Query 048106
Match_columns 694
No_of_seqs 256 out of 1725
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 10:41:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048106.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048106hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 13.9 1.2E+02 0.009 28.1 6.4 40 204-243 269-308 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 9.2 2.1E+02 0.015 25.4 6.1 43 207-249 30-76 (417)
3 d3cx5c1 f.32.1.1 (C:262-385) M 3.7 3.1E+02 0.022 22.5 3.2 41 528-569 17-57 (124)
4 d2c4ba2 g.3.2.1 (A:117-144) Tr 3.6 1.2E+02 0.0087 18.6 0.3 10 110-119 6-15 (28)
5 d1mxga1 b.71.1.1 (A:362-435) B 2.9 98 0.0071 23.0 -0.9 19 27-45 11-29 (74)
6 d1qpza1 a.35.1.5 (A:2-58) Puri 2.8 1.8E+02 0.013 21.0 0.6 13 29-41 38-50 (57)
7 d1uxda_ a.35.1.5 (A:) Fructose 2.6 2.4E+02 0.018 20.2 1.2 14 28-41 40-53 (59)
8 d2e74e1 f.23.24.1 (E:1-32) Pet 2.4 5.3E+02 0.039 15.9 2.4 14 351-364 13-26 (32)
9 d2hsga1 a.35.1.5 (A:2-58) Gluc 2.4 2.2E+02 0.016 20.4 0.6 12 29-40 39-50 (57)
10 d1rk8c_ b.72.3.1 (C:) Pym (Wit 2.2 2E+02 0.015 18.5 0.1 16 22-37 14-33 (33)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=13.92 E-value=1.2e+02 Score=28.11 Aligned_cols=40 Identities=15% Similarity=0.008 Sum_probs=27.3
Q ss_pred HhHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 048106 204 LILIPLVIVPAMGGSHEDTSNVVSTVLFVSGVTTLLHTFF 243 (694)
Q Consensus 204 ~IvvPlIia~a~Gl~~~~~~~lIsatl~vsGIaTllQ~~~ 243 (694)
....|..+.+..+++.++.........+...+++++..++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 308 (447)
T d1pw4a_ 269 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 308 (447)
T ss_dssp HHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhh
Confidence 3345666666678888877777766666667777776654
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=9.16 E-value=2.1e+02 Score=25.39 Aligned_cols=43 Identities=21% Similarity=0.201 Sum_probs=31.8
Q ss_pred HHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHH----hccCcce
Q 048106 207 IPLVIVPAMGGSHEDTSNVVSTVLFVSGVTTLLHTF----FGSRLPL 249 (694)
Q Consensus 207 vPlIia~a~Gl~~~~~~~lIsatl~vsGIaTllQ~~----~G~rLPi 249 (694)
.|+.+.+..|++..|...+.+...+...++.++-.. +|.|-.+
T Consensus 30 l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l 76 (417)
T d1pv7a_ 30 FPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL 76 (417)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 344466778999999888888888888888887775 5666544
No 3
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.68 E-value=3.1e+02 Score=22.52 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=23.9
Q ss_pred HHHHHHhCChhhhhHHHHHHHHHHHHhhccccccccCCCccc
Q 048106 528 VGGFIASIPQVMVAGLLCFMWAMLAALGLSNLRYSEAGSSRN 569 (694)
Q Consensus 528 ~~allasIP~pVlGG~livlfg~i~~sGl~~L~~~~~~~~RN 569 (694)
+=|++-+||+- +||++.++.+.++..-+-.++++...+.|.
T Consensus 17 ~YaiLRsiP~k-~~Gvl~~~~si~il~~lP~l~~s~~~s~~~ 57 (124)
T d3cx5c1 17 FYAILRSIPDK-LLGVITMFAAILVLLVLPFTDRSVVRGNTF 57 (124)
T ss_dssp HHHHHHTSSSH-HHHHHHHHHHHHGGGGHHHHCCCSSSSSTT
T ss_pred HHHHHhcCCcc-hhhhHHHHHHHHHHHHHHHHhhhhhhhcch
Confidence 45789999998 466666544444444444455554444443
No 4
>d2c4ba2 g.3.2.1 (A:117-144) Trypsin inhibitor {Jumping cucumber (Ecballium elaterium) [TaxId: 3679]}
Probab=3.63 E-value=1.2e+02 Score=18.60 Aligned_cols=10 Identities=60% Similarity=0.438 Sum_probs=7.7
Q ss_pred cccccCCCcC
Q 048106 110 VKRRRDSDKG 119 (694)
Q Consensus 110 ~~~~~~~~~~ 119 (694)
.|-|||||.-
T Consensus 6 kkcrrdsdcl 15 (28)
T d2c4ba2 6 KKCRRDSDCL 15 (28)
T ss_dssp CBCSSGGGSC
T ss_pred HHhccccccc
Confidence 4678899975
No 5
>d1mxga1 b.71.1.1 (A:362-435) Bacterial alpha-Amylase {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=2.86 E-value=98 Score=23.02 Aligned_cols=19 Identities=32% Similarity=0.648 Sum_probs=16.1
Q ss_pred CchhhhhCCCcCccccccC
Q 048106 27 SSWAKRTGFRPKFSGETNA 45 (694)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~ 45 (694)
+||+.|-=|+|||-|.+--
T Consensus 11 s~~~~rwv~v~kfag~~ih 29 (74)
T d1mxga1 11 PNWVGRWVYVPKFAGACIH 29 (74)
T ss_dssp SSCEEEEEECGGGTTCEEE
T ss_pred ccccccEEEeccccceehh
Confidence 6899999999999997743
No 6
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.83 E-value=1.8e+02 Score=20.95 Aligned_cols=13 Identities=15% Similarity=0.163 Sum_probs=10.1
Q ss_pred hhhhhCCCcCccc
Q 048106 29 WAKRTGFRPKFSG 41 (694)
Q Consensus 29 ~~~~~~~~~~~~~ 41 (694)
=|++.||+|+...
T Consensus 38 ~a~~lgY~pn~~A 50 (57)
T d1qpza1 38 AIKELHYSPSAVA 50 (57)
T ss_dssp HHHHHTCCCCHHH
T ss_pred HHHHHCCCCCHHH
Confidence 4788999998653
No 7
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.64 E-value=2.4e+02 Score=20.20 Aligned_cols=14 Identities=7% Similarity=0.313 Sum_probs=11.2
Q ss_pred chhhhhCCCcCccc
Q 048106 28 SWAKRTGFRPKFSG 41 (694)
Q Consensus 28 ~~~~~~~~~~~~~~ 41 (694)
.=|++.||+|+...
T Consensus 40 ~~a~~lgY~pn~~A 53 (59)
T d1uxda_ 40 AVVREHNYHPNAVA 53 (59)
T ss_dssp HHHHHHTCCCCSCC
T ss_pred HHHHHHCCCcCHHH
Confidence 45789999998764
No 8
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.44 E-value=5.3e+02 Score=15.94 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHH
Q 048106 351 AVPLGLAITWAAAF 364 (694)
Q Consensus 351 aVLIGi~vG~iva~ 364 (694)
+..+|+.+|.++++
T Consensus 13 alffgiavgiifai 26 (32)
T d2e74e1 13 ALFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhheeeE
Confidence 45567777766553
No 9
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=2.36 E-value=2.2e+02 Score=20.35 Aligned_cols=12 Identities=33% Similarity=0.606 Sum_probs=9.5
Q ss_pred hhhhhCCCcCcc
Q 048106 29 WAKRTGFRPKFS 40 (694)
Q Consensus 29 ~~~~~~~~~~~~ 40 (694)
=|++.||+|++.
T Consensus 39 aa~~lgY~pn~~ 50 (57)
T d2hsga1 39 TIERLGYRPNAV 50 (57)
T ss_dssp HHHHHTCCSCHH
T ss_pred HHHHHCcCCCHH
Confidence 478899999864
No 10
>d1rk8c_ b.72.3.1 (C:) Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=2.22 E-value=2e+02 Score=18.51 Aligned_cols=16 Identities=38% Similarity=0.947 Sum_probs=11.0
Q ss_pred CCCCCCchhh----hhCCCc
Q 048106 22 TPVPPSSWAK----RTGFRP 37 (694)
Q Consensus 22 ~~~~~~~~~~----~~~~~~ 37 (694)
+++|--+|.| |-||.|
T Consensus 14 tqRpDGtWRK~rrvk~gyvP 33 (33)
T d1rk8c_ 14 TKRPDGTWRKARRVKDGYVP 33 (33)
T ss_dssp EECTTSCEECCEECCTTCCC
T ss_pred ccCCCCccccceecccCcCC
Confidence 5677778987 456665
Done!