Query 048101
Match_columns 400
No_of_seqs 215 out of 709
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 10:38:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048101.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048101hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rk8c_ b.72.3.1 (C:) Pym (Wit 75.8 0.09 6.6E-06 34.1 -2.2 11 303-313 17-27 (33)
2 d2ot9a1 c.52.1.33 (A:2-180) Hy 17.9 16 0.0012 31.2 0.8 28 35-63 22-49 (179)
3 d2cu8a1 g.39.1.3 (A:8-37) Cyst 17.3 22 0.0016 22.2 1.1 11 10-20 2-12 (30)
4 d2g3wa1 c.52.1.33 (A:4-182) Hy 15.2 21 0.0015 30.5 0.8 28 35-63 20-47 (179)
5 d2dara2 g.39.1.3 (A:8-52) PDZ 12.3 38 0.0027 22.9 1.3 16 6-21 14-29 (45)
6 d1cl4a_ g.40.1.1 (A:) Nucleoca 11.6 36 0.0026 21.5 0.9 8 12-19 4-11 (32)
7 d1dsva_ g.40.1.1 (A:) Nucleic 8.8 58 0.0042 20.4 1.1 9 11-19 3-11 (31)
8 d1u5sb1 g.39.1.3 (B:72-102) Pi 8.2 40 0.0029 21.2 0.1 14 8-21 3-16 (31)
9 d2vkva2 a.121.1.1 (A:68-205) T 7.7 57 0.0041 24.6 0.9 26 342-367 37-62 (138)
10 g2bi6.2 g.3.12.1 (L:,H:1-7,H:3 7.1 79 0.0057 18.9 1.1 21 12-34 2-25 (28)
No 1
>d1rk8c_ b.72.3.1 (C:) Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=75.81 E-value=0.09 Score=34.14 Aligned_cols=11 Identities=64% Similarity=1.214 Sum_probs=9.4
Q ss_pred EcCchhhHHHh
Q 048101 303 LDGTWSKAKRM 313 (400)
Q Consensus 303 IDGTWrQAkkM 313 (400)
.||||++++++
T Consensus 17 pDGtWRK~rrv 27 (33)
T d1rk8c_ 17 PDGTWRKARRV 27 (33)
T ss_dssp TTSCEECCEEC
T ss_pred CCCccccceec
Confidence 49999999875
No 2
>d2ot9a1 c.52.1.33 (A:2-180) Hypothetical protein PSPTO1487 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=17.93 E-value=16 Score=31.19 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=23.0
Q ss_pred ceeEEEEEeCCccccCCCChHHHHhhccC
Q 048101 35 NSVSVTILQHSLERNHPLNSTRIAKLGLK 63 (400)
Q Consensus 35 ~~~~v~ILQHP~E~~halnT~rLl~l~L~ 63 (400)
....++|=|||+|....+ -+|||+-+|.
T Consensus 22 ~~~~LTlArHPSEt~eRm-m~RlLAfal~ 49 (179)
T d2ot9a1 22 ESVKQTIARHPSETEERM-TVRLLAYAFW 49 (179)
T ss_dssp EEEEEEEEECTTSCHHHH-HHHHHHHHHT
T ss_pred ccceEEEecCCCccHHHH-HHHHHHHHhc
Confidence 457899999999996555 6899998884
No 3
>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.32 E-value=22 Score=22.25 Aligned_cols=11 Identities=45% Similarity=1.029 Sum_probs=8.1
Q ss_pred CCCCCCCCCCc
Q 048101 10 RSICPSCSKPT 20 (400)
Q Consensus 10 R~~C~rC~rP~ 20 (400)
-+.|+||.+|-
T Consensus 2 ~~~CprC~K~V 12 (30)
T d2cu8a1 2 ASKCPKCDKTV 12 (30)
T ss_dssp CCBCTTTCCBC
T ss_pred CCcCCCCCCce
Confidence 36789988863
No 4
>d2g3wa1 c.52.1.33 (A:4-182) Hypothetical protein XAC2396 {Xanthomonas axonopodis pv. citri [TaxId: 92829]}
Probab=15.21 E-value=21 Score=30.45 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=22.8
Q ss_pred ceeEEEEEeCCccccCCCChHHHHhhccC
Q 048101 35 NSVSVTILQHSLERNHPLNSTRIAKLGLK 63 (400)
Q Consensus 35 ~~~~v~ILQHP~E~~halnT~rLl~l~L~ 63 (400)
....++|=|||+|...-+ =+|||+-+|.
T Consensus 20 ~~~~lTlArHPSEt~eRm-m~RlLAfal~ 47 (179)
T d2g3wa1 20 ANHSLTLAQHPSETDERL-MVRLLAFALF 47 (179)
T ss_dssp EEEEEEEEECTTCCHHHH-HHHHHHHHHT
T ss_pred ccceEEEecCCCccHHHH-HHHHHHHHhc
Confidence 457899999999996555 5899998884
No 5
>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.32 E-value=38 Score=22.93 Aligned_cols=16 Identities=25% Similarity=0.721 Sum_probs=12.6
Q ss_pred CCCCCCCCCCCCCCcc
Q 048101 6 AKSKRSICPSCSKPTR 21 (400)
Q Consensus 6 ~~~~R~~C~rC~rP~~ 21 (400)
+..|-|+|..|.+|-+
T Consensus 14 ~~~r~P~C~~C~~pI~ 29 (45)
T d2dara2 14 AGKRTPMCAHCNQVIR 29 (45)
T ss_dssp TTTCCCBBSSSCCBCC
T ss_pred CCCCCeeccccCCccc
Confidence 3457799999999854
No 6
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=11.62 E-value=36 Score=21.53 Aligned_cols=8 Identities=38% Similarity=1.431 Sum_probs=5.7
Q ss_pred CCCCCCCC
Q 048101 12 ICPSCSKP 19 (400)
Q Consensus 12 ~C~rC~rP 19 (400)
.||||+|-
T Consensus 4 lCPrC~kG 11 (32)
T d1cl4a_ 4 LCPRCKRG 11 (32)
T ss_dssp SCSSCSSC
T ss_pred cCccccCc
Confidence 57888764
No 7
>d1dsva_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=8.78 E-value=58 Score=20.39 Aligned_cols=9 Identities=44% Similarity=1.305 Sum_probs=6.4
Q ss_pred CCCCCCCCC
Q 048101 11 SICPSCSKP 19 (400)
Q Consensus 11 ~~C~rC~rP 19 (400)
-.||||+|-
T Consensus 3 ~lCPrC~kG 11 (31)
T d1dsva_ 3 GLCPRCKKG 11 (31)
T ss_dssp CBCTTTCSS
T ss_pred ccCccccCc
Confidence 468888774
No 8
>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.19 E-value=40 Score=21.18 Aligned_cols=14 Identities=29% Similarity=0.769 Sum_probs=10.7
Q ss_pred CCCCCCCCCCCCcc
Q 048101 8 SKRSICPSCSKPTR 21 (400)
Q Consensus 8 ~~R~~C~rC~rP~~ 21 (400)
..-|+|..|+||-.
T Consensus 3 mg~p~C~~C~~PI~ 16 (31)
T d1u5sb1 3 MGVPICGACRRPIE 16 (31)
T ss_dssp CCCCEETTTTEECC
T ss_pred cCCcchhhcCCchh
Confidence 45688999999853
No 9
>d2vkva2 a.121.1.1 (A:68-205) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]}
Probab=7.70 E-value=57 Score=24.64 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=20.5
Q ss_pred CCCCCCccHHHHHHHHHHHcCCChHH
Q 048101 342 QPKAGYLSTIESTVYTLMALGDNTER 367 (400)
Q Consensus 342 Qp~~g~LSTIEAia~aL~~Lge~~e~ 367 (400)
.+.+..|..+|++..+|...|-.++.
T Consensus 37 ~~~p~~l~~~e~~l~~L~~aGl~~~~ 62 (138)
T d2vkva2 37 RPDEKQYDTVETQLRFMTENGFSLRD 62 (138)
T ss_dssp CCCGGGHHHHHHHHHHHHHTTCCHHH
T ss_pred CCChHHHHHHHHHHHHHHHCCCCHHH
Confidence 34567788999999999999875443
No 10
>g2bi6.2 g.3.12.1 (L:,H:1-7,H:32-41) Bromelain inhibitor VI (cysteine protease inhibitor) {Pineapple (Ananas comosus) [TaxId: 4615]}
Probab=7.06 E-value=79 Score=18.92 Aligned_cols=21 Identities=33% Similarity=0.847 Sum_probs=14.1
Q ss_pred CCCCCCCCcc---cccccccCCCCCC
Q 048101 12 ICPSCSKPTR---LCLCNRIQDPGLE 34 (400)
Q Consensus 12 ~C~rC~rP~~---~ClC~~i~~~pl~ 34 (400)
.|..|.-|.+ .|+|..| .|-+
T Consensus 2 acsecvcplreeykcycdli--spnd 25 (28)
T g2bi6.2 2 ACSECVCPLREEYKCYCDLI--SPND 25 (28)
T ss_dssp CCSCEECCCCCCSSCEECCC--CSSS
T ss_pred ccccccccchhhheeeeeee--cccc
Confidence 3666665554 6999999 5544
Done!