BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048101
(400 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q47319|YFIP_ECOLI DTW domain-containing protein YfiP OS=Escherichia coli (strain K12)
GN=yfiP PE=3 SV=2
Length = 232
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 300 LIVLDGTWSKAKRMYKENPWLKLLPHLKLDLDKMSLYSEVRHQPKAGYLSTIESTVYTLM 359
I+LDGTW +A++M++++P+L LP + +DL ++S Y +R G T E + L
Sbjct: 133 FIMLDGTWPEARKMFRKSPYLDNLPVISVDLSRLSAY-RLREAQAEGQYCTAEVAIALLD 191
Query: 360 ALGDN 364
GD
Sbjct: 192 MAGDT 196
>sp|Q9D0U1|DTWD2_MOUSE DTW domain-containing protein 2 OS=Mus musculus GN=Dtwd2 PE=2 SV=1
Length = 298
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 274 GSVLLFPSENAVGVDDLKAMNFEV--KNLIVLDGTWSKAKRMYKENPWLKLLPHLKLDLD 331
G+++L+P A +++ ++ V +I++DGTWS+AK ++ +N +L ++L
Sbjct: 147 GTLILYPGAEATNLEEF-ILDSPVYPSTIILIDGTWSQAKDIFYKNSLFRLPKQVQLKTS 205
Query: 332 KMSLYSEVRHQPKAGYLSTIESTVYTLMALGDNTERLNNLLDVFESMVGDQ 382
S Y +R QP LST+E L L N LL +++ Q
Sbjct: 206 VCSQYV-IRMQPTNRCLSTLECAAVALSILEKNNCIQETLLRPLQALCSFQ 255
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 35/82 (42%)
Query: 9 KRSICPSCSKPTRLCLCNRIQDPGLENSVSVTILQHSLERNHPLNSTRIAKLGLKNVTVA 68
+R C CS+P ++CLC + L+ S + I+QH E + L + + L
Sbjct: 65 RRPECGRCSRPQKVCLCPYLPVRPLQISTHLYIIQHPAEESRVLRTVPLLAACLPPDRCT 124
Query: 69 TVFDVNFEARFDIRLTESCQES 90
F D+ L C++S
Sbjct: 125 VKIGRRFSEERDVELATVCRDS 146
>sp|Q8NBA8|DTWD2_HUMAN DTW domain-containing protein 2 OS=Homo sapiens GN=DTWD2 PE=2 SV=1
Length = 298
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 274 GSVLLFPSENAVGVDDLKAMNFEV--KNLIVLDGTWSKAKRMYKENPWLKLLPHLKLDLD 331
G+++L+P A +++ ++ V +I++DGTWS+AK ++ +N L H K
Sbjct: 147 GTLILYPGAEAANLEEF-ILDSPVYPSTIIIIDGTWSQAKDIFYKN---SLFRHPKQVQL 202
Query: 332 KMSLYSE--VRHQPKAGYLSTIESTVYTLMALGDNTERLNNLLDVFESMVGDQ 382
K S+ S+ +R QP LST+E L L N LL +++ Q
Sbjct: 203 KTSISSQYVIRMQPTNRCLSTLECAAVALSILEKNNYIQETLLRPLQALCSFQ 255
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 35/88 (39%)
Query: 3 ATDAKSKRSICPSCSKPTRLCLCNRIQDPGLENSVSVTILQHSLERNHPLNSTRIAKLGL 62
+ +R C CS+P ++CLC + L S + I+QH E N L + + L
Sbjct: 59 PVEPAERRPECTRCSRPQKVCLCPFLPAHPLHISTHLYIIQHPAEENKVLRTVPLLAACL 118
Query: 63 KNVTVATVFDVNFEARFDIRLTESCQES 90
F D L+ C++S
Sbjct: 119 PQDKCKVKIGRRFSEERDPELSTVCRKS 146
>sp|Q4R7M4|DTWD2_MACFA DTW domain-containing protein 2 OS=Macaca fascicularis GN=DTWD2
PE=2 SV=1
Length = 298
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 274 GSVLLFPSENAVGVDDLKAMNFEV--KNLIVLDGTWSKAKRMYKENPWLKLLPHLKLDLD 331
G+++L+P A +++ ++ V +I++DGTWS+AK ++ +N L H K
Sbjct: 147 GTLILYPGAEAANLEEF-ILDSPVYPSTIIIIDGTWSQAKDIFYKN---SLFRHPKQVQL 202
Query: 332 KMSLYSE--VRHQPKAGYLSTIESTVYTLMALGDNTERLNNLLDVFESMVGDQ 382
K S+ S+ +R QP LST+E L L N LL +++ Q
Sbjct: 203 KTSISSQYVIRMQPTNRCLSTLECAAVALSILEKNNYIQETLLRPLQALCSFQ 255
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 35/88 (39%)
Query: 3 ATDAKSKRSICPSCSKPTRLCLCNRIQDPGLENSVSVTILQHSLERNHPLNSTRIAKLGL 62
+ +R C CS+P ++CLC + L S + I+QH E N L + + L
Sbjct: 59 PVEPAKRRPECSRCSRPQKVCLCPFLPAHPLHISTHLYIIQHPAEENKVLRTVPLLAACL 118
Query: 63 KNVTVATVFDVNFEARFDIRLTESCQES 90
F D L+ C++S
Sbjct: 119 PQDKCKVKIGRRFSEERDPELSTVCRKS 146
>sp|Q5XJ56|DTWD1_DANRE DTW domain-containing protein 1 OS=Danio rerio GN=dtwd1 PE=2 SV=1
Length = 251
Score = 39.3 bits (90), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 26/124 (20%)
Query: 276 VLLFPSENAVGVDDL-------------------KAMNFEVKNLIVLDGTWSKAKRMYKE 316
VL+FP +A+ V++L +++ ++ ++ +D TW++ R+ +
Sbjct: 113 VLVFPGPDAMSVEELWEYFCADGRPRVKRVKAEAESLRCPIQRVVFIDSTWNQTSRIITD 172
Query: 317 NPWLKLLPHLKLDLDKMSLYSEVRHQPKAGYLSTIESTVYTLMALG-----DNTERLNNL 371
L+ LP+++L K + + P YL+TIE+ Y L L + T +NL
Sbjct: 173 E-RLQALPNVELKSRKTCFWRRQKGSPDT-YLATIEAIYYFLKDLHCHYFCEYTGEYDNL 230
Query: 372 LDVF 375
L F
Sbjct: 231 LFFF 234
>sp|Q6DDV1|DTWD1_XENLA DTW domain-containing protein 1 OS=Xenopus laevis GN=dtwd1 PE=2
SV=1
Length = 291
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 286 GVDDLKAMNFEVKNLIVLDGTWSKAKRMYKENPWLKLLPHLKLDLDKMSLYSEVRHQPKA 345
G+D K +NF +K +I +D TW++ +M + L+ L H++L K + + P
Sbjct: 182 GIDKKKPVNF-LKKVIFIDSTWNQTNKMIADE-RLQGLVHVELMERKTFFWRHQKGTPNT 239
Query: 346 GYLSTIESTVY------TLMALGDNTERLNNLLDVFESM 378
YLSTIE+ Y T + D +NLL F M
Sbjct: 240 -YLSTIEAIYYFMVDYHTKILQKDYKGEYDNLLFFFSFM 277
>sp|Q28I29|DTWD1_XENTR DTW domain-containing protein 1 OS=Xenopus tropicalis GN=dtwd1 PE=2
SV=1
Length = 294
Score = 35.8 bits (81), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 286 GVDDLKAMNFEVKNLIVLDGTWSKAKRMYKENPWLKLLPHLKLDLDKMSLYSEVRHQPKA 345
GV++ K M+F +K LI +D TW++ ++ + L+ L ++L K + + P
Sbjct: 185 GVEEKKPMHF-LKKLIFIDSTWNQTNKIISDE-RLQGLQQVELMERKTCFWRHQKGTPNT 242
Query: 346 GYLSTIESTVY------TLMALGDNTERLNNLLDVFESM 378
YLSTIE+ Y T++ D ++LL F M
Sbjct: 243 -YLSTIEAIYYFMIDYHTIILQKDYKGEYDDLLFFFSFM 280
>sp|Q9D8U7|DTWD1_MOUSE DTW domain-containing protein 1 OS=Mus musculus GN=Dtwd1 PE=2 SV=1
Length = 304
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 269 LEVSPGSVLLFPSENAVGVDDLKAMNFEVKNLIVLDGTWSKAKRMYKENPWLKLLPHLKL 328
L+V P + E + + E+K ++ +D TWS+ ++ + +LL ++L
Sbjct: 171 LDVPPRKLKRTTDEEGWDLHESTRQGPELKRVVFIDSTWSQTNQIASDERLRELL-QVEL 229
Query: 329 DLDKMSLYSEVRHQPKAGYLSTIESTVYTLM 359
K + + +P +LSTIE+ Y L+
Sbjct: 230 RTRKTCFWRHQKGKPDT-FLSTIEAIYYFLV 259
>sp|B0BRW3|MTNN_ACTPJ 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
OS=Actinobacillus pleuropneumoniae serotype 3 (strain
JL03) GN=mtnN PE=3 SV=1
Length = 232
Score = 32.3 bits (72), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 10/127 (7%)
Query: 169 GTFASETHCCSLFRKYYLGHKAISYGG-------YGDPTIAVTISKYGVISGLVCNWVLT 221
G + + R + K I G + +A+ S G +S + +L
Sbjct: 6 GIIGAMAQEVEILRNLMVEAKVIKMAGCKIYDGKINNTKVALLQSGIGKVSAAIGTTLLL 65
Query: 222 DCQKPNFDQIVGSQVALDA-LEKGFVVKKMGKRELDGNLESEEYEEYKLEVSPGSVLLFP 280
+ KP+ GS LDA L G +V R D ++ + YE+ +L +P + L P
Sbjct: 66 ELTKPDMVINTGSAGGLDANLNVGDIVISTEVRHHDADVTAFGYEKGQLPANPAAFL--P 123
Query: 281 SENAVGV 287
+E V V
Sbjct: 124 NEQLVSV 130
>sp|Q6AYF5|DTWD1_RAT DTW domain-containing protein 1 OS=Rattus norvegicus GN=Dtwd1 PE=2
SV=1
Length = 304
Score = 32.0 bits (71), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 62/136 (45%), Gaps = 11/136 (8%)
Query: 269 LEVSPGSVLLFPSENAVGVDDLKAMNFEVKNLIVLDGTWSKAKRMYKENPWLKLLPHLKL 328
L++ P ++ ++ +++ E+K ++ +D TWS+ ++ + +LL ++L
Sbjct: 171 LDMPPRKLVRTEAQEGWHLNESMGKGPELKRVVFIDSTWSQTNQITSDERLRELL-QVEL 229
Query: 329 DLDKMSLYSEVRHQPKAGYLSTIESTVYTLMALGDNTER------LNNLLDVFESM---V 379
K + + +P +LSTIE+ Y L+ ++ +NLL + M +
Sbjct: 230 KTRKTCFWRHQKGKPDT-FLSTIEAIYYFLVDYHRAVQKEEYRGQYDNLLFFYSFMYRLI 288
Query: 380 GDQRRCKDERLSKVSH 395
+ RR ++ K H
Sbjct: 289 KEARRSGEKAKQKPIH 304
>sp|Q5RCQ0|DTWD1_PONAB DTW domain-containing protein 1 OS=Pongo abelii GN=DTWD1 PE=2 SV=1
Length = 304
Score = 32.0 bits (71), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 287 VDDLKAMNFEVKNLIVLDGTWSKAKRMYKENPWLKLLPHLKLDLDKMSLYSEVRHQPKAG 346
++D K +K +I +D TW++ +++ + LL ++L K + + +P
Sbjct: 189 LNDSKCKGTTLKKIIFIDSTWNQTNKIFTDERLQGLL-QVELKTRKTCFWRHQKGKPDT- 246
Query: 347 YLSTIESTVYTLM 359
+LSTIE+ Y L+
Sbjct: 247 FLSTIEAIYYFLV 259
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,796,584
Number of Sequences: 539616
Number of extensions: 6604257
Number of successful extensions: 14865
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 14854
Number of HSP's gapped (non-prelim): 25
length of query: 400
length of database: 191,569,459
effective HSP length: 120
effective length of query: 280
effective length of database: 126,815,539
effective search space: 35508350920
effective search space used: 35508350920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)