433332 22333443344444
No 9
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=79.46 E-value=28 Score=28.70 Aligned_cols=20 Identities=5% Similarity=0.008 Sum_probs=16.6
Q ss_pred eecCCeEEEEeEEEeeEEee
Q 048098 65 RVKNPKIRLNNWTITKLELV 84 (222)
Q Consensus 65 rPk~P~~~v~s~~v~~f~~~ 84 (222)
.++.|.|.+++++...|+.+
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~ 56 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPE 56 (192)
T ss_pred CCCCCCEEEeccEEEEECCC
Confidence 46779999999998888765
No 10
>PF14927 Neurensin: Neurensin
Probab=75.03 E-value=1.5 Score=34.49 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHheeeEEeeecCCeE
Q 048098 46 ALLVILAIVILIILIFTVFRVKNPKI 71 (222)
Q Consensus 46 ~~lv~l~~i~~lil~~lv~rPk~P~~ 71 (222)
++++++|+++ +++.|++ |+.++.
T Consensus 52 ~l~Ll~Gi~~-l~vgY~v--P~~~e~ 74 (140)
T PF14927_consen 52 LLLLLLGIVA-LTVGYLV--PPKIEV 74 (140)
T ss_pred HHHHHHHHHH-HHhhccc--CCccee
Confidence 3455555555 7777765 655543
No 11
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=73.50 E-value=27 Score=28.02 Aligned_cols=13 Identities=15% Similarity=0.023 Sum_probs=5.6
Q ss_pred EECCCeEEEEEECC
Q 048098 112 KYGDTIITGLYHRG 125 (222)
Q Consensus 112 ~Y~~~~~~~v~Y~g 125 (222)
+|=... +.+.+++
T Consensus 87 ryLkv~-i~L~~~~ 99 (166)
T PRK12785 87 QYLKLK-VVLEVKD 99 (166)
T ss_pred eEEEEE-EEEEECC
Confidence 443344 4444444
No 12
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=71.97 E-value=15 Score=29.48 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=5.8
Q ss_pred EEEEEEEEEeCCC
Q 048098 95 ISLIADMSVKNPN 107 (222)
Q Consensus 95 ~~l~~~v~v~NPN 107 (222)
+...+++.+.|-+
T Consensus 81 v~i~i~l~~~n~~ 93 (159)
T COG1580 81 VKIAITLEVANKA 93 (159)
T ss_pred EEEEEEEeeCCHH
Confidence 3334444554443
No 13
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=70.95 E-value=41 Score=25.15 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=26.5
Q ss_pred ecCCeEEEEeEEEeeEEeecCCCCCceEEEEEEEEEEEeCCCe-EEEEECCCeEEEEEECCeEEeeeE--cCC
Q 048098 66 VKNPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNV-ASFKYGDTIITGLYHRGDLVGEAR--GPP 135 (222)
Q Consensus 66 Pk~P~~~v~s~~v~~f~~~~~~~~~~~ln~~l~~~v~v~NPN~-~~i~Y~~~~~~~v~Y~g~~lg~~~--vp~ 135 (222)
...|.+ +....+|...++ ..+.++|++ +- +|.. .-=.. -...|++..+|.-. +|+
T Consensus 29 ~~~~~v---~~~~~gf~vv~d----~~v~v~f~V--tr-~~~~~a~C~V-----rA~~~d~aeVGrreV~vp~ 86 (112)
T PF14155_consen 29 FGSPPV---SAEVIGFEVVDD----STVEVTFDV--TR-DPGRPAVCIV-----RALDYDGAEVGRREVLVPP 86 (112)
T ss_pred ccCCCc---eEEEEEEEECCC----CEEEEEEEE--EE-CCCCCEEEEE-----EEEeCCCCEEEEEEEEECC
Confidence 455655 344445555422 245555443 33 3663 22111 12337788888644 565
No 14
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=68.41 E-value=31 Score=26.62 Aligned_cols=75 Identities=11% Similarity=0.045 Sum_probs=45.6
Q ss_pred EEEEeEEEeeEEeecCCCCCceEEEEEEEEEEEeCCCeEEEEECCCeEEEEE-ECCeEEeeeEc-C----------Ccee
Q 048098 71 IRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGLY-HRGDLVGEARG-P----------PGLV 138 (222)
Q Consensus 71 ~~v~s~~v~~f~~~~~~~~~~~ln~~l~~~v~v~NPN~~~i~Y~~~~~~~v~-Y~g~~lg~~~v-p----------~f~q 138 (222)
-.++.+++.+..+...+ .-+-.+.++.+++|.......|-..+ +.++ -+|+.+.+-.+ | .-..
T Consensus 48 ~~~~~l~i~~~~~~~~~----~~~~~l~v~g~i~N~~~~~~~~P~l~-l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l 122 (149)
T PF11906_consen 48 RDIDALKIESSDLRPVP----DGPGVLVVSGTIRNRADFPQALPALE-LSLLDAQGQPLARRVFTPADYLPPGLAAQAGL 122 (149)
T ss_pred cCcceEEEeeeeEEeec----CCCCEEEEEEEEEeCCCCcccCceEE-EEEECCCCCEEEEEEEChHHhccccccccccc
Confidence 35556666554444211 11333455667899998888888888 8876 67888887666 4 2234
Q ss_pred ecCceEEEEEEE
Q 048098 139 RAWRTLRMNLTV 150 (222)
Q Consensus 139 ~~~~~~~v~~~v 150 (222)
+++.+..+...+
T Consensus 123 ~pg~~~~~~~~~ 134 (149)
T PF11906_consen 123 PPGESVPFRLRL 134 (149)
T ss_pred CCCCeEEEEEEe
Confidence 555555554443
No 15
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.36 E-value=4.3 Score=35.86 Aligned_cols=12 Identities=25% Similarity=0.080 Sum_probs=4.9
Q ss_pred ccCceeEeehHH
Q 048098 34 RRRSIKICCCIA 45 (222)
Q Consensus 34 ~~~~~~c~~~~~ 45 (222)
.|++.+||++++
T Consensus 267 aRK~k~i~ii~~ 278 (297)
T KOG0810|consen 267 ARKWKIIIIIIL 278 (297)
T ss_pred hhhceeeeehHH
Confidence 343444444333
No 16
>PRK05529 cell division protein FtsQ; Provisional
Probab=62.89 E-value=7.5 Score=33.44 Aligned_cols=46 Identities=15% Similarity=0.150 Sum_probs=27.5
Q ss_pred CCeEEEEeEEEeeEEeec--------CC-CCCceEEEE--------------EEEEEEEeCCCeEEEEE
Q 048098 68 NPKIRLNNWTITKLELVN--------GT-IPKPGVNIS--------------LIADMSVKNPNVASFKY 113 (222)
Q Consensus 68 ~P~~~v~s~~v~~f~~~~--------~~-~~~~~ln~~--------------l~~~v~v~NPN~~~i~Y 113 (222)
.|.|.|.++.|++-...+ +. .....+.++ =++.++-+.||.+.|+-
T Consensus 58 Sp~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~P~tl~I~V 126 (255)
T PRK05529 58 SPLLALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKPPGTIVVRV 126 (255)
T ss_pred CCceEEEEEEEECCccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeCCCEEEEEE
Confidence 589999999998654321 00 011111111 25678889999777665
No 17
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=62.77 E-value=2.6 Score=25.38 Aligned_cols=21 Identities=24% Similarity=0.760 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHheeeEEe
Q 048098 43 CIAALLVILAIVILIILIFTVF 64 (222)
Q Consensus 43 ~~~~~lv~l~~i~~lil~~lv~ 64 (222)
|.+++++.+.+|. ++++|.++
T Consensus 12 c~l~~llflv~im-liif~f~l 32 (43)
T PF11395_consen 12 CFLSFLLFLVIIM-LIIFWFSL 32 (43)
T ss_pred HHHHHHHHHHHHH-HHHHHHHH
Confidence 4445555555666 66666554
No 18
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=62.50 E-value=5 Score=36.84 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=17.9
Q ss_pred eehHHHHHHHHHHHHHHheeeEEeeec
Q 048098 41 CCCIAALLVILAIVILIILIFTVFRVK 67 (222)
Q Consensus 41 ~~~~~~~lv~l~~i~~lil~~lv~rPk 67 (222)
....++++|+++++++++.||++.|=|
T Consensus 370 aGIsvavvvvVgglvGfLcWwf~crgk 396 (397)
T PF03302_consen 370 AGISVAVVVVVGGLVGFLCWWFICRGK 396 (397)
T ss_pred eeeeehhHHHHHHHHHHHhhheeeccc
Confidence 333445555666666688899998855
No 19
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=61.90 E-value=25 Score=26.92 Aligned_cols=19 Identities=5% Similarity=0.071 Sum_probs=14.0
Q ss_pred eeEEeeecCCeEEEEeEEE
Q 048098 60 IFTVFRVKNPKIRLNNWTI 78 (222)
Q Consensus 60 ~~lv~rPk~P~~~v~s~~v 78 (222)
.|+.-++++|.+.+.....
T Consensus 25 ~~l~~~~~pp~l~v~~~~~ 43 (122)
T TIGR02588 25 DWLRYSNKAAVLEVAPAEV 43 (122)
T ss_pred HhhccCCCCCeEEEeehhe
Confidence 4667778899998776554
No 20
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=58.68 E-value=23 Score=27.27 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=33.1
Q ss_pred EEEEEEEEEEEeCCC-eEEEEECCCeEEEEEEC--CeEEeeeEcCCceeecCceEEEEE
Q 048098 93 VNISLIADMSVKNPN-VASFKYGDTIITGLYHR--GDLVGEARGPPGLVRAWRTLRMNL 148 (222)
Q Consensus 93 ln~~l~~~v~v~NPN-~~~i~Y~~~~~~~v~Y~--g~~lg~~~vp~f~q~~~~~~~v~~ 148 (222)
....|++++++||.+ +-.++-...+ ||+ |..|-+---.|.+.++-++..+-+
T Consensus 21 ~~~~Lt~tLSiRNtd~~~~i~i~~v~----Yydt~G~lvr~yl~~Pi~L~Pl~t~~~vV 75 (125)
T PF11322_consen 21 RPFNLTATLSIRNTDPTDPIYITSVD----YYDTDGKLVRSYLDKPIYLKPLATTEFVV 75 (125)
T ss_pred ceEeEEEEEEEEcCCCCCCEEEEEEE----EECCCCeEhHHhcCCCeEcCCCceEEEEE
Confidence 345567788999988 5566654444 453 566655555567777777665443
No 21
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=58.35 E-value=1.1e+02 Score=25.77 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=30.1
Q ss_pred ceEEEEEEEEEEEeCCCeEEEEE--CCCeEEEEEECCeEEe
Q 048098 91 PGVNISLIADMSVKNPNVASFKY--GDTIITGLYHRGDLVG 129 (222)
Q Consensus 91 ~~ln~~l~~~v~v~NPN~~~i~Y--~~~~~~~v~Y~g~~lg 129 (222)
..+..+-+.++.++=|||+.+.+ +..+ ..++|+|..+-
T Consensus 35 qklq~~~~~~v~v~RPdklr~~~~gd~~~-~~~~yDGkt~T 74 (214)
T PF09865_consen 35 QKLQFSSSGTVTVQRPDKLRIDRRGDGAD-REFYYDGKTFT 74 (214)
T ss_pred ceEEEEEEEEEEEeCCCeEEEEEEcCCcc-eEEEECCCEEE
Confidence 45777778899999999988887 4455 88999998754
No 22
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=53.48 E-value=10 Score=27.68 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=9.4
Q ss_pred HHHHHHHHheeeEEeeec
Q 048098 50 ILAIVILIILIFTVFRVK 67 (222)
Q Consensus 50 ~l~~i~~lil~~lv~rPk 67 (222)
++++++++++||+++|-|
T Consensus 78 ~v~~lv~~l~w~f~~r~k 95 (96)
T PTZ00382 78 VVGGLVGFLCWWFVCRGK 95 (96)
T ss_pred HHHHHHHHHhheeEEeec
Confidence 333333256677777643
No 23
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=50.95 E-value=5.1 Score=29.85 Aligned_cols=9 Identities=22% Similarity=0.268 Sum_probs=0.0
Q ss_pred eeEeehHHH
Q 048098 38 IKICCCIAA 46 (222)
Q Consensus 38 ~~c~~~~~~ 46 (222)
.+|+..+++
T Consensus 28 ~k~~~~i~~ 36 (106)
T PF11837_consen 28 LKCLAAIFS 36 (106)
T ss_dssp ---------
T ss_pred chhHHHHHH
Confidence 455554443
No 24
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=49.95 E-value=22 Score=27.94 Aligned_cols=6 Identities=17% Similarity=0.019 Sum_probs=4.3
Q ss_pred EEeeec
Q 048098 62 TVFRVK 67 (222)
Q Consensus 62 lv~rPk 67 (222)
+-|||+
T Consensus 59 ~GYwp~ 64 (141)
T PF10177_consen 59 LGYWPK 64 (141)
T ss_pred eecccc
Confidence 456888
No 25
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=49.15 E-value=20 Score=26.38 Aligned_cols=27 Identities=26% Similarity=0.510 Sum_probs=13.4
Q ss_pred EeehHHHHHHHHHHHHHHheeeEEeeec
Q 048098 40 ICCCIAALLVILAIVILIILIFTVFRVK 67 (222)
Q Consensus 40 c~~~~~~~lv~l~~i~~lil~~lv~rPk 67 (222)
+++.++++++++.++. +|.||.++|=|
T Consensus 64 ili~lls~v~IlVily-~IyYFVILRer 90 (101)
T PF06024_consen 64 ILISLLSFVCILVILY-AIYYFVILRER 90 (101)
T ss_pred hHHHHHHHHHHHHHHh-hheEEEEEecc
Confidence 3333444444444444 55566666544
No 26
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=44.36 E-value=29 Score=27.69 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=17.5
Q ss_pred ccCceeEeehHHHHHHHHHHHHHHheeeEEeeecCCe
Q 048098 34 RRRSIKICCCIAALLVILAIVILIILIFTVFRVKNPK 70 (222)
Q Consensus 34 ~~~~~~c~~~~~~~lv~l~~i~~lil~~lv~rPk~P~ 70 (222)
.|+...-|++-+.+.++|+++ +++||+..|+|.=.
T Consensus 47 nknIVIGvVVGVGg~ill~il--~lvf~~c~r~kktd 81 (154)
T PF04478_consen 47 NKNIVIGVVVGVGGPILLGIL--ALVFIFCIRRKKTD 81 (154)
T ss_pred CccEEEEEEecccHHHHHHHH--HhheeEEEecccCc
Confidence 334455554444344444433 34466677777643
No 27
>PTZ00200 cysteine proteinase; Provisional
Probab=44.05 E-value=25 Score=32.95 Aligned_cols=19 Identities=26% Similarity=0.238 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHheeeEEee
Q 048098 47 LLVILAIVILIILIFTVFR 65 (222)
Q Consensus 47 ~lv~l~~i~~lil~~lv~r 65 (222)
++++|++++..+.++++.+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~ 69 (448)
T PTZ00200 51 VFLFLAIGGSIVSYVLVSK 69 (448)
T ss_pred HHHHHHHHhheEEEEEEEe
Confidence 3333333331345666666
No 28
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=43.96 E-value=8.9 Score=28.21 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHheeeEEeeecCCe
Q 048098 47 LLVILAIVILIILIFTVFRVKNPK 70 (222)
Q Consensus 47 ~lv~l~~i~~lil~~lv~rPk~P~ 70 (222)
.++.+.+++ +++||+++||+.=+
T Consensus 11 ~ll~~vl~~-~ifyFli~RPQrKr 33 (97)
T COG1862 11 LLLPLVLIF-AIFYFLIIRPQRKR 33 (97)
T ss_pred HHHHHHHHH-HHHHHhhcCHHHHH
Confidence 344444444 66788899997643
No 29
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=43.08 E-value=11 Score=32.74 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=9.4
Q ss_pred eEEEEEEEEEEEeCCC
Q 048098 92 GVNISLIADMSVKNPN 107 (222)
Q Consensus 92 ~ln~~l~~~v~v~NPN 107 (222)
.+..+=.+.+.++|+|
T Consensus 83 ~i~s~~~v~~~~r~~~ 98 (264)
T PF04790_consen 83 VIQSSRNVTLNARNEN 98 (264)
T ss_pred EEEecCceEEEEecCC
Confidence 3444434666777877
No 30
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=42.03 E-value=62 Score=24.36 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=18.3
Q ss_pred EEEEEEEEEEeCCCeEEEEECCCe
Q 048098 94 NISLIADMSVKNPNVASFKYGDTI 117 (222)
Q Consensus 94 n~~l~~~v~v~NPN~~~i~Y~~~~ 117 (222)
..++.+++.+.||..+++..++..
T Consensus 99 g~~~~~~~~l~NPS~~ti~lG~v~ 122 (125)
T PF12505_consen 99 GINLNATVTLPNPSPLTIDLGNVT 122 (125)
T ss_pred cEEEEEEEEEcCCCeEEEEeccEE
Confidence 344567788899998888887766
No 31
>PHA03164 hypothetical protein; Provisional
Probab=41.63 E-value=21 Score=25.11 Aligned_cols=11 Identities=18% Similarity=0.703 Sum_probs=4.5
Q ss_pred HHHHHHHHHHhe
Q 048098 48 LVILAIVILIIL 59 (222)
Q Consensus 48 lv~l~~i~~lil 59 (222)
+.++..++ +++
T Consensus 68 IamILfii-fvl 78 (88)
T PHA03164 68 IAMILFII-FVL 78 (88)
T ss_pred HHHHHHHH-HHH
Confidence 33333444 444
No 32
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=41.31 E-value=16 Score=31.13 Aligned_cols=10 Identities=30% Similarity=0.561 Sum_probs=7.1
Q ss_pred HheeeEEeee
Q 048098 57 IILIFTVFRV 66 (222)
Q Consensus 57 lil~~lv~rP 66 (222)
+.+.|+.+||
T Consensus 239 Ia~aW~~yRP 248 (248)
T PF07787_consen 239 IALAWLFYRP 248 (248)
T ss_pred HHHhheeeCc
Confidence 3357888888
No 33
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.90 E-value=9.8 Score=31.18 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=13.3
Q ss_pred EEeeecCCeEEEEeEEE
Q 048098 62 TVFRVKNPKIRLNNWTI 78 (222)
Q Consensus 62 lv~rPk~P~~~v~s~~v 78 (222)
.++.|+.|..++.+.+=
T Consensus 32 ~vlsp~ee~t~~~~a~~ 48 (197)
T COG4698 32 FVLSPREEPTHLEDASE 48 (197)
T ss_pred eeccCCCCCchhhccCc
Confidence 58899998878777664
No 34
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=35.88 E-value=11 Score=28.25 Aligned_cols=14 Identities=7% Similarity=-0.017 Sum_probs=9.4
Q ss_pred HheeeEEeeecCCe
Q 048098 57 IILIFTVFRVKNPK 70 (222)
Q Consensus 57 lil~~lv~rPk~P~ 70 (222)
+++||+.+||+.=+
T Consensus 15 ~i~yF~~iRPQkKr 28 (109)
T PRK05886 15 GGFMYFASRRQRKA 28 (109)
T ss_pred HHHHHHHccHHHHH
Confidence 44567788998543
No 35
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=35.05 E-value=1.4e+02 Score=21.50 Aligned_cols=57 Identities=12% Similarity=0.056 Sum_probs=32.3
Q ss_pred EEEEEEEEEEEeCCC--eE-EEEECCCeEEEEEECCeEEe--eeEcCCceeecCceEEEEEEE
Q 048098 93 VNISLIADMSVKNPN--VA-SFKYGDTIITGLYHRGDLVG--EARGPPGLVRAWRTLRMNLTV 150 (222)
Q Consensus 93 ln~~l~~~v~v~NPN--~~-~i~Y~~~~~~~v~Y~g~~lg--~~~vp~f~q~~~~~~~v~~~v 150 (222)
++-.+.+.+++.||. .+ .+...=.. ..++|.|.... .-.......+++++..+...+
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~-~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i 74 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCA-FTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTI 74 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEE-EEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEE-EEEEECCcccccEeEEEcceeeCCCCEEEEEEEE
Confidence 444566778889996 31 23332233 66788887642 334455667777777765554
No 36
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=35.01 E-value=25 Score=30.13 Aligned_cols=11 Identities=27% Similarity=0.522 Sum_probs=4.9
Q ss_pred hcccCceeEeeh
Q 048098 32 ARRRRSIKICCC 43 (222)
Q Consensus 32 ~~~~~~~~c~~~ 43 (222)
.|.++ ++|++.
T Consensus 246 aRkkk-i~c~gI 256 (280)
T COG5074 246 ARKKK-IRCYGI 256 (280)
T ss_pred HHhcc-eehhhh
Confidence 34444 444443
No 37
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=33.90 E-value=34 Score=28.90 Aligned_cols=15 Identities=13% Similarity=0.301 Sum_probs=8.7
Q ss_pred HheeeEEeeecCCeE
Q 048098 57 IILIFTVFRVKNPKI 71 (222)
Q Consensus 57 lil~~lv~rPk~P~~ 71 (222)
+..||-++|||+...
T Consensus 176 a~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 176 AYYYFKFYKPKQEEK 190 (218)
T ss_pred eEEEEEEeccccccc
Confidence 344555777776543
No 38
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=33.06 E-value=30 Score=29.82 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=16.6
Q ss_pred CCceEEEEEEEEEEEeCCC-eEE
Q 048098 89 PKPGVNISLIADMSVKNPN-VAS 110 (222)
Q Consensus 89 ~~~~ln~~l~~~v~v~NPN-~~~ 110 (222)
++..+...=++++.++||| .+.
T Consensus 102 ~~l~~~S~rnvtvnarn~~g~v~ 124 (292)
T KOG3950|consen 102 SPLYLQSARNVTVNARNPNGKVT 124 (292)
T ss_pred CceEEEeccCeeEEccCCCCcee
Confidence 3456777777889999999 663
No 39
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=32.70 E-value=24 Score=25.08 Aligned_cols=13 Identities=23% Similarity=0.564 Sum_probs=9.1
Q ss_pred HheeeEEeeecCC
Q 048098 57 IILIFTVFRVKNP 69 (222)
Q Consensus 57 lil~~lv~rPk~P 69 (222)
+++||+.+||+.=
T Consensus 14 ~i~yf~~~rpqkK 26 (84)
T TIGR00739 14 LIFYFLIIRPQRK 26 (84)
T ss_pred HHHHHheechHHH
Confidence 4557778898743
No 40
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=32.23 E-value=92 Score=24.69 Aligned_cols=14 Identities=29% Similarity=0.275 Sum_probs=5.3
Q ss_pred eehHHHHHHHHHHH
Q 048098 41 CCCIAALLVILAIV 54 (222)
Q Consensus 41 ~~~~~~~lv~l~~i 54 (222)
++.++++++++++.
T Consensus 19 ~ii~l~~l~l~~~g 32 (162)
T PRK07021 19 WLIILILLLLAAAA 32 (162)
T ss_pred hHHHHHHHHHHHHH
Confidence 33333333334433
No 41
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=31.21 E-value=20 Score=27.06 Aligned_cols=11 Identities=27% Similarity=0.431 Sum_probs=7.2
Q ss_pred eeEEeeecCCe
Q 048098 60 IFTVFRVKNPK 70 (222)
Q Consensus 60 ~~lv~rPk~P~ 70 (222)
+|+.+||+.=+
T Consensus 16 ~yf~iRPQkKr 26 (113)
T PRK06531 16 IFFMQRQQKKQ 26 (113)
T ss_pred HHheechHHHH
Confidence 34579998653
No 42
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=31.01 E-value=15 Score=21.56 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHhee
Q 048098 45 AALLVILAIVILIILI 60 (222)
Q Consensus 45 ~~~lv~l~~i~~lil~ 60 (222)
++++.++++.+ |++|
T Consensus 9 l~vv~iLt~~I-LvFW 23 (34)
T PF08113_consen 9 LGVVMILTAFI-LVFW 23 (34)
T ss_dssp HHHHHHHHHHH-HHHH
T ss_pred eeeHHHHHHHH-HHHH
Confidence 34455555555 5544
No 43
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=30.99 E-value=21 Score=22.42 Aligned_cols=8 Identities=38% Similarity=0.924 Sum_probs=5.3
Q ss_pred eeEEeeecC
Q 048098 60 IFTVFRVKN 68 (222)
Q Consensus 60 ~~lv~rPk~ 68 (222)
+| +++|+.
T Consensus 27 ~w-~~~~~~ 34 (49)
T PF05545_consen 27 IW-AYRPRN 34 (49)
T ss_pred HH-HHcccc
Confidence 44 778884
No 44
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.91 E-value=49 Score=29.24 Aligned_cols=10 Identities=20% Similarity=0.129 Sum_probs=4.0
Q ss_pred eEeehHHHHH
Q 048098 39 KICCCIAALL 48 (222)
Q Consensus 39 ~c~~~~~~~l 48 (222)
+||+++++++
T Consensus 282 ~~~i~~L~l~ 291 (305)
T KOG0809|consen 282 MKVILMLTLL 291 (305)
T ss_pred eEehHHHHHH
Confidence 3344444333
No 45
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=30.08 E-value=38 Score=25.60 Aligned_cols=11 Identities=9% Similarity=0.093 Sum_probs=6.5
Q ss_pred CCCCCCCcCCCCC
Q 048098 5 KKAPGADHDRLSS 17 (222)
Q Consensus 5 ~~~~~~~~~~~~~ 17 (222)
|+-|+.. +.-+
T Consensus 32 nlcP~~s--Qhlf 42 (128)
T PF15145_consen 32 NLCPAGS--QHLF 42 (128)
T ss_pred cCCcccc--cCCC
Confidence 3667766 5555
No 46
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=30.04 E-value=25 Score=22.31 Aligned_cols=6 Identities=33% Similarity=0.512 Sum_probs=4.8
Q ss_pred EeeecC
Q 048098 63 VFRVKN 68 (222)
Q Consensus 63 v~rPk~ 68 (222)
+|+|+.
T Consensus 30 a~~p~~ 35 (48)
T cd01324 30 AFRPGR 35 (48)
T ss_pred HhCCCc
Confidence 789985
No 47
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=29.78 E-value=55 Score=25.46 Aligned_cols=20 Identities=15% Similarity=0.381 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHheeeEEeeec
Q 048098 47 LLVILAIVILIILIFTVFRVK 67 (222)
Q Consensus 47 ~lv~l~~i~~lil~~lv~rPk 67 (222)
++++++++. ...||++.++.
T Consensus 12 ~l~~l~~~g-~~~~~~~~~~~ 31 (142)
T PRK07718 12 ILIVIALIG-TAALVLVMGFS 31 (142)
T ss_pred HHHHHHHHH-HHHHhhhcccC
Confidence 333333333 33455666654
No 48
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=29.78 E-value=2.6e+02 Score=21.51 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=25.5
Q ss_pred EEEEEEEEEEeCCCeEEEEECCCeEEEEEECCeEEee
Q 048098 94 NISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGE 130 (222)
Q Consensus 94 n~~l~~~v~v~NPN~~~i~Y~~~~~~~v~Y~g~~lg~ 130 (222)
+-++.+..+++|-.+..+..=... +.+..+++..++
T Consensus 61 ~~~~~v~g~V~N~g~~~i~~c~i~-~~l~~~~~~~~n 96 (149)
T PF09624_consen 61 SESFYVDGTVTNTGKFTIKKCKIT-VKLYNDKQVSGN 96 (149)
T ss_pred ccEEEEEEEEEECCCCEeeEEEEE-EEEEeCCCccCc
Confidence 445566778899998888776677 888776554444
No 49
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=29.73 E-value=2.4e+02 Score=21.06 Aligned_cols=62 Identities=10% Similarity=0.072 Sum_probs=34.5
Q ss_pred EEeeeEcCCceeecCceEE-EEEEEEEeeecccCCccccccc-cCCeEEEEEEEEEEEEEEEeEEEeE
Q 048098 127 LVGEARGPPGLVRAWRTLR-MNLTVDLITDRAMSSPNLSADI-ESGILVLDSYTRVGGRANILNLFKR 192 (222)
Q Consensus 127 ~lg~~~vp~f~q~~~~~~~-v~~~v~~~~~~l~~~~~l~~d~-~~G~v~l~~~~~v~~rv~vlg~~~~ 192 (222)
++|...+|+....+.++.. ++.++.+.....+ .+|.+++ ....+.+.++++. +++++++...
T Consensus 2 ~f~~~~lP~~~~~~~~~~~~~~~~l~i~d~~~f--~~f~~~~~~~~~~~l~l~g~~--~~~~g~l~~~ 65 (125)
T PF12505_consen 2 PFATLDLPQIKIKGNGTISIIDQTLTITDQDAF--TQFVTALLFNEEVTLTLRGKT--DTHLGGLPFS 65 (125)
T ss_pred ceEEEECCCEEecCCceEEEeeeeEEecCHHHH--HHHHHHHHhCCcEEEEEEEee--eEEEccEEEE
Confidence 5788889998883333322 2233332221111 3555555 4566888877773 6777776434
No 50
>PF15018 InaF-motif: TRP-interacting helix
Probab=29.51 E-value=50 Score=20.02 Aligned_cols=29 Identities=17% Similarity=0.426 Sum_probs=13.9
Q ss_pred CceeEeehHH-HHHHHHHHHHHHheeeEEee
Q 048098 36 RSIKICCCIA-ALLVILAIVILIILIFTVFR 65 (222)
Q Consensus 36 ~~~~c~~~~~-~~lv~l~~i~~lil~~lv~r 65 (222)
+..|++-.++ ++-+-++++. |.++|..+|
T Consensus 3 k~~R~~tV~~Yl~~VSl~Ai~-LsiYY~f~W 32 (38)
T PF15018_consen 3 KWVRVLTVVAYLFSVSLAAIV-LSIYYIFFW 32 (38)
T ss_pred eEEeeHHHHHHHHHHHHHHHH-HHHHHheee
Confidence 4555554332 2333344444 555666655
No 51
>KOG3927 consensus Na+/K+ ATPase, beta subunit [Inorganic ion transport and metabolism]
Probab=29.49 E-value=24 Score=31.28 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=32.4
Q ss_pred CCCCCCCchhhcccchhh------hcccCceeEeehHHHHHHHHHHHHH--HheeeEEeeecCCeEEEEe
Q 048098 14 RLSSGGDDENIMASWAAK------ARRRRSIKICCCIAALLVILAIVIL--IILIFTVFRVKNPKIRLNN 75 (222)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~------~~~~~~~~c~~~~~~~lv~l~~i~~--lil~~lv~rPk~P~~~v~s 75 (222)
.+|++-++|...--|-+. |..+++.+..++-+++-++|+++++ +.+++.-+-|+.|++. ++
T Consensus 15 ~~~~~~~~~~~~~~~n~~~~~~~GRT~~sW~~IllfYivFY~~la~lf~~~~~~~~~tidp~~P~~~-~~ 83 (300)
T KOG3927|consen 15 ELRREKPEEWKEFLYNPETGTFLGRTGSSWAKILLFYIVFYGVLAALFAGCMWFMLQTIDPKVPKYK-DS 83 (300)
T ss_pred ccccccchhhHHheeCcccCeEECcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-cc
Confidence 567766666666333221 4455555554444444334443331 2223345679999999 55
No 52
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.23 E-value=39 Score=26.89 Aligned_cols=31 Identities=10% Similarity=0.308 Sum_probs=13.1
Q ss_pred CceeEeehHHHHHHHHHHHHHHheeeEEeeec
Q 048098 36 RSIKICCCIAALLVILAIVILIILIFTVFRVK 67 (222)
Q Consensus 36 ~~~~c~~~~~~~lv~l~~i~~lil~~lv~rPk 67 (222)
+.+..++.++++++++.+.+ +..+|....|.
T Consensus 4 k~~~~i~ii~viflai~~s~-~~~~~~s~~P~ 34 (161)
T COG5353 4 KHLIIIIIILVIFLAIILSI-ALFFWKSMKPY 34 (161)
T ss_pred eEeeeehhHHHHHHHHHHHH-HHHHhHhcCcc
Confidence 44444444333333333333 33355555554
No 53
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=28.57 E-value=68 Score=21.82 Aligned_cols=16 Identities=6% Similarity=0.102 Sum_probs=10.5
Q ss_pred HHHHHHHheeeEEeeec
Q 048098 51 LAIVILIILIFTVFRVK 67 (222)
Q Consensus 51 l~~i~~lil~~lv~rPk 67 (222)
+++.+ .+..|++.+|+
T Consensus 13 vaa~a-~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAA-GAATWVIVQPR 28 (66)
T ss_pred HHhhh-ceeEEEEECCC
Confidence 34444 45578888998
No 54
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=28.35 E-value=92 Score=26.78 Aligned_cols=13 Identities=31% Similarity=0.406 Sum_probs=8.4
Q ss_pred EEEEECCeEEeee
Q 048098 119 TGLYHRGDLVGEA 131 (222)
Q Consensus 119 ~~v~Y~g~~lg~~ 131 (222)
..|.|+|.++|..
T Consensus 49 ~~V~~~Gv~VG~V 61 (291)
T TIGR00996 49 SKVRVRGVPVGKV 61 (291)
T ss_pred CceEEcceEEEEE
Confidence 4456777777754
No 55
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=26.87 E-value=1.4e+02 Score=22.27 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=26.5
Q ss_pred CCCeEEEEECCCeEEEEEECCeEEeeeEcCCceeecCc
Q 048098 105 NPNVASFKYGDTIITGLYHRGDLVGEARGPPGLVRAWR 142 (222)
Q Consensus 105 NPN~~~i~Y~~~~~~~v~Y~g~~lg~~~vp~f~q~~~~ 142 (222)
|||++-++|+++.-+++.|.|..+--+.-..+.+.--+
T Consensus 40 ~pNYvf~~FEnG~tvsv~~~gs~~kI~~~Dd~r~RDLg 77 (121)
T PF06919_consen 40 TPNYVFMRFENGITVSVTYNGSIFKIGLDDDHRERDLG 77 (121)
T ss_pred CCCEEEEEecCCCEEEEEecCcEEEEEecCchhhcccC
Confidence 99999999976643999999876555554555544333
No 56
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=26.18 E-value=29 Score=27.84 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=13.0
Q ss_pred CCCCchhhccc--chhhhc---ccCceeEee
Q 048098 17 SGGDDENIMAS--WAAKAR---RRRSIKICC 42 (222)
Q Consensus 17 ~~~~~~~~~~~--~~~~~~---~~~~~~c~~ 42 (222)
+|-|.|++.-+ -++-+| .+|++.+|+
T Consensus 6 f~~dse~~~n~~y~as~~r~k~~~R~i~l~~ 36 (161)
T PHA02673 6 FDNDSEAANNANYVASVKRQKAIRRYIKLFF 36 (161)
T ss_pred ccCchhhccCcchhhHHHHHHHHHHHHHHHH
Confidence 35577776632 233233 455555554
No 57
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=25.61 E-value=29 Score=25.86 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=8.9
Q ss_pred HheeeEEeeecCC
Q 048098 57 IILIFTVFRVKNP 69 (222)
Q Consensus 57 lil~~lv~rPk~P 69 (222)
+++||+.+||+.=
T Consensus 29 ~i~yf~~~RpqkK 41 (106)
T PRK05585 29 AIFYFLIIRPQQK 41 (106)
T ss_pred HHHHHHhccHHHH
Confidence 4557778898753
No 58
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=25.41 E-value=34 Score=34.44 Aligned_cols=23 Identities=30% Similarity=0.389 Sum_probs=9.8
Q ss_pred CceeEeehHHHHHHHHHHHHHHh
Q 048098 36 RSIKICCCIAALLVILAIVILII 58 (222)
Q Consensus 36 ~~~~c~~~~~~~lv~l~~i~~li 58 (222)
+|.|+|+.++++++.+++++|++
T Consensus 136 ~c~R~~l~~~L~~~~~~il~g~i 158 (806)
T PF05478_consen 136 ACRRGCLGILLLLLTLIILFGVI 158 (806)
T ss_pred ccchHHHHHHHHHHHHHHHHHHH
Confidence 34455554444443333333333
No 59
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=25.29 E-value=80 Score=25.66 Aligned_cols=17 Identities=24% Similarity=0.012 Sum_probs=9.7
Q ss_pred eCCC-eEEEEECCCeEEEEEECC
Q 048098 104 KNPN-VASFKYGDTIITGLYHRG 125 (222)
Q Consensus 104 ~NPN-~~~i~Y~~~~~~~v~Y~g 125 (222)
-|=| |.-|-| +.+.|.+
T Consensus 78 fnWNtKq~Fvy-----v~A~Y~t 95 (175)
T PF04573_consen 78 FNWNTKQLFVY-----VTAEYET 95 (175)
T ss_pred eeeeeeEEEEE-----EEEEECC
Confidence 3456 555555 5566754
No 60
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=24.86 E-value=39 Score=27.63 Aligned_cols=7 Identities=14% Similarity=0.240 Sum_probs=2.8
Q ss_pred EeeecCC
Q 048098 63 VFRVKNP 69 (222)
Q Consensus 63 v~rPk~P 69 (222)
.+....+
T Consensus 41 ~~~~~~~ 47 (182)
T PRK08455 41 LMGSKEE 47 (182)
T ss_pred HhcCCCc
Confidence 3444333
No 61
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=23.76 E-value=3.7e+02 Score=23.28 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=26.3
Q ss_pred EEEEEEeCCCeEEEEECCCeEEEEEECCeEEeeeEcCC
Q 048098 98 IADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGPP 135 (222)
Q Consensus 98 ~~~v~v~NPN~~~i~Y~~~~~~~v~Y~g~~lg~~~vp~ 135 (222)
-+..++.|+. ++..-.+. +.++.+|..+|.+.++.
T Consensus 169 ~l~a~~~n~~--~~~L~~G~-~~v~~dg~~vG~~~l~~ 203 (317)
T PF13598_consen 169 YLVARFKNTS--GLPLLPGP-VSVYRDGTFVGESRLPH 203 (317)
T ss_pred EEEEEEECCC--CCcccCCc-EEEEECCEEEEeeecCC
Confidence 3445566764 44455788 99999999999999876
No 62
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=23.43 E-value=30 Score=31.72 Aligned_cols=31 Identities=13% Similarity=0.314 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHheeeEEeeec-CCeE-EEEeEEEe
Q 048098 47 LLVILAIVILIILIFTVFRVK-NPKI-RLNNWTIT 79 (222)
Q Consensus 47 ~lv~l~~i~~lil~~lv~rPk-~P~~-~v~s~~v~ 79 (222)
+++++++++++++ ..-+|= .-.+ .|+++-.+
T Consensus 312 ~lL~ig~~~gFv~--AttKpL~~v~v~~I~NVlaS 344 (387)
T PF12751_consen 312 LLLVIGFAIGFVF--ATTKPLTDVQVVSIQNVLAS 344 (387)
T ss_pred HHHHHHHHHHhhh--hcCcccccceEEEeeeeeec
Confidence 4445555553443 356775 3333 56666655
No 63
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=22.97 E-value=2.7e+02 Score=19.47 Aligned_cols=53 Identities=8% Similarity=0.196 Sum_probs=25.3
Q ss_pred EEEEEEEEEeCCCeEEEEECCCeEEEEEECCeEEeeeEcCCceeecCceEEEEEEEE
Q 048098 95 ISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGPPGLVRAWRTLRMNLTVD 151 (222)
Q Consensus 95 ~~l~~~v~v~NPN~~~i~Y~~~~~~~v~Y~g~~lg~~~vp~f~q~~~~~~~v~~~v~ 151 (222)
-.....++++|......+|.=.. -. ..+..+ ...-+.+...++.+..+.+++.
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~-~~--~~~~~~-~v~~~~g~l~PG~~~~~~V~~~ 72 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQ-PE--SLSSFF-SVEPPSGFLAPGESVELEVTFS 72 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEe-CC--cCCCCE-EEECCCCEECCCCEEEEEEEEE
Confidence 34455677888874443332000 00 001111 2223455677777777766655
No 64
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=22.77 E-value=79 Score=24.52 Aligned_cols=10 Identities=10% Similarity=0.301 Sum_probs=6.9
Q ss_pred eeeEEeeecC
Q 048098 59 LIFTVFRVKN 68 (222)
Q Consensus 59 l~~lv~rPk~ 68 (222)
++|+.+|||.
T Consensus 121 ~~~i~~kpR~ 130 (139)
T PF04881_consen 121 HLLIKIKPRN 130 (139)
T ss_pred hhheeecccc
Confidence 3557888875
No 65
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=21.92 E-value=30 Score=26.22 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=0.0
Q ss_pred ceeEeehHHHHHHHHHHHHHHheeeEEeeecC
Q 048098 37 SIKICCCIAALLVILAIVILIILIFTVFRVKN 68 (222)
Q Consensus 37 ~~~c~~~~~~~lv~l~~i~~lil~~lv~rPk~ 68 (222)
..+..++.+++.++|++-+ +.+| ++|.-+.
T Consensus 31 a~~vagltvLa~LLiAGQa-~TaY-fv~~Qk~ 60 (114)
T PF09307_consen 31 ALKVAGLTVLACLLIAGQA-VTAY-FVFQQKG 60 (114)
T ss_dssp --------------------------------
T ss_pred hhHHHHHHHHHHHHHHhHH-HHHH-HHHHhHh
Confidence 3333344333334444444 4444 4666543
No 66
>PF10830 DUF2553: Protein of unknown function (DUF2553); InterPro: IPR020140 This entry contains proteins with no known function.
Probab=20.85 E-value=2e+02 Score=20.18 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=23.3
Q ss_pred CCeEEEEECCCeEEEEEECCeEEeeeEcCC
Q 048098 106 PNVASFKYGDTIITGLYHRGDLVGEARGPP 135 (222)
Q Consensus 106 PN~~~i~Y~~~~~~~v~Y~g~~lg~~~vp~ 135 (222)
.|++.-+|.+.. ..+|+++..||...++.
T Consensus 7 Td~V~gkf~ng~-l~LY~~~e~IG~~~~~~ 35 (76)
T PF10830_consen 7 TDKVTGKFKNGG-LELYHDNEMIGEIYMTE 35 (76)
T ss_pred ecceEEEecCCc-EEEEeccceeeeEccCC
Confidence 356667778888 99999999999977765
Done!