Query 048101
Match_columns 400
No_of_seqs 215 out of 709
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 10:38:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3utn_X Thiosulfate sulfurtrans 27.4 53 0.0018 31.9 4.3 60 297-363 44-110 (327)
2 1rk8_C PYM protein, within the 26.7 5.3 0.00018 30.5 -2.2 12 303-314 19-30 (58)
3 2dof_A Transcription elongatio 25.0 29 0.001 28.3 1.7 16 304-319 35-50 (85)
4 2ot9_A Hypothetical protein; Y 23.4 23 0.00077 32.5 0.8 29 35-64 23-51 (180)
5 2g3w_A YAEQ protein, hypotheti 22.0 25 0.00085 32.2 0.8 29 35-64 23-51 (182)
6 3c0u_A Uncharacterized protein 21.4 26 0.00089 32.1 0.8 29 35-64 25-53 (183)
7 4bbk_A Kindlin-1, fermitin fam 19.2 46 0.0016 30.1 1.9 57 37-108 55-112 (165)
8 4f7h_A Fermitin family homolog 11.9 93 0.0032 28.3 1.9 45 37-87 76-121 (173)
9 2hiq_A Hypothetical protein YD 9.7 1.6E+02 0.0054 25.0 2.5 22 54-76 77-98 (113)
10 1zfo_A LAsp-1; LIM domain, zin 7.6 1.5E+02 0.0051 19.0 1.1 12 9-20 2-13 (31)
No 1
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=27.41 E-value=53 Score=31.88 Aligned_cols=60 Identities=22% Similarity=0.363 Sum_probs=35.1
Q ss_pred eeeEEEEcCchh------hHHHhhhhCCCCCCCCe-EEecCCCCccccccccCCCCCCccHHHHHHHHHHHcCC
Q 048101 297 VKNLIVLDGTWS------KAKRMYKENPWLKLLPH-LKLDLDKMSLYSEVRHQPKAGYLSTIESTVYTLMALGD 363 (400)
Q Consensus 297 ~~~LIVIDGTWr------QAkkM~r~sP~L~~LP~-VsL~~~~~S~Y~~IRkQp~~g~LSTIEAia~aL~~Lge 363 (400)
..++|+||+||. .+++=|..- ..+|- +.+.-+. +. =...|-++-|-+.|..+.+|..+|-
T Consensus 44 ~~rvv~lDasw~lP~~~r~~~~E~~~~---~HIPGAv~~Dld~---~~-d~~~~~ph~LP~~~~f~~~l~~lGI 110 (327)
T 3utn_X 44 VHRIVPVDATWYLPSWKLDNKVDFLTK---PRIPNSIFFDIDA---IS-DKKSPYPHMFPTKKVFDDAMSNLGV 110 (327)
T ss_dssp SSCEEEEECCCCCGGGCCCHHHHHHHS---CBCTTCEECCTTT---SS-CTTSSSTTCCCCHHHHHHHHHHTTC
T ss_pred CCcEEEEEecCCCCCCCCCHHHHHHhh---CcCCCCeeeChHH---hc-CCCCCCCCCCcCHHHHHHHHHHcCC
Confidence 357999999993 444433211 23342 3222211 11 1223346778999999999999974
No 2
>1rk8_C PYM protein, within the BGCN gene intron protein, CG30176-PA; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: b.72.3.1
Probab=26.70 E-value=5.3 Score=30.51 Aligned_cols=12 Identities=58% Similarity=1.055 Sum_probs=10.1
Q ss_pred EcCchhhHHHhh
Q 048101 303 LDGTWSKAKRMY 314 (400)
Q Consensus 303 IDGTWrQAkkM~ 314 (400)
-||||+++.++-
T Consensus 19 pDGT~RK~irVr 30 (58)
T 1rk8_C 19 PDGTWRKARRVK 30 (58)
T ss_dssp TTSCEECCEECC
T ss_pred CCCccccceecc
Confidence 499999998874
No 3
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=24.97 E-value=29 Score=28.26 Aligned_cols=16 Identities=25% Similarity=0.638 Sum_probs=14.5
Q ss_pred cCchhhHHHhhhhCCC
Q 048101 304 DGTWSKAKRMYKENPW 319 (400)
Q Consensus 304 DGTWrQAkkM~r~sP~ 319 (400)
|-||.+|++++++.|.
T Consensus 35 d~sW~Eakr~LrKD~R 50 (85)
T 2dof_A 35 DVSWSDTRRTLRKDHR 50 (85)
T ss_dssp SCCHHHHHHHHHHSST
T ss_pred CCCHHHHHHHhccCcc
Confidence 8999999999998873
No 4
>2ot9_A Hypothetical protein; YAEQ protein, PSI-2, protein structure initiative, MCSG, structural genomics, midwest center for S genomics; HET: SRT; 1.97A {Pseudomonas syringae PV} SCOP: c.52.1.33
Probab=23.40 E-value=23 Score=32.47 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=24.1
Q ss_pred ceeEEEEEeCCccccCCCChHHHHhhccCC
Q 048101 35 NSVSVTILQHSLERNHPLNSTRIAKLGLKN 64 (400)
Q Consensus 35 ~~~~v~ILQHP~E~~halnT~rLl~l~L~n 64 (400)
-...++|=|||+|...-+ -+|||+-+|.-
T Consensus 23 ~~~~LTlArHPSET~eRm-M~RlLAfal~a 51 (180)
T 2ot9_A 23 ESVKQTIARHPSETEERM-TVRLLAYAFWY 51 (180)
T ss_dssp EEEEEEEEECTTSCHHHH-HHHHHHHHHTC
T ss_pred cchheeeecCCCccHHHH-HHHHHHHHhcc
Confidence 357899999999997666 79999999853
No 5
>2g3w_A YAEQ protein, hypothetical protein XAC2396; xanthomonas axonopodis PV citri, unknown funct; HET: MSE; 1.90A {Xanthomonas axonopodis PV} SCOP: c.52.1.33
Probab=22.02 E-value=25 Score=32.23 Aligned_cols=29 Identities=28% Similarity=0.348 Sum_probs=23.9
Q ss_pred ceeEEEEEeCCccccCCCChHHHHhhccCC
Q 048101 35 NSVSVTILQHSLERNHPLNSTRIAKLGLKN 64 (400)
Q Consensus 35 ~~~~v~ILQHP~E~~halnT~rLl~l~L~n 64 (400)
-...++|=|||+|...-+ =+|||+-+|.-
T Consensus 23 ~~~~LTlArHPSET~eRm-M~RlLAfal~a 51 (182)
T 2g3w_A 23 ANHSLTLAQHPSETDERL-MVRLLAFALFA 51 (182)
T ss_dssp EEEEEEEEECTTCCHHHH-HHHHHHHHHTC
T ss_pred cchheeeecCCCccHHHH-HHHHHHHHhcc
Confidence 357899999999996666 78999999843
No 6
>3c0u_A Uncharacterized protein YAEQ; PSI-2, protein structure initiative, center for structural genomics, MCSG, structural genomics, function; 2.70A {Escherichia coli}
Probab=21.43 E-value=26 Score=32.13 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=23.9
Q ss_pred ceeEEEEEeCCccccCCCChHHHHhhccCC
Q 048101 35 NSVSVTILQHSLERNHPLNSTRIAKLGLKN 64 (400)
Q Consensus 35 ~~~~v~ILQHP~E~~halnT~rLl~l~L~n 64 (400)
-...++|=|||+|...-+ =+|||+-+|.-
T Consensus 25 ~~~~LTlArHPSET~eRm-M~RlLAfal~a 53 (183)
T 3c0u_A 25 LDASLTLARHPSETQERM-MLRLLAWLKYA 53 (183)
T ss_dssp EEEEEEEEECTTSCHHHH-HHHHHHHHHTC
T ss_pred cchheeeecCCCccHHHH-HHHHHHHHhcc
Confidence 357899999999996666 78999999843
No 7
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=19.22 E-value=46 Score=30.09 Aligned_cols=57 Identities=28% Similarity=0.459 Sum_probs=42.9
Q ss_pred eEEEEEeCCccccCCCChHHHHhhccCCcEEEEEeecCc-ceEEEEEecccccccccCCCCccccceeccccc
Q 048101 37 VSVTILQHSLERNHPLNSTRIAKLGLKNVTVATVFDVNF-EARFDIRLTESCQESVDDGFGLKGENVIGLKCK 108 (400)
Q Consensus 37 ~~v~ILQHP~E~~halnT~rLl~l~L~n~~Vg~~fdvn~-~a~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (400)
+.+.....+.|+. ..++-.+.|++|+| ++|||- ..+|.|+++.+.. .|.+.+-|+||
T Consensus 55 t~LsyYKSkEe~~----geP~~~inLrGCEV--tPDVnva~~Kf~ikL~ip~~---------~gm~e~~Lrcd 112 (165)
T 4bbk_A 55 TSIAYFKNKELEQ----GEPIEKLNLRGCEI--VPDVNVSGRKFGIKLLIPVA---------DGMNEVYLRCD 112 (165)
T ss_dssp TEEEEESSGGGTT----SCCSEEEECTTCEE--EEEEETTTTEEEEEEEEEET---------TEEEEEEEEES
T ss_pred CEEEEEcCHHHhc----CCCceEEecCccEE--ecccccccceeeEEEecCCC---------CcceeeeeecC
Confidence 4577888888874 56777889999996 689995 8899999988731 24566666665
No 8
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*
Probab=11.93 E-value=93 Score=28.30 Aligned_cols=45 Identities=24% Similarity=0.381 Sum_probs=34.1
Q ss_pred eEEEEEeCCccccCCCChHHHHhhccCCcEEEEEeecCc-ceEEEEEecccc
Q 048101 37 VSVTILQHSLERNHPLNSTRIAKLGLKNVTVATVFDVNF-EARFDIRLTESC 87 (400)
Q Consensus 37 ~~v~ILQHP~E~~halnT~rLl~l~L~n~~Vg~~fdvn~-~a~f~~~~~~~~ 87 (400)
+.+.....+.|+. ..++-...|++|+| ++|||. ..+|.|+++.|.
T Consensus 76 ~~LsyYKskEe~~----geP~~~I~LrGCEV--tpDVnva~~Kf~IkL~vP~ 121 (173)
T 4f7h_A 76 TSISCYKSKEESS----GTPAHQMNLRGCEV--TPDVNISGQKFNIKLLIPV 121 (173)
T ss_dssp TEEEEESCGGGCS----SCCSEEEECTTCEE--EEEEETTTTEEEEEEEEEE
T ss_pred CEEEEEcCHhHhc----CCCceEEecCceEE--eccccccccceeEEEeccC
Confidence 3567777777763 35566778999997 688987 667999999984
No 9
>2hiq_A Hypothetical protein YDHR; hypothetical protein JW1657, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: d.58.4.12 PDB: 1wd6_A
Probab=9.68 E-value=1.6e+02 Score=25.00 Aligned_cols=22 Identities=45% Similarity=0.732 Sum_probs=18.6
Q ss_pred hHHHHhhccCCcEEEEEeecCcc
Q 048101 54 STRIAKLGLKNVTVATVFDVNFE 76 (400)
Q Consensus 54 T~rLl~l~L~n~~Vg~~fdvn~~ 76 (400)
++||..+|+.+++ +..||||..
T Consensus 77 ~arl~~~Gi~~i~-~kiFdin~~ 98 (113)
T 2hiq_A 77 TARLKNLGVEEVV-AKVFDVNEP 98 (113)
T ss_dssp HHHHGGGTCCCCE-EEEEEECHH
T ss_pred HHHHHHcCCcceE-EEEEecccc
Confidence 7899999998876 589999953
No 10
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=7.57 E-value=1.5e+02 Score=18.96 Aligned_cols=12 Identities=25% Similarity=0.573 Sum_probs=7.8
Q ss_pred CCCCCCCCCCCc
Q 048101 9 KRSICPSCSKPT 20 (400)
Q Consensus 9 ~R~~C~rC~rP~ 20 (400)
+-+.|++|.++-
T Consensus 2 m~~~C~~C~k~V 13 (31)
T 1zfo_A 2 MNPNCARCGKIV 13 (31)
T ss_dssp CCCBCSSSCSBC
T ss_pred CCCcCCccCCEE
Confidence 346778877753
Done!