Query 048108
Match_columns 193
No_of_seqs 272 out of 1972
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 06:21:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048108.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048108hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 1.3E-29 2.7E-34 220.3 9.0 69 65-134 3-72 (371)
2 KOG0624 dsRNA-activated protei 99.9 2.2E-24 4.7E-29 185.0 12.8 130 7-137 335-468 (504)
3 PRK14288 chaperone protein Dna 99.9 2.8E-23 6.2E-28 182.7 9.7 68 66-134 3-71 (369)
4 PRK14296 chaperone protein Dna 99.9 3.2E-23 6.9E-28 182.5 9.8 69 65-134 3-71 (372)
5 KOG0713 Molecular chaperone (D 99.9 5.9E-23 1.3E-27 175.1 7.3 70 64-134 14-84 (336)
6 PRK14279 chaperone protein Dna 99.9 2.7E-22 5.8E-27 177.8 9.6 67 66-133 9-76 (392)
7 KOG0712 Molecular chaperone (D 99.9 2.4E-22 5.1E-27 172.9 8.5 66 66-134 4-69 (337)
8 PTZ00037 DnaJ_C chaperone prot 99.9 4.5E-22 9.8E-27 177.5 9.6 65 65-133 27-91 (421)
9 PRK14298 chaperone protein Dna 99.9 4.6E-22 1E-26 175.5 9.0 68 66-134 5-72 (377)
10 PRK14286 chaperone protein Dna 99.9 7.3E-22 1.6E-26 173.9 10.1 67 66-133 4-71 (372)
11 PRK14287 chaperone protein Dna 99.9 5.5E-22 1.2E-26 174.7 9.0 69 65-134 3-71 (371)
12 PRK14276 chaperone protein Dna 99.9 6.1E-22 1.3E-26 174.9 9.2 68 66-134 4-71 (380)
13 PRK14278 chaperone protein Dna 99.9 9.5E-22 2.1E-26 173.5 8.6 67 66-133 3-69 (378)
14 PRK14283 chaperone protein Dna 99.9 1.5E-21 3.2E-26 172.3 9.6 68 65-133 4-71 (378)
15 PRK14280 chaperone protein Dna 99.9 1.8E-21 3.9E-26 171.7 9.6 68 66-134 4-71 (376)
16 PRK14284 chaperone protein Dna 99.8 2.6E-21 5.7E-26 171.5 9.8 68 66-134 1-69 (391)
17 PRK14295 chaperone protein Dna 99.8 4.5E-21 9.9E-26 169.8 10.2 64 66-130 9-73 (389)
18 PRK14282 chaperone protein Dna 99.8 4.7E-21 1E-25 168.7 10.1 69 65-134 3-73 (369)
19 KOG0720 Molecular chaperone (D 99.8 1.1E-21 2.5E-26 172.4 6.0 106 65-186 234-359 (490)
20 PRK14294 chaperone protein Dna 99.8 5.8E-21 1.3E-25 167.9 9.6 69 65-134 3-72 (366)
21 PRK14301 chaperone protein Dna 99.8 5.1E-21 1.1E-25 168.7 9.2 68 66-134 4-72 (373)
22 PRK14277 chaperone protein Dna 99.8 5.8E-21 1.3E-25 169.0 9.5 67 66-133 5-72 (386)
23 PRK14285 chaperone protein Dna 99.8 7.6E-21 1.7E-25 167.1 9.5 68 66-134 3-71 (365)
24 PRK10767 chaperone protein Dna 99.8 9.8E-21 2.1E-25 166.8 10.0 69 65-134 3-72 (371)
25 PRK14297 chaperone protein Dna 99.8 7E-21 1.5E-25 168.1 9.0 68 66-134 4-72 (380)
26 PRK14300 chaperone protein Dna 99.8 8E-21 1.7E-25 167.4 9.1 68 66-134 3-70 (372)
27 TIGR02349 DnaJ_bact chaperone 99.8 1.8E-20 4E-25 164.0 9.8 67 67-134 1-67 (354)
28 KOG0717 Molecular chaperone (D 99.8 4E-21 8.7E-26 169.0 5.6 100 64-165 6-120 (508)
29 KOG0550 Molecular chaperone (D 99.8 6.2E-20 1.3E-24 160.2 11.9 123 10-134 318-442 (486)
30 PRK14289 chaperone protein Dna 99.8 3.5E-20 7.6E-25 164.0 9.5 69 65-134 4-73 (386)
31 PRK14290 chaperone protein Dna 99.8 4.8E-20 1E-24 162.1 10.0 67 66-133 3-71 (365)
32 PRK14281 chaperone protein Dna 99.8 4.3E-20 9.3E-25 164.0 9.3 67 66-133 3-70 (397)
33 PRK14293 chaperone protein Dna 99.8 5.3E-20 1.1E-24 162.3 9.7 67 66-133 3-69 (374)
34 PRK14292 chaperone protein Dna 99.8 1.2E-19 2.6E-24 159.8 9.9 67 66-133 2-68 (371)
35 KOG0715 Molecular chaperone (D 99.8 1.6E-19 3.5E-24 154.0 8.1 68 66-134 43-110 (288)
36 PF00226 DnaJ: DnaJ domain; I 99.8 2E-19 4.3E-24 120.2 5.8 62 67-129 1-64 (64)
37 PRK14299 chaperone protein Dna 99.8 2.2E-19 4.7E-24 153.6 7.0 68 66-134 4-71 (291)
38 PRK14291 chaperone protein Dna 99.8 2.4E-19 5.1E-24 158.6 7.2 68 66-134 3-70 (382)
39 KOG0716 Molecular chaperone (D 99.8 7.3E-19 1.6E-23 146.1 7.0 69 65-134 30-99 (279)
40 KOG0691 Molecular chaperone (D 99.7 3E-18 6.4E-23 145.9 6.9 69 65-134 4-73 (296)
41 PRK10266 curved DNA-binding pr 99.7 5E-18 1.1E-22 146.1 7.0 67 66-133 4-70 (306)
42 smart00271 DnaJ DnaJ molecular 99.7 3.2E-17 7E-22 107.9 6.7 58 66-124 1-60 (60)
43 PTZ00341 Ring-infected erythro 99.7 1.9E-17 4E-22 156.9 7.2 68 66-134 573-640 (1136)
44 KOG0718 Molecular chaperone (D 99.7 2.8E-17 6E-22 145.1 6.9 68 66-134 9-80 (546)
45 cd06257 DnaJ DnaJ domain or J- 99.7 8.4E-17 1.8E-21 104.0 6.6 54 67-121 1-55 (55)
46 KOG0719 Molecular chaperone (D 99.7 4.7E-17 1E-21 132.8 5.7 70 64-134 12-84 (264)
47 KOG0721 Molecular chaperone (D 99.7 3E-16 6.6E-21 126.8 8.0 70 64-134 97-167 (230)
48 PHA03102 Small T antigen; Revi 99.6 2.8E-17 6.1E-22 127.9 1.5 113 66-185 5-119 (153)
49 TIGR03835 termin_org_DnaJ term 99.6 8.9E-16 1.9E-20 142.8 7.1 68 66-134 2-69 (871)
50 COG2214 CbpA DnaJ-class molecu 99.6 1.6E-15 3.5E-20 121.4 6.9 66 65-131 5-72 (237)
51 PRK05014 hscB co-chaperone Hsc 99.5 1.8E-14 3.8E-19 114.5 7.6 68 66-134 1-76 (171)
52 PRK01356 hscB co-chaperone Hsc 99.5 2.2E-14 4.7E-19 113.5 6.9 68 66-134 2-75 (166)
53 PRK00294 hscB co-chaperone Hsc 99.5 8.9E-14 1.9E-18 110.6 7.5 69 65-134 3-79 (173)
54 PRK03578 hscB co-chaperone Hsc 99.5 1E-13 2.2E-18 110.6 7.6 69 65-134 5-81 (176)
55 KOG0722 Molecular chaperone (D 99.4 8.8E-14 1.9E-18 115.1 4.2 70 65-135 32-101 (329)
56 KOG0714 Molecular chaperone (D 99.4 3.4E-13 7.5E-18 112.8 4.5 68 65-133 2-71 (306)
57 PRK09430 djlA Dna-J like membr 99.4 1.7E-12 3.8E-17 109.8 8.4 55 66-121 200-262 (267)
58 PTZ00100 DnaJ chaperone protei 99.3 1.3E-12 2.9E-17 97.0 5.6 52 65-120 64-115 (116)
59 PHA02624 large T antigen; Prov 99.3 2.1E-12 4.6E-17 118.9 4.9 64 61-128 6-71 (647)
60 COG5269 ZUO1 Ribosome-associat 99.3 4.7E-12 1E-16 105.8 4.3 107 65-180 42-153 (379)
61 PRK01773 hscB co-chaperone Hsc 99.2 3.3E-11 7.1E-16 95.9 7.0 68 66-133 2-76 (173)
62 KOG1150 Predicted molecular ch 99.2 5.1E-11 1.1E-15 95.6 6.8 64 65-129 52-117 (250)
63 COG5407 SEC63 Preprotein trans 99.2 4.4E-11 9.5E-16 105.9 7.0 70 64-134 96-171 (610)
64 TIGR00714 hscB Fe-S protein as 99.1 2.8E-10 6E-15 89.3 6.4 56 79-134 3-64 (157)
65 KOG1789 Endocytosis protein RM 98.5 2.2E-07 4.8E-12 89.6 6.0 53 66-120 1281-1336(2235)
66 KOG0568 Molecular chaperone (D 98.4 3.3E-07 7.1E-12 75.6 5.1 58 63-121 44-102 (342)
67 KOG0723 Molecular chaperone (D 98.3 1.7E-06 3.6E-11 63.0 5.5 54 66-123 56-109 (112)
68 KOG3192 Mitochondrial J-type c 97.7 6.4E-05 1.4E-09 58.4 4.8 70 65-134 7-83 (168)
69 KOG0431 Auxilin-like protein a 97.5 0.00018 4E-09 65.3 6.3 71 46-120 371-449 (453)
70 PF07719 TPR_2: Tetratricopept 97.2 0.0014 3.1E-08 37.0 5.1 34 13-46 1-34 (34)
71 PF00515 TPR_1: Tetratricopept 97.2 0.0014 3E-08 37.4 5.0 33 13-45 1-33 (34)
72 COG1076 DjlA DnaJ-domain-conta 97.1 0.0016 3.5E-08 51.7 7.0 53 66-119 113-173 (174)
73 PF13428 TPR_14: Tetratricopep 96.7 0.0041 8.8E-08 37.8 4.6 40 14-53 2-41 (44)
74 PF13414 TPR_11: TPR repeat; P 96.4 0.0024 5.3E-08 41.9 2.2 45 12-56 2-46 (69)
75 PF13414 TPR_11: TPR repeat; P 96.3 0.0055 1.2E-07 40.2 3.8 41 4-44 28-69 (69)
76 KOG0624 dsRNA-activated protei 96.2 0.057 1.2E-06 47.8 10.2 107 7-116 32-156 (504)
77 PF13371 TPR_9: Tetratricopept 96.0 0.012 2.6E-07 38.9 4.2 48 6-53 22-69 (73)
78 PF14853 Fis1_TPR_C: Fis1 C-te 96.0 0.045 9.8E-07 35.1 6.5 49 15-63 3-51 (53)
79 COG1076 DjlA DnaJ-domain-conta 95.9 0.003 6.5E-08 50.2 1.1 66 67-133 2-75 (174)
80 PF13181 TPR_8: Tetratricopept 95.9 0.019 4.2E-07 32.3 4.3 33 13-45 1-33 (34)
81 PF03656 Pam16: Pam16; InterP 95.7 0.026 5.6E-07 42.8 5.3 51 66-120 58-108 (127)
82 PF13432 TPR_16: Tetratricopep 95.6 0.017 3.7E-07 37.4 3.7 30 18-47 2-31 (65)
83 PF14559 TPR_19: Tetratricopep 95.5 0.013 2.8E-07 38.1 2.8 46 9-54 21-66 (68)
84 PF13174 TPR_6: Tetratricopept 95.3 0.044 9.6E-07 30.3 4.2 32 14-45 1-32 (33)
85 PF13176 TPR_7: Tetratricopept 95.0 0.029 6.4E-07 32.6 2.9 31 16-46 2-32 (36)
86 KOG0553 TPR repeat-containing 94.8 0.14 3E-06 44.2 7.6 40 8-47 76-115 (304)
87 PRK10866 outer membrane biogen 94.8 0.7 1.5E-05 38.5 11.7 97 16-113 72-171 (243)
88 COG3063 PilF Tfp pilus assembl 94.7 0.36 7.8E-06 40.4 9.4 73 9-100 30-103 (250)
89 PRK15359 type III secretion sy 94.7 0.054 1.2E-06 41.3 4.3 45 6-50 51-95 (144)
90 KOG0543 FKBP-type peptidyl-pro 94.6 0.052 1.1E-06 48.4 4.6 49 10-58 288-336 (397)
91 KOG0548 Molecular co-chaperone 94.4 0.19 4E-06 46.3 7.9 110 9-127 388-504 (539)
92 KOG4234 TPR repeat-containing 94.3 0.21 4.5E-06 41.3 7.1 75 12-91 133-211 (271)
93 PRK11788 tetratricopeptide rep 94.2 0.35 7.6E-06 41.8 8.9 35 13-47 180-214 (389)
94 PRK10370 formate-dependent nit 94.0 0.61 1.3E-05 37.5 9.3 48 6-53 66-113 (198)
95 PRK15363 pathogenicity island 93.9 0.72 1.6E-05 36.2 9.3 39 9-47 65-103 (157)
96 smart00028 TPR Tetratricopepti 93.9 0.12 2.7E-06 26.7 3.7 31 15-45 3-33 (34)
97 PF13432 TPR_16: Tetratricopep 93.5 0.14 3E-06 33.0 3.9 42 6-47 24-65 (65)
98 TIGR02552 LcrH_SycD type III s 93.2 0.2 4.4E-06 36.7 4.9 50 8-57 46-95 (135)
99 PF14863 Alkyl_sulf_dimr: Alky 93.0 0.36 7.7E-06 37.2 6.2 48 13-60 70-117 (141)
100 PF03704 BTAD: Bacterial trans 92.8 0.37 7.9E-06 36.2 6.0 43 14-56 63-105 (146)
101 PLN03088 SGT1, suppressor of 92.7 0.24 5.2E-06 43.5 5.5 73 6-79 29-103 (356)
102 PF14561 TPR_20: Tetratricopep 92.7 0.98 2.1E-05 31.9 7.7 42 6-47 15-56 (90)
103 PRK15174 Vi polysaccharide exp 92.5 0.82 1.8E-05 43.4 9.1 116 8-125 279-410 (656)
104 PRK10370 formate-dependent nit 92.2 0.37 8E-06 38.8 5.6 46 9-54 103-151 (198)
105 PLN03098 LPA1 LOW PSII ACCUMUL 92.2 0.73 1.6E-05 42.0 7.9 43 6-48 68-110 (453)
106 PF00684 DnaJ_CXXCXGXG: DnaJ c 91.8 0.13 2.7E-06 34.3 2.0 47 136-193 12-59 (66)
107 PF13512 TPR_18: Tetratricopep 91.6 1.5 3.2E-05 33.9 8.0 35 15-49 49-83 (142)
108 KOG0553 TPR repeat-containing 91.4 0.51 1.1E-05 40.7 5.8 46 2-47 104-149 (304)
109 PRK15359 type III secretion sy 91.2 0.72 1.6E-05 35.0 5.9 34 16-49 27-60 (144)
110 TIGR02552 LcrH_SycD type III s 90.6 0.82 1.8E-05 33.4 5.7 46 5-50 9-54 (135)
111 PF13374 TPR_10: Tetratricopep 90.4 0.88 1.9E-05 26.1 4.7 32 13-44 2-33 (42)
112 TIGR03504 FimV_Cterm FimV C-te 90.2 0.93 2E-05 27.9 4.7 29 17-46 3-31 (44)
113 PF13431 TPR_17: Tetratricopep 90.0 0.11 2.4E-06 29.9 0.4 32 2-33 2-33 (34)
114 PRK11189 lipoprotein NlpI; Pro 89.9 1 2.2E-05 38.3 6.4 40 8-47 93-132 (296)
115 PLN03088 SGT1, suppressor of 89.8 0.91 2E-05 39.9 6.1 36 14-49 3-38 (356)
116 PF13424 TPR_12: Tetratricopep 89.5 1.1 2.4E-05 29.7 5.2 33 10-42 2-34 (78)
117 PF14559 TPR_19: Tetratricopep 89.5 0.67 1.4E-05 29.8 3.9 34 23-56 1-34 (68)
118 KOG0543 FKBP-type peptidyl-pro 89.2 1.5 3.3E-05 39.2 7.1 76 15-95 259-338 (397)
119 COG2956 Predicted N-acetylgluc 88.7 12 0.00027 33.0 12.0 40 11-50 178-217 (389)
120 COG3063 PilF Tfp pilus assembl 88.4 3.3 7.1E-05 34.7 8.0 95 7-101 63-174 (250)
121 KOG0724 Zuotin and related mol 88.2 0.61 1.3E-05 40.5 3.9 55 78-132 3-62 (335)
122 PRK12370 invasion protein regu 88.1 5.3 0.00012 37.1 10.3 42 8-49 333-374 (553)
123 PF13371 TPR_9: Tetratricopept 88.1 1.8 3.9E-05 28.1 5.3 34 20-53 2-35 (73)
124 PF14901 Jiv90: Cleavage induc 87.6 0.18 3.9E-06 36.2 0.2 36 137-187 3-38 (94)
125 PF12895 Apc3: Anaphase-promot 87.0 0.77 1.7E-05 31.2 3.1 41 12-53 24-64 (84)
126 KOG4234 TPR repeat-containing 86.3 1.5 3.2E-05 36.3 4.8 51 6-56 161-211 (271)
127 PRK11788 tetratricopeptide rep 86.3 12 0.00026 32.2 10.9 38 9-46 210-247 (389)
128 TIGR00990 3a0801s09 mitochondr 86.3 2.4 5.2E-05 39.7 6.9 45 2-46 116-160 (615)
129 KOG0547 Translocase of outer m 86.1 1.5 3.3E-05 40.5 5.3 37 10-46 112-148 (606)
130 TIGR03302 OM_YfiO outer membra 86.1 16 0.00034 29.2 11.5 36 11-46 31-66 (235)
131 PF10516 SHNi-TPR: SHNi-TPR; 85.9 1.5 3.3E-05 26.0 3.6 30 13-42 1-30 (38)
132 PRK15179 Vi polysaccharide bio 85.7 7.5 0.00016 37.5 10.0 113 11-124 84-223 (694)
133 PF13429 TPR_15: Tetratricopep 85.5 1.7 3.7E-05 36.1 5.1 40 11-50 144-183 (280)
134 COG4235 Cytochrome c biogenesi 85.4 1.7 3.7E-05 37.4 5.0 48 8-55 151-198 (287)
135 PRK11189 lipoprotein NlpI; Pro 85.0 20 0.00043 30.4 11.4 38 12-49 63-100 (296)
136 TIGR02795 tol_pal_ybgF tol-pal 84.4 5.6 0.00012 27.7 6.7 32 15-46 4-35 (119)
137 KOG2002 TPR-containing nuclear 84.3 4.1 8.8E-05 40.4 7.5 39 9-47 160-198 (1018)
138 PF13446 RPT: A repeated domai 83.6 2.8 6.1E-05 27.2 4.4 26 67-93 6-31 (62)
139 PF07721 TPR_4: Tetratricopept 83.4 1.7 3.7E-05 23.1 2.8 24 14-37 2-25 (26)
140 PRK14285 chaperone protein Dna 83.4 0.95 2.1E-05 40.1 2.7 17 177-193 186-202 (365)
141 TIGR00990 3a0801s09 mitochondr 83.3 8.2 0.00018 36.1 9.1 39 9-47 327-365 (615)
142 PRK02603 photosystem I assembl 83.2 19 0.00041 27.7 10.1 39 9-47 31-69 (172)
143 PF13424 TPR_12: Tetratricopep 82.9 3.1 6.7E-05 27.4 4.6 33 11-43 44-76 (78)
144 PRK10803 tol-pal system protei 82.7 12 0.00026 31.6 9.0 35 13-47 142-177 (263)
145 PF10475 DUF2450: Protein of u 82.7 9.3 0.0002 32.6 8.4 85 15-122 129-213 (291)
146 cd00189 TPR Tetratricopeptide 82.5 4.3 9.2E-05 25.6 5.1 33 15-47 2-34 (100)
147 COG5010 TadD Flp pilus assembl 81.6 1.8 4E-05 36.6 3.6 42 12-53 99-140 (257)
148 TIGR03302 OM_YfiO outer membra 81.5 7.3 0.00016 31.2 7.1 32 17-48 170-201 (235)
149 PRK15363 pathogenicity island 81.5 2.5 5.3E-05 33.2 4.1 54 8-61 98-151 (157)
150 PF13525 YfiO: Outer membrane 81.3 26 0.00055 28.0 10.4 34 13-46 5-38 (203)
151 KOG3824 Huntingtin interacting 80.4 8.3 0.00018 34.0 7.2 42 8-49 111-152 (472)
152 TIGR02795 tol_pal_ybgF tol-pal 80.3 7.3 0.00016 27.1 6.0 38 13-50 39-76 (119)
153 KOG4626 O-linked N-acetylgluco 80.3 9.1 0.0002 36.8 7.9 46 2-47 377-422 (966)
154 PF14687 DUF4460: Domain of un 79.5 4.5 9.8E-05 29.9 4.7 48 77-124 4-56 (112)
155 COG5552 Uncharacterized conser 79.4 10 0.00022 26.1 6.0 44 67-111 4-47 (88)
156 cd00189 TPR Tetratricopeptide 79.3 3.5 7.6E-05 26.0 3.8 36 12-47 33-68 (100)
157 KOG3060 Uncharacterized conser 79.1 10 0.00022 32.3 7.2 44 12-55 153-196 (289)
158 CHL00033 ycf3 photosystem I as 78.7 27 0.00058 26.6 9.9 40 8-47 30-69 (168)
159 PF07219 HemY_N: HemY protein 78.5 9.5 0.00021 27.6 6.2 44 10-54 56-99 (108)
160 KOG0550 Molecular chaperone (D 78.1 9.9 0.00022 34.6 7.2 91 9-101 199-303 (486)
161 PF11833 DUF3353: Protein of u 78.1 4.3 9.3E-05 32.9 4.6 37 76-119 1-37 (194)
162 PRK02603 photosystem I assembl 78.0 8.3 0.00018 29.7 6.1 37 12-48 71-107 (172)
163 PF09723 Zn-ribbon_8: Zinc rib 77.4 2.2 4.7E-05 25.8 2.1 33 138-186 4-36 (42)
164 PF13525 YfiO: Outer membrane 77.2 7.9 0.00017 31.0 6.0 42 11-52 40-81 (203)
165 PF04733 Coatomer_E: Coatomer 77.2 6.8 0.00015 33.5 5.9 70 13-100 201-270 (290)
166 TIGR02521 type_IV_pilW type IV 76.8 6.2 0.00013 30.2 5.1 34 13-46 31-64 (234)
167 PRK12370 invasion protein regu 76.5 3.5 7.7E-05 38.2 4.2 42 7-48 366-407 (553)
168 KOG0376 Serine-threonine phosp 76.2 2.4 5.1E-05 38.9 2.8 57 6-62 65-121 (476)
169 PF07720 TPR_3: Tetratricopept 76.1 11 0.00024 21.9 4.9 32 14-45 2-35 (36)
170 PF13248 zf-ribbon_3: zinc-rib 76.0 1.8 3.9E-05 23.4 1.3 12 174-185 14-25 (26)
171 CHL00033 ycf3 photosystem I as 76.0 10 0.00023 28.9 6.2 38 12-49 71-108 (168)
172 PRK14291 chaperone protein Dna 75.9 2 4.3E-05 38.3 2.3 12 35-46 24-35 (382)
173 PRK10866 outer membrane biogen 75.0 25 0.00055 29.1 8.6 39 12-50 31-69 (243)
174 PRK09782 bacteriophage N4 rece 74.9 12 0.00026 37.6 7.7 52 5-56 70-121 (987)
175 PF04212 MIT: MIT (microtubule 74.8 10 0.00022 24.9 5.1 31 11-41 3-33 (69)
176 KOG1155 Anaphase-promoting com 74.7 32 0.00069 31.9 9.5 100 2-126 387-486 (559)
177 PRK10747 putative protoheme IX 74.2 4.2 9.1E-05 36.1 3.9 39 10-48 325-363 (398)
178 TIGR02521 type_IV_pilW type IV 73.5 13 0.00028 28.4 6.2 41 9-49 61-101 (234)
179 PF15469 Sec5: Exocyst complex 73.5 12 0.00026 29.4 6.1 77 21-101 94-174 (182)
180 PF02064 MAS20: MAS20 protein 73.3 10 0.00022 28.4 5.2 41 15-58 65-105 (121)
181 KOG2376 Signal recognition par 72.7 22 0.00047 33.7 8.2 78 12-100 174-259 (652)
182 COG0484 DnaJ DnaJ-class molecu 72.5 3.3 7.1E-05 36.9 2.8 23 171-193 178-200 (371)
183 PF09976 TPR_21: Tetratricopep 72.1 17 0.00036 27.2 6.3 36 11-46 46-81 (145)
184 PF00684 DnaJ_CXXCXGXG: DnaJ c 71.7 3.6 7.8E-05 27.2 2.2 19 173-191 12-30 (66)
185 PF12895 Apc3: Anaphase-promot 71.3 6.2 0.00013 26.5 3.5 28 12-39 57-84 (84)
186 KOG4648 Uncharacterized conser 70.9 4 8.8E-05 36.4 2.9 79 13-94 97-211 (536)
187 COG5010 TadD Flp pilus assembl 70.1 11 0.00023 32.0 5.2 43 8-50 129-171 (257)
188 cd02680 MIT_calpain7_2 MIT: do 70.0 10 0.00022 26.0 4.2 37 9-45 2-38 (75)
189 KOG0546 HSP90 co-chaperone CPR 69.6 8 0.00017 34.3 4.5 55 7-61 303-357 (372)
190 PF12688 TPR_5: Tetratrico pep 69.3 25 0.00055 26.1 6.6 33 13-45 38-70 (120)
191 PLN03165 chaperone protein dna 68.7 4.9 0.00011 29.7 2.6 45 141-188 54-98 (111)
192 KOG0548 Molecular co-chaperone 68.4 30 0.00065 32.3 8.0 40 9-48 354-393 (539)
193 PRK11447 cellulose synthase su 68.3 41 0.0009 34.2 9.9 34 15-48 605-638 (1157)
194 cd02682 MIT_AAA_Arch MIT: doma 68.2 16 0.00034 25.1 4.9 31 11-41 4-34 (75)
195 PF14938 SNAP: Soluble NSF att 67.7 54 0.0012 27.5 9.2 35 13-47 114-149 (282)
196 PRK09782 bacteriophage N4 rece 67.6 6.5 0.00014 39.5 3.9 44 7-50 637-680 (987)
197 PRK10153 DNA-binding transcrip 67.2 20 0.00043 33.3 6.9 34 12-45 419-452 (517)
198 TIGR02642 phage_xxxx uncharact 66.6 3.4 7.5E-05 33.3 1.5 30 139-189 99-128 (186)
199 KOG0547 Translocase of outer m 66.5 2.7 5.9E-05 38.9 1.0 41 6-46 387-427 (606)
200 PRK15174 Vi polysaccharide exp 66.5 9 0.00019 36.5 4.6 41 8-48 105-145 (656)
201 PRK14294 chaperone protein Dna 66.5 2.4 5.3E-05 37.5 0.7 18 176-193 183-200 (366)
202 cd02681 MIT_calpain7_1 MIT: do 66.2 18 0.00039 24.8 4.8 33 11-43 4-36 (76)
203 PF14346 DUF4398: Domain of un 65.9 17 0.00037 25.9 4.9 32 11-42 43-74 (103)
204 smart00745 MIT Microtubule Int 65.8 19 0.00041 24.0 4.9 32 10-41 5-36 (77)
205 cd02684 MIT_2 MIT: domain cont 65.6 19 0.00041 24.4 4.9 33 10-42 3-35 (75)
206 PRK14286 chaperone protein Dna 65.4 2.2 4.9E-05 37.8 0.3 17 177-193 190-206 (372)
207 TIGR00540 hemY_coli hemY prote 65.4 8 0.00017 34.3 3.8 35 14-48 336-372 (409)
208 PRK10767 chaperone protein Dna 65.1 2.9 6.3E-05 37.0 0.9 17 177-193 182-198 (371)
209 KOG0495 HAT repeat protein [RN 64.9 29 0.00063 33.6 7.3 120 16-149 587-722 (913)
210 PF13240 zinc_ribbon_2: zinc-r 64.9 4.5 9.8E-05 21.3 1.3 11 174-184 11-21 (23)
211 PRK14284 chaperone protein Dna 64.8 2.6 5.6E-05 37.7 0.6 17 177-193 198-214 (391)
212 COG4105 ComL DNA uptake lipopr 64.8 72 0.0016 27.0 9.1 75 9-99 163-237 (254)
213 COG4105 ComL DNA uptake lipopr 64.6 88 0.0019 26.5 11.5 38 12-49 33-70 (254)
214 KOG1129 TPR repeat-containing 64.0 8.2 0.00018 34.3 3.4 43 4-46 420-462 (478)
215 TIGR01385 TFSII transcription 63.9 42 0.0009 29.1 7.8 60 29-101 139-202 (299)
216 COG1729 Uncharacterized protei 63.8 9.1 0.0002 32.5 3.6 32 14-45 142-173 (262)
217 cd02683 MIT_1 MIT: domain cont 62.9 24 0.00051 24.1 5.0 32 10-41 3-34 (77)
218 PF11817 Foie-gras_1: Foie gra 62.9 30 0.00065 28.7 6.6 38 9-46 174-211 (247)
219 KOG3442 Uncharacterized conser 62.7 12 0.00026 28.2 3.7 35 67-102 60-94 (132)
220 TIGR02642 phage_xxxx uncharact 62.6 4.7 0.0001 32.5 1.6 18 176-193 99-118 (186)
221 KOG0545 Aryl-hydrocarbon recep 62.5 16 0.00034 31.3 4.7 33 14-46 265-297 (329)
222 PF13512 TPR_18: Tetratricopep 62.2 22 0.00048 27.4 5.2 36 13-48 10-45 (142)
223 KOG2002 TPR-containing nuclear 62.0 87 0.0019 31.5 10.2 41 6-46 300-340 (1018)
224 PRK14282 chaperone protein Dna 62.0 4.6 9.9E-05 35.8 1.6 17 177-193 196-212 (369)
225 cd02678 MIT_VPS4 MIT: domain c 61.7 24 0.00053 23.7 4.9 31 11-41 4-34 (75)
226 KOG2076 RNA polymerase III tra 61.6 18 0.00038 35.8 5.4 45 13-57 449-493 (895)
227 PRK10049 pgaA outer membrane p 61.0 1.6E+02 0.0034 28.6 11.9 39 12-50 358-396 (765)
228 PRK14301 chaperone protein Dna 60.4 3.3 7.1E-05 36.8 0.4 18 176-193 183-200 (373)
229 KOG4642 Chaperone-dependent E3 60.2 56 0.0012 27.8 7.5 36 12-47 9-44 (284)
230 PF12862 Apc5: Anaphase-promot 60.0 22 0.00048 24.8 4.6 37 12-48 40-76 (94)
231 PRK15331 chaperone protein Sic 59.8 40 0.00087 26.7 6.4 45 4-48 28-72 (165)
232 KOG3081 Vesicle coat complex C 59.4 79 0.0017 27.3 8.4 84 14-115 208-294 (299)
233 cd02656 MIT MIT: domain contai 59.4 29 0.00063 23.1 4.9 31 11-41 4-34 (75)
234 KOG1126 DNA-binding cell divis 58.1 19 0.00042 34.2 5.0 50 7-56 483-532 (638)
235 TIGR02917 PEP_TPR_lipo putativ 57.8 19 0.00042 33.6 5.1 36 11-46 54-89 (899)
236 PRK14281 chaperone protein Dna 57.7 5.7 0.00012 35.6 1.4 17 177-193 206-222 (397)
237 PF13429 TPR_15: Tetratricopep 57.6 19 0.00042 29.8 4.6 33 16-48 217-249 (280)
238 PRK11447 cellulose synthase su 57.6 13 0.00027 37.8 4.0 40 10-49 382-421 (1157)
239 PHA02537 M terminase endonucle 57.4 56 0.0012 27.2 7.2 36 25-61 190-225 (230)
240 TIGR02917 PEP_TPR_lipo putativ 57.1 28 0.0006 32.6 6.0 43 12-54 21-63 (899)
241 PF04505 Dispanin: Interferon- 56.7 15 0.00033 25.4 3.2 26 18-43 42-67 (82)
242 PF10041 DUF2277: Uncharacteri 56.6 51 0.0011 22.7 5.6 40 70-110 7-46 (78)
243 PRK14283 chaperone protein Dna 56.5 5.9 0.00013 35.2 1.3 17 177-193 190-206 (378)
244 KOG4648 Uncharacterized conser 56.3 25 0.00054 31.6 5.1 44 14-57 166-209 (536)
245 PRK14278 chaperone protein Dna 56.3 5.6 0.00012 35.4 1.1 18 176-193 182-199 (378)
246 PRK14296 chaperone protein Dna 55.8 6.4 0.00014 35.0 1.4 17 177-193 193-209 (372)
247 cd02679 MIT_spastin MIT: domai 55.4 31 0.00066 23.9 4.5 32 10-41 5-36 (79)
248 PF07709 SRR: Seven Residue Re 55.2 8.1 0.00018 17.7 1.1 13 108-120 2-14 (14)
249 COG3629 DnrI DNA-binding trans 54.9 50 0.0011 28.4 6.6 39 12-50 152-190 (280)
250 KOG1155 Anaphase-promoting com 54.6 33 0.00072 31.8 5.7 36 10-45 429-464 (559)
251 PRK14289 chaperone protein Dna 54.5 4.8 0.0001 35.8 0.4 12 139-150 154-165 (386)
252 PRK14298 chaperone protein Dna 54.4 11 0.00025 33.4 2.8 17 177-193 185-201 (377)
253 KOG3364 Membrane protein invol 54.3 32 0.00069 26.7 4.8 50 14-63 72-121 (149)
254 PRK10049 pgaA outer membrane p 54.2 17 0.00038 35.1 4.2 40 9-48 389-428 (765)
255 KOG0376 Serine-threonine phosp 53.6 3.6 7.7E-05 37.7 -0.5 37 10-46 35-71 (476)
256 smart00834 CxxC_CXXC_SSSS Puta 53.4 13 0.00028 21.5 2.1 32 138-185 4-35 (41)
257 TIGR02349 DnaJ_bact chaperone 52.8 6.9 0.00015 34.3 1.2 17 177-193 187-203 (354)
258 COG1107 Archaea-specific RecJ- 52.7 11 0.00025 35.6 2.5 16 175-190 67-82 (715)
259 PRK14574 hmsH outer membrane p 52.4 82 0.0018 31.2 8.5 39 15-53 104-142 (822)
260 PRK14280 chaperone protein Dna 52.3 6.6 0.00014 34.9 1.0 18 176-193 186-203 (376)
261 PRK10747 putative protoheme IX 52.0 82 0.0018 27.8 7.9 37 20-56 160-196 (398)
262 COG1645 Uncharacterized Zn-fin 51.9 9.8 0.00021 29.0 1.7 34 136-190 25-58 (131)
263 KOG4626 O-linked N-acetylgluco 51.8 14 0.0003 35.6 2.9 42 9-50 418-459 (966)
264 KOG1126 DNA-binding cell divis 51.8 43 0.00094 32.0 6.2 45 3-47 513-557 (638)
265 PLN03098 LPA1 LOW PSII ACCUMUL 51.8 13 0.00027 34.1 2.7 37 6-42 102-141 (453)
266 PF12688 TPR_5: Tetratrico pep 51.7 41 0.0009 24.9 5.0 34 14-47 2-35 (120)
267 KOG2463 Predicted RNA-binding 51.0 6.2 0.00013 34.6 0.5 21 165-185 242-266 (376)
268 PHA00626 hypothetical protein 50.7 14 0.00029 24.1 1.9 28 141-183 2-30 (59)
269 TIGR00208 fliS flagellar biosy 50.6 42 0.0009 25.0 4.9 32 11-42 29-60 (124)
270 PRK14276 chaperone protein Dna 50.6 7.2 0.00016 34.7 0.9 17 177-193 190-206 (380)
271 PHA02537 M terminase endonucle 50.2 1.3E+02 0.0028 25.1 8.2 74 23-96 93-179 (230)
272 PF13763 DUF4167: Domain of un 49.8 37 0.00081 23.6 4.2 29 13-41 39-67 (80)
273 cd02677 MIT_SNX15 MIT: domain 49.6 42 0.00091 22.8 4.4 32 11-42 4-35 (75)
274 PRK05685 fliS flagellar protei 49.6 43 0.00094 25.1 4.9 32 11-42 33-64 (132)
275 COG4976 Predicted methyltransf 49.5 36 0.00078 28.9 4.7 43 6-48 7-64 (287)
276 KOG2041 WD40 repeat protein [G 49.2 2E+02 0.0044 28.4 10.1 47 135-184 1127-1182(1189)
277 COG4783 Putative Zn-dependent 48.8 85 0.0019 29.0 7.4 33 14-46 341-373 (484)
278 COG4649 Uncharacterized protei 48.8 97 0.0021 25.3 6.9 55 6-60 160-214 (221)
279 PF14803 Nudix_N_2: Nudix N-te 48.7 10 0.00022 21.9 1.1 10 141-150 2-11 (34)
280 TIGR02605 CxxC_CxxC_SSSS putat 47.8 19 0.00041 22.2 2.3 13 138-150 4-16 (52)
281 PRK14293 chaperone protein Dna 47.3 9 0.00019 34.0 1.0 17 177-193 187-203 (374)
282 KOG2076 RNA polymerase III tra 47.2 3E+02 0.0064 27.6 11.1 44 12-55 138-181 (895)
283 PRK14290 chaperone protein Dna 46.9 13 0.00027 32.9 1.9 17 177-193 192-208 (365)
284 PRK14277 chaperone protein Dna 46.8 9 0.00019 34.2 0.9 17 177-193 199-215 (386)
285 PRK10941 hypothetical protein; 46.8 38 0.00083 28.8 4.7 30 18-47 186-215 (269)
286 cd05804 StaR_like StaR_like; a 46.3 56 0.0012 27.6 5.8 38 13-50 114-151 (355)
287 PF09295 ChAPs: ChAPs (Chs5p-A 46.1 28 0.00061 31.3 4.0 39 9-47 230-268 (395)
288 PRK15179 Vi polysaccharide bio 46.1 1.2E+02 0.0026 29.4 8.4 43 6-48 113-155 (694)
289 PRK14890 putative Zn-ribbon RN 46.0 10 0.00022 24.9 0.8 21 166-186 37-58 (59)
290 PF02561 FliS: Flagellar prote 46.0 44 0.00095 24.5 4.4 31 11-41 27-57 (122)
291 smart00386 HAT HAT (Half-A-TPR 45.9 30 0.00066 17.9 2.8 21 27-47 1-21 (33)
292 KOG2997 F-box protein FBX9 [Ge 45.8 40 0.00086 29.8 4.6 38 11-48 17-54 (366)
293 KOG1585 Protein required for f 45.8 55 0.0012 28.0 5.3 42 7-48 104-145 (308)
294 TIGR00985 3a0801s04tom mitocho 45.6 47 0.001 25.8 4.6 41 15-58 92-133 (148)
295 PTZ00037 DnaJ_C chaperone prot 45.2 11 0.00024 34.1 1.3 13 34-46 48-60 (421)
296 PRK14295 chaperone protein Dna 44.7 8.1 0.00018 34.5 0.3 19 175-193 204-222 (389)
297 PRK11906 transcriptional regul 44.6 29 0.00062 31.9 3.8 42 7-48 332-373 (458)
298 KOG0551 Hsp90 co-chaperone CNS 44.4 50 0.0011 29.4 5.0 35 12-46 118-152 (390)
299 PRK10803 tol-pal system protei 44.4 1.9E+02 0.0042 24.3 11.1 72 13-100 180-251 (263)
300 PHA00689 hypothetical protein 44.2 11 0.00024 23.8 0.8 19 173-191 14-32 (62)
301 KOG1125 TPR repeat-containing 44.1 67 0.0014 30.3 6.1 34 12-45 463-496 (579)
302 PLN03165 chaperone protein dna 44.1 17 0.00037 26.9 1.9 16 176-191 75-90 (111)
303 PF08969 USP8_dimer: USP8 dime 44.0 55 0.0012 23.7 4.7 33 11-43 36-68 (115)
304 PF12569 NARP1: NMDA receptor- 43.8 1.8E+02 0.0039 27.2 8.9 32 16-47 41-72 (517)
305 PRK14279 chaperone protein Dna 43.5 20 0.00044 32.0 2.6 19 175-193 211-229 (392)
306 PF09538 FYDLN_acid: Protein o 43.2 16 0.00034 26.8 1.6 11 140-150 10-20 (108)
307 PF08447 PAS_3: PAS fold; Int 43.0 11 0.00024 25.0 0.7 30 66-100 6-36 (91)
308 PRK14720 transcript cleavage f 42.9 3.7E+02 0.008 27.1 11.5 39 10-48 28-66 (906)
309 COG2250 Uncharacterized conser 42.9 59 0.0013 24.5 4.7 33 10-42 10-42 (132)
310 smart00685 DM14 Repeats in fly 42.8 45 0.00098 21.8 3.5 32 14-45 9-40 (59)
311 PRK14297 chaperone protein Dna 42.4 12 0.00026 33.3 1.0 18 176-193 191-208 (380)
312 TIGR00630 uvra excinuclease AB 42.4 32 0.00069 34.5 4.0 67 106-187 704-770 (924)
313 KOG2813 Predicted molecular ch 42.1 16 0.00034 32.1 1.7 22 166-187 235-256 (406)
314 KOG1173 Anaphase-promoting com 41.5 46 0.00099 31.5 4.6 70 16-86 458-530 (611)
315 PF04781 DUF627: Protein of un 41.4 1E+02 0.0022 22.8 5.7 30 19-48 2-31 (111)
316 PRK14287 chaperone protein Dna 41.3 12 0.00026 33.2 0.8 17 177-193 182-198 (371)
317 KOG4056 Translocase of outer m 41.2 81 0.0018 24.3 5.2 40 16-58 84-123 (143)
318 PRK15331 chaperone protein Sic 40.8 82 0.0018 24.9 5.4 41 9-49 67-107 (165)
319 TIGR00540 hemY_coli hemY prote 40.7 80 0.0017 27.9 6.0 36 20-55 160-195 (409)
320 PF14353 CpXC: CpXC protein 40.4 20 0.00044 26.5 1.9 11 140-150 2-12 (128)
321 PF10602 RPN7: 26S proteasome 40.4 72 0.0016 25.1 5.1 48 13-60 36-84 (177)
322 COG1516 FliS Flagellin-specifi 40.2 72 0.0016 24.3 4.8 33 11-43 29-61 (132)
323 PF09613 HrpB1_HrpK: Bacterial 39.4 1.8E+02 0.004 22.8 7.1 70 18-88 49-119 (160)
324 PRK12380 hydrogenase nickel in 39.4 19 0.0004 26.5 1.5 12 139-150 70-81 (113)
325 PTZ00043 cytochrome c oxidase 38.6 1E+02 0.0022 25.8 5.8 38 81-120 95-132 (268)
326 PRK14288 chaperone protein Dna 38.4 28 0.00062 30.8 2.7 17 177-193 179-195 (369)
327 PF07980 SusD: SusD family; I 38.2 64 0.0014 25.9 4.7 29 13-41 133-161 (266)
328 PF12569 NARP1: NMDA receptor- 38.2 54 0.0012 30.6 4.6 29 18-46 199-227 (517)
329 COG2015 Alkyl sulfatase and re 38.1 81 0.0017 29.6 5.5 45 12-56 451-495 (655)
330 COG2912 Uncharacterized conser 37.6 30 0.00065 29.5 2.6 25 23-47 191-215 (269)
331 COG4700 Uncharacterized protei 37.6 71 0.0015 26.4 4.6 48 12-59 123-170 (251)
332 PF14354 Lar_restr_allev: Rest 37.5 30 0.00065 22.0 2.1 11 140-150 4-14 (61)
333 KOG1308 Hsp70-interacting prot 37.3 31 0.00068 30.6 2.7 71 4-74 139-211 (377)
334 KOG1173 Anaphase-promoting com 37.2 82 0.0018 29.8 5.5 46 11-56 487-532 (611)
335 TIGR00100 hypA hydrogenase nic 37.1 22 0.00048 26.2 1.6 12 139-150 70-81 (115)
336 COG1729 Uncharacterized protei 37.1 1.7E+02 0.0037 24.9 7.1 41 19-59 184-224 (262)
337 PF12487 DUF3703: Protein of u 37.1 1.7E+02 0.0037 21.6 7.1 35 13-47 9-43 (112)
338 PRK14292 chaperone protein Dna 36.9 18 0.00039 32.0 1.2 12 139-150 139-150 (371)
339 PRK00420 hypothetical protein; 36.9 26 0.00057 25.9 1.9 11 140-150 24-34 (112)
340 COG4783 Putative Zn-dependent 36.5 2E+02 0.0043 26.7 7.8 46 11-56 304-349 (484)
341 PF05944 Phage_term_smal: Phag 35.1 1.1E+02 0.0024 23.2 5.2 48 23-70 58-115 (132)
342 PF08772 NOB1_Zn_bind: Nin one 35.0 23 0.00051 24.1 1.3 20 166-185 10-33 (73)
343 COG3071 HemY Uncharacterized e 35.0 2.4E+02 0.0051 25.6 7.9 42 12-53 152-193 (400)
344 PF03206 NifW: Nitrogen fixati 34.7 1.8E+02 0.0039 21.2 6.4 77 52-132 4-89 (105)
345 PF10571 UPF0547: Uncharacteri 34.6 24 0.00052 19.1 1.1 9 175-183 13-21 (26)
346 COG3947 Response regulator con 34.5 1.1E+02 0.0024 26.9 5.6 36 18-53 284-319 (361)
347 PF04216 FdhE: Protein involve 34.4 59 0.0013 27.6 4.0 49 139-188 172-223 (290)
348 KOG1125 TPR repeat-containing 34.1 68 0.0015 30.3 4.5 40 8-47 314-353 (579)
349 COG4235 Cytochrome c biogenesi 34.1 1.1E+02 0.0025 26.3 5.6 65 10-74 187-256 (287)
350 COG0266 Nei Formamidopyrimidin 34.0 70 0.0015 27.4 4.3 80 93-183 183-272 (273)
351 cd00084 HMG-box High Mobility 33.8 82 0.0018 19.5 3.8 43 85-131 12-54 (66)
352 PF07295 DUF1451: Protein of u 33.7 32 0.00069 26.6 2.0 15 176-190 130-144 (146)
353 PRK11032 hypothetical protein; 33.5 34 0.00074 26.9 2.2 26 165-190 124-156 (160)
354 TIGR00595 priA primosomal prot 33.4 43 0.00094 31.0 3.2 41 140-188 223-265 (505)
355 PRK01103 formamidopyrimidine/5 33.4 75 0.0016 26.8 4.5 10 93-102 183-192 (274)
356 KOG4555 TPR repeat-containing 33.3 51 0.0011 25.7 3.0 36 11-46 75-110 (175)
357 TIGR00577 fpg formamidopyrimid 33.2 69 0.0015 27.1 4.2 9 94-102 184-192 (272)
358 KOG4642 Chaperone-dependent E3 33.1 91 0.002 26.6 4.7 41 8-48 39-79 (284)
359 PF06044 DRP: Dam-replacing fa 33.1 21 0.00046 30.0 1.0 31 139-184 31-61 (254)
360 PRK00564 hypA hydrogenase nick 33.0 33 0.00072 25.3 2.0 13 138-150 70-82 (117)
361 PRK13945 formamidopyrimidine-D 32.7 83 0.0018 26.7 4.6 19 94-112 193-211 (282)
362 smart00748 HEPN Higher Eukaryt 32.6 88 0.0019 22.2 4.2 31 11-41 2-32 (113)
363 COG0068 HypF Hydrogenase matur 32.3 15 0.00033 35.4 0.1 61 117-185 109-182 (750)
364 TIGR00612 ispG_gcpE 1-hydroxy- 32.2 55 0.0012 29.0 3.4 33 109-149 237-269 (346)
365 KOG1308 Hsp70-interacting prot 32.1 18 0.00039 32.1 0.5 38 10-47 111-148 (377)
366 PF05741 zf-nanos: Nanos RNA b 31.9 9.6 0.00021 24.6 -0.9 13 175-187 32-44 (55)
367 PRK14811 formamidopyrimidine-D 31.7 86 0.0019 26.5 4.5 9 176-184 255-263 (269)
368 PF02255 PTS_IIA: PTS system, 31.7 69 0.0015 22.8 3.4 37 6-42 7-43 (96)
369 PRK00635 excinuclease ABC subu 31.4 38 0.00082 36.4 2.7 67 106-187 1575-1641(1809)
370 PF07754 DUF1610: Domain of un 31.4 28 0.0006 18.6 0.9 10 174-183 14-23 (24)
371 PF09295 ChAPs: ChAPs (Chs5p-A 31.1 1E+02 0.0022 27.8 5.1 35 8-42 263-297 (395)
372 cd01390 HMGB-UBF_HMG-box HMGB- 31.1 1E+02 0.0022 19.3 3.9 41 88-132 15-55 (66)
373 PF00401 ATP-synt_DE: ATP synt 30.7 1.1E+02 0.0024 18.7 3.8 34 7-40 2-39 (48)
374 TIGR03831 YgiT_finger YgiT-typ 30.7 39 0.00084 19.8 1.7 8 177-184 33-40 (46)
375 TIGR01562 FdhE formate dehydro 30.6 2E+02 0.0043 25.0 6.6 47 140-187 185-235 (305)
376 KOG4555 TPR repeat-containing 30.6 2.6E+02 0.0057 21.8 7.6 38 18-57 48-85 (175)
377 KOG0739 AAA+-type ATPase [Post 29.9 71 0.0015 28.3 3.7 40 4-43 1-40 (439)
378 PRK14714 DNA polymerase II lar 29.9 44 0.00095 34.6 2.7 11 139-149 667-677 (1337)
379 KOG2376 Signal recognition par 29.9 4.2E+02 0.009 25.5 8.9 28 19-46 116-143 (652)
380 cd01388 SOX-TCF_HMG-box SOX-TC 29.8 99 0.0022 20.2 3.8 44 86-133 14-57 (72)
381 COG1579 Zn-ribbon protein, pos 29.7 23 0.0005 29.7 0.7 12 173-184 218-229 (239)
382 KOG2813 Predicted molecular ch 29.6 46 0.00099 29.4 2.5 12 177-188 235-246 (406)
383 PF08631 SPO22: Meiosis protei 29.5 2.3E+02 0.0049 23.7 6.8 33 11-43 33-66 (278)
384 TIGR00823 EIIA-LAC phosphotran 29.5 84 0.0018 22.6 3.5 39 6-44 10-48 (99)
385 smart00659 RPOLCX RNA polymera 29.5 34 0.00074 20.8 1.3 11 140-150 3-13 (44)
386 smart00671 SEL1 Sel1-like repe 29.4 99 0.0021 16.5 3.9 28 15-42 3-34 (36)
387 cd05804 StaR_like StaR_like; a 29.3 1E+02 0.0023 25.9 4.7 36 12-47 42-77 (355)
388 PF03604 DNA_RNApol_7kD: DNA d 29.1 39 0.00085 19.2 1.4 11 175-185 16-26 (32)
389 PRK14873 primosome assembly pr 29.1 49 0.0011 31.9 2.9 42 139-188 392-434 (665)
390 KOG3617 WD40 and TPR repeat-co 28.9 87 0.0019 31.5 4.4 31 15-45 969-999 (1416)
391 PF12387 Peptidase_C74: Pestiv 28.8 32 0.0007 27.5 1.3 25 165-189 162-188 (200)
392 PRK10153 DNA-binding transcrip 28.8 2E+02 0.0043 26.8 6.7 41 11-51 337-380 (517)
393 PF14369 zf-RING_3: zinc-finge 28.7 40 0.00087 19.5 1.4 11 177-188 22-32 (35)
394 PF05207 zf-CSL: CSL zinc fing 28.7 10 0.00023 24.2 -1.2 40 135-189 14-53 (55)
395 PRK04023 DNA polymerase II lar 28.6 40 0.00088 34.0 2.2 14 136-149 623-636 (1121)
396 CHL00174 accD acetyl-CoA carbo 28.4 24 0.00051 30.6 0.6 33 135-174 34-66 (296)
397 COG2976 Uncharacterized protei 28.4 1.7E+02 0.0036 24.1 5.4 41 13-54 159-199 (207)
398 smart00208 TNFR Tumor necrosis 28.1 54 0.0012 18.7 1.9 16 177-193 16-31 (39)
399 cd00215 PTS_IIA_lac PTS_IIA, P 28.0 94 0.002 22.2 3.5 39 6-44 8-46 (97)
400 COG1198 PriA Primosomal protei 27.9 59 0.0013 31.8 3.2 49 140-188 436-487 (730)
401 COG2888 Predicted Zn-ribbon RN 27.9 25 0.00053 23.1 0.4 8 177-184 51-58 (61)
402 KOG1127 TPR repeat-containing 27.8 2.9E+02 0.0063 28.4 7.7 42 14-55 3-44 (1238)
403 PF00020 TNFR_c6: TNFR/NGFR cy 27.7 41 0.00088 19.4 1.4 16 177-193 16-31 (39)
404 KOG2518 5'-3' exonuclease [Rep 27.6 1.1E+02 0.0024 28.7 4.7 45 11-57 94-138 (556)
405 TIGR00373 conserved hypothetic 27.5 26 0.00056 27.3 0.6 31 137-185 107-137 (158)
406 PRK03824 hypA hydrogenase nick 27.5 48 0.001 25.1 2.1 13 138-150 69-81 (135)
407 TIGR00143 hypF [NiFe] hydrogen 27.5 37 0.0008 33.0 1.7 62 118-187 77-151 (711)
408 PF01155 HypA: Hydrogenase exp 27.4 20 0.00044 26.2 -0.0 14 137-150 68-81 (113)
409 PRK14810 formamidopyrimidine-D 27.4 1.1E+02 0.0024 25.9 4.5 8 176-183 264-271 (272)
410 PRK05978 hypothetical protein; 27.4 34 0.00075 26.5 1.3 15 136-150 30-44 (148)
411 COG2956 Predicted N-acetylgluc 27.4 4.5E+02 0.0098 23.5 8.5 81 13-100 107-195 (389)
412 TIGR03655 anti_R_Lar restricti 27.3 60 0.0013 20.3 2.2 11 140-150 2-12 (53)
413 KOG2003 TPR repeat-containing 27.1 1.5E+02 0.0033 27.7 5.5 41 11-51 556-596 (840)
414 KOG1105 Transcription elongati 26.9 1.1E+02 0.0023 26.6 4.3 29 67-100 170-198 (296)
415 PF09272 Hepsin-SRCR: Hepsin, 26.6 30 0.00065 25.4 0.7 28 159-186 80-108 (110)
416 KOG0712 Molecular chaperone (D 26.5 47 0.001 29.3 2.1 12 177-188 171-182 (337)
417 KOG1156 N-terminal acetyltrans 26.5 1.2E+02 0.0026 29.2 4.8 86 19-134 225-313 (700)
418 KOG0551 Hsp90 co-chaperone CNS 26.4 4.4E+02 0.0096 23.6 8.0 48 6-53 73-121 (390)
419 PLN02789 farnesyltranstransfer 26.4 1E+02 0.0023 26.7 4.2 41 7-47 65-106 (320)
420 PRK14102 nifW nitrogenase stab 26.4 2.3E+02 0.005 20.7 5.3 72 52-127 4-85 (105)
421 TIGR02300 FYDLN_acid conserved 26.3 45 0.00098 25.3 1.7 11 140-150 10-20 (129)
422 PF14205 Cys_rich_KTR: Cystein 26.3 82 0.0018 20.3 2.6 12 138-149 3-14 (55)
423 PF10979 DUF2786: Protein of u 26.1 56 0.0012 19.8 1.8 22 8-29 19-40 (43)
424 PF12434 Malate_DH: Malate deh 26.0 74 0.0016 17.5 2.0 18 80-97 9-26 (28)
425 PF12773 DZR: Double zinc ribb 25.8 52 0.0011 19.9 1.7 12 139-150 12-23 (50)
426 PRK00539 atpC F0F1 ATP synthas 25.7 1.7E+02 0.0037 22.0 4.8 22 6-27 87-108 (133)
427 TIGR00515 accD acetyl-CoA carb 25.1 30 0.00065 29.7 0.6 34 134-174 21-54 (285)
428 PLN02789 farnesyltranstransfer 24.7 1.1E+02 0.0024 26.5 4.1 39 9-47 138-176 (320)
429 PRK13452 atpC F0F1 ATP synthas 24.7 1.8E+02 0.0039 22.3 4.8 21 6-26 88-108 (145)
430 cd01389 MATA_HMG-box MATA_HMG- 24.5 1.4E+02 0.0031 19.7 3.8 45 85-133 13-57 (77)
431 PF13719 zinc_ribbon_5: zinc-r 24.5 48 0.001 19.2 1.2 11 140-150 3-13 (37)
432 KOG1127 TPR repeat-containing 24.5 1E+02 0.0022 31.4 4.1 39 9-47 592-630 (1238)
433 PRK06266 transcription initiat 24.3 32 0.00069 27.4 0.6 30 138-185 116-145 (178)
434 PRK11906 transcriptional regul 24.3 1.5E+02 0.0032 27.4 4.8 40 8-47 367-406 (458)
435 PRK05580 primosome assembly pr 24.2 75 0.0016 30.5 3.2 25 163-187 406-432 (679)
436 PF11846 DUF3366: Domain of un 24.1 1.7E+02 0.0038 22.8 4.8 31 16-46 147-177 (193)
437 KOG0545 Aryl-hydrocarbon recep 24.0 1.6E+02 0.0035 25.3 4.7 63 14-79 231-297 (329)
438 PF14938 SNAP: Soluble NSF att 23.9 4.3E+02 0.0092 22.0 8.9 25 19-43 80-104 (282)
439 PF15616 TerY-C: TerY-C metal 23.7 89 0.0019 23.8 2.9 40 140-188 78-117 (131)
440 PRK00366 ispG 4-hydroxy-3-meth 23.7 97 0.0021 27.6 3.5 91 51-150 157-279 (360)
441 TIGR00354 polC DNA polymerase, 23.6 3E+02 0.0064 28.1 7.0 57 32-92 906-964 (1095)
442 cd03031 GRX_GRX_like Glutaredo 23.4 60 0.0013 25.0 1.9 14 177-190 111-124 (147)
443 TIGR00756 PPR pentatricopeptid 23.3 1.2E+02 0.0027 15.6 3.5 24 19-42 6-29 (35)
444 PRK05654 acetyl-CoA carboxylas 23.3 33 0.00073 29.5 0.5 33 134-173 22-54 (292)
445 KOG2684 Sirtuin 5 and related 23.2 2.5E+02 0.0054 25.5 6.0 58 86-150 140-214 (412)
446 PF09986 DUF2225: Uncharacteri 23.0 3.4E+02 0.0073 22.0 6.4 47 9-56 161-207 (214)
447 PRK09591 celC cellobiose phosp 23.0 1.3E+02 0.0028 21.8 3.6 36 9-44 16-51 (104)
448 PF13453 zf-TFIIB: Transcripti 22.8 46 0.00099 19.6 0.9 10 175-184 18-27 (41)
449 TIGR02508 type_III_yscG type I 22.8 47 0.001 24.5 1.2 28 11-39 38-65 (115)
450 PRK14714 DNA polymerase II lar 22.8 55 0.0012 33.9 2.0 38 135-185 675-718 (1337)
451 PRK00464 nrdR transcriptional 22.5 53 0.0011 25.6 1.5 10 140-149 1-10 (154)
452 PRK00810 nifW nitrogenase stab 22.5 3.3E+02 0.0071 20.2 6.3 77 49-129 5-89 (113)
453 PF09976 TPR_21: Tetratricopep 22.5 1.4E+02 0.0031 22.0 3.9 26 13-38 85-110 (145)
454 smart00770 Zn_dep_PLPC Zinc de 22.3 2E+02 0.0043 24.2 4.9 35 10-44 111-145 (241)
455 PF04184 ST7: ST7 protein; In 22.3 6.7E+02 0.014 23.7 9.2 101 17-118 263-375 (539)
456 COG0777 AccD Acetyl-CoA carbox 22.2 37 0.00079 29.2 0.6 33 135-174 24-56 (294)
457 COG1379 PHP family phosphoeste 21.8 35 0.00077 30.2 0.4 77 71-150 167-257 (403)
458 PF10938 YfdX: YfdX protein; 21.6 1.9E+02 0.004 22.4 4.4 32 13-44 2-33 (155)
459 PF06552 TOM20_plant: Plant sp 21.6 2E+02 0.0044 23.2 4.6 29 29-57 96-124 (186)
460 PF12854 PPR_1: PPR repeat 21.6 1.6E+02 0.0034 16.3 3.1 21 18-38 12-32 (34)
461 PF13812 PPR_3: Pentatricopept 21.5 1.4E+02 0.003 15.5 3.5 24 18-41 6-29 (34)
462 PF05876 Terminase_GpA: Phage 21.1 82 0.0018 29.6 2.7 40 136-185 197-238 (557)
463 smart00440 ZnF_C2C2 C2C2 Zinc 20.8 66 0.0014 19.0 1.4 13 178-190 2-14 (40)
464 PF13041 PPR_2: PPR repeat fam 20.8 1.8E+02 0.004 17.1 3.5 28 19-46 9-36 (50)
465 KOG0718 Molecular chaperone (D 20.8 2.5E+02 0.0055 26.2 5.6 35 60-94 65-109 (546)
466 TIGR00757 RNaseEG ribonuclease 20.7 49 0.0011 30.0 1.1 13 177-189 391-403 (414)
467 PRK14300 chaperone protein Dna 20.6 54 0.0012 29.0 1.3 17 177-193 185-201 (372)
468 PRK00349 uvrA excinuclease ABC 20.6 91 0.002 31.4 3.0 67 106-187 706-772 (943)
469 KOG4162 Predicted calmodulin-b 20.5 8.5E+02 0.018 24.2 10.0 87 14-123 685-771 (799)
470 KOG1128 Uncharacterized conser 20.5 1.5E+02 0.0031 29.1 4.2 92 8-124 480-571 (777)
471 KOG1129 TPR repeat-containing 20.4 3.4E+02 0.0073 24.5 6.1 37 9-45 286-322 (478)
472 PF13717 zinc_ribbon_4: zinc-r 20.3 59 0.0013 18.8 1.0 11 140-150 3-13 (36)
473 PRK09710 lar restriction allev 20.3 88 0.0019 20.8 2.0 11 140-150 7-17 (64)
474 KOG1586 Protein required for f 20.2 2.6E+02 0.0057 23.8 5.2 73 8-87 87-161 (288)
475 PF07739 TipAS: TipAS antibiot 20.2 1.6E+02 0.0034 20.8 3.6 50 73-131 51-101 (118)
476 PF10058 DUF2296: Predicted in 20.1 89 0.0019 19.9 1.9 33 136-172 19-51 (54)
477 KOG0686 COP9 signalosome, subu 20.1 2.5E+02 0.0055 25.7 5.4 58 14-74 151-209 (466)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-29 Score=220.31 Aligned_cols=69 Identities=38% Similarity=0.569 Sum_probs=66.9
Q ss_pred ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
+.|||+|||| +++||.+|||+|||+||++||||+++ +++|+++|++|++||+|||||++|+.||+++..
T Consensus 3 ~~dyYeiLGV-~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~ 72 (371)
T COG0484 3 KRDYYEILGV-SKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHA 72 (371)
T ss_pred ccchhhhcCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCcc
Confidence 4799999999 99999999999999999999999999 889999999999999999999999999999876
No 2
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.92 E-value=2.2e-24 Score=185.04 Aligned_cols=130 Identities=27% Similarity=0.326 Sum_probs=122.2
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHH
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKK 86 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~ 86 (193)
+.+++++..+.++|++++..++|+.|+.+|++|..++++...+++-++.++++.....++|||+|||| .++|+..+|-+
T Consensus 335 ~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKILGV-kRnAsKqEI~K 413 (504)
T KOG0624|consen 335 DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKILGV-KRNASKQEITK 413 (504)
T ss_pred hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHhhh-cccccHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHhcCCCCCCCc----hHHHHHHHHHHHHHHcCCCchhhhhhhhhhhccc
Q 048108 87 QFKKMALMLHPDKNSSV----AADGAFKLIRSANNVLTDPGKRKAFDNRIRLNKV 137 (193)
Q Consensus 87 aYr~l~~~~HPDk~~~~----~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~~~~ 137 (193)
|||+++.+||||...++ .++.+|.-|..|-+||+||++|+.||.+-++.+.
T Consensus 414 AYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDPLD~ 468 (504)
T KOG0624|consen 414 AYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDPLDP 468 (504)
T ss_pred HHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCCCCh
Confidence 99999999999998864 4788999999999999999999999999887433
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=2.8e-23 Score=182.70 Aligned_cols=68 Identities=37% Similarity=0.604 Sum_probs=64.3
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
.|||+|||| +++||.++||+|||+||++||||+++ ++.++++|++|++||+||+||.+|+.||+++..
T Consensus 3 ~dyY~vLgv-~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~ 71 (369)
T PRK14288 3 LSYYEILEV-EKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKK 71 (369)
T ss_pred CChHHHcCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccc
Confidence 699999999 99999999999999999999999997 567899999999999999999999999998753
No 4
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=3.2e-23 Score=182.54 Aligned_cols=69 Identities=30% Similarity=0.446 Sum_probs=65.4
Q ss_pred ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
..|||+|||| +++|+.++||+|||+||++||||+++.+.++++|++|++||+|||||.+|+.||+++..
T Consensus 3 ~~dyY~~Lgv-~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~ 71 (372)
T PRK14296 3 KKDYYEVLGV-SKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHA 71 (372)
T ss_pred CCCHHHhcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccch
Confidence 3699999999 99999999999999999999999998888999999999999999999999999997753
No 5
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5.9e-23 Score=175.15 Aligned_cols=70 Identities=37% Similarity=0.566 Sum_probs=66.9
Q ss_pred cccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 64 ~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
..+|||+|||| +++|+..+||+||||||+++|||||+ +|.|.+.|+.|+.||+|||||++|+.||..|..
T Consensus 14 ~~rDfYelLgV-~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEe 84 (336)
T KOG0713|consen 14 AGRDFYELLGV-PKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEE 84 (336)
T ss_pred cCCCHHHHhCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHh
Confidence 45899999999 99999999999999999999999999 589999999999999999999999999999965
No 6
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=2.7e-22 Score=177.79 Aligned_cols=67 Identities=40% Similarity=0.669 Sum_probs=63.6
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIR 133 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 133 (193)
.|||+|||| +++|+.++||+|||+|+++||||+++ ++.++++|+.|++||+|||||++|+.||+++.
T Consensus 9 ~Dyy~~Lgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 9 KDFYKELGV-SSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred cCHHHhcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 799999999 99999999999999999999999987 46789999999999999999999999999864
No 7
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.4e-22 Score=172.87 Aligned_cols=66 Identities=42% Similarity=0.662 Sum_probs=63.2
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
..||+|||| +++||.+|||+|||+|+++||||||+. +.++|++|+.||+|||||++|..||+++..
T Consensus 4 ~~~y~il~v-~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~ 69 (337)
T KOG0712|consen 4 TKLYDILGV-SPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEE 69 (337)
T ss_pred cccceeecc-CCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhh
Confidence 689999999 999999999999999999999999975 889999999999999999999999999865
No 8
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.87 E-value=4.5e-22 Score=177.49 Aligned_cols=65 Identities=38% Similarity=0.613 Sum_probs=61.0
Q ss_pred ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108 65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIR 133 (193)
Q Consensus 65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 133 (193)
..|||+|||| +++||.++||+|||+||++||||++++ .++|++|++||+||+||.+|+.||.++.
T Consensus 27 ~~d~Y~vLGV-~~~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~~kR~~YD~~G~ 91 (421)
T PTZ00037 27 NEKLYEVLNL-SKDCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEKRKIYDEYGE 91 (421)
T ss_pred chhHHHHcCC-CCCCCHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccHHHHHHHhhhcc
Confidence 3799999999 999999999999999999999999853 5899999999999999999999998765
No 9
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=4.6e-22 Score=175.46 Aligned_cols=68 Identities=35% Similarity=0.547 Sum_probs=64.8
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
.|||+|||| +++|+.++||+|||+|+++||||+++.+.++++|++|++||++|+||.+|+.||+++..
T Consensus 5 ~d~y~iLgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (377)
T PRK14298 5 RDYYEILGL-SKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHA 72 (377)
T ss_pred CCHHHhhCC-CCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCcc
Confidence 699999999 99999999999999999999999998888899999999999999999999999998753
No 10
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=7.3e-22 Score=173.93 Aligned_cols=67 Identities=33% Similarity=0.567 Sum_probs=63.7
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIR 133 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 133 (193)
.|||+|||| +++|+.++||+|||+|+++||||+++ ++.++++|++|++||+||+||.+|+.||+++.
T Consensus 4 ~d~y~~Lgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 71 (372)
T PRK14286 4 RSYYDILGV-SKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGK 71 (372)
T ss_pred CCHHHhcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCc
Confidence 699999999 99999999999999999999999987 46789999999999999999999999999875
No 11
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=5.5e-22 Score=174.69 Aligned_cols=69 Identities=30% Similarity=0.561 Sum_probs=65.2
Q ss_pred ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
..|||+|||| +++|+.++||+|||+|+++||||+++.+.++++|+.|++||++|+||.+|+.||+++..
T Consensus 3 ~~d~y~~Lgv-~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~ 71 (371)
T PRK14287 3 KRDYYEVLGV-DRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT 71 (371)
T ss_pred CCCHHHhcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence 3699999999 99999999999999999999999998778899999999999999999999999998753
No 12
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=6.1e-22 Score=174.89 Aligned_cols=68 Identities=29% Similarity=0.485 Sum_probs=65.0
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
.|||+|||| +++||.++||+|||+|+++||||+++++.++++|+.|++||++|+||.+|+.||+++..
T Consensus 4 ~d~y~~Lgv-~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 71 (380)
T PRK14276 4 TEYYDRLGV-SKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAA 71 (380)
T ss_pred CCHHHhhCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCc
Confidence 699999999 99999999999999999999999998888999999999999999999999999997753
No 13
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=9.5e-22 Score=173.54 Aligned_cols=67 Identities=34% Similarity=0.492 Sum_probs=64.4
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIR 133 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 133 (193)
.|||+|||| +++|+.++||+|||+|+++||||+++++.++++|+.|++||+||+||.+|+.||+++.
T Consensus 3 ~d~y~iLgv-~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~ 69 (378)
T PRK14278 3 RDYYGLLGV-SRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGD 69 (378)
T ss_pred CCcceecCC-CCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCC
Confidence 699999999 9999999999999999999999999888889999999999999999999999999775
No 14
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.5e-21 Score=172.33 Aligned_cols=68 Identities=35% Similarity=0.529 Sum_probs=65.0
Q ss_pred ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108 65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIR 133 (193)
Q Consensus 65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 133 (193)
..|||+|||| +++|+.+|||+|||+|+++||||+++.+.++++|+.|++||++|+||.+|+.||+++.
T Consensus 4 ~~d~y~~Lgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~ 71 (378)
T PRK14283 4 KRDYYEVLGV-DRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGH 71 (378)
T ss_pred cCChHHhhCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcc
Confidence 4799999999 9999999999999999999999999888899999999999999999999999999764
No 15
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.8e-21 Score=171.71 Aligned_cols=68 Identities=32% Similarity=0.480 Sum_probs=65.0
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
.|||+|||| +++|+.++||+|||+|+++||||+++.+.++++|++|++||+||+||.+|+.||+++..
T Consensus 4 ~~~y~iLgv-~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 71 (376)
T PRK14280 4 RDYYEVLGV-SKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHA 71 (376)
T ss_pred CChHHhhCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCcc
Confidence 699999999 99999999999999999999999998888999999999999999999999999998753
No 16
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=2.6e-21 Score=171.45 Aligned_cols=68 Identities=34% Similarity=0.534 Sum_probs=63.7
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS-VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
.|||+|||| +++||.++||+|||+|+++||||+++. +.++++|+.|++||++|+||.+|+.||+++..
T Consensus 1 ~d~y~iLgv-~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 69 (391)
T PRK14284 1 MDYYTILGV-SKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKD 69 (391)
T ss_pred CCHHHhcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccc
Confidence 489999999 999999999999999999999999984 67889999999999999999999999998753
No 17
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=4.5e-21 Score=169.78 Aligned_cols=64 Identities=38% Similarity=0.596 Sum_probs=61.3
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDN 130 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~ 130 (193)
.|||+|||| +++|+.++||+|||+|+++||||+++ .+.++++|+.|++||+||+||.+|+.||+
T Consensus 9 ~d~y~~Lgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 9 KDYYKVLGV-PKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred cCHHHhcCC-CCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 699999999 99999999999999999999999987 45689999999999999999999999998
No 18
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=4.7e-21 Score=168.68 Aligned_cols=69 Identities=32% Similarity=0.526 Sum_probs=63.9
Q ss_pred ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC--chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS--VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~--~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
..|||+|||| +++||.++||+|||+|+++||||+++. +.++++|++|++||+||+||.+|+.||.++..
T Consensus 3 ~~d~y~~lgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~ 73 (369)
T PRK14282 3 KKDYYEILGV-SRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV 73 (369)
T ss_pred CCChHHhcCC-CCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence 3799999999 999999999999999999999999874 56889999999999999999999999997753
No 19
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.1e-21 Score=172.39 Aligned_cols=106 Identities=26% Similarity=0.416 Sum_probs=98.0
Q ss_pred ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh----------
Q 048108 65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL---------- 134 (193)
Q Consensus 65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~---------- 134 (193)
..|+|.|||| +++++.++||+.||++|.+.||||+..+.|+++|+.|+.||++|+|+.+|..||..+..
T Consensus 234 ~~daYsvlGl-~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~kene~~~~~~~ 312 (490)
T KOG0720|consen 234 ILDAYSALGL-PSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKENELHRQVIS 312 (490)
T ss_pred CCCchhhcCC-CCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence 5899999999 99999999999999999999999999999999999999999999999999999988765
Q ss_pred ----------cccccccCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCCcc
Q 048108 135 ----------NKVKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRRK 186 (193)
Q Consensus 135 ----------~~~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~~~ 186 (193)
+-.....|..|+..|. ++|++.++++|+||++|+.+.
T Consensus 313 ~~~~~~~~~eEA~ntI~CskC~n~H~---------------r~~T~rs~s~AR~C~~C~~~H 359 (490)
T KOG0720|consen 313 SLNDLQKAVEEARNTIFCSKCGNTHF---------------RVLTSRSPSQARWCAECGVKH 359 (490)
T ss_pred HHHHHHHHHHHHHhheehhhhcCcce---------------eeeecCChhhhHHHHHhCccC
Confidence 2233467999999998 999999999999999999864
No 20
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=5.8e-21 Score=167.94 Aligned_cols=69 Identities=35% Similarity=0.538 Sum_probs=64.5
Q ss_pred ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
..|||+|||| +++|+.++||+|||+|+++||||+++ .+.+++.|+.|++||+||+||.+|+.||+++..
T Consensus 3 ~~d~y~~lgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~ 72 (366)
T PRK14294 3 KRDYYEILGV-TRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHE 72 (366)
T ss_pred CCChHHHhCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccc
Confidence 4799999999 99999999999999999999999997 467889999999999999999999999998753
No 21
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=5.1e-21 Score=168.67 Aligned_cols=68 Identities=32% Similarity=0.499 Sum_probs=63.7
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS-VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
.|||+|||| +++||.++||+|||+|+++||||+++. +.++++|+.|++||+||+||.+|+.||.++..
T Consensus 4 ~~~y~~Lgv-~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~ 72 (373)
T PRK14301 4 RDYYEVLGV-SRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHA 72 (373)
T ss_pred CChHHhcCC-CCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccc
Confidence 699999999 999999999999999999999999874 66889999999999999999999999997753
No 22
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=5.8e-21 Score=168.98 Aligned_cols=67 Identities=34% Similarity=0.551 Sum_probs=63.5
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIR 133 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 133 (193)
.|||+|||| +++|+.++||+|||+|+++||||+++ .+.++++|+.|++||+||+||.+|+.||.++.
T Consensus 5 ~d~y~~Lgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~ 72 (386)
T PRK14277 5 KDYYEILGV-DRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGH 72 (386)
T ss_pred CCHHHhcCC-CCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcc
Confidence 699999999 99999999999999999999999997 46788999999999999999999999999775
No 23
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=7.6e-21 Score=167.11 Aligned_cols=68 Identities=34% Similarity=0.496 Sum_probs=63.7
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS-VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
.|||+|||| +++||.++||+|||+|+++||||+++. +.++++|++|++||+||+||.+|..||.++..
T Consensus 3 ~d~y~iLgv-~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~ 71 (365)
T PRK14285 3 RDYYEILGL-SKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHT 71 (365)
T ss_pred CCHHHhcCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcc
Confidence 699999999 999999999999999999999999874 66889999999999999999999999997753
No 24
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=9.8e-21 Score=166.75 Aligned_cols=69 Identities=36% Similarity=0.605 Sum_probs=64.1
Q ss_pred ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
..|||+|||| +++|+.++||+|||+|+++||||+++ ++.++++|++|++||++|+||.+|..||.++..
T Consensus 3 ~~d~y~iLgv-~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 72 (371)
T PRK10767 3 KRDYYEVLGV-SRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHA 72 (371)
T ss_pred CCChHHhcCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccc
Confidence 3699999999 99999999999999999999999987 466889999999999999999999999987753
No 25
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=7e-21 Score=168.14 Aligned_cols=68 Identities=35% Similarity=0.560 Sum_probs=63.9
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS-VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
.|||+|||| +++|+.++||+|||+|+++||||+++. +.++++|+.|++||+||+||.+|+.||+++..
T Consensus 4 ~d~y~~Lgv-~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~ 72 (380)
T PRK14297 4 KDYYEVLGL-EKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTA 72 (380)
T ss_pred CChHHhhCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcc
Confidence 699999999 999999999999999999999999974 67889999999999999999999999998753
No 26
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=8e-21 Score=167.37 Aligned_cols=68 Identities=32% Similarity=0.456 Sum_probs=64.5
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
.|||+|||| +++||.++||+|||+|+++||||+++.+.++++|++|++||++|+||.+|+.||+++..
T Consensus 3 ~~~y~iLgv-~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~ 70 (372)
T PRK14300 3 QDYYQILGV-SKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHD 70 (372)
T ss_pred CChHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccc
Confidence 699999999 99999999999999999999999998778899999999999999999999999997753
No 27
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.83 E-value=1.8e-20 Score=164.04 Aligned_cols=67 Identities=36% Similarity=0.557 Sum_probs=63.6
Q ss_pred chhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 67 TLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 67 d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
|||+|||| +++|+.++||+|||+|+++||||+++.+.++++|+.|++||++|+||.+|..||.++..
T Consensus 1 d~y~~Lgv-~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~ 67 (354)
T TIGR02349 1 DYYEILGV-SKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHA 67 (354)
T ss_pred ChHHhCCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccc
Confidence 79999999 99999999999999999999999998777899999999999999999999999997753
No 28
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=4e-21 Score=168.98 Aligned_cols=100 Identities=29% Similarity=0.446 Sum_probs=88.6
Q ss_pred cccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC--chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh-------
Q 048108 64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS--VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL------- 134 (193)
Q Consensus 64 ~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~--~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~------- 134 (193)
..+.||+|||| ..+|+..+||++||+|||+||||+++. .++.+.|++|+.||+|||||..|+.||.....
T Consensus 6 ~~~c~YE~L~v-~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~~s 84 (508)
T KOG0717|consen 6 KKRCYYEVLGV-ERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGKNS 84 (508)
T ss_pred hhhHHHHHhcc-cccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCCCC
Confidence 45799999999 999999999999999999999999885 56889999999999999999999999987763
Q ss_pred ------cccccccCCCCCCCCCCCCCCcccccccCcc
Q 048108 135 ------NKVKLMSCSCCRPQGAGDNNSPRASTYKANN 165 (193)
Q Consensus 135 ------~~~f~~~c~~c~~~~~~~~~~~~~~~~~~~~ 165 (193)
.+.|..+.+.|+.+++ ..+.+||++|...+
T Consensus 85 ~~~~~~~dlf~ff~~~~y~gy~-~~~~gfy~vy~dvf 120 (508)
T KOG0717|consen 85 DTGVQIEDLFQFFTSSCYIGYE-NTSAGFYRVYQDVF 120 (508)
T ss_pred ccccchHHHHHHhhhhhhcccc-cccchhHHHHHHHH
Confidence 5677788889999995 77888998886554
No 29
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=6.2e-20 Score=160.23 Aligned_cols=123 Identities=28% Similarity=0.396 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHHHHH
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFK 89 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~aYr 89 (193)
..=-..++.+|.+++..++|++|++++++|.++..+. .+++++..++..+..+++.|||.|||| .+.++..+||++||
T Consensus 318 ~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~-e~r~~l~~A~~aLkkSkRkd~ykilGi-~~~as~~eikkayr 395 (486)
T KOG0550|consen 318 SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDC-EIRRTLREAQLALKKSKRKDWYKILGI-SRNASDDEIKKAYR 395 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-chHHHHHHHHHHHHHhhhhhHHHHhhh-hhhcccchhhhHHH
Confidence 3445678999999999999999999999999999994 599999999999999999999999999 99999999999999
Q ss_pred HHHHhcCCCCCCC--chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 90 KMALMLHPDKNSS--VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 90 ~l~~~~HPDk~~~--~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
++++.+|||++.. .+++.+|+.|.+||.+|+||.+|..||...+.
T Consensus 396 k~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~dl 442 (486)
T KOG0550|consen 396 KLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDL 442 (486)
T ss_pred HHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccch
Confidence 9999999999873 56788999999999999999999999987765
No 30
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=3.5e-20 Score=164.01 Aligned_cols=69 Identities=35% Similarity=0.566 Sum_probs=64.2
Q ss_pred ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
..|||+|||| +++|+.+|||+|||+|+++||||+++ .+.++++|+.|++||++|+||.+|+.||.++..
T Consensus 4 ~~~~y~~Lgv-~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~ 73 (386)
T PRK14289 4 KRDYYEVLGV-SKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHA 73 (386)
T ss_pred cCCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence 3799999999 99999999999999999999999997 457899999999999999999999999997653
No 31
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=4.8e-20 Score=162.06 Aligned_cols=67 Identities=37% Similarity=0.571 Sum_probs=63.0
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCc--hHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSV--AADGAFKLIRSANNVLTDPGKRKAFDNRIR 133 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~--~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 133 (193)
.|||+|||| +++|+.++||+|||+|+++||||+++.. .++++|+.|++||++|+||.+|+.||.++.
T Consensus 3 ~d~y~vLgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~ 71 (365)
T PRK14290 3 KDYYKILGV-DRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGT 71 (365)
T ss_pred CChhhhcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCC
Confidence 699999999 9999999999999999999999998743 688999999999999999999999999775
No 32
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=4.3e-20 Score=163.98 Aligned_cols=67 Identities=34% Similarity=0.570 Sum_probs=63.3
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-chHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS-VAADGAFKLIRSANNVLTDPGKRKAFDNRIR 133 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 133 (193)
.|||+|||| +++|+.++||+|||+|+++||||+++. +.++++|+.|++||++|+||.+|+.||.++.
T Consensus 3 ~d~y~iLgv-~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~ 70 (397)
T PRK14281 3 RDYYEVLGV-SRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGH 70 (397)
T ss_pred CChhhhcCC-CCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 699999999 999999999999999999999999974 5688999999999999999999999999775
No 33
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=5.3e-20 Score=162.29 Aligned_cols=67 Identities=31% Similarity=0.542 Sum_probs=64.3
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIR 133 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 133 (193)
.|||+|||| +++|+.++||+|||+|++++|||+++.+.++++|+.|++||++|+||.+|+.||.++.
T Consensus 3 ~d~y~vLgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~ 69 (374)
T PRK14293 3 ADYYEILGV-SRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGE 69 (374)
T ss_pred CChhhhcCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccc
Confidence 699999999 9999999999999999999999999888899999999999999999999999998764
No 34
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1.2e-19 Score=159.80 Aligned_cols=67 Identities=31% Similarity=0.493 Sum_probs=64.2
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIR 133 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 133 (193)
.|||+|||| +++|+.++||+|||+|++++|||+++.+.++++|+.|++||++|+||.+|+.||.++.
T Consensus 2 ~d~y~~Lgv-~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~ 68 (371)
T PRK14292 2 MDYYELLGV-SRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGT 68 (371)
T ss_pred CChHHHcCC-CCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCC
Confidence 589999999 9999999999999999999999999888899999999999999999999999999764
No 35
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.6e-19 Score=153.99 Aligned_cols=68 Identities=34% Similarity=0.485 Sum_probs=65.7
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
.|||+|||| +++|+..|||+||++|+++||||.+...++.++|++|.+||+||+|+++|..||..+..
T Consensus 43 ~d~Y~vLgv-~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~ 110 (288)
T KOG0715|consen 43 EDYYKVLGV-SRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLE 110 (288)
T ss_pred cchhhhhCc-CCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhh
Confidence 499999999 99999999999999999999999999999999999999999999999999999988764
No 36
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.79 E-value=2e-19 Score=120.25 Aligned_cols=62 Identities=35% Similarity=0.656 Sum_probs=59.3
Q ss_pred chhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCch--HHHHHHHHHHHHHHcCCCchhhhhh
Q 048108 67 TLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVA--ADGAFKLIRSANNVLTDPGKRKAFD 129 (193)
Q Consensus 67 d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsd~~~R~~YD 129 (193)
|||+|||| +++++.++||++|+++++.+|||+++... +.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl-~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGL-PPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTS-TTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCC-CCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 69999999 99999999999999999999999988755 8899999999999999999999998
No 37
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.2e-19 Score=153.57 Aligned_cols=68 Identities=40% Similarity=0.552 Sum_probs=65.3
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
.|||+|||| +++||.++||+|||+|+++||||+++.+.++++|+.|++||++|+||.+|+.||.++..
T Consensus 4 ~d~y~vLgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 4 KDYYAILGV-PKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence 699999999 99999999999999999999999998888999999999999999999999999998764
No 38
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.4e-19 Score=158.55 Aligned_cols=68 Identities=35% Similarity=0.529 Sum_probs=65.1
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
.|||+|||| +++|+.++||+|||+|+++||||+++.+.++++|+.|++||+||+||.+|+.||.++..
T Consensus 3 ~d~Y~~Lgv-~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~ 70 (382)
T PRK14291 3 KDYYEILGV-SRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHA 70 (382)
T ss_pred CCHHHhhCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence 699999999 99999999999999999999999998888999999999999999999999999998754
No 39
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=7.3e-19 Score=146.09 Aligned_cols=69 Identities=38% Similarity=0.606 Sum_probs=65.7
Q ss_pred ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS-VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
..|+|+|||| +++|+.++||++||+|++++|||++++ |++.++|+.||+||+||+||.+|..||.++..
T Consensus 30 ~~~LYdVLgl-~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~ 99 (279)
T KOG0716|consen 30 RLDLYDVLGL-PKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGEL 99 (279)
T ss_pred hhHHHHHhCC-CcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhH
Confidence 4789999999 999999999999999999999999986 88999999999999999999999999999754
No 40
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3e-18 Score=145.95 Aligned_cols=69 Identities=33% Similarity=0.505 Sum_probs=66.0
Q ss_pred ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
..|||.|||| +.+++..+|+++||+.++++|||||+ +|.|.+.|+.|.+||+||+|+.+|..||..+..
T Consensus 4 ~~dyY~lLgi-~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~ 73 (296)
T KOG0691|consen 4 DTDYYDLLGI-SEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKS 73 (296)
T ss_pred cchHHHHhCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 3799999999 99999999999999999999999998 588999999999999999999999999999875
No 41
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.73 E-value=5e-18 Score=146.11 Aligned_cols=67 Identities=28% Similarity=0.536 Sum_probs=64.2
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIR 133 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 133 (193)
.|||+|||| +++++.++||+|||+|+++||||+++.+.++++|+.|++||++|+||.+|+.||..+.
T Consensus 4 ~d~y~~Lgv-~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 4 KDYYAIMGV-KPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred CChHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 699999999 9999999999999999999999999878899999999999999999999999999764
No 42
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.70 E-value=3.2e-17 Score=107.86 Aligned_cols=58 Identities=41% Similarity=0.676 Sum_probs=54.2
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC--CchHHHHHHHHHHHHHHcCCCch
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS--SVAADGAFKLIRSANNVLTDPGK 124 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~--~~~a~~~f~~i~~Ay~vLsd~~~ 124 (193)
.|||+|||| +++++.++||++|+++++.+|||+++ .+.+.+.|..|++||++|+||.+
T Consensus 1 ~~~y~vLgl-~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGV-PRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 489999999 99999999999999999999999998 56788999999999999999853
No 43
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.70 E-value=1.9e-17 Score=156.90 Aligned_cols=68 Identities=26% Similarity=0.329 Sum_probs=65.3
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
.+||+|||| +++||..+||+|||+||+++|||+++.+.+..+|+.|++||+|||||.+|+.||.+|..
T Consensus 573 ~dYYdILGV-s~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~ 640 (1136)
T PTZ00341 573 TLFYDILGV-GVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYD 640 (1136)
T ss_pred CChHHHcCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhcccc
Confidence 899999999 99999999999999999999999998777889999999999999999999999998865
No 44
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.8e-17 Score=145.12 Aligned_cols=68 Identities=34% Similarity=0.569 Sum_probs=63.9
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCc----hHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSV----AADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~----~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
.|||.+|+| +++||.+||++|||++++.+||||..+| .|++.|+.|..||||||||.+|..||.++..
T Consensus 9 ~e~Ya~LNl-pkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~q 80 (546)
T KOG0718|consen 9 IELYALLNL-PKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQ 80 (546)
T ss_pred hhHHHHhCC-CcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhc
Confidence 589999999 9999999999999999999999998754 5789999999999999999999999998875
No 45
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.68 E-value=8.4e-17 Score=103.97 Aligned_cols=54 Identities=43% Similarity=0.664 Sum_probs=51.5
Q ss_pred chhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-chHHHHHHHHHHHHHHcCC
Q 048108 67 TLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS-VAADGAFKLIRSANNVLTD 121 (193)
Q Consensus 67 d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd 121 (193)
|||+|||| +++++.++||++|+++++++|||+.+. ..+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl-~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGV-PPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 79999999 999999999999999999999999986 6789999999999999986
No 46
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=4.7e-17 Score=132.75 Aligned_cols=70 Identities=34% Similarity=0.600 Sum_probs=64.6
Q ss_pred cccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC---chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS---VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 64 ~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~---~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
.+.|+|+|||| .++|+..+|++||++|++++|||+++. ..+.+.|++|+.||+||||.++|+.||..+.-
T Consensus 12 ~~~d~YevLGV-er~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i 84 (264)
T KOG0719|consen 12 NKKDLYEVLGV-ERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI 84 (264)
T ss_pred cccCHHHHhhh-cccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence 34699999999 999999999999999999999999963 46788999999999999999999999998865
No 47
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=3e-16 Score=126.82 Aligned_cols=70 Identities=29% Similarity=0.472 Sum_probs=65.6
Q ss_pred cccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS-VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 64 ~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
+.-|+|+|||| +++++..|||++||+|++++||||.+. .+.++.|..|++||+.|+|+..|..|..++++
T Consensus 97 ~~fDPyEILGl-~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~P 167 (230)
T KOG0721|consen 97 QKFDPYEILGL-DPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNP 167 (230)
T ss_pred hcCCcHHhhCC-CCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCC
Confidence 45899999999 999999999999999999999999987 56677799999999999999999999999987
No 48
>PHA03102 Small T antigen; Reviewed
Probab=99.65 E-value=2.8e-17 Score=127.87 Aligned_cols=113 Identities=13% Similarity=0.144 Sum_probs=83.0
Q ss_pred cchhhhhcCCCCCC--CHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhhcccccccCC
Q 048108 66 STLYKILAITDPQV--DISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRLNKVKLMSCS 143 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a--~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~~~~f~~~c~ 143 (193)
..+|+|||| +++| |.++||+|||++++++|||+++ .+++|+.|++||++|+|+.+|..||.++.....-+..-
T Consensus 5 ~~l~~vLGl-~~~A~~s~~eIKkAYr~la~~~HPDkgg---~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~- 79 (153)
T PHA03102 5 KELMDLLGL-PRSAWGNLPLMRKAYLRKCLEFHPDKGG---DEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEEEDV- 79 (153)
T ss_pred HHHHHHcCC-CCCCCCCHHHHHHHHHHHHHHHCcCCCc---hhHHHHHHHHHHHHHhhHHHhccccccCCccccccccc-
Confidence 578999999 9999 9999999999999999999974 45899999999999999999999999886532211100
Q ss_pred CCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCCc
Q 048108 144 CCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRR 185 (193)
Q Consensus 144 ~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~~ 185 (193)
=...+...+|+.++..|.+....|. ......-+|..|--+
T Consensus 80 -~~~~f~~~fg~~~~~~~~~~~~~c~-~~~~~~c~Ci~c~l~ 119 (153)
T PHA03102 80 -PSGYVGATFGDRVNALYCKDWDTCL-KNLSSLCKCIFCLLR 119 (153)
T ss_pred -HHHHhhhhcCCcchhhHhcchHHHH-HHHHHhCCCchhhhh
Confidence 0011123456667788888888883 222244556556443
No 49
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.61 E-value=8.9e-16 Score=142.81 Aligned_cols=68 Identities=38% Similarity=0.580 Sum_probs=64.6
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
.|||+|||| +++|+.++||++||+|++++|||+++.+.+.++|+.|++||++|+||.+|+.||.++..
T Consensus 2 ~DYYeVLGV-s~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~a 69 (871)
T TIGR03835 2 RDYYEVLGI-DRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHD 69 (871)
T ss_pred CChhHhcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhccc
Confidence 699999999 99999999999999999999999998888889999999999999999999999998754
No 50
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.6e-15 Score=121.41 Aligned_cols=66 Identities=36% Similarity=0.660 Sum_probs=62.2
Q ss_pred ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCch--HHHHHHHHHHHHHHcCCCchhhhhhhh
Q 048108 65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVA--ADGAFKLIRSANNVLTDPGKRKAFDNR 131 (193)
Q Consensus 65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsd~~~R~~YD~~ 131 (193)
..+||+|||| +++|+..+|+++||++++++|||+++... +.+.|+.|++||++|+|+.+|..||..
T Consensus 5 ~~~~y~iLgv-~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 5 LLDYYEILGV-PPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhHHHHhCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 3799999999 99999999999999999999999998543 899999999999999999999999986
No 51
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.54 E-value=1.8e-14 Score=114.51 Aligned_cols=68 Identities=18% Similarity=0.344 Sum_probs=58.9
Q ss_pred cchhhhhcCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCch------HHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 66 STLYKILAITDPQ--VDISVIKKQFKKMALMLHPDKNSSVA------ADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 66 ~d~Y~vLgv~~~~--a~~~~Ik~aYr~l~~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
.|||+|||| ++. ++..+|+++||++++++|||+..+.. +.+.|..|++||++|+||.+|..|+-.+..
T Consensus 1 ~~yf~llgl-~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g 76 (171)
T PRK05014 1 MDYFTLFGL-PARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHG 76 (171)
T ss_pred CCHHHHCCC-CCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcC
Confidence 489999999 665 68899999999999999999976422 456799999999999999999999977653
No 52
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.52 E-value=2.2e-14 Score=113.46 Aligned_cols=68 Identities=21% Similarity=0.363 Sum_probs=58.4
Q ss_pred cchhhhhcCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCch----HHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 66 STLYKILAITDPQ--VDISVIKKQFKKMALMLHPDKNSSVA----ADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 66 ~d~Y~vLgv~~~~--a~~~~Ik~aYr~l~~~~HPDk~~~~~----a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
.|||+|||| ++. ++..+|+++||++++++|||+..+.. +.+.+..|++||++|+||.+|..|+..+..
T Consensus 2 ~~yf~llgl-~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g 75 (166)
T PRK01356 2 QNYFQLLGL-PQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQN 75 (166)
T ss_pred CCHHHHcCC-CCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccC
Confidence 589999999 665 78999999999999999999987432 224578999999999999999999887753
No 53
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.48 E-value=8.9e-14 Score=110.62 Aligned_cols=69 Identities=16% Similarity=0.350 Sum_probs=60.1
Q ss_pred ccchhhhhcCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCch------HHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 65 KSTLYKILAITDPQ--VDISVIKKQFKKMALMLHPDKNSSVA------ADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 65 ~~d~Y~vLgv~~~~--a~~~~Ik~aYr~l~~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
..|||++||| ++. .+..+|+++||++++++|||+..... +.+.|..||+||++|+||.+|..|+-.+..
T Consensus 3 ~~~~F~l~~l-~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g 79 (173)
T PRK00294 3 TPCHFALFDL-QPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSG 79 (173)
T ss_pred CCChhhhcCc-CCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcC
Confidence 4799999999 555 67899999999999999999986422 456799999999999999999999987764
No 54
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.48 E-value=1e-13 Score=110.61 Aligned_cols=69 Identities=19% Similarity=0.290 Sum_probs=58.6
Q ss_pred ccchhhhhcCCCC--CCCHHHHHHHHHHHHHhcCCCCCCC-chH-----HHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 65 KSTLYKILAITDP--QVDISVIKKQFKKMALMLHPDKNSS-VAA-----DGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 65 ~~d~Y~vLgv~~~--~a~~~~Ik~aYr~l~~~~HPDk~~~-~~a-----~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
+.|||+|||| ++ +++..+|+++||++++++|||+.+. +.. .+.+..||+||++|+||.+|..|+..+..
T Consensus 5 ~~dyf~llgl-p~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G 81 (176)
T PRK03578 5 KDDHFSLFGL-PARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRG 81 (176)
T ss_pred CCCHHHHcCC-CCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcC
Confidence 4799999999 65 4689999999999999999999864 222 33468999999999999999999987653
No 55
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=8.8e-14 Score=115.10 Aligned_cols=70 Identities=24% Similarity=0.425 Sum_probs=66.5
Q ss_pred ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhhc
Q 048108 65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRLN 135 (193)
Q Consensus 65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~~ 135 (193)
..|.|+|||| .++++..+|.+|||+|++++|||+++.+++.+.|..|..||++|.|.+.|..||-.++.+
T Consensus 32 ~enCYdVLgV-~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyaldhp 101 (329)
T KOG0722|consen 32 AENCYDVLGV-AREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALDHP 101 (329)
T ss_pred chhHHHHhhh-hhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhcCc
Confidence 3899999999 999999999999999999999999999988999999999999999999999999888763
No 56
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.4e-13 Score=112.77 Aligned_cols=68 Identities=44% Similarity=0.613 Sum_probs=63.1
Q ss_pred ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCc--hHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108 65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSV--AADGAFKLIRSANNVLTDPGKRKAFDNRIR 133 (193)
Q Consensus 65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~--~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 133 (193)
..|+|+|||| .+.|+.++|++||+++++++|||+++.+ .++.+|++|.+||++|+||.+|..||..+.
T Consensus 2 ~~d~~~~l~i-~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGI-ARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCc-cccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 3699999999 8999999999999999999999998876 566689999999999999999999999986
No 57
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.37 E-value=1.7e-12 Score=109.83 Aligned_cols=55 Identities=25% Similarity=0.376 Sum_probs=50.3
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC--------chHHHHHHHHHHHHHHcCC
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS--------VAADGAFKLIRSANNVLTD 121 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~--------~~a~~~f~~i~~Ay~vLsd 121 (193)
.|+|+|||| ++++|.++||++||+|++++|||+... +.++++|+.|++||++|+.
T Consensus 200 ~~ay~vLgv-~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGV-SESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCC-CCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 799999999 999999999999999999999999642 3478899999999999975
No 58
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.35 E-value=1.3e-12 Score=97.03 Aligned_cols=52 Identities=31% Similarity=0.454 Sum_probs=47.7
Q ss_pred ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcC
Q 048108 65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLT 120 (193)
Q Consensus 65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLs 120 (193)
..++|+|||| ++++|.++||++||+|++++|||+++ ..+.|+.|++||++|.
T Consensus 64 ~~eAy~ILGv-~~~As~~eIkkaYRrLa~~~HPDkgG---s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNI-SPTASKERIREAHKQLMLRNHPDNGG---STYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCC-CCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHHh
Confidence 3799999999 99999999999999999999999963 4578999999999985
No 59
>PHA02624 large T antigen; Provisional
Probab=99.29 E-value=2.1e-12 Score=118.88 Aligned_cols=64 Identities=19% Similarity=0.302 Sum_probs=58.4
Q ss_pred hcccccchhhhhcCCCCCC--CHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhh
Q 048108 61 LSETKSTLYKILAITDPQV--DISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAF 128 (193)
Q Consensus 61 ~~~~~~d~Y~vLgv~~~~a--~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~Y 128 (193)
+.+...++|+|||| +++| +.++||+|||++++++|||+++ ++++|+.|++||++|+|+.+|..|
T Consensus 6 tree~~elyelLGL-~~~A~gs~~eIKkAYRkLAkkyHPDKgG---deekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 6 SREESKELMDLLGL-PMAAWGNLPLMRKAYLRKCKEYHPDKGG---DEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred chHHHHHHHHHcCC-CCCCCCCHHHHHHHHHHHHHHHCcCCCC---cHHHHHHHHHHHHHHhcHHHhhhc
Confidence 34445799999999 9999 9999999999999999999974 468999999999999999999998
No 60
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=4.7e-12 Score=105.82 Aligned_cols=107 Identities=23% Similarity=0.235 Sum_probs=87.5
Q ss_pred ccchhhhhcCC--CCCCCHHHHHHHHHHHHHhcCCCCCC---CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhhccccc
Q 048108 65 KSTLYKILAIT--DPQVDISVIKKQFKKMALMLHPDKNS---SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRLNKVKL 139 (193)
Q Consensus 65 ~~d~Y~vLgv~--~~~a~~~~Ik~aYr~l~~~~HPDk~~---~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~~~~f~ 139 (193)
+.|+|.+|||+ ...+++.+|.++.++.+.+||||+.. +.+..+.|+.|+.||+||+|+.+|..||.-....+.
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~adv-- 119 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDADV-- 119 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccccCC--
Confidence 38999999996 56789999999999999999999973 456789999999999999999999999976543222
Q ss_pred ccCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCc
Q 048108 140 MSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQ 180 (193)
Q Consensus 140 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~ 180 (193)
.-|.-+.+++ |+..|...+.+-.+++..++|+-.
T Consensus 120 -ppp~~~t~~~------Ffe~w~pvFe~earFSkKqPvPsL 153 (379)
T COG5269 120 -PPPRIYTPDE------FFEVWEPVFEREARFSKKQPVPSL 153 (379)
T ss_pred -CCccCCCchh------HHHHHHHHHHhhhhccccCCCCCC
Confidence 2344555666 999999988888888887777543
No 61
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.21 E-value=3.3e-11 Score=95.92 Aligned_cols=68 Identities=19% Similarity=0.284 Sum_probs=58.5
Q ss_pred cchhhhhcCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCch------HHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108 66 STLYKILAIT-DPQVDISVIKKQFKKMALMLHPDKNSSVA------ADGAFKLIRSANNVLTDPGKRKAFDNRIR 133 (193)
Q Consensus 66 ~d~Y~vLgv~-~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 133 (193)
.|||++|||| ....+...++++|++|.+.+|||+..... +.+....||+||.+|+||.+|+.|=-.+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 5999999994 44589999999999999999999986533 34457899999999999999999987766
No 62
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=5.1e-11 Score=95.63 Aligned_cols=64 Identities=33% Similarity=0.584 Sum_probs=58.6
Q ss_pred ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC--chHHHHHHHHHHHHHHcCCCchhhhhh
Q 048108 65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS--VAADGAFKLIRSANNVLTDPGKRKAFD 129 (193)
Q Consensus 65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~--~~a~~~f~~i~~Ay~vLsd~~~R~~YD 129 (193)
..|+|+||.| .|..+.++||+.||+|+++.|||||++ +.|..+|..|.+||..|-|+..|..-+
T Consensus 52 nLNpfeVLqI-dpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 52 NLNPFEVLQI-DPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred ccChHHHHhc-CCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 3899999999 999999999999999999999999995 678899999999999999998766544
No 63
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.18 E-value=4.4e-11 Score=105.94 Aligned_cols=70 Identities=29% Similarity=0.425 Sum_probs=64.3
Q ss_pred cccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC------chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS------VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 64 ~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~------~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
+.-|+|+|||| +.+++..+||++||+|+.++||||.+. ..-++.+..|++||+.|+|...|..|-.+|.+
T Consensus 96 ~~fDPyEILGI-~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtP 171 (610)
T COG5407 96 RGFDPYEILGI-DQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTP 171 (610)
T ss_pred cCCChHHhhcc-cCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCC
Confidence 44899999999 999999999999999999999999875 34578899999999999999999999999876
No 64
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.07 E-value=2.8e-10 Score=89.33 Aligned_cols=56 Identities=23% Similarity=0.287 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCc------hHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 79 VDISVIKKQFKKMALMLHPDKNSSV------AADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 79 a~~~~Ik~aYr~l~~~~HPDk~~~~------~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
.+..+|+++|+++++++|||+.++. .+.+.|..|++||++|+||.+|..|+-.+..
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g 64 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHG 64 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcC
Confidence 4778999999999999999996542 2567899999999999999999999988864
No 65
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=2.2e-07 Score=89.65 Aligned_cols=53 Identities=26% Similarity=0.450 Sum_probs=47.0
Q ss_pred cchhhhhcCC---CCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcC
Q 048108 66 STLYKILAIT---DPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLT 120 (193)
Q Consensus 66 ~d~Y~vLgv~---~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLs 120 (193)
.+-|+||.|+ .+....+.||++|++|+.+||||||| +..++|..|++||+.|+
T Consensus 1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP--EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP--EGREMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHHH
Confidence 6789999996 34445689999999999999999996 77899999999999998
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=3.3e-07 Score=75.56 Aligned_cols=58 Identities=28% Similarity=0.452 Sum_probs=53.1
Q ss_pred ccccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHH-HcCC
Q 048108 63 ETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANN-VLTD 121 (193)
Q Consensus 63 ~~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~-vLsd 121 (193)
+.-..+|.|||| ..+++.++++.+|..|++++|||.+......+.|.+|.+||. ||+.
T Consensus 44 e~~~e~fril~v-~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 44 EKIMECFRILGV-EEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHHHhcc-cccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 334899999999 999999999999999999999999998888899999999998 7764
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.7e-06 Score=63.04 Aligned_cols=54 Identities=26% Similarity=0.403 Sum_probs=46.4
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCc
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPG 123 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~ 123 (193)
..--.|||| +++++.+.||.++|++-+..|||+.++|--. ..|++|+++|....
T Consensus 56 ~EA~lIL~v-~~s~~k~KikeaHrriM~~NHPD~GGSPYlA---sKINEAKdlLe~~~ 109 (112)
T KOG0723|consen 56 REAALILGV-TPSLDKDKIKEAHRRIMLANHPDRGGSPYLA---SKINEAKDLLEGTS 109 (112)
T ss_pred HHHHHHhCC-CccccHHHHHHHHHHHHHcCCCcCCCCHHHH---HHHHHHHHHHhccc
Confidence 455679999 9999999999999999999999999887543 45999999997543
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=6.4e-05 Score=58.43 Aligned_cols=70 Identities=20% Similarity=0.351 Sum_probs=56.8
Q ss_pred ccchhhhhcCC-CCCCCHHHHHHHHHHHHHhcCCCCCCC------chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 65 KSTLYKILAIT-DPQVDISVIKKQFKKMALMLHPDKNSS------VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 65 ~~d~Y~vLgv~-~~~a~~~~Ik~aYr~l~~~~HPDk~~~------~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
..+||.++|.. .....++.++.-|.-...++|||+... .-+.+....|++||.+|.||-.|+.|=..+..
T Consensus 7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g 83 (168)
T KOG3192|consen 7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKG 83 (168)
T ss_pred HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 37899999874 445566677778999999999999553 23567789999999999999999999877654
No 69
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=97.53 E-value=0.00018 Score=65.29 Aligned_cols=71 Identities=23% Similarity=0.333 Sum_probs=53.8
Q ss_pred CccHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCch--------HHHHHHHHHHHHH
Q 048108 46 LPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVA--------ADGAFKLIRSANN 117 (193)
Q Consensus 46 ~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~--------a~~~f~~i~~Ay~ 117 (193)
..+|+.||..++..|+.+. . ++-.++ ..-.+.++||++|||.+|..||||.+..+ +++.|-.+++||.
T Consensus 371 E~NIRALLSTLh~VLW~es--~-WqpVsl-tDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn 446 (453)
T KOG0431|consen 371 EGNIRALLSTLHYVLWPES--G-WQPVSL-TDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWN 446 (453)
T ss_pred cccHHHHHHHHhHhhcCcc--C-cccCch-hhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHH
Confidence 4469999999999998853 3 344466 66789999999999999999999987532 4555667777776
Q ss_pred HcC
Q 048108 118 VLT 120 (193)
Q Consensus 118 vLs 120 (193)
...
T Consensus 447 ~f~ 449 (453)
T KOG0431|consen 447 KFN 449 (453)
T ss_pred hhh
Confidence 543
No 70
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.18 E-value=0.0014 Score=36.99 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
|+.+..+|..++..|++++|++.++++.+++|+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 5678899999999999999999999999999973
No 71
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.16 E-value=0.0014 Score=37.35 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD 45 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~ 45 (193)
|..+..+|..++..|+++.|+..+++|.+++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 567899999999999999999999999999996
No 72
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0016 Score=51.73 Aligned_cols=53 Identities=25% Similarity=0.394 Sum_probs=46.1
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC--------chHHHHHHHHHHHHHHc
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS--------VAADGAFKLIRSANNVL 119 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~--------~~a~~~f~~i~~Ay~vL 119 (193)
.+.|.+||+ ...++..+|+++|+++....|||+-.. ..+.++++.|++||+.+
T Consensus 113 ~~~l~~l~~-~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGV-EIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcC-chhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 689999999 999999999999999999999998543 24677888999998753
No 73
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.72 E-value=0.0041 Score=37.84 Aligned_cols=40 Identities=25% Similarity=0.237 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHH
Q 048108 14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYF 53 (193)
Q Consensus 14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l 53 (193)
+.++.+|..+...|++++|++.++++.+.+|+...+...+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 4577899999999999999999999999999987655444
No 74
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.38 E-value=0.0024 Score=41.90 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTAC 56 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~ 56 (193)
.|..+..+|..++..|+++.|+..+.++..++|+...+--.+..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~ 46 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLA 46 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 578899999999999999999999999999999986544444444
No 75
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.34 E-value=0.0055 Score=40.19 Aligned_cols=41 Identities=24% Similarity=0.288 Sum_probs=37.5
Q ss_pred ccccCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 048108 4 MLKNLVKLAAEKARDAAEEYFKLQ-NIDMAIKTLKAAKEFNP 44 (193)
Q Consensus 4 ~~~e~~~~ea~~~~~~A~~~~~~~-d~~~A~~~~~~a~~l~p 44 (193)
-.++.|++.+..+..+|..++..| ++++|+.++.++.+++|
T Consensus 28 ~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 28 KAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 346678889999999999999999 79999999999999998
No 76
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.21 E-value=0.057 Score=47.76 Aligned_cols=107 Identities=18% Similarity=0.211 Sum_probs=76.2
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccc----cchhhhhcCCCCCCCHH
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETK----STLYKILAITDPQVDIS 82 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~----~d~Y~vLgv~~~~a~~~ 82 (193)
-.++.++++-++++..+|..|++..|+..|..|..++|+. ...+...+.+.++-.+. .|+=.||.+ .|+....
T Consensus 32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~--Y~aifrRaT~yLAmGksk~al~Dl~rVlel-KpDF~~A 108 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN--YQAIFRRATVYLAMGKSKAALQDLSRVLEL-KPDFMAA 108 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh--HHHHHHHHHHHhhhcCCccchhhHHHHHhc-CccHHHH
Confidence 3578899999999999999999999999999999999987 45666666666654433 888889988 8877665
Q ss_pred HHHHHH--------------HHHHHhcCCCCCCCchHHHHHHHHHHHH
Q 048108 83 VIKKQF--------------KKMALMLHPDKNSSVAADGAFKLIRSAN 116 (193)
Q Consensus 83 ~Ik~aY--------------r~l~~~~HPDk~~~~~a~~~f~~i~~Ay 116 (193)
-|.+.- -+.++...|..+...++.++...|.+-+
T Consensus 109 RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~ 156 (504)
T KOG0624|consen 109 RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHW 156 (504)
T ss_pred HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHH
Confidence 554432 2234556665554444444444444433
No 77
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.00 E-value=0.012 Score=38.87 Aligned_cols=48 Identities=25% Similarity=0.239 Sum_probs=38.2
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHH
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYF 53 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l 53 (193)
+..+++....+..+|..++..|++.+|+..++++..+.|+...+..+.
T Consensus 22 l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 22 LELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 445677788888889999999999999999999999999876554443
No 78
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.98 E-value=0.045 Score=35.11 Aligned_cols=49 Identities=16% Similarity=0.040 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc
Q 048108 15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE 63 (193)
Q Consensus 15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~ 63 (193)
.+.-+|..+.+.|+|+.|+++...+.++.|+...+..+...++..+..+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~kd 51 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQKD 51 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhcc
Confidence 4556788999999999999999999999999998888888887665543
No 79
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.003 Score=50.21 Aligned_cols=66 Identities=18% Similarity=0.315 Sum_probs=49.8
Q ss_pred chhhhhcCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCch------HHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108 67 TLYKILAITDPQ--VDISVIKKQFKKMALMLHPDKNSSVA------ADGAFKLIRSANNVLTDPGKRKAFDNRIR 133 (193)
Q Consensus 67 d~Y~vLgv~~~~--a~~~~Ik~aYr~l~~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 133 (193)
|++..+|+ .+. ...+.++..|+.+.+.+|||+..... +.+.+..++.||.+|.||-+|..|=....
T Consensus 2 ~~~~~~~~-~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGL-PRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred Cccccccc-HHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 34445555 332 24556899999999999999987533 23468899999999999999999976655
No 80
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.92 E-value=0.019 Score=32.28 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD 45 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~ 45 (193)
|+.+..+|..+...||++.|+..+.++.+++|+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 467889999999999999999999999999983
No 81
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=95.72 E-value=0.026 Score=42.79 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=36.4
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcC
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLT 120 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLs 120 (193)
..-..|||| ++..+.++|.+.|.+|-...+|+++++. -.-..|..|.+.|.
T Consensus 58 ~EA~~ILnv-~~~~~~eeI~k~y~~Lf~~Nd~~kGGSf---YLQSKV~rAKErl~ 108 (127)
T PF03656_consen 58 DEARQILNV-KEELSREEIQKRYKHLFKANDPSKGGSF---YLQSKVFRAKERLE 108 (127)
T ss_dssp HHHHHHHT---G--SHHHHHHHHHHHHHHT-CCCTS-H---HHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCccCHHHHHHHHHHHHhccCCCcCCCH---HHHHHHHHHHHHHH
Confidence 355789999 9999999999999999999999998654 34445777777765
No 82
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.64 E-value=0.017 Score=37.40 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=15.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 18 DAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 18 ~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
..|..++..|++++|+..++++...+|...
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~ 31 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNP 31 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Confidence 344555555555555555555555555543
No 83
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.54 E-value=0.013 Score=38.15 Aligned_cols=46 Identities=22% Similarity=0.189 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHH
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFT 54 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~ 54 (193)
+++..+..+.+|..++..|++++|...+.++...+|+.+.+..+++
T Consensus 21 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 21 NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3445556666777777777777777777777777777555555444
No 84
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.31 E-value=0.044 Score=30.29 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108 14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD 45 (193)
Q Consensus 14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~ 45 (193)
+.++.+|..+...|+++.|+..+++....+|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 35788999999999999999999999999996
No 85
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.00 E-value=0.029 Score=32.56 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=25.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 16 ARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 16 ~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
+..+|..+...|+|+.|+.+++++..+..++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~ 32 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALARDP 32 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 5789999999999999999999977665544
No 86
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.84 E-value=0.14 Score=44.17 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
.++..|+.++..+.++++.++|.+|+..|.+|..++|+..
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA 115 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA 115 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc
Confidence 3678999999999999999999999999999999999864
No 87
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.80 E-value=0.7 Score=38.51 Aligned_cols=97 Identities=15% Similarity=0.255 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccccc-hhhhhcCCCCCCCHHHHHHHHHHH--H
Q 048108 16 ARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKST-LYKILAITDPQVDISVIKKQFKKM--A 92 (193)
Q Consensus 16 ~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~~d-~Y~vLgv~~~~a~~~~Ik~aYr~l--~ 92 (193)
.+.+|..+++.+|++.|+..+++..+++|+.+.+...+=..-... .....+ +-..+.++...-++...++|+..+ .
T Consensus 72 ~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~-~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l 150 (243)
T PRK10866 72 QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN-MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL 150 (243)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh-hhcchhhhhhccCCCccccCHHHHHHHHHHHHHH
Confidence 456666666666666666666666666666665443221111000 000011 111233312233455566554433 2
Q ss_pred HhcCCCCCCCchHHHHHHHHH
Q 048108 93 LMLHPDKNSSVAADGAFKLIR 113 (193)
Q Consensus 93 ~~~HPDk~~~~~a~~~f~~i~ 113 (193)
..-+|+..-.+.+..+...|.
T Consensus 151 i~~yP~S~ya~~A~~rl~~l~ 171 (243)
T PRK10866 151 VRGYPNSQYTTDATKRLVFLK 171 (243)
T ss_pred HHHCcCChhHHHHHHHHHHHH
Confidence 344687765555555544443
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.66 E-value=0.36 Score=40.37 Aligned_cols=73 Identities=21% Similarity=0.191 Sum_probs=53.2
Q ss_pred CHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHHH
Q 048108 9 VKLA-AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQ 87 (193)
Q Consensus 9 ~~~e-a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~a 87 (193)
++.+ +..-+.+|..+|..||+..|+.-+++|.+.+|+.....-.++ -+|+-+|. . +.-..
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A------------~~Yq~~Ge-~------~~A~e 90 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRA------------HYYQKLGE-N------DLADE 90 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH------------HHHHHcCC-h------hhHHH
Confidence 4444 466789999999999999999999999999999964332222 35788887 3 33333
Q ss_pred HHHHHHhcCCCCC
Q 048108 88 FKKMALMLHPDKN 100 (193)
Q Consensus 88 Yr~l~~~~HPDk~ 100 (193)
+.+.++..+|+..
T Consensus 91 ~YrkAlsl~p~~G 103 (250)
T COG3063 91 SYRKALSLAPNNG 103 (250)
T ss_pred HHHHHHhcCCCcc
Confidence 3444777888764
No 89
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=94.66 E-value=0.054 Score=41.31 Aligned_cols=45 Identities=13% Similarity=0.027 Sum_probs=37.6
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID 50 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~ 50 (193)
...++..+..+..+|..+...|++++|+..+.++..++|.....-
T Consensus 51 l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~ 95 (144)
T PRK15359 51 VMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPV 95 (144)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 345677788889999999999999999999999999999875433
No 90
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.052 Score=48.35 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRV 58 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~ 58 (193)
+...-.+.+++.+++..++|+.|+.++++|+.+.|+...|+.-|.++..
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3455667777777777777777777777777777777766666666654
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.19 Score=46.35 Aligned_cols=110 Identities=15% Similarity=0.195 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc----cccchhhhhcCCCCCCCHHHH
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE----TKSTLYKILAITDPQVDISVI 84 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~----~~~d~Y~vLgv~~~~a~~~~I 84 (193)
|++.+...-++|.++++.+.+..|++++.++.+++|+.. ...+.....+..-. .-..|++-|.+ +.+..++
T Consensus 388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~--kgy~RKg~al~~mk~ydkAleay~eale~---dp~~~e~ 462 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFI--KAYLRKGAALRAMKEYDKALEAYQEALEL---DPSNAEA 462 (539)
T ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CchhHHH
Confidence 466667777777777777777777777777777777652 33333322221110 11567777766 5677888
Q ss_pred HHHHHHHHHhcCCCCCCCchHHHHHHHHH---HHHHHcCCCchhhh
Q 048108 85 KKQFKKMALMLHPDKNSSVAADGAFKLIR---SANNVLTDPGKRKA 127 (193)
Q Consensus 85 k~aYr~l~~~~HPDk~~~~~a~~~f~~i~---~Ay~vLsd~~~R~~ 127 (193)
-..|++.....|-|..+. +..+... +--.+|+||..|..
T Consensus 463 ~~~~~rc~~a~~~~~~~e----e~~~r~~~dpev~~il~d~~m~~~ 504 (539)
T KOG0548|consen 463 IDGYRRCVEAQRGDETPE----ETKRRAMADPEVQAILQDPAMRQI 504 (539)
T ss_pred HHHHHHHHHHhhcCCCHH----HHHHhhccCHHHHHHHcCHHHHHH
Confidence 899999888775555442 2222221 23345788777743
No 92
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.26 E-value=0.21 Score=41.25 Aligned_cols=75 Identities=20% Similarity=0.221 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc----cccchhhhhcCCCCCCCHHHHHHH
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE----TKSTLYKILAITDPQVDISVIKKQ 87 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~----~~~d~Y~vLgv~~~~a~~~~Ik~a 87 (193)
.+..+.++|.+.++.+.++.|+....||..|+|+.. ..+...+..+-..+ .-.||-+||.+ .| +..+.+++
T Consensus 133 rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~--kAl~RRAeayek~ek~eealeDyKki~E~-dP--s~~ear~~ 207 (271)
T KOG4234|consen 133 RSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE--KALERRAEAYEKMEKYEEALEDYKKILES-DP--SRREAREA 207 (271)
T ss_pred HHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHh-Cc--chHHHHHH
Confidence 344555555555555555555555555555555542 22222222111111 11677777777 54 33355555
Q ss_pred HHHH
Q 048108 88 FKKM 91 (193)
Q Consensus 88 Yr~l 91 (193)
-++|
T Consensus 208 i~rl 211 (271)
T KOG4234|consen 208 IARL 211 (271)
T ss_pred HHhc
Confidence 4444
No 93
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=94.16 E-value=0.35 Score=41.79 Aligned_cols=35 Identities=23% Similarity=0.174 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
+..+..+|..++..|++++|+..+.++.+.+|...
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 214 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALAADPQCV 214 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCH
Confidence 33455666777777777777777777777776643
No 94
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=93.97 E-value=0.61 Score=37.54 Aligned_cols=48 Identities=13% Similarity=0.062 Sum_probs=40.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHH
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYF 53 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l 53 (193)
...|++.++.|..+|..++..|+++.|+..+.+|.+++|+...+.-.+
T Consensus 66 L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~l 113 (198)
T PRK10370 66 IRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAAL 113 (198)
T ss_pred HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 345677888999999999999999999999999999999986544333
No 95
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=93.91 E-value=0.72 Score=36.20 Aligned_cols=39 Identities=15% Similarity=-0.003 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
+...+.-++++|..+-..|+|.+|+..|.+|..++|+.+
T Consensus 65 Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp 103 (157)
T PRK15363 65 DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP 103 (157)
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 344455555555555555555555555555555555544
No 96
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.89 E-value=0.12 Score=26.71 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108 15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPD 45 (193)
Q Consensus 15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~ 45 (193)
.+..+|..++..++++.|...+.++..++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4678899999999999999999999998885
No 97
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=93.46 E-value=0.14 Score=33.02 Aligned_cols=42 Identities=19% Similarity=0.123 Sum_probs=35.9
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
.+.+++.+..+..+|..++..|++++|+..++++..++|+.+
T Consensus 24 l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 24 LKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 345577899999999999999999999999999999999863
No 98
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=93.15 E-value=0.2 Score=36.65 Aligned_cols=50 Identities=18% Similarity=0.094 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACR 57 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~ 57 (193)
.++.....+..+|..++..|+++.|...++++..++|+.....-.+..+.
T Consensus 46 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 46 YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 34556777888888888899999999999998888888765544444433
No 99
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=93.04 E-value=0.36 Score=37.22 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHh
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQ 60 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~ 60 (193)
+++++.+|...+..||+.-|..++..+...+|+...++++...+-..+
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~l 117 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQL 117 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999988888877664433
No 100
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=92.81 E-value=0.37 Score=36.21 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 048108 14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTAC 56 (193)
Q Consensus 14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~ 56 (193)
..+...++.++..|+++.|+..+.++..++|..+.+-..+..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~ 105 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRA 105 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4566777889999999999999999999999998766665544
No 101
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=92.73 E-value=0.24 Score=43.54 Aligned_cols=73 Identities=23% Similarity=0.164 Sum_probs=48.3
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhc--ccccchhhhhcCCCCCC
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLS--ETKSTLYKILAITDPQV 79 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~--~~~~d~Y~vLgv~~~~a 79 (193)
++.+++.+..+..+|..++..|+++.|+.++.+|..++|....+--.+..+-..+.. +....+-+.|.+ .++.
T Consensus 29 l~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l-~P~~ 103 (356)
T PLN03088 29 IDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASL-APGD 103 (356)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCCC
Confidence 445566778888999999999999999999999999999876443333333222211 112455566777 5543
No 102
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=92.70 E-value=0.98 Score=31.91 Aligned_cols=42 Identities=10% Similarity=0.007 Sum_probs=34.9
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
.+.|+++.......|..++..|++++|+..+....+.++...
T Consensus 15 ~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~ 56 (90)
T PF14561_consen 15 LAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE 56 (90)
T ss_dssp HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC
T ss_pred HHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc
Confidence 345778889999999999999999999999999999999873
No 103
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=92.48 E-value=0.82 Score=43.45 Aligned_cols=116 Identities=12% Similarity=0.102 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH--------------HHhhcccc-cchhhhh
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACR--------------VHQLSETK-STLYKIL 72 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~--------------~~~~~~~~-~d~Y~vL 72 (193)
.+++.+..+..+|..++..|++++|+..++++..++|....+...+..+- ..+..... ..++-.+
T Consensus 279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~ 358 (656)
T PRK15174 279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYA 358 (656)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 34455667778888899999999999999999999998765444433322 11111111 1112111
Q ss_pred cCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchh
Q 048108 73 AIT-DPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKR 125 (193)
Q Consensus 73 gv~-~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R 125 (193)
|.- ...-..++-...|++ ++..+|+..+. .-.++...+.++++.+..+.++
T Consensus 359 a~al~~~G~~deA~~~l~~-al~~~P~~~~~-~~~ea~~~~~~~~~~~~~~~~~ 410 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEH-YIQARASHLPQ-SFEEGLLALDGQISAVNLPPER 410 (656)
T ss_pred HHHHHHCCCHHHHHHHHHH-HHHhChhhchh-hHHHHHHHHHHHHHhcCCccch
Confidence 210 112234444555555 56677887653 3346778889999999888777
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=92.24 E-value=0.37 Score=38.82 Aligned_cols=46 Identities=9% Similarity=-0.026 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCccHHHHHH
Q 048108 9 VKLAAEKARDAAEEY-FKLQN--IDMAIKTLKAAKEFNPDLPNIDDYFT 54 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~-~~~~d--~~~A~~~~~~a~~l~p~~~~i~~~l~ 54 (193)
+++.+..+...|..+ +..|+ ++.|+..+.++.+++|+...+.-.+.
T Consensus 103 ~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA 151 (198)
T PRK10370 103 RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLA 151 (198)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 445556666666653 45555 36666666666666666654443333
No 105
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.21 E-value=0.73 Score=41.97 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=39.1
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
-+.+++.++.+.++|..++..|+|++|+..+++|..++|+...
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae 110 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE 110 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH
Confidence 3567788999999999999999999999999999999999753
No 106
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=91.79 E-value=0.13 Score=34.32 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=26.9
Q ss_pred ccccccCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCCcceEe-cccC
Q 048108 136 KVKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRRKIVI-LRNC 193 (193)
Q Consensus 136 ~~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~~~~v~-~~~c 193 (193)
......|+.|...+. .... ..-+.........|+.|+|+|.+| .++|
T Consensus 12 ~~~~~~C~~C~G~G~------~~~~-----~~~~~~~~~~~~~C~~C~G~G~~i~~~~C 59 (66)
T PF00684_consen 12 GKKPKTCPQCNGSGQ------VTRR-----QQTPGGVFQMQQTCPKCGGTGKIIEKDPC 59 (66)
T ss_dssp TTT-EE-TTSSSSSE------EEEE-----EESSSTTEEEEEE-TTTSSSSEE-TSSB-
T ss_pred CCCCcCCcCCCCeeE------EEEE-----EeCCCeEEEEEEECCCCcceeeEECCCCC
Confidence 344568888888875 1110 111223455668899999999999 8877
No 107
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.65 E-value=1.5 Score=33.93 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108 15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
..|.++..++..++++.|+.-+.+-.+|+|+.+.+
T Consensus 49 AqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 49 AQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 44566666666666666666666666666666543
No 108
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.42 E-value=0.51 Score=40.72 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=37.6
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 2 WRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 2 ~~~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
|..-++.++..|..+-++|..|.+.|.++.|+++.+.|..+||...
T Consensus 104 Y~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ys 149 (304)
T KOG0553|consen 104 YTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYS 149 (304)
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHH
Confidence 3344677788888888899999999999999999999999988763
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=91.17 E-value=0.72 Score=35.02 Aligned_cols=34 Identities=6% Similarity=-0.126 Sum_probs=30.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108 16 ARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 16 ~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
+..+|..++..|++++|+..+.++..++|.....
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a 60 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRA 60 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 5568999999999999999999999999987543
No 110
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=90.61 E-value=0.82 Score=33.36 Aligned_cols=46 Identities=17% Similarity=0.139 Sum_probs=40.3
Q ss_pred cccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108 5 LKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID 50 (193)
Q Consensus 5 ~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~ 50 (193)
.++.+++.+.....+|..++..|++++|+..+.++..++|....+.
T Consensus 9 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 54 (135)
T TIGR02552 9 LLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYW 54 (135)
T ss_pred HHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHH
Confidence 3567788889999999999999999999999999999999875443
No 111
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.42 E-value=0.88 Score=26.06 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNP 44 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p 44 (193)
|..+.++|..+...|++++|+.+++++..+.-
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 45567899999999999999999999987644
No 112
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.20 E-value=0.93 Score=27.88 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=25.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 17 RDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 17 ~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
+++|..|+.+||.++|+..++.... .++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~-~~~~ 31 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE-EGDE 31 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH-cCCH
Confidence 5789999999999999999999994 4443
No 113
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.02 E-value=0.11 Score=29.86 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=28.1
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHcCCHHHHH
Q 048108 2 WRMLKNLVKLAAEKARDAAEEYFKLQNIDMAI 33 (193)
Q Consensus 2 ~~~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~ 33 (193)
|+-..|.|++.++.+..+|..+...||++.|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34557888999999999999999999999986
No 114
>PRK11189 lipoprotein NlpI; Provisional
Probab=89.90 E-value=1 Score=38.34 Aligned_cols=40 Identities=18% Similarity=0.136 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
.+++.+..+..+|..+...|++++|+..+.++.+++|+..
T Consensus 93 l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~ 132 (296)
T PRK11189 93 LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 132 (296)
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 3444555666666677777777777777777777777653
No 115
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=89.77 E-value=0.91 Score=39.87 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108 14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
-.++..|..++..|+|+.|+..+.+|.+++|....+
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a 38 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAEL 38 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 357888999999999999999999999999987543
No 116
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=89.54 E-value=1.1 Score=29.67 Aligned_cols=33 Identities=21% Similarity=0.190 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
++-|..+..+|..+...|+++.|+.++++|..+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356778899999999999999999999999987
No 117
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=89.50 E-value=0.67 Score=29.79 Aligned_cols=34 Identities=32% Similarity=0.463 Sum_probs=27.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 048108 23 YFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTAC 56 (193)
Q Consensus 23 ~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~ 56 (193)
++..|++++|+..+.++...+|....+.-.+..+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 34 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQC 34 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4789999999999999999999986655544444
No 118
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.20 E-value=1.5 Score=39.20 Aligned_cols=76 Identities=16% Similarity=0.273 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc----cccchhhhhcCCCCCCCHHHHHHHHHH
Q 048108 15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE----TKSTLYKILAITDPQVDISVIKKQFKK 90 (193)
Q Consensus 15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~----~~~d~Y~vLgv~~~~a~~~~Ik~aYr~ 90 (193)
..+++|.+++++++|..|+....+++.++|.. +..+...-+.++... ...||-++|.+ .|+- .+|+....+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N--~KALyRrG~A~l~~~e~~~A~~df~ka~k~-~P~N--ka~~~el~~ 333 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNN--VKALYRRGQALLALGEYDLARDDFQKALKL-EPSN--KAARAELIK 333 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHhhccHHHHHHHHHHHHHh-CCCc--HHHHHHHHH
Confidence 35789999999999999999999999999998 466666666555433 23778888888 5533 666666666
Q ss_pred HHHhc
Q 048108 91 MALML 95 (193)
Q Consensus 91 l~~~~ 95 (193)
|..+.
T Consensus 334 l~~k~ 338 (397)
T KOG0543|consen 334 LKQKI 338 (397)
T ss_pred HHHHH
Confidence 65544
No 119
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=88.68 E-value=12 Score=33.05 Aligned_cols=40 Identities=18% Similarity=0.095 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID 50 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~ 50 (193)
+=|-.+-++|..++.+.|.+.|+..+.||.+.+|+...+.
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAs 217 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRAS 217 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehh
Confidence 4466777788888888888888888888888888864333
No 120
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.37 E-value=3.3 Score=34.74 Aligned_cols=95 Identities=16% Similarity=0.095 Sum_probs=64.5
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH--------------HHHHHHHHHHhhc---ccccchh
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI--------------DDYFTACRVHQLS---ETKSTLY 69 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i--------------~~~l~~~~~~~~~---~~~~d~Y 69 (193)
+.++.-...++.+|..+...|+.+.|.+.|++|..++|...++ .+-+..++..+.. ....+-|
T Consensus 63 ~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~ 142 (250)
T COG3063 63 EHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTL 142 (250)
T ss_pred HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhh
Confidence 3456677888999999999999999999999999999986432 1222222221111 1225556
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC
Q 048108 70 KILAITDPQVDISVIKKQFKKMALMLHPDKNS 101 (193)
Q Consensus 70 ~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~ 101 (193)
+-||+=.-.+...+-.+.|-+.++.+.|+..+
T Consensus 143 eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~ 174 (250)
T COG3063 143 ENLGLCALKAGQFDQAEEYLKRALELDPQFPP 174 (250)
T ss_pred hhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh
Confidence 66665122234456677888889999998875
No 121
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=88.18 E-value=0.61 Score=40.49 Aligned_cols=55 Identities=29% Similarity=0.398 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCC-----CchHHHHHHHHHHHHHHcCCCchhhhhhhhh
Q 048108 78 QVDISVIKKQFKKMALMLHPDKNS-----SVAADGAFKLIRSANNVLTDPGKRKAFDNRI 132 (193)
Q Consensus 78 ~a~~~~Ik~aYr~l~~~~HPDk~~-----~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~ 132 (193)
.++..+|..+|+..++..||++.. ....++-|+.|.+||.+|++...|..+|...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 356788999999999999999874 2345677999999999999876666666554
No 122
>PRK12370 invasion protein regulator; Provisional
Probab=88.12 E-value=5.3 Score=37.06 Aligned_cols=42 Identities=12% Similarity=-0.077 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
.+++.+..+..+|..+...|++++|...+++|.+++|+...+
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a 374 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADI 374 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 344555556667777888899999999999999999987543
No 123
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=88.09 E-value=1.8 Score=28.12 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=28.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHH
Q 048108 20 AEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYF 53 (193)
Q Consensus 20 A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l 53 (193)
+..++..+||+.|+..++++..++|.....-...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 35 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQR 35 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHH
Confidence 4678999999999999999999999976444333
No 124
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=87.60 E-value=0.18 Score=36.17 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=30.6
Q ss_pred cccccCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCCcce
Q 048108 137 VKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRRKI 187 (193)
Q Consensus 137 ~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~~~~ 187 (193)
.....|..|++.+. ..++....+.|+||++|++...
T Consensus 3 ~n~i~C~~C~~~H~---------------r~~t~r~~~~AR~C~~C~~~H~ 38 (94)
T PF14901_consen 3 SNTIRCDKCGGKHK---------------RIETDRPPSAARYCQDCKIRHP 38 (94)
T ss_pred cceeechhhCCeee---------------eEEecCchhhhHhHHHhhhhcc
Confidence 45578989999998 8888889999999999998753
No 125
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=87.00 E-value=0.77 Score=31.17 Aligned_cols=41 Identities=22% Similarity=0.371 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHH
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYF 53 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l 53 (193)
+...++.+|.+++..|+++.|+..+.+ ...+|....+.-++
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~ 64 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLL 64 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHH
Confidence 667788899999999999999999999 66777654444443
No 126
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.29 E-value=1.5 Score=36.34 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=40.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTAC 56 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~ 56 (193)
+|.|+.--.++.++|+.|-++..|+.|+.+|.+.+.++|....+++-+..+
T Consensus 161 iel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 161 IELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 455665556667789999999999999999999999999987666555444
No 127
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=86.29 E-value=12 Score=32.18 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
+++.....+.+|..++..|++++|+..+.++...+|..
T Consensus 210 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 210 DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 34456677788899999999999999999999888764
No 128
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=86.25 E-value=2.4 Score=39.68 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=35.4
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 2 WRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 2 ~~~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
|.|+-+.-.+.|..+.+.|..++..|+|+.|+..|.++..+.|+.
T Consensus 116 ~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~ 160 (615)
T TIGR00990 116 ANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP 160 (615)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch
Confidence 344433223457889999999999999999999999999999964
No 129
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.10 E-value=1.5 Score=40.45 Aligned_cols=37 Identities=27% Similarity=0.331 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
...|..+..++..++..|.|+.|+++|..|..++|+.
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e 148 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE 148 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC
Confidence 5678999999999999999999999999999999994
No 130
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=86.08 E-value=16 Score=29.22 Aligned_cols=36 Identities=25% Similarity=0.190 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
..+...+..|..++..|+++.|+..++++...+|..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~ 66 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS 66 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 345556666666666666666666666666666654
No 131
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=85.89 E-value=1.5 Score=26.02 Aligned_cols=30 Identities=23% Similarity=0.190 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
|+-+..+|+..+..++|+.|+.++.++..+
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 345678999999999999999999999875
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=85.71 E-value=7.5 Score=37.49 Aligned_cols=113 Identities=11% Similarity=0.038 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH--------------HHHHHHHHHHhhcc-cccchhhhhcCC
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI--------------DDYFTACRVHQLSE-TKSTLYKILAIT 75 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i--------------~~~l~~~~~~~~~~-~~~d~Y~vLgv~ 75 (193)
..++..+.+|+..++.|.+++|...++.+.++.|....+ ++-+..++..+..+ ...+.+-.++.-
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 357888899999999999999999999999999986432 33333333333332 123333333331
Q ss_pred -CCCCCHHHHHHHHHHHHHhcCCCCCCC-----------chHHHHHHHHHHHHHHcCCCch
Q 048108 76 -DPQVDISVIKKQFKKMALMLHPDKNSS-----------VAADGAFKLIRSANNVLTDPGK 124 (193)
Q Consensus 76 -~~~a~~~~Ik~aYr~l~~~~HPDk~~~-----------~~a~~~f~~i~~Ay~vLsd~~~ 124 (193)
..--..++--..|+++.. -|||.... ...+++.....+|.+..++-.+
T Consensus 164 l~~~g~~~~A~~~y~~~~~-~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~ 223 (694)
T PRK15179 164 WDEIGQSEQADACFERLSR-QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR 223 (694)
T ss_pred HHHhcchHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH
Confidence 122245666778999888 88874321 2345666667777777777663
No 133
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=85.51 E-value=1.7 Score=36.14 Aligned_cols=40 Identities=30% Similarity=0.328 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID 50 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~ 50 (193)
.++..+..+|..+.+.|+++.|++++++|.+++|..+.+.
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~ 183 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDAR 183 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 5678889999999999999999999999999999976543
No 134
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.39 E-value=1.7 Score=37.37 Aligned_cols=48 Identities=19% Similarity=0.060 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTA 55 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~ 55 (193)
-|+++++.|.-++..++..|++..|..-|.+|.++.|+.+++--.+..
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~ae 198 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAE 198 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 367889999999999999999999999999999999998654433333
No 135
>PRK11189 lipoprotein NlpI; Provisional
Probab=84.98 E-value=20 Score=30.39 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
.|..+..+|..+...|+++.|+..+.+|..++|+...+
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a 100 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADA 100 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 37889999999999999999999999999999997543
No 136
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=84.41 E-value=5.6 Score=27.66 Aligned_cols=32 Identities=25% Similarity=0.128 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
-+...|..++..|++++|...+.++...+|..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 35 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKS 35 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 34556666666666666666666666666543
No 137
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=84.30 E-value=4.1 Score=40.38 Aligned_cols=39 Identities=18% Similarity=0.065 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
+++....++.+|...++.+||.+|+.+|.+|.+++|...
T Consensus 160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~ 198 (1018)
T KOG2002|consen 160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACK 198 (1018)
T ss_pred CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC
Confidence 346678899999999999999999999999999999753
No 138
>PF13446 RPT: A repeated domain in UCH-protein
Probab=83.59 E-value=2.8 Score=27.19 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=23.9
Q ss_pred chhhhhcCCCCCCCHHHHHHHHHHHHH
Q 048108 67 TLYKILAITDPQVDISVIKKQFKKMAL 93 (193)
Q Consensus 67 d~Y~vLgv~~~~a~~~~Ik~aYr~l~~ 93 (193)
+-|++||| +++.+.+.|-.+|+....
T Consensus 6 ~Ay~~Lgi-~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGI-DEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCc-CCCCCHHHHHHHHHHHHH
Confidence 56999999 999999999999999877
No 139
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.44 E-value=1.7 Score=23.11 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 048108 14 EKARDAAEEYFKLQNIDMAIKTLK 37 (193)
Q Consensus 14 ~~~~~~A~~~~~~~d~~~A~~~~~ 37 (193)
...+.+|..++..||+++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356788999999999999998875
No 140
>PRK14285 chaperone protein DnaJ; Provisional
Probab=83.41 E-value=0.95 Score=40.08 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=9.8
Q ss_pred ccCccCCCcceEecccC
Q 048108 177 IFCQCQGRRKIVILRNC 193 (193)
Q Consensus 177 ~~C~~C~~~~~v~~~~c 193 (193)
..|+.|+|+|.++.++|
T Consensus 186 ~~C~~C~G~G~~~~~~C 202 (365)
T PRK14285 186 TTCPKCYGNGKIISNPC 202 (365)
T ss_pred eecCCCCCcccccCCCC
Confidence 45666666665555555
No 141
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=83.28 E-value=8.2 Score=36.10 Aligned_cols=39 Identities=13% Similarity=-0.039 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
++..+..+..++..++..|++++|+..++++..++|...
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 356667777777777777777777777777777777653
No 142
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=83.18 E-value=19 Score=27.69 Aligned_cols=39 Identities=10% Similarity=-0.100 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
+..+|......|..++..|++++|+..+.++..+.|+..
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 69 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN 69 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc
Confidence 456788899999999999999999999999999988764
No 143
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=82.95 E-value=3.1 Score=27.43 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFN 43 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~ 43 (193)
+-|..+.++|..+...|+++.|+.++++|..+.
T Consensus 44 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 44 DTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 348889999999999999999999999998763
No 144
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=82.71 E-value=12 Score=31.64 Aligned_cols=35 Identities=23% Similarity=0.126 Sum_probs=24.2
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 13 AEKARDAAEEY-FKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 13 a~~~~~~A~~~-~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
.....+.|..+ +..|+|++|+..+.+....+|+..
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~ 177 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST 177 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc
Confidence 44556666665 556778888888888888777753
No 145
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=82.67 E-value=9.3 Score=32.61 Aligned_cols=85 Identities=9% Similarity=0.160 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHHHHHHHHHh
Q 048108 15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALM 94 (193)
Q Consensus 15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~ 94 (193)
.........+..|||.+|+..+...+.+--...++.-+ +.+.. +-.+.+.. ..+.+...+.+++..
T Consensus 129 ~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~----~~L~~--~L~e~~~~--------i~~~ld~~l~~~~~~ 194 (291)
T PF10475_consen 129 QTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCV----RHLSS--QLQETLEL--------IEEQLDSDLSKVCQD 194 (291)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHH----HHHhH--HHHHHHHH--------HHHHHHHHHHHHHHh
Confidence 34455667889999999999999888875433332111 11100 00233322 334677788888876
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHHcCCC
Q 048108 95 LHPDKNSSVAADGAFKLIRSANNVLTDP 122 (193)
Q Consensus 95 ~HPDk~~~~~a~~~f~~i~~Ay~vLsd~ 122 (193)
+.| ..|..|.+||..|++.
T Consensus 195 Fd~---------~~Y~~v~~AY~lLgk~ 213 (291)
T PF10475_consen 195 FDP---------DKYSKVQEAYQLLGKT 213 (291)
T ss_pred CCH---------HHHHHHHHHHHHHhhh
Confidence 655 4677889999999854
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=82.52 E-value=4.3 Score=25.58 Aligned_cols=33 Identities=27% Similarity=0.426 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
.+..+|..++..|+++.|+..+.++....|...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 34 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA 34 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH
Confidence 357789999999999999999999999999875
No 147
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=81.58 E-value=1.8 Score=36.56 Aligned_cols=42 Identities=14% Similarity=0.125 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHH
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYF 53 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l 53 (193)
..+.+...+..++..||+..|+..+++|.++.|+.......+
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 333444466677777777777777777777777765444333
No 148
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=81.54 E-value=7.3 Score=31.22 Aligned_cols=32 Identities=28% Similarity=0.270 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 17 RDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 17 ~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
+.+|..++..|++..|+..+.++...+|+.+.
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPA 201 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcc
Confidence 47788999999999999999999999997643
No 149
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=81.50 E-value=2.5 Score=33.22 Aligned_cols=54 Identities=22% Similarity=0.143 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhh
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQL 61 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~ 61 (193)
.+++.++-....|.++|..|+.+.|++-+..|..+.-..+.-..+...++..+.
T Consensus 98 L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~ 151 (157)
T PRK15363 98 IKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQ 151 (157)
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence 456778888899999999999999999999999999666655666666655443
No 150
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=81.32 E-value=26 Score=27.97 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
+..+...|..++..|+|..|+..+.+....+|..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s 38 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS 38 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 4444555555555555555555555555555543
No 151
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=80.38 E-value=8.3 Score=34.02 Aligned_cols=42 Identities=24% Similarity=0.153 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
.+..||..+++.|......|..+.|.+.++.|..+.|+.+++
T Consensus 111 a~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~ 152 (472)
T KOG3824|consen 111 AKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQI 152 (472)
T ss_pred hhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHH
Confidence 456899999999999999999999999999999999998643
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=80.30 E-value=7.3 Score=27.05 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID 50 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~ 50 (193)
+...+.+|..++..|+++.|+..+.++...+|......
T Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 76 (119)
T TIGR02795 39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAP 76 (119)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCccc
Confidence 45677889999999999999999999999999875433
No 153
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.26 E-value=9.1 Score=36.76 Aligned_cols=46 Identities=22% Similarity=0.208 Sum_probs=40.4
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 2 WRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 2 ~~~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
|+...+.+++=|..+-++|..+-+.|++++|+..|..|.++.|+..
T Consensus 377 y~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fA 422 (966)
T KOG4626|consen 377 YLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFA 422 (966)
T ss_pred HHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHH
Confidence 4556788888999999999999999999999999999999999853
No 154
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=79.47 E-value=4.5 Score=29.88 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCC-ch----HHHHHHHHHHHHHHcCCCch
Q 048108 77 PQVDISVIKKQFKKMALMLHPDKNSS-VA----ADGAFKLIRSANNVLTDPGK 124 (193)
Q Consensus 77 ~~a~~~~Ik~aYr~l~~~~HPDk~~~-~~----a~~~f~~i~~Ay~vLsd~~~ 124 (193)
+..+..+++.+.|.+-++.|||.... |. .++.++.|+.-.+.|..+..
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~~ 56 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRKS 56 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccCC
Confidence 45567899999999999999997653 33 34558888888888876543
No 155
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=79.40 E-value=10 Score=26.09 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=32.9
Q ss_pred chhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHH
Q 048108 67 TLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKL 111 (193)
Q Consensus 67 d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~ 111 (193)
|.-.++|+ +|.++..||+.+-++.++++.--..++....++|..
T Consensus 4 NIk~Lfnf-dPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~ 47 (88)
T COG5552 4 NIKELFNF-DPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEA 47 (88)
T ss_pred chHHHhCC-CCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHH
Confidence 44578899 999999999999988888886555555444555543
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=79.28 E-value=3.5 Score=26.01 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
....+..+|..++..++++.|+..+.++..+.|...
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 68 (100)
T cd00189 33 NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68 (100)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 345677889999999999999999999999998875
No 157
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.05 E-value=10 Score=32.35 Aligned_cols=44 Identities=18% Similarity=0.115 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTA 55 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~ 55 (193)
+++.|...|+.|++.|+|+.|...++...-+.|..+-..+.+..
T Consensus 153 D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae 196 (289)
T KOG3060|consen 153 DQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAE 196 (289)
T ss_pred cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 67899999999999999999999999999999998755444443
No 158
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=78.69 E-value=27 Score=26.61 Aligned_cols=40 Identities=10% Similarity=-0.148 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
.....+..+..+|..++..|++++|+..+.++..+.|...
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~ 69 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY 69 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch
Confidence 3445789999999999999999999999999999987653
No 159
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=78.48 E-value=9.5 Score=27.59 Aligned_cols=44 Identities=14% Similarity=0.077 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHH
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFT 54 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~ 54 (193)
...+.+.+..+...+..||+..|.+.+.++.+..+.+. +.-+++
T Consensus 56 ~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~-l~~L~A 99 (108)
T PF07219_consen 56 RRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPL-LNYLLA 99 (108)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Confidence 45688999999999999999999999999988866553 555543
No 160
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=78.14 E-value=9.9 Score=34.58 Aligned_cols=91 Identities=18% Similarity=0.125 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccc--------------cchhhhhcC
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETK--------------STLYKILAI 74 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~--------------~d~Y~vLgv 74 (193)
|...+++++-++..+....+.+.|+..++++.+++|.......+...++++...... .-|=+-|++
T Consensus 199 d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i 278 (486)
T KOG0550|consen 199 DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI 278 (486)
T ss_pred ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC
Confidence 344567777778888889999999999999999999977655544444433322111 335567888
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCC
Q 048108 75 TDPQVDISVIKKQFKKMALMLHPDKNS 101 (193)
Q Consensus 75 ~~~~a~~~~Ik~aYr~l~~~~HPDk~~ 101 (193)
+|+ +.+..-+-|-..++..++-...
T Consensus 279 -dP~-n~~~naklY~nra~v~~rLgrl 303 (486)
T KOG0550|consen 279 -DPS-NKKTNAKLYGNRALVNIRLGRL 303 (486)
T ss_pred -Ccc-ccchhHHHHHHhHhhhcccCCc
Confidence 776 5555667788888877776654
No 161
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=78.14 E-value=4.3 Score=32.92 Aligned_cols=37 Identities=8% Similarity=0.126 Sum_probs=29.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHc
Q 048108 76 DPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVL 119 (193)
Q Consensus 76 ~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vL 119 (193)
+++|+.+||.+|+.++..+|-- .++.-..|..||+.+
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~g-------d~~~~~~IEaAYD~I 37 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAG-------DEKSREAIEAAYDAI 37 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHH
Confidence 4789999999999999998833 235566788899844
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=77.98 E-value=8.3 Score=29.72 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
.+..+..+|..+...|+++.|+..+.++..++|....
T Consensus 71 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 71 RSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS 107 (172)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 3567889999999999999999999999999998743
No 163
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=77.43 E-value=2.2 Score=25.75 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=22.7
Q ss_pred ccccCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCCcc
Q 048108 138 KLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRRK 186 (193)
Q Consensus 138 f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~~~ 186 (193)
+...|..|+..++ ...+-.. ...+.|+.||+..
T Consensus 4 Yey~C~~Cg~~fe---------------~~~~~~~-~~~~~CP~Cg~~~ 36 (42)
T PF09723_consen 4 YEYRCEECGHEFE---------------VLQSISE-DDPVPCPECGSTE 36 (42)
T ss_pred EEEEeCCCCCEEE---------------EEEEcCC-CCCCcCCCCCCCc
Confidence 4567888888887 3333333 6779999999843
No 164
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=77.23 E-value=7.9 Score=30.96 Aligned_cols=42 Identities=21% Similarity=0.259 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDY 52 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~ 52 (193)
-.....+.+|..++..||++.|+..+.+-.+.+|+.+.+...
T Consensus 40 ~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 40 YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 345678899999999999999999999999999999876544
No 165
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=77.16 E-value=6.8 Score=33.51 Aligned_cols=70 Identities=14% Similarity=0.096 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHHHHHHHH
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMA 92 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~ 92 (193)
..-+...|.+++..|+|++|...+..|...+|..++ -+...+ -.+..+|- +. ++-..|....
T Consensus 201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d--~LaNli----------v~~~~~gk-~~-----~~~~~~l~qL 262 (290)
T PF04733_consen 201 PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD--TLANLI----------VCSLHLGK-PT-----EAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH--HHHHHH----------HHHHHTT--TC-----HHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH--HHHHHH----------HHHHHhCC-Ch-----hHHHHHHHHH
Confidence 455678999999999999999999999999998753 222221 12333444 21 3344677777
Q ss_pred HhcCCCCC
Q 048108 93 LMLHPDKN 100 (193)
Q Consensus 93 ~~~HPDk~ 100 (193)
+..||++.
T Consensus 263 ~~~~p~h~ 270 (290)
T PF04733_consen 263 KQSNPNHP 270 (290)
T ss_dssp HHHTTTSH
T ss_pred HHhCCCCh
Confidence 77888864
No 166
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=76.80 E-value=6.2 Score=30.23 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
+.....+|..++..|+++.|+..+.++...+|..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~ 64 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD 64 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 5555666666666666666666666666666654
No 167
>PRK12370 invasion protein regulator; Provisional
Probab=76.46 E-value=3.5 Score=38.22 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=35.6
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
+.|++.+..+..+|..++..|++++|+..++++.+++|....
T Consensus 366 ~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~ 407 (553)
T PRK12370 366 LLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA 407 (553)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh
Confidence 445566667777888999999999999999999999999754
No 168
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=76.17 E-value=2.4 Score=38.87 Aligned_cols=57 Identities=14% Similarity=0.161 Sum_probs=41.5
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhc
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLS 62 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~ 62 (193)
||.++.-+...+.+|...++.+.+..|+..+++...+.|+.+.+.+++..++...+.
T Consensus 65 ie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 65 IELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred hhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 455566666777777777777777777778887777888777777777777755543
No 169
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=76.13 E-value=11 Score=21.89 Aligned_cols=32 Identities=16% Similarity=0.089 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCC
Q 048108 14 EKARDAAEEYFKLQNIDMAIKT--LKAAKEFNPD 45 (193)
Q Consensus 14 ~~~~~~A~~~~~~~d~~~A~~~--~~~a~~l~p~ 45 (193)
+.+...|-.....|++++|+.+ +.-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4577889999999999999999 4488888774
No 170
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=76.04 E-value=1.8 Score=23.37 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=8.5
Q ss_pred cccccCccCCCc
Q 048108 174 AKAIFCQCQGRR 185 (193)
Q Consensus 174 ~~~~~C~~C~~~ 185 (193)
..+.+|+.||.+
T Consensus 14 ~~~~fC~~CG~~ 25 (26)
T PF13248_consen 14 PDAKFCPNCGAK 25 (26)
T ss_pred cccccChhhCCC
Confidence 456888888853
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=76.01 E-value=10 Score=28.94 Aligned_cols=38 Identities=18% Similarity=-0.013 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
.+..+.++|..+...|+++.|+..+.+|.+++|.....
T Consensus 71 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~ 108 (168)
T CHL00033 71 RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQA 108 (168)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence 45678889999999999999999999999999987543
No 172
>PRK14291 chaperone protein DnaJ; Provisional
Probab=75.86 E-value=2 Score=38.30 Aligned_cols=12 Identities=25% Similarity=0.675 Sum_probs=7.0
Q ss_pred HHHHHHHhCCCC
Q 048108 35 TLKAAKEFNPDL 46 (193)
Q Consensus 35 ~~~~a~~l~p~~ 46 (193)
|...|+.++|+.
T Consensus 24 yr~la~~~HPD~ 35 (382)
T PRK14291 24 YRRLARKYHPDF 35 (382)
T ss_pred HHHHHHHHCCCC
Confidence 444556677764
No 173
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=74.96 E-value=25 Score=29.10 Aligned_cols=39 Identities=21% Similarity=0.148 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID 50 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~ 50 (193)
.+..+...|...+..|+|+.|+..+++....+|..+-+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~ 69 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQ 69 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 456677899999999999999999999999999886433
No 174
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=74.91 E-value=12 Score=37.56 Aligned_cols=52 Identities=17% Similarity=0.095 Sum_probs=37.6
Q ss_pred cccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 048108 5 LKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTAC 56 (193)
Q Consensus 5 ~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~ 56 (193)
.++.+++.+...+.+|..++..|++++|+..++++.+++|+......++..+
T Consensus 70 Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i 121 (987)
T PRK09782 70 IHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI 121 (987)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh
Confidence 3455566666677888888888888888888888888888766555555443
No 175
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=74.81 E-value=10 Score=24.89 Aligned_cols=31 Identities=26% Similarity=0.060 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKE 41 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~ 41 (193)
+.|..++..|...=+.|+++.|+..|..+..
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5788899999999999999999999887765
No 176
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=74.67 E-value=32 Score=31.91 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=56.2
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccccchhhhhcCCCCCCCH
Q 048108 2 WRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDI 81 (193)
Q Consensus 2 ~~~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~ 81 (193)
||-..|.|+.+-.+|.+++..+-.++-..=|+-++++|..+-|.+. ++..+. -+.|+-|+- .
T Consensus 387 YRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs---Rlw~aL---------G~CY~kl~~------~ 448 (559)
T KOG1155|consen 387 YRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDS---RLWVAL---------GECYEKLNR------L 448 (559)
T ss_pred HHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCch---HHHHHH---------HHHHHHhcc------H
Confidence 3344555566666666666666666666666666666666666663 222222 234544443 3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhh
Q 048108 82 SVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRK 126 (193)
Q Consensus 82 ~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~ 126 (193)
+|-.+-|++..+.- |.+ ..+.-.|.++|+-|+|-++-.
T Consensus 449 ~eAiKCykrai~~~--dte-----~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 449 EEAIKCYKRAILLG--DTE-----GSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HHHHHHHHHHHhcc--ccc-----hHHHHHHHHHHHHHHhHHHHH
Confidence 55566676655422 222 255667777888887755544
No 177
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=74.23 E-value=4.2 Score=36.07 Aligned_cols=39 Identities=15% Similarity=0.009 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
+++++-.+-.|..++..++|+.|+..++++....|+.+.
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence 445666777888899999999999999999999998864
No 178
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=73.54 E-value=13 Score=28.37 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
+++.+..+..+|..++..|+++.|+..+.++..++|....+
T Consensus 61 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 101 (234)
T TIGR02521 61 DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDV 101 (234)
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Confidence 44556677788999999999999999999999999987543
No 179
>PF15469 Sec5: Exocyst complex component Sec5
Probab=73.54 E-value=12 Score=29.39 Aligned_cols=77 Identities=17% Similarity=0.172 Sum_probs=49.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCc----cHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHHHHHHHHHhcC
Q 048108 21 EEYFKLQNIDMAIKTLKAAKEFNPDLP----NIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMLH 96 (193)
Q Consensus 21 ~~~~~~~d~~~A~~~~~~a~~l~p~~~----~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~H 96 (193)
..++..|||+.|+.+|.+|+.+.-... -+..+...++..+..- +...|+.|.- . ..+.++..+.-+.|. .++
T Consensus 94 ~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~-r~~l~~~L~~-~-~~s~~~~~~~i~~Ll-~L~ 169 (182)
T PF15469_consen 94 RECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEF-REKLWEKLLS-P-PSSQEEFLKLIRKLL-ELN 169 (182)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHhC-C-CCCHHHHHHHHHHHH-hCC
Confidence 457889999999999999999887652 2444444444433322 2455555554 3 367777777776554 456
Q ss_pred CCCCC
Q 048108 97 PDKNS 101 (193)
Q Consensus 97 PDk~~ 101 (193)
|+-+|
T Consensus 170 ~~~dP 174 (182)
T PF15469_consen 170 VEEDP 174 (182)
T ss_pred CCCCH
Confidence 65543
No 180
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=73.31 E-value=10 Score=28.43 Aligned_cols=41 Identities=10% Similarity=0.145 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 048108 15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRV 58 (193)
Q Consensus 15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~ 58 (193)
.-+.++|.++..|++++|...+-+|...+|.+. ++|..++.
T Consensus 65 ~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~---~LL~i~q~ 105 (121)
T PF02064_consen 65 QQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPA---ELLQIYQK 105 (121)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHH---HHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHH---HHHHHHHh
Confidence 346789999999999999999999999999994 56665554
No 181
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.67 E-value=22 Score=33.72 Aligned_cols=78 Identities=13% Similarity=0.100 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHH
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEF--------NPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISV 83 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l--------~p~~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~ 83 (193)
.-+.+.+.|-.++..|+|..|++.+++|.++ +.+.+++..-++.+.+.++-- ++++|- .++
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV-----lQ~~Gq------t~e 242 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV-----LQLQGQ------TAE 242 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH-----HHHhcc------hHH
Confidence 5578899999999999999999999999332 333466888888888766532 444554 245
Q ss_pred HHHHHHHHHHhcCCCCC
Q 048108 84 IKKQFKKMALMLHPDKN 100 (193)
Q Consensus 84 Ik~aYr~l~~~~HPDk~ 100 (193)
-+.-|..+....|+|-.
T Consensus 243 a~~iy~~~i~~~~~D~~ 259 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPADEP 259 (652)
T ss_pred HHHHHHHHHHhcCCCch
Confidence 56678888888899873
No 182
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=72.54 E-value=3.3 Score=36.92 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=18.6
Q ss_pred CCccccccCccCCCcceEecccC
Q 048108 171 KYRAKAIFCQCQGRRKIVILRNC 193 (193)
Q Consensus 171 ~~~~~~~~C~~C~~~~~v~~~~c 193 (193)
......+.|+.|+|+|.+|.++|
T Consensus 178 g~~~~~~~C~~C~G~G~~i~~pC 200 (371)
T COG0484 178 GFFSFQQTCPTCNGTGKIIKDPC 200 (371)
T ss_pred eEEEEEEECCCCccceeECCCCC
Confidence 33556688999999999999888
No 183
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=72.07 E-value=17 Score=27.17 Aligned_cols=36 Identities=28% Similarity=0.215 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
-.....+.+|..++..|++++|+..+..+....|++
T Consensus 46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~ 81 (145)
T PF09976_consen 46 YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDP 81 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH
Confidence 346788999999999999999999999999988665
No 184
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=71.67 E-value=3.6 Score=27.17 Aligned_cols=19 Identities=21% Similarity=0.104 Sum_probs=13.8
Q ss_pred ccccccCccCCCcceEecc
Q 048108 173 RAKAIFCQCQGRRKIVILR 191 (193)
Q Consensus 173 ~~~~~~C~~C~~~~~v~~~ 191 (193)
......|+.|+|+|.|+..
T Consensus 12 ~~~~~~C~~C~G~G~~~~~ 30 (66)
T PF00684_consen 12 GKKPKTCPQCNGSGQVTRR 30 (66)
T ss_dssp TTT-EE-TTSSSSSEEEEE
T ss_pred CCCCcCCcCCCCeeEEEEE
Confidence 3566899999999999753
No 185
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=71.33 E-value=6.2 Score=26.54 Aligned_cols=28 Identities=29% Similarity=0.228 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAA 39 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a 39 (193)
......-+|.+++..|++++|+..+.+|
T Consensus 57 ~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 57 NPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 3444555699999999999999999876
No 186
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=70.92 E-value=4 Score=36.43 Aligned_cols=79 Identities=22% Similarity=0.359 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc--cHHHHHHHHH---------------------------------
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP--NIDDYFTACR--------------------------------- 57 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~--~i~~~l~~~~--------------------------------- 57 (193)
+-.+.+++..+|+.|.|++|+..|.++..++|..+ .+.+.++-+.
T Consensus 97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE 176 (536)
T ss_pred hHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33478899999999999999999999999999422 1111111110
Q ss_pred -HHhhcccccchhhhhcCCCCCCCHHHHHHHHHHHHHh
Q 048108 58 -VHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALM 94 (193)
Q Consensus 58 -~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~ 94 (193)
...-.+.+.|+-.||.| .|. ..|+|+.|..+.-.
T Consensus 177 ~Lg~~~EAKkD~E~vL~L-EP~--~~ELkK~~a~i~Sl 211 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLAL-EPK--NIELKKSLARINSL 211 (536)
T ss_pred HHhhHHHHHHhHHHHHhh-Ccc--cHHHHHHHHHhcch
Confidence 00112345899999999 776 67899998776543
No 187
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=70.06 E-value=11 Score=32.01 Aligned_cols=43 Identities=23% Similarity=0.220 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID 50 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~ 50 (193)
.++.+++.+..++..+.+.|++++|+..|.+|..+.|..+.+-
T Consensus 129 l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~ 171 (257)
T COG5010 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIA 171 (257)
T ss_pred cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhh
Confidence 4566778888888889999999999999999999999886543
No 188
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=69.99 E-value=10 Score=26.01 Aligned_cols=37 Identities=19% Similarity=-0.051 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD 45 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~ 45 (193)
+-+.|..++..|...=..|+|++|+..|..|..++-.
T Consensus 2 ~l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 2 DLERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred CHHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999999999999999876543
No 189
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=69.61 E-value=8 Score=34.30 Aligned_cols=55 Identities=22% Similarity=0.254 Sum_probs=48.1
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhh
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQL 61 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~ 61 (193)
+.+++++..+..+++.++...+++.|++++..++...|+...|.+.+........
T Consensus 303 ~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~ 357 (372)
T KOG0546|consen 303 RDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKK 357 (372)
T ss_pred ccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHH
Confidence 3678889999999999999999999999999999999999988888777665443
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=69.33 E-value=25 Score=26.06 Aligned_cols=33 Identities=27% Similarity=0.192 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD 45 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~ 45 (193)
...++..|..+...|++++|+..++++..-+|.
T Consensus 38 ~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 38 RRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 345555555566666666666666666655555
No 191
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=68.71 E-value=4.9 Score=29.75 Aligned_cols=45 Identities=16% Similarity=0.202 Sum_probs=26.1
Q ss_pred cCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCCcceE
Q 048108 141 SCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRRKIV 188 (193)
Q Consensus 141 ~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~~~~v 188 (193)
.|+.|.+.+...... ..+......|+.|...-.+.|+.|.|+|.+
T Consensus 54 ~C~~C~G~G~v~~~~---~g~~q~~~~C~~C~G~Gk~~C~~C~G~G~~ 98 (111)
T PLN03165 54 VCRFCVGSGNVTVEL---GGGEKEVSKCINCDGAGSLTCTTCQGSGIQ 98 (111)
T ss_pred CCCCCcCcCeEEEEe---CCcEEEEEECCCCCCcceeeCCCCCCCEEE
Confidence 678887776421000 001223456777776666778888888765
No 192
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=68.40 E-value=30 Score=32.29 Aligned_cols=40 Identities=25% Similarity=0.275 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
|++-|+..+..+..+|+.|||..|++.|.+|...+|+++.
T Consensus 354 ~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 354 NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 4566788888899999999999999999999999999863
No 193
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=68.34 E-value=41 Score=34.18 Aligned_cols=34 Identities=9% Similarity=-0.067 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
..+.+|..++..|++++|+..++++..++|....
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~ 638 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD 638 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 4456888899999999999999999999998653
No 194
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=68.16 E-value=16 Score=25.08 Aligned_cols=31 Identities=32% Similarity=0.078 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKE 41 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~ 41 (193)
+.|..++.+|..+=+.|++.+|+..|.++..
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4688999999999999999998888877654
No 195
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=67.68 E-value=54 Score=27.46 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCc
Q 048108 13 AEKARDAAEEYFKL-QNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 13 a~~~~~~A~~~~~~-~d~~~A~~~~~~a~~l~p~~~ 47 (193)
|..+.++|+.+... ||++.|+..|++|..++....
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~ 149 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG 149 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 45666667777777 788888888888888766543
No 196
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=67.63 E-value=6.5 Score=39.47 Aligned_cols=44 Identities=16% Similarity=0.115 Sum_probs=30.3
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID 50 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~ 50 (193)
+.+++.+.....+|..+...|++++|+..+.+|.+++|+...+.
T Consensus 637 ~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~ 680 (987)
T PRK09782 637 ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALI 680 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 34556666777777777777777777777777777777765443
No 197
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=67.23 E-value=20 Score=33.34 Aligned_cols=34 Identities=12% Similarity=0.019 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD 45 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~ 45 (193)
.+......|..++..|++++|...+++|..++|+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps 452 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS 452 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence 3445555677777888999999999999999985
No 198
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=66.60 E-value=3.4 Score=33.30 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=21.4
Q ss_pred cccCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCCcceEe
Q 048108 139 LMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRRKIVI 189 (193)
Q Consensus 139 ~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~~~~v~ 189 (193)
...||.|.+.+. .. .....|+.|+|.|.|-
T Consensus 99 ~~~C~~C~G~G~------~i---------------~~~~~C~~C~G~G~v~ 128 (186)
T TIGR02642 99 SCKCPRCRGTGL------IQ---------------RRQRECDTCAGTGRFR 128 (186)
T ss_pred CCcCCCCCCeeE------Ee---------------cCCCCCCCCCCccEEe
Confidence 578888888876 00 1126799999999874
No 199
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.54 E-value=2.7 Score=38.87 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=36.1
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
.+.|++.+.-...||..+|-.++|+.|+.+++++++|+|+.
T Consensus 387 ~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~ 427 (606)
T KOG0547|consen 387 EDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN 427 (606)
T ss_pred HhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh
Confidence 35567778888899999999999999999999999999985
No 200
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=66.54 E-value=9 Score=36.47 Aligned_cols=41 Identities=10% Similarity=-0.106 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
.+++.+..+..+|..++..|+++.|+..+.++..++|....
T Consensus 105 ~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~ 145 (656)
T PRK15174 105 VNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQ 145 (656)
T ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 34555566677778888888888888888888888887644
No 201
>PRK14294 chaperone protein DnaJ; Provisional
Probab=66.50 E-value=2.4 Score=37.46 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=12.3
Q ss_pred cccCccCCCcceEecccC
Q 048108 176 AIFCQCQGRRKIVILRNC 193 (193)
Q Consensus 176 ~~~C~~C~~~~~v~~~~c 193 (193)
...|+.|+|+|+++..+|
T Consensus 183 ~~~C~~C~G~G~~~~~~C 200 (366)
T PRK14294 183 RTTCPRCRGMGKVIVSPC 200 (366)
T ss_pred EeeCCCCCCcCeecCcCC
Confidence 456777777777776666
No 202
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=66.19 E-value=18 Score=24.78 Aligned_cols=33 Identities=15% Similarity=-0.068 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFN 43 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~ 43 (193)
..|..+...|...=+.|+|++|+..|..|..+.
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l 36 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLL 36 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 458889999999999999999999999887643
No 203
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=65.92 E-value=17 Score=25.88 Aligned_cols=32 Identities=13% Similarity=0.019 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
.+|...|..|+..+..|+|..|..++..|...
T Consensus 43 ~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~ 74 (103)
T PF14346_consen 43 KEAREKLQRAKAALDDGDYERARRLAEQAQAD 74 (103)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999876
No 204
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=65.78 E-value=19 Score=24.04 Aligned_cols=32 Identities=19% Similarity=0.042 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKE 41 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~ 41 (193)
-++|..++..|...=..|++++|+..|..+..
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35788899999999999999999999888765
No 205
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=65.60 E-value=19 Score=24.44 Aligned_cols=33 Identities=12% Similarity=-0.089 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
-+.|..++..|...=..|++++|+..|..+...
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 467899999999999999999999999887663
No 206
>PRK14286 chaperone protein DnaJ; Provisional
Probab=65.45 E-value=2.2 Score=37.83 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=11.6
Q ss_pred ccCccCCCcceEecccC
Q 048108 177 IFCQCQGRRKIVILRNC 193 (193)
Q Consensus 177 ~~C~~C~~~~~v~~~~c 193 (193)
..|+.|+|+|.++.++|
T Consensus 190 ~~C~~C~G~G~~~~~~C 206 (372)
T PRK14286 190 TTCPTCRGKGTVISNPC 206 (372)
T ss_pred EeCCCCCceeeEecccC
Confidence 46777777777776666
No 207
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=65.38 E-value=8 Score=34.32 Aligned_cols=35 Identities=20% Similarity=0.056 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCcc
Q 048108 14 EKARDAAEEYFKLQNIDMAIKTLK--AAKEFNPDLPN 48 (193)
Q Consensus 14 ~~~~~~A~~~~~~~d~~~A~~~~~--~a~~l~p~~~~ 48 (193)
.-....|..++..|+|++|+.+++ ++....|+.+.
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH
Confidence 555667777888888888888888 46667777653
No 208
>PRK10767 chaperone protein DnaJ; Provisional
Probab=65.08 E-value=2.9 Score=37.02 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=11.6
Q ss_pred ccCccCCCcceEecccC
Q 048108 177 IFCQCQGRRKIVILRNC 193 (193)
Q Consensus 177 ~~C~~C~~~~~v~~~~c 193 (193)
..|+.|+|+|.++.++|
T Consensus 182 ~~C~~C~G~G~~~~~~C 198 (371)
T PRK10767 182 QTCPTCHGRGKIIKDPC 198 (371)
T ss_pred EeCCCCCCceeECCCCC
Confidence 45777777777766666
No 209
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=64.91 E-value=29 Score=33.63 Aligned_cols=120 Identities=18% Similarity=0.122 Sum_probs=66.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHH----------HHHHHhhc-----ccccchhhhhcCCCCCCC
Q 048108 16 ARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFT----------ACRVHQLS-----ETKSTLYKILAITDPQVD 80 (193)
Q Consensus 16 ~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~----------~~~~~~~~-----~~~~d~Y~vLgv~~~~a~ 80 (193)
||=-|..+...||..+|+..+..|-..+|+.++|-=... .++.+++. ...+=||+--.+ ..--+
T Consensus 587 wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~-er~ld 665 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANL-ERYLD 665 (913)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHH-HHHhh
Confidence 444566778889999999999999999999765421111 11111111 111333333222 22111
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCC-CchhhhhhhhhhhcccccccCCCCCCCC
Q 048108 81 ISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTD-PGKRKAFDNRIRLNKVKLMSCSCCRPQG 149 (193)
Q Consensus 81 ~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd-~~~R~~YD~~~~~~~~f~~~c~~c~~~~ 149 (193)
..+=-..+-.-+++..||-. ..|..+...|+-..+ ...|..|+.+.. .||.|-..+
T Consensus 666 ~~eeA~rllEe~lk~fp~f~------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k-------~cP~~ipLW 722 (913)
T KOG0495|consen 666 NVEEALRLLEEALKSFPDFH------KLWLMLGQIEEQMENIEMAREAYLQGTK-------KCPNSIPLW 722 (913)
T ss_pred hHHHHHHHHHHHHHhCCchH------HHHHHHhHHHHHHHHHHHHHHHHHhccc-------cCCCCchHH
Confidence 12222233456777777755 445555555555444 456788888775 577776544
No 210
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=64.88 E-value=4.5 Score=21.25 Aligned_cols=11 Identities=36% Similarity=0.637 Sum_probs=7.4
Q ss_pred cccccCccCCC
Q 048108 174 AKAIFCQCQGR 184 (193)
Q Consensus 174 ~~~~~C~~C~~ 184 (193)
..+.+|+.||.
T Consensus 11 ~~~~fC~~CG~ 21 (23)
T PF13240_consen 11 DDAKFCPNCGT 21 (23)
T ss_pred CcCcchhhhCC
Confidence 34577888875
No 211
>PRK14284 chaperone protein DnaJ; Provisional
Probab=64.82 E-value=2.6 Score=37.65 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=11.1
Q ss_pred ccCccCCCcceEecccC
Q 048108 177 IFCQCQGRRKIVILRNC 193 (193)
Q Consensus 177 ~~C~~C~~~~~v~~~~c 193 (193)
..|+.|+|+|.++.++|
T Consensus 198 ~~C~~C~G~G~~~~~~C 214 (391)
T PRK14284 198 STCPECGGEGRVITDPC 214 (391)
T ss_pred EECCCCCCCCcccCCcC
Confidence 46666666666666665
No 212
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=64.76 E-value=72 Score=27.03 Aligned_cols=75 Identities=20% Similarity=0.168 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHHHH
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQF 88 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~aY 88 (193)
|..-|.+-+.+|.=+++.|.+..|+.-++...+-+|+...+.+-|.... .-|.-||| .+..+..
T Consensus 163 ~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~---------eaY~~lgl-------~~~a~~~ 226 (254)
T COG4105 163 NDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLE---------EAYYALGL-------TDEAKKT 226 (254)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHH---------HHHHHhCC-------hHHHHHH
Confidence 3445788899999999999999999999999999999988887777765 33667999 4444555
Q ss_pred HHHHHhcCCCC
Q 048108 89 KKMALMLHPDK 99 (193)
Q Consensus 89 r~l~~~~HPDk 99 (193)
.+.....-||.
T Consensus 227 ~~vl~~N~p~s 237 (254)
T COG4105 227 AKVLGANYPDS 237 (254)
T ss_pred HHHHHhcCCCC
Confidence 55555566665
No 213
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=64.56 E-value=88 Score=26.52 Aligned_cols=38 Identities=21% Similarity=0.165 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
-+..|-+.|...|+.|+|++|.+.+++....+|..+-.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~ 70 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS 70 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc
Confidence 47889999999999999999999999999999986543
No 214
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=63.97 E-value=8.2 Score=34.32 Aligned_cols=43 Identities=23% Similarity=0.098 Sum_probs=26.2
Q ss_pred ccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 4 MLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 4 ~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
++.-.|.+.++.+-++|.-....|++++|+.+++.|....|..
T Consensus 420 laL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 420 LALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 3344455566666666666666666666666666666666654
No 215
>TIGR01385 TFSII transcription elongation factor S-II. This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.
Probab=63.91 E-value=42 Score=29.08 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhCCCCc----cHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC
Q 048108 29 IDMAIKTLKAAKEFNPDLP----NIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS 101 (193)
Q Consensus 29 ~~~A~~~~~~a~~l~p~~~----~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~ 101 (193)
.+.++.++-.|+....+.. ....+...++ .-.|..+|- +..+-|..||.+...+--.+|+
T Consensus 139 Rdk~r~~L~~aL~~~~~~~~~~~~~~~lA~~iE--------~~~f~~~~~-----~~~~Yk~k~Rsl~~NLKd~kNp 202 (299)
T TIGR01385 139 RDKCRELLYDALAKDSDHPPQSIDPEAKAIQIE--------ELKFNNLGT-----TEAAYKARYRSIYSNLRDKNNP 202 (299)
T ss_pred HHHHHHHHHHHHhhcCCCCccccCHHHHHHHHH--------HHHHHHcCC-----CcHHHHHHHHHHHHHccCCCCH
Confidence 4566677777776543211 2223333333 234666665 3456899999998887655554
No 216
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.81 E-value=9.1 Score=32.54 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108 14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD 45 (193)
Q Consensus 14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~ 45 (193)
.++.+.|..++.+|||.+|..-+..=...+|+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~ 173 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPN 173 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 44777777777777777777777777777776
No 217
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=62.91 E-value=24 Score=24.13 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKE 41 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~ 41 (193)
-..|..++..|...=+.|++++|+.+|..+..
T Consensus 3 ~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45788899999999999999999999888765
No 218
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=62.85 E-value=30 Score=28.67 Aligned_cols=38 Identities=32% Similarity=0.391 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
.+....-..++|+.++..||++.|+++++.+...+...
T Consensus 174 ~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e 211 (247)
T PF11817_consen 174 NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE 211 (247)
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC
Confidence 34556667899999999999999999999998777654
No 219
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.74 E-value=12 Score=28.24 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=30.9
Q ss_pred chhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 048108 67 TLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS 102 (193)
Q Consensus 67 d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~ 102 (193)
.--+||+| +..-+.++|.+.|..|-....+.|+++
T Consensus 60 Ea~qILnV-~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 60 EAQQILNV-KEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred HHhhHhCC-CCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 34589999 999999999999999999998888865
No 220
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=62.59 E-value=4.7 Score=32.51 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=15.6
Q ss_pred cccCccCCCcceEec--ccC
Q 048108 176 AIFCQCQGRRKIVIL--RNC 193 (193)
Q Consensus 176 ~~~C~~C~~~~~v~~--~~c 193 (193)
...|+.|+|+|.+|. ++|
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C 118 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQREC 118 (186)
T ss_pred CCcCCCCCCeeEEecCCCCC
Confidence 688999999999997 567
No 221
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.48 E-value=16 Score=31.29 Aligned_cols=33 Identities=21% Similarity=0.143 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
.++..+|.++....+.++|..++.++.+++|+.
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 344555555555555555555555555555554
No 222
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=62.24 E-value=22 Score=27.41 Aligned_cols=36 Identities=25% Similarity=0.182 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
+..+...|...|+.|+|.+|++.++....-+|..+-
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y 45 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY 45 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc
Confidence 567889999999999999999999999999998763
No 223
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=62.02 E-value=87 Score=31.52 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=36.2
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
++.....|+-+..+|.++.+.|||++|..+|..+...+|+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~ 340 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN 340 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC
Confidence 44455678889999999999999999999999999999975
No 224
>PRK14282 chaperone protein DnaJ; Provisional
Probab=61.98 E-value=4.6 Score=35.78 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=9.8
Q ss_pred ccCccCCCcceEecccC
Q 048108 177 IFCQCQGRRKIVILRNC 193 (193)
Q Consensus 177 ~~C~~C~~~~~v~~~~c 193 (193)
..|+.|+|+|.++..+|
T Consensus 196 ~~C~~C~G~G~~~~~~C 212 (369)
T PRK14282 196 RTCERCGGTGKIPGEYC 212 (369)
T ss_pred EECCCCCCcceeCCCCC
Confidence 45666666666555555
No 225
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=61.74 E-value=24 Score=23.66 Aligned_cols=31 Identities=23% Similarity=0.062 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKE 41 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~ 41 (193)
+.|..++..|...=..|++++|+..|..|..
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5788999999999999999999998888765
No 226
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=61.64 E-value=18 Score=35.76 Aligned_cols=45 Identities=18% Similarity=0.084 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACR 57 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~ 57 (193)
+.-|+.+|++++..|.++.|+.+|.++..+.|..-+++--|..+.
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~ 493 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLY 493 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHH
Confidence 566777788888888888888888888888887755554444443
No 227
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=60.95 E-value=1.6e+02 Score=28.63 Aligned_cols=39 Identities=5% Similarity=-0.128 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID 50 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~ 50 (193)
.....+..|..+...|++++|+..++++....|....+.
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~ 396 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLR 396 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 345567788899999999999999999999999986443
No 228
>PRK14301 chaperone protein DnaJ; Provisional
Probab=60.45 E-value=3.3 Score=36.82 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=12.6
Q ss_pred cccCccCCCcceEecccC
Q 048108 176 AIFCQCQGRRKIVILRNC 193 (193)
Q Consensus 176 ~~~C~~C~~~~~v~~~~c 193 (193)
...|+.|+|+|.++..+|
T Consensus 183 ~~~C~~C~G~G~~~~~~C 200 (373)
T PRK14301 183 AVPCPVCRGEGRVITHPC 200 (373)
T ss_pred EEeCCCCCceeeecCCCC
Confidence 466777777777776666
No 229
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=60.20 E-value=56 Score=27.84 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
-|+.+.+-+.+++....|..|+..|.+|..++|+..
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~ 44 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVA 44 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcc
Confidence 567777888888888888888888888888888763
No 230
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=60.05 E-value=22 Score=24.78 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
-+..++.+|..+...|++++|+..+..|.++-....+
T Consensus 40 ~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 40 LAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 4677999999999999999999999999998877654
No 231
>PRK15331 chaperone protein SicA; Provisional
Probab=59.80 E-value=40 Score=26.69 Aligned_cols=45 Identities=11% Similarity=0.096 Sum_probs=39.5
Q ss_pred ccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 4 MLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 4 ~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
+.+....++=+.....|-..+..|++++|.++++-...++|...+
T Consensus 28 ~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~ 72 (165)
T PRK15331 28 DVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD 72 (165)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH
Confidence 446777888899999999999999999999999999999998753
No 232
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.39 E-value=79 Score=27.29 Aligned_cols=84 Identities=13% Similarity=0.058 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHHHHHHHHH
Q 048108 14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMAL 93 (193)
Q Consensus 14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~ 93 (193)
.-+...|.+++..|+|++|...++.|..-+++.+..=.=+.++- ..+|. +. ++-..|-.-.+
T Consensus 208 ~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a------------~~~Gk-d~-----~~~~r~l~QLk 269 (299)
T KOG3081|consen 208 LLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA------------LHLGK-DA-----EVTERNLSQLK 269 (299)
T ss_pred HHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH------------HHhCC-Ch-----HHHHHHHHHHH
Confidence 34667899999999999999999999999998863211111111 12344 32 33444555567
Q ss_pred hcCCCCCC---CchHHHHHHHHHHH
Q 048108 94 MLHPDKNS---SVAADGAFKLIRSA 115 (193)
Q Consensus 94 ~~HPDk~~---~~~a~~~f~~i~~A 115 (193)
..||.+.- ..+.+..|-++..-
T Consensus 270 ~~~p~h~~vk~~~ekeaeFDrl~~q 294 (299)
T KOG3081|consen 270 LSHPEHPFVKHLNEKEAEFDRLVLQ 294 (299)
T ss_pred hcCCcchHHHHHHHHHHHHHHHHHH
Confidence 77887642 12344556655443
No 233
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=59.37 E-value=29 Score=23.08 Aligned_cols=31 Identities=19% Similarity=0.062 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKE 41 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~ 41 (193)
+.|..++..|...=..|++++|+..|..|..
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678888899888899999999998888765
No 234
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=58.07 E-value=19 Score=34.21 Aligned_cols=50 Identities=16% Similarity=0.078 Sum_probs=39.8
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTAC 56 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~ 56 (193)
-.|...-.+|..++..|++.+.++.|..++++|..++|...-|-.-+-.+
T Consensus 483 ~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~ 532 (638)
T KOG1126|consen 483 GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRI 532 (638)
T ss_pred cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHH
Confidence 34566778899999999999999999999999999999875444333333
No 235
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=57.84 E-value=19 Score=33.64 Aligned_cols=36 Identities=22% Similarity=0.107 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
+.++....+|..++..|+++.|...+.++.++.|..
T Consensus 54 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 89 (899)
T TIGR02917 54 NDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPK 89 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh
Confidence 344455555666666666666666666666665554
No 236
>PRK14281 chaperone protein DnaJ; Provisional
Probab=57.67 E-value=5.7 Score=35.60 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=12.7
Q ss_pred ccCccCCCcceEecccC
Q 048108 177 IFCQCQGRRKIVILRNC 193 (193)
Q Consensus 177 ~~C~~C~~~~~v~~~~c 193 (193)
..|+.|+|+|.++.++|
T Consensus 206 ~~C~~C~G~G~~~~~~C 222 (397)
T PRK14281 206 TACPTCGGEGRVVKDRC 222 (397)
T ss_pred EecCCCcceeeeeCCCC
Confidence 46777777777777776
No 237
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=57.61 E-value=19 Score=29.78 Aligned_cols=33 Identities=30% Similarity=0.416 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 16 ARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 16 ~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
+...|..++..|+++.|+..++++...+|.++.
T Consensus 217 ~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 217 WDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp CHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHHHHHhccccccccccccccccccccccccc
Confidence 345677788888888888888888888887753
No 238
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=57.57 E-value=13 Score=37.81 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
++.+..+..+|..++..|++++|+..++++.+++|....+
T Consensus 382 P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a 421 (1157)
T PRK11447 382 NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNA 421 (1157)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 3445556678888999999999999999999999987543
No 239
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=57.44 E-value=56 Score=27.22 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=30.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhh
Q 048108 25 KLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQL 61 (193)
Q Consensus 25 ~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~ 61 (193)
..+++..|+.++++|..++|.- ++...+..++..+.
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~lr 225 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKC-GVKKDIERLERRLK 225 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHh
Confidence 4568899999999999999998 58888888876654
No 240
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=57.12 E-value=28 Score=32.58 Aligned_cols=43 Identities=23% Similarity=0.270 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHH
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFT 54 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~ 54 (193)
.+...+..|..++..|++++|+..+.++.+.+|......-.+.
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 63 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLG 63 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5677899999999999999999999999999999765444443
No 241
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=56.67 E-value=15 Score=25.38 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=22.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Q 048108 18 DAAEEYFKLQNIDMAIKTLKAAKEFN 43 (193)
Q Consensus 18 ~~A~~~~~~~d~~~A~~~~~~a~~l~ 43 (193)
..++.....||+++|.+.-++|+.+.
T Consensus 42 ~kv~~~~~~Gd~~~A~~aS~~Ak~~~ 67 (82)
T PF04505_consen 42 SKVRSRYAAGDYEGARRASRKAKKWS 67 (82)
T ss_pred hhhHHHHHCCCHHHHHHHHHHhHHHH
Confidence 45678899999999999999998764
No 242
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=56.63 E-value=51 Score=22.72 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=31.4
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHH
Q 048108 70 KILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFK 110 (193)
Q Consensus 70 ~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~ 110 (193)
.+.|+ .|.+|.+||..+-.+.+++..--..++....+.|.
T Consensus 7 ~L~~f-ePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~ 46 (78)
T PF10041_consen 7 TLRNF-EPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFD 46 (78)
T ss_pred hhcCC-CCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHH
Confidence 45678 89999999999999999998766666555555554
No 243
>PRK14283 chaperone protein DnaJ; Provisional
Probab=56.54 E-value=5.9 Score=35.21 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=9.0
Q ss_pred ccCccCCCcceEecccC
Q 048108 177 IFCQCQGRRKIVILRNC 193 (193)
Q Consensus 177 ~~C~~C~~~~~v~~~~c 193 (193)
..|+.|+|+|.++.++|
T Consensus 190 ~~C~~C~G~G~~~~~~C 206 (378)
T PRK14283 190 TTCPDCQGEGKIVEKPC 206 (378)
T ss_pred EECCCCCccceecCCCC
Confidence 34555555555555544
No 244
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=56.35 E-value=25 Score=31.56 Aligned_cols=44 Identities=11% Similarity=0.026 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 048108 14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACR 57 (193)
Q Consensus 14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~ 57 (193)
.++.+++.+.+..|...+|.++++.+++|.|..-.+...+..+.
T Consensus 166 KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 166 KAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARIN 209 (536)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence 45667889999999999999999999999999776776666554
No 245
>PRK14278 chaperone protein DnaJ; Provisional
Probab=56.26 E-value=5.6 Score=35.39 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=12.7
Q ss_pred cccCccCCCcceEecccC
Q 048108 176 AIFCQCQGRRKIVILRNC 193 (193)
Q Consensus 176 ~~~C~~C~~~~~v~~~~c 193 (193)
...|+.|+|+|.++.++|
T Consensus 182 ~~~C~~C~G~G~~~~~~C 199 (378)
T PRK14278 182 SRPCPTCRGVGEVIPDPC 199 (378)
T ss_pred EEECCCCCccceeeCCCC
Confidence 346777777777777766
No 246
>PRK14296 chaperone protein DnaJ; Provisional
Probab=55.78 E-value=6.4 Score=34.98 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=11.4
Q ss_pred ccCccCCCcceEecccC
Q 048108 177 IFCQCQGRRKIVILRNC 193 (193)
Q Consensus 177 ~~C~~C~~~~~v~~~~c 193 (193)
..|+.|+|+|.++.++|
T Consensus 193 ~~C~~C~G~G~~~~~~C 209 (372)
T PRK14296 193 AKCNVCNGAGKIIKNKC 209 (372)
T ss_pred ecCCCcCCcceeecccc
Confidence 46777777777766665
No 247
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=55.38 E-value=31 Score=23.87 Aligned_cols=32 Identities=9% Similarity=-0.068 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKE 41 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~ 41 (193)
=+.|...++.|..+=..|+.+.|+..|.++++
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 36788899999999999999999999999876
No 248
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=55.24 E-value=8.1 Score=17.71 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHcC
Q 048108 108 AFKLIRSANNVLT 120 (193)
Q Consensus 108 ~f~~i~~Ay~vLs 120 (193)
.|..|..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677888888774
No 249
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=54.88 E-value=50 Score=28.35 Aligned_cols=39 Identities=18% Similarity=0.114 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID 50 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~ 50 (193)
....+...|+.++.-++++.+...+++...++|..+.+-
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~ 190 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAY 190 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHH
Confidence 345677889999999999999999999999999987543
No 250
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=54.57 E-value=33 Score=31.77 Aligned_cols=36 Identities=25% Similarity=0.150 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD 45 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~ 45 (193)
+.+..-|..+++++.+.++.++|++.+-+|.....+
T Consensus 429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 345566677777777777777777777777776665
No 251
>PRK14289 chaperone protein DnaJ; Provisional
Probab=54.49 E-value=4.8 Score=35.84 Aligned_cols=12 Identities=42% Similarity=0.941 Sum_probs=8.3
Q ss_pred cccCCCCCCCCC
Q 048108 139 LMSCSCCRPQGA 150 (193)
Q Consensus 139 ~~~c~~c~~~~~ 150 (193)
...|+.|.+.+.
T Consensus 154 ~~~C~~C~G~G~ 165 (386)
T PRK14289 154 YVPCSHCHGTGA 165 (386)
T ss_pred ecccCCCCCCCC
Confidence 467888877664
No 252
>PRK14298 chaperone protein DnaJ; Provisional
Probab=54.43 E-value=11 Score=33.44 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=10.5
Q ss_pred ccCccCCCcceEecccC
Q 048108 177 IFCQCQGRRKIVILRNC 193 (193)
Q Consensus 177 ~~C~~C~~~~~v~~~~c 193 (193)
..|+.|+|+|.++.++|
T Consensus 185 ~~C~~C~G~G~~~~~~C 201 (377)
T PRK14298 185 TTCSTCHGRGQVIESPC 201 (377)
T ss_pred EeCCCCCCCCcccCCCC
Confidence 45666666666666555
No 253
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=54.26 E-value=32 Score=26.68 Aligned_cols=50 Identities=14% Similarity=0.079 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc
Q 048108 14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE 63 (193)
Q Consensus 14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~ 63 (193)
+.+.=+|..+.+.++|+.++++.....+..|+...+..+-..++..+..+
T Consensus 72 e~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~itke 121 (149)
T KOG3364|consen 72 ECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIEDKITKE 121 (149)
T ss_pred hhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhc
Confidence 55566788899999999999999999999999988777777776555443
No 254
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=54.20 E-value=17 Score=35.12 Aligned_cols=40 Identities=20% Similarity=-0.032 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
.++....++.+|..+...|+++.|+..+.++..++|+...
T Consensus 389 ~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~ 428 (765)
T PRK10049 389 APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN 428 (765)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH
Confidence 3455678899999999999999999999999999998754
No 255
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=53.57 E-value=3.6 Score=37.72 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
+.-|.-.-++|.++++.+++.+|+.++.+|.+++|+.
T Consensus 35 pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~ 71 (476)
T KOG0376|consen 35 PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY 71 (476)
T ss_pred CcceeeechhhhhheeechhhhHHHHHHhhhhcCchh
Confidence 3334444455555556666666666666666666553
No 256
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=53.41 E-value=13 Score=21.54 Aligned_cols=32 Identities=13% Similarity=0.042 Sum_probs=18.9
Q ss_pred ccccCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCCc
Q 048108 138 KLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRR 185 (193)
Q Consensus 138 f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~~ 185 (193)
+...|+.|+..++ +.-.. .......|+.||..
T Consensus 4 Y~y~C~~Cg~~fe---------------~~~~~-~~~~~~~CP~Cg~~ 35 (41)
T smart00834 4 YEYRCEDCGHTFE---------------VLQKI-SDDPLATCPECGGD 35 (41)
T ss_pred EEEEcCCCCCEEE---------------EEEec-CCCCCCCCCCCCCc
Confidence 3457888888776 11111 11345678888874
No 257
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=52.85 E-value=6.9 Score=34.32 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=11.7
Q ss_pred ccCccCCCcceEecccC
Q 048108 177 IFCQCQGRRKIVILRNC 193 (193)
Q Consensus 177 ~~C~~C~~~~~v~~~~c 193 (193)
..|+.|.|+|.++..+|
T Consensus 187 ~~C~~C~G~G~~~~~~C 203 (354)
T TIGR02349 187 QTCPTCGGEGKIIKEPC 203 (354)
T ss_pred EecCCCCCcceecCCCC
Confidence 46777777777776666
No 258
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=52.69 E-value=11 Score=35.60 Aligned_cols=16 Identities=19% Similarity=0.067 Sum_probs=11.4
Q ss_pred ccccCccCCCcceEec
Q 048108 175 KAIFCQCQGRRKIVIL 190 (193)
Q Consensus 175 ~~~~C~~C~~~~~v~~ 190 (193)
....|+.|+|+|.|..
T Consensus 67 v~~~c~~c~G~gkv~~ 82 (715)
T COG1107 67 VYDTCPECGGTGKVLT 82 (715)
T ss_pred EEeecccCCCceeEEe
Confidence 3367888888887764
No 259
>PRK14574 hmsH outer membrane protein; Provisional
Probab=52.38 E-value=82 Score=31.15 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHH
Q 048108 15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYF 53 (193)
Q Consensus 15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l 53 (193)
..+..|..+...|+++.|+..++++.+.+|+.+.+-..+
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gL 142 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGM 142 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 344457788899999999999999999999986554433
No 260
>PRK14280 chaperone protein DnaJ; Provisional
Probab=52.32 E-value=6.6 Score=34.87 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=11.8
Q ss_pred cccCccCCCcceEecccC
Q 048108 176 AIFCQCQGRRKIVILRNC 193 (193)
Q Consensus 176 ~~~C~~C~~~~~v~~~~c 193 (193)
...|+.|+|+|.++..+|
T Consensus 186 ~~~C~~C~G~G~~~~~~C 203 (376)
T PRK14280 186 RQTCPHCNGTGQEIKEKC 203 (376)
T ss_pred EEEcCCCCCCCceecCCC
Confidence 346777777777666665
No 261
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=52.04 E-value=82 Score=27.81 Aligned_cols=37 Identities=11% Similarity=0.057 Sum_probs=28.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 048108 20 AEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTAC 56 (193)
Q Consensus 20 A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~ 56 (193)
|+.++..|+++.|...+.++...+|+.+.+-+++..+
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~ 196 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQA 196 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 6777888888888888888888888876655555444
No 262
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=51.90 E-value=9.8 Score=28.97 Aligned_cols=34 Identities=24% Similarity=0.478 Sum_probs=24.1
Q ss_pred ccccccCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCCcceEec
Q 048108 136 KVKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRRKIVIL 190 (193)
Q Consensus 136 ~~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~~~~v~~ 190 (193)
......||.|+.+-. .+..-|+||.|+.+..++.
T Consensus 25 kML~~hCp~Cg~PLF---------------------~KdG~v~CPvC~~~~~~v~ 58 (131)
T COG1645 25 KMLAKHCPKCGTPLF---------------------RKDGEVFCPVCGYREVVVE 58 (131)
T ss_pred HHHHhhCcccCCcce---------------------eeCCeEECCCCCceEEEee
Confidence 334568999998874 1334489999998777764
No 263
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.85 E-value=14 Score=35.59 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID 50 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~ 50 (193)
.+.-|..+.+++.-+-..||..+|+..+.+|..++|+..+..
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAh 459 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAH 459 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHH
Confidence 344455555555555556666666666666666666554333
No 264
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=51.85 E-value=43 Score=31.96 Aligned_cols=45 Identities=13% Similarity=0.133 Sum_probs=37.2
Q ss_pred cccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 3 RMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 3 ~~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
+.-.+.|+....-+--++..+.+.|+.+.|+.++.+|..++|..+
T Consensus 513 qkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 513 QKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred HhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 445677888888888888889999999999999999999999864
No 265
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=51.83 E-value=13 Score=34.11 Aligned_cols=37 Identities=14% Similarity=-0.139 Sum_probs=31.3
Q ss_pred ccCCHHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 6 KNLVKLAA---EKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 6 ~e~~~~ea---~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
++.|++.+ ..+.++|..+...|++++|+..+++|.++
T Consensus 102 LeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 102 LELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44455555 45999999999999999999999999998
No 266
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=51.69 E-value=41 Score=24.89 Aligned_cols=34 Identities=15% Similarity=-0.091 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
+.+.++|..+-..|+.++|+.+|++|....++.+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~ 35 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGA 35 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch
Confidence 4567899999999999999999999999876654
No 267
>KOG2463 consensus Predicted RNA-binding protein Nob1p involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones]
Probab=51.01 E-value=6.2 Score=34.63 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=15.4
Q ss_pred ceeeCCCCccc----cccCccCCCc
Q 048108 165 NTSCPRKYRAK----AIFCQCQGRR 185 (193)
Q Consensus 165 ~~~c~~~~~~~----~~~C~~C~~~ 185 (193)
-++|..|+... ..+|++||++
T Consensus 242 iLRCh~Cfsit~~m~k~FCp~CG~~ 266 (376)
T KOG2463|consen 242 ILRCHGCFSITSEMPKDFCPSCGHK 266 (376)
T ss_pred eeEeeeeeEecCccchhcccccCCC
Confidence 36777666444 4899999997
No 268
>PHA00626 hypothetical protein
Probab=50.73 E-value=14 Score=24.07 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=15.9
Q ss_pred cCCCCCCCCCCCCCCcccccccCcceeeCCCCc-cccccCccCC
Q 048108 141 SCSCCRPQGAGDNNSPRASTYKANNTSCPRKYR-AKAIFCQCQG 183 (193)
Q Consensus 141 ~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~-~~~~~C~~C~ 183 (193)
.||.|+...- .+|.-+.. +...-|+.||
T Consensus 2 ~CP~CGS~~I---------------vrcg~cr~~snrYkCkdCG 30 (59)
T PHA00626 2 SCPKCGSGNI---------------AKEKTMRGWSDDYVCCDCG 30 (59)
T ss_pred CCCCCCCcee---------------eeeceecccCcceEcCCCC
Confidence 5777777543 34444343 4556666665
No 269
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=50.62 E-value=42 Score=25.01 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
+.+.+.+..|...+..+|++.+...+.||..+
T Consensus 29 dg~i~~l~~a~~ai~~~d~~~~~~~i~ka~~I 60 (124)
T TIGR00208 29 NGCLKFIRLAAQAIENDDIERKNENLIKAQNI 60 (124)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57889999999999999999999999998874
No 270
>PRK14276 chaperone protein DnaJ; Provisional
Probab=50.59 E-value=7.2 Score=34.71 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=11.2
Q ss_pred ccCccCCCcceEecccC
Q 048108 177 IFCQCQGRRKIVILRNC 193 (193)
Q Consensus 177 ~~C~~C~~~~~v~~~~c 193 (193)
..|+.|+|+|.++..+|
T Consensus 190 ~~C~~C~G~G~~~~~~C 206 (380)
T PRK14276 190 VTCDVCHGTGKEIKEPC 206 (380)
T ss_pred EECCCCCCCCccccCCC
Confidence 46667777766666665
No 271
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=50.23 E-value=1.3e+02 Score=25.11 Aligned_cols=74 Identities=16% Similarity=0.140 Sum_probs=45.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcc----------HHHHHHHHHHHhhcccccchhhhh---cCCCCCCCHHHHHHHHH
Q 048108 23 YFKLQNIDMAIKTLKAAKEFNPDLPN----------IDDYFTACRVHQLSETKSTLYKIL---AITDPQVDISVIKKQFK 89 (193)
Q Consensus 23 ~~~~~d~~~A~~~~~~a~~l~p~~~~----------i~~~l~~~~~~~~~~~~~d~Y~vL---gv~~~~a~~~~Ik~aYr 89 (193)
.|..|||+.|+..+.-|.+..-..++ ++++++.+..........++|-.. +|.....-+++|+..+.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 35679999999999999997655432 455666666555555555555322 22123345666777666
Q ss_pred HHHHhcC
Q 048108 90 KMALMLH 96 (193)
Q Consensus 90 ~l~~~~H 96 (193)
+.+=..+
T Consensus 173 K~~G~~l 179 (230)
T PHA02537 173 KAAGYLL 179 (230)
T ss_pred HHHHHHH
Confidence 6655443
No 272
>PF13763 DUF4167: Domain of unknown function (DUF4167)
Probab=49.84 E-value=37 Score=23.61 Aligned_cols=29 Identities=21% Similarity=0.100 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKE 41 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~ 41 (193)
.+|++.+|...+.+||...|-.+++-|--
T Consensus 39 ~EKY~~LArDA~ssGDrV~aEny~QHAeH 67 (80)
T PF13763_consen 39 IEKYNQLARDAQSSGDRVLAENYLQHAEH 67 (80)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 68999999999999999999999988754
No 273
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=49.65 E-value=42 Score=22.80 Aligned_cols=32 Identities=16% Similarity=0.050 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
++|..++..|...=..|+|++|...|..+..+
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 56888888999999999999999999887664
No 274
>PRK05685 fliS flagellar protein FliS; Validated
Probab=49.57 E-value=43 Score=25.14 Aligned_cols=32 Identities=16% Similarity=-0.007 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
+.+.+.+..|..++..+|++.+...+.||..+
T Consensus 33 dgai~~l~~A~~ai~~~~~~~~~~~l~ka~~I 64 (132)
T PRK05685 33 EGALSFLAQAKLAIEQGDIEAKGEYLSKAINI 64 (132)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57889999999999999999999999998874
No 275
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=49.51 E-value=36 Score=28.87 Aligned_cols=43 Identities=21% Similarity=0.135 Sum_probs=33.0
Q ss_pred ccCCHHHHHHHHHHHHHH---------------HHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 6 KNLVKLAAEKARDAAEEY---------------FKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~---------------~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
..++.+.|..+++.|... .++|+++.|.+-+++..+++|.+..
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 344455555666666555 9999999999999999999998643
No 276
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=49.24 E-value=2e+02 Score=28.44 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=29.0
Q ss_pred cccccccCCCCCCCCC--CCCCCcccccccCcceeeCCCCccc-------cccCccCCC
Q 048108 135 NKVKLMSCSCCRPQGA--GDNNSPRASTYKANNTSCPRKYRAK-------AIFCQCQGR 184 (193)
Q Consensus 135 ~~~f~~~c~~c~~~~~--~~~~~~~~~~~~~~~~~c~~~~~~~-------~~~C~~C~~ 184 (193)
.+....+|+-|...+- ...|.|... +.+|.|+.|.... -..||=|+-
T Consensus 1127 i~~~~~~c~ec~~kfP~CiasG~pIt~---~~fWlC~~CkH~a~~~EIs~y~~CPLCHs 1182 (1189)
T KOG2041|consen 1127 IDPYDLQCSECQTKFPVCIASGRPITD---NIFWLCPRCKHRAHQHEISKYNCCPLCHS 1182 (1189)
T ss_pred CCccCCCChhhcCcCceeeccCCcccc---ceEEEccccccccccccccccccCccccC
Confidence 3445567777776663 244555443 3478898876433 378998874
No 277
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=48.79 E-value=85 Score=29.04 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
-.+.-+++.++..++..+|...+.++..++|..
T Consensus 341 ~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~ 373 (484)
T COG4783 341 YYLELAGDILLEANKAKEAIERLKKALALDPNS 373 (484)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Confidence 334445555666666666666666666666654
No 278
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.78 E-value=97 Score=25.28 Aligned_cols=55 Identities=7% Similarity=-0.128 Sum_probs=37.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHh
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQ 60 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~ 60 (193)
-|.|+...-.=-.++...++.||+.+|+..+.....-.-.+++|++.-...-.++
T Consensus 160 ~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprnirqRAq~mldlI 214 (221)
T COG4649 160 GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNIRQRAQIMLDLI 214 (221)
T ss_pred CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHHHHHHHHHHHHH
Confidence 3445544333334566688999999999999999886667777776655554333
No 279
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=48.68 E-value=10 Score=21.92 Aligned_cols=10 Identities=20% Similarity=0.368 Sum_probs=4.2
Q ss_pred cCCCCCCCCC
Q 048108 141 SCSCCRPQGA 150 (193)
Q Consensus 141 ~c~~c~~~~~ 150 (193)
+||.|+.+-+
T Consensus 2 fC~~CG~~l~ 11 (34)
T PF14803_consen 2 FCPQCGGPLE 11 (34)
T ss_dssp B-TTT--B-E
T ss_pred ccccccChhh
Confidence 5777877765
No 280
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=47.82 E-value=19 Score=22.20 Aligned_cols=13 Identities=15% Similarity=0.358 Sum_probs=9.5
Q ss_pred ccccCCCCCCCCC
Q 048108 138 KLMSCSCCRPQGA 150 (193)
Q Consensus 138 f~~~c~~c~~~~~ 150 (193)
+...|..|+..++
T Consensus 4 Yey~C~~Cg~~fe 16 (52)
T TIGR02605 4 YEYRCTACGHRFE 16 (52)
T ss_pred EEEEeCCCCCEeE
Confidence 4457888888776
No 281
>PRK14293 chaperone protein DnaJ; Provisional
Probab=47.26 E-value=9 Score=33.98 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=11.5
Q ss_pred ccCccCCCcceEecccC
Q 048108 177 IFCQCQGRRKIVILRNC 193 (193)
Q Consensus 177 ~~C~~C~~~~~v~~~~c 193 (193)
..|+.|.|+|+++.++|
T Consensus 187 ~~C~~C~G~G~~~~~~C 203 (374)
T PRK14293 187 SECPTCNGTGQVIEDPC 203 (374)
T ss_pred eeCCCCCcceeEeccCC
Confidence 45777777777766666
No 282
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=47.22 E-value=3e+02 Score=27.60 Aligned_cols=44 Identities=14% Similarity=0.109 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTA 55 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~ 55 (193)
+...++..|.-.+..||++.|.+.+..+.+.+|.....=..|..
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~ 181 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGE 181 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHH
Confidence 57889999999999999999999999999999987544344433
No 283
>PRK14290 chaperone protein DnaJ; Provisional
Probab=46.94 E-value=13 Score=32.94 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=12.2
Q ss_pred ccCccCCCcceEecccC
Q 048108 177 IFCQCQGRRKIVILRNC 193 (193)
Q Consensus 177 ~~C~~C~~~~~v~~~~c 193 (193)
..|+.|+|+|+++..+|
T Consensus 192 ~~C~~C~G~G~~~~~~C 208 (365)
T PRK14290 192 TTCRTCGGRGRIPEEKC 208 (365)
T ss_pred EeCCCCCCceeEccCCC
Confidence 46777777777777666
No 284
>PRK14277 chaperone protein DnaJ; Provisional
Probab=46.82 E-value=9 Score=34.16 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=11.8
Q ss_pred ccCccCCCcceEecccC
Q 048108 177 IFCQCQGRRKIVILRNC 193 (193)
Q Consensus 177 ~~C~~C~~~~~v~~~~c 193 (193)
..|+.|+|+|.++.++|
T Consensus 199 ~~C~~C~G~G~~~~~~C 215 (386)
T PRK14277 199 RTCDRCHGEGKIITDPC 215 (386)
T ss_pred EECCCCCcceeeccCCC
Confidence 46777777777776666
No 285
>PRK10941 hypothetical protein; Provisional
Probab=46.77 E-value=38 Score=28.79 Aligned_cols=30 Identities=17% Similarity=0.447 Sum_probs=22.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 18 DAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 18 ~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
++=..+++.++++.|++..+....+.|..+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp 215 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDP 215 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCH
Confidence 344557788888888888888888888764
No 286
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=46.31 E-value=56 Score=27.60 Aligned_cols=38 Identities=21% Similarity=-0.046 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID 50 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~ 50 (193)
.......|..++..|+++.|...++++..+.|....+.
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~ 151 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAV 151 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHH
Confidence 34445667788888888888888888888888875433
No 287
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=46.11 E-value=28 Score=31.29 Aligned_cols=39 Identities=21% Similarity=0.157 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
++..++-+...|.-+++.++++.|+..+.+|..+.|+.-
T Consensus 230 ~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f 268 (395)
T PF09295_consen 230 NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEF 268 (395)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhH
Confidence 344577777888888888888888888888888888753
No 288
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=46.06 E-value=1.2e+02 Score=29.39 Aligned_cols=43 Identities=7% Similarity=-0.117 Sum_probs=28.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
-+..++.+......|..+.+.+.+++|+..++++...+|+...
T Consensus 113 ~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~ 155 (694)
T PRK15179 113 HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR 155 (694)
T ss_pred HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH
Confidence 3445555666666777777777777777777777777776543
No 289
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=46.02 E-value=10 Score=24.86 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=11.1
Q ss_pred eeeCCCC-ccccccCccCCCcc
Q 048108 166 TSCPRKY-RAKAIFCQCQGRRK 186 (193)
Q Consensus 166 ~~c~~~~-~~~~~~C~~C~~~~ 186 (193)
++|.++. .+....|+.||=.|
T Consensus 37 ~RC~~CRk~~~~Y~CP~CGF~G 58 (59)
T PRK14890 37 YRCEKCRKQSNPYTCPKCGFEG 58 (59)
T ss_pred eechhHHhcCCceECCCCCCcC
Confidence 3444433 23446677777554
No 290
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=45.95 E-value=44 Score=24.54 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKE 41 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~ 41 (193)
+.+...+..|...+..||++.+...+.+|..
T Consensus 27 d~ai~~l~~a~~a~~~~~~~~~~~~l~ka~~ 57 (122)
T PF02561_consen 27 DGAIEFLKQAKEAIEQGDIEEKNEALQKAQD 57 (122)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999987
No 291
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=45.92 E-value=30 Score=17.94 Aligned_cols=21 Identities=29% Similarity=0.178 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCc
Q 048108 27 QNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 27 ~d~~~A~~~~~~a~~l~p~~~ 47 (193)
|+++.|+..++++....|...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~ 21 (33)
T smart00386 1 GDIERARKIYERALEKFPKSV 21 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCCh
Confidence 578899999999999999654
No 292
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=45.78 E-value=40 Score=29.76 Aligned_cols=38 Identities=18% Similarity=0.054 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
.+|+.+...|...-+.|.+-+|+.++++|.++.|+.+-
T Consensus 17 kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs 54 (366)
T KOG2997|consen 17 KKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPDIES 54 (366)
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHH
Confidence 56888888899999999999999999999999998764
No 293
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.76 E-value=55 Score=28.03 Aligned_cols=42 Identities=14% Similarity=-0.040 Sum_probs=36.3
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
.+.++.|.-++++|.+.+..-+.+.|+.+|+++..+.-..+.
T Consensus 104 ~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr 145 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDR 145 (308)
T ss_pred hCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccch
Confidence 356778899999999999999999999999999998776543
No 294
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=45.58 E-value=47 Score=25.79 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 048108 15 KARDAAEEYFKLQ-NIDMAIKTLKAAKEFNPDLPNIDDYFTACRV 58 (193)
Q Consensus 15 ~~~~~A~~~~~~~-d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~ 58 (193)
.-+.++|.++..| ++++|...+-+|...+|.+. ++|..++.
T Consensus 92 ~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~---~LL~iyq~ 133 (148)
T TIGR00985 92 QEVQLGEELMAQGTNVDEGAVHFYNALKVYPQPQ---QLLSIYQQ 133 (148)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHhCCCHH---HHHHHHHh
Confidence 3467899999999 99999999999999999994 45555443
No 295
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=45.25 E-value=11 Score=34.10 Aligned_cols=13 Identities=31% Similarity=0.266 Sum_probs=8.6
Q ss_pred HHHHHHHHhCCCC
Q 048108 34 KTLKAAKEFNPDL 46 (193)
Q Consensus 34 ~~~~~a~~l~p~~ 46 (193)
.|...|+.++|+.
T Consensus 48 AYrkla~k~HPDk 60 (421)
T PTZ00037 48 AYRKLAIKHHPDK 60 (421)
T ss_pred HHHHHHHHHCCCC
Confidence 3444667888876
No 296
>PRK14295 chaperone protein DnaJ; Provisional
Probab=44.67 E-value=8.1 Score=34.52 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=14.4
Q ss_pred ccccCccCCCcceEecccC
Q 048108 175 KAIFCQCQGRRKIVILRNC 193 (193)
Q Consensus 175 ~~~~C~~C~~~~~v~~~~c 193 (193)
....|+.|+|+|.++..+|
T Consensus 204 ~~~~C~~C~G~G~~~~~~C 222 (389)
T PRK14295 204 LSEPCPDCKGRGLIADDPC 222 (389)
T ss_pred EEEecCCCcceeEEeccCC
Confidence 3457888888888887777
No 297
>PRK11906 transcriptional regulator; Provisional
Probab=44.60 E-value=29 Score=31.91 Aligned_cols=42 Identities=7% Similarity=-0.032 Sum_probs=27.7
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
|.|+.+|...--.|....-.++++.|...+.+|..++|+...
T Consensus 332 eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~ 373 (458)
T PRK11906 332 DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIAS 373 (458)
T ss_pred hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHH
Confidence 455556666666666666666677777777777777777643
No 298
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=44.42 E-value=50 Score=29.41 Aligned_cols=35 Identities=23% Similarity=0.186 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
+|.-+-++|.+.+-.|+|..|+.+..+|..++|+.
T Consensus 118 navLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h 152 (390)
T KOG0551|consen 118 NAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH 152 (390)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 46667788888888888888888888888888876
No 299
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=44.40 E-value=1.9e+02 Score=24.29 Aligned_cols=72 Identities=13% Similarity=0.087 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHHHHHHHH
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMA 92 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~ 92 (193)
+....-+|..++..|++++|+..+.++...+|..+...+.+-.+-. -|.-+ -..++-++.|.++.
T Consensus 180 ~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~---------~~~~~------g~~~~A~~~~~~vi 244 (263)
T PRK10803 180 PNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV---------IMQDK------GDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH---------HHHHc------CCHHHHHHHHHHHH
Confidence 4567788999999999999999999999999988755544433211 12222 24566777777664
Q ss_pred HhcCCCCC
Q 048108 93 LMLHPDKN 100 (193)
Q Consensus 93 ~~~HPDk~ 100 (193)
..+|+..
T Consensus 245 -~~yP~s~ 251 (263)
T PRK10803 245 -KKYPGTD 251 (263)
T ss_pred -HHCcCCH
Confidence 4567755
No 300
>PHA00689 hypothetical protein
Probab=44.17 E-value=11 Score=23.83 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=15.0
Q ss_pred ccccccCccCCCcceEecc
Q 048108 173 RAKAIFCQCQGRRKIVILR 191 (193)
Q Consensus 173 ~~~~~~C~~C~~~~~v~~~ 191 (193)
...+|.|+.||-+|..|.+
T Consensus 14 epravtckrcgktglrwed 32 (62)
T PHA00689 14 EPRAVTCKRCGKTGLRWED 32 (62)
T ss_pred CcceeehhhccccCceeec
Confidence 4567999999999887765
No 301
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=44.14 E-value=67 Score=30.34 Aligned_cols=34 Identities=12% Similarity=0.021 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD 45 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~ 45 (193)
++.-|=+++..+-+....++|+.-|++|+.|-|.
T Consensus 463 d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~ 496 (579)
T KOG1125|consen 463 DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG 496 (579)
T ss_pred hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC
Confidence 3334444444444444455555555555555554
No 302
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=44.09 E-value=17 Score=26.87 Aligned_cols=16 Identities=6% Similarity=-0.091 Sum_probs=11.6
Q ss_pred cccCccCCCcceEecc
Q 048108 176 AIFCQCQGRRKIVILR 191 (193)
Q Consensus 176 ~~~C~~C~~~~~v~~~ 191 (193)
...|+.|.|+|.++=.
T Consensus 75 ~~~C~~C~G~Gk~~C~ 90 (111)
T PLN03165 75 VSKCINCDGAGSLTCT 90 (111)
T ss_pred EEECCCCCCcceeeCC
Confidence 4678888888876533
No 303
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=44.04 E-value=55 Score=23.72 Aligned_cols=33 Identities=21% Similarity=0.072 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFN 43 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~ 43 (193)
..|..++..|+.++..||.+.|--++.+...+.
T Consensus 36 rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 36 RSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999998876
No 304
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=43.81 E-value=1.8e+02 Score=27.19 Aligned_cols=32 Identities=28% Similarity=0.216 Sum_probs=20.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 16 ARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 16 ~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
.-.+|+.+++.|++++|...+......+|+..
T Consensus 41 ~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~ 72 (517)
T PF12569_consen 41 LEKRAELLLKLGRKEEAEKIYRELIDRNPDNY 72 (517)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 34556666666676677766666666666653
No 305
>PRK14279 chaperone protein DnaJ; Provisional
Probab=43.45 E-value=20 Score=32.04 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=14.7
Q ss_pred ccccCccCCCcceEecccC
Q 048108 175 KAIFCQCQGRRKIVILRNC 193 (193)
Q Consensus 175 ~~~~C~~C~~~~~v~~~~c 193 (193)
....|+.|+|+|.++.++|
T Consensus 211 ~~~~C~~C~G~G~~i~~~C 229 (392)
T PRK14279 211 FSEPCTDCRGTGSIIEDPC 229 (392)
T ss_pred EEEecCCCCceeEEeCCcC
Confidence 3467888888888888777
No 306
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=43.16 E-value=16 Score=26.85 Aligned_cols=11 Identities=18% Similarity=0.507 Sum_probs=8.3
Q ss_pred ccCCCCCCCCC
Q 048108 140 MSCSCCRPQGA 150 (193)
Q Consensus 140 ~~c~~c~~~~~ 150 (193)
..||.|+..|.
T Consensus 10 R~Cp~CG~kFY 20 (108)
T PF09538_consen 10 RTCPSCGAKFY 20 (108)
T ss_pred ccCCCCcchhc
Confidence 46888888875
No 307
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=42.98 E-value=11 Score=25.01 Aligned_cols=30 Identities=27% Similarity=0.513 Sum_probs=22.7
Q ss_pred cchhhhhcCCCCCCCHHHH-HHHHHHHHHhcCCCCC
Q 048108 66 STLYKILAITDPQVDISVI-KKQFKKMALMLHPDKN 100 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~I-k~aYr~l~~~~HPDk~ 100 (193)
.+++++||+ +++++ ......+....|||-.
T Consensus 6 ~~~~~i~G~-----~~~~~~~~~~~~~~~~ihpdD~ 36 (91)
T PF08447_consen 6 DNFYEIFGY-----SPEEIGKPDFEEWLERIHPDDR 36 (91)
T ss_dssp THHHHHHTS------HHHHTCBEHHHHHHHB-TTTH
T ss_pred HHHHHHhCC-----CHHHhccCCHHHHHhhcCHHHH
Confidence 578999999 55777 6677778889999855
No 308
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=42.92 E-value=3.7e+02 Score=27.13 Aligned_cols=39 Identities=10% Similarity=-0.060 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
......+..++..+...++++.|+.....+...+|+.-.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~ 66 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS 66 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee
Confidence 456778889999999999999999999999999999754
No 309
>COG2250 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=42.85 E-value=59 Score=24.47 Aligned_cols=33 Identities=24% Similarity=0.215 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
-..|..-+..|...+..|+|+.|....++|.++
T Consensus 10 ~~rA~~~l~~A~~~le~G~y~~a~f~aqQAvel 42 (132)
T COG2250 10 LRRAERDLKLAKRDLELGDYDLACFHAQQAVEL 42 (132)
T ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 356788888888899999999999999988875
No 310
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=42.84 E-value=45 Score=21.78 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108 14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD 45 (193)
Q Consensus 14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~ 45 (193)
..+...|...-..||.+.|+++++-++.+++.
T Consensus 9 ~~yk~Aa~~AK~~gd~~kAr~~~R~~K~~~~~ 40 (59)
T smart00685 9 EQYKQAALQAKRAGDEEKARRHLRIAKQFDDA 40 (59)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhHHHH
Confidence 56677788889999999999999999876554
No 311
>PRK14297 chaperone protein DnaJ; Provisional
Probab=42.44 E-value=12 Score=33.28 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=12.8
Q ss_pred cccCccCCCcceEecccC
Q 048108 176 AIFCQCQGRRKIVILRNC 193 (193)
Q Consensus 176 ~~~C~~C~~~~~v~~~~c 193 (193)
...|+.|+|+|.++..+|
T Consensus 191 ~~~C~~C~G~G~~~~~~C 208 (380)
T PRK14297 191 TTTCDKCGGSGKVIEDPC 208 (380)
T ss_pred EEeCCCCCCCceEcCCCC
Confidence 456777777777777666
No 312
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.38 E-value=32 Score=34.46 Aligned_cols=67 Identities=16% Similarity=0.173 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHcCCCchhhhhhhhhhhcccccccCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCCc
Q 048108 106 DGAFKLIRSANNVLTDPGKRKAFDNRIRLNKVKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRR 185 (193)
Q Consensus 106 ~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~~~~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~~ 185 (193)
...|..|...|.-+.....|. |....-..++--..||.|.+.+... .-..+.....+.|+.|+|+
T Consensus 704 ~~~~d~iR~lfa~~~~a~~~g-~~~~~FSfN~~~G~C~~C~G~G~~~--------------~~~~f~~~~~~~C~~C~G~ 768 (924)
T TIGR00630 704 TGVFDEIRELFAETPEAKARG-YTPGRFSFNVKGGRCEACQGDGVIK--------------IEMHFLPDVYVPCEVCKGK 768 (924)
T ss_pred hhhHHHHHHHHhcCCccccCC-CChhhcCCCCCCCCCCCCccceEEE--------------EEccCCCCcccCCCCcCCc
Confidence 466888888887776543332 3222221222235699999988521 1112233357899999998
Q ss_pred ce
Q 048108 186 KI 187 (193)
Q Consensus 186 ~~ 187 (193)
++
T Consensus 769 R~ 770 (924)
T TIGR00630 769 RY 770 (924)
T ss_pred ee
Confidence 75
No 313
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=42.12 E-value=16 Score=32.14 Aligned_cols=22 Identities=14% Similarity=-0.008 Sum_probs=11.2
Q ss_pred eeeCCCCccccccCccCCCcce
Q 048108 166 TSCPRKYRAKAIFCQCQGRRKI 187 (193)
Q Consensus 166 ~~c~~~~~~~~~~C~~C~~~~~ 187 (193)
.+|..|...-..-|..|.|||.
T Consensus 235 ~~C~~C~G~G~~~C~tC~grG~ 256 (406)
T KOG2813|consen 235 DLCYMCHGRGIKECHTCKGRGK 256 (406)
T ss_pred chhhhccCCCcccCCcccCCCC
Confidence 3444444444555555555553
No 314
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=41.54 E-value=46 Score=31.48 Aligned_cols=70 Identities=21% Similarity=0.154 Sum_probs=35.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccc--cchhhhhcCCCCCC-CHHHHHH
Q 048108 16 ARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETK--STLYKILAITDPQV-DISVIKK 86 (193)
Q Consensus 16 ~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~--~d~Y~vLgv~~~~a-~~~~Ik~ 86 (193)
+.+++-.+.+.+.+++|+.++++|..+.|....+-.-+.-+..++.--.+ ..|.+-|.+ .|+- ...++-+
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l-~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL-KPDNIFISELLK 530 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc-CCccHHHHHHHH
Confidence 44566666666666777777777777666664433333333222221111 345566666 5443 3334333
No 315
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=41.44 E-value=1e+02 Score=22.75 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=27.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 19 AAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 19 ~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
+|..++..||.-.|++..+.....+++...
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~ 31 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDES 31 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCc
Confidence 688999999999999999999999998864
No 316
>PRK14287 chaperone protein DnaJ; Provisional
Probab=41.28 E-value=12 Score=33.22 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=11.0
Q ss_pred ccCccCCCcceEecccC
Q 048108 177 IFCQCQGRRKIVILRNC 193 (193)
Q Consensus 177 ~~C~~C~~~~~v~~~~c 193 (193)
..|+.|.|+|.++.++|
T Consensus 182 ~~C~~C~G~G~~~~~~C 198 (371)
T PRK14287 182 RVCHHCEGTGKIIKQKC 198 (371)
T ss_pred EeCCCCCCCCccccccC
Confidence 45666666666666655
No 317
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.17 E-value=81 Score=24.30 Aligned_cols=40 Identities=13% Similarity=0.042 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 048108 16 ARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRV 58 (193)
Q Consensus 16 ~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~ 58 (193)
-+.++|.++..|+++++...+-.|..++|.+ .++|..++.
T Consensus 84 qv~lGE~L~~qg~~e~ga~h~~nAi~vcgqp---aqLL~vlq~ 123 (143)
T KOG4056|consen 84 QVQLGEELLAQGNEEEGAEHLANAIVVCGQP---AQLLQVLQQ 123 (143)
T ss_pred HHHhHHHHHHccCHHHHHHHHHHHHhhcCCH---HHHHHHHHh
Confidence 3688999999999999999999999999998 456666554
No 318
>PRK15331 chaperone protein SicA; Provisional
Probab=40.84 E-value=82 Score=24.94 Aligned_cols=41 Identities=7% Similarity=-0.172 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
|.-+.+-++.+|.++...++|+.|+..|.-|..++++++..
T Consensus 67 d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p 107 (165)
T PRK15331 67 DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP 107 (165)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc
Confidence 34456678999999999999999999999999999887643
No 319
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=40.69 E-value=80 Score=27.95 Aligned_cols=36 Identities=8% Similarity=0.079 Sum_probs=23.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 048108 20 AEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTA 55 (193)
Q Consensus 20 A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~ 55 (193)
|+.++..|+++.|+..+++..+..|..+.+..++..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~ 195 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEE 195 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 555666677777777777777777776554444433
No 320
>PF14353 CpXC: CpXC protein
Probab=40.43 E-value=20 Score=26.48 Aligned_cols=11 Identities=18% Similarity=0.622 Sum_probs=8.9
Q ss_pred ccCCCCCCCCC
Q 048108 140 MSCSCCRPQGA 150 (193)
Q Consensus 140 ~~c~~c~~~~~ 150 (193)
..||.|+..+.
T Consensus 2 itCP~C~~~~~ 12 (128)
T PF14353_consen 2 ITCPHCGHEFE 12 (128)
T ss_pred cCCCCCCCeeE
Confidence 46999998885
No 321
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=40.36 E-value=72 Score=25.11 Aligned_cols=48 Identities=21% Similarity=0.318 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHH-HHHHHHHHh
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDD-YFTACRVHQ 60 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~-~l~~~~~~~ 60 (193)
...++++|.=+.+.||++.|++.|.++.....+...+-+ .+..+++.+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i 84 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAI 84 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999988777653333 344445433
No 322
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=40.17 E-value=72 Score=24.34 Aligned_cols=33 Identities=18% Similarity=0.141 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFN 43 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~ 43 (193)
+.+.+.+.+|..++..+|+..+...+.||..+.
T Consensus 29 eg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii 61 (132)
T COG1516 29 EGALKFLKRAKEAIEQEDIEEKNESIDKAIDII 61 (132)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999988753
No 323
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=39.44 E-value=1.8e+02 Score=22.82 Aligned_cols=70 Identities=13% Similarity=0.119 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc-cccchhhhhcCCCCCCCHHHHHHHH
Q 048108 18 DAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE-TKSTLYKILAITDPQVDISVIKKQF 88 (193)
Q Consensus 18 ~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~-~~~d~Y~vLgv~~~~a~~~~Ik~aY 88 (193)
--|..++..|+|.+|++.++....-.|..+-...++..+-..+... -+.--.++|.- ..+.+...|-++.
T Consensus 49 ~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr~~A~evle~-~~d~~a~~Lv~~L 119 (160)
T PF09613_consen 49 FDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWRRYADEVLES-GADPDARALVRAL 119 (160)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhc-CCChHHHHHHHHH
Confidence 3455677777777777777777777666665556655553222111 11222445655 4444444444333
No 324
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=39.41 E-value=19 Score=26.51 Aligned_cols=12 Identities=17% Similarity=0.160 Sum_probs=8.4
Q ss_pred cccCCCCCCCCC
Q 048108 139 LMSCSCCRPQGA 150 (193)
Q Consensus 139 ~~~c~~c~~~~~ 150 (193)
...|..|+..+.
T Consensus 70 ~~~C~~Cg~~~~ 81 (113)
T PRK12380 70 QAWCWDCSQVVE 81 (113)
T ss_pred EEEcccCCCEEe
Confidence 457888886665
No 325
>PTZ00043 cytochrome c oxidase subunit; Provisional
Probab=38.55 E-value=1e+02 Score=25.85 Aligned_cols=38 Identities=13% Similarity=0.039 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcC
Q 048108 81 ISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLT 120 (193)
Q Consensus 81 ~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLs 120 (193)
..-++++|++||+-.--... .+..+.+..+-+-|++|.
T Consensus 95 ~~l~~ksykqla~d~gmqi~--~~~~~hm~~~le~y~~Lk 132 (268)
T PTZ00043 95 ETLPKKSYKQLARDMGMQIV--NEPSEHMLGLLELYEYLK 132 (268)
T ss_pred hhcchHHHHHHHHHhCceec--CCchHHHHHHHHHHHhcC
Confidence 44589999999985432222 233566777888999985
No 326
>PRK14288 chaperone protein DnaJ; Provisional
Probab=38.39 E-value=28 Score=30.81 Aligned_cols=17 Identities=18% Similarity=0.342 Sum_probs=13.3
Q ss_pred ccCccCCCcceEecccC
Q 048108 177 IFCQCQGRRKIVILRNC 193 (193)
Q Consensus 177 ~~C~~C~~~~~v~~~~c 193 (193)
..|+.|+|+|.++.++|
T Consensus 179 ~~C~~C~G~G~~~~~~C 195 (369)
T PRK14288 179 QTCGACQGKGKIIKTPC 195 (369)
T ss_pred EecCCCCCCceEccccC
Confidence 46888888888887777
No 327
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling [] and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding [].; PDB: 3IHV_A 3LEW_A 3JQ1_A 3JQ0_A 3NQP_B 3SNX_A 3L22_A 3OTN_A 3IV0_A 3QNK_C ....
Probab=38.24 E-value=64 Score=25.93 Aligned_cols=29 Identities=28% Similarity=0.201 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKE 41 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~ 41 (193)
|+-+|-.||+....|+..+|+.++.+...
T Consensus 133 aEvyL~~AEA~~~~g~~~~A~~~lN~vR~ 161 (266)
T PF07980_consen 133 AEVYLIYAEALARLGNTAEALEYLNQVRK 161 (266)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 78899999999999999999999998775
No 328
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=38.18 E-value=54 Score=30.58 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=15.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 18 DAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 18 ~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
-+|.-+-..|+++.|+.++.+|....|+.
T Consensus 199 ~lAqhyd~~g~~~~Al~~Id~aI~htPt~ 227 (517)
T PF12569_consen 199 FLAQHYDYLGDYEKALEYIDKAIEHTPTL 227 (517)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Confidence 34444555555555555555555555554
No 329
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.09 E-value=81 Score=29.59 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTAC 56 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~ 56 (193)
.|++.+++|.+.+..|||.=+...+.++.-.+|.....+.+.+.+
T Consensus 451 GadrVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~ 495 (655)
T COG2015 451 GADRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADA 495 (655)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhH
Confidence 478899999999999999999999999999999998777776544
No 330
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=37.61 E-value=30 Score=29.54 Aligned_cols=25 Identities=16% Similarity=0.416 Sum_probs=15.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 23 YFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 23 ~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
++..++++.|.+...+...++|..+
T Consensus 191 ~~~e~~~~~al~~~~r~l~l~P~dp 215 (269)
T COG2912 191 LLRELQWELALRVAERLLDLNPEDP 215 (269)
T ss_pred HHHhhchHHHHHHHHHHHhhCCCCh
Confidence 4555566666666666666666543
No 331
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=37.58 E-value=71 Score=26.41 Aligned_cols=48 Identities=25% Similarity=0.292 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVH 59 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~ 59 (193)
++.-++.+|...|..+++..|...+++.-+.+|....-+-+|.-.+++
T Consensus 123 d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 123 DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 445567777777777777777777777777777654444444444443
No 332
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=37.46 E-value=30 Score=21.97 Aligned_cols=11 Identities=18% Similarity=0.637 Sum_probs=7.6
Q ss_pred ccCCCCCCCCC
Q 048108 140 MSCSCCRPQGA 150 (193)
Q Consensus 140 ~~c~~c~~~~~ 150 (193)
..||+|+....
T Consensus 4 kPCPFCG~~~~ 14 (61)
T PF14354_consen 4 KPCPFCGSADV 14 (61)
T ss_pred cCCCCCCCcce
Confidence 47999965553
No 333
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.27 E-value=31 Score=30.64 Aligned_cols=71 Identities=20% Similarity=0.085 Sum_probs=48.4
Q ss_pred ccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhc--ccccchhhhhcC
Q 048108 4 MLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLS--ETKSTLYKILAI 74 (193)
Q Consensus 4 ~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~--~~~~d~Y~vLgv 74 (193)
-+++.|...|.-...+|..++..+....|++++..|..++|+...-..+-..+++++.. ....|+-.++.+
T Consensus 139 ~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 139 SAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred cccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 35777888888888888888899999999999999999888865433333333333322 223555556555
No 334
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=37.23 E-value=82 Score=29.84 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTAC 56 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~ 56 (193)
..+.-.-.+|-.+.-.|+++.|+.++.||.-+.|...-++++|..+
T Consensus 487 k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 487 KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 3455556788899999999999999999999999998788888755
No 335
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=37.11 E-value=22 Score=26.17 Aligned_cols=12 Identities=17% Similarity=0.426 Sum_probs=8.7
Q ss_pred cccCCCCCCCCC
Q 048108 139 LMSCSCCRPQGA 150 (193)
Q Consensus 139 ~~~c~~c~~~~~ 150 (193)
...|+.|+..+.
T Consensus 70 ~~~C~~Cg~~~~ 81 (115)
T TIGR00100 70 ECECEDCSEEVS 81 (115)
T ss_pred EEEcccCCCEEe
Confidence 457888886665
No 336
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.09 E-value=1.7e+02 Score=24.92 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=34.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 048108 19 AAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVH 59 (193)
Q Consensus 19 ~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~ 59 (193)
+++.++..||+++|...+..+.+-+|..+...+.+-++-+.
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~ 224 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS 224 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 57899999999999999999999999998887666655443
No 337
>PF12487 DUF3703: Protein of unknown function (DUF3703) ; InterPro: IPR022172 This family of proteins is found in bacteria. Proteins in this family are typically between 113 and 135 amino acids in length.
Probab=37.08 E-value=1.7e+02 Score=21.62 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
-+..+..|...++.+|+..|-+.+++|.-+--...
T Consensus 9 ~~~el~~a~~a~~~~~~~~aw~hLErAHIlgQ~~~ 43 (112)
T PF12487_consen 9 YDAELEAAREALAAGDLQQAWRHLERAHILGQPYP 43 (112)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhHHhcCCch
Confidence 46778899999999999999999999998877664
No 338
>PRK14292 chaperone protein DnaJ; Provisional
Probab=36.87 E-value=18 Score=31.99 Aligned_cols=12 Identities=25% Similarity=0.675 Sum_probs=7.9
Q ss_pred cccCCCCCCCCC
Q 048108 139 LMSCSCCRPQGA 150 (193)
Q Consensus 139 ~~~c~~c~~~~~ 150 (193)
...|+.|.+.+.
T Consensus 139 ~~~C~~C~G~G~ 150 (371)
T PRK14292 139 LTECEHCHGSRT 150 (371)
T ss_pred eecCCCCccccc
Confidence 456777777664
No 339
>PRK00420 hypothetical protein; Validated
Probab=36.85 E-value=26 Score=25.92 Aligned_cols=11 Identities=18% Similarity=0.353 Sum_probs=8.8
Q ss_pred ccCCCCCCCCC
Q 048108 140 MSCSCCRPQGA 150 (193)
Q Consensus 140 ~~c~~c~~~~~ 150 (193)
..||.|+.+..
T Consensus 24 ~~CP~Cg~pLf 34 (112)
T PRK00420 24 KHCPVCGLPLF 34 (112)
T ss_pred CCCCCCCCcce
Confidence 58999997764
No 340
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=36.47 E-value=2e+02 Score=26.73 Aligned_cols=46 Identities=17% Similarity=0.086 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTAC 56 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~ 56 (193)
........+|..++..|++++|+..+.......|...-..++...+
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i 349 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDI 349 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4556778999999999999999999999999999876555554443
No 341
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=35.06 E-value=1.1e+02 Score=23.19 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=32.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcc----------HHHHHHHHHHHhhcccccchhh
Q 048108 23 YFKLQNIDMAIKTLKAAKEFNPDLPN----------IDDYFTACRVHQLSETKSTLYK 70 (193)
Q Consensus 23 ~~~~~d~~~A~~~~~~a~~l~p~~~~----------i~~~l~~~~~~~~~~~~~d~Y~ 70 (193)
+|..|||+.|+..+.-|.+..-..++ ++++.+.+..........++|-
T Consensus 58 ~~D~Gd~~~AL~~a~yAi~~~l~~P~~f~R~~~t~vaeev~~~a~~~~~~g~~~~~~~ 115 (132)
T PF05944_consen 58 LFDVGDFDGALDIAEYAIEHGLPMPDRFKRTLPTFVAEEVADWALRAAKAGQSFEPYF 115 (132)
T ss_pred hhcccCHHHHHHHHHHHHHcCCCccccccCcchHHHHHHHHHHHHHHHHcCCCCChHH
Confidence 57889999999999999997765442 4555555554444444444443
No 342
>PF08772 NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon like; InterPro: IPR014881 This entry corresponds to a zinc ribbon and is found on the RNA binding protein NOB1. ; PDB: 2CON_A.
Probab=35.05 E-value=23 Score=24.14 Aligned_cols=20 Identities=20% Similarity=0.496 Sum_probs=8.3
Q ss_pred eeeCCCCcc----ccccCccCCCc
Q 048108 166 TSCPRKYRA----KAIFCQCQGRR 185 (193)
Q Consensus 166 ~~c~~~~~~----~~~~C~~C~~~ 185 (193)
++|..|+.. ...+|+.||..
T Consensus 10 lrC~aCf~~t~~~~k~FCp~CGn~ 33 (73)
T PF08772_consen 10 LRCHACFKITKDMTKQFCPKCGNA 33 (73)
T ss_dssp EE-SSS--EES-SS--S-SSS--S
T ss_pred EEccccccCcCCCCceeCcccCCC
Confidence 666666543 44899999865
No 343
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=34.98 E-value=2.4e+02 Score=25.58 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHH
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYF 53 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l 53 (193)
+-...+.+|+..+..||+..|+.-+.++....|..+.+-.+.
T Consensus 152 ~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa 193 (400)
T COG3071 152 TLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLA 193 (400)
T ss_pred hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHH
Confidence 334456666777888888888888888888888776544443
No 344
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=34.71 E-value=1.8e+02 Score=21.19 Aligned_cols=77 Identities=12% Similarity=0.054 Sum_probs=44.1
Q ss_pred HHHHHHHHhhcccccchhhhhcCCCCCC-----CHHHHHHHHHHHHHhcCCCCCCCc-hHHHH-HHHHHHHHHH--cCCC
Q 048108 52 YFTACRVHQLSETKSTLYKILAITDPQV-----DISVIKKQFKKMALMLHPDKNSSV-AADGA-FKLIRSANNV--LTDP 122 (193)
Q Consensus 52 ~l~~~~~~~~~~~~~d~Y~vLgv~~~~a-----~~~~Ik~aYr~l~~~~HPDk~~~~-~a~~~-f~~i~~Ay~v--Lsd~ 122 (193)
+++.++.+.++ .+|++.||| +.+. +.=.|-+.|.+.....++....++ ..... =..+.+||+. =|+|
T Consensus 4 ~l~~l~~L~sA---EdFf~fF~V-~YDp~vv~V~RLHILkrF~~yL~~~~~~~~~~e~~~~~~~R~~L~~AY~dFv~S~p 79 (105)
T PF03206_consen 4 ILEELKKLSSA---EDFFDFFGV-PYDPKVVNVNRLHILKRFGQYLRAADFAPGLSEEEDWAAYRRALERAYQDFVTSTP 79 (105)
T ss_pred HHHHHHhccCH---HHHHHHhCC-CcchhHHHHhhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 44445555444 489999999 5443 344577888888887766422222 11222 2456788874 3556
Q ss_pred chhhhhhhhh
Q 048108 123 GKRKAFDNRI 132 (193)
Q Consensus 123 ~~R~~YD~~~ 132 (193)
..-+.+--+.
T Consensus 80 ~~ekvFkVf~ 89 (105)
T PF03206_consen 80 LEEKVFKVFK 89 (105)
T ss_pred hhhHHHHHHH
Confidence 5555544333
No 345
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=34.64 E-value=24 Score=19.07 Aligned_cols=9 Identities=44% Similarity=0.800 Sum_probs=5.3
Q ss_pred ccccCccCC
Q 048108 175 KAIFCQCQG 183 (193)
Q Consensus 175 ~~~~C~~C~ 183 (193)
.+..|+.||
T Consensus 13 ~~~~Cp~CG 21 (26)
T PF10571_consen 13 SAKFCPHCG 21 (26)
T ss_pred hcCcCCCCC
Confidence 346666665
No 346
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=34.47 E-value=1.1e+02 Score=26.86 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHH
Q 048108 18 DAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYF 53 (193)
Q Consensus 18 ~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l 53 (193)
..|..++.+|.+.+|..+.++++.++|-.+.....+
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~l 319 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGL 319 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHH
Confidence 356678999999999999999999999887544433
No 347
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=34.39 E-value=59 Score=27.63 Aligned_cols=49 Identities=14% Similarity=0.069 Sum_probs=17.4
Q ss_pred cccCCCCCCCCCCCCCCcccccccCcceeeCCCC---ccccccCccCCCcceE
Q 048108 139 LMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKY---RAKAIFCQCQGRRKIV 188 (193)
Q Consensus 139 ~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~---~~~~~~C~~C~~~~~v 188 (193)
...||-|++.-..+.-.+-.+ =....+.|.-|. +...+.|+.||-....
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~-~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~ 223 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGER-EGKRYLHCSLCGTEWRFVRIKCPYCGNTDHE 223 (290)
T ss_dssp -SS-TTT---EEEEEEE-------EEEEEETTT--EEE--TTS-TTT---SS-
T ss_pred CCcCCCCCCcCceEEEecCCC-CccEEEEcCCCCCeeeecCCCCcCCCCCCCc
Confidence 379999998863111000000 001336665554 5566889999876543
No 348
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=34.10 E-value=68 Score=30.29 Aligned_cols=40 Identities=20% Similarity=0.089 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
-|++.|+.|..++..+...++=-.|+.-++++++|+|+.-
T Consensus 314 qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl 353 (579)
T KOG1125|consen 314 QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNL 353 (579)
T ss_pred hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH
Confidence 3789999999999999999999999999999999999863
No 349
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=34.08 E-value=1.1e+02 Score=26.32 Aligned_cols=65 Identities=14% Similarity=0.081 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH--hhcccccchhhhhcC
Q 048108 10 KLAAEKARDAAEEYFKLQ---NIDMAIKTLKAAKEFNPDLPNIDDYFTACRVH--QLSETKSTLYKILAI 74 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~---d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~--~~~~~~~d~Y~vLgv 74 (193)
.+.++.++..|+.+.-+. +-..|...+.++..+||+......++...-.. --.+.-..|=.+|.+
T Consensus 187 g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 187 GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 345666777777755443 35677777777777777775444444433211 111112556666666
No 350
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=34.05 E-value=70 Score=27.40 Aligned_cols=80 Identities=15% Similarity=0.195 Sum_probs=40.2
Q ss_pred HhcCCCCCCCchHHHHHHHHHHHHH-HcCCCchhhhhhhhhhhcccccccCCCCCCCCCCCCCCcccccccCcceeeCCC
Q 048108 93 LMLHPDKNSSVAADGAFKLIRSANN-VLTDPGKRKAFDNRIRLNKVKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRK 171 (193)
Q Consensus 93 ~~~HPDk~~~~~a~~~f~~i~~Ay~-vLsd~~~R~~YD~~~~~~~~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~ 171 (193)
...||.+....-..+....+.+|-. ||. ..-...+.....|+. ..+..+.....+.+|.-....|+.|
T Consensus 183 agI~P~~~a~~l~~~~~~~l~~~i~~vl~-----~ai~~gGtt~r~~~~------~~g~~G~fq~~l~VYgR~GepC~~C 251 (273)
T COG0266 183 AGIHPARPAGDLSLAQLALLHEAIKDVLA-----DAIERGGTTLRDFVN------ADGKPGYFQQELKVYGRAGEPCRRC 251 (273)
T ss_pred cCCCcccCccccCHHHHHHHHHHHHHHHH-----HHHHhCCCcccceec------cCCCCCccceeEEEecCCCCCCCcc
Confidence 3568888765433344444444333 443 222333332222221 1222233334677887777777776
Q ss_pred Ccccc---------ccCccCC
Q 048108 172 YRAKA---------IFCQCQG 183 (193)
Q Consensus 172 ~~~~~---------~~C~~C~ 183 (193)
.-.+. .||+.|-
T Consensus 252 Gt~I~k~~~~gR~t~~CP~CQ 272 (273)
T COG0266 252 GTPIEKIKLGGRSTFYCPVCQ 272 (273)
T ss_pred CCEeEEEEEcCCcCEeCCCCC
Confidence 64332 8899883
No 351
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=33.77 E-value=82 Score=19.51 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhh
Q 048108 85 KKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNR 131 (193)
Q Consensus 85 k~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~ 131 (193)
.+.++...+.-||+. ...+....|...|..|++.++....+..
T Consensus 12 ~~~~~~~~~~~~~~~----~~~~i~~~~~~~W~~l~~~~k~~y~~~a 54 (66)
T cd00084 12 SQEHRAEVKAENPGL----SVGEISKILGEMWKSLSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHHHHCcCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 445566677778883 3567888999999999986665555443
No 352
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=33.70 E-value=32 Score=26.62 Aligned_cols=15 Identities=13% Similarity=0.085 Sum_probs=11.9
Q ss_pred cccCccCCCcceEec
Q 048108 176 AIFCQCQGRRKIVIL 190 (193)
Q Consensus 176 ~~~C~~C~~~~~v~~ 190 (193)
-..|+.|++..++..
T Consensus 130 l~~Cp~C~~~~F~R~ 144 (146)
T PF07295_consen 130 LPPCPKCGHTEFTRQ 144 (146)
T ss_pred CCCCCCCCCCeeeeC
Confidence 478999999887653
No 353
>PRK11032 hypothetical protein; Provisional
Probab=33.53 E-value=34 Score=26.92 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=18.5
Q ss_pred ceeeCCCCccc-------cccCccCCCcceEec
Q 048108 165 NTSCPRKYRAK-------AIFCQCQGRRKIVIL 190 (193)
Q Consensus 165 ~~~c~~~~~~~-------~~~C~~C~~~~~v~~ 190 (193)
.++|.+|.... -..|+.|++..+...
T Consensus 124 ~LvC~~Cg~~~~~~~p~~i~pCp~C~~~~F~R~ 156 (160)
T PRK11032 124 NLVCEKCHHHLAFYTPEVLPLCPKCGHDQFQRR 156 (160)
T ss_pred eEEecCCCCEEEecCCCcCCCCCCCCCCeeeeC
Confidence 36777766433 378999999988653
No 354
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.44 E-value=43 Score=30.98 Aligned_cols=41 Identities=17% Similarity=0.296 Sum_probs=26.1
Q ss_pred ccCCCCCCCCCCCCCCcccccccCcceeeCCCCcccc--ccCccCCCcceE
Q 048108 140 MSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKA--IFCQCQGRRKIV 188 (193)
Q Consensus 140 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~--~~C~~C~~~~~v 188 (193)
..||.|..+-. |.. ....+.|..|....+ ..|+.|++....
T Consensus 223 ~~C~~C~~~l~------~h~--~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~ 265 (505)
T TIGR00595 223 LCCPNCDVSLT------YHK--KEGKLRCHYCGYQEPIPKTCPQCGSEDLV 265 (505)
T ss_pred cCCCCCCCceE------Eec--CCCeEEcCCCcCcCCCCCCCCCCCCCeeE
Confidence 34666655443 222 244688988876654 789999987543
No 355
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=33.42 E-value=75 Score=26.83 Aligned_cols=10 Identities=20% Similarity=0.591 Sum_probs=6.5
Q ss_pred HhcCCCCCCC
Q 048108 93 LMLHPDKNSS 102 (193)
Q Consensus 93 ~~~HPDk~~~ 102 (193)
-..||.+...
T Consensus 183 a~I~P~~~~~ 192 (274)
T PRK01103 183 AGIHPERPAG 192 (274)
T ss_pred cCCCccCccc
Confidence 3468887654
No 356
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=33.28 E-value=51 Score=25.67 Aligned_cols=36 Identities=19% Similarity=0.104 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
+.|-.+-++|..+--.|+.++|+.++++|.++....
T Consensus 75 ~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 75 ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 344455566666667777777777777777776544
No 357
>TIGR00577 fpg formamidopyrimidine-DNA glycosylase (fpg). All proteins in the FPG family with known functions are FAPY-DNA glycosylases that function in base excision repair. Homologous to endonuclease VIII (nei). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.23 E-value=69 Score=27.08 Aligned_cols=9 Identities=22% Similarity=0.641 Sum_probs=5.8
Q ss_pred hcCCCCCCC
Q 048108 94 MLHPDKNSS 102 (193)
Q Consensus 94 ~~HPDk~~~ 102 (193)
..||.+...
T Consensus 184 ~I~P~~~~~ 192 (272)
T TIGR00577 184 GIHPERLAN 192 (272)
T ss_pred CCCcchhhc
Confidence 457877654
No 358
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=33.15 E-value=91 Score=26.61 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
.|+.-|.-+-++|.++|+..+|+-+..+-.+|++++|+.-.
T Consensus 39 ~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk 79 (284)
T KOG4642|consen 39 INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVK 79 (284)
T ss_pred cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHH
Confidence 34555677789999999999999999999999999999743
No 359
>PF06044 DRP: Dam-replacing family; InterPro: IPR010324 Dam-replacing protein (DRP) is a restriction endonuclease that is flanked by pseudo-transposable small repeat elements. The replacement of Dam-methylase by DRP allows phase variation through slippage-like mechanisms in several pathogenic isolates of Neisseria meningitidis [].; PDB: 4ESJ_A.
Probab=33.10 E-value=21 Score=30.05 Aligned_cols=31 Identities=13% Similarity=0.337 Sum_probs=10.6
Q ss_pred cccCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCC
Q 048108 139 LMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGR 184 (193)
Q Consensus 139 ~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~ 184 (193)
+..||.|+...- ..-++.....-.+|+.|+-
T Consensus 31 n~yCP~Cg~~~L---------------~~f~NN~PVaDF~C~~C~e 61 (254)
T PF06044_consen 31 NMYCPNCGSKPL---------------SKFENNRPVADFYCPNCNE 61 (254)
T ss_dssp H---TTT--SS----------------EE--------EEE-TTT--
T ss_pred CCcCCCCCChhH---------------hhccCCCccceeECCCCch
Confidence 578999999875 3334555666678888863
No 360
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=32.96 E-value=33 Score=25.31 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=8.8
Q ss_pred ccccCCCCCCCCC
Q 048108 138 KLMSCSCCRPQGA 150 (193)
Q Consensus 138 f~~~c~~c~~~~~ 150 (193)
-...|..|+..+.
T Consensus 70 ~~~~C~~Cg~~~~ 82 (117)
T PRK00564 70 VELECKDCSHVFK 82 (117)
T ss_pred CEEEhhhCCCccc
Confidence 3457888886665
No 361
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=32.68 E-value=83 Score=26.75 Aligned_cols=19 Identities=11% Similarity=0.239 Sum_probs=9.9
Q ss_pred hcCCCCCCCchHHHHHHHH
Q 048108 94 MLHPDKNSSVAADGAFKLI 112 (193)
Q Consensus 94 ~~HPDk~~~~~a~~~f~~i 112 (193)
..||.+....-..+.+..|
T Consensus 193 ~IhP~~~~~~Ls~~~~~~L 211 (282)
T PRK13945 193 GIHPTTPAGQLKKKQLERL 211 (282)
T ss_pred CCCccCccccCCHHHHHHH
Confidence 4688876643333333333
No 362
>smart00748 HEPN Higher Eukarytoes and Prokaryotes Nucleotide-binding domain.
Probab=32.65 E-value=88 Score=22.20 Aligned_cols=31 Identities=23% Similarity=0.085 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKE 41 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~ 41 (193)
+.|..-+..|...+..|.|+.|...+++|.+
T Consensus 2 ~~A~~~l~~A~~~~~~g~y~~a~f~aqqavE 32 (113)
T smart00748 2 RRAKRFLEAAKLDLEKGFYDLAAFLSQQAAE 32 (113)
T ss_pred chHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3688889999999999999999888888765
No 363
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=32.31 E-value=15 Score=35.43 Aligned_cols=61 Identities=23% Similarity=0.457 Sum_probs=39.8
Q ss_pred HHcCCCchhhhhhhhhhhcccccccCCCCCCCCCCCCCCccccccc--CcceeeCC-----------CCccccccCccCC
Q 048108 117 NVLTDPGKRKAFDNRIRLNKVKLMSCSCCRPQGAGDNNSPRASTYK--ANNTSCPR-----------KYRAKAIFCQCQG 183 (193)
Q Consensus 117 ~vLsd~~~R~~YD~~~~~~~~f~~~c~~c~~~~~~~~~~~~~~~~~--~~~~~c~~-----------~~~~~~~~C~~C~ 183 (193)
+-+-||..|+.- -. .+.|..|+..+...-.=||.|..+ ..+..|+. ++.++++.|+.||
T Consensus 109 ~Ei~dp~~rrY~-------YP-F~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~CG 180 (750)
T COG0068 109 EEIFDPNSRRYL-------YP-FINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPKCG 180 (750)
T ss_pred HHhcCCCCccee-------cc-ccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcccC
Confidence 345677777641 11 257888988887656666666543 23345543 6788999999998
Q ss_pred Cc
Q 048108 184 RR 185 (193)
Q Consensus 184 ~~ 185 (193)
-.
T Consensus 181 P~ 182 (750)
T COG0068 181 PH 182 (750)
T ss_pred CC
Confidence 64
No 364
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=32.23 E-value=55 Score=28.97 Aligned_cols=33 Identities=24% Similarity=0.492 Sum_probs=22.3
Q ss_pred HHHHHHHHHHcCCCchhhhhhhhhhhcccccccCCCCCCCC
Q 048108 109 FKLIRSANNVLTDPGKRKAFDNRIRLNKVKLMSCSCCRPQG 149 (193)
Q Consensus 109 f~~i~~Ay~vLsd~~~R~~YD~~~~~~~~f~~~c~~c~~~~ 149 (193)
-.+|.-||++|..=..|. ...-..+||.|+-..
T Consensus 237 ~~EV~va~~IL~slglr~--------~g~~iiSCPtCGR~~ 269 (346)
T TIGR00612 237 THEVPVAFEILQSLGLRA--------RGVEIVACPSCGRTG 269 (346)
T ss_pred HHHHHHHHHHHHHcCCCc--------CCCeEEECCCCCCcC
Confidence 567788888887544333 245567888887765
No 365
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.14 E-value=18 Score=32.10 Aligned_cols=38 Identities=29% Similarity=0.314 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
.+.|--....|...++.|+++.|+..+-+|+.++|...
T Consensus 111 ~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a 148 (377)
T KOG1308|consen 111 MDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLA 148 (377)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchh
Confidence 45677778889999999999999999999999999864
No 366
>PF05741 zf-nanos: Nanos RNA binding domain; InterPro: IPR024161 Nanos is a highly conserved RNA-binding protein in higher eukaryotes and functions as a key regulatory protein in translational control using a 3' untranslated region during the development and maintenance of germ cells. Nanos comprises a non-conserved amino-terminus and highly conserved carboxy- terminal regions. The C-terminal region has two conserved Cys-Cys-His-Cys (CCHC)-type zinc-finger motifs that are indispensable for nanos function [, , ]. The structure of the nanos-type zinc finger is composed of two independent zinc-finger (ZF) lobes, the N-terminal ZF1 and the C-terminal ZF2, which are connected by a linker helix []. These lobes create a large cleft. Zinc ions in ZF1 and ZF2 are bound to the CCHC motif by tetrahedral coordination.; PDB: 3ALR_B.
Probab=31.86 E-value=9.6 Score=24.61 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=4.3
Q ss_pred ccccCccCCCcce
Q 048108 175 KAIFCQCQGRRKI 187 (193)
Q Consensus 175 ~~~~C~~C~~~~~ 187 (193)
....|+-||.+|.
T Consensus 32 r~y~Cp~CgAtGd 44 (55)
T PF05741_consen 32 RKYVCPICGATGD 44 (55)
T ss_dssp GG---TTT---GG
T ss_pred hcCcCCCCcCcCc
Confidence 4467777877763
No 367
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=31.70 E-value=86 Score=26.52 Aligned_cols=9 Identities=22% Similarity=0.372 Sum_probs=6.2
Q ss_pred cccCccCCC
Q 048108 176 AIFCQCQGR 184 (193)
Q Consensus 176 ~~~C~~C~~ 184 (193)
..||+.|-.
T Consensus 255 ty~Cp~CQ~ 263 (269)
T PRK14811 255 THFCPQCQP 263 (269)
T ss_pred cEECCCCcC
Confidence 378888853
No 368
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=31.69 E-value=69 Score=22.82 Aligned_cols=37 Identities=19% Similarity=-0.065 Sum_probs=28.9
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
|-.+-.+|.-+.-.|-...+.|||++|...+..|...
T Consensus 7 iI~~aG~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~~ 43 (96)
T PF02255_consen 7 IISHAGDARSLAMEALKAAREGDFEEAEELLKEADEE 43 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3345567888888888899999999999999888754
No 369
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=31.40 E-value=38 Score=36.39 Aligned_cols=67 Identities=16% Similarity=0.071 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHcCCCchhhhhhhhhhhcccccccCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCCc
Q 048108 106 DGAFKLIRSANNVLTDPGKRKAFDNRIRLNKVKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRR 185 (193)
Q Consensus 106 ~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~~~~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~~ 185 (193)
...|..|.+.|.-+.+.. .+-|....-..+.--..|+.|.+.+.. ..-..+..-..+.|+.|+|+
T Consensus 1575 ~g~fd~IR~lFA~~~~ak-~rg~~~~~FSfN~~~GrC~~C~G~G~i--------------~i~m~fl~dv~~~C~~C~G~ 1639 (1809)
T PRK00635 1575 FDIAPSLRNFYASLTQAK-ALNISASMFSTNTKQGQCSDCWGLGYQ--------------WIDRAFYALEKRPCPTCSGF 1639 (1809)
T ss_pred hhhHHHHHHHHhcCHHHH-HcCCCcccccccCCCCCCCCCccCceE--------------EEecccCCCcccCCCCCCCc
Confidence 466888888887765433 333555443333334579999988851 11112344567899999998
Q ss_pred ce
Q 048108 186 KI 187 (193)
Q Consensus 186 ~~ 187 (193)
++
T Consensus 1640 R~ 1641 (1809)
T PRK00635 1640 RI 1641 (1809)
T ss_pred CC
Confidence 75
No 370
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=31.40 E-value=28 Score=18.60 Aligned_cols=10 Identities=30% Similarity=0.398 Sum_probs=6.7
Q ss_pred cccccCccCC
Q 048108 174 AKAIFCQCQG 183 (193)
Q Consensus 174 ~~~~~C~~C~ 183 (193)
+....||.||
T Consensus 14 ~v~f~CPnCG 23 (24)
T PF07754_consen 14 AVPFPCPNCG 23 (24)
T ss_pred CceEeCCCCC
Confidence 5556777776
No 371
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=31.15 E-value=1e+02 Score=27.76 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
..+++-+-|..+|+.|+..||++.|+..++..-.+
T Consensus 263 lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 263 LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 34555556666666666666666666555543333
No 372
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=31.06 E-value=1e+02 Score=19.29 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=28.5
Q ss_pred HHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhh
Q 048108 88 FKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRI 132 (193)
Q Consensus 88 Yr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~ 132 (193)
.|.....-||+. ...+..+.|.+.|..|++.++....+...
T Consensus 15 ~r~~~~~~~p~~----~~~~i~~~~~~~W~~ls~~eK~~y~~~a~ 55 (66)
T cd01390 15 QRPKLKKENPDA----SVTEVTKILGEKWKELSEEEKKKYEEKAE 55 (66)
T ss_pred HHHHHHHHCcCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344455567873 35688899999999999877665555443
No 373
>PF00401 ATP-synt_DE: ATP synthase, Delta/Epsilon chain, long alpha-helix domain; InterPro: IPR020547 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta (in mitochondrial ATPase) or epsilon (in bacteria or chloroplast ATPase). The interaction site of subunit C of the F0 complex with the delta or epsilon subunit of the F1 complex may be important for connecting the rotor of F1 (gamma subunit) to the rotor of F0 (C subunit) []. In bacterial species, the delta subunit is the equivalent of the Oligomycin sensitive subunit (OSCP, IPR000711 from INTERPRO) in metazoans. The C-terminal domain of the epsilon subunit appears to act as an inhibitor of ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OAA_P 1BSN_A 1FS0_E 1AQT_A 1BSH_A 2RQ7_A 2RQ6_A 2E5Y_A 2QE7_H 2E5T_A ....
Probab=30.72 E-value=1.1e+02 Score=18.68 Aligned_cols=34 Identities=29% Similarity=0.284 Sum_probs=23.8
Q ss_pred cCCHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHH
Q 048108 7 NLVKLAAEKARDAAEEYFKLQ----NIDMAIKTLKAAK 40 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~----d~~~A~~~~~~a~ 40 (193)
|.|.+.|...+.+|+..|... ++..|..-+.+|.
T Consensus 2 dID~~rA~~a~~~Ae~~l~~~~~~~e~~~A~~~L~rA~ 39 (48)
T PF00401_consen 2 DIDEERAEEAKERAEERLEKAKSDKEYARAQAALKRAI 39 (48)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSCSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHH
Confidence 456788999999999998643 4555555555543
No 374
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=30.70 E-value=39 Score=19.82 Aligned_cols=8 Identities=25% Similarity=0.684 Sum_probs=5.2
Q ss_pred ccCccCCC
Q 048108 177 IFCQCQGR 184 (193)
Q Consensus 177 ~~C~~C~~ 184 (193)
..|+.||-
T Consensus 33 ~~C~~CGE 40 (46)
T TIGR03831 33 LVCPQCGE 40 (46)
T ss_pred cccccCCC
Confidence 45777764
No 375
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=30.65 E-value=2e+02 Score=25.04 Aligned_cols=47 Identities=13% Similarity=0.322 Sum_probs=25.0
Q ss_pred ccCCCCCCCCCCC---CCC-cccccccCcceeeCCCCccccccCccCCCcce
Q 048108 140 MSCSCCRPQGAGD---NNS-PRASTYKANNTSCPRKYRAKAIFCQCQGRRKI 187 (193)
Q Consensus 140 ~~c~~c~~~~~~~---~~~-~~~~~~~~~~~~c~~~~~~~~~~C~~C~~~~~ 187 (193)
..||-|++.-... .+. .-...| -.|..|..--+...+.|+.||-.+.
T Consensus 185 ~~CPvCGs~P~~s~~~~~~~~~G~Ry-L~CslC~teW~~~R~~C~~Cg~~~~ 235 (305)
T TIGR01562 185 TLCPACGSPPVASMVRQGGKETGLRY-LSCSLCATEWHYVRVKCSHCEESKH 235 (305)
T ss_pred CcCCCCCChhhhhhhcccCCCCCceE-EEcCCCCCcccccCccCCCCCCCCc
Confidence 3899999986311 110 011122 1233333333566788999987654
No 376
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=30.63 E-value=2.6e+02 Score=21.81 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 048108 18 DAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACR 57 (193)
Q Consensus 18 ~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~ 57 (193)
..+...-..|++++|+..+.+|..+.|... +.+-..++
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~ra--SayNNRAQ 85 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERA--SAYNNRAQ 85 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccch--HhhccHHH
Confidence 345556678999999999999999999874 44444333
No 377
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=29.92 E-value=71 Score=28.33 Aligned_cols=40 Identities=18% Similarity=0.071 Sum_probs=33.4
Q ss_pred ccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 048108 4 MLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFN 43 (193)
Q Consensus 4 ~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~ 43 (193)
|+|-.....|.-+...|...-++++|++|.++|+.|...+
T Consensus 1 ms~~~~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF 40 (439)
T KOG0739|consen 1 MSNGSFLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYF 40 (439)
T ss_pred CCcchHHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHH
Confidence 5566667788888899999999999999999998887754
No 378
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=29.88 E-value=44 Score=34.56 Aligned_cols=11 Identities=18% Similarity=0.579 Sum_probs=7.2
Q ss_pred cccCCCCCCCC
Q 048108 139 LMSCSCCRPQG 149 (193)
Q Consensus 139 ~~~c~~c~~~~ 149 (193)
...||.|+...
T Consensus 667 ~rkCPkCG~~t 677 (1337)
T PRK14714 667 RRRCPSCGTET 677 (1337)
T ss_pred EEECCCCCCcc
Confidence 46777777643
No 379
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.86 E-value=4.2e+02 Score=25.49 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=22.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 19 AAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 19 ~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
+|......|+|++|+..|+...+-+-..
T Consensus 116 ~AQvlYrl~~ydealdiY~~L~kn~~dd 143 (652)
T KOG2376|consen 116 RAQVLYRLERYDEALDIYQHLAKNNSDD 143 (652)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence 6788888999999999999886655544
No 380
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=29.80 E-value=99 Score=20.20 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108 86 KQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIR 133 (193)
Q Consensus 86 ~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 133 (193)
+..|.....-||+. ...+..+.|.+.|..|++.++...+|....
T Consensus 14 ~~~r~~~~~~~p~~----~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~ 57 (72)
T cd01388 14 KRHRRKVLQEYPLK----ENRAISKILGDRWKALSNEEKQPYYEEAKK 57 (72)
T ss_pred HHHHHHHHHHCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455666678874 345788899999999998887776665443
No 381
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=29.67 E-value=23 Score=29.72 Aligned_cols=12 Identities=33% Similarity=0.905 Sum_probs=9.3
Q ss_pred ccccccCccCCC
Q 048108 173 RAKAIFCQCQGR 184 (193)
Q Consensus 173 ~~~~~~C~~C~~ 184 (193)
....|+||.||+
T Consensus 218 ~d~iv~CP~CgR 229 (239)
T COG1579 218 KDEIVFCPYCGR 229 (239)
T ss_pred CCCCccCCccch
Confidence 445599999996
No 382
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=29.58 E-value=46 Score=29.37 Aligned_cols=12 Identities=25% Similarity=0.229 Sum_probs=7.4
Q ss_pred ccCccCCCcceE
Q 048108 177 IFCQCQGRRKIV 188 (193)
Q Consensus 177 ~~C~~C~~~~~v 188 (193)
.-|.-|.|+|+.
T Consensus 235 ~~C~~C~G~G~~ 246 (406)
T KOG2813|consen 235 DLCYMCHGRGIK 246 (406)
T ss_pred chhhhccCCCcc
Confidence 556666666654
No 383
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=29.53 E-value=2.3e+02 Score=23.71 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Q 048108 11 LAAEKARDAAEEYFKLQ-NIDMAIKTLKAAKEFN 43 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~-d~~~A~~~~~~a~~l~ 43 (193)
.=|..+.+++...++.+ +++.|..++++|..+-
T Consensus 33 ~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l 66 (278)
T PF08631_consen 33 ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDIL 66 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 34788899999999999 9999999999999983
No 384
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=29.52 E-value=84 Score=22.58 Aligned_cols=39 Identities=13% Similarity=-0.167 Sum_probs=30.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNP 44 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p 44 (193)
+-++-.+|.-+.-.|-...+.|||+.|...+..|....-
T Consensus 10 iI~~aG~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~~l~ 48 (99)
T TIGR00823 10 LIAYAGDARSKALEALKAAKAGDFAKARALVEQAGMCLN 48 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 334556777788888889999999999999998876543
No 385
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=29.48 E-value=34 Score=20.84 Aligned_cols=11 Identities=18% Similarity=0.564 Sum_probs=7.6
Q ss_pred ccCCCCCCCCC
Q 048108 140 MSCSCCRPQGA 150 (193)
Q Consensus 140 ~~c~~c~~~~~ 150 (193)
..|..|+...+
T Consensus 3 Y~C~~Cg~~~~ 13 (44)
T smart00659 3 YICGECGRENE 13 (44)
T ss_pred EECCCCCCEee
Confidence 46777777665
No 386
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=29.41 E-value=99 Score=16.52 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHHh
Q 048108 15 KARDAAEEYFKL----QNIDMAIKTLKAAKEF 42 (193)
Q Consensus 15 ~~~~~A~~~~~~----~d~~~A~~~~~~a~~l 42 (193)
.+..+|..++.- .|...|..++++|.+.
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 455666666643 3889999999888764
No 387
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=29.29 E-value=1e+02 Score=25.93 Aligned_cols=36 Identities=17% Similarity=0.082 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
..+...-+|..++..||++.|...++++...+|...
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~ 77 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL 77 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 455666778889999999999999999999999875
No 388
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=29.13 E-value=39 Score=19.20 Aligned_cols=11 Identities=36% Similarity=0.588 Sum_probs=7.1
Q ss_pred ccccCccCCCc
Q 048108 175 KAIFCQCQGRR 185 (193)
Q Consensus 175 ~~~~C~~C~~~ 185 (193)
.++-|+.||.|
T Consensus 16 ~~irC~~CG~R 26 (32)
T PF03604_consen 16 DPIRCPECGHR 26 (32)
T ss_dssp STSSBSSSS-S
T ss_pred CcEECCcCCCe
Confidence 44778888765
No 389
>PRK14873 primosome assembly protein PriA; Provisional
Probab=29.10 E-value=49 Score=31.87 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=25.6
Q ss_pred cccCCCCCCCCCCCCCCcccccccCcceeeCCCCc-cccccCccCCCcceE
Q 048108 139 LMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYR-AKAIFCQCQGRRKIV 188 (193)
Q Consensus 139 ~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~-~~~~~C~~C~~~~~v 188 (193)
...|+.|..+-. |.. ....+.|..|.. .....|+.||+....
T Consensus 392 ~~~C~~C~~~L~------~h~--~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~ 434 (665)
T PRK14873 392 PARCRHCTGPLG------LPS--AGGTPRCRWCGRAAPDWRCPRCGSDRLR 434 (665)
T ss_pred eeECCCCCCcee------Eec--CCCeeECCCCcCCCcCccCCCCcCCcce
Confidence 345666655554 322 134577887754 346789999997544
No 390
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=28.90 E-value=87 Score=31.45 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108 15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPD 45 (193)
Q Consensus 15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~ 45 (193)
+|..+|..|-+.|++..|+.|+.+|+.+...
T Consensus 969 AcYhlaR~YEn~g~v~~Av~FfTrAqafsnA 999 (1416)
T KOG3617|consen 969 ACYHLARMYENDGDVVKAVKFFTRAQAFSNA 999 (1416)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4677888899999999999999999876654
No 391
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=28.80 E-value=32 Score=27.50 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=16.2
Q ss_pred ceeeCCCC--ccccccCccCCCcceEe
Q 048108 165 NTSCPRKY--RAKAIFCQCQGRRKIVI 189 (193)
Q Consensus 165 ~~~c~~~~--~~~~~~C~~C~~~~~v~ 189 (193)
+..|+-|. ..+--.||.||+.|.-|
T Consensus 162 cilCtvCe~r~w~g~~CPKCGr~G~pi 188 (200)
T PF12387_consen 162 CILCTVCEGREWKGGNCPKCGRHGKPI 188 (200)
T ss_pred eEEEeeeecCccCCCCCCcccCCCCCe
Confidence 45554433 33446799999999755
No 392
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=28.77 E-value=2e+02 Score=26.80 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCccHHH
Q 048108 11 LAAEKARDAAEEYFKLQN---IDMAIKTLKAAKEFNPDLPNIDD 51 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d---~~~A~~~~~~a~~l~p~~~~i~~ 51 (193)
.+|.-+.-+|..++..++ +..|+.++++|..++|+...+-.
T Consensus 337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A 380 (517)
T PRK10153 337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQA 380 (517)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 367778888888888766 88999999999999999754333
No 393
>PF14369 zf-RING_3: zinc-finger
Probab=28.71 E-value=40 Score=19.46 Aligned_cols=11 Identities=18% Similarity=0.256 Sum_probs=8.1
Q ss_pred ccCccCCCcceE
Q 048108 177 IFCQCQGRRKIV 188 (193)
Q Consensus 177 ~~C~~C~~~~~v 188 (193)
+.|+.|++ |+|
T Consensus 22 ~~CP~C~~-gFv 32 (35)
T PF14369_consen 22 VACPRCHG-GFV 32 (35)
T ss_pred cCCcCCCC-cEe
Confidence 57999996 554
No 394
>PF05207 zf-CSL: CSL zinc finger; InterPro: IPR007872 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a probable zinc binding motif that contains four cysteines and may chelate zinc, known as the DPH-type after the diphthamide (DPH) biosynthesis protein in which it was first characterised, including the proteins DPH3 and DPH4. This domain is also found associated with N-terminal domain of heat shock protein DnaJ IPR001623 from INTERPRO domain. Diphthamide is a unique post-translationally modified histidine residue found only in translation elongation factor 2 (eEF-2). It is conserved from archaea to humans and serves as the target for diphteria toxin and Pseudomonas exotoxin A. These two toxins catalyse the transfer of ADP-ribose to diphtamide on eEF-2, thus inactivating eEF-2, halting cellular protein synthesis, and causing cell death []. The biosynthesis of diphtamide is dependent on at least five proteins, DPH1 to -5, and a still unidentified amidating enzyme. DPH3 and DPH4 share a conserved region, which encode a putative zinc finger, the DPH-type or CSL-type (after the conserved motif of the final cysteine) zinc finger [, ]. The function of this motif is unknown. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2L6L_A 1WGE_A 2JR7_A 1YOP_A 1YWS_A.
Probab=28.66 E-value=10 Score=24.23 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=22.3
Q ss_pred cccccccCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCCcceEe
Q 048108 135 NKVKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRRKIVI 189 (193)
Q Consensus 135 ~~~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~~~~v~ 189 (193)
...|...| +|+..+. ....-+... ..-+.|++||-.=.|.
T Consensus 14 ~~~~~y~C-RCG~~f~------i~e~~l~~~--------~~iv~C~sCSL~I~V~ 53 (55)
T PF05207_consen 14 EGVYSYPC-RCGGEFE------ISEEDLEEG--------EVIVQCDSCSLWIRVN 53 (55)
T ss_dssp TTEEEEEE-TTSSEEE------EEHHHHHCT----------EEEETTTTEEEEEE
T ss_pred CCEEEEcC-CCCCEEE------EcchhccCc--------CEEEECCCCccEEEEE
Confidence 34677788 9988875 222211111 4457788887665554
No 395
>PRK04023 DNA polymerase II large subunit; Validated
Probab=28.62 E-value=40 Score=34.02 Aligned_cols=14 Identities=14% Similarity=0.522 Sum_probs=9.1
Q ss_pred ccccccCCCCCCCC
Q 048108 136 KVKLMSCSCCRPQG 149 (193)
Q Consensus 136 ~~f~~~c~~c~~~~ 149 (193)
+.-..+|+.|+...
T Consensus 623 EVg~RfCpsCG~~t 636 (1121)
T PRK04023 623 EIGRRKCPSCGKET 636 (1121)
T ss_pred cccCccCCCCCCcC
Confidence 34456788888764
No 396
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=28.41 E-value=24 Score=30.60 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=23.3
Q ss_pred cccccccCCCCCCCCCCCCCCcccccccCcceeeCCCCcc
Q 048108 135 NKVKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRA 174 (193)
Q Consensus 135 ~~~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 174 (193)
++..|+.||.|+... |...+.....+||.|..+
T Consensus 34 p~~lw~kc~~C~~~~-------~~~~l~~~~~vcp~c~~h 66 (296)
T CHL00174 34 YKHLWVQCENCYGLN-------YKKFLKSKMNICEQCGYH 66 (296)
T ss_pred CCCCeeECCCccchh-------hHHHHHHcCCCCCCCCCC
Confidence 566799999999887 455555555677766543
No 397
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.39 E-value=1.7e+02 Score=24.10 Aligned_cols=41 Identities=12% Similarity=0.004 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHH
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFT 54 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~ 54 (193)
+....-++..++.-||-++|+.-|.+|+..++++. .++++.
T Consensus 159 ~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~-~~~~lq 199 (207)
T COG2976 159 AIVAELRGDILLAKGDKQEARAAYEKALESDASPA-AREILQ 199 (207)
T ss_pred HHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH-HHHHHH
Confidence 34455677778888888888888888888876553 455443
No 398
>smart00208 TNFR Tumor necrosis factor receptor / nerve growth factor receptor repeats. Repeats in growth factor receptors that are involved in growth factor binding. TNF/TNFR
Probab=28.09 E-value=54 Score=18.69 Aligned_cols=16 Identities=19% Similarity=0.495 Sum_probs=10.3
Q ss_pred ccCccCCCcceEecccC
Q 048108 177 IFCQCQGRRKIVILRNC 193 (193)
Q Consensus 177 ~~C~~C~~~~~v~~~~c 193 (193)
..|..|.. |.+++.+|
T Consensus 16 ~~C~~C~~-g~~~~~~C 31 (39)
T smart00208 16 LRCRRCPP-GLVVKQPC 31 (39)
T ss_pred ccCCCCCC-CCEEecCC
Confidence 44566665 77777666
No 399
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=27.97 E-value=94 Score=22.23 Aligned_cols=39 Identities=18% Similarity=-0.078 Sum_probs=30.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNP 44 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p 44 (193)
+-++-.+|.-+.-.|-...+.|||+.|...+..|....-
T Consensus 8 iI~~aG~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~~l~ 46 (97)
T cd00215 8 IILHAGNARSKALEALKAAKEGDFAEAEELLEEANDSLN 46 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 334556777888888889999999999999998876443
No 400
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=27.92 E-value=59 Score=31.76 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=27.4
Q ss_pred ccCCCCCCCCCCCCCCccccccc-CcceeeCCCCcc--ccccCccCCCcceE
Q 048108 140 MSCSCCRPQGAGDNNSPRASTYK-ANNTSCPRKYRA--KAIFCQCQGRRKIV 188 (193)
Q Consensus 140 ~~c~~c~~~~~~~~~~~~~~~~~-~~~~~c~~~~~~--~~~~C~~C~~~~~v 188 (193)
..|..|+...+=...+.++.... ...+.|..|... .+..|+.||+.-.+
T Consensus 436 l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~ 487 (730)
T COG1198 436 LLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLR 487 (730)
T ss_pred eecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeE
Confidence 34555554444333333322211 145788777654 66899999998443
No 401
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=27.86 E-value=25 Score=23.14 Aligned_cols=8 Identities=25% Similarity=0.235 Sum_probs=3.9
Q ss_pred ccCccCCC
Q 048108 177 IFCQCQGR 184 (193)
Q Consensus 177 ~~C~~C~~ 184 (193)
.-|+.||=
T Consensus 51 Y~Cp~CGF 58 (61)
T COG2888 51 YRCPKCGF 58 (61)
T ss_pred eECCCcCc
Confidence 44555553
No 402
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=27.75 E-value=2.9e+02 Score=28.37 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 048108 14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTA 55 (193)
Q Consensus 14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~ 55 (193)
.-++.-|...+...+|+.|++...++...+|+.-.+.-++-+
T Consensus 3 K~aLK~Ak~al~nk~YeealEqskkvLk~dpdNYnA~vFLGv 44 (1238)
T KOG1127|consen 3 KTALKSAKDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGV 44 (1238)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHH
Confidence 457788999999999999999999999999998654444433
No 403
>PF00020 TNFR_c6: TNFR/NGFR cysteine-rich region; InterPro: IPR001368 A number of proteins, some of which are known to be receptors for growth factors have been found to contain a cysteine-rich domain at the N-terminal region that can be subdivided into four (or in some cases, three) repeats containing six conserved cysteines all of which are involved in intrachain disulphide bonds []. CD27 (also called S152 or T14) mediates a co-stimulatory signal for T and B cell activation and is involved in murine T cell development. Tyrosine-phosphorylation of ZAP-70 following CD27 ligation of T cells has been reported [], but not confirmed independently. CD30 was originally identified as Ki-1, an antigen expressed on Reed-Sternberg cells in Hodgkin's lymphomas and other non-Hodgkin's lymphomas, particularly diffuse large-cell lymphoma and immunoblastic lymphoma. CD30 has pleiotropic effects on CD30-positive lymphoma cell lines ranging from cell proliferation to cell death. It is thought to be involved in negative selection of T-cells in the thymus and is involved in TCR-mediated cell death. CD30 is a member of the TNFR family of molecules, activate NFkB through interaction with TRAF2 and TRAF5. CD40 (Bp50) plays a central role in the regulation of cell-mediated immunity as well as antibody mediated immunity. It is central to T cell dependent (TD)-responses and may influence survival of B cell lymphomas. CD95 (also called APO-1, fas antigen, Fas tumour necrosis factor receptor superfamily, member 6, TNFRSF6 or apoptosis antigen 1, APT1) is expressed, typically at high levels, on activated T and B cells. It is involved in the mediation of apoptosis-inducing signals. Other proteins known to belong to this family [, , , ] are, tumour Necrosis Factor type I and type II receptors (TNFR), Rabbit fibroma virus soluble TNF receptor (protein T2), lymphotoxin alpha/beta receptor, low-affinity nerve growth factor receptor (LA-NGFR) (p75), T-cell antigen OX40, Wsl-1, a receptor (for a yet undefined ligand) that mediates apoptosis and Vaccinia virus protein A53 (SalF19R). CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/).; GO: 0005488 binding; PDB: 3TJE_F 3QD6_S 3ALQ_U 3IJ2_Y 3BUK_D 1SG1_X 1NCF_B 1EXT_A 1FT4_B 1TNR_R ....
Probab=27.75 E-value=41 Score=19.45 Aligned_cols=16 Identities=13% Similarity=0.345 Sum_probs=9.3
Q ss_pred ccCccCCCcceEecccC
Q 048108 177 IFCQCQGRRKIVILRNC 193 (193)
Q Consensus 177 ~~C~~C~~~~~v~~~~c 193 (193)
..|..|.. |.+++.+|
T Consensus 16 ~~C~~C~~-g~~~~~~C 31 (39)
T PF00020_consen 16 LPCSRCPP-GQYVVQPC 31 (39)
T ss_dssp EEEESBTT-TEEEEE--
T ss_pred CccCCcCc-CCEEecCC
Confidence 45566666 77777766
No 404
>KOG2518 consensus 5'-3' exonuclease [Replication, recombination and repair]
Probab=27.58 E-value=1.1e+02 Score=28.71 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACR 57 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~ 57 (193)
+.-.+-+++|+.+++.|+...|+.+++++..+.|.. +..++..++
T Consensus 94 ~~R~~n~~~a~~ll~~G~~~~A~~~fqr~VdIT~~m--a~~lI~~~r 138 (556)
T KOG2518|consen 94 ERRKKNLDAAEQLLAEGKESNARECFQRCVDITPEM--AHKLIQYLR 138 (556)
T ss_pred HHHHHhHHHHHHHHHcCCHHHHHHHHHHhccCcHHH--HHHHHHHHH
Confidence 445677889999999999999999999999999886 466666665
No 405
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=27.54 E-value=26 Score=27.28 Aligned_cols=31 Identities=10% Similarity=0.067 Sum_probs=21.5
Q ss_pred cccccCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCCc
Q 048108 137 VKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRR 185 (193)
Q Consensus 137 ~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~~ 185 (193)
.-...||.|+..+. |..... --..||.||+.
T Consensus 107 ~~~Y~Cp~c~~r~t------f~eA~~------------~~F~Cp~Cg~~ 137 (158)
T TIGR00373 107 NMFFICPNMCVRFT------FNEAME------------LNFTCPRCGAM 137 (158)
T ss_pred CCeEECCCCCcEee------HHHHHH------------cCCcCCCCCCE
Confidence 34568999999887 665553 14678888764
No 406
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=27.51 E-value=48 Score=25.10 Aligned_cols=13 Identities=15% Similarity=0.570 Sum_probs=9.3
Q ss_pred ccccCCCCCCCCC
Q 048108 138 KLMSCSCCRPQGA 150 (193)
Q Consensus 138 f~~~c~~c~~~~~ 150 (193)
-...|+.|+..+.
T Consensus 69 ~~~~C~~CG~~~~ 81 (135)
T PRK03824 69 AVLKCRNCGNEWS 81 (135)
T ss_pred eEEECCCCCCEEe
Confidence 3457999987765
No 407
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=27.45 E-value=37 Score=32.97 Aligned_cols=62 Identities=23% Similarity=0.416 Sum_probs=37.7
Q ss_pred HcCCCchhhhhhhhhhhcccccccCCCCCCCCCCCCCCccccc--ccCcceeeCC-----------CCccccccCccCCC
Q 048108 118 VLTDPGKRKAFDNRIRLNKVKLMSCSCCRPQGAGDNNSPRAST--YKANNTSCPR-----------KYRAKAIFCQCQGR 184 (193)
Q Consensus 118 vLsd~~~R~~YD~~~~~~~~f~~~c~~c~~~~~~~~~~~~~~~--~~~~~~~c~~-----------~~~~~~~~C~~C~~ 184 (193)
-|-||..|+.. --.+.|..|+..+..-..=||.+. ....+..|+. .+.+....|+.||=
T Consensus 77 E~~dp~~Rry~--------YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C~~Cgp 148 (711)
T TIGR00143 77 EMLDKNDRRYL--------YPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIACPRCGP 148 (711)
T ss_pred HhcCCCccccc--------CCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccCCCCCc
Confidence 46788877752 223679999988854333233332 2233445543 55677899999986
Q ss_pred cce
Q 048108 185 RKI 187 (193)
Q Consensus 185 ~~~ 187 (193)
+-.
T Consensus 149 ~l~ 151 (711)
T TIGR00143 149 QLN 151 (711)
T ss_pred EEE
Confidence 643
No 408
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=27.43 E-value=20 Score=26.22 Aligned_cols=14 Identities=14% Similarity=0.209 Sum_probs=8.2
Q ss_pred cccccCCCCCCCCC
Q 048108 137 VKLMSCSCCRPQGA 150 (193)
Q Consensus 137 ~f~~~c~~c~~~~~ 150 (193)
.....|..|+..+.
T Consensus 68 p~~~~C~~Cg~~~~ 81 (113)
T PF01155_consen 68 PARARCRDCGHEFE 81 (113)
T ss_dssp --EEEETTTS-EEE
T ss_pred CCcEECCCCCCEEe
Confidence 33457888888875
No 409
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=27.42 E-value=1.1e+02 Score=25.85 Aligned_cols=8 Identities=13% Similarity=0.443 Sum_probs=5.5
Q ss_pred cccCccCC
Q 048108 176 AIFCQCQG 183 (193)
Q Consensus 176 ~~~C~~C~ 183 (193)
..||+.|-
T Consensus 264 t~~CP~CQ 271 (272)
T PRK14810 264 SHYCPHCQ 271 (272)
T ss_pred cEECcCCc
Confidence 37888773
No 410
>PRK05978 hypothetical protein; Provisional
Probab=27.40 E-value=34 Score=26.55 Aligned_cols=15 Identities=13% Similarity=0.208 Sum_probs=10.9
Q ss_pred ccccccCCCCCCCCC
Q 048108 136 KVKLMSCSCCRPQGA 150 (193)
Q Consensus 136 ~~f~~~c~~c~~~~~ 150 (193)
-.+...||.|+.+.-
T Consensus 30 rGl~grCP~CG~G~L 44 (148)
T PRK05978 30 RGFRGRCPACGEGKL 44 (148)
T ss_pred HHHcCcCCCCCCCcc
Confidence 344568999988874
No 411
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=27.36 E-value=4.5e+02 Score=23.50 Aligned_cols=81 Identities=9% Similarity=0.062 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhcccccchhh-------hhcCCCCCCCHHHH
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL-PNIDDYFTACRVHQLSETKSTLYK-------ILAITDPQVDISVI 84 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~-~~i~~~l~~~~~~~~~~~~~d~Y~-------vLgv~~~~a~~~~I 84 (193)
...+..+|..++.+|=++.|-..+........-- +..++++...+.- ++|-+ +..+ .+.-..-+|
T Consensus 107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~t------reW~KAId~A~~L~k~-~~q~~~~eI 179 (389)
T COG2956 107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQAT------REWEKAIDVAERLVKL-GGQTYRVEI 179 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHc-CCccchhHH
Confidence 4455566666667776666666666655422222 2233344333321 33332 2233 444455567
Q ss_pred HHHHHHHHHhcCCCCC
Q 048108 85 KKQFKKMALMLHPDKN 100 (193)
Q Consensus 85 k~aYr~l~~~~HPDk~ 100 (193)
-.=|-.|+...-++.+
T Consensus 180 AqfyCELAq~~~~~~~ 195 (389)
T COG2956 180 AQFYCELAQQALASSD 195 (389)
T ss_pred HHHHHHHHHHHhhhhh
Confidence 7777777766665544
No 412
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=27.26 E-value=60 Score=20.25 Aligned_cols=11 Identities=18% Similarity=0.576 Sum_probs=8.5
Q ss_pred ccCCCCCCCCC
Q 048108 140 MSCSCCRPQGA 150 (193)
Q Consensus 140 ~~c~~c~~~~~ 150 (193)
..||+|++.-.
T Consensus 2 kPCPfCGg~~~ 12 (53)
T TIGR03655 2 KPCPFCGGADV 12 (53)
T ss_pred CCCCCCCCcce
Confidence 46999988765
No 413
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=27.10 E-value=1.5e+02 Score=27.71 Aligned_cols=41 Identities=29% Similarity=0.239 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDD 51 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~ 51 (193)
..|+.+..+|..|-.++|...|+.++.++..+-|+++.|-.
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ils 596 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILS 596 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHH
Confidence 34667788999999999999999999999999999875433
No 414
>KOG1105 consensus Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1 [Transcription]
Probab=26.95 E-value=1.1e+02 Score=26.63 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=18.6
Q ss_pred chhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCC
Q 048108 67 TLYKILAITDPQVDISVIKKQFKKMALMLHPDKN 100 (193)
Q Consensus 67 d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~ 100 (193)
..|+.+|. +....|..||-....+---+|
T Consensus 170 ~~~~~~g~-----~~~kyK~r~RS~~~NLkd~~N 198 (296)
T KOG1105|consen 170 AIFEKLGN-----TDSKYKNRYRSRVSNLKDKNN 198 (296)
T ss_pred HHHHHhCC-----CcHHHHHHHHHHhhccCCCCC
Confidence 34556666 667888889888665543333
No 415
>PF09272 Hepsin-SRCR: Hepsin, SRCR; InterPro: IPR015352 This entry represents the extracellular domain of the serine protease hepsin. The domain is formed primarily by three elements of regular secondary structure: a 12-residue alpha helix, a twisted five-stranded antiparallel beta sheet, and a second, two-stranded, antiparallel sheet. The two beta-sheets lie at roughly right angles to each other, with the helix nestled between the two, adopting an SRCR fold. The exact function of this domain has not been identified, though it probably may serve to orient the protease domain or place it in the vicinity of its substrate []. ; GO: 0004252 serine-type endopeptidase activity, 0070008 serine-type exopeptidase activity; PDB: 3T2N_B 1Z8G_A 1P57_A 1O5E_L 1O5F_L.
Probab=26.63 E-value=30 Score=25.36 Aligned_cols=28 Identities=32% Similarity=0.357 Sum_probs=11.9
Q ss_pred ccccCcceeeCCCC-ccccccCccCCCcc
Q 048108 159 STYKANNTSCPRKY-RAKAIFCQCQGRRK 186 (193)
Q Consensus 159 ~~~~~~~~~c~~~~-~~~~~~C~~C~~~~ 186 (193)
+.......+|.... +.-+..||.||+|+
T Consensus 80 ~~L~~v~~vCdCp~G~fLat~CQDCGRRk 108 (110)
T PF09272_consen 80 RRLLEVLSVCDCPRGRFLATICQDCGRRK 108 (110)
T ss_dssp S-GGGGEEEE--TT-EEEEEEE---S---
T ss_pred HhhhhheeeeeCCCCceeehhhhhhCccc
Confidence 44455555665533 55679999999986
No 416
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=26.51 E-value=47 Score=29.30 Aligned_cols=12 Identities=8% Similarity=0.235 Sum_probs=6.5
Q ss_pred ccCccCCCcceE
Q 048108 177 IFCQCQGRRKIV 188 (193)
Q Consensus 177 ~~C~~C~~~~~v 188 (193)
+.|..|.|.|.+
T Consensus 171 ~~C~~C~G~G~~ 182 (337)
T KOG0712|consen 171 LVCDSCNGSGET 182 (337)
T ss_pred eEeccCCCcccc
Confidence 445555555554
No 417
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=26.46 E-value=1.2e+02 Score=29.21 Aligned_cols=86 Identities=20% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccccchhhhhcCCCCC---CCHHHHHHHHHHHHHhc
Q 048108 19 AAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQ---VDISVIKKQFKKMALML 95 (193)
Q Consensus 19 ~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~---a~~~~Ik~aYr~l~~~~ 95 (193)
.|.-++..+++++|...+......+|+. -+||+.|.. ... .+.+-++..|..++.++
T Consensus 225 ka~l~~kl~~lEeA~~~y~~Ll~rnPdn-------------------~~Yy~~l~~-~lgk~~d~~~~lk~ly~~ls~~y 284 (700)
T KOG1156|consen 225 KADLLMKLGQLEEAVKVYRRLLERNPDN-------------------LDYYEGLEK-ALGKIKDMLEALKALYAILSEKY 284 (700)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHhhCchh-------------------HHHHHHHHH-HHHHHhhhHHHHHHHHHHHhhcC
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 96 HPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 96 HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
----.+ +.-...+|.+.+.+..+|..+.+
T Consensus 285 ~r~e~p----------~Rlplsvl~~eel~~~vdkyL~~ 313 (700)
T KOG1156|consen 285 PRHECP----------RRLPLSVLNGEELKEIVDKYLRP 313 (700)
T ss_pred cccccc----------hhccHHHhCcchhHHHHHHHHHH
No 418
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=26.42 E-value=4.4e+02 Score=23.62 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=38.8
Q ss_pred ccCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHH
Q 048108 6 KNLVKL-AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYF 53 (193)
Q Consensus 6 ~e~~~~-ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l 53 (193)
.|+.++ .|+-..+-+..+|+..+|..|+..|.+.....-.+++|...|
T Consensus 73 ~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavL 121 (390)
T KOG0551|consen 73 EEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVL 121 (390)
T ss_pred ccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHH
Confidence 455554 489999999999999999999999999998777666655444
No 419
>PLN02789 farnesyltranstransferase
Probab=26.41 E-value=1e+02 Score=26.69 Aligned_cols=41 Identities=12% Similarity=-0.079 Sum_probs=29.9
Q ss_pred cCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCc
Q 048108 7 NLVKLAAEKARDAAEEYFKLQ-NIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~-d~~~A~~~~~~a~~l~p~~~ 47 (193)
+.|++....+..++..+...+ ++.+|+.++.++...+|...
T Consensus 65 ~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny 106 (320)
T PLN02789 65 RLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY 106 (320)
T ss_pred HHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch
Confidence 445666667777777777777 57888888888888888753
No 420
>PRK14102 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=26.37 E-value=2.3e+02 Score=20.71 Aligned_cols=72 Identities=11% Similarity=0.092 Sum_probs=38.3
Q ss_pred HHHHHHHHhhcccccchhhhhcCCCCCC-----CHHHHHHHHHHHHHhcCCCCCCC--chHHHH-HHHHHHHHHHc--CC
Q 048108 52 YFTACRVHQLSETKSTLYKILAITDPQV-----DISVIKKQFKKMALMLHPDKNSS--VAADGA-FKLIRSANNVL--TD 121 (193)
Q Consensus 52 ~l~~~~~~~~~~~~~d~Y~vLgv~~~~a-----~~~~Ik~aYr~l~~~~HPDk~~~--~~a~~~-f~~i~~Ay~vL--sd 121 (193)
.++.++.+.++ .||++.||| +.+. +.=-|-+.|.+.....+.+.... .+.... =..+.+||+.. |+
T Consensus 4 ~l~~l~~LssA---EdFf~ff~v-~YDp~vvnV~RLHILkrf~qyl~~~~~~~~~~~e~~~~~~yr~~L~~AY~dF~~St 79 (105)
T PRK14102 4 TLKEFKKLVDA---EDYFQFFEL-PYDPTVVNVNRLHILKQFSQLIAEIDANFPDLSEEEKLEKYQLALEEAYQVFLTST 79 (105)
T ss_pred HHHHHHHhccH---HHHHHHhCC-CCCcchhhHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 34445555444 499999999 4433 33447777777766544332221 111122 23567788743 44
Q ss_pred Cchhhh
Q 048108 122 PGKRKA 127 (193)
Q Consensus 122 ~~~R~~ 127 (193)
|..-+.
T Consensus 80 p~~ekv 85 (105)
T PRK14102 80 PLEQKL 85 (105)
T ss_pred hhhhhh
Confidence 444333
No 421
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=26.30 E-value=45 Score=25.29 Aligned_cols=11 Identities=9% Similarity=-0.009 Sum_probs=7.8
Q ss_pred ccCCCCCCCCC
Q 048108 140 MSCSCCRPQGA 150 (193)
Q Consensus 140 ~~c~~c~~~~~ 150 (193)
..||.|+..|.
T Consensus 10 r~Cp~cg~kFY 20 (129)
T TIGR02300 10 RICPNTGSKFY 20 (129)
T ss_pred ccCCCcCcccc
Confidence 46778877775
No 422
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=26.27 E-value=82 Score=20.30 Aligned_cols=12 Identities=17% Similarity=0.603 Sum_probs=9.5
Q ss_pred ccccCCCCCCCC
Q 048108 138 KLMSCSCCRPQG 149 (193)
Q Consensus 138 f~~~c~~c~~~~ 149 (193)
-|..||.|+..-
T Consensus 3 ~Wi~CP~CgnKT 14 (55)
T PF14205_consen 3 EWILCPICGNKT 14 (55)
T ss_pred eEEECCCCCCcc
Confidence 588899998765
No 423
>PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function.
Probab=26.13 E-value=56 Score=19.81 Aligned_cols=22 Identities=23% Similarity=0.099 Sum_probs=13.6
Q ss_pred CCHHHHHHHHHHHHHHHHcCCH
Q 048108 8 LVKLAAEKARDAAEEYFKLQNI 29 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~ 29 (193)
+|..||..++..|..++..-++
T Consensus 19 ~~~~EA~~A~~kAq~Lm~ky~i 40 (43)
T PF10979_consen 19 SNEHEAEAALAKAQRLMAKYGI 40 (43)
T ss_pred CCHHHHHHHHHHHHHHHHHhCC
Confidence 5556677777776666655443
No 424
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=25.98 E-value=74 Score=17.51 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHHhcCC
Q 048108 80 DISVIKKQFKKMALMLHP 97 (193)
Q Consensus 80 ~~~~Ik~aYr~l~~~~HP 97 (193)
..++.+.+-|+.++.||-
T Consensus 9 ~~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYHE 26 (28)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 357889999999999983
No 425
>PF12773 DZR: Double zinc ribbon
Probab=25.80 E-value=52 Score=19.91 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=6.4
Q ss_pred cccCCCCCCCCC
Q 048108 139 LMSCSCCRPQGA 150 (193)
Q Consensus 139 ~~~c~~c~~~~~ 150 (193)
..+|+.|+..-.
T Consensus 12 ~~fC~~CG~~l~ 23 (50)
T PF12773_consen 12 AKFCPHCGTPLP 23 (50)
T ss_pred ccCChhhcCChh
Confidence 345666655543
No 426
>PRK00539 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=25.65 E-value=1.7e+02 Score=22.01 Aligned_cols=22 Identities=18% Similarity=0.048 Sum_probs=18.5
Q ss_pred ccCCHHHHHHHHHHHHHHHHcC
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQ 27 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~ 27 (193)
-|.|.++|++.+++|+..++..
T Consensus 87 eeID~~~a~~a~erAe~~L~~~ 108 (133)
T PRK00539 87 DELDYDETLKRKKELERKIKHT 108 (133)
T ss_pred hhCCHHHHHHHHHHHHHHHHhC
Confidence 4678899999999999999753
No 427
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=25.13 E-value=30 Score=29.73 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=22.8
Q ss_pred hcccccccCCCCCCCCCCCCCCcccccccCcceeeCCCCcc
Q 048108 134 LNKVKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRA 174 (193)
Q Consensus 134 ~~~~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 174 (193)
.++..|+.||.|+..- |...+.....+||.|..+
T Consensus 21 ~~~~~~~~c~~c~~~~-------~~~~l~~~~~vc~~c~~h 54 (285)
T TIGR00515 21 VPEGVWTKCPKCGQVL-------YTKELERNLEVCPKCDHH 54 (285)
T ss_pred CCCCCeeECCCCcchh-------hHHHHHhhCCCCCCCCCc
Confidence 3566799999999877 344444445677766543
No 428
>PLN02789 farnesyltranstransferase
Probab=24.75 E-value=1.1e+02 Score=26.48 Aligned_cols=39 Identities=5% Similarity=-0.223 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
|+.....+..++-.....|++++|+.++.++.+.+|...
T Consensus 138 dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~ 176 (320)
T PLN02789 138 DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN 176 (320)
T ss_pred CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch
Confidence 344455566666667777778888888888888877753
No 429
>PRK13452 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=24.71 E-value=1.8e+02 Score=22.25 Aligned_cols=21 Identities=48% Similarity=0.490 Sum_probs=18.1
Q ss_pred ccCCHHHHHHHHHHHHHHHHc
Q 048108 6 KNLVKLAAEKARDAAEEYFKL 26 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~ 26 (193)
.|.|.++|++.+++|+..++.
T Consensus 88 ~eID~~~ae~a~~~Ae~~L~~ 108 (145)
T PRK13452 88 ENLNQAEAEKARARAKEVLKN 108 (145)
T ss_pred ccCCHHHHHHHHHHHHHHHHh
Confidence 467889999999999999865
No 430
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=24.54 E-value=1.4e+02 Score=19.67 Aligned_cols=45 Identities=7% Similarity=-0.083 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108 85 KKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIR 133 (193)
Q Consensus 85 k~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 133 (193)
.+.++..++.-||+.. ..+..+.|.+.|..|++.++....+....
T Consensus 13 ~~~~r~~~~~~~p~~~----~~eisk~~g~~Wk~ls~eeK~~y~~~A~~ 57 (77)
T cd01389 13 RQDKHAQLKTENPGLT----NNEISRIIGRMWRSESPEVKAYYKELAEE 57 (77)
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 4556777778889753 45788899999999998776655554443
No 431
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=24.54 E-value=48 Score=19.21 Aligned_cols=11 Identities=18% Similarity=0.694 Sum_probs=8.9
Q ss_pred ccCCCCCCCCC
Q 048108 140 MSCSCCRPQGA 150 (193)
Q Consensus 140 ~~c~~c~~~~~ 150 (193)
+.||.|...+.
T Consensus 3 i~CP~C~~~f~ 13 (37)
T PF13719_consen 3 ITCPNCQTRFR 13 (37)
T ss_pred EECCCCCceEE
Confidence 47888888886
No 432
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=24.52 E-value=1e+02 Score=31.39 Aligned_cols=39 Identities=15% Similarity=0.018 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
++.+-+.|+.+++.|..+|.+..|++.+.||..++|..-
T Consensus 592 dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 592 DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 466778899999999999999999999999999999863
No 433
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=24.31 E-value=32 Score=27.39 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=20.5
Q ss_pred ccccCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCCc
Q 048108 138 KLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRR 185 (193)
Q Consensus 138 f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~~ 185 (193)
-...||.|+..+. |..... --..||.||+.
T Consensus 116 ~~Y~Cp~C~~ryt------f~eA~~------------~~F~Cp~Cg~~ 145 (178)
T PRK06266 116 MFFFCPNCHIRFT------FDEAME------------YGFRCPQCGEM 145 (178)
T ss_pred CEEECCCCCcEEe------HHHHhh------------cCCcCCCCCCC
Confidence 3468999999887 655542 24677888763
No 434
>PRK11906 transcriptional regulator; Provisional
Probab=24.31 E-value=1.5e+02 Score=27.42 Aligned_cols=40 Identities=15% Similarity=0.010 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
.|++.|..+.-.|-.++-+|+.++|+..+++|.+++|...
T Consensus 367 L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 367 HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 3444455555555555556666666666666666666553
No 435
>PRK05580 primosome assembly protein PriA; Validated
Probab=24.20 E-value=75 Score=30.55 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=18.9
Q ss_pred CcceeeCCCCccc--cccCccCCCcce
Q 048108 163 ANNTSCPRKYRAK--AIFCQCQGRRKI 187 (193)
Q Consensus 163 ~~~~~c~~~~~~~--~~~C~~C~~~~~ 187 (193)
...+.|..|.... ...|+.||+...
T Consensus 406 ~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l 432 (679)
T PRK05580 406 QRRLRCHHCGYQEPIPKACPECGSTDL 432 (679)
T ss_pred CCeEECCCCcCCCCCCCCCCCCcCCee
Confidence 4568898888665 468999998754
No 436
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=24.09 E-value=1.7e+02 Score=22.80 Aligned_cols=31 Identities=19% Similarity=0.064 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 16 ARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 16 ~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
..+.+..+...|+.++|.+...++..++|..
T Consensus 147 ~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 147 YQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 3456888889999999999999999999933
No 437
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.04 E-value=1.6e+02 Score=25.34 Aligned_cols=63 Identities=19% Similarity=0.329 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHh----hcccccchhhhhcCCCCCC
Q 048108 14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQ----LSETKSTLYKILAITDPQV 79 (193)
Q Consensus 14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~----~~~~~~d~Y~vLgv~~~~a 79 (193)
--+++-+.+++..|||-+++..-....+.+|.. +..+...+..+. ..+.+.|+-.+|.+ +|..
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~n--vKA~frRakAhaa~Wn~~eA~~D~~~vL~l-dpsl 297 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGN--VKAYFRRAKAHAAVWNEAEAKADLQKVLEL-DPSL 297 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCch--HHHHHHHHHHHHhhcCHHHHHHHHHHHHhc-Chhh
Confidence 357788999999999999999999999999987 455555554433 23455788888888 6544
No 438
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=23.87 E-value=4.3e+02 Score=21.98 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=11.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Q 048108 19 AAEEYFKLQNIDMAIKTLKAAKEFN 43 (193)
Q Consensus 19 ~A~~~~~~~d~~~A~~~~~~a~~l~ 43 (193)
.|...+...++..|+..+.+|..++
T Consensus 80 ~Aa~~~k~~~~~~Ai~~~~~A~~~y 104 (282)
T PF14938_consen 80 EAANCYKKGDPDEAIECYEKAIEIY 104 (282)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 3333333334444444444444443
No 439
>PF15616 TerY-C: TerY-C metal binding domain
Probab=23.74 E-value=89 Score=23.77 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=24.6
Q ss_pred ccCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCCcceE
Q 048108 140 MSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRRKIV 188 (193)
Q Consensus 140 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~~~~v 188 (193)
-.||+|+..+. |--- ..-.+.|- ....-+.||-|+..|.+
T Consensus 78 PgCP~CGn~~~------fa~C-~CGkl~Ci--~g~~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 78 PGCPHCGNQYA------FAVC-GCGKLFCI--DGEGEVTCPWCGNEGSF 117 (131)
T ss_pred CCCCCCcChhc------EEEe-cCCCEEEe--CCCCCEECCCCCCeeee
Confidence 47999999976 2111 11112332 23457999999988765
No 440
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=23.66 E-value=97 Score=27.60 Aligned_cols=91 Identities=12% Similarity=0.153 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHHHHHHHHHhc-CCCCCCCch-------------------------
Q 048108 51 DYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALML-HPDKNSSVA------------------------- 104 (193)
Q Consensus 51 ~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~-HPDk~~~~~------------------------- 104 (193)
.|++.+-.+..--...+|++|.=- -+..+....-.+||.|+.+. .|=+-+-.+
T Consensus 157 amveSAl~~~~~le~~~f~~iviS-~KsS~v~~~i~ayrlla~~~dyPLHlGvTEAG~~~~G~iKSa~gig~LL~~GIGD 235 (360)
T PRK00366 157 ALVESALRHAKILEELGFDDIKIS-VKASDVQDLIAAYRLLAKRCDYPLHLGVTEAGMGFKGTVKSAAGLGALLQEGIGD 235 (360)
T ss_pred HHHHHHHHHHHHHHHCCCCcEEEE-EEcCCHHHHHHHHHHHHhcCCCCceecccCCCCCCCceehhHHHHHHHHHhcCCC
Confidence 344444333333334566554322 34556777888999999876 232221000
Q ss_pred ------HHHHHHHHHHHHHHcCCCchhhhhhhhhhhcccccccCCCCCCCCC
Q 048108 105 ------ADGAFKLIRSANNVLTDPGKRKAFDNRIRLNKVKLMSCSCCRPQGA 150 (193)
Q Consensus 105 ------a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~~~~f~~~c~~c~~~~~ 150 (193)
..+--.+|.-||++|..=..|. ......+||.|+....
T Consensus 236 TiRVSLt~~P~~EV~va~~IL~slglr~--------~g~~IisCPgCgR~~~ 279 (360)
T PRK00366 236 TIRVSLTADPVEEVKVGQEILQSLGLRS--------RGPEVISCPTCGRTEF 279 (360)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCcc--------CCCeEEECCCCCCCcc
Confidence 0112567888888887554433 3566789999987764
No 441
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=23.57 E-value=3e+02 Score=28.08 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccccchhhhhcCCCC--CCCHHHHHHHHHHHH
Q 048108 32 AIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDP--QVDISVIKKQFKKMA 92 (193)
Q Consensus 32 A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~--~a~~~~Ik~aYr~l~ 92 (193)
-+.||+.+.+ .+++.++..+++.++..+... .-|.=|+.+.. +.+..-...+|++|-
T Consensus 906 PlEFYeat~~-~~~P~ev~~~i~~ve~rLgt~---~qy~g~~fTHdTsdI~~Gp~~s~YktLg 964 (1095)
T TIGR00354 906 PLEFYEATMR-FPSPKEVEDYVEKVEDRLGKP---EQYCGLFFTHDTSRIDAGPKVCAYKSLK 964 (1095)
T ss_pred CHHHHHHHhc-cCCHHHHHHHHHHHHHhcCCc---hhccccccccCcchhhcCcchhhhhhhh
Confidence 4677887777 455556888888887766543 34555555211 112222456666653
No 442
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=23.38 E-value=60 Score=25.03 Aligned_cols=14 Identities=14% Similarity=0.076 Sum_probs=7.5
Q ss_pred ccCccCCCcceEec
Q 048108 177 IFCQCQGRRKIVIL 190 (193)
Q Consensus 177 ~~C~~C~~~~~v~~ 190 (193)
+.|..|+|...|+.
T Consensus 111 v~C~~C~Gs~k~~~ 124 (147)
T cd03031 111 VPCSECNGSCKVFA 124 (147)
T ss_pred EECCCCCCcceEEe
Confidence 55555555555543
No 443
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=23.29 E-value=1.2e+02 Score=15.56 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=19.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 19 AAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 19 ~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
+-..+.+.|++++|.+.+.+..+.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHc
Confidence 445688899999999999887664
No 444
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=23.25 E-value=33 Score=29.54 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=21.6
Q ss_pred hcccccccCCCCCCCCCCCCCCcccccccCcceeeCCCCc
Q 048108 134 LNKVKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYR 173 (193)
Q Consensus 134 ~~~~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 173 (193)
.++..|+.||.|+... |...+.....+||.|..
T Consensus 22 ~~~~~~~~c~~c~~~~-------~~~~l~~~~~vc~~c~~ 54 (292)
T PRK05654 22 VPEGLWTKCPSCGQVL-------YRKELEANLNVCPKCGH 54 (292)
T ss_pred CCCCCeeECCCccchh-------hHHHHHhcCCCCCCCCC
Confidence 3566799999999876 44444444456665543
No 445
>KOG2684 consensus Sirtuin 5 and related class III sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=23.16 E-value=2.5e+02 Score=25.53 Aligned_cols=58 Identities=26% Similarity=0.368 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchh-hhhhhhhhh----------------cccccccCCCCCCC
Q 048108 86 KQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKR-KAFDNRIRL----------------NKVKLMSCSCCRPQ 148 (193)
Q Consensus 86 ~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R-~~YD~~~~~----------------~~~f~~~c~~c~~~ 148 (193)
.-|++.++.++|-.+. +.+...|.. .|.+..++ +.|-+-.+. ...+...|..|+..
T Consensus 140 ~~F~~~a~~l~~~~~~-ps~~H~Fi~------~L~~~gkLlR~YTQNID~LE~~aGl~~~~lVq~HGSf~t~sCt~C~~k 212 (412)
T KOG2684|consen 140 SIFYRFARELKPPSNN-PSAFHEFIK------LLEKKGKLLRNYTQNIDGLERKAGLSTNKLVQCHGSFKTASCTKCGYK 212 (412)
T ss_pred HHHHHHHHHhcCCccC-CchHHHHHH------HHHhcCceeEEeecccchhhhccCCCcCceEEeccccceeeecccccc
Confidence 7899999999998776 444333332 23333332 345444333 33445678888887
Q ss_pred CC
Q 048108 149 GA 150 (193)
Q Consensus 149 ~~ 150 (193)
..
T Consensus 213 ~~ 214 (412)
T KOG2684|consen 213 KP 214 (412)
T ss_pred cC
Confidence 76
No 446
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=23.02 E-value=3.4e+02 Score=22.04 Aligned_cols=47 Identities=13% Similarity=-0.152 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTAC 56 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~ 56 (193)
.-+++.-+.-+|+-....|++++|++++.+....--... -..+++.+
T Consensus 161 ~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~-~~~l~~~A 207 (214)
T PF09986_consen 161 GMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK-EPKLKDMA 207 (214)
T ss_pred CchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC-cHHHHHHH
Confidence 346677777889999999999999999999887655543 23444444
No 447
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=22.96 E-value=1.3e+02 Score=21.78 Aligned_cols=36 Identities=19% Similarity=0.058 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNP 44 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p 44 (193)
+-.+|.-+.-.|-...+.|||++|...+..|....-
T Consensus 16 ~aG~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~~l~ 51 (104)
T PRK09591 16 HSGNARTEVHEAFAAMREGNFDLAEQKLNQSNEELL 51 (104)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 445677777788888899999999999998877543
No 448
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=22.80 E-value=46 Score=19.60 Aligned_cols=10 Identities=20% Similarity=0.378 Sum_probs=6.5
Q ss_pred ccccCccCCC
Q 048108 175 KAIFCQCQGR 184 (193)
Q Consensus 175 ~~~~C~~C~~ 184 (193)
..-.|+.|+|
T Consensus 18 ~id~C~~C~G 27 (41)
T PF13453_consen 18 EIDVCPSCGG 27 (41)
T ss_pred EEEECCCCCe
Confidence 3356777776
No 449
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=22.79 E-value=47 Score=24.46 Aligned_cols=28 Identities=7% Similarity=-0.062 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAA 39 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a 39 (193)
+|+..++ +..++++.|||++|..+.+..
T Consensus 38 ~E~v~lI-RlsSLmNrG~Yq~Al~l~~~~ 65 (115)
T TIGR02508 38 EEAVQLI-RLSSLMNRGDYQSALQLGNKL 65 (115)
T ss_pred HHHHHHH-HHHHHHccchHHHHHHhcCCC
Confidence 5666655 457899999999999998877
No 450
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=22.77 E-value=55 Score=33.88 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=24.1
Q ss_pred cccccccCCCCCCCCCCCCCCcccccccCcceeeCCCCcc------ccccCccCCCc
Q 048108 135 NKVKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRA------KAIFCQCQGRR 185 (193)
Q Consensus 135 ~~~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~------~~~~C~~C~~~ 185 (193)
..+++.+||.|+..-. ....|++|... .+..|+.|+..
T Consensus 675 ~~t~~~fCP~CGs~te-------------~vy~CPsCGaev~~des~a~~CP~CGtp 718 (1337)
T PRK14714 675 TETYENRCPDCGTHTE-------------PVYVCPDCGAEVPPDESGRVECPRCDVE 718 (1337)
T ss_pred CccccccCcccCCcCC-------------CceeCccCCCccCCCccccccCCCCCCc
Confidence 3456678999988753 11366665542 25689999854
No 451
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=22.55 E-value=53 Score=25.64 Aligned_cols=10 Identities=30% Similarity=0.816 Sum_probs=8.0
Q ss_pred ccCCCCCCCC
Q 048108 140 MSCSCCRPQG 149 (193)
Q Consensus 140 ~~c~~c~~~~ 149 (193)
+.||+|+.+.
T Consensus 1 m~cp~c~~~~ 10 (154)
T PRK00464 1 MRCPFCGHPD 10 (154)
T ss_pred CcCCCCCCCC
Confidence 3699999877
No 452
>PRK00810 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=22.54 E-value=3.3e+02 Score=20.17 Aligned_cols=77 Identities=12% Similarity=0.122 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhhcccccchhhhhcCCCCCC-----CHHHHHHHHHHHHHhcCCCCCCCchH-HHHHHHHHHHHHH--cC
Q 048108 49 IDDYFTACRVHQLSETKSTLYKILAITDPQV-----DISVIKKQFKKMALMLHPDKNSSVAA-DGAFKLIRSANNV--LT 120 (193)
Q Consensus 49 i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a-----~~~~Ik~aYr~l~~~~HPDk~~~~~a-~~~f~~i~~Ay~v--Ls 120 (193)
...+++.++.+.+.+ +|++.||| +.+. ..=.|-+.|.+....-.....+.... ...=..+.+||+. -|
T Consensus 5 ~~~~l~~l~~LssAE---dff~ff~V-~YDp~vvnV~RLHILKrF~~yL~~~~~~~~~e~~~~~~yr~aL~~AY~dF~~S 80 (113)
T PRK00810 5 MTDILDQLKRLSSAE---EFFQLLGV-PYDPKVVNVARLHILKRMGQYLAQEDFAGLPEAEARARCRAVLERAYADFVAS 80 (113)
T ss_pred hHHHHHHHHHcccHH---HHHHHhCC-CCCHHHHHHhHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHccC
Confidence 345555565555554 88888888 4433 33446666666655433111111111 1222356777773 35
Q ss_pred CCchhhhhh
Q 048108 121 DPGKRKAFD 129 (193)
Q Consensus 121 d~~~R~~YD 129 (193)
+|..-+.+=
T Consensus 81 tp~~ekvFK 89 (113)
T PRK00810 81 SPLDQRVFK 89 (113)
T ss_pred CHhHHHHHH
Confidence 555444443
No 453
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=22.50 E-value=1.4e+02 Score=21.95 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKA 38 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~ 38 (193)
....+.+|..++..|+++.|+..+..
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 56778899999999999999999965
No 454
>smart00770 Zn_dep_PLPC Zinc dependent phospholipase C (alpha toxin). This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.
Probab=22.28 E-value=2e+02 Score=24.19 Aligned_cols=35 Identities=23% Similarity=0.026 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNP 44 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p 44 (193)
+++..+..++|..+++.|+++.|..++..|.-+-.
T Consensus 111 ~~~~~ky~~~A~~~~~~g~~~~A~~~LG~a~Hy~~ 145 (241)
T smart00770 111 KDTGRKYFKLALNEWKKGNYKKAFFYLGRACHYLG 145 (241)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999987543
No 455
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=22.28 E-value=6.7e+02 Score=23.67 Aligned_cols=101 Identities=20% Similarity=0.174 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc--cHHHHHHHHHHHhh----cccccchhhhhcCCCCCCCHH--HHHHHH
Q 048108 17 RDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP--NIDDYFTACRVHQL----SETKSTLYKILAITDPQVDIS--VIKKQF 88 (193)
Q Consensus 17 ~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~--~i~~~l~~~~~~~~----~~~~~d~Y~vLgv~~~~a~~~--~Ik~aY 88 (193)
.+.|.+.-+.|..++|++.++...+.+|... +|+..|..+--.+. .+.-..=|+-..+ +++|+.- ..--.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~YTaALLka 341 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHHHHHHHHH
Confidence 4588899999999999999999999998643 34444433211110 0011222554555 5555421 112245
Q ss_pred HHHHHhcCCCCCC----CchHHHHHHHHHHHHHH
Q 048108 89 KKMALMLHPDKNS----SVAADGAFKLIRSANNV 118 (193)
Q Consensus 89 r~l~~~~HPDk~~----~~~a~~~f~~i~~Ay~v 118 (193)
|..+-++.|+-.. ++....+...|.+|++.
T Consensus 342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvef 375 (539)
T PF04184_consen 342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEF 375 (539)
T ss_pred HhhccccCchhhhhcCCChhHHHHHHHHHHHHHh
Confidence 5555556665322 22233445667777764
No 456
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=22.22 E-value=37 Score=29.24 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=24.2
Q ss_pred cccccccCCCCCCCCCCCCCCcccccccCcceeeCCCCcc
Q 048108 135 NKVKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRA 174 (193)
Q Consensus 135 ~~~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 174 (193)
++..|+.||.|+..- |.........+|+.|..+
T Consensus 24 ~e~lw~KCp~c~~~~-------y~~eL~~n~~vcp~c~~h 56 (294)
T COG0777 24 PEGLWTKCPSCGEML-------YRKELESNLKVCPKCGHH 56 (294)
T ss_pred CCCceeECCCcccee-------eHHHHHhhhhcccccCcc
Confidence 478899999999876 555555566788776544
No 457
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=21.83 E-value=35 Score=30.16 Aligned_cols=77 Identities=17% Similarity=0.299 Sum_probs=39.3
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-Cch-H----------HHHHHHHHHHHHHcCCCchhhhhhhhhhh--cc
Q 048108 71 ILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVA-A----------DGAFKLIRSANNVLTDPGKRKAFDNRIRL--NK 136 (193)
Q Consensus 71 vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~-a----------~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~--~~ 136 (193)
-||| +.+.+..+--...+++.-+...|-.+ .+. - +-.|..+..|. +..+..|-.-+-++++ ..
T Consensus 167 ELGL-SADtdmAD~I~el~~~pFLtNSDAHSp~phrLgREfn~f~v~~~sF~~~r~Ai--~~~~g~~ivaNyGLdP~LGK 243 (403)
T COG1379 167 ELGL-SADTDMADMIEELHRLPFLTNSDAHSPYPHRLGREFNQFEVEEISFEELRKAI--KGKDGCKIVANYGLDPRLGK 243 (403)
T ss_pred Hhcc-ccCchHHHHHHHhccCCcccccccCCCchhhhhhhhheeecccCCHHHHHHHH--hcCCCceEEEecCcCccccc
Confidence 4788 77777776666666665554444332 111 0 11255555542 2223333333333333 33
Q ss_pred cccccCCCCCCCCC
Q 048108 137 VKLMSCSCCRPQGA 150 (193)
Q Consensus 137 ~f~~~c~~c~~~~~ 150 (193)
-..+.|.+|+..|.
T Consensus 244 Y~~TAC~rC~t~y~ 257 (403)
T COG1379 244 YHLTACSRCYTRYS 257 (403)
T ss_pred hhHHHHHHhhhccC
Confidence 34678888887775
No 458
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=21.63 E-value=1.9e+02 Score=22.37 Aligned_cols=32 Identities=22% Similarity=0.026 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNP 44 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p 44 (193)
|..-...|...+..|+.++|+..+.+|..+--
T Consensus 2 A~~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~ 33 (155)
T PF10938_consen 2 AMRDIQKARLALFQGDTDEAKKLLEDAQGKLD 33 (155)
T ss_dssp HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 56677889999999999999999999987543
No 459
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=21.57 E-value=2e+02 Score=23.23 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 048108 29 IDMAIKTLKAAKEFNPDLPNIDDYFTACR 57 (193)
Q Consensus 29 ~~~A~~~~~~a~~l~p~~~~i~~~l~~~~ 57 (193)
|+.|..++++|...+|+.+-.+..|+...
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 78899999999999999876666665543
No 460
>PF12854 PPR_1: PPR repeat
Probab=21.56 E-value=1.6e+02 Score=16.27 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=16.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 048108 18 DAAEEYFKLQNIDMAIKTLKA 38 (193)
Q Consensus 18 ~~A~~~~~~~d~~~A~~~~~~ 38 (193)
-+-..+-+.|++++|.+++.+
T Consensus 12 ~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 12 TLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HHHHHHHHCCCHHHHHHHHHh
Confidence 345567789999999988865
No 461
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=21.48 E-value=1.4e+02 Score=15.55 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=19.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 048108 18 DAAEEYFKLQNIDMAIKTLKAAKE 41 (193)
Q Consensus 18 ~~A~~~~~~~d~~~A~~~~~~a~~ 41 (193)
.+...+.+.|+++.|...+..-.+
T Consensus 6 ~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 6 ALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455678889999999998887665
No 462
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=21.08 E-value=82 Score=29.59 Aligned_cols=40 Identities=10% Similarity=0.223 Sum_probs=25.7
Q ss_pred ccccccCCCCCCCCCCCCCCcccccccCcceeeCC--CCccccccCccCCCc
Q 048108 136 KVKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPR--KYRAKAIFCQCQGRR 185 (193)
Q Consensus 136 ~~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~--~~~~~~~~C~~C~~~ 185 (193)
..|...||+|+..+...+.+ +..+. .......-|+.||..
T Consensus 197 r~~~vpCPhCg~~~~l~~~~----------l~w~~~~~~~~a~y~C~~Cg~~ 238 (557)
T PF05876_consen 197 RRYYVPCPHCGEEQVLEWEN----------LKWDKGEAPETARYVCPHCGCE 238 (557)
T ss_pred eEEEccCCCCCCCccccccc----------eeecCCCCccceEEECCCCcCC
Confidence 36778999999998733222 22232 345566788888863
No 463
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=20.83 E-value=66 Score=19.01 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=9.5
Q ss_pred cCccCCCcceEec
Q 048108 178 FCQCQGRRKIVIL 190 (193)
Q Consensus 178 ~C~~C~~~~~v~~ 190 (193)
.|+.|+.++.++.
T Consensus 2 ~Cp~C~~~~a~~~ 14 (40)
T smart00440 2 PCPKCGNREATFF 14 (40)
T ss_pred cCCCCCCCeEEEE
Confidence 5788888777764
No 464
>PF13041 PPR_2: PPR repeat family
Probab=20.82 E-value=1.8e+02 Score=17.10 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=22.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 19 AAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 19 ~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
+-..+.+.|++++|.+.+.+..+..-.+
T Consensus 9 li~~~~~~~~~~~a~~l~~~M~~~g~~P 36 (50)
T PF13041_consen 9 LISGYCKAGKFEEALKLFKEMKKRGIKP 36 (50)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCC
Confidence 4456889999999999999998764444
No 465
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=20.76 E-value=2.5e+02 Score=26.17 Aligned_cols=35 Identities=9% Similarity=0.103 Sum_probs=25.2
Q ss_pred hhcccccchhhhhcCC----------CCCCCHHHHHHHHHHHHHh
Q 048108 60 QLSETKSTLYKILAIT----------DPQVDISVIKKQFKKMALM 94 (193)
Q Consensus 60 ~~~~~~~d~Y~vLgv~----------~~~a~~~~Ik~aYr~l~~~ 94 (193)
++..+++--|+.+|.. .+..++++||.-|.++.+.
T Consensus 65 LsDp~kRaIYD~~G~qGL~t~gwEl~~r~~tpeEIreE~Erl~r~ 109 (546)
T KOG0718|consen 65 LSDPQKRAIYDNYGEQGLKTEGWELGFRGKTPEEIREEYERLQRE 109 (546)
T ss_pred hcChHHHHHHHHhhhccccccCceeecCCCCHHHHHHHHHHHHHH
Confidence 3444556667777642 4788999999999888763
No 466
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=20.67 E-value=49 Score=29.97 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=11.9
Q ss_pred ccCccCCCcceEe
Q 048108 177 IFCQCQGRRKIVI 189 (193)
Q Consensus 177 ~~C~~C~~~~~v~ 189 (193)
..|+.|+|+|.|.
T Consensus 391 ~~Cp~C~G~G~v~ 403 (414)
T TIGR00757 391 TVCPHCSGTGIVK 403 (414)
T ss_pred CCCCCCcCeeEEc
Confidence 7899999999985
No 467
>PRK14300 chaperone protein DnaJ; Provisional
Probab=20.63 E-value=54 Score=29.04 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=10.7
Q ss_pred ccCccCCCcceEecccC
Q 048108 177 IFCQCQGRRKIVILRNC 193 (193)
Q Consensus 177 ~~C~~C~~~~~v~~~~c 193 (193)
..|+.|.|+|.++.++|
T Consensus 185 ~~C~~C~G~G~~~~~~C 201 (372)
T PRK14300 185 QACHKCQGNGQIIKNPC 201 (372)
T ss_pred EeCCCCCccceEeCCCC
Confidence 45666666666666655
No 468
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=20.59 E-value=91 Score=31.37 Aligned_cols=67 Identities=15% Similarity=0.178 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHcCCCchhhhhhhhhhhcccccccCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCCc
Q 048108 106 DGAFKLIRSANNVLTDPGKRKAFDNRIRLNKVKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRR 185 (193)
Q Consensus 106 ~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~~~~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~~ 185 (193)
...|..|...|.-+.... ..-|....-..++-...||.|.+.+..... -.+.....+.|+.|+|+
T Consensus 706 ~g~~d~iR~lfa~~~~a~-~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~--------------~~f~~~~~~~C~~C~G~ 770 (943)
T PRK00349 706 TGVFDPIRELFAGTPEAK-ARGYKPGRFSFNVKGGRCEACQGDGVIKIE--------------MHFLPDVYVPCDVCKGK 770 (943)
T ss_pred ccccHHHHHHhccCcccc-ccCCCcccCCCCCCCCCCCcccccceEEEE--------------eccCCCccccCccccCc
Confidence 345777777776664322 222332221122223479999888752111 11222355899999998
Q ss_pred ce
Q 048108 186 KI 187 (193)
Q Consensus 186 ~~ 187 (193)
++
T Consensus 771 R~ 772 (943)
T PRK00349 771 RY 772 (943)
T ss_pred cc
Confidence 75
No 469
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=20.50 E-value=8.5e+02 Score=24.19 Aligned_cols=87 Identities=15% Similarity=0.037 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHHHHHHHHH
Q 048108 14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMAL 93 (193)
Q Consensus 14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~ 93 (193)
-.+..++..+...|.+++|+..+..|..++|+...+ +.+..+.++ .+|= ++. -.++.+-+-++
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s--~~Ala~~ll----------e~G~-~~l----a~~~~~L~dal 747 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS--MTALAELLL----------ELGS-PRL----AEKRSLLSDAL 747 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH--HHHHHHHHH----------HhCC-cch----HHHHHHHHHHH
Confidence 344556677788888899999999999999988533 333333322 2332 221 12445666677
Q ss_pred hcCCCCCCCchHHHHHHHHHHHHHHcCCCc
Q 048108 94 MLHPDKNSSVAADGAFKLIRSANNVLTDPG 123 (193)
Q Consensus 94 ~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~ 123 (193)
++-|+-. +++..+.+.++.++|-.
T Consensus 748 r~dp~n~------eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 748 RLDPLNH------EAWYYLGEVFKKLGDSK 771 (799)
T ss_pred hhCCCCH------HHHHHHHHHHHHccchH
Confidence 7877654 67777888888888754
No 470
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=20.46 E-value=1.5e+02 Score=29.10 Aligned_cols=92 Identities=18% Similarity=0.149 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHHH
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQ 87 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~a 87 (193)
+|.-.|.+-+..|.-.++.+||.+|.+.++.+.+++|-.. ..||..=-+ --.....+++-.
T Consensus 480 sn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~------------------~~wf~~G~~-ALqlek~q~av~ 540 (777)
T KOG1128|consen 480 SNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQL------------------GTWFGLGCA-ALQLEKEQAAVK 540 (777)
T ss_pred hhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccch------------------hHHHhccHH-HHHHhhhHHHHH
Q ss_pred HHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCch
Q 048108 88 FKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGK 124 (193)
Q Consensus 88 Yr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~ 124 (193)
+-......-||.. ++|+.+..||-++.+..+
T Consensus 541 aF~rcvtL~Pd~~------eaWnNls~ayi~~~~k~r 571 (777)
T KOG1128|consen 541 AFHRCVTLEPDNA------EAWNNLSTAYIRLKKKKR 571 (777)
T ss_pred HHHHHhhcCCCch------hhhhhhhHHHHHHhhhHH
No 471
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=20.42 E-value=3.4e+02 Score=24.50 Aligned_cols=37 Identities=11% Similarity=0.055 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD 45 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~ 45 (193)
=+.+.--++++|..+-.++++++|.++|..+..++|.
T Consensus 286 fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~ 322 (478)
T KOG1129|consen 286 FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPI 322 (478)
T ss_pred CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 3455566778888999999999999999999998886
No 472
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=20.29 E-value=59 Score=18.78 Aligned_cols=11 Identities=18% Similarity=0.754 Sum_probs=8.7
Q ss_pred ccCCCCCCCCC
Q 048108 140 MSCSCCRPQGA 150 (193)
Q Consensus 140 ~~c~~c~~~~~ 150 (193)
..||.|...|.
T Consensus 3 i~Cp~C~~~y~ 13 (36)
T PF13717_consen 3 ITCPNCQAKYE 13 (36)
T ss_pred EECCCCCCEEe
Confidence 46888888886
No 473
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=20.26 E-value=88 Score=20.82 Aligned_cols=11 Identities=18% Similarity=0.540 Sum_probs=8.5
Q ss_pred ccCCCCCCCCC
Q 048108 140 MSCSCCRPQGA 150 (193)
Q Consensus 140 ~~c~~c~~~~~ 150 (193)
..||+|+..-.
T Consensus 7 KPCPFCG~~~~ 17 (64)
T PRK09710 7 KPCPFCGCPSV 17 (64)
T ss_pred cCCCCCCCcee
Confidence 47999988774
No 474
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.24 E-value=2.6e+02 Score=23.85 Aligned_cols=73 Identities=15% Similarity=0.102 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHH
Q 048108 8 LVKLAAEKARDAAEE-YFKLQNIDMAIKTLKAAKEFNPDL-PNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIK 85 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~-~~~~~d~~~A~~~~~~a~~l~p~~-~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik 85 (193)
.++++|..||.+|-. +-.+|++.-|-++.....+++.+. .++.+-+.-.+.. -+||+.=.+ ...|+.--||
T Consensus 87 ~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~A------ae~yk~ees-~ssANKC~lK 159 (288)
T KOG1586|consen 87 VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQA------AEYYKGEES-VSSANKCLLK 159 (288)
T ss_pred cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHH------HHHHcchhh-hhhHHHHHHH
Q ss_pred HH
Q 048108 86 KQ 87 (193)
Q Consensus 86 ~a 87 (193)
-|
T Consensus 160 vA 161 (288)
T KOG1586|consen 160 VA 161 (288)
T ss_pred HH
No 475
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=20.16 E-value=1.6e+02 Score=20.77 Aligned_cols=50 Identities=10% Similarity=0.307 Sum_probs=31.4
Q ss_pred cCCCCCC-CHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhh
Q 048108 73 AITDPQV-DISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNR 131 (193)
Q Consensus 73 gv~~~~a-~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~ 131 (193)
|+ +|+. ...+|-+.+..++..+++ ...+.+..|.+.| +.||.-+..||..
T Consensus 51 g~-~p~s~evq~l~~~~~~~~~~~~~------~~~~~~~~l~~~y--~~~~~~~~~~~~~ 101 (118)
T PF07739_consen 51 GV-DPDSPEVQELAERWMELINQFTG------GDPELLRGLAQMY--VEDPRFAAMYDKK 101 (118)
T ss_dssp T---TT-HHHHHHHHHHHHHHHHSS---------HHHHHHHHHHT--TSTHHHHHHHG-G
T ss_pred CC-CcCCHHHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHH--HcCHHHHhhcccc
Confidence 45 4433 345567777777777777 3346788888888 8888888888833
No 476
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=20.09 E-value=89 Score=19.87 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=20.2
Q ss_pred ccccccCCCCCCCCCCCCCCcccccccCcceeeCCCC
Q 048108 136 KVKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKY 172 (193)
Q Consensus 136 ~~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~ 172 (193)
..+...|+.|.....- .. ...+.....+|+.|.
T Consensus 19 ~r~aLIC~~C~~hNGl-a~---~~~~~~i~y~C~~Cg 51 (54)
T PF10058_consen 19 NRYALICSKCFSHNGL-AP---KEEFEEIQYRCPYCG 51 (54)
T ss_pred CceeEECcccchhhcc-cc---cccCCceEEEcCCCC
Confidence 4567789999887751 10 255555566665543
No 477
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.07 E-value=2.5e+02 Score=25.73 Aligned_cols=58 Identities=12% Similarity=0.241 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHH-HHHHHHHhhcccccchhhhhcC
Q 048108 14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDY-FTACRVHQLSETKSTLYKILAI 74 (193)
Q Consensus 14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~-l~~~~~~~~~~~~~d~Y~vLgv 74 (193)
....+++.=|+..|+++.|++.|.++.....+...+-.| +..+.|.+.. .||-.||-.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~---~nw~hv~sy 209 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYM---GNWGHVLSY 209 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhh---cchhhhhhH
Confidence 345677888899999999999999999998887654433 3444444333 577777766
Done!