BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048100
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 20/103 (19%)
Query: 46 YTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQP 105
+TQ +EG +V+ V L L+ + L Q + G SPLH A R G +AVV LI +
Sbjct: 10 FTQCREGNAVA---VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-- 64
Query: 106 GQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL 148
+ + N +DT LH A G D+V+ LL
Sbjct: 65 ---------------INVMNRGDDTPLHLAASHGHRDIVQKLL 92
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 74 VNAKGDSPLHVAARYGHAAVVGALIEF 100
+N D+PLH+AA +GH +V L+++
Sbjct: 68 MNRGDDTPLHLAASHGHRDIVQKLLQY 94
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 20/103 (19%)
Query: 46 YTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQP 105
+TQ +EG +V+ V L L+ + L Q + G SPLH A R G +AVV LI +
Sbjct: 5 FTQCREGNAVA---VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-- 59
Query: 106 GQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL 148
+ + N +DT LH A G D+V+ LL
Sbjct: 60 ---------------INVMNRGDDTPLHLAASHGHRDIVQKLL 87
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 74 VNAKGDSPLHVAARYGHAAVVGALIEF 100
+N D+PLH+AA +GH +V L+++
Sbjct: 63 MNRGDDTPLHLAASHGHRDIVQKLLQY 89
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 19/76 (25%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
GD+PLH+AA YGH +V L++ + V +T Y T LH A
Sbjct: 80 GDTPLHLAALYGHLEIVEVLLKNG---------ADVNATDTYGF--------TPLHLAAD 122
Query: 138 SGSLDVVEILL--GAD 151
+G L++VE+LL GAD
Sbjct: 123 AGHLEIVEVLLKYGAD 138
Score = 32.7 bits (73), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 39/84 (46%), Gaps = 22/84 (26%)
Query: 73 QVNAKGDS---PLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEED 129
VNA+ DS PLH+AA GH +V L L+ G +G D
Sbjct: 39 DVNAEDDSGKTPLHLAAIKGHLEIVEVL-----------LKHGADVNAADKMG------D 81
Query: 130 TALHEAVQSGSLDVVEILL--GAD 151
T LH A G L++VE+LL GAD
Sbjct: 82 TPLHLAALYGHLEIVEVLLKNGAD 105
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTA 131
G +PLH+AA GH +V L+++ Q+ T + + + N ED A
Sbjct: 113 GFTPLHLAADAGHLEIVEVLLKYGADVNAQD----KFGKTAFDISIDNGNEDLA 162
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 17/93 (18%)
Query: 75 NAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVK---STTRYM----------- 120
+A+G + LH+AA+ GH VV L+ + + + G T Y
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133
Query: 121 ---LGMKNDEEDTALHEAVQSGSLDVVEILLGA 150
+ ++++EE+ LH A SG +D+ EILL A
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAA 166
Score = 29.6 bits (65), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 16/85 (18%)
Query: 80 SPLHVAARYGHAAVVGALIE-------FAEKQPGQELESGVKS---TTRYMLGM------ 123
SPLH AA GH + L++ +E Q +E+ + +Y++
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 124 KNDEEDTALHEAVQSGSLDVVEILL 148
K+ E T LH A + G +VV+ LL
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLL 97
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/14 (78%), Positives = 12/14 (85%)
Query: 74 VNAKGDSPLHVAAR 87
VN GDSPLH+AAR
Sbjct: 173 VNIHGDSPLHIAAR 186
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 24/96 (25%)
Query: 58 KFVELVLETCPSLLLQVNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVK 114
+ V+L+LE VNAK G +PLH+AAR GH VV L+E G ++ +
Sbjct: 49 EVVKLLLEAGAD----VNAKDKNGRTPLHLAARNGHLEVVKLLLE-----AGADVNA--- 96
Query: 115 STTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGA 150
K+ T LH A ++G L+VV++LL A
Sbjct: 97 ---------KDKNGRTPLHLAARNGHLEVVKLLLEA 123
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 19/76 (25%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
G +PLH+AAR GH VV L+E G ++ + K+ T LH A +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE-----AGADVNA------------KDKNGRTPLHLAAR 44
Query: 138 SGSLDVVEILL--GAD 151
+G L+VV++LL GAD
Sbjct: 45 NGHLEVVKLLLEAGAD 60
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 22/84 (26%)
Query: 73 QVNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEED 129
VNA+ G +PLH+AA +GH +V L L++G + LG+
Sbjct: 39 DVNARDFTGWTPLHLAAHFGHLEIVEVL-----------LKNGADVNAKDSLGV------ 81
Query: 130 TALHEAVQSGSLDVVEILL--GAD 151
T LH A + G L++VE+LL GAD
Sbjct: 82 TPLHLAARRGHLEIVEVLLKNGAD 105
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 26/99 (26%)
Query: 58 KFVELVLETCPSLLLQVNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVK 114
+ VE++L+ VNAK G +PLH+AAR GH +V L L++G
Sbjct: 61 EIVEVLLKNGAD----VNAKDSLGVTPLHLAARRGHLEIVEVL-----------LKNGAD 105
Query: 115 STTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL--GAD 151
G T LH A + G L++VE+LL GAD
Sbjct: 106 VNASDSHGF------TPLHLAAKRGHLEIVEVLLKNGAD 138
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 19/81 (23%)
Query: 77 KGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAV 136
KG +PLHVAA+YG V L+E + P ++G+ T LH AV
Sbjct: 145 KGFTPLHVAAKYGKVRVAELLLE-RDAHPNAAGKNGL----------------TPLHVAV 187
Query: 137 QSGSLDVVEILL--GADPAFP 155
+LD+V++LL G P P
Sbjct: 188 HHNNLDIVKLLLPRGGSPHSP 208
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 19/77 (24%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
G +PLHVA+ YG+ +V L++ ++ V + T+ LG + LH+A Q
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQH---------QADVNAKTK--LGY------SPLHQAAQ 353
Query: 138 SGSLDVVEILL--GADP 152
G D+V +LL GA P
Sbjct: 354 QGHTDIVTLLLKNGASP 370
Score = 33.5 bits (75), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 19/86 (22%)
Query: 75 NAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHE 134
N K ++PLH+AAR GH V L++ K + K ++ T LH
Sbjct: 44 NVKVETPLHMAARAGHTEVAKYLLQNKAK-----------------VNAKAKDDQTPLHC 86
Query: 135 AVQSGSLDVVEILL--GADPAFPYSA 158
A + G ++V++LL A+P +A
Sbjct: 87 AARIGHTNMVKLLLENNANPNLATTA 112
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 73 QVNAKG---DSPLHVAARYGHAAVVGALIE 99
+VNAK +PLH AAR GH +V L+E
Sbjct: 72 KVNAKAKDDQTPLHCAARIGHTNMVKLLLE 101
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 17/72 (23%)
Query: 77 KGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAV 136
+G +PLH+AA+ GHA +V L+ KQ L G KS G+ T LH
Sbjct: 244 QGVTPLHLAAQEGHAEMVALLL---SKQANGNL--GNKS------GL------TPLHLVA 286
Query: 137 QSGSLDVVEILL 148
Q G + V ++L+
Sbjct: 287 QEGHVPVADVLI 298
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 74 VNAK---GDSPLHVAARYGHAAVVGALIE 99
VNAK G SPLH AA+ GH +V L++
Sbjct: 337 VNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 19/76 (25%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
G +PLH+AAR GH VV L+E G ++ + K+ T LH A +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE-----AGADVNA------------KDKNGRTPLHLAAR 44
Query: 138 SGSLDVVEILL--GAD 151
+G L+VV++LL GAD
Sbjct: 45 NGHLEVVKLLLEAGAD 60
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 7/45 (15%)
Query: 58 KFVELVLETCPSLLLQVNAK---GDSPLHVAARYGHAAVVGALIE 99
+ V+L+LE VNAK G +PLH+AAR GH VV L+E
Sbjct: 49 EVVKLLLEAGAD----VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 22/84 (26%)
Query: 73 QVNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEED 129
VNA+ GD+PLH+AAR GH +V L L++G G
Sbjct: 39 DVNAEDTYGDTPLHLAARVGHLEIVEVL-----------LKNGADVNALDFSG------S 81
Query: 130 TALHEAVQSGSLDVVEILL--GAD 151
T LH A + G L++VE+LL GAD
Sbjct: 82 TPLHLAAKRGHLEIVEVLLKYGAD 105
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTA 131
G +PLH+AA GH +V L+++ Q+ T + + + N ED A
Sbjct: 113 GSTPLHLAADTGHLEIVEVLLKYGADVNAQD----KFGKTAFDISIDNGNEDLA 162
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 19/76 (25%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
G SPLH+AA+YGH + L L +GV R + + T LH A
Sbjct: 34 GTSPLHLAAQYGHFSTTEVL-----------LRAGVSRDARTKV------DRTPLHMAAS 76
Query: 138 SGSLDVVEILL--GAD 151
G ++VE+LL GAD
Sbjct: 77 EGHANIVEVLLKHGAD 92
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 19/74 (25%)
Query: 80 SPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSG 139
+PLH+AA GHA +V L L+ G + ML M TALH A +
Sbjct: 69 TPLHMAASEGHANIVEVL-----------LKHGADVNAKDMLKM------TALHWATEHN 111
Query: 140 SLDVVEILL--GAD 151
+VVE+L+ GAD
Sbjct: 112 HQEVVELLIKYGAD 125
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 19/76 (25%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
G +PLH+AA +GH +V L+ + G ++ + K+D T LH A
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLL-----KNGADVNA------------KDDNGITPLHLAAN 122
Query: 138 SGSLDVVEILL--GAD 151
G L++VE+LL GAD
Sbjct: 123 RGHLEIVEVLLKYGAD 138
Score = 33.5 bits (75), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 19/76 (25%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
G +PLH+AA +GH +V L L++G LG T LH A
Sbjct: 47 GWTPLHLAAYWGHLEIVEVL-----------LKNGADVNAYDTLG------STPLHLAAH 89
Query: 138 SGSLDVVEILL--GAD 151
G L++VE+LL GAD
Sbjct: 90 FGHLEIVEVLLKNGAD 105
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 11/77 (14%)
Query: 58 KFVELVLETCPSLLLQVNAKGD---SPLHVAARYGHAAVVGALIEFAEKQPGQELESGVK 114
+ VE++L+ VNAK D +PLH+AA GH +V L+++ Q+
Sbjct: 94 EIVEVLLKNGA----DVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQD----KF 145
Query: 115 STTRYMLGMKNDEEDTA 131
T + + + N ED A
Sbjct: 146 GKTAFDISINNGNEDLA 162
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 18/96 (18%)
Query: 75 NAKGDSPLHVAARYGHAAVVGALIE-----FAEKQPGQE-----LESGVKSTTRYMLGM- 123
++ G +PLH+AA GH VV L+ A+ G+ E+G K + +L
Sbjct: 34 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG 93
Query: 124 -----KNDEEDTALHEAVQSGSLDVVEILL--GADP 152
K+ + T LH A ++G +VV++LL GADP
Sbjct: 94 ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP 129
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 17/71 (23%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
G +PLH A +GH VV L++ + +TT Y + D+ LH+A +
Sbjct: 43 GWTPLHEACNHGHLKVVELLLQ----------HKALVNTTGY-------QNDSPLHDAAK 85
Query: 138 SGSLDVVEILL 148
+G +D+V++LL
Sbjct: 86 NGHVDIVKLLL 96
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 58 KFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFA 101
K VEL+L+ +L+ + DSPLH AA+ GH +V L+ +
Sbjct: 57 KVVELLLQH-KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG 99
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 26/99 (26%)
Query: 58 KFVELVLETCPSLLLQVNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVK 114
+ VE++L+ VNAK G +PLH+AAR GH +V L L++G
Sbjct: 49 EIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEVL-----------LKAGAD 93
Query: 115 STTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL--GAD 151
+ G T LH A + G L++VE+LL GAD
Sbjct: 94 VNAKDKDGY------TPLHLAAREGHLEIVEVLLKAGAD 126
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 22/84 (26%)
Query: 73 QVNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEED 129
VNAK G +PLH+AAR GH +V L L++G + G
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVL-----------LKAGADVNAKDKDGY------ 69
Query: 130 TALHEAVQSGSLDVVEILL--GAD 151
T LH A + G L++VE+LL GAD
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGAD 93
Score = 29.6 bits (65), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 13/78 (16%)
Query: 58 KFVELVLETCPSLLLQVNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVK 114
+ VE++L+ VNAK G +PLH+AAR GH +V L+ + G ++ + K
Sbjct: 82 EIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEVLL-----KAGADVNAQDK 132
Query: 115 -STTRYMLGMKNDEEDTA 131
T + L + N ED A
Sbjct: 133 FGKTPFDLAIDNGNEDIA 150
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 26/99 (26%)
Query: 58 KFVELVLETCPSLLLQVNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVK 114
+ VE++L+ VNAK G +PLH+AAR GH +V L+ + G ++ + K
Sbjct: 61 EIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEVLL-----KAGADVNA--K 109
Query: 115 STTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL--GAD 151
Y T LH A + G L++VE+LL GAD
Sbjct: 110 DKDGY----------TPLHLAAREGHLEIVEVLLKAGAD 138
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 22/84 (26%)
Query: 73 QVNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEED 129
VNAK G +PLH+AAR GH +V L+ + G ++ + K Y
Sbjct: 39 DVNAKDKDGYTPLHLAAREGHLEIVEVLL-----KAGADVNA--KDKDGY---------- 81
Query: 130 TALHEAVQSGSLDVVEILL--GAD 151
T LH A + G L++VE+LL GAD
Sbjct: 82 TPLHLAAREGHLEIVEVLLKAGAD 105
Score = 29.3 bits (64), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 24/93 (25%)
Query: 58 KFVELVLETCPSLLLQVNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVK 114
+ VE++L+ VNAK G +PLH+AAR GH +V L L++G
Sbjct: 94 EIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEVL-----------LKAGAD 138
Query: 115 STTRYMLGMKNDEEDTALHEAVQSGSLDVVEIL 147
+ G TA ++ +G+ D+ EIL
Sbjct: 139 VNAQDKFGK------TAFDISIDNGNEDLAEIL 165
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 26/99 (26%)
Query: 58 KFVELVLETCPSLLLQVNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVK 114
+ VE++L+ VNAK G +PLH+AAR GH +V L L++G
Sbjct: 49 EIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEVL-----------LKAGAD 93
Query: 115 STTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL--GAD 151
+ G T LH A + G L++VE+LL GAD
Sbjct: 94 VNAKDKDGY------TPLHLAAREGHLEIVEVLLKAGAD 126
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 22/84 (26%)
Query: 73 QVNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEED 129
VNAK G +PLH+AAR GH +V L L++G + G
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVL-----------LKAGADVNAKDKDGY------ 69
Query: 130 TALHEAVQSGSLDVVEILL--GAD 151
T LH A + G L++VE+LL GAD
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGAD 93
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 13/78 (16%)
Query: 58 KFVELVLETCPSLLLQVNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVK 114
+ VE++L+ VNAK G +PLH+AAR GH +V L+ + G ++ + K
Sbjct: 82 EIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEVLL-----KAGADVNAQDK 132
Query: 115 -STTRYMLGMKNDEEDTA 131
T + L ++ ED A
Sbjct: 133 FGKTPFDLAIREGHEDIA 150
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 19/76 (25%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
G +PLH+AA +GH +V L L++G LG+ T LH A
Sbjct: 47 GWTPLHLAAYFGHLEIVEVL-----------LKNGADVNADDSLGV------TPLHLAAD 89
Query: 138 SGSLDVVEILL--GAD 151
G L+VVE+LL GAD
Sbjct: 90 RGHLEVVEVLLKNGAD 105
Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 26/99 (26%)
Query: 58 KFVELVLETCPSLLLQVNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVK 114
+ VE++L+ VNA G +PLH+AA GH VV L L++G
Sbjct: 61 EIVEVLLKNGAD----VNADDSLGVTPLHLAADRGHLEVVEVL-----------LKNGAD 105
Query: 115 STTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL--GAD 151
G T LH A G L++VE+LL GAD
Sbjct: 106 VNANDHNGF------TPLHLAANIGHLEIVEVLLKHGAD 138
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 13/86 (15%)
Query: 77 KGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAV 136
+G++PLH+A G A VG L + L S +K+T N T LH A
Sbjct: 74 RGNTPLHLACEQGCLASVGVLTQSCTT---PHLHSILKAT--------NYNGHTCLHLAS 122
Query: 137 QSGSLDVVEIL--LGADPAFPYSANG 160
G L +VE+L LGAD NG
Sbjct: 123 IHGYLGIVELLVSLGADVNAQEPCNG 148
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 15/77 (19%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
GDS LH+A I EK E+ VK + L +N+ + T LH AV
Sbjct: 5 GDSFLHLA------------IIHEEKALTMEVIRQVKGDLAF-LNFQNNLQQTPLHLAVI 51
Query: 138 SGSLDVVEILLGA--DP 152
+ ++ E LLGA DP
Sbjct: 52 TNQPEIAEALLGAGCDP 68
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 22/84 (26%)
Query: 73 QVNAKGD---SPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEED 129
VNA D +PLH+AA+ GH +V L L+ G R + G
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVL-----------LKHGADVNARDIWGR------ 81
Query: 130 TALHEAVQSGSLDVVEILL--GAD 151
T LH A G L++VE+LL GAD
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGAD 105
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 73 QVNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEED 129
VNA+ G +PLH+AA GH +V L+E+ Q+ T + + + N ED
Sbjct: 72 DVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD----KFGKTAFDISIDNGNED 127
Query: 130 TA 131
A
Sbjct: 128 LA 129
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 22/84 (26%)
Query: 73 QVNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEED 129
VNA+ G +PLH+AA GH +V L+++ + V + Y L
Sbjct: 72 DVNARDTDGWTPLHLAADNGHLEIVEVLLKYG---------ADVNAQDAYGL-------- 114
Query: 130 TALHEAVQSGSLDVVEILL--GAD 151
T LH A G L++VE+LL GAD
Sbjct: 115 TPLHLAADRGHLEIVEVLLKHGAD 138
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 19/77 (24%)
Query: 77 KGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAV 136
+G +PLH+AA GH +V L L+ G R G T LH A
Sbjct: 46 QGSTPLHLAAWIGHPEIVEVL-----------LKHGADVNARDTDGW------TPLHLAA 88
Query: 137 QSGSLDVVEILL--GAD 151
+G L++VE+LL GAD
Sbjct: 89 DNGHLEIVEVLLKYGAD 105
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 19/76 (25%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
G +PLH+AA+ GH +V L+++ + V + Y T LH A
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYG---------ADVNAWDNYGA--------TPLHLAAD 89
Query: 138 SGSLDVVEILL--GAD 151
+G L++VE+LL GAD
Sbjct: 90 NGHLEIVEVLLKHGAD 105
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 73 QVNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEED 129
VNAK G +PLH+AA GH +V L+++ Q+ T + + + N ED
Sbjct: 105 DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQD----KFGKTAFDISIDNGNED 160
Query: 130 TA 131
A
Sbjct: 161 LA 162
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 19/79 (24%)
Query: 75 NAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHE 134
+A G +PLH+AA YGH +V L L+ G ++G T LH
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVL-----------LKHGADVNAIDIMG------STPLHL 86
Query: 135 AVQSGSLDVVEILL--GAD 151
A G L++VE+LL GAD
Sbjct: 87 AALIGHLEIVEVLLKHGAD 105
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 74 VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTA 131
V+ GD+PLH+AA GH +V L++ Q+ T + + + N ED A
Sbjct: 109 VDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQD----KFGKTAFDISIDNGNEDLA 162
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 13/86 (15%)
Query: 77 KGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAV 136
+G++PLH+A G A VG L + L S +K+T N T LH A
Sbjct: 77 RGNTPLHLACEQGCLASVGVLTQSCTT---PHLHSILKAT--------NYNGHTCLHLAS 125
Query: 137 QSGSLDVVEIL--LGADPAFPYSANG 160
G L +VE+L LGAD NG
Sbjct: 126 IHGYLGIVELLVSLGADVNAQEPCNG 151
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 15/82 (18%)
Query: 73 QVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTAL 132
Q+ GDS LH+A I EK E+ VK + L +N+ + T L
Sbjct: 3 QLTEDGDSFLHLA------------IIHEEKALTMEVIRQVKGDLAF-LNFQNNLQQTPL 49
Query: 133 HEAVQSGSLDVVEILLGA--DP 152
H AV + ++ E LLGA DP
Sbjct: 50 HLAVITNQPEIAEALLGAGCDP 71
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 17/74 (22%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
G SPLHVAA +G A ++ L L+ G + G +N ++ LH A Q
Sbjct: 86 GSSPLHVAALHGRADLIPLL-----------LKHGANA------GARNADQAVPLHLACQ 128
Query: 138 SGSLDVVEILLGAD 151
G VV+ LL ++
Sbjct: 129 QGHFQVVKCLLDSN 142
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 16/90 (17%)
Query: 75 NAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELE---------SGVKSTTRYML---- 121
NA PLH+A + GH VV L++ K ++L SG +L
Sbjct: 116 NADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHG 175
Query: 122 ---GMKNDEEDTALHEAVQSGSLDVVEILL 148
N++ +TALHEAV + VVE+LL
Sbjct: 176 ASINASNNKGNTALHEAVIEKHVFVVELLL 205
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 18/96 (18%)
Query: 75 NAKGDSPLHVAARYGHAAVVGALIE-----FAEKQPGQE-----LESGVKSTTRYML--- 121
++ G +PLH AA GH +V L+ A+ G+ E+G K + +L
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG 93
Query: 122 ---GMKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
K+ + T LH A ++G ++V++LL GADP
Sbjct: 94 ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP 129
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 33/145 (22%)
Query: 23 DRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGD--- 79
D+ L + + LH A +T+ VE +L+ L + VN K D
Sbjct: 30 DKSLATRTDQDSRTALHWACSAGHTE----------IVEFLLQ----LGVPVNDKDDAGW 75
Query: 80 SPLHVAARYGHAAVVGALIEF-----AEKQPGQELESGVKSTTRYMLGM----------- 123
SPLH+AA G +V AL+ A Q G S R+ + +
Sbjct: 76 SPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 135
Query: 124 KNDEEDTALHEAVQSGSLDVVEILL 148
K+ E TA+H A G+L ++ ILL
Sbjct: 136 KDHYEATAMHRAAAKGNLKMIHILL 160
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 33.5 bits (75), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 21/101 (20%)
Query: 68 PSLLLQVNAKGDSPLHVAARYGHAAVVGALI------EFAEKQPGQELESGVKST----- 116
PSL ++ +G S +H+AA++GH ++V LI + ++ L T
Sbjct: 102 PSL---IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDP 158
Query: 117 TRYMLGMK-------NDEEDTALHEAVQSGSLDVVEILLGA 150
TR +L ++TALH AV +G+ V+ +LL A
Sbjct: 159 TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA 199
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 33.5 bits (75), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 33/145 (22%)
Query: 23 DRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGD--- 79
D+ L + + LH A +T+ VE +L+ L + VN K D
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTE----------IVEFLLQ----LGVPVNDKDDAGW 74
Query: 80 SPLHVAARYGHAAVVGALIEF-----AEKQPGQELESGVKSTTRYMLGM----------- 123
SPLH+AA G +V AL+ A Q G S R+ + +
Sbjct: 75 SPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 134
Query: 124 KNDEEDTALHEAVQSGSLDVVEILL 148
K+ E TA+H A G+L ++ ILL
Sbjct: 135 KDHYEATAMHRAAAKGNLKMIHILL 159
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 33.1 bits (74), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 18/95 (18%)
Query: 75 NAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLG--------MKND 126
+A G +PLH+AA YGH +V L++ ++ ++G +K+
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHG 103
Query: 127 EE--------DTALHEAVQSGSLDVVEILL--GAD 151
+ DT LH A G L++VE+LL GAD
Sbjct: 104 ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 74 VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTA 131
V+ GD+PLH+AA GH +V L++ Q+ T + + + N ED A
Sbjct: 109 VDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQD----KFGKTAFDISIDNGNEDLA 162
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 33.1 bits (74), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 19/76 (25%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
G +PLH+AA +GH +V L L++G GM T LH A +
Sbjct: 80 GYTPLHLAAYWGHLEIVEVL-----------LKNGADVNAMDSDGM------TPLHLAAK 122
Query: 138 SGSLDVVEILL--GAD 151
G L++VE+LL GAD
Sbjct: 123 WGYLEIVEVLLKHGAD 138
Score = 29.6 bits (65), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 19/76 (25%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
G +PLH+AA GH +V L L+ G + G T LH A
Sbjct: 47 GTTPLHLAAYSGHLEIVEVL-----------LKHGADVDASDVFGY------TPLHLAAY 89
Query: 138 SGSLDVVEILL--GAD 151
G L++VE+LL GAD
Sbjct: 90 WGHLEIVEVLLKNGAD 105
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 74 VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTA 131
+++ G +PLH+AA++G+ +V L++ Q+ T + + + N ED A
Sbjct: 109 MDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQD----KFGKTAFDISIDNGNEDLA 162
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 33.1 bits (74), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 60/145 (41%), Gaps = 33/145 (22%)
Query: 23 DRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGD--- 79
D+ L + + LH A +T+ VE +L+ L + VN K D
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTE----------IVEFLLQ----LGVPVNDKDDAGW 74
Query: 80 SPLHVAARYGHAAVVGALIEF-----AEKQPGQELESGVKSTTRY----ML---GMKNDE 127
SPLH+AA G +V AL+ A Q G S R+ ML G D
Sbjct: 75 SPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 134
Query: 128 ED----TALHEAVQSGSLDVVEILL 148
+D TA+H A G+L +V ILL
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILL 159
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 32.7 bits (73), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 22/94 (23%)
Query: 63 VLETCPSLLLQVNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRY 119
++E VNA G +PLH+AA GH +V L+++ + +
Sbjct: 62 IIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGY------- 114
Query: 120 MLGMKNDEEDTALHEAVQSGSLDVVEILL--GAD 151
T LH A + G L++VE+LL GAD
Sbjct: 115 ----------TPLHLAAEDGHLEIVEVLLKYGAD 138
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 19/76 (25%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
G +PLH+ GH ++ L+++A ++ + KS T LH A
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYA-----ADVNASDKSGW------------TPLHLAAY 89
Query: 138 SGSLDVVEILL--GAD 151
G L++VE+LL GAD
Sbjct: 90 RGHLEIVEVLLKYGAD 105
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 74 VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTA 131
++ +G +PLH+AA GH +V L+++ Q+ T + + + N ED A
Sbjct: 109 MDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQD----KFGKTAFDISIDNGNEDLA 162
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 19/77 (24%)
Query: 77 KGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAV 136
KG++PLH+AA Y H +V L+ + G ++ + +++ T LH A
Sbjct: 46 KGNTPLHLAADYDHLEIVEVLL-----KHGADVNA------------HDNDGSTPLHLAA 88
Query: 137 QSGSLDVVEILL--GAD 151
G L++VE+LL GAD
Sbjct: 89 LFGHLEIVEVLLKHGAD 105
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 60/145 (41%), Gaps = 33/145 (22%)
Query: 23 DRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGD--- 79
D+ L + + LH A +T+ VE +L+ L + VN K D
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTE----------IVEFLLQ----LGVPVNDKDDAGW 74
Query: 80 SPLHVAARYGHAAVVGALIEF-----AEKQPGQELESGVKSTTRY----ML---GMKNDE 127
SPLH+AA G +V AL+ A Q G S R+ ML G D
Sbjct: 75 SPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 134
Query: 128 ED----TALHEAVQSGSLDVVEILL 148
+D TA+H A G+L +V ILL
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILL 159
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 19/76 (25%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
G++PLH AA+ GHA V L L G R G +T LH A +
Sbjct: 9 GNTPLHNAAKNGHAEEVKKL-----------LSKGADVNARSKDG------NTPLHLAAK 51
Query: 138 SGSLDVVEILL--GAD 151
+G ++V++LL GAD
Sbjct: 52 NGHAEIVKLLLAKGAD 67
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
Query: 73 QVNAK---GDSPLHVAARYGHAAVVGALI 98
VNA+ G++PLH+AA+ GHA +V L+
Sbjct: 34 DVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 19/76 (25%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
G +PLH+AA GH +V L L++G + G+ T LH A
Sbjct: 47 GYTPLHLAASNGHLEIVEVL-----------LKNGADVNASDLTGI------TPLHLAAA 89
Query: 138 SGSLDVVEILL--GAD 151
+G L++VE+LL GAD
Sbjct: 90 TGHLEIVEVLLKHGAD 105
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTA 131
G +PLH+AA+YGH +V L++ Q+ T + + + N ED A
Sbjct: 113 GHTPLHLAAKYGHLEIVEVLLKHGADVNAQD----KFGKTAFDISIDNGNEDLA 162
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 26/99 (26%)
Query: 58 KFVELVLETCPSLLLQVNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVK 114
+ VE++L+ VNA G +PLH+AA GH +V L++ G ++ +
Sbjct: 61 EIVEVLLKNGA----DVNASDLTGITPLHLAAATGHLEIVEVLLKH-----GADVNA--- 108
Query: 115 STTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL--GAD 151
+++ T LH A + G L++VE+LL GAD
Sbjct: 109 ---------YDNDGHTPLHLAAKYGHLEIVEVLLKHGAD 138
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 19/80 (23%)
Query: 74 VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALH 133
++ G +PLH+AA+ GH +V L+++ G G+ T LH
Sbjct: 43 LDEDGLTPLHLAAQLGHLEIVEVLLKY-----------GADVNAEDNFGI------TPLH 85
Query: 134 EAVQSGSLDVVEILL--GAD 151
A G L++VE+LL GAD
Sbjct: 86 LAAIRGHLEIVEVLLKHGAD 105
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 19/80 (23%)
Query: 74 VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALH 133
V+ G +PLH+AA GH +V L+++ G + G+ T L+
Sbjct: 64 VDTNGTTPLHLAASLGHLEIVEVLLKY-----------GADVNAKDATGI------TPLY 106
Query: 134 EAVQSGSLDVVEILL--GAD 151
A G L++VE+LL GAD
Sbjct: 107 LAAYWGHLEIVEVLLKHGAD 126
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 19/76 (25%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
G +PLH+AA GH +V L+ + G ++ + + T T LH A
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLL-----RNGADVNAVDTNGT------------TPLHLAAS 77
Query: 138 SGSLDVVEILL--GAD 151
G L++VE+LL GAD
Sbjct: 78 LGHLEIVEVLLKYGAD 93
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 38/84 (45%), Gaps = 22/84 (26%)
Query: 73 QVNAKGD---SPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEED 129
VNA D +PLH+AA+ GH +V L L+ G + G
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVL-----------LKHGADVNASDIWGR------ 81
Query: 130 TALHEAVQSGSLDVVEILL--GAD 151
T LH A G L++VE+LL GAD
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGAD 105
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTA 131
G +PLH+AA GH +V L+E+ Q+ T + + + N ED A
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVNAQD----KFGKTAFDISIDNGNEDLA 129
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 26 LGSLVIHKKNSVLH--VNIIASYTQNKEGESVSTKFVELVLETCPSLLLQV-NAKGDSPL 82
L ++ K+N + N S +K GE + L L+ + +L ++ GD+ L
Sbjct: 228 LMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCL 287
Query: 83 HVAARYGHAAVVGALIEFA 101
++AAR G+ ++V AL+++
Sbjct: 288 NIAARLGNISIVDALLDYG 306
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 19/76 (25%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
G +PLH+AA GH +V L+++ G M G T LH A
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKY-----------GADVNAFDMTG------STPLHLAAD 122
Query: 138 SGSLDVVEILL--GAD 151
G L++VE+LL GAD
Sbjct: 123 EGHLEIVEVLLKYGAD 138
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 19/80 (23%)
Query: 74 VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALH 133
V+ G +PLH+AA GH +V L++ + V + Y T LH
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEVLLKHG---------ADVDAADVYGF--------TPLH 85
Query: 134 EAVQSGSLDVVEILL--GAD 151
A +G L++VE+LL GAD
Sbjct: 86 LAAMTGHLEIVEVLLKYGAD 105
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTA 131
G +PLH+AA GH +V L+++ Q+ T + + + N ED A
Sbjct: 113 GSTPLHLAADEGHLEIVEVLLKYGADVNAQD----KFGKTAFDISIDNGNEDLA 162
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 18/95 (18%)
Query: 75 NAKGDSPLHVAARYGHAAVVGALIE-----FAEKQPGQE-----LESGVKSTTRYML--- 121
++ G +PLH AA GH VV LI A+ G+ E+G K + ++
Sbjct: 34 DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG 93
Query: 122 ---GMKNDEEDTALHEAVQSGSLDVVEILL--GAD 151
K+ + T LH A ++G +VV++L+ GAD
Sbjct: 94 ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 128
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 17/70 (24%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
G +PLH+AAR GH VV L LE+G + G TA ++
Sbjct: 39 GSTPLHLAARNGHLEVVKLL-----------LEAGADVNAQDKFGK------TAFDISID 81
Query: 138 SGSLDVVEIL 147
+G+ D+ EIL
Sbjct: 82 NGNEDLAEIL 91
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 19/80 (23%)
Query: 74 VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALH 133
V+ G +PL +AA +GH +V L L++G M E T LH
Sbjct: 76 VDHAGMTPLRLAALFGHLEIVEVL-----------LKNGADVNANDM------EGHTPLH 118
Query: 134 EAVQSGSLDVVEILL--GAD 151
A G L++VE+LL GAD
Sbjct: 119 LAAMFGHLEIVEVLLKNGAD 138
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 19/79 (24%)
Query: 75 NAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHE 134
+A G +PLH+AA GH +V L L++G GM T L
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVL-----------LKNGADVNAVDHAGM------TPLRL 86
Query: 135 AVQSGSLDVVEILL--GAD 151
A G L++VE+LL GAD
Sbjct: 87 AALFGHLEIVEVLLKNGAD 105
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 24/93 (25%)
Query: 58 KFVELVLETCPSLLLQVNA---KGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVK 114
+ VE++L+ VNA +G +PLH+AA +GH +V L L++G
Sbjct: 94 EIVEVLLKNGA----DVNANDMEGHTPLHLAAMFGHLEIVEVL-----------LKNGAD 138
Query: 115 STTRYMLGMKNDEEDTALHEAVQSGSLDVVEIL 147
+ G TA ++ +G+ D+ EIL
Sbjct: 139 VNAQDKFG------KTAFDISIDNGNEDLAEIL 165
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 16/75 (21%)
Query: 74 VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALH 133
++ G + L+ A GH +V L QP EL K LG DTALH
Sbjct: 102 LDKAGSTALYWACHGGHKDIVEXLF----TQPNIELNQQNK------LG------DTALH 145
Query: 134 EAVQSGSLDVVEILL 148
A G D+V++LL
Sbjct: 146 AAAWKGYADIVQLLL 160
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 64 LETCPSLLL-QVNAKGDSPLHVAARYGHAAVVGALI 98
L T P++ L Q N GD+ LH AA G+A +V L+
Sbjct: 125 LFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 22/84 (26%)
Query: 73 QVNAKGD---SPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEED 129
VNA D +PLH+AA+ GH +V L++ + V ++ +
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG---------ADVNASDSW--------GR 81
Query: 130 TALHEAVQSGSLDVVEILL--GAD 151
T LH A G L++VE+LL GAD
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGAD 105
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 75 NAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTA 131
++ G +PLH+AA GH +V L+E+ Q+ T + + + N ED A
Sbjct: 77 DSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD----KFGKTAFDISIDNGNEDLA 129
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 74 VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTA 131
++A G++PLH+ A YGH +V L++ Q+ T + + + N ED A
Sbjct: 76 IDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQD----KFGKTAFDISIDNGNEDLA 129
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 15/77 (19%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
GD+PLH+A G+ V L+ + Q G+EL+ + N+ T LH AV
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQ-QGGRELD------------IYNNLRQTPLHLAVI 55
Query: 138 SGSLDVVEILL--GADP 152
+ VV +L+ GA P
Sbjct: 56 TTLPSVVRLLVTAGASP 72
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 75 NAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQEL 109
N +G++PL VA++YG + +V L+E ++L
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLELGADISARDL 165
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 20/77 (25%)
Query: 74 VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
VNAK G +PLH+AAR GH +V L L++G + G T
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVL-----------LKAGADVNAQDKFGK------T 70
Query: 131 ALHEAVQSGSLDVVEIL 147
A ++ +G+ D+ EIL
Sbjct: 71 AFDISIDNGNEDLAEIL 87
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 17/70 (24%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
G +PLH+AAR GH VV L LE+G + G TA ++
Sbjct: 57 GSTPLHLAARNGHLEVVKLL-----------LEAGADVXAQDKFGK------TAFDISID 99
Query: 138 SGSLDVVEIL 147
+G+ D+ EIL
Sbjct: 100 NGNEDLAEIL 109
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 19/79 (24%)
Query: 75 NAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHE 134
++ G +PLH+AA GH +V L++ + V + R T LH
Sbjct: 69 DSAGITPLHLAAYDGHLEIVEVLLKHG---------ADVNAYDRAGW--------TPLHL 111
Query: 135 AVQSGSLDVVEILL--GAD 151
A SG L++VE+LL GAD
Sbjct: 112 AALSGQLEIVEVLLKHGAD 130
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 22/83 (26%)
Query: 74 VNAKGD---SPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
VNA D +PLH+AA G +V L L++G G+ T
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVL-----------LKNGADVNASDSAGI------T 74
Query: 131 ALHEAVQSGSLDVVEILL--GAD 151
LH A G L++VE+LL GAD
Sbjct: 75 PLHLAAYDGHLEIVEVLLKHGAD 97
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 19/79 (24%)
Query: 75 NAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHE 134
++ G +PLH AA+ GH +V LI G ++ + K+ + T LH
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLI-----SKGADVNA------------KDSDGRTPLHY 76
Query: 135 AVQSGSLDVVEILL--GAD 151
A + G ++V++L+ GAD
Sbjct: 77 AAKEGHKEIVKLLISKGAD 95
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 73 QVNAK---GDSPLHVAARYGHAAVVGALI 98
VNAK G +PLH AA+ GH +V LI
Sbjct: 95 DVNAKDSDGRTPLHYAAKEGHKEIVKLLI 123
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 29.3 bits (64), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 67 CPSLLLQ----VNAKGD--SPLHVAARYGHAAVVGALIEF 100
C +LLLQ V + D SP+H AAR GH V +LI +
Sbjct: 84 CVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAY 123
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 19/76 (25%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
G +PLH+AA GH +V L+ + G ++ + +T R T LH A
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLL-----KNGADVNA-TGNTGR-----------TPLHLAAW 89
Query: 138 SGSLDVVEILL--GAD 151
+ L++VE+LL GAD
Sbjct: 90 ADHLEIVEVLLKHGAD 105
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 67 CPSLLLQ----VNAKGD--SPLHVAARYGHAAVVGALIEFA 101
C +LLLQ V + D SP+H AAR GH V +LI +
Sbjct: 140 CVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYG 180
>pdb|2O7T|A Chain A, Crystal Structure Of A Tetr Family Transcriptional
Regulator (Ncgl1578, Cgl1640) From Corynebacterium
Glutamicum At 2.10 A Resolution
Length = 199
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 6 YEAAAKGVIEPFNQLAIDRQLGSLV 30
+ +GV FNQL DR LGSLV
Sbjct: 78 FPTDPEGVWTSFNQLLFDRGLGSLV 102
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 130 TALHEAVQSGSLDVVEILL--GADPAF 154
T LH AVQ D+VE+LL GADP
Sbjct: 61 TPLHNAVQMSREDIVELLLRHGADPVL 87
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 130 TALHEAVQSGSLDVVEILL--GADPAF 154
T LH AVQ D+VE+LL GADP
Sbjct: 41 TPLHNAVQMSREDIVELLLRHGADPVL 67
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 19/77 (24%)
Query: 80 SPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSG 139
+PLHVAA H V+ L + G K LG TALH A +G
Sbjct: 249 TPLHVAAERAHNDVMEVLHKH-----------GAKMNALDSLG------QTALHRAALAG 291
Query: 140 SLDVVEILL--GADPAF 154
L +LL G+DP+
Sbjct: 292 HLQTCRLLLSYGSDPSI 308
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 26/94 (27%)
Query: 70 LLLQ----VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLG 122
LLLQ V+AK G PLH A YGH V L++ + V + +
Sbjct: 76 LLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG---------ACVNAMDLWQF- 125
Query: 123 MKNDEEDTALHEAVQSGSLDVVEILL--GADPAF 154
T LHEA ++V +LL GADP
Sbjct: 126 -------TPLHEAASKNRVEVCSLLLSHGADPTL 152
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLG-----MKNDEEDTAL 132
G P+H+A +V AL+E A K+ GQ ES + + +K+ + TAL
Sbjct: 84 GQKPIHLAVXANKTDLVVALVEGA-KERGQXPESLLNECDEREVNEIGSHVKHCKGQTAL 142
Query: 133 HEAVQSGS--LDVVEIL--LGADP 152
H V G L+ ++IL LGA P
Sbjct: 143 HWCVGLGPEYLEXIKILVQLGASP 166
>pdb|3LA4|A Chain A, Crystal Structure Of The First Plant Urease From Jack Bean
(Canavalia Ensiformis)
Length = 840
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 11/109 (10%)
Query: 22 IDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSL-------LLQV 74
I R+ G L S+L V + + + KE + + L + C +L +L+V
Sbjct: 100 ISRENGELQEALFGSLLPVPSLDKFAETKEDNRIPGEI--LCEDECLTLNIGRKAVILKV 157
Query: 75 NAKGDSPLHVAARYGHAAVVGALIEFAEKQP-GQELESGVKSTTRYMLG 122
+KGD P+ V + Y H V + F ++ G L + R+ G
Sbjct: 158 TSKGDRPIQVGSHY-HFIEVNPYLTFDRRKAYGMRLNIAAGTAVRFEPG 205
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 31/154 (20%)
Query: 2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSV-LHVNIIASYTQNKEGESVSTKFV 60
+ L EAA G +E +L + + I + S LH A Y + V
Sbjct: 11 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLH--FAAGYNR--------VSVV 60
Query: 61 ELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYM 120
E +L+ + + + G PLH A YGH V L++ +
Sbjct: 61 EYLLQHGADVHAK-DKGGLVPLHNACSYGHYEVAELLVKHGA-----------------V 102
Query: 121 LGMKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
+ + + + T LHEA G ++ ++LL GADP
Sbjct: 103 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 136
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 19/74 (25%)
Query: 81 PLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGS 140
PLH A YGH V L++ ++ + + + T LHEA G
Sbjct: 78 PLHNACSYGHYEVAELLVKHGA-----------------VVNVADLWKFTPLHEAAAKGK 120
Query: 141 LDVVEILL--GADP 152
++ ++LL GADP
Sbjct: 121 YEICKLLLQHGADP 134
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 19/74 (25%)
Query: 81 PLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGS 140
PLH A YGH V L++ ++ + + + T LHEA G
Sbjct: 82 PLHNACSYGHYEVAELLVKHGA-----------------VVNVADLWKFTPLHEAAAKGK 124
Query: 141 LDVVEILL--GADP 152
++ ++LL GADP
Sbjct: 125 YEICKLLLQHGADP 138
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 18/80 (22%)
Query: 75 NAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHE 134
N G +PLHVA + A +V L + G +L + R T LH
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLL-----RDAGADLNKPEPTCGR-----------TPLHL 198
Query: 135 AVQSGSLDVVEILL--GADP 152
AV++ + V+E+LL GADP
Sbjct: 199 AVEAQAASVLELLLKAGADP 218
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 18/80 (22%)
Query: 75 NAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHE 134
N G +PLHVA + A +V L + G +L + R T LH
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLL-----RDAGADLNKPEPTCGR-----------TPLHL 198
Query: 135 AVQSGSLDVVEILL--GADP 152
AV++ + V+E+LL GADP
Sbjct: 199 AVEAQAASVLELLLKAGADP 218
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex
Including Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter
Dna Sequence
Length = 256
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 47 TQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIE 99
T N E E + + + SL Q + G++ LH+AARY + L+E
Sbjct: 27 TGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE 79
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 14/88 (15%)
Query: 60 VELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRY 119
V+ +L + PSLLLQ + G PLH + + + L+ K
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS--------------KMENVN 63
Query: 120 MLGMKNDEEDTALHEAVQSGSLDVVEIL 147
+ +D T H A G+L+VV+ L
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSL 91
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 47 TQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIE 99
T N E E + + + SL Q + G++ LH+AARY + L+E
Sbjct: 26 TGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE 78
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 16/71 (22%)
Query: 77 KGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAV 136
+G+ PLH+AA+ GH VV EF K T +G +N + DTA A
Sbjct: 102 EGNLPLHLAAKEGHLRVV----EFLVKH------------TASNVGHRNHKGDTACDLAR 145
Query: 137 QSGSLDVVEIL 147
G +VV ++
Sbjct: 146 LYGRNEVVSLM 156
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 16/71 (22%)
Query: 77 KGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAV 136
+G+ PLH+AA+ GH VV EF K T +G +N + DTA A
Sbjct: 102 EGNLPLHLAAKEGHLRVV----EFLVKH------------TASNVGHRNHKGDTACDLAR 145
Query: 137 QSGSLDVVEIL 147
G +VV ++
Sbjct: 146 LYGRNEVVSLM 156
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 16/71 (22%)
Query: 77 KGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAV 136
+G+ PLH+AA+ GH VV EF K T +G +N + DTA A
Sbjct: 102 EGNLPLHLAAKEGHLRVV----EFLVKH------------TASNVGHRNHKGDTACDLAR 145
Query: 137 QSGSLDVVEIL 147
G +VV ++
Sbjct: 146 LYGRNEVVSLM 156
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 14/88 (15%)
Query: 60 VELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRY 119
V+ +L + PSLLLQ + G PLH + + + L+ K
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS--------------KMENVN 63
Query: 120 MLGMKNDEEDTALHEAVQSGSLDVVEIL 147
+ +D T H A G+L+VV+ L
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSL 91
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 16/71 (22%)
Query: 77 KGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAV 136
+G+ PLH+AA+ GH VV EF K T +G +N + DTA A
Sbjct: 102 EGNLPLHLAAKEGHLRVV----EFLVKH------------TASNVGHRNHKGDTACDLAR 145
Query: 137 QSGSLDVVEIL 147
G +VV ++
Sbjct: 146 LYGRNEVVSLM 156
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 73 QVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTAL 132
Q A G++ LH+AA Y + L+E A + + + S + E TAL
Sbjct: 32 QRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELY------------EGQTAL 79
Query: 133 HEAVQSGSLDVVEILLGADPAFPYSANGS 161
H AV + ++++V LL + A GS
Sbjct: 80 HIAVINQNVNLVRALLARGASVSARATGS 108
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 14/88 (15%)
Query: 60 VELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRY 119
V+ +L + PSLLLQ + G PLH + + + L+ K
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS--------------KMENVN 63
Query: 120 MLGMKNDEEDTALHEAVQSGSLDVVEIL 147
+ +D T H A G+L+VV+ L
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSL 91
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 16/71 (22%)
Query: 77 KGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAV 136
+G+ PLH+AA+ GH VV EF K T +G +N + DTA A
Sbjct: 102 EGNLPLHLAAKEGHLRVV----EFLVKH------------TASNVGHRNHKGDTACDLAR 145
Query: 137 QSGSLDVVEIL 147
G +VV ++
Sbjct: 146 LYGRNEVVSLM 156
>pdb|1UP8|A Chain A, Recombinant Vanadium-Dependent Bromoperoxidase From Red
Algae Corallina Pilulifera
pdb|1UP8|B Chain B, Recombinant Vanadium-Dependent Bromoperoxidase From Red
Algae Corallina Pilulifera
pdb|1UP8|C Chain C, Recombinant Vanadium-Dependent Bromoperoxidase From Red
Algae Corallina Pilulifera
pdb|1UP8|D Chain D, Recombinant Vanadium-Dependent Bromoperoxidase From Red
Algae Corallina Pilulifera
Length = 598
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 68 PSLLLQVNAKGDSPLHVAARYGHAAVVGALI 98
PS LL + SP H + GHA V GA +
Sbjct: 465 PSFLLPMAFAEGSPFHPSYGSGHAVVAGACV 495
>pdb|4GY7|A Chain A, Crystallographic Structure Analysis Of Urease From Jack
Bean (Canavalia Ensiformis) At 1.49 A Resolution
Length = 840
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 69 SLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQP-GQELESGVKSTTRYMLG 122
+++L+V +KGD P+ V + Y H V + F ++ G L + R+ G
Sbjct: 152 AVILKVTSKGDRPIQVGSHY-HFIEVNPYLTFDRRKAYGMRLNIAAGTAVRFEPG 205
>pdb|4H9M|A Chain A, The First Jack Bean Urease (Canavalia Ensiformis) Complex
Obtained At 1.52 Resolution
Length = 840
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 69 SLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQP-GQELESGVKSTTRYMLG 122
+++L+V +KGD P+ V + Y H V + F ++ G L + R+ G
Sbjct: 152 AVILKVTSKGDRPIQVGSHY-HFIEVNPYLTFDRRKAYGMRLNIAAGTAVRFEPG 205
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 123 MKNDEEDTALHEAVQSGSLDVVEILL 148
+ NDE TALH AV +G ++V+ L+
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLV 90
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 123 MKNDEEDTALHEAVQSGSLDVVEILL 148
+ NDE TALH AV +G ++V+ L+
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLV 90
>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|C Chain C, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|D Chain D, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0H|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0H|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0R|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb).
pdb|4A0R|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb)
Length = 831
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 7 EAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYT-----QNKEGESVSTKFV- 60
++ ++ V + L++ RQ+ I NSVLH ++ A+ + + E S F
Sbjct: 84 DSDSRFVFSKLDSLSLRRQIP---ISISNSVLHSSLPAAKSLGLNVEVSESGMCSLNFRD 140
Query: 61 ELVLETCPSLLLQVNAKGDSPL--HVAARYGHAAVVGALI-EFAEKQPGQELESGVKS 115
E + P LL + ++ + H+AA +A V +++ + EK +E+E GVKS
Sbjct: 141 EKTVTGAPELLCKTLYAWEAAISPHLAAERENATVEDSVVLQMIEKCLKEEMECGVKS 198
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 56 STKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIE 99
TK V+ +L+ + +V+ +G++PL++A + ALI+
Sbjct: 17 DTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 17/80 (21%)
Query: 69 SLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEE 128
SL Q + G++ LH+AARY + L LE+ + + +G
Sbjct: 13 SLHNQTDRTGETALHLAARYSRSDAAKRL-----------LEASADAXIQDNMGR----- 56
Query: 129 DTALHEAVQSGSLDVVEILL 148
T LH AV + + V +ILL
Sbjct: 57 -TPLHAAVSADAQGVFQILL 75
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 22/84 (26%)
Query: 73 QVNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEED 129
VNAK G +PL++A +GH +V L L++G +G
Sbjct: 39 DVNAKDEYGLTPLYLATAHGHLEIVEVL-----------LKNGADVNAVDAIGF------ 81
Query: 130 TALHEAVQSGSLDVVEILL--GAD 151
T LH A G L++ E+LL GAD
Sbjct: 82 TPLHLAAFIGHLEIAEVLLKHGAD 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,504,505
Number of Sequences: 62578
Number of extensions: 162112
Number of successful extensions: 593
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 305
Number of HSP's gapped (non-prelim): 224
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)