Query 048101
Match_columns 400
No_of_seqs 215 out of 709
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 06:17:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03942 DTW: DTW domain; Int 100.0 5.4E-43 1.2E-47 322.3 16.7 111 273-384 78-201 (203)
2 COG3148 Uncharacterized conser 100.0 3.1E-37 6.7E-42 288.7 9.0 195 7-392 24-222 (231)
3 KOG4382 Uncharacterized conser 100.0 6.2E-34 1.3E-38 269.0 2.2 256 4-311 14-275 (276)
4 KOG4382 Uncharacterized conser 99.4 2.1E-12 4.5E-17 123.5 8.7 162 194-362 24-213 (276)
5 PRK02287 hypothetical protein; 99.3 1.3E-11 2.8E-16 113.8 8.8 114 273-398 39-155 (171)
6 KOG3795 Uncharacterized conser 99.2 7.3E-12 1.6E-16 116.2 3.4 100 260-363 85-186 (230)
7 PF04034 DUF367: Domain of unk 99.0 7.4E-10 1.6E-14 97.9 6.0 111 276-398 1-114 (127)
8 COG2042 Uncharacterized conser 98.9 2.9E-09 6.4E-14 98.0 6.5 111 275-397 49-162 (179)
9 KOG3154 Uncharacterized conser 96.4 0.0026 5.6E-08 61.8 3.5 109 276-396 81-193 (263)
10 PF03942 DTW: DTW domain; Int 91.6 0.11 2.5E-06 48.3 2.2 38 194-233 6-43 (203)
11 COG3148 Uncharacterized conser 45.2 13 0.00028 36.5 1.7 35 191-225 28-62 (231)
12 PF09282 Mago-bind: Mago bindi 40.9 4.3 9.3E-05 27.6 -1.5 11 303-313 11-21 (27)
13 PRK06824 translation initiatio 22.6 67 0.0014 28.7 2.3 24 9-32 15-38 (118)
14 PF08803 ydhR: Putative mono-o 21.5 72 0.0016 27.7 2.2 40 36-76 47-88 (97)
15 COG4338 Uncharacterized protei 21.2 42 0.00091 26.0 0.7 21 1-21 1-23 (54)
16 cd01776 Rin1_RA Ubiquitin doma 21.2 39 0.00085 28.8 0.5 39 272-310 14-58 (87)
17 KOG3795 Uncharacterized conser 21.1 1.3E+02 0.0029 29.1 4.1 68 5-73 10-86 (230)
18 PRK00939 translation initiatio 21.1 96 0.0021 26.7 2.9 19 11-29 2-20 (99)
No 1
>PF03942 DTW: DTW domain; InterPro: IPR005636 This presumed domain is found in bacterial and eukaryotic proteins. Its function is unknown. The domain contains multiple conserved motifs including a DTXW motif that this domain has been named after.
Probab=100.00 E-value=5.4e-43 Score=322.27 Aligned_cols=111 Identities=44% Similarity=0.751 Sum_probs=99.6
Q ss_pred CCeEEEcCCCCCCCchhhh------------hcccceeeEEEEcCchhhHHHhhhhCCCCCCCCeEEecCCCCccccccc
Q 048101 273 PGSVLLFPSENAVGVDDLK------------AMNFEVKNLIVLDGTWSKAKRMYKENPWLKLLPHLKLDLDKMSLYSEVR 340 (400)
Q Consensus 273 ~~tvLLFPse~A~~leel~------------~~~~k~~~LIVIDGTWrQAkkM~r~sP~L~~LP~VsL~~~~~S~Y~~IR 340 (400)
..++||||+++|.+++++. ....++.+||||||||+||++|++++|||++||+|+|.+...|+|+ +|
T Consensus 78 ~~~~lLfP~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lIviDgTW~qA~km~~~~p~l~~lp~v~l~~~~~s~y~-lR 156 (203)
T PF03942_consen 78 YRTVLLFPSEDAIDLEELFSAASGEALQSSEEDSGKPKTLIVIDGTWRQAKKMLRRSPWLQQLPRVSLKPSPPSFYR-LR 156 (203)
T ss_pred CcEEEEeeCCcccchhHHhhhhccccccccccccCCceEEEEECCchHHHHHHHhhCccccCCceeeCCCCccccee-eE
Confidence 3468999999999998871 1235678999999999999999999999999999999999999998 99
Q ss_pred cCCCCCCccHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHHHH
Q 048101 341 HQPKAGYLSTIESTVYTLMALGDN-TERLNNLLDVFESMVGDQRR 384 (400)
Q Consensus 341 kQp~~g~LSTIEAia~aL~~Lge~-~e~~d~LL~~F~~Mv~~Q~~ 384 (400)
++|.+++|||+||++++|+++++. ...+++|+++|+.|+++++.
T Consensus 157 k~~~~~~lsT~EAv~~~L~~l~~~~~~~~~~Ll~~f~~~~~~~~~ 201 (203)
T PF03942_consen 157 KQPKEGCLSTLEAVAYALKELEEAPDEVADNLLDAFDAMVRRQQL 201 (203)
T ss_pred ecCCCCCEeHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999986 34589999999999987654
No 2
>COG3148 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.1e-37 Score=288.66 Aligned_cols=195 Identities=29% Similarity=0.463 Sum_probs=168.0
Q ss_pred CCCCCCCCCCCCCcccccccccCCCCCCceeEEEEEeCCccccCCCChHHHHhhccCCcE--EEEEeecCcceEEEEEec
Q 048101 7 KSKRSICPSCSKPTRLCLCNRIQDPGLENSVSVTILQHSLERNHPLNSTRIAKLGLKNVT--VATVFDVNFEARFDIRLT 84 (400)
Q Consensus 7 ~~~R~~C~rC~rP~~~ClC~~i~~~pl~~~~~v~ILQHP~E~~halnT~rLl~l~L~n~~--Vg~~fdvn~~a~f~~~~~ 84 (400)
..++..|.+|.+|.++|||+.| ||++.++++.+||||.|..+++||+||++++|+|++ ++++|.+|.
T Consensus 24 g~~~~rC~~C~l~~~~CLCa~i--p~~ea~~~~~Ll~hdtE~~kpsNTgrliad~l~dt~a~~wsRte~~~--------- 92 (231)
T COG3148 24 GNRVRRCQRCLLPEKHCLCATI--PPLEARSRFCLLMHDTEPMKPSNTGRLIADILADTRAFQWSRTEPNP--------- 92 (231)
T ss_pred CCcchhhhhhCChhhhccccCc--CCcccceeEEEEecCccccCCCcchhHHHHhhhhhhhhhccccCCCH---------
Confidence 3578899999999999999999 899999999999999999999999999999998865 444433221
Q ss_pred ccccccccCCCCccccceeccccccccCCCCcCCCCccccCCcccccCCCCCCCCCcccccCCceeecCCCccceecccC
Q 048101 85 ESCQESVDDGFGLKGENVIGLKCKKFKKGFGEEDSSLIDVNKDCCLGNDMSGTLDANSYLKGSNVVNDFDGLVSVQETEG 164 (400)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (400)
T Consensus 93 -------------------------------------------------------------------------------- 92 (231)
T COG3148 93 -------------------------------------------------------------------------------- 92 (231)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccccccccceeeecccccccCCCCCCCceeeeecccccccccceeeEEecCCCCchhhhccChhHHHhhhcC
Q 048101 165 NGENGTFASETHCCSLFRKYYLGHKAISYGGYGDPTIAVTISKYGVISGLVCNWVLTDCQKPNFDQIVGSQVALDALEKG 244 (400)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~i~c~c~~~~~~~~~~~~wi~~~~~~~~f~r~l~~p~~~e~~~~g 244 (400)
T Consensus 93 -------------------------------------------------------------------------------- 92 (231)
T COG3148 93 -------------------------------------------------------------------------------- 92 (231)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeecchhhcccccCcccchhhhcccCCCeEEEcCCCCCCCchhhhhc--ccceeeEEEEcCchhhHHHhhhhCCCCCC
Q 048101 245 FVVKKMGKRELDGNLESEEYEEYKLEVSPGSVLLFPSENAVGVDDLKAM--NFEVKNLIVLDGTWSKAKRMYKENPWLKL 322 (400)
Q Consensus 245 f~~~k~~~~~l~~~~~~~e~e~f~i~~~~~tvLLFPse~A~~leel~~~--~~k~~~LIVIDGTWrQAkkM~r~sP~L~~ 322 (400)
.|..++.+|+|+. +||||++.|....+.... ..|+..||+|||||++|+|||++||||.+
T Consensus 93 ---------eLl~ll~~P~~~p---------~lvfP~e~a~e~t~v~~~~p~~k~plfIllDgTW~eArKMfrksPyLa~ 154 (231)
T COG3148 93 ---------ELLALLANPDYQP---------YLVFPAEYAEELTEVISTAPAEKPPLFILLDGTWREARKMFRKSPYLAD 154 (231)
T ss_pred ---------HHHHHHhCCCCce---------EEEcchHHHHHHHHHhhcccccCCceEEEecCccHHHHHHHhcCchhcc
Confidence 1222344567765 699999999877665433 23577999999999999999999999999
Q ss_pred CCeEEecCCCCccccccccCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhccccc
Q 048101 323 LPHLKLDLDKMSLYSEVRHQPKAGYLSTIESTVYTLMALGDNTERLNNLLDVFESMVGDQRRCKDERLSK 392 (400)
Q Consensus 323 LP~VsL~~~~~S~Y~~IRkQp~~g~LSTIEAia~aL~~Lge~~e~~d~LL~~F~~Mv~~Q~~~k~e~l~~ 392 (400)
||.|+|..+..|.|+ ||+.+.++.|||+|+++++|..+|. ....+.|..+|+.|+++|+..|.+++-.
T Consensus 155 lP~vsl~~~~lS~YR-LRka~~e~~lcT~Eva~~lLd~~gd-~~aae~L~~~f~~f~e~yla~k~~~~~~ 222 (231)
T COG3148 155 LPVVSLDPERLSAYR-LRKAQAEGQLCTAEVAAALLDMAGD-ERAAEALGKHFDAFKERYLAGKSEHLGE 222 (231)
T ss_pred CCccccCHHHhhHHH-HhhCCCCCceeHHHHHHHHHHHhCC-hhhhHHHHHHHHHHHHHHHhcCcccccc
Confidence 999999999999999 9999999999999999999999986 4667999999999999999999998543
No 3
>KOG4382 consensus Uncharacterized conserved protein, contains DTW domain [Function unknown]
Probab=99.98 E-value=6.2e-34 Score=269.00 Aligned_cols=256 Identities=40% Similarity=0.551 Sum_probs=199.1
Q ss_pred CCCCCCCCCCCCCCCCcccccccccCCCCCCceeEEEEEeCCccccCCCChHHHHhhccCCcEEEEEeecCcceEEEEEe
Q 048101 4 TDAKSKRSICPSCSKPTRLCLCNRIQDPGLENSVSVTILQHSLERNHPLNSTRIAKLGLKNVTVATVFDVNFEARFDIRL 83 (400)
Q Consensus 4 ~~~~~~R~~C~rC~rP~~~ClC~~i~~~pl~~~~~v~ILQHP~E~~halnT~rLl~l~L~n~~Vg~~fdvn~~a~f~~~~ 83 (400)
.|+..||++|+.|.||..+|||..+|.|+.++.++++|||||.|.||+|||+|||.+||.|+ +|||..+++|.++.
T Consensus 14 ~d~~~rR~~C~~CdrP~~lClC~~lp~p~~~~~~~I~ILqHp~E~kh~LnTt~il~lgL~n~----v~~V~~~~~f~~hv 89 (276)
T KOG4382|consen 14 LDMGTRRPTCPSCDRPSQLCLCKKLPSPCFDNQVSITILQHPLERKHALNTTRILRLGLKNV----VFDVHDEAEFLIHV 89 (276)
T ss_pred cCCCcCCCCCCccCCCceeEEecCCCCCCcCCcceEEEeeCchHhhhhcchhhHHHhccccc----eeecccchhhhhee
Confidence 35788999999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred cccccccccCCCCccccceeccccccccCCCCcCCCCccccCCcccccCCCCCCCCCccccc----CCceeecCCCccce
Q 048101 84 TESCQESVDDGFGLKGENVIGLKCKKFKKGFGEEDSSLIDVNKDCCLGNDMSGTLDANSYLK----GSNVVNDFDGLVSV 159 (400)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 159 (400)
..+|+...++- +-..-+ .+-.+|.+-.|+.+.|++ ++|++..++|++..
T Consensus 90 ~~ag~s~i~~~-----p~~~l~----------------------~~~ps~dsv~l~e~~~~~~l~~~~~~~~~p~~ll~i 142 (276)
T KOG4382|consen 90 IGAGCSKIDTN-----PLDSLY----------------------RVEPSDDSVKLGESGNVENLESEKNVVLVPHGLLEI 142 (276)
T ss_pred ccCCccccCCC-----cceeee----------------------ecCCCCCceeeccccccccccccccccCCCceeEEE
Confidence 99987766442 000000 111356666677766555 67789999999888
Q ss_pred ecccCCCCCCCccccccccccceeeecccccccCCCCCCCceeeeecccccccccceeeEEecCC-CCchhhhccChhHH
Q 048101 160 QETEGNGENGTFASETHCCSLFRKYYLGHKAISYGGYGDPTIAVTISKYGVISGLVCNWVLTDCQ-KPNFDQIVGSQVAL 238 (400)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~i~c~c~~~~~~~~~~~~wi~~~~~-~~~f~r~l~~p~~~ 238 (400)
.++.. ..+|.++.+ +.+.|++ + ++..|.+-++.|+-. .|.|.+.+++.+.+..- --.|+.+++.+.+.
T Consensus 143 d~Tw~---~ak~l~~~S-~~~~R~r----~--~i~~~~d~~~~~~vk-~g~I~~s~~~lr~ep~~gclst~e~~A~cla~ 211 (276)
T KOG4382|consen 143 DETWN---LAKHLSEIS-YRDSRVR----D--KISYEEDLIKICMVK-HGVISNSSHSLRLEPNVGCLSTDEILASCLAM 211 (276)
T ss_pred ccchH---HHHHHHhhc-HHHHhhh----h--hhhhhhhhhhhhhhc-ceeEeeceeEEEecCCCccchHHHHHHHHHHH
Confidence 76643 346777776 5555552 1 223455556666654 88898888888864311 22599999999999
Q ss_pred HhhhcCceeeecchhhcccccCcccchhhhcccCCCeEEEcCCCCCCCchhhhhc-ccceeeEEEEcCchhhHH
Q 048101 239 DALEKGFVVKKMGKRELDGNLESEEYEEYKLEVSPGSVLLFPSENAVGVDDLKAM-NFEVKNLIVLDGTWSKAK 311 (400)
Q Consensus 239 e~~~~gf~~~k~~~~~l~~~~~~~e~e~f~i~~~~~tvLLFPse~A~~leel~~~-~~k~~~LIVIDGTWrQAk 311 (400)
.-+++|||+|||. |+-++|+++++++++++||++.......+... ..+-+++|+.||||.|++
T Consensus 212 ~e~~~~~~~t~~~----------~~~~~~e~e~~~gsvl~~~~ef~~K~n~~~kp~~k~l~~l~~n~~~~~~ee 275 (276)
T KOG4382|consen 212 DELAKGFMVTKFS----------EGKQEFELEVPPGSVLLFPSEFSVKINYLKKPEEKKLRNLIVNDGTWSKEE 275 (276)
T ss_pred Hhhcchhheeccc----------cCCcceeEecCCchhhhhhHHHHHhhcccCCchhHHHHHHHhhcCcccccc
Confidence 9999999999998 67788899999999999999977665444321 233468999999999875
No 4
>KOG4382 consensus Uncharacterized conserved protein, contains DTW domain [Function unknown]
Probab=99.35 E-value=2.1e-12 Score=123.49 Aligned_cols=162 Identities=19% Similarity=0.177 Sum_probs=115.8
Q ss_pred CCCCCCceeeeeccccc--ccccceeeEEecCCCCchhhhccChhHHHh-hhcC-ceeeecchhhcccccCcccchhhhc
Q 048101 194 GGYGDPTIAVTISKYGV--ISGLVCNWVLTDCQKPNFDQIVGSQVALDA-LEKG-FVVKKMGKRELDGNLESEEYEEYKL 269 (400)
Q Consensus 194 ~~c~~p~i~c~c~~~~~--~~~~~~~wi~~~~~~~~f~r~l~~p~~~e~-~~~g-f~~~k~~~~~l~~~~~~~e~e~f~i 269 (400)
.+|..|..-|.|-+++. +.+..-|-|++| +-|-.+.|........ |.++ |.| ..++.+-...+.-+.+. |
T Consensus 24 ~~CdrP~~lClC~~lp~p~~~~~~~I~ILqH--p~E~kh~LnTt~il~lgL~n~v~~V--~~~~~f~~hv~~ag~s~--i 97 (276)
T KOG4382|consen 24 PSCDRPSQLCLCKKLPSPCFDNQVSITILQH--PLERKHALNTTRILRLGLKNVVFDV--HDEAEFLIHVIGAGCSK--I 97 (276)
T ss_pred CccCCCceeEEecCCCCCCcCCcceEEEeeC--chHhhhhcchhhHHHhccccceeec--ccchhhhheeccCCccc--c
Confidence 36788999999998876 668889999999 7666666555444321 2222 111 11223333444445443 3
Q ss_pred ccCCCeEEEc--CCCCCCCchhhhhc---------ccceeeEEEEcCchhhHHHhhhhCCCCCCCC-------------e
Q 048101 270 EVSPGSVLLF--PSENAVGVDDLKAM---------NFEVKNLIVLDGTWSKAKRMYKENPWLKLLP-------------H 325 (400)
Q Consensus 270 ~~~~~tvLLF--Pse~A~~leel~~~---------~~k~~~LIVIDGTWrQAkkM~r~sP~L~~LP-------------~ 325 (400)
--++-.++++ |+.+|.++++...- ...+.++|+||+||++|+.|+..++.+.++. .
T Consensus 98 ~~~p~~~l~~~~ps~dsv~l~e~~~~~~l~~~~~~~~~p~~ll~id~Tw~~ak~l~~~S~~~~R~r~~i~~~~d~~~~~~ 177 (276)
T KOG4382|consen 98 DTNPLDSLYRVEPSDDSVKLGESGNVENLESEKNVVLVPHGLLEIDETWNLAKHLSEISYRDSRVRDKISYEEDLIKICM 177 (276)
T ss_pred CCCcceeeeecCCCCCceeeccccccccccccccccCCCceeEEEccchHHHHHHHhhcHHHHhhhhhhhhhhhhhhhhh
Confidence 4455667777 78899888665311 2335789999999999999999999877776 5
Q ss_pred EEecCCCCccccccccCCCCCCccHHHHHHHHHHHcC
Q 048101 326 LKLDLDKMSLYSEVRHQPKAGYLSTIESTVYTLMALG 362 (400)
Q Consensus 326 VsL~~~~~S~Y~~IRkQp~~g~LSTIEAia~aL~~Lg 362 (400)
|+......|.|. ||.||..|||||.|++|..|..++
T Consensus 178 vk~g~I~~s~~~-lr~ep~~gclst~e~~A~cla~~e 213 (276)
T KOG4382|consen 178 VKHGVISNSSHS-LRLEPNVGCLSTDEILASCLAMDE 213 (276)
T ss_pred hcceeEeeceeE-EEecCCCccchHHHHHHHHHHHHh
Confidence 666666778997 999999999999999999998886
No 5
>PRK02287 hypothetical protein; Provisional
Probab=99.27 E-value=1.3e-11 Score=113.77 Aligned_cols=114 Identities=25% Similarity=0.329 Sum_probs=88.3
Q ss_pred CCeEEEcCC-CCCCCchhhhhcccceeeEEEEcCchhhHHHhhhhCCC--CCCCCeEEecCCCCccccccccCCCCCCcc
Q 048101 273 PGSVLLFPS-ENAVGVDDLKAMNFEVKNLIVLDGTWSKAKRMYKENPW--LKLLPHLKLDLDKMSLYSEVRHQPKAGYLS 349 (400)
Q Consensus 273 ~~tvLLFPs-e~A~~leel~~~~~k~~~LIVIDGTWrQAkkM~r~sP~--L~~LP~VsL~~~~~S~Y~~IRkQp~~g~LS 349 (400)
.+.+||-|. +..++.+|..- .....|+||||||+++.+|....+. -+.||.+ -+.++.+|+ ++..||
T Consensus 39 ~g~IvL~P~a~~~lSp~D~~~--~~~~Gi~vlDcSW~~~~~~~~~~~~~~~R~LP~L--vAaNPvNYG------kp~kLs 108 (171)
T PRK02287 39 RGSIVLNPFAEKALSPADRDI--VEKRGIVALDCSWNEAERVFFKLLRGHHRRLPFL--VAANPVNYG------KPFKLS 108 (171)
T ss_pred CCeEEECCCCCcCcCHHHHHh--hhhCCEEEEECCHHHHhhhhhhccCCCcccCccc--cccCCCcCC------Cccccc
Confidence 456999996 46666665421 2346899999999999999886543 2566664 378999998 799999
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Q 048101 350 TIESTVYTLMALGDNTERLNNLLDVFESMVGDQRRCKDERLSKVSHCET 398 (400)
Q Consensus 350 TIEAia~aL~~Lge~~e~~d~LL~~F~~Mv~~Q~~~k~e~l~~~~~~~~ 398 (400)
|+||+|.+|.++|. .+..+.||..|+|+.+ -++...|.|+.-..|.|
T Consensus 109 ~vEAlAaaLyI~G~-~~~A~~ll~~F~WG~~-Fl~lN~elLe~Y~~~~~ 155 (171)
T PRK02287 109 SVEALAAALYILGF-KEEAEKILSKFKWGHT-FLELNKEPLEAYARAKD 155 (171)
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHhhCCChHH-HHHHHHHHHHHHHccCC
Confidence 99999999999987 4667999999999876 46677777777666654
No 6
>KOG3795 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=7.3e-12 Score=116.21 Aligned_cols=100 Identities=27% Similarity=0.448 Sum_probs=80.3
Q ss_pred CcccchhhhcccCCCeEEEcCCCCCCCchhhhhcccceeeEEEEcCchhhHHHhhhhCCCCCCCCeEEecCCCCcccccc
Q 048101 260 ESEEYEEYKLEVSPGSVLLFPSENAVGVDDLKAMNFEVKNLIVLDGTWSKAKRMYKENPWLKLLPHLKLDLDKMSLYSEV 339 (400)
Q Consensus 260 ~~~e~e~f~i~~~~~tvLLFPse~A~~leel~~~~~k~~~LIVIDGTWrQAkkM~r~sP~L~~LP~VsL~~~~~S~Y~~I 339 (400)
+.|+|++=.=-..-.|.|.||+..|.++++...+.+.++++++||+||.|.+-|+. .|..+.|.+|+|.. ..|.| |
T Consensus 85 ~IPdY~~~~~~~~~~ta~~~p~~~a~~v~~~i~~~gpi~r~v~~d~tw~q~~~~~~-~~~i~gl~~v~lq~-~~s~f--w 160 (230)
T KOG3795|consen 85 NIPDYSQDSEDERQGTAIIFPSKSAISVEEFVKTRGPIKRIVVLDCTWFQVGVMQK-TPQIQGLQHVSLQS-YRTAF--W 160 (230)
T ss_pred CCcchhhcCCceEEEEEEeechhhhhhHHHHhccCCCeeEEEEEeceehhhcceec-Cccccceeeeehhh-HHHHh--c
Confidence 34666542111123589999999999998776556778999999999999999986 89999999999974 67888 5
Q ss_pred ccCC--CCCCccHHHHHHHHHHHcCC
Q 048101 340 RHQP--KAGYLSTIESTVYTLMALGD 363 (400)
Q Consensus 340 RkQp--~~g~LSTIEAia~aL~~Lge 363 (400)
|+|. .+.+|+|||||++.|.++.+
T Consensus 161 r~q~~~p~~~latieai~~~l~e~~~ 186 (230)
T KOG3795|consen 161 RPQHNVPETGLATIEAIYYSLREYQE 186 (230)
T ss_pred ccccCCchhhHhHHHHHHHHHHHHHH
Confidence 8886 47999999999999998754
No 7
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=98.98 E-value=7.4e-10 Score=97.88 Aligned_cols=111 Identities=25% Similarity=0.338 Sum_probs=83.0
Q ss_pred EEEcCCC-CCCCchhhhhcccceeeEEEEcCchhhHHHhhhhC--CCCCCCCeEEecCCCCccccccccCCCCCCccHHH
Q 048101 276 VLLFPSE-NAVGVDDLKAMNFEVKNLIVLDGTWSKAKRMYKEN--PWLKLLPHLKLDLDKMSLYSEVRHQPKAGYLSTIE 352 (400)
Q Consensus 276 vLLFPse-~A~~leel~~~~~k~~~LIVIDGTWrQAkkM~r~s--P~L~~LP~VsL~~~~~S~Y~~IRkQp~~g~LSTIE 352 (400)
+||-|.. ..++.+|..- -....+.|||++|+++..+|.+. +.-+.||.+ -+.+|.+|+ ++..|||+|
T Consensus 1 ivLsP~~~~~lSp~Dr~i--v~~~Gi~viDCSW~~l~~~f~k~~~~~~R~LP~L--vAaNPVNYG------kP~kLscvE 70 (127)
T PF04034_consen 1 IVLSPFATKYLSPADREI--VEKSGIAVIDCSWNRLDEVFKKLRSRNHRLLPYL--VAANPVNYG------KPCKLSCVE 70 (127)
T ss_pred CeeCCCCCcccCHHHHHH--HHHCCEEEEECcHHHHHHHHHhcCCCCCccCchh--hccCCcccC------CcccccHHH
Confidence 3666743 4455554321 12358999999999999987654 445888886 578999999 899999999
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Q 048101 353 STVYTLMALGDNTERLNNLLDVFESMVGDQRRCKDERLSKVSHCET 398 (400)
Q Consensus 353 Aia~aL~~Lge~~e~~d~LL~~F~~Mv~~Q~~~k~e~l~~~~~~~~ 398 (400)
|+|.+|.++|.. +..+.||..|+|.-. -++...|.|+.-..|.|
T Consensus 71 AlAAaLyI~G~~-~~A~~lL~~FkWG~~-F~~LN~elLe~Y~~~~~ 114 (127)
T PF04034_consen 71 ALAAALYILGFK-EQAEELLSKFKWGHT-FLELNKELLEAYAKCKT 114 (127)
T ss_pred HHHHHHHHcCCH-HHHHHHHhcCCCcHH-HHHHHHHHHHHHHcCCC
Confidence 999999999974 667889999998866 45566666666666654
No 8
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=2.9e-09 Score=98.05 Aligned_cols=111 Identities=25% Similarity=0.294 Sum_probs=87.5
Q ss_pred eEEEcCCC-CCCCchhhhhcccceeeEEEEcCchhhHHHhhhhCCC--CCCCCeEEecCCCCccccccccCCCCCCccHH
Q 048101 275 SVLLFPSE-NAVGVDDLKAMNFEVKNLIVLDGTWSKAKRMYKENPW--LKLLPHLKLDLDKMSLYSEVRHQPKAGYLSTI 351 (400)
Q Consensus 275 tvLLFPse-~A~~leel~~~~~k~~~LIVIDGTWrQAkkM~r~sP~--L~~LP~VsL~~~~~S~Y~~IRkQp~~g~LSTI 351 (400)
.+||-|.. .+++.+|..- .....+.+|||+|.++.++|...+. -+.||.+ -+.+|.+|+ ++..|||+
T Consensus 49 ~vvL~P~ae~~lSp~D~~i--ver~Gi~vvdcSW~~~~~~f~~l~~~~~R~LP~L--vAaNPVNYG------kp~kLss~ 118 (179)
T COG2042 49 GVVLTPFAEKALSPADRDI--VERFGITVVDCSWNRVERVFKKLRGREHRRLPFL--VAANPVNYG------KPFKLSSA 118 (179)
T ss_pred eeEECCCcccccChhhHHH--HHhcCeEEEEccHHHHHHHHHhcCccccccccHh--hhcCCcccC------CcchhchH
Confidence 48999966 5666655421 2246899999999999999887654 4778876 478999999 89999999
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q 048101 352 ESTVYTLMALGDNTERLNNLLDVFESMVGDQRRCKDERLSKVSHCE 397 (400)
Q Consensus 352 EAia~aL~~Lge~~e~~d~LL~~F~~Mv~~Q~~~k~e~l~~~~~~~ 397 (400)
||.+.+|.++|.. +.+..|++.|+|... -++...|.|+.-+.|+
T Consensus 119 EAlaAaLYI~G~~-deA~~lls~F~WG~~-FleLN~e~Le~Y~~a~ 162 (179)
T COG2042 119 EALAAALYIVGFK-DEASELLSKFKWGHT-FLELNKELLEEYSNAE 162 (179)
T ss_pred HHHHHHHHHhCcH-HHHHHHHhhCcccHH-HHHHhHHHHHHHHhcc
Confidence 9999999999874 556899999999876 4667777777666554
No 9
>KOG3154 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.0026 Score=61.76 Aligned_cols=109 Identities=23% Similarity=0.304 Sum_probs=71.7
Q ss_pred EEEcCCC-CCCCchhhhhcccceeeEEEEcCchhhHHHh-hhhC--CCCCCCCeEEecCCCCccccccccCCCCCCccHH
Q 048101 276 VLLFPSE-NAVGVDDLKAMNFEVKNLIVLDGTWSKAKRM-YKEN--PWLKLLPHLKLDLDKMSLYSEVRHQPKAGYLSTI 351 (400)
Q Consensus 276 vLLFPse-~A~~leel~~~~~k~~~LIVIDGTWrQAkkM-~r~s--P~L~~LP~VsL~~~~~S~Y~~IRkQp~~g~LSTI 351 (400)
+||-|.. -.++..|..- .+...+-|||++|.+-..+ |.+. +-.+-||.+ .+.++.+|+ ++..|+-+
T Consensus 81 vVlSP~gk~~vsp~D~d~--v~~~G~avvdCSWArLdevpF~kl~~~h~RLLP~l--VAANpVNYG------rP~rLnCv 150 (263)
T KOG3154|consen 81 VVLSPVGKQCVSPADRDV--VERSGAAVVDCSWARLDEVPFGKLRGRHERLLPYL--VAANPVNYG------RPWRLNCV 150 (263)
T ss_pred eEECCCCCcccCHHHHHH--HHhcCceEEecchhhccccchhhcCCCcccccchh--hhcCccccC------CCceecHH
Confidence 7888854 4445444321 2235788999999886543 2221 223556765 467899999 79999999
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q 048101 352 ESTVYTLMALGDNTERLNNLLDVFESMVGDQRRCKDERLSKVSHC 396 (400)
Q Consensus 352 EAia~aL~~Lge~~e~~d~LL~~F~~Mv~~Q~~~k~e~l~~~~~~ 396 (400)
||++++|.+.|. ++.+..||.-|+|.... ++...+-|.....|
T Consensus 151 EAlaA~l~I~G~-~e~A~~lL~~F~wG~~F-l~lN~~lLd~Ya~C 193 (263)
T KOG3154|consen 151 EALAACLYICGF-PEEARELLDKFKWGHAF-LELNKDLLDEYAKC 193 (263)
T ss_pred HHHHhHeeeecC-hhHHHHHHhcCcchHHH-HHHhHHHHHHHHhh
Confidence 999999999987 45568888888876552 33333333333333
No 10
>PF03942 DTW: DTW domain; InterPro: IPR005636 This presumed domain is found in bacterial and eukaryotic proteins. Its function is unknown. The domain contains multiple conserved motifs including a DTXW motif that this domain has been named after.
Probab=91.57 E-value=0.11 Score=48.27 Aligned_cols=38 Identities=8% Similarity=-0.134 Sum_probs=34.7
Q ss_pred CCCCCCceeeeecccccccccceeeEEecCCCCchhhhcc
Q 048101 194 GGYGDPTIAVTISKYGVISGLVCNWVLTDCQKPNFDQIVG 233 (400)
Q Consensus 194 ~~c~~p~i~c~c~~~~~~~~~~~~wi~~~~~~~~f~r~l~ 233 (400)
.+|++|...|.|+-.+++....+|||+|| ++|+.+.++
T Consensus 6 ~~C~~~~~~C~C~~~~~v~~~~~v~iL~H--p~E~~~~~n 43 (203)
T PF03942_consen 6 PRCWRPLSLCICSLIPPVELPTRVVILQH--PKERKRASN 43 (203)
T ss_pred cCCCCccccCCCcCCCCCCCCcEEEEEEC--chhhhcccC
Confidence 48999999999999999999999999999 999888753
No 11
>COG3148 Uncharacterized conserved protein [Function unknown]
Probab=45.18 E-value=13 Score=36.55 Aligned_cols=35 Identities=6% Similarity=-0.160 Sum_probs=30.7
Q ss_pred ccCCCCCCCceeeeecccccccccceeeEEecCCC
Q 048101 191 ISYGGYGDPTIAVTISKYGVISGLVCNWVLTDCQK 225 (400)
Q Consensus 191 ~~~~~c~~p~i~c~c~~~~~~~~~~~~wi~~~~~~ 225 (400)
..-+.|++|..-|.|+..+++...++|.++||.++
T Consensus 28 ~rC~~C~l~~~~CLCa~ip~~ea~~~~~Ll~hdtE 62 (231)
T COG3148 28 RRCQRCLLPEKHCLCATIPPLEARSRFCLLMHDTE 62 (231)
T ss_pred hhhhhhCChhhhccccCcCCcccceeEEEEecCcc
Confidence 34478999999999999999999999999999553
No 12
>PF09282 Mago-bind: Mago binding; InterPro: IPR015362 Members of this family adopt a structure consisting of a small globular all-beta-domain, with a three-stranded beta-sheet and a contiguous beta-hairpin. They bind to Mago alpha-helices via extensive electrostatic interactions and at a beta2-beta3 loop via hydrophobic interactions []. ; GO: 0005515 protein binding; PDB: 1RK8_C.
Probab=40.90 E-value=4.3 Score=27.61 Aligned_cols=11 Identities=55% Similarity=0.996 Sum_probs=5.7
Q ss_pred EcCchhhHHHh
Q 048101 303 LDGTWSKAKRM 313 (400)
Q Consensus 303 IDGTWrQAkkM 313 (400)
-||||+++.++
T Consensus 11 pDGt~RK~irv 21 (27)
T PF09282_consen 11 PDGTWRKEIRV 21 (27)
T ss_dssp TTS-EE--EE-
T ss_pred CCCCcccceec
Confidence 49999998765
No 13
>PRK06824 translation initiation factor Sui1; Validated
Probab=22.57 E-value=67 Score=28.67 Aligned_cols=24 Identities=29% Similarity=0.984 Sum_probs=19.0
Q ss_pred CCCCCCCCCCCcccccccccCCCC
Q 048101 9 KRSICPSCSKPTRLCLCNRIQDPG 32 (400)
Q Consensus 9 ~R~~C~rC~rP~~~ClC~~i~~~p 32 (400)
.-.+|+.|..|...|.|.-...|+
T Consensus 15 ~g~~c~~cg~~~~~C~C~~~~~~~ 38 (118)
T PRK06824 15 HGRHCPDCGQPVAACICKQAAAPA 38 (118)
T ss_pred CCccCcccCCchhhhccccccCCC
Confidence 346899999999999998664443
No 14
>PF08803 ydhR: Putative mono-oxygenase ydhR; InterPro: IPR014910 YdhR is a homodimeric protein that comprises of a central four-stranded beta sheet and four surrounding alpha helices []. It shows structural homology to the ActVA-Orf6 and YgiN proteins which indicates it could be a mono-oxygenase. ; PDB: 1WD6_B 2HIQ_B 2ASY_B.
Probab=21.50 E-value=72 Score=27.66 Aligned_cols=40 Identities=18% Similarity=0.411 Sum_probs=23.3
Q ss_pred eeEEEEEeCCccc--cCCCChHHHHhhccCCcEEEEEeecCcc
Q 048101 36 SVSVTILQHSLER--NHPLNSTRIAKLGLKNVTVATVFDVNFE 76 (400)
Q Consensus 36 ~~~v~ILQHP~E~--~halnT~rLl~l~L~n~~Vg~~fdvn~~ 76 (400)
..+|++...-.-+ =..+-++||...|+.+++ +.+||||..
T Consensus 47 aGGiYLFe~e~~A~aY~~~h~aRl~~~Gv~~i~-~kiFdvn~~ 88 (97)
T PF08803_consen 47 AGGIYLFEDEASAEAYLEMHTARLAAFGVTEIR-GKIFDVNEP 88 (97)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHGGGTSS--E-EEEEEE-HH
T ss_pred cceEEEECCHHHHHHHHHHHHHHHHhcCccceE-EEEEeccCc
Confidence 3455555443222 122339999999998876 688999953
No 15
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.20 E-value=42 Score=26.03 Aligned_cols=21 Identities=43% Similarity=0.808 Sum_probs=14.0
Q ss_pred CCCCCCC--CCCCCCCCCCCCcc
Q 048101 1 MAATDAK--SKRSICPSCSKPTR 21 (400)
Q Consensus 1 ~~~~~~~--~~R~~C~rC~rP~~ 21 (400)
|||.-++ .+-.+||.|+||-+
T Consensus 1 ma~~r~Ka~lp~KICpvCqRPFs 23 (54)
T COG4338 1 MAARRPKATLPDKICPVCQRPFS 23 (54)
T ss_pred CCccCcccccchhhhhhhcCchH
Confidence 5554432 35678999999953
No 16
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=21.20 E-value=39 Score=28.76 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=26.3
Q ss_pred CCCeEEEcCCCCCCCchhhhhcc------cceeeEEEEcCchhhH
Q 048101 272 SPGSVLLFPSENAVGVDDLKAMN------FEVKNLIVLDGTWSKA 310 (400)
Q Consensus 272 ~~~tvLLFPse~A~~leel~~~~------~k~~~LIVIDGTWrQA 310 (400)
..+|+.+=|...+.++..+.+.. .....++++||+|+|-
T Consensus 14 t~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qL 58 (87)
T cd01776 14 TGKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQL 58 (87)
T ss_pred eeeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEc
Confidence 35678888888776665443321 2245788999999874
No 17
>KOG3795 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.06 E-value=1.3e+02 Score=29.06 Aligned_cols=68 Identities=26% Similarity=0.517 Sum_probs=42.0
Q ss_pred CCCCCCCCCCCCCCCcc-cccccccCC-------CCCCceeEEEEEeCCccccCCCChHHHHhh-ccCCcEEEEEeec
Q 048101 5 DAKSKRSICPSCSKPTR-LCLCNRIQD-------PGLENSVSVTILQHSLERNHPLNSTRIAKL-GLKNVTVATVFDV 73 (400)
Q Consensus 5 ~~~~~R~~C~rC~rP~~-~ClC~~i~~-------~pl~~~~~v~ILQHP~E~~halnT~rLl~l-~L~n~~Vg~~fdv 73 (400)
|+-++|..|+.|.+-.. -|+=.++|. |.+.--..|=|+-||.|..- ++||-=|.+ +=..+.|-+..|+
T Consensus 10 d~ieGRs~C~~C~~SRkFfCY~C~VPV~vp~E~~P~vkLPL~vDIIKHp~E~DG-KSsAiHAkiLAP~~VrI~TyP~I 86 (230)
T KOG3795|consen 10 DPIEGRSTCPGCKSSRKFFCYDCRVPVPVPGEFTPTVKLPLAVDIIKHPMEKDG-KSSALHAKILAPDQVRIFTYPNI 86 (230)
T ss_pred CcccccccCCCCCCcceEEEEeeccccCcchhcccccccceeeeeecCccccCC-chhhhhhhhcCcceeeeeccCCC
Confidence 46679999999988654 466566653 22333467889999999843 344433332 2233556555554
No 18
>PRK00939 translation initiation factor Sui1; Reviewed
Probab=21.06 E-value=96 Score=26.67 Aligned_cols=19 Identities=42% Similarity=1.282 Sum_probs=17.6
Q ss_pred CCCCCCCCCcccccccccC
Q 048101 11 SICPSCSKPTRLCLCNRIQ 29 (400)
Q Consensus 11 ~~C~rC~rP~~~ClC~~i~ 29 (400)
.+|+.|.-|...|.|.-++
T Consensus 2 ~~c~~c~~~~~~c~c~~~~ 20 (99)
T PRK00939 2 EICPVCGLPKELCVCEEVA 20 (99)
T ss_pred CcCccCCCCHHHccCcccC
Confidence 5899999999999999984
Done!