BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048108
(193 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 62 SETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTD 121
S + Y+IL ++ D +KK ++++AL HPDKN + A AFK I +A VL++
Sbjct: 3 SGSSGDYYEILGVSRGASDED-LKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSN 61
Query: 122 PGKRKAFD 129
P KRK +D
Sbjct: 62 PEKRKQYD 69
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 68 LYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKA 127
Y+ L + D IK+ +++ AL HPDKN A+ FK I A +VL+DP KR+
Sbjct: 5 YYQTLGLARGASD-EEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 128 FDNRIRLNKVKLMSCSC 144
FD R + L C
Sbjct: 64 FD---RYGEEGLKGSGC 77
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS-VAADGAFKLIRSANNVLTDP 122
K Y+IL ++ + I+K +K++A+ HPD+N A+ FK I+ A VLTD
Sbjct: 1 AKQDYYEILGVSKT-AEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDS 59
Query: 123 GKRKAFDN 130
KR A+D
Sbjct: 60 QKRAAYDQ 67
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 57 RVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKN--SSVAADGAFKLIRS 114
R LS + +LY +L + D IKK ++K+AL HPDKN + AAD FK I +
Sbjct: 8 RQRSLSTSGESLYHVLGL-DKNATSDDIKKSYRKLALKYHPDKNPDNPEAAD-KFKEINN 65
Query: 115 ANNVLTDPGKRKAFD 129
A+ +LTD KR +D
Sbjct: 66 AHAILTDATKRNIYD 80
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS-VAADGAFKLIRSANNVLTDP 122
K Y+IL ++ + I+K +K++A+ HPD+N A+ FK I+ A VLTD
Sbjct: 1 AKQDYYEILGVS-KTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDS 59
Query: 123 GKRKAFDN 130
KR A+D
Sbjct: 60 QKRAAYDQ 67
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS-VAADGAFKLIRSANNVLTDP 122
K Y+IL ++ + I+K +K++A+ HPD+N A+ FK I+ A VLTD
Sbjct: 1 AKQDYYEILGVS-KTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDS 59
Query: 123 GKRKAFDN 130
KR A+D
Sbjct: 60 QKRAAYDQ 67
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGA--FKLIRSANNVLTDP 122
++ Y +L + P + +KK ++KMAL HPDKN DGA FK I A VL+D
Sbjct: 7 ETGYYDVLGVK-PDASDNELKKAYRKMALKFHPDKN----PDGAEQFKQISQAYEVLSDE 61
Query: 123 GKRKAFD 129
KR+ +D
Sbjct: 62 KKRQIYD 68
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Query: 17 RDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITD 76
+D AE Y + D AI+ + A+E N + I + + K YKIL +
Sbjct: 333 KDRAEAYLIEEXYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392
Query: 77 PQVDISVIKKQFKKMALMLHPD----KNSSVAADGAFKLIRSANNVLTDPGKRKAFDN 130
+IK ++K+AL HPD + A+ F I +A VL+DP RK FD+
Sbjct: 393 NAKKQEIIKA-YRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEXRKKFDD 449
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 84 IKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFD 129
IKK F K+A+ HPDKN S A+ F+ I A L+D +RK +D
Sbjct: 24 IKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGK 124
++T Y +L + P +KK ++K+AL HPDKN + FK I A VL+D K
Sbjct: 5 ETTYYDVLGVK-PNATQEELKKAYRKLALKYHPDKNPNEGE--KFKQISQAYEVLSDAKK 61
Query: 125 RKAFD 129
R+ +D
Sbjct: 62 RELYD 66
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Query: 17 RDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITD 76
+D AE Y + D AI+ + A+E N + I + + K YKIL +
Sbjct: 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392
Query: 77 PQVDISVIKKQFKKMALMLHPD----KNSSVAADGAFKLIRSANNVLTDPGKRKAFDN 130
+IK ++K+AL HPD + A+ F I +A VL+DP RK FD+
Sbjct: 393 NAKKQEIIKA-YRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 62 SETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKN--SSVAADGAFKLIRSANNVL 119
S + Y++L + IKK ++K+AL HPDKN + A+ FKL+ A VL
Sbjct: 5 SSGMANYYEVLGVQ-ASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVL 63
Query: 120 TDPGKRKAFD 129
+D KR +D
Sbjct: 64 SDSKKRSLYD 73
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 61 LSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLT 120
+ ETK LY +L ++ P + +KK ++K AL HPDK + FK I A +L
Sbjct: 5 VKETK--LYDLLGVS-PSANEQELKKGYRKAALKYHPDKPTGDTE--KFKEISEAFEILN 59
Query: 121 DPGKRKAFD 129
DP KR+ +D
Sbjct: 60 DPQKREIYD 68
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 41.6 bits (96), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 84 IKKQFKKMALMLHPDKN-SSVAADGAFKLIRSANNVLTDPGKRKAFD 129
I++ FKK+AL LHPDKN ++ A G F I A VL D RK +D
Sbjct: 38 IRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYD 84
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 68 LYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS--VAADGAFKLIRSANNVLTDPGKR 125
Y++L + Q IKK ++K+AL HPDKN A+ FK + A VL+D KR
Sbjct: 11 YYEVLDVPR-QASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 126 KAFD 129
+D
Sbjct: 70 DIYD 73
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 69 YKILAI--TDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRK 126
Y++L + T Q DI KK +KK+A HPDKN A+ F I A +L++ KR
Sbjct: 20 YRVLGVSRTASQADI---KKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRT 76
Query: 127 AFDN 130
+D+
Sbjct: 77 NYDH 80
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 69 YKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAF 128
Y I+ + P D+ IK ++++A HPD + A+ FK + A VL+D +R +
Sbjct: 8 YAIMGVK-PTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEY 66
Query: 129 DN 130
D
Sbjct: 67 DQ 68
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGA-------FKLIRSANN 117
K Y IL DP +IS +K++++K+ LM HPDK S+ G F I A
Sbjct: 9 KKDWYSILG-ADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWK 67
Query: 118 VLTDPGKRKAFD 129
+L + ++ +D
Sbjct: 68 ILGNEETKREYD 79
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 84 IKKQFKKMALMLHPDKN-SSVAADGAFKLIRSANNVLTDPGKRKAFD 129
I++ FKK+AL LHPDKN ++ A G F I A VL D RK +D
Sbjct: 19 IRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYD 65
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKN--SSVAADGAFKLIRSANNVLTDPG 123
++ Y+IL + IKK +++ AL HPDKN + A+ FK + A VL+D
Sbjct: 2 ASYYEILDVPR-SASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKH 60
Query: 124 KRKAFDNRIRLNKVKLMSCSCCRPQGAG 151
KR+ +D R + G+G
Sbjct: 61 KREIYDRYGREGLTGTGTGPSRAEAGSG 88
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGA-------FKLIRSANN 117
K Y IL DP ++S +K++++K+ L+ HPDK S+ G F I A
Sbjct: 15 KKDWYSILG-ADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWK 73
Query: 118 VLTDPGKRKAFD 129
+L + +K +D
Sbjct: 74 ILGNEETKKKYD 85
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 69 YKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVL 119
+ +L + P + K ++K+A++LHPDK + ++ AFK + +A L
Sbjct: 30 WDMLGVK-PGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTAL 79
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 62 SETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVA-ADGAFKLIRSANNVLT 120
S +++ LY +L + + IK + + + HPD+NS A A F I A VL
Sbjct: 13 SYSRTALYDLLGVPSTATQ-AQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLG 71
Query: 121 DPGKRKAFD 129
R+ +D
Sbjct: 72 SATLRRKYD 80
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 62 SETKSTLYKILAITDPQ-VDISVIKKQFKKMALMLHPDKN-SSVAADGAFKLIRSANNVL 119
S + Y+IL + P+ IKK + ++A HPD N A F + A VL
Sbjct: 3 SGSSGDYYQILGV--PRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVL 60
Query: 120 TDPGKRKAFD 129
+D KRK +D
Sbjct: 61 SDEVKRKQYD 70
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 62 SETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKN-SSVAADGAFKLIRSANNVLT 120
SE Y +L D + I +FK AL HPDK+ + A F+ ++ A +LT
Sbjct: 16 SEDTEDYYTLLGC-DELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILT 74
Query: 121 DPGKRKAFDNRIR 133
+ R +D+ R
Sbjct: 75 NEESRARYDHWRR 87
>pdb|3AG7|A Chain A, An Auxilin-Like J-Domain Containing Protein, Jac1 J-Domain
Length = 106
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 17/99 (17%)
Query: 25 KLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVI 84
+++NID I+ + K NI + + S + +K + + D ++ + +
Sbjct: 7 EIKNIDAKIRKWSSGKS-----GNIRSLLSTLQYILWSGSG---WKPVPLMD-MIEGNAV 57
Query: 85 KKQFKKMALMLHPDK--------NSSVAADGAFKLIRSA 115
+K +++ L+LHPDK N A+ F+L++ A
Sbjct: 58 RKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEA 96
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNP 44
AE+ + A +YFK ++ + AIK A E NP
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNP 37
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 26 LQNIDMAIKTLKAAKEFNPDLPNID-DYFTACRVHQLSETKSTLYKILAITDPQV 79
L++ID ++ L A+E DLP +D + T + KSTL K L P++
Sbjct: 140 LRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAKPEI 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,184,545
Number of Sequences: 62578
Number of extensions: 183386
Number of successful extensions: 478
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 442
Number of HSP's gapped (non-prelim): 36
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)