Query 048098
Match_columns 222
No_of_seqs 127 out of 694
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 10:34:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048098.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048098hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.7 6.3E-08 2.2E-12 77.7 9.5 102 67-181 43-146 (174)
2 1xo8_A AT1G01470; structural g 98.4 4.3E-08 1.5E-12 76.9 0.7 102 67-181 20-123 (151)
3 3but_A Uncharacterized protein 98.0 5.5E-05 1.9E-09 58.1 10.4 90 94-188 17-108 (136)
4 3hd7_B Syntaxin-1A; membrane p 41.0 3.9 0.00013 29.5 -0.9 8 52-59 97-104 (109)
5 2l6w_A Beta-type platelet-deri 44.5 6.7 0.00023 23.0 0.0 11 62-72 29-39 (39)
6 2rdd_B UPF0092 membrane protei 37.7 3.3 0.00011 23.9 -1.4 11 57-67 14-24 (37)
7 3j1r_A Archaeal adhesion filam 31.2 8.4 0.00029 20.4 -0.3 10 46-55 8-17 (26)
8 3qde_A Cellobiose phosphorylas 22.7 1.6E+02 0.0054 28.3 6.6 58 62-137 742-799 (811)
9 3me0_B PAPG protein; immunoglo 22.3 2.3E+02 0.0078 20.8 5.9 84 64-150 9-105 (128)
10 3p5s_A CD38 molecule; cyclic A 20.4 21 0.00073 30.0 0.0 6 63-68 32-37 (278)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.71 E-value=6.3e-08 Score=77.65 Aligned_cols=102 Identities=16% Similarity=0.118 Sum_probs=80.2
Q ss_pred cCCeEEEEeEEEeeEEeecCCCCCceEEEEEEEEEEEeCCCeEEEEECCCeEEEEEECCeEEeeeEcCC-ceeecCceEE
Q 048098 67 KNPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGPP-GLVRAWRTLR 145 (222)
Q Consensus 67 k~P~~~v~s~~v~~f~~~~~~~~~~~ln~~l~~~v~v~NPN~~~i~Y~~~~~~~v~Y~g~~lg~~~vp~-f~q~~~~~~~ 145 (222)
++|++++.++++.+++.. ..++.+.++++|||-+.+.+...+ ..+.-+|..++++..+. +.+++++++.
T Consensus 43 ~~PeV~v~~v~~~~~~l~---------~~~~~l~LrV~NPN~~pLpi~gi~-Y~L~vnG~~lasG~s~~~~tIpa~g~~~ 112 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRD---------GVDYHAKVSVKNPYSQSIPICQIS-YILKSATRTIASGTIPDPGSLVGSGTTV 112 (174)
T ss_dssp CCCEEEEEEEEEEEECSS---------SEEEEEEEEEEECSSSCCBCCSEE-EEEEESSSCEEEEEESCCCBCCSSEEEE
T ss_pred CCCEEEEEEeEEeccccc---------eEEEEEEEEEECCCCCCccccceE-EEEEECCEEEEEEecCCCceECCCCcEE
Confidence 789999999999877654 366778899999999999999999 89999999999999875 8999999999
Q ss_pred EEEEEEEeeecccCCcccccccc-CCeEEEEEEEEEE
Q 048098 146 MNLTVDLITDRAMSSPNLSADIE-SGILVLDSYTRVG 181 (222)
Q Consensus 146 v~~~v~~~~~~l~~~~~l~~d~~-~G~v~l~~~~~v~ 181 (222)
+.+++.+....+. .+.+++. .+.++.++++++.
T Consensus 113 v~Vpv~v~~~~l~---~~~~~l~~~~~i~Y~L~g~L~ 146 (174)
T 1yyc_A 113 LDVPVKVAYSIAV---SLMKDMCTDWDIDYQLDIGLT 146 (174)
T ss_dssp EEEEEEESHHHHH---HTCCCCCSSEEECEEEEEEEE
T ss_pred EEEEEEEEHHHHH---HHHHhcCCCCccceEEEEEEE
Confidence 9999988764332 3334443 3466666554443
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.40 E-value=4.3e-08 Score=76.93 Aligned_cols=102 Identities=17% Similarity=0.216 Sum_probs=76.8
Q ss_pred cCCeEEEEeEEEeeEEeecCCCCCceEEEEEEEEEEEeCCCeEEEEECCCeEEEEEECCeEEeeeEcC-CceeecCceEE
Q 048098 67 KNPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGP-PGLVRAWRTLR 145 (222)
Q Consensus 67 k~P~~~v~s~~v~~f~~~~~~~~~~~ln~~l~~~v~v~NPN~~~i~Y~~~~~~~v~Y~g~~lg~~~vp-~f~q~~~~~~~ 145 (222)
++|++++.++++.+++.. ..++.+.++++|||-+.+.+...+ ..+.-+|..++++..+ ++..++++++.
T Consensus 20 ~~P~v~v~~v~~~~~~~~---------~~~~~~~l~V~NPN~~~lpi~gi~-y~l~vng~~lasG~~~~~~~ipa~g~~~ 89 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNRD---------SVEYLAKVSVTNPYSHSIPICEIS-FTFHSAGREIGKGKIPDPGSLKAKDMTA 89 (151)
T ss_dssp CSCCCBCSEEEECCCTTT---------EECEEEEEEEECSSSSCCCCEEEE-EEEESSSSCEEEEEEEECCCCSSSSEEE
T ss_pred CCCEEEEEEeEEeccCcc---------eeEEEEEEEEECCCCCCcccccEE-EEEEECCEEEEEEecCCCcEECCCCcEE
Confidence 679988888887655433 457788999999999888888888 7887899999999986 58899999999
Q ss_pred EEEEEEEeeecccCCccccccc-cCCeEEEEEEEEEE
Q 048098 146 MNLTVDLITDRAMSSPNLSADI-ESGILVLDSYTRVG 181 (222)
Q Consensus 146 v~~~v~~~~~~l~~~~~l~~d~-~~G~v~l~~~~~v~ 181 (222)
+.+++.+....+ ..+.+++ ..+.++.++++++.
T Consensus 90 v~vpv~v~~~~l---~~~~~~l~~~~~i~Y~l~g~l~ 123 (151)
T 1xo8_A 90 LDIPVVVPYSIL---FNLARDVGVDWDIDYELQIGLT 123 (151)
T ss_dssp EEECCCEEHHHH---HHHHHHHHHHSEEEEEEEEEEE
T ss_pred EEEEEEEEHHHH---HHHHHhcccCCcccEEEEEEEE
Confidence 999888775433 2334444 34577766544443
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=98.00 E-value=5.5e-05 Score=58.11 Aligned_cols=90 Identities=13% Similarity=0.120 Sum_probs=66.0
Q ss_pred EEEEEEEEEEeCCCeEEEEECCCeEEEEEECCeEEeeeE-cCCceeecCceEEEEEEEEEeeecccCCccccccccCC-e
Q 048098 94 NISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEAR-GPPGLVRAWRTLRMNLTVDLITDRAMSSPNLSADIESG-I 171 (222)
Q Consensus 94 n~~l~~~v~v~NPN~~~i~Y~~~~~~~v~Y~g~~lg~~~-vp~f~q~~~~~~~v~~~v~~~~~~l~~~~~l~~d~~~G-~ 171 (222)
...|.+.++++|||-+.+.+.... ..++.+|..+|++. ...+.+++.+++.+.+++.++..++.. .+.+.+.+| .
T Consensus 17 ~t~~~~~l~V~NPN~~~l~i~gl~-y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~--~~~~hi~nge~ 93 (136)
T 3but_A 17 QTEIVALAKVRNEDVVPIVVSGYH-YTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLRE--WWVTHIANGEK 93 (136)
T ss_dssp EEEEEEEEEEECCSSSCEEEEEEE-EEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTT--HHHHHHHTTSE
T ss_pred EEEEEEEEEEeCCCCcceeeeceE-EEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHH--HHHHHhhcCCc
Confidence 566788899999999999998888 99999999999998 467899999999999998888665542 344444445 2
Q ss_pred EEEEEEEEEEEEEEEeE
Q 048098 172 LVLDSYTRVGGRANILN 188 (222)
Q Consensus 172 v~l~~~~~v~~rv~vlg 188 (222)
-+++ .++..++.++|
T Consensus 94 s~l~--i~~~~~l~v~g 108 (136)
T 3but_A 94 TKIR--VAIKPTIEIGG 108 (136)
T ss_dssp EEEE--EEEEEEEECC-
T ss_pred eEEE--EEEEEEEEeCC
Confidence 2333 33444555554
No 4
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=40.95 E-value=3.9 Score=29.45 Aligned_cols=8 Identities=25% Similarity=0.451 Sum_probs=3.3
Q ss_pred HHHHHHhe
Q 048098 52 AIVILIIL 59 (222)
Q Consensus 52 ~~i~~lil 59 (222)
++++++++
T Consensus 97 ~~i~~~~~ 104 (109)
T 3hd7_B 97 GIIIASTI 104 (109)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 34332444
No 5
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=44.47 E-value=6.7 Score=23.01 Aligned_cols=11 Identities=18% Similarity=0.422 Sum_probs=7.9
Q ss_pred EEeeecCCeEE
Q 048098 62 TVFRVKNPKIR 72 (222)
Q Consensus 62 lv~rPk~P~~~ 72 (222)
.+.|-|.|+|+
T Consensus 29 i~~w~qKPrYe 39 (39)
T 2l6w_A 29 IMLWQKKPRYE 39 (39)
Confidence 46678888874
No 6
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=37.74 E-value=3.3 Score=23.94 Aligned_cols=11 Identities=27% Similarity=0.727 Sum_probs=7.5
Q ss_pred HheeeEEeeec
Q 048098 57 IILIFTVFRVK 67 (222)
Q Consensus 57 lil~~lv~rPk 67 (222)
++.||+.+||+
T Consensus 14 ~ifYFl~iRPQ 24 (37)
T 2rdd_B 14 LIFYFMILRPQ 24 (37)
T ss_dssp HHHHHHTHHHH
T ss_pred HHHHHHHhhhH
Confidence 44567778885
No 7
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=31.18 E-value=8.4 Score=20.38 Aligned_cols=10 Identities=30% Similarity=0.677 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 048098 46 ALLVILAIVI 55 (222)
Q Consensus 46 ~~lv~l~~i~ 55 (222)
++++++++++
T Consensus 8 ~lLIviav~a 17 (26)
T 3j1r_A 8 LLLILIAVAA 17 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3445555555
No 8
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=22.69 E-value=1.6e+02 Score=28.31 Aligned_cols=58 Identities=19% Similarity=0.183 Sum_probs=33.7
Q ss_pred EEeeecCCeEEEEeEEEeeEEeecCCCCCceEEEEEEEEEEEeCCCeEEEEECCCeEEEEEECCeEEeeeEcCCce
Q 048098 62 TVFRVKNPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGPPGL 137 (222)
Q Consensus 62 lv~rPk~P~~~v~s~~v~~f~~~~~~~~~~~ln~~l~~~v~v~NPN~~~i~Y~~~~~~~v~Y~g~~lg~~~vp~f~ 137 (222)
+.+.|..|.. .+.++++ +.+. +. .+.|+++||+... ... ..+.-+|..+....+|...
T Consensus 742 L~i~P~LP~~-w~~~~~~-~~~~---------g~--~~~I~v~~~~~~~----~~~-~~~~~dg~~~~~~~i~~~~ 799 (811)
T 3qde_A 742 LKIDPCIPKA-WDGYKVT-RYFR---------GS--TYEITVKNPNHVS----KGV-AKITVDGNEISGNILPVFN 799 (811)
T ss_dssp EEECCBCCTT-CCEEEEE-EEET---------TE--EEEEEEECTTCCS----BCE-EEEEETTEECSSSBCCCCC
T ss_pred EEEeCcCCcc-cCcEEEE-EEEC---------CE--EEEEEEEccCCCC----CCc-EEEEECCEECcCCeeeecC
Confidence 3456666654 5555554 2333 11 2356778998532 233 6677789888666677544
No 9
>3me0_B PAPG protein; immunoglobulin pilin chaperone, chaperone, fimbrium, immunog domain; HET: MSE; 2.03A {Escherichia coli} PDB: 2wmp_B
Probab=22.30 E-value=2.3e+02 Score=20.85 Aligned_cols=84 Identities=12% Similarity=0.068 Sum_probs=40.2
Q ss_pred eeecCCeEEEEeEEEeeEEeecCCCCCceEEEE----EEEEEEE-eC--C-----CeEEEEECC-CeEEEEEECCeEEee
Q 048098 64 FRVKNPKIRLNNWTITKLELVNGTIPKPGVNIS----LIADMSV-KN--P-----NVASFKYGD-TIITGLYHRGDLVGE 130 (222)
Q Consensus 64 ~rPk~P~~~v~s~~v~~f~~~~~~~~~~~ln~~----l~~~v~v-~N--P-----N~~~i~Y~~-~~~~~v~Y~g~~lg~ 130 (222)
.||..|.++++.=.++.=.+. |......++++ .++.|.+ .| | .++.+--++ .+ ..++-+|+..|+
T Consensus 9 ~~~~~~~l~IdHG~ls~~~a~-Gnt~~~~isV~Ct~p~~Vki~lt~~~~p~~~~~~~f~V~L~ngl~-S~l~lNG~~~~e 86 (128)
T 3me0_B 9 CRPSAQSLEIKHGDLSINSAN-NHYAAQTLSVSCDVPANIRFMLLRNTTPTYSHGKKFSVGLGHGWD-SIVSVNGVDTGE 86 (128)
T ss_dssp EEECCSCCEEECCCSSSSCCS-SCEEEEEEEEEESSCEEEEEEEEECSCCSSCCTTSCEEEEETTEE-EEEEETTBCSSE
T ss_pred cCCCCCceecccceechhhcC-CCEEeeEEEEEeCCCceEEEEEecCCcccccccCceEEecCCCeE-EEEEECCeeccc
Confidence 589999988887665432222 10000111111 1122222 32 1 233344433 34 667778998888
Q ss_pred eEcCCceeecCceEEEEEEE
Q 048098 131 ARGPPGLVRAWRTLRMNLTV 150 (222)
Q Consensus 131 ~~vp~f~q~~~~~~~v~~~v 150 (222)
..+ .|+.++..+.++...+
T Consensus 87 ~~~-~~~~~~s~tvtV~S~L 105 (128)
T 3me0_B 87 TTM-RWYKAGTQNLTIGSRL 105 (128)
T ss_dssp EEE-EESSSEEEEEEEEEEE
T ss_pred eeE-EEEecCCcEEEEEEEE
Confidence 888 4443333444444444
No 10
>3p5s_A CD38 molecule; cyclic ADP ribose, ECTO-ADP-ribosyl cyclase, glycosida hydrolase; HET: NAG AVU; 1.95A {Bos taurus}
Probab=20.44 E-value=21 Score=30.01 Aligned_cols=6 Identities=0% Similarity=-0.507 Sum_probs=0.0
Q ss_pred EeeecC
Q 048098 63 VFRVKN 68 (222)
Q Consensus 63 v~rPk~ 68 (222)
.++|++
T Consensus 32 ~~~~~~ 37 (278)
T 3p5s_A 32 YKWHYS 37 (278)
T ss_dssp ------
T ss_pred EeccCC
Confidence 445554
Done!