Query 048108
Match_columns 193
No_of_seqs 272 out of 1972
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 10:44:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048108.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048108hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l6l_A DNAJ homolog subfamily 99.9 2.5E-24 8.6E-29 167.0 6.9 110 64-190 8-147 (155)
2 1hdj_A Human HSP40, HDJ-1; mol 99.9 4E-22 1.4E-26 137.3 7.6 68 66-134 3-70 (77)
3 2ctp_A DNAJ homolog subfamily 99.9 3.4E-22 1.2E-26 138.0 6.9 71 63-134 4-74 (78)
4 2ctr_A DNAJ homolog subfamily 99.9 8.8E-22 3E-26 139.1 7.5 70 64-134 5-74 (88)
5 2dn9_A DNAJ homolog subfamily 99.8 1.1E-21 3.8E-26 135.7 6.8 71 63-134 4-75 (79)
6 2cug_A Mkiaa0962 protein; DNAJ 99.8 1.3E-21 4.4E-26 138.3 7.0 69 65-134 16-84 (88)
7 2ej7_A HCG3 gene; HCG3 protein 99.8 2.8E-21 9.6E-26 134.6 8.0 69 64-133 7-77 (82)
8 1wjz_A 1700030A21RIK protein; 99.8 2.3E-21 7.9E-26 138.2 6.7 69 65-134 15-90 (94)
9 2och_A Hypothetical protein DN 99.8 4.1E-21 1.4E-25 131.0 7.3 66 65-133 7-72 (73)
10 2yua_A Williams-beuren syndrom 99.8 4.2E-21 1.4E-25 138.5 7.4 70 64-134 15-85 (99)
11 2ctq_A DNAJ homolog subfamily 99.8 5.4E-21 1.8E-25 140.9 7.1 70 64-134 18-88 (112)
12 2dmx_A DNAJ homolog subfamily 99.8 9.9E-21 3.4E-25 134.6 6.1 70 64-134 7-78 (92)
13 2lgw_A DNAJ homolog subfamily 99.8 1.5E-20 5.1E-25 135.7 6.6 68 66-134 2-71 (99)
14 2ctw_A DNAJ homolog subfamily 99.8 2.3E-20 7.9E-25 136.9 7.5 70 64-134 15-85 (109)
15 1bq0_A DNAJ, HSP40; chaperone, 99.8 8.3E-21 2.8E-25 137.8 3.9 68 66-134 3-71 (103)
16 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 1.4E-20 4.7E-25 137.9 4.7 71 65-136 14-89 (109)
17 2o37_A Protein SIS1; HSP40, J- 99.8 2.9E-20 1E-24 132.3 6.2 67 65-134 7-73 (92)
18 2ys8_A RAB-related GTP-binding 99.8 6.4E-20 2.2E-24 130.2 6.1 62 65-127 26-87 (90)
19 3apq_A DNAJ homolog subfamily 99.8 7.2E-19 2.5E-23 140.9 6.5 68 66-134 2-70 (210)
20 3hho_A CO-chaperone protein HS 99.7 1.6E-18 5.4E-23 136.9 5.7 69 65-134 3-79 (174)
21 2y4t_A DNAJ homolog subfamily 99.7 4.6E-18 1.6E-22 145.8 8.4 122 9-131 325-450 (450)
22 1gh6_A Large T antigen; tumor 99.7 2.9E-19 1E-23 132.0 0.3 65 65-133 7-73 (114)
23 2pf4_E Small T antigen; PP2A, 99.7 2.4E-19 8.1E-24 141.3 -0.6 68 62-133 7-76 (174)
24 3ag7_A Putative uncharacterize 99.7 6E-19 2.1E-23 128.8 1.2 80 40-123 16-104 (106)
25 2qwo_B Putative tyrosine-prote 99.7 1.2E-18 4.2E-23 123.9 2.3 73 46-121 15-91 (92)
26 1n4c_A Auxilin; four helix bun 99.7 1.2E-18 4.2E-23 138.1 2.2 80 46-128 99-182 (182)
27 3lz8_A Putative chaperone DNAJ 99.7 5.1E-19 1.8E-23 152.4 0.0 68 65-133 27-94 (329)
28 1fpo_A HSC20, chaperone protei 99.7 5.6E-18 1.9E-22 133.4 5.3 68 66-134 1-76 (171)
29 1faf_A Large T antigen; J doma 99.7 2.6E-18 8.9E-23 119.0 2.9 63 63-129 8-72 (79)
30 1iur_A KIAA0730 protein; DNAJ 99.7 4.4E-18 1.5E-22 120.2 3.1 60 66-126 16-77 (88)
31 3bvo_A CO-chaperone protein HS 99.7 1.6E-17 5.5E-22 134.5 5.7 69 64-133 41-117 (207)
32 3uo3_A J-type CO-chaperone JAC 99.7 2.5E-17 8.5E-22 130.8 2.9 69 62-132 7-81 (181)
33 2guz_A Mitochondrial import in 99.6 6E-17 2.1E-21 109.9 3.2 56 66-125 14-70 (71)
34 3apo_A DNAJ homolog subfamily 99.6 3.7E-16 1.3E-20 146.7 0.5 70 64-134 19-89 (780)
35 2guz_B Mitochondrial import in 98.9 7.5E-10 2.6E-14 73.5 4.8 50 67-120 5-57 (65)
36 2pzi_A Probable serine/threoni 97.8 8.9E-06 3E-10 75.1 4.1 105 6-118 527-675 (681)
37 4gco_A Protein STI-1; structur 97.3 0.0055 1.9E-07 43.8 11.9 44 7-50 7-50 (126)
38 4ga2_A E3 SUMO-protein ligase 96.7 0.004 1.4E-07 45.7 6.9 51 6-56 24-74 (150)
39 4gcn_A Protein STI-1; structur 96.6 0.017 5.7E-07 41.1 9.4 39 10-48 5-43 (127)
40 3upv_A Heat shock protein STI1 96.6 0.0096 3.3E-07 41.5 7.5 39 11-49 2-40 (126)
41 3gyz_A Chaperone protein IPGC; 96.4 0.066 2.3E-06 39.7 12.0 49 2-50 25-73 (151)
42 4gco_A Protein STI-1; structur 96.3 0.003 1E-07 45.2 3.6 82 6-90 40-123 (126)
43 2l6j_A TPR repeat-containing p 96.2 0.044 1.5E-06 36.5 9.2 37 12-48 3-39 (111)
44 3rkv_A Putative peptidylprolyl 96.0 0.0048 1.6E-07 45.2 3.5 69 9-78 59-129 (162)
45 3sz7_A HSC70 cochaperone (SGT) 95.8 0.0092 3.2E-07 43.7 4.4 42 8-49 6-47 (164)
46 4gcn_A Protein STI-1; structur 95.8 0.012 4.1E-07 41.9 4.8 45 6-50 35-79 (127)
47 3gyz_A Chaperone protein IPGC; 95.7 0.011 3.7E-07 44.1 4.3 44 7-50 64-107 (151)
48 2hr2_A Hypothetical protein; a 95.5 0.0067 2.3E-07 46.5 2.5 53 7-59 92-148 (159)
49 2xcb_A PCRH, regulatory protei 95.4 0.058 2E-06 38.5 7.5 49 2-50 7-55 (142)
50 3ma5_A Tetratricopeptide repea 95.4 0.026 8.8E-07 38.3 5.2 41 9-49 3-43 (100)
51 2vgx_A Chaperone SYCD; alterna 95.4 0.011 3.7E-07 43.4 3.3 85 7-92 49-136 (148)
52 2kat_A Uncharacterized protein 95.3 0.0077 2.6E-07 41.4 2.3 43 7-49 13-55 (115)
53 2vgx_A Chaperone SYCD; alterna 95.3 0.28 9.7E-06 35.5 11.0 48 3-50 11-58 (148)
54 2fbn_A 70 kDa peptidylprolyl i 95.2 0.25 8.6E-06 37.0 10.7 46 2-47 27-72 (198)
55 3rkv_A Putative peptidylprolyl 95.1 0.058 2E-06 39.2 6.7 55 7-61 91-146 (162)
56 2kc7_A BFR218_protein; tetratr 95.1 0.018 6.1E-07 38.2 3.5 31 17-47 4-34 (99)
57 3upv_A Heat shock protein STI1 95.1 0.012 4.2E-07 40.9 2.8 84 7-91 32-121 (126)
58 2xcb_A PCRH, regulatory protei 95.1 0.011 3.9E-07 42.4 2.6 50 7-56 46-95 (142)
59 3sz7_A HSC70 cochaperone (SGT) 95.0 0.1 3.6E-06 37.9 7.9 42 7-48 39-80 (164)
60 1na3_A Designed protein CTPR2; 95.0 0.027 9.2E-07 36.2 4.1 40 11-50 7-46 (91)
61 3k9i_A BH0479 protein; putativ 94.9 0.07 2.4E-06 36.7 6.3 44 9-52 23-66 (117)
62 3vtx_A MAMA; tetratricopeptide 94.8 0.048 1.6E-06 40.1 5.6 39 11-49 3-41 (184)
63 2kc7_A BFR218_protein; tetratr 94.7 0.17 5.9E-06 33.2 7.7 42 9-50 30-72 (99)
64 1hxi_A PEX5, peroxisome target 94.5 0.057 2E-06 37.9 5.2 37 14-50 18-54 (121)
65 2vyi_A SGTA protein; chaperone 94.4 0.13 4.4E-06 34.6 6.6 45 4-48 3-47 (131)
66 1pc2_A Mitochondria fission pr 94.4 0.17 5.7E-06 38.4 7.7 53 11-63 69-121 (152)
67 2l6j_A TPR repeat-containing p 94.3 0.039 1.3E-06 36.8 3.8 40 8-47 33-72 (111)
68 3urz_A Uncharacterized protein 94.3 0.062 2.1E-06 41.2 5.2 43 7-49 32-90 (208)
69 1elw_A TPR1-domain of HOP; HOP 94.2 0.042 1.4E-06 36.5 3.7 46 9-54 34-79 (118)
70 2dba_A Smooth muscle cell asso 94.2 0.031 1.1E-06 39.1 3.0 77 12-91 64-142 (148)
71 3bee_A Putative YFRE protein; 94.2 0.1 3.4E-06 35.7 5.6 81 9-90 2-88 (93)
72 3q49_B STIP1 homology and U bo 94.1 0.032 1.1E-06 38.9 2.9 40 10-49 6-45 (137)
73 3ieg_A DNAJ homolog subfamily 94.1 0.036 1.2E-06 44.3 3.6 36 14-49 273-308 (359)
74 2if4_A ATFKBP42; FKBP-like, al 94.0 0.011 3.9E-07 49.4 0.5 33 15-47 232-264 (338)
75 2xev_A YBGF; tetratricopeptide 93.9 0.061 2.1E-06 36.9 4.1 37 12-48 38-74 (129)
76 4ga2_A E3 SUMO-protein ligase 93.8 0.048 1.6E-06 39.7 3.6 44 6-49 58-101 (150)
77 2hr2_A Hypothetical protein; a 93.8 0.55 1.9E-05 35.7 9.6 37 10-46 8-44 (159)
78 1kt0_A FKBP51, 51 kDa FK506-bi 93.8 0.18 6E-06 43.9 7.7 46 2-47 257-302 (457)
79 3k9i_A BH0479 protein; putativ 93.8 0.076 2.6E-06 36.6 4.4 50 9-58 57-106 (117)
80 2e2e_A Formate-dependent nitri 93.7 0.14 4.9E-06 37.3 6.2 39 12-50 77-118 (177)
81 1na3_A Designed protein CTPR2; 93.7 0.26 8.9E-06 31.3 6.7 46 9-54 39-84 (91)
82 2fbn_A 70 kDa peptidylprolyl i 93.6 0.094 3.2E-06 39.4 5.0 36 13-48 88-123 (198)
83 1ihg_A Cyclophilin 40; ppiase 93.6 0.076 2.6E-06 45.1 4.9 70 8-78 268-339 (370)
84 3mkr_A Coatomer subunit epsilo 93.4 0.18 6.1E-06 41.0 6.7 37 12-48 199-235 (291)
85 2v5f_A Prolyl 4-hydroxylase su 93.3 0.3 1E-05 33.4 6.9 47 12-58 45-91 (104)
86 3q49_B STIP1 homology and U bo 93.2 0.039 1.3E-06 38.4 2.1 49 6-54 36-84 (137)
87 1elr_A TPR2A-domain of HOP; HO 93.1 0.11 3.9E-06 34.9 4.4 47 13-60 79-125 (131)
88 2kck_A TPR repeat; tetratricop 93.1 0.076 2.6E-06 34.9 3.4 31 16-46 9-39 (112)
89 1p5q_A FKBP52, FK506-binding p 93.1 0.75 2.6E-05 38.0 10.2 46 2-47 136-181 (336)
90 1hh8_A P67PHOX, NCF-2, neutrop 93.1 0.15 5.1E-06 38.1 5.4 35 13-47 37-71 (213)
91 2lni_A Stress-induced-phosphop 93.0 0.083 2.8E-06 35.9 3.5 45 7-51 44-88 (133)
92 2ctt_A DNAJ homolog subfamily 92.9 0.049 1.7E-06 38.4 2.3 17 177-193 68-84 (104)
93 1elw_A TPR1-domain of HOP; HOP 92.9 0.27 9.1E-06 32.3 6.0 37 12-48 3-39 (118)
94 4gyw_A UDP-N-acetylglucosamine 92.8 0.72 2.5E-05 42.9 10.7 39 9-47 5-43 (723)
95 2vyi_A SGTA protein; chaperone 92.7 0.26 8.9E-06 32.9 5.8 41 9-49 42-82 (131)
96 1elr_A TPR2A-domain of HOP; HO 92.6 0.41 1.4E-05 32.0 6.7 38 11-48 2-39 (131)
97 1nzn_A CGI-135 protein, fissio 92.6 0.38 1.3E-05 35.3 6.8 52 11-62 72-123 (126)
98 4gyw_A UDP-N-acetylglucosamine 92.6 0.29 9.9E-06 45.6 7.6 42 7-48 37-78 (723)
99 2dba_A Smooth muscle cell asso 92.4 0.28 9.4E-06 34.0 5.8 39 8-46 23-61 (148)
100 3urz_A Uncharacterized protein 92.3 0.095 3.3E-06 40.1 3.4 45 7-51 82-126 (208)
101 1a17_A Serine/threonine protei 92.3 0.14 4.9E-06 36.2 4.1 42 9-50 43-84 (166)
102 2yhc_A BAMD, UPF0169 lipoprote 92.2 2.4 8.3E-05 32.2 11.5 35 14-48 42-76 (225)
103 1p5q_A FKBP52, FK506-binding p 92.2 0.12 4.2E-06 42.9 4.1 67 10-79 193-263 (336)
104 1na0_A Designed protein CTPR3; 92.2 0.34 1.2E-05 32.0 5.8 39 10-48 40-78 (125)
105 3qky_A Outer membrane assembly 92.1 2.8 9.4E-05 32.4 11.9 35 14-48 149-183 (261)
106 1exk_A DNAJ protein; extended 92.0 0.072 2.5E-06 35.4 2.1 17 177-193 51-67 (79)
107 3ma5_A Tetratricopeptide repea 91.9 0.052 1.8E-06 36.7 1.3 41 8-48 36-76 (100)
108 2xev_A YBGF; tetratricopeptide 91.7 1.7 5.8E-05 29.2 9.2 33 15-47 4-36 (129)
109 1hxi_A PEX5, peroxisome target 91.7 0.35 1.2E-05 33.7 5.6 43 8-50 46-88 (121)
110 3u4t_A TPR repeat-containing p 91.7 0.25 8.6E-06 38.1 5.2 48 12-59 220-267 (272)
111 1kt0_A FKBP51, 51 kDa FK506-bi 91.7 0.13 4.4E-06 44.7 3.9 66 10-78 314-383 (457)
112 4i17_A Hypothetical protein; T 91.6 0.16 5.3E-06 38.7 3.8 53 6-58 144-225 (228)
113 1zu2_A Mitochondrial import re 91.6 0.08 2.7E-06 40.4 2.1 51 7-57 74-135 (158)
114 3bee_A Putative YFRE protein; 91.5 0.86 2.9E-05 30.9 7.2 50 8-57 38-87 (93)
115 2lni_A Stress-induced-phosphop 91.5 0.17 5.9E-06 34.3 3.6 41 9-49 12-52 (133)
116 3o48_A Mitochondria fission 1 91.4 0.4 1.4E-05 35.6 5.7 52 12-63 77-128 (134)
117 1a17_A Serine/threonine protei 91.2 0.65 2.2E-05 32.7 6.7 39 10-48 10-48 (166)
118 2c2l_A CHIP, carboxy terminus 91.2 2.4 8.3E-05 33.8 10.8 37 12-48 3-39 (281)
119 1ihg_A Cyclophilin 40; ppiase 90.9 0.68 2.3E-05 39.1 7.5 55 6-60 300-354 (370)
120 2pl2_A Hypothetical conserved 90.9 0.21 7.2E-06 38.3 4.0 41 8-48 34-74 (217)
121 3qky_A Outer membrane assembly 90.8 2.4 8.3E-05 32.7 10.3 38 9-46 11-48 (261)
122 3vtx_A MAMA; tetratricopeptide 90.8 0.38 1.3E-05 35.1 5.2 38 12-49 72-109 (184)
123 2kat_A Uncharacterized protein 90.7 0.094 3.2E-06 35.7 1.6 39 9-47 49-87 (115)
124 1y8m_A FIS1; mitochondria, unk 90.6 0.77 2.6E-05 34.4 6.7 52 12-63 76-127 (144)
125 4i17_A Hypothetical protein; T 90.4 0.36 1.2E-05 36.6 4.9 36 12-47 75-110 (228)
126 3uq3_A Heat shock protein STI1 90.1 0.93 3.2E-05 34.1 7.1 34 10-43 2-35 (258)
127 2r5s_A Uncharacterized protein 89.8 0.54 1.9E-05 34.5 5.3 38 9-46 104-141 (176)
128 2r5s_A Uncharacterized protein 89.7 0.11 3.8E-06 38.3 1.4 34 13-46 6-39 (176)
129 1qqe_A Vesicular transport pro 89.7 1.4 4.7E-05 35.3 8.1 38 11-48 75-112 (292)
130 2kck_A TPR repeat; tetratricop 89.6 0.15 5.1E-06 33.4 1.9 35 11-45 38-72 (112)
131 1zu2_A Mitochondrial import re 89.6 0.63 2.2E-05 35.3 5.6 44 5-48 28-81 (158)
132 2pl2_A Hypothetical conserved 89.5 0.26 8.7E-06 37.8 3.4 41 6-47 111-151 (217)
133 1na0_A Designed protein CTPR3; 89.5 0.87 3E-05 29.9 5.8 36 12-47 8-43 (125)
134 1hh8_A P67PHOX, NCF-2, neutrop 88.9 5.4 0.00019 29.2 11.7 31 10-40 3-33 (213)
135 2e2e_A Formate-dependent nitri 88.8 0.43 1.5E-05 34.7 4.1 41 9-49 40-80 (177)
136 2vq2_A PILW, putative fimbrial 88.7 1.1 3.6E-05 33.0 6.3 40 9-48 4-43 (225)
137 1fch_A Peroxisomal targeting s 88.2 3.4 0.00012 33.0 9.6 37 12-48 216-252 (368)
138 3uq3_A Heat shock protein STI1 88.1 0.99 3.4E-05 34.0 5.9 41 8-48 134-174 (258)
139 2bx9_A Anti-trap, AT, tryptoph 87.8 0.19 6.6E-06 31.3 1.3 31 137-190 7-37 (53)
140 1wao_1 Serine/threonine protei 87.7 0.56 1.9E-05 41.0 4.8 49 8-56 69-117 (477)
141 3cv0_A Peroxisome targeting si 87.5 5.3 0.00018 31.0 10.1 39 9-47 168-206 (327)
142 2v5f_A Prolyl 4-hydroxylase su 87.3 1.7 5.8E-05 29.4 6.2 33 13-45 5-37 (104)
143 3qou_A Protein YBBN; thioredox 87.2 1.4 4.6E-05 35.4 6.5 45 11-55 115-159 (287)
144 3fp2_A TPR repeat-containing p 87.2 0.44 1.5E-05 40.6 3.7 38 10-47 22-59 (537)
145 3lcz_A YCZA, inhibitor of trap 87.1 0.27 9.2E-06 30.6 1.7 14 177-190 24-37 (53)
146 2pzi_A Probable serine/threoni 87.0 2 7E-05 39.1 8.3 43 7-49 427-469 (681)
147 3qou_A Protein YBBN; thioredox 87.0 0.9 3.1E-05 36.5 5.3 38 9-46 215-252 (287)
148 3fp2_A TPR repeat-containing p 86.9 0.49 1.7E-05 40.3 3.8 76 8-84 54-130 (537)
149 1w3b_A UDP-N-acetylglucosamine 86.7 2.4 8.3E-05 34.5 7.9 39 9-47 63-101 (388)
150 3ieg_A DNAJ homolog subfamily 86.5 1.6 5.6E-05 34.4 6.6 35 13-47 37-71 (359)
151 3lcz_A YCZA, inhibitor of trap 86.4 0.21 7.3E-06 31.1 0.9 18 176-193 9-26 (53)
152 1xnf_A Lipoprotein NLPI; TPR, 86.4 1.7 5.7E-05 33.2 6.4 40 9-48 39-78 (275)
153 3ro3_A PINS homolog, G-protein 86.3 4.3 0.00015 27.5 8.1 39 10-48 6-44 (164)
154 3u4t_A TPR repeat-containing p 86.1 9.3 0.00032 28.9 11.6 40 13-52 74-113 (272)
155 2c2l_A CHIP, carboxy terminus 85.9 0.47 1.6E-05 38.1 3.1 38 10-47 35-72 (281)
156 2fo7_A Synthetic consensus TPR 85.9 1.6 5.4E-05 28.8 5.4 34 14-47 2-35 (136)
157 2yhc_A BAMD, UPF0169 lipoprote 85.6 3.1 0.00011 31.6 7.6 34 16-49 150-183 (225)
158 3as5_A MAMA; tetratricopeptide 85.2 1.3 4.6E-05 31.1 5.0 37 11-47 40-76 (186)
159 4abn_A Tetratricopeptide repea 85.2 0.8 2.7E-05 39.7 4.4 45 11-55 256-300 (474)
160 2ho1_A Type 4 fimbrial biogene 84.6 1.6 5.4E-05 33.1 5.4 41 7-47 30-71 (252)
161 2q7f_A YRRB protein; TPR, prot 84.4 0.3 1E-05 36.8 1.1 45 9-53 155-199 (243)
162 2gw1_A Mitochondrial precursor 84.1 3.6 0.00012 34.4 7.9 35 15-49 414-451 (514)
163 3ax2_A Mitochondrial import re 84.0 2.6 8.9E-05 27.8 5.4 41 15-58 19-59 (73)
164 2y4t_A DNAJ homolog subfamily 83.7 2.1 7E-05 35.5 6.1 42 6-47 19-60 (450)
165 3hym_B Cell division cycle pro 83.6 5.2 0.00018 31.0 8.3 38 10-47 122-159 (330)
166 4g1t_A Interferon-induced prot 83.4 7.1 0.00024 32.5 9.4 112 15-133 336-458 (472)
167 3hym_B Cell division cycle pro 83.3 0.34 1.2E-05 38.2 1.0 66 12-78 235-302 (330)
168 3as5_A MAMA; tetratricopeptide 83.3 2 7E-05 30.2 5.2 42 9-50 72-113 (186)
169 2if4_A ATFKBP42; FKBP-like, al 83.3 0.49 1.7E-05 39.2 2.1 46 2-47 168-213 (338)
170 2fo7_A Synthetic consensus TPR 83.2 2.1 7.2E-05 28.1 5.0 39 10-48 32-70 (136)
171 1wao_1 Serine/threonine protei 83.1 0.81 2.8E-05 40.0 3.5 40 9-48 36-75 (477)
172 2h6f_A Protein farnesyltransfe 83.0 1.1 3.9E-05 38.1 4.3 38 9-46 127-165 (382)
173 1xnf_A Lipoprotein NLPI; TPR, 82.7 1.7 5.7E-05 33.2 4.8 36 12-47 76-111 (275)
174 2gw1_A Mitochondrial precursor 82.6 2.1 7E-05 35.9 5.7 35 11-45 4-38 (514)
175 3ro3_A PINS homolog, G-protein 82.5 9 0.00031 25.8 8.4 37 12-48 48-84 (164)
176 1qqe_A Vesicular transport pro 82.0 8 0.00027 30.6 8.9 36 13-48 158-193 (292)
177 2vsy_A XCC0866; transferase, g 81.8 1.5 5E-05 38.6 4.7 38 9-46 19-56 (568)
178 2q7f_A YRRB protein; TPR, prot 81.4 1.7 5.9E-05 32.4 4.4 38 10-47 54-91 (243)
179 4abn_A Tetratricopeptide repea 81.2 5.1 0.00018 34.5 7.9 38 11-48 100-138 (474)
180 1nlt_A Protein YDJ1, mitochond 80.4 0.85 2.9E-05 37.0 2.4 13 176-188 96-108 (248)
181 2vq2_A PILW, putative fimbrial 80.2 3.5 0.00012 30.1 5.7 29 13-41 76-105 (225)
182 4eqf_A PEX5-related protein; a 80.1 2.5 8.5E-05 34.1 5.2 38 10-47 96-133 (365)
183 2ho1_A Type 4 fimbrial biogene 80.1 3.7 0.00013 30.9 6.0 29 13-41 105-133 (252)
184 2vsy_A XCC0866; transferase, g 79.9 2 6.8E-05 37.7 4.9 35 13-47 91-125 (568)
185 4eqf_A PEX5-related protein; a 79.8 1.4 4.8E-05 35.6 3.6 36 12-47 212-247 (365)
186 4a1s_A PINS, partner of inscut 79.8 4.1 0.00014 33.2 6.5 39 9-47 44-82 (411)
187 2xpi_A Anaphase-promoting comp 79.7 0.92 3.2E-05 39.3 2.6 42 13-54 516-557 (597)
188 3sf4_A G-protein-signaling mod 79.1 8.1 0.00028 30.9 8.1 37 10-46 224-260 (406)
189 1fch_A Peroxisomal targeting s 78.5 2 6.8E-05 34.4 4.1 38 10-47 95-132 (368)
190 2h6f_A Protein farnesyltransfe 77.2 5.6 0.00019 33.7 6.8 42 6-47 90-131 (382)
191 2ff4_A Probable regulatory pro 76.9 5.4 0.00018 33.9 6.6 75 15-93 173-256 (388)
192 3ulq_A Response regulator aspa 76.8 15 0.00052 29.8 9.2 39 10-48 140-178 (383)
193 1om2_A Protein (mitochondrial 76.3 4.2 0.00014 28.3 4.6 41 15-58 22-62 (95)
194 2v6x_A Vacuolar protein sortin 76.2 5.4 0.00019 26.5 5.2 39 4-42 4-42 (85)
195 2ifu_A Gamma-SNAP; membrane fu 76.0 8.6 0.00029 30.7 7.3 33 13-45 76-108 (307)
196 2bx9_A Anti-trap, AT, tryptoph 75.9 0.85 2.9E-05 28.3 0.9 18 176-193 9-26 (53)
197 3cv0_A Peroxisome targeting si 75.9 4.2 0.00014 31.6 5.2 35 13-47 55-89 (327)
198 1w3b_A UDP-N-acetylglucosamine 75.7 2.4 8.3E-05 34.5 3.9 68 8-78 300-371 (388)
199 2cfu_A SDSA1; SDS-hydrolase, l 75.5 5.6 0.00019 36.5 6.7 46 13-58 449-494 (658)
200 3ulq_A Response regulator aspa 75.2 18 0.00062 29.3 9.3 38 10-47 181-218 (383)
201 3u3w_A Transcriptional activat 75.1 17 0.00058 28.5 8.8 30 13-42 155-184 (293)
202 2ifu_A Gamma-SNAP; membrane fu 74.4 11 0.00037 30.0 7.6 31 13-44 116-146 (307)
203 4b4t_Q 26S proteasome regulato 74.3 22 0.00075 29.0 9.6 32 16-47 7-38 (434)
204 2vkj_A TM1634; membrane protei 74.3 12 0.0004 25.9 6.3 42 11-53 51-92 (106)
205 3mkr_A Coatomer subunit epsilo 74.2 3.1 0.0001 33.5 4.1 49 7-55 228-277 (291)
206 2v6y_A AAA family ATPase, P60 74.1 4.1 0.00014 27.2 4.1 32 10-41 8-39 (83)
207 4a5x_A MITD1, MIT domain-conta 73.5 6 0.00021 26.7 4.9 37 6-42 9-45 (86)
208 2cpt_A SKD1 protein, vacuolar 73.4 4.7 0.00016 28.9 4.5 33 10-42 15-47 (117)
209 2ond_A Cleavage stimulation fa 73.0 27 0.00093 27.5 9.6 39 9-47 95-133 (308)
210 3ro2_A PINS homolog, G-protein 73.0 11 0.00038 28.9 7.0 37 9-45 179-215 (338)
211 3edt_B KLC 2, kinesin light ch 72.8 27 0.00091 26.0 10.2 36 9-44 165-200 (283)
212 4f3v_A ESX-1 secretion system 72.7 6.3 0.00022 32.5 5.7 31 15-45 210-240 (282)
213 3sf4_A G-protein-signaling mod 71.9 19 0.00064 28.7 8.4 40 9-48 183-222 (406)
214 3q15_A PSP28, response regulat 71.2 23 0.00078 28.8 8.9 39 10-48 138-176 (378)
215 3edt_B KLC 2, kinesin light ch 70.6 6.2 0.00021 29.7 5.0 34 9-42 123-156 (283)
216 3n71_A Histone lysine methyltr 70.1 36 0.0012 29.9 10.4 31 12-42 308-338 (490)
217 3zyq_A Hepatocyte growth facto 69.7 8.4 0.00029 30.5 5.7 36 141-189 166-201 (226)
218 3gw4_A Uncharacterized protein 69.7 9.8 0.00034 27.3 5.7 35 11-45 105-139 (203)
219 3ro2_A PINS homolog, G-protein 69.0 10 0.00035 29.0 6.0 36 12-47 4-39 (338)
220 4a1s_A PINS, partner of inscut 68.9 17 0.00058 29.4 7.6 36 10-45 220-255 (411)
221 2w2u_A Hypothetical P60 katani 68.1 11 0.00037 25.2 5.1 32 10-41 16-47 (83)
222 2ctt_A DNAJ homolog subfamily 67.0 4.2 0.00014 28.1 3.0 27 165-191 67-96 (104)
223 4h7y_A Dual specificity protei 65.8 24 0.00082 26.7 7.1 43 13-58 94-136 (161)
224 3q15_A PSP28, response regulat 65.2 26 0.00088 28.4 8.0 30 12-41 221-250 (378)
225 1wfd_A Hypothetical protein 15 64.4 14 0.00046 25.2 5.1 33 10-42 12-44 (93)
226 4g1t_A Interferon-induced prot 64.0 8.3 0.00028 32.0 4.8 40 11-50 245-284 (472)
227 2qfc_A PLCR protein; TPR, HTH, 63.3 40 0.0014 26.2 8.6 29 12-40 154-182 (293)
228 1ouv_A Conserved hypothetical 62.1 14 0.00048 28.3 5.6 31 11-41 4-34 (273)
229 1nlt_A Protein YDJ1, mitochond 61.2 4.4 0.00015 32.7 2.4 19 175-193 79-99 (248)
230 3nf1_A KLC 1, kinesin light ch 60.3 14 0.00048 28.2 5.2 36 7-42 21-56 (311)
231 3gw4_A Uncharacterized protein 60.1 16 0.00055 26.1 5.3 33 10-42 63-95 (203)
232 3qww_A SET and MYND domain-con 60.1 39 0.0013 29.1 8.5 50 7-56 334-388 (433)
233 3nf1_A KLC 1, kinesin light ch 59.8 13 0.00044 28.4 5.0 34 9-42 149-182 (311)
234 2xpi_A Anaphase-promoting comp 59.1 17 0.00057 31.2 6.0 40 10-49 197-236 (597)
235 2crb_A Nuclear receptor bindin 58.9 20 0.00067 24.8 5.0 31 11-41 13-43 (97)
236 3qwp_A SET and MYND domain-con 57.5 46 0.0016 28.5 8.5 36 7-42 323-358 (429)
237 1orj_A Flagellar protein FLIS; 56.9 23 0.00078 25.7 5.5 31 11-41 27-61 (130)
238 3iqc_A FLIS, flagellar protein 56.5 20 0.00068 26.0 5.1 32 11-42 34-65 (131)
239 4g9i_A Hydrogenase maturation 56.2 5.1 0.00018 37.7 2.3 60 118-185 115-187 (772)
240 4b4t_Q 26S proteasome regulato 54.9 47 0.0016 26.9 7.9 36 12-47 54-89 (434)
241 2qfc_A PLCR protein; TPR, HTH, 53.9 75 0.0026 24.6 12.5 39 10-48 72-110 (293)
242 1vh6_A Flagellar protein FLIS; 53.8 23 0.00078 26.2 5.1 33 11-43 31-63 (145)
243 3qww_A SET and MYND domain-con 53.3 21 0.00073 30.8 5.7 36 8-43 377-412 (433)
244 4b4t_P 26S proteasome regulato 52.9 23 0.00079 30.6 5.9 115 10-125 134-257 (445)
245 2yhe_A SEC-alkyl sulfatase; hy 57.8 2.9 0.0001 38.7 0.0 46 12-57 460-505 (668)
246 2ond_A Cleavage stimulation fa 52.5 20 0.00068 28.3 5.1 34 10-43 200-233 (308)
247 3qwp_A SET and MYND domain-con 52.5 49 0.0017 28.4 7.8 47 7-53 365-416 (429)
248 3ttc_A HYPF, transcriptional r 52.3 5.5 0.00019 36.9 1.8 60 119-186 27-99 (657)
249 2rkl_A Vacuolar protein sortin 51.4 37 0.0013 20.8 4.9 32 11-42 18-49 (53)
250 3ly7_A Transcriptional activat 49.3 14 0.00047 31.8 3.7 36 10-45 274-309 (372)
251 2ooe_A Cleavage stimulation fa 48.2 1.3E+02 0.0043 25.6 11.7 40 8-48 8-47 (530)
252 3o10_A Sacsin; all-helical dom 46.1 19 0.00064 26.3 3.6 34 8-41 4-44 (141)
253 3mv2_B Coatomer subunit epsilo 45.8 35 0.0012 28.3 5.6 32 13-44 136-167 (310)
254 3vth_A Hydrogenase maturation 45.2 8.5 0.00029 36.2 1.9 60 119-186 121-193 (761)
255 3ly7_A Transcriptional activat 44.1 27 0.00091 29.9 4.7 42 6-47 289-344 (372)
256 1o3u_A Conserved hypothetical 43.4 85 0.0029 22.2 9.7 80 11-99 14-95 (135)
257 3n71_A Histone lysine methyltr 42.8 1.7E+02 0.0058 25.5 11.7 36 7-42 345-380 (490)
258 3rjv_A Putative SEL1 repeat pr 39.7 86 0.0029 23.1 6.7 33 13-45 85-121 (212)
259 1xi4_A Clathrin heavy chain; a 39.6 49 0.0017 33.8 6.3 82 14-96 1281-1366(1630)
260 1twf_L ABC10-alpha, DNA-direct 39.5 15 0.00051 23.9 1.9 29 137-185 26-54 (70)
261 2xze_A STAM-binding protein; h 39.5 41 0.0014 24.7 4.6 33 11-43 38-70 (146)
262 3mv2_B Coatomer subunit epsilo 39.4 73 0.0025 26.3 6.6 46 16-61 103-148 (310)
263 3u64_A Protein TP_0956; tetrat 39.3 38 0.0013 28.2 4.8 35 12-46 198-237 (301)
264 2con_A RUH-035 protein, NIN on 39.2 15 0.00053 24.4 1.9 20 166-185 16-39 (79)
265 3rjv_A Putative SEL1 repeat pr 38.6 41 0.0014 25.0 4.7 32 12-43 17-48 (212)
266 1ouv_A Conserved hypothetical 38.3 48 0.0016 25.1 5.1 33 13-45 146-182 (273)
267 1klx_A Cysteine rich protein B 38.1 50 0.0017 22.9 4.8 26 18-43 98-127 (138)
268 1hz4_A MALT regulatory protein 37.6 50 0.0017 26.3 5.3 35 12-46 134-168 (373)
269 2ooe_A Cleavage stimulation fa 36.8 19 0.00064 30.9 2.7 40 7-46 40-79 (530)
270 2lcq_A Putative toxin VAPC6; P 36.5 16 0.00054 27.1 1.9 9 177-185 149-157 (165)
271 4fx5_A VON willebrand factor t 36.5 40 0.0014 29.4 4.7 37 10-46 379-415 (464)
272 4fm3_A Uncharacterized hypothe 35.9 64 0.0022 22.3 4.8 30 11-40 32-61 (98)
273 1wig_A KIAA1808 protein; LIM d 34.8 35 0.0012 21.4 3.2 36 137-172 3-38 (73)
274 1klx_A Cysteine rich protein B 34.3 63 0.0022 22.3 4.8 30 13-42 57-90 (138)
275 4a3n_A Transcription factor SO 33.6 55 0.0019 20.1 4.0 42 85-130 14-55 (71)
276 3u3w_A Transcriptional activat 33.3 1.6E+02 0.0056 22.5 13.2 41 10-50 72-112 (293)
277 1wol_A ST0689, 122AA long cons 32.9 81 0.0028 21.7 5.1 74 11-97 9-82 (122)
278 2jpu_A ORF C02003 protein; sol 32.6 63 0.0021 23.4 4.5 31 11-41 5-35 (129)
279 3ga8_A HTH-type transcriptiona 32.4 7.2 0.00025 25.5 -0.6 42 140-184 3-44 (78)
280 2rpa_A Katanin P60 ATPase-cont 32.3 61 0.0021 21.3 4.0 31 11-41 10-40 (78)
281 4esj_A Type-2 restriction enzy 31.4 23 0.00078 28.7 2.1 30 139-183 34-63 (257)
282 3u64_A Protein TP_0956; tetrat 31.2 81 0.0028 26.2 5.5 39 7-45 217-272 (301)
283 3ffl_A Anaphase-promoting comp 30.5 86 0.003 23.7 5.1 35 11-45 61-95 (167)
284 1hz4_A MALT regulatory protein 29.9 86 0.0029 24.8 5.5 34 13-46 14-47 (373)
285 1ckt_A High mobility group 1 p 29.7 99 0.0034 18.9 5.0 42 87-130 15-56 (71)
286 1ufb_A TT1696 protein; structu 28.9 1.4E+02 0.0048 20.4 9.4 81 11-100 9-91 (127)
287 1ais_B TFB TFIIB, protein (tra 28.7 1.8E+02 0.0061 21.6 8.4 86 6-96 5-98 (200)
288 2p58_C Putative type III secre 28.5 27 0.00092 24.7 1.8 41 11-57 39-79 (116)
289 2kdx_A HYPA, hydrogenase/ureas 27.8 29 0.00099 24.4 2.0 13 138-150 72-84 (119)
290 2e5y_A ATP synthase epsilon ch 27.8 1.2E+02 0.0041 21.7 5.4 35 6-40 86-124 (133)
291 2hsb_A Hypothetical UPF0332 pr 27.6 1.1E+02 0.0038 20.9 5.1 31 11-41 10-40 (126)
292 1i11_A Transcription factor SO 27.2 95 0.0032 19.7 4.4 44 85-132 16-59 (81)
293 3mv2_A Coatomer subunit alpha; 27.0 1.1E+02 0.0037 25.7 5.6 34 15-48 208-242 (325)
294 4b4t_R RPN7, 26S proteasome re 26.7 77 0.0026 27.0 4.9 43 16-58 134-177 (429)
295 3pwf_A Rubrerythrin; non heme 26.5 42 0.0014 25.3 2.8 13 175-187 152-164 (170)
296 3u6p_A Formamidopyrimidine-DNA 26.1 48 0.0016 26.9 3.2 8 176-183 265-272 (273)
297 4bbr_M Transcription initiatio 25.7 1.2E+02 0.0042 25.2 5.8 84 7-96 123-215 (345)
298 2a9u_A Ubiquitin carboxyl-term 25.4 1.1E+02 0.0037 22.5 4.8 32 12-43 41-72 (144)
299 1hme_A High mobility group pro 25.3 1.3E+02 0.0043 18.8 4.7 42 85-130 18-59 (77)
300 2crj_A SWI/SNF-related matrix- 25.1 1.1E+02 0.0037 20.1 4.5 43 85-131 19-61 (92)
301 1b89_A Protein (clathrin heavy 24.7 1E+02 0.0035 27.0 5.3 41 16-56 210-250 (449)
302 2o8s_A AGR_C_984P; all alpha-h 24.6 20 0.00069 30.2 0.7 111 14-134 105-231 (323)
303 2ygr_A Uvrabc system protein A 24.4 34 0.0012 33.1 2.3 13 177-189 301-313 (993)
304 2rq6_A ATP synthase epsilon ch 24.4 1.4E+02 0.0046 21.5 5.2 35 6-40 85-126 (138)
305 3f27_D Transcription factor SO 24.4 90 0.0031 19.9 3.8 43 85-131 18-60 (83)
306 3dra_A Protein farnesyltransfe 24.4 68 0.0023 26.2 3.9 42 6-47 60-103 (306)
307 3h0g_L DNA-directed RNA polyme 24.3 57 0.0019 20.7 2.6 14 137-150 19-32 (63)
308 3cw2_K Translation initiation 23.9 54 0.0018 24.1 2.8 40 149-188 87-136 (139)
309 1ltl_A DNA replication initiat 23.8 38 0.0013 27.4 2.2 17 174-190 154-170 (279)
310 3mkr_B Coatomer subunit alpha; 23.4 1.4E+02 0.0047 25.0 5.6 32 16-47 200-232 (320)
311 2xzf_A Formamidopyrimidine-DNA 23.0 85 0.0029 25.3 4.2 8 177-184 263-270 (271)
312 3nm9_A HMG-D, high mobility gr 22.6 1.4E+02 0.0049 18.4 5.0 39 85-130 15-53 (73)
313 4abx_A DNA repair protein RECN 22.6 2.1E+02 0.0071 21.1 6.1 69 29-98 72-144 (175)
314 1wgf_A Upstream binding factor 22.5 74 0.0025 20.9 3.2 44 85-132 32-75 (90)
315 2d7l_A WD repeat and HMG-box D 22.3 59 0.002 21.2 2.5 44 85-131 17-60 (81)
316 4f3v_A ESX-1 secretion system 21.5 1.4E+02 0.0046 24.3 5.1 37 11-48 5-41 (282)
317 2ijq_A Hypothetical protein; s 21.4 1.4E+02 0.0047 22.3 4.8 49 13-61 74-129 (161)
318 1tfi_A Transcriptional elongat 21.4 50 0.0017 19.7 1.9 16 174-189 7-22 (50)
319 1vg5_A RSGI RUH-014, rhomboid 21.2 1.1E+02 0.0038 19.7 3.7 29 5-38 38-66 (73)
320 1wcr_A PTS system, N, N'-diace 21.0 95 0.0033 21.5 3.5 34 8-41 13-46 (103)
321 1ee8_A MUTM (FPG) protein; bet 20.9 1.5E+02 0.0053 23.7 5.3 10 177-186 256-265 (266)
322 2uwj_G Type III export protein 20.9 25 0.00087 24.8 0.5 41 11-57 38-78 (115)
323 3alr_A Nanos protein; zinc-fin 20.9 22 0.00076 24.9 0.2 43 139-187 36-82 (106)
324 3na7_A HP0958; flagellar bioge 20.8 36 0.0012 27.2 1.4 30 120-149 173-208 (256)
325 2rg8_A Programmed cell death p 20.8 1.7E+02 0.0057 21.7 5.1 109 10-132 6-119 (165)
326 2gnr_A Conserved hypothetical 20.7 84 0.0029 22.9 3.4 78 98-189 5-85 (145)
327 2wxu_A Phospholipase C; cytoly 20.6 1.5E+02 0.0051 25.3 5.3 33 10-42 95-127 (370)
328 1k99_A Upstream binding factor 20.4 2E+02 0.0068 19.1 5.4 44 85-132 22-65 (99)
329 1aqt_A ATP synthase; hydrolase 20.4 1.1E+02 0.0037 22.0 3.9 21 6-26 87-107 (138)
330 2e2a_A Protein (enzyme IIA); h 20.3 1E+02 0.0034 21.4 3.5 34 9-42 16-49 (105)
331 3k1s_A PTS system, cellobiose- 20.1 1E+02 0.0034 21.6 3.5 35 8-42 17-51 (109)
No 1
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.90 E-value=2.5e-24 Score=167.05 Aligned_cols=110 Identities=25% Similarity=0.377 Sum_probs=88.6
Q ss_pred cccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCch-------HHHHHHHHHHHHHHcCCCchhhhhhhhhhh--
Q 048108 64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVA-------ADGAFKLIRSANNVLTDPGKRKAFDNRIRL-- 134 (193)
Q Consensus 64 ~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~-------a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~-- 134 (193)
...|||+|||| +++++.++||++||+|++++|||+++... +.+.|+.|++||++|+||.+|+.||..+..
T Consensus 8 ~~~~~y~iLgv-~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~~ 86 (155)
T 2l6l_A 8 PKKDWYSILGA-DPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCEDD 86 (155)
T ss_dssp CCSHHHHHHTC-CTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHHH
T ss_pred CCCChhHhcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchhh
Confidence 45899999999 99999999999999999999999987542 578999999999999999999999987643
Q ss_pred ---------------------cccccccCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCCcceEec
Q 048108 135 ---------------------NKVKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRRKIVIL 190 (193)
Q Consensus 135 ---------------------~~~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~~~~v~~ 190 (193)
...||+.|+ |+..+. +.+...+.. ..+.|++|+.-=.|+.
T Consensus 87 ~~~~~~~~~~~~~~~m~~~e~~~~f~~~Cr-CG~~f~------i~~~~l~~~---------~~v~C~sCSl~~~v~~ 147 (155)
T 2l6l_A 87 LRNVGPVDAQVYLEEMSWNEGDHSFYLSCR-CGGKYS------VSKDEAEEV---------SLISCDTCSLIIELLH 147 (155)
T ss_dssp HHTTCSSSEEEETTTSEEETTTTEEEEECS-SSCEEE------EETTHHHHC---------CEEECSSSSCEEEEEC
T ss_pred ccccccccceeeHHHhccccCCcEEEEcCC-CCCeEE------ecHHHhCCC---------CEEECCCCceEEEEEE
Confidence 346889996 997776 444433210 4577888877666654
No 2
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.86 E-value=4e-22 Score=137.33 Aligned_cols=68 Identities=35% Similarity=0.526 Sum_probs=65.4
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
.|||+|||| +++++.++||++|+++++++|||+++.+.+.+.|+.|++||++|+||.+|..||..+..
T Consensus 3 ~~~y~iLgv-~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 70 (77)
T 1hdj_A 3 KDYYQTLGL-ARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEE 70 (77)
T ss_dssp CCSHHHHTC-CTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGG
T ss_pred CCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccc
Confidence 689999999 99999999999999999999999999888999999999999999999999999998864
No 3
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=3.4e-22 Score=138.01 Aligned_cols=71 Identities=35% Similarity=0.535 Sum_probs=66.9
Q ss_pred ccccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 63 ETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 63 ~~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
....|||+|||| +++++.++||++|+++++++|||+++.+++.+.|+.|++||++|+||.+|..||..+..
T Consensus 4 ~~~~~~y~iLgv-~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 74 (78)
T 2ctp_A 4 GSSGDYYEILGV-SRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSG 74 (78)
T ss_dssp SCSCCHHHHHTC-CTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSC
T ss_pred CCCCCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence 345899999999 99999999999999999999999999889999999999999999999999999998764
No 4
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=8.8e-22 Score=139.10 Aligned_cols=70 Identities=34% Similarity=0.538 Sum_probs=66.7
Q ss_pred cccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 64 ~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
...|||+|||| +++++.++||++||+|++++|||+++.+.+.+.|+.|++||++|+||.+|..||..+..
T Consensus 5 ~~~~~y~iLgv-~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (88)
T 2ctr_A 5 SSGSYYDILGV-PKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHS 74 (88)
T ss_dssp CCCSHHHHHTC-CTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHH
T ss_pred CCCCHHHHcCc-CCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence 45899999999 99999999999999999999999999888999999999999999999999999998864
No 5
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-21 Score=135.68 Aligned_cols=71 Identities=30% Similarity=0.404 Sum_probs=65.7
Q ss_pred ccccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 63 ETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 63 ~~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
....|||+|||| +++++.++||++||+|++++|||+++ .+.+.+.|+.|++||++|+||.+|..||..+..
T Consensus 4 ~~~~~~y~iLgv-~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 75 (79)
T 2dn9_A 4 GSSGDYYQILGV-PRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSG 75 (79)
T ss_dssp SCCSCHHHHHTC-CTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCC
T ss_pred CCCCCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCc
Confidence 345899999999 99999999999999999999999998 477899999999999999999999999998753
No 6
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=1.3e-21 Score=138.27 Aligned_cols=69 Identities=30% Similarity=0.439 Sum_probs=66.0
Q ss_pred ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
..|||+|||| +++++.++||++||++++++|||+++.+.+.+.|+.|++||++|+||.+|..||..+..
T Consensus 16 ~~d~y~iLgv-~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 84 (88)
T 2cug_A 16 DFDPYRVLGV-SRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSG 84 (88)
T ss_dssp SSCHHHHHTC-CTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred CCCHHHHcCc-CCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCC
Confidence 4899999999 99999999999999999999999999889999999999999999999999999998864
No 7
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.8e-21 Score=134.56 Aligned_cols=69 Identities=35% Similarity=0.524 Sum_probs=64.1
Q ss_pred cccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCc--hHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108 64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSV--AADGAFKLIRSANNVLTDPGKRKAFDNRIR 133 (193)
Q Consensus 64 ~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~--~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 133 (193)
...|||+|||| +++++.++||++||++++++|||+++.. .+.+.|+.|++||++|+||.+|..||..+.
T Consensus 7 ~~~~~y~iLgv-~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 77 (82)
T 2ej7_A 7 GMVDYYEVLDV-PRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGS 77 (82)
T ss_dssp SSCCHHHHTTC-CTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCC
T ss_pred CCcCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 34899999999 9999999999999999999999999753 678899999999999999999999999875
No 8
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.84 E-value=2.3e-21 Score=138.24 Aligned_cols=69 Identities=30% Similarity=0.491 Sum_probs=64.2
Q ss_pred ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-------chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS-------VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~-------~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
..|||+|||| +++++.++||++||+|++++|||+++. +.+.+.|+.|++||++|+||.+|..||..+..
T Consensus 15 ~~~~y~iLgv-~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 90 (94)
T 1wjz_A 15 KKDWYSILGA-DPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG 90 (94)
T ss_dssp CSCHHHHTTC-CTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred CCChHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence 4899999999 999999999999999999999999873 56789999999999999999999999998864
No 9
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.84 E-value=4.1e-21 Score=131.01 Aligned_cols=66 Identities=36% Similarity=0.620 Sum_probs=61.2
Q ss_pred ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108 65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIR 133 (193)
Q Consensus 65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 133 (193)
..|||+|||| +++++.++||++|+++++++|||+++. +.+.|+.|++||++|+||.+|..||..+.
T Consensus 7 ~~~~y~iLgl-~~~a~~~eIk~ayr~l~~~~HPD~~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 7 ETGYYDVLGV-KPDASDNELKKAYRKMALKFHPDKNPD--GAEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp CCCHHHHHTC-CTTCCHHHHHHHHHHHHHHTCTTTCTT--CHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred CCCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCcC--HHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 4799999999 999999999999999999999999974 36899999999999999999999999874
No 10
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=4.2e-21 Score=138.49 Aligned_cols=70 Identities=27% Similarity=0.474 Sum_probs=65.4
Q ss_pred cccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 64 ~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
...|||+|||| +++++.++||++||+|++++|||+++ .+.+.+.|+.|++||++|+||.+|..||..+..
T Consensus 15 ~~~~~Y~vLgv-~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 85 (99)
T 2yua_A 15 SRTALYDLLGV-PSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLS 85 (99)
T ss_dssp CSSHHHHHHTC-CTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCC
T ss_pred CccCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccc
Confidence 45899999999 99999999999999999999999996 577899999999999999999999999997754
No 11
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=5.4e-21 Score=140.87 Aligned_cols=70 Identities=29% Similarity=0.435 Sum_probs=66.3
Q ss_pred cccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 64 ~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
...|||+|||| +++++.++||++||+|++++|||+++ .+.+.+.|+.|++||++|+||.+|..||..+..
T Consensus 18 ~~~d~Y~iLgv-~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 88 (112)
T 2ctq_A 18 DTEDYYTLLGC-DELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRS 88 (112)
T ss_dssp CCCCHHHHTTC-CTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred CCCCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhh
Confidence 45899999999 99999999999999999999999998 578999999999999999999999999999875
No 12
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=9.9e-21 Score=134.64 Aligned_cols=70 Identities=34% Similarity=0.520 Sum_probs=64.7
Q ss_pred cccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC--chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS--VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 64 ~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~--~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
...|||+|||| +++++.++||++||+|++++|||+++. +.+++.|+.|++||++|+||.+|..||..+..
T Consensus 7 ~~~~~y~iLgv-~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 78 (92)
T 2dmx_A 7 GMANYYEVLGV-QASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCD 78 (92)
T ss_dssp CCCCHHHHHTC-CTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSC
T ss_pred CCcCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence 34899999999 999999999999999999999999975 36789999999999999999999999998753
No 13
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-20 Score=135.74 Aligned_cols=68 Identities=35% Similarity=0.517 Sum_probs=63.6
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCc--hHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSV--AADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~--~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
.|||+|||| +++++.++||++||++++++|||+++.. .+.+.|+.|++||++|+||.+|..||..+..
T Consensus 2 ~d~Y~iLgv-~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~ 71 (99)
T 2lgw_A 2 ASYYEILDV-PRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGRE 71 (99)
T ss_dssp CCHHHHSSS-CTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred CCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence 589999999 9999999999999999999999999753 4789999999999999999999999998864
No 14
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=2.3e-20 Score=136.89 Aligned_cols=70 Identities=39% Similarity=0.605 Sum_probs=65.3
Q ss_pred cccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 64 ~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
...|||+|||| +++++.++||++||+|++++|||+++ .+.+.+.|+.|++||++|+||.+|..||..+..
T Consensus 15 ~~~~~Y~vLgv-~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~ 85 (109)
T 2ctw_A 15 SGESLYHVLGL-DKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSL 85 (109)
T ss_dssp CSCCHHHHHTC-CTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHH
T ss_pred CCCCHHHHcCc-CCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccc
Confidence 34899999999 99999999999999999999999997 467889999999999999999999999988764
No 15
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.81 E-value=8.3e-21 Score=137.81 Aligned_cols=68 Identities=35% Similarity=0.582 Sum_probs=64.7
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
.|||+|||| +++++.++||++||+|++++|||+++ .+.+++.|+.|++||++|+||.+|..||..+..
T Consensus 3 ~~~y~iLgv-~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (103)
T 1bq0_A 3 QDYYEILGV-SKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA 71 (103)
T ss_dssp CCSTTTTSS-CSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTT
T ss_pred CCHHHHcCc-CCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhh
Confidence 699999999 99999999999999999999999998 477899999999999999999999999998875
No 16
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.81 E-value=1.4e-20 Score=137.94 Aligned_cols=71 Identities=21% Similarity=0.418 Sum_probs=65.8
Q ss_pred ccchhhhhcCCCCCC-CHHHHHHHHHHHHHhcCCCCCCC----chHHHHHHHHHHHHHHcCCCchhhhhhhhhhhcc
Q 048108 65 KSTLYKILAITDPQV-DISVIKKQFKKMALMLHPDKNSS----VAADGAFKLIRSANNVLTDPGKRKAFDNRIRLNK 136 (193)
Q Consensus 65 ~~d~Y~vLgv~~~~a-~~~~Ik~aYr~l~~~~HPDk~~~----~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~~~ 136 (193)
..|||+|||| ++++ +.++||++||++++++|||+++. +.+.+.|+.|++||++|+||.+|..||..+..+.
T Consensus 14 ~~~~y~iLgv-~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~~ 89 (109)
T 2qsa_A 14 LENCYDVLEV-NREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHPD 89 (109)
T ss_dssp TSCHHHHTTC-CGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCTT
T ss_pred CCCHHHHcCC-CCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCch
Confidence 4899999999 9999 99999999999999999999986 5678999999999999999999999999987533
No 17
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.9e-20 Score=132.34 Aligned_cols=67 Identities=34% Similarity=0.569 Sum_probs=62.2
Q ss_pred ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
..|||+|||| +++++.++||++||+|++++|||+++. ..+.|+.|++||++|+||.+|..||..+..
T Consensus 7 ~~~~y~iLgv-~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 73 (92)
T 2o37_A 7 ETKLYDLLGV-SPSANEQELKKGYRKAALKYHPDKPTG--DTEKFKEISEAFEILNDPQKREIYDQYGLE 73 (92)
T ss_dssp CCHHHHHHTC-CTTCCHHHHHHHHHHHHHHHCTTSTTC--CHHHHHHHHHHHHHHTSHHHHHHHHHHCHH
T ss_pred CCCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCC--hHHHHHHHHHHHHHHCCHHHHHHHHHHCHH
Confidence 4799999999 999999999999999999999999864 357999999999999999999999998865
No 18
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=6.4e-20 Score=130.15 Aligned_cols=62 Identities=26% Similarity=0.471 Sum_probs=59.2
Q ss_pred ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhh
Q 048108 65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKA 127 (193)
Q Consensus 65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~ 127 (193)
..|||+|||| +++++.++||++||+|++++|||+++.+++.++|+.|++||++|+||.+|..
T Consensus 26 ~~~~y~iLgv-~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 26 SKDSWDMLGV-KPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp CSSHHHHHTC-CTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCCHHHHcCc-CCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence 4899999999 9999999999999999999999999988999999999999999999998864
No 19
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.75 E-value=7.2e-19 Score=140.88 Aligned_cols=68 Identities=37% Similarity=0.555 Sum_probs=64.5
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
.|||+|||| +++|+.++||++||+|++++|||+++ .+.+.++|+.|++||++|+||.+|+.||..+..
T Consensus 2 ~~~y~~l~~-~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~ 70 (210)
T 3apq_A 2 QNFYSLLGV-SKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEK 70 (210)
T ss_dssp CCHHHHHTC-CTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTT
T ss_pred CCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccc
Confidence 589999999 99999999999999999999999996 578899999999999999999999999998865
No 20
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.74 E-value=1.6e-18 Score=136.95 Aligned_cols=69 Identities=20% Similarity=0.328 Sum_probs=62.3
Q ss_pred ccchhhhhcCCCCCCC--HHHHHHHHHHHHHhcCCCCCCCch------HHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 65 KSTLYKILAITDPQVD--ISVIKKQFKKMALMLHPDKNSSVA------ADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 65 ~~d~Y~vLgv~~~~a~--~~~Ik~aYr~l~~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
..|||+|||| +++++ .++||++||+|++++|||+++... +.+.|..|++||++|+||.+|..||..+..
T Consensus 3 ~~d~Y~iLgl-~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g 79 (174)
T 3hho_A 3 AMNYFELFGL-PIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQG 79 (174)
T ss_dssp -CCHHHHTTC-CSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTT
T ss_pred CCCHHHHcCc-CCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHccC
Confidence 4799999999 88887 999999999999999999987543 568899999999999999999999988764
No 21
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.73 E-value=4.6e-18 Score=145.76 Aligned_cols=122 Identities=30% Similarity=0.393 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHHHH
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQF 88 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~aY 88 (193)
+++.+..+..+|..++..|+++.|+..++++..++|+...+...+..+..........++|.+||+ .+.++.++|+++|
T Consensus 325 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~-~~~~~~~~~~~~y 403 (450)
T 2y4t_A 325 EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV-KRNAKKQEIIKAY 403 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS-STTCCTTHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCC-CccCCHHHHHHHH
Confidence 455567788889999999999999999999999999998888888888877777778899999999 9999999999999
Q ss_pred HHHHHhcCCCCCCCch----HHHHHHHHHHHHHHcCCCchhhhhhhh
Q 048108 89 KKMALMLHPDKNSSVA----ADGAFKLIRSANNVLTDPGKRKAFDNR 131 (193)
Q Consensus 89 r~l~~~~HPDk~~~~~----a~~~f~~i~~Ay~vLsd~~~R~~YD~~ 131 (193)
+++++++|||+.+.+. +++.|+.|++||++|+||++|..||++
T Consensus 404 ~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~g 450 (450)
T 2y4t_A 404 RKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDG 450 (450)
T ss_dssp HHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC------
T ss_pred HHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccCC
Confidence 9999999999998654 788999999999999999999999974
No 22
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.73 E-value=2.9e-19 Score=132.05 Aligned_cols=65 Identities=17% Similarity=0.202 Sum_probs=60.1
Q ss_pred ccchhhhhcCCCCCCCH--HHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108 65 KSTLYKILAITDPQVDI--SVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIR 133 (193)
Q Consensus 65 ~~d~Y~vLgv~~~~a~~--~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 133 (193)
..|||+|||| +++++. ++||++||+|++++|||+++. .++|+.|++||+||+||.+|+.||.++.
T Consensus 7 ~~~~Y~iLgv-~~~as~~~~eIk~aYr~la~~~HPDk~~~---~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 7 SLQLMDLLGL-ERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHHHHHTTC-CTTSCSCHHHHHHHHHHTTTTCCTTTCCT---TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred hhhHHHHcCC-CCCCCcCHHHHHHHHHHHHHHHCCCCCcc---HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 3799999999 999999 999999999999999999875 4799999999999999999999997653
No 23
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.72 E-value=2.4e-19 Score=141.33 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=59.4
Q ss_pred cccccchhhhhcCCCCCCC--HHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108 62 SETKSTLYKILAITDPQVD--ISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIR 133 (193)
Q Consensus 62 ~~~~~d~Y~vLgv~~~~a~--~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 133 (193)
.+...|||+|||| +++|+ .++||+|||++++++|||++++ +++|+.|++||++|+||.+|+.||+.+.
T Consensus 7 ~~~~~d~Y~vLGl-~~~as~~~~eIKkAYRkLa~~~HPDk~~~---~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 7 REESLQLMDLLGL-ERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHHHHTTTC-CGGGTTCHHHHHHHHHHHGGGCSCC---C---CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccccccHHHHcCC-CCCCCcCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 3445799999999 99998 5999999999999999999875 3799999999999999999999999885
No 24
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.72 E-value=6e-19 Score=128.79 Aligned_cols=80 Identities=21% Similarity=0.375 Sum_probs=66.9
Q ss_pred HHhCCCCc-cHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCc--------hHHHHHH
Q 048108 40 KEFNPDLP-NIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSV--------AADGAFK 110 (193)
Q Consensus 40 ~~l~p~~~-~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~--------~a~~~f~ 110 (193)
..+.+..+ .|+++|..+...+... .|||+|||+ +. |+.++||++||++++++||||++.+ .++++|+
T Consensus 16 ~~W~~~~~~~ir~lL~~l~~~l~~~--~d~Y~vl~~-~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~ 91 (106)
T 3ag7_A 16 RKWSSGKSGNIRSLLSTLQYILWSG--SGWKPVPLM-DM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFE 91 (106)
T ss_dssp HHHHTTTTTCHHHHHTTGGGTSCTT--SCCCCCCGG-GS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHhccc--CCHHHHcCC-CC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHH
Confidence 33444433 5999999988776655 799999999 86 9999999999999999999997642 3588999
Q ss_pred HHHHHHHHcCCCc
Q 048108 111 LIRSANNVLTDPG 123 (193)
Q Consensus 111 ~i~~Ay~vLsd~~ 123 (193)
.|++||++|+|+.
T Consensus 92 ~I~~AYevLsd~~ 104 (106)
T 3ag7_A 92 LLQEAWDHFNTLG 104 (106)
T ss_dssp HHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCcc
Confidence 9999999999986
No 25
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.72 E-value=1.2e-18 Score=123.92 Aligned_cols=73 Identities=21% Similarity=0.251 Sum_probs=64.8
Q ss_pred CccHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCc----hHHHHHHHHHHHHHHcCC
Q 048108 46 LPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSV----AADGAFKLIRSANNVLTD 121 (193)
Q Consensus 46 ~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~----~a~~~f~~i~~Ay~vLsd 121 (193)
...|+.+|..++..+... .++|++||| ++.++.++||+|||++++++|||+++.. .++++|+.|++||++|.+
T Consensus 15 ~~~ir~lL~~l~~~L~~~--~~~y~~Lgv-~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 15 ERNIRALLSTMHTVLWAG--ETKWKPVGM-ADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp TTCHHHHHHHGGGTSCTT--CCSCCCCCG-GGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccc--ccCCeecCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 346899999999888764 589999999 9999999999999999999999998753 278899999999999964
No 26
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.71 E-value=1.2e-18 Score=138.08 Aligned_cols=80 Identities=21% Similarity=0.330 Sum_probs=70.0
Q ss_pred CccHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCch----HHHHHHHHHHHHHHcCC
Q 048108 46 LPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVA----ADGAFKLIRSANNVLTD 121 (193)
Q Consensus 46 ~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~----a~~~f~~i~~Ay~vLsd 121 (193)
...|+.+|..+...+... .|||+|||| ++.++.++||++||++++++|||+++... +++.|+.|++||++|+|
T Consensus 99 ~~niRaLLssl~~vl~~~--~d~Y~vLgv-~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD 175 (182)
T 1n4c_A 99 ERNIRALLSTMHTVLWAG--ETKWKPVGM-ADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 175 (182)
T ss_dssp TTCHHHHHHHGGGGSCTT--CCCCCCCCG-GGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCc--cchhhcCCC-CCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCC
Confidence 345888888877555443 699999999 99999999999999999999999987543 78899999999999999
Q ss_pred Cchhhhh
Q 048108 122 PGKRKAF 128 (193)
Q Consensus 122 ~~~R~~Y 128 (193)
|.+|..|
T Consensus 176 ~~kR~~Y 182 (182)
T 1n4c_A 176 QGQKPLY 182 (182)
T ss_dssp HHSSCCC
T ss_pred HHhhhhC
Confidence 9999887
No 27
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.71 E-value=5.1e-19 Score=152.36 Aligned_cols=68 Identities=29% Similarity=0.510 Sum_probs=0.0
Q ss_pred ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108 65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIR 133 (193)
Q Consensus 65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 133 (193)
..|||+|||| +++|+.++||+|||+|+++||||+++.+.++++|++|++||++|+||.+|+.||+++.
T Consensus 27 ~~d~Y~vLgv-~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 94 (329)
T 3lz8_A 27 LKDYYAILGV-QPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ 94 (329)
T ss_dssp ---------------------------------------------------------------------
T ss_pred ccCHHHHcCc-CCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence 4799999999 9999999999999999999999999888899999999999999999999999999854
No 28
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.71 E-value=5.6e-18 Score=133.43 Aligned_cols=68 Identities=19% Similarity=0.254 Sum_probs=61.5
Q ss_pred cchhhhhcCCCCCC--CHHHHHHHHHHHHHhcCCCCCCCch------HHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 66 STLYKILAITDPQV--DISVIKKQFKKMALMLHPDKNSSVA------ADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a--~~~~Ik~aYr~l~~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
.|||+|||| ++++ +..+||++||+|++++|||+++... +.+.|..|++||++|+||.+|..||..+..
T Consensus 1 ~d~y~lLgl-~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g 76 (171)
T 1fpo_A 1 MDYFTLFGL-PARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHG 76 (171)
T ss_dssp CHHHHHTTC-CSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTT
T ss_pred CCHHHHCCC-CCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcC
Confidence 489999999 9888 9999999999999999999987532 457899999999999999999999998763
No 29
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.71 E-value=2.6e-18 Score=119.04 Aligned_cols=63 Identities=22% Similarity=0.364 Sum_probs=56.8
Q ss_pred ccccchhhhhcCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhh
Q 048108 63 ETKSTLYKILAITDPQ--VDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFD 129 (193)
Q Consensus 63 ~~~~d~Y~vLgv~~~~--a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD 129 (193)
+...++|+|||| +++ ++.++||++||+|++++|||++++ .++|+.|++||++|+|+.+|..++
T Consensus 8 ~~~~~~y~iLgl-~~~~~a~~~eIk~aYr~la~~~HPDk~~~---~~~f~~i~~AYe~L~~~~~r~~~~ 72 (79)
T 1faf_A 8 ADKERLLELLKL-PRQLWGDFGRMQQAYKQQSLLLHPDKGGS---HALMQELNSLWGTFKTEVYNLRMN 72 (79)
T ss_dssp HHHHHHHHHHTC-CSSSTTCHHHHHHHHHHHHHHSSGGGSCC---HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHcCC-CCCCCCCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHHhhHHHHHHHh
Confidence 344789999999 999 999999999999999999999853 589999999999999999998844
No 30
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.70 E-value=4.4e-18 Score=120.24 Aligned_cols=60 Identities=23% Similarity=0.264 Sum_probs=55.3
Q ss_pred cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC--chHHHHHHHHHHHHHHcCCCchhh
Q 048108 66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS--VAADGAFKLIRSANNVLTDPGKRK 126 (193)
Q Consensus 66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~--~~a~~~f~~i~~Ay~vLsd~~~R~ 126 (193)
.++|+|||| +++++.++||++||+|+++||||+++. +.++++|+.|++||++|+|...|.
T Consensus 16 ~~~y~vLgv-~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~ 77 (88)
T 1iur_A 16 KEVTSVVEQ-AWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLD 77 (88)
T ss_dssp HHHHHHHHH-TTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHhCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccc
Confidence 789999999 999999999999999999999999986 347899999999999999977663
No 31
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.69 E-value=1.6e-17 Score=134.50 Aligned_cols=69 Identities=16% Similarity=0.349 Sum_probs=60.9
Q ss_pred cccchhhhhcCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCch------HHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108 64 TKSTLYKILAITDPQ--VDISVIKKQFKKMALMLHPDKNSSVA------ADGAFKLIRSANNVLTDPGKRKAFDNRIR 133 (193)
Q Consensus 64 ~~~d~Y~vLgv~~~~--a~~~~Ik~aYr~l~~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 133 (193)
...|||+|||| +++ ++.++||++||+|++++|||+++... +.+.|+.|++||+||+||.+|..||..+.
T Consensus 41 ~~~d~y~lLgv-~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~ 117 (207)
T 3bvo_A 41 PTRDYFSLMDC-NRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLH 117 (207)
T ss_dssp TTCCHHHHTTS-CSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCCHHHHcCC-CCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence 45899999999 765 79999999999999999999987532 45679999999999999999999998765
No 32
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.65 E-value=2.5e-17 Score=130.83 Aligned_cols=69 Identities=20% Similarity=0.383 Sum_probs=61.3
Q ss_pred cccccchhhhh------cCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhh
Q 048108 62 SETKSTLYKIL------AITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRI 132 (193)
Q Consensus 62 ~~~~~d~Y~vL------gv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~ 132 (193)
.....|||+|| |+++.+++.++||++||+|++++|||+++. +.+.|..|++||++|+||.+|..||..+
T Consensus 7 ~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~--a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 7 RRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS--CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc--HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 34458999999 462348999999999999999999999975 6788999999999999999999999987
No 33
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.64 E-value=6e-17 Score=109.89 Aligned_cols=56 Identities=25% Similarity=0.316 Sum_probs=51.1
Q ss_pred cchhhhhcCCCC-CCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchh
Q 048108 66 STLYKILAITDP-QVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKR 125 (193)
Q Consensus 66 ~d~Y~vLgv~~~-~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R 125 (193)
.++|+|||| ++ +++.++||++||+|++++|||++++ .+.|+.|++||++|+|+..|
T Consensus 14 ~~~y~iLgl-~~~~a~~~eIk~ayr~l~~~~HPDk~g~---~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 14 KEALQILNL-TENTLTKKKLKEVHRKIMLANHPDKGGS---PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHTTC-CTTTCCHHHHHHHHHHHHHHHCGGGTCC---HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCC-CCCCCCHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHhhhhhc
Confidence 689999999 88 7999999999999999999999743 46999999999999998765
No 34
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.55 E-value=3.7e-16 Score=146.65 Aligned_cols=70 Identities=36% Similarity=0.540 Sum_probs=40.7
Q ss_pred cccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108 64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 64 ~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
...|||+|||| +++|+.++||++||+|++++|||+++ .+.+.++|+.|++||++|+||.+|+.||+.+..
T Consensus 19 ~~~~~y~~lg~-~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~ 89 (780)
T 3apo_A 19 HDQNFYSLLGV-SKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEK 89 (780)
T ss_dssp ----CHHHHTC-CTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC---
T ss_pred CCCCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccc
Confidence 34899999999 99999999999999999999999985 577889999999999999999999999998864
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.95 E-value=7.5e-10 Score=73.49 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=44.4
Q ss_pred chhhhhcCCCCC---CCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcC
Q 048108 67 TLYKILAITDPQ---VDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLT 120 (193)
Q Consensus 67 d~Y~vLgv~~~~---a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLs 120 (193)
+-|.|||| +++ ++.++|+++||+|...+|||+++++ .....|++|+++|.
T Consensus 5 EA~~ILgv-~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~---yl~~ki~~Ake~l~ 57 (65)
T 2guz_B 5 ESCKILNI-EESKGDLNMDKINNRFNYLFEVNDKEKGGSF---YLQSKVYRAAERLK 57 (65)
T ss_dssp HHHHHTTC-CGGGTCCSHHHHHHHHHHHHHHTCGGGTCCH---HHHHHHHHHHHHHH
T ss_pred HHHHHhCC-CCCcCcCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHHH
Confidence 45899999 888 9999999999999999999998654 66778999999985
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.85 E-value=8.9e-06 Score=75.12 Aligned_cols=105 Identities=15% Similarity=0.075 Sum_probs=76.3
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH-------------------HHHHHHHHH-------
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID-------------------DYFTACRVH------- 59 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~-------------------~~l~~~~~~------- 59 (193)
.+.|++.+..+..+|..++..|++++|+..+++|.+++|....+. ++-.+.+.+
T Consensus 527 l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 606 (681)
T 2pzi_A 527 WSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTE 606 (681)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTS
T ss_pred HHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCc
Confidence 344566778899999999999999999999999999999843211 111111110
Q ss_pred ----------------hhcccccchhhhhcCCCCCCCH--HHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHH
Q 048108 60 ----------------QLSETKSTLYKILAITDPQVDI--SVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNV 118 (193)
Q Consensus 60 ----------------~~~~~~~d~Y~vLgv~~~~a~~--~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~v 118 (193)
...+.++|||.+||+ +.+... .+|+++||++++..+++ .+++..|..|+.|
T Consensus 607 ~~~~~l~~~ll~~~l~~~~~~~~~~~~~lG~-~~~~~~lr~~~~~ayr~la~~~~~~-------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 607 PRVLQIRALVLGGALDWLKDNKASTNHILGF-PFTSHGLRLGVEASLRSLARVAPTQ-------RHRYTLVDMANKV 675 (681)
T ss_dssp TTHHHHHHHHHHHHHHHHTSCCCSSSEETTE-ESSHHHHHHHHHHHHHHHHHHCSSH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCcccCCC-CCChHHHHHHHHHHHHHHHHhCCCh-------HHHHHHHHHhccc
Confidence 012345789999999 665544 67999999999966544 5788899988876
No 37
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.30 E-value=0.0055 Score=43.79 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=40.3
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID 50 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~ 50 (193)
..|++.|+.+.+++..+++.|+|++|+..+.+|..++|....+-
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 50 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILY 50 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 46899999999999999999999999999999999999986433
No 38
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.75 E-value=0.004 Score=45.71 Aligned_cols=51 Identities=14% Similarity=0.123 Sum_probs=42.9
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTAC 56 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~ 56 (193)
.+.+++.+...+.+|..++..|+++.|+..+.++.+++|+...+-..+..+
T Consensus 24 ~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 74 (150)
T 4ga2_A 24 TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLL 74 (150)
T ss_dssp SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 456788889999999999999999999999999999999986554444443
No 39
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.62 E-value=0.017 Score=41.12 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
.+.|..+.+++..+++.|+|+.|+..+.+|..++|+...
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~ 43 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNIT 43 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 578899999999999999999999999999999998753
No 40
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.0096 Score=41.47 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
+.|+.+..+|..++..|++++|+..+.++..++|....+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 40 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG 40 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 468899999999999999999999999999999987543
No 41
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.43 E-value=0.066 Score=39.74 Aligned_cols=49 Identities=6% Similarity=-0.013 Sum_probs=43.4
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108 2 WRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID 50 (193)
Q Consensus 2 ~~~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~ 50 (193)
++-..+.+++.++.+..+|..++..|++++|+..+.++..++|....+-
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~ 73 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYI 73 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3455778899999999999999999999999999999999999986433
No 42
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.30 E-value=0.003 Score=45.24 Aligned_cols=82 Identities=13% Similarity=0.078 Sum_probs=55.9
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhc--ccccchhhhhcCCCCCCCHHH
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLS--ETKSTLYKILAITDPQVDISV 83 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~--~~~~d~Y~vLgv~~~~a~~~~ 83 (193)
++.++..+..+..+|..++..|+++.|+..+.++..++|+...+--.+..+-..+.. +....|-++|.+ .|+- .+
T Consensus 40 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l-~P~~--~~ 116 (126)
T 4gco_A 40 VKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV-DPSN--EE 116 (126)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC--HH
T ss_pred HHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CcCC--HH
Confidence 445677788999999999999999999999999999999986443333333322211 122667778888 6643 34
Q ss_pred HHHHHHH
Q 048108 84 IKKQFKK 90 (193)
Q Consensus 84 Ik~aYr~ 90 (193)
++....+
T Consensus 117 a~~~l~~ 123 (126)
T 4gco_A 117 AREGVRN 123 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 43
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.044 Score=36.48 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
.++.+..+|..++..|++++|+..+.++..++|....
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 39 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPV 39 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Confidence 5788999999999999999999999999999998753
No 44
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.99 E-value=0.0048 Score=45.24 Aligned_cols=69 Identities=12% Similarity=0.063 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhc--ccccchhhhhcCCCCC
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLS--ETKSTLYKILAITDPQ 78 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~--~~~~d~Y~vLgv~~~~ 78 (193)
++..+..+.++|..++..|+++.|+.++.++..++|....+--.+..+-..+.. ....+|-++|.+ .|+
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-~p~ 129 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN-HPA 129 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CGG
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc-CCC
Confidence 456678889999999999999999999999999999875433323322222111 112567778888 665
No 45
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=95.82 E-value=0.0092 Score=43.74 Aligned_cols=42 Identities=14% Similarity=0.144 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
.+...+..+..+|..++..|+++.|+..+.++..++|....+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 47 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIY 47 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHH
Confidence 456788999999999999999999999999999999987543
No 46
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=95.79 E-value=0.012 Score=41.91 Aligned_cols=45 Identities=13% Similarity=0.054 Sum_probs=38.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID 50 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~ 50 (193)
++.+++.+..+.++|..++..|++++|+.++.++..++|......
T Consensus 35 l~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 79 (127)
T 4gcn_A 35 IELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADY 79 (127)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhh
Confidence 455677788899999999999999999999999999999765433
No 47
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=95.66 E-value=0.011 Score=44.15 Aligned_cols=44 Identities=9% Similarity=-0.124 Sum_probs=38.5
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID 50 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~ 50 (193)
+.+++.+..+..+|..++..|++++|+..+.+|..++|..+.+-
T Consensus 64 ~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 64 IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 44667788899999999999999999999999999999986443
No 48
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.47 E-value=0.0067 Score=46.51 Aligned_cols=53 Identities=11% Similarity=-0.145 Sum_probs=44.6
Q ss_pred cCCHHHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 048108 7 NLVKLAAEKA----RDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVH 59 (193)
Q Consensus 7 e~~~~ea~~~----~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~ 59 (193)
|.+++.+..+ .++|..+...|++++|+..|.+|..++|.+.+|..-+..+...
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~ 148 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV 148 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 4578888889 9999999999999999999999999999987765555555433
No 49
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.44 E-value=0.058 Score=38.52 Aligned_cols=49 Identities=16% Similarity=0.043 Sum_probs=42.0
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108 2 WRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID 50 (193)
Q Consensus 2 ~~~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~ 50 (193)
++...+.+++.+..+..+|..++..|++++|+..+.++..++|....+-
T Consensus 7 l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 55 (142)
T 2xcb_A 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYF 55 (142)
T ss_dssp --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHH
Confidence 3445677899999999999999999999999999999999999876433
No 50
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.43 E-value=0.026 Score=38.27 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
+++.+..+..+|..++..|+++.|+..+.++.+++|....+
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 43 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGT 43 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence 46677889999999999999999999999999999998643
No 51
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.35 E-value=0.011 Score=43.38 Aligned_cols=85 Identities=12% Similarity=0.099 Sum_probs=55.0
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhc--ccccchhhhhcCCCCC-CCHHH
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLS--ETKSTLYKILAITDPQ-VDISV 83 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~--~~~~d~Y~vLgv~~~~-a~~~~ 83 (193)
+.++..+..+..+|..++..|++++|+..+.++..++|+...+--.+..+-..+.. +....|-++|.+ .++ ....+
T Consensus 49 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~ 127 (148)
T 2vgx_A 49 VLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL-IANXPEFXE 127 (148)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTCGGGHH
T ss_pred HcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCCCcchH
Confidence 34566788889999999999999999999999999999886544333333222211 111455566776 443 33345
Q ss_pred HHHHHHHHH
Q 048108 84 IKKQFKKMA 92 (193)
Q Consensus 84 Ik~aYr~l~ 92 (193)
++.....+.
T Consensus 128 ~~~~~~~~l 136 (148)
T 2vgx_A 128 LSTRVSSML 136 (148)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 554444443
No 52
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.34 E-value=0.0077 Score=41.44 Aligned_cols=43 Identities=19% Similarity=0.191 Sum_probs=37.4
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
+.+++.+..+..+|..++..|+++.|+..+.++..++|....+
T Consensus 13 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 55 (115)
T 2kat_A 13 AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA 55 (115)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHH
Confidence 4456667889999999999999999999999999999987543
No 53
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.31 E-value=0.28 Score=35.49 Aligned_cols=48 Identities=13% Similarity=0.009 Sum_probs=42.2
Q ss_pred cccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108 3 RMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID 50 (193)
Q Consensus 3 ~~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~ 50 (193)
+...+.+++.+..+..+|..++..|++++|+..+.++..++|....+-
T Consensus 11 ~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 58 (148)
T 2vgx_A 11 AMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFF 58 (148)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHH
Confidence 344677899999999999999999999999999999999999876443
No 54
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.19 E-value=0.25 Score=36.96 Aligned_cols=46 Identities=22% Similarity=0.259 Sum_probs=41.2
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 2 WRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 2 ~~~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
|.|+.+.....+..+..+|..++..|+++.|+..+.++..+.|..+
T Consensus 27 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~ 72 (198)
T 2fbn_A 27 YDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE 72 (198)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc
Confidence 6677776677899999999999999999999999999999998765
No 55
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.12 E-value=0.058 Score=39.21 Aligned_cols=55 Identities=11% Similarity=0.017 Sum_probs=46.2
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHHhh
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP-NIDDYFTACRVHQL 61 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~-~i~~~l~~~~~~~~ 61 (193)
+.++..+..+..+|..++..|+++.|+.++.++..++|+.. .+...+..+...+.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA 146 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 34566678889999999999999999999999999999987 67777777765544
No 56
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.09 E-value=0.018 Score=38.22 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=21.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 17 RDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 17 ~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
+.+|..++..|++++|+..+.++..++|...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 34 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGK 34 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 4566666777777777777777777776664
No 57
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.012 Score=40.87 Aligned_cols=84 Identities=17% Similarity=0.070 Sum_probs=53.4
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc--cccchhhhhcCCCCC----CC
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE--TKSTLYKILAITDPQ----VD 80 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~--~~~d~Y~vLgv~~~~----a~ 80 (193)
+.+++.+..+..+|..++..|++++|+..+.++..++|....+--.+..+-..+..- ....|-++|.+ .|+ ..
T Consensus 32 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~p~ 110 (126)
T 3upv_A 32 KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK-DAEVNNGSS 110 (126)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHHTTTT
T ss_pred HhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh-CcccCCchh
Confidence 345667888999999999999999999999999999999854433333332222111 11445556666 411 34
Q ss_pred HHHHHHHHHHH
Q 048108 81 ISVIKKQFKKM 91 (193)
Q Consensus 81 ~~~Ik~aYr~l 91 (193)
..++.....++
T Consensus 111 ~~~~~~~l~~~ 121 (126)
T 3upv_A 111 AREIDQLYYKA 121 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44555544443
No 58
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.06 E-value=0.011 Score=42.42 Aligned_cols=50 Identities=12% Similarity=0.028 Sum_probs=40.4
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTAC 56 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~ 56 (193)
..+++.+..+..+|..++..|+++.|+..+.++..++|....+.-.+..+
T Consensus 46 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 46 MLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 34566788899999999999999999999999999999986544434333
No 59
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=95.02 E-value=0.1 Score=37.87 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
+.+++.+..+..+|..++..|++++|+..+.++..++|....
T Consensus 39 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 80 (164)
T 3sz7_A 39 SIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK 80 (164)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 344556778899999999999999999999999999999753
No 60
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.01 E-value=0.027 Score=36.24 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID 50 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~ 50 (193)
..+..+..+|..++..|+++.|+..+.++..++|....+-
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 46 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW 46 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 4678888999999999999999999999999999875433
No 61
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=94.91 E-value=0.07 Score=36.74 Aligned_cols=44 Identities=16% Similarity=0.044 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHH
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDY 52 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~ 52 (193)
+++.+..+..+|..++..|+++.|+..+.++..++|+...+--.
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 66 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVF 66 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 57889999999999999999999999999999999998644333
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=94.82 E-value=0.048 Score=40.13 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
+.+..+.++|..++..|++++|+..++++.+++|+...+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 41 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVET 41 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 456778899999999999999999999999999987543
No 63
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.73 E-value=0.17 Score=33.18 Aligned_cols=42 Identities=24% Similarity=0.359 Sum_probs=36.2
Q ss_pred CHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108 9 VKLAAE-KARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID 50 (193)
Q Consensus 9 ~~~ea~-~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~ 50 (193)
+++.+. .+..+|..++..|++++|+..+.++..++|....+.
T Consensus 30 ~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 30 EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 445566 888999999999999999999999999999986543
No 64
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=94.55 E-value=0.057 Score=37.95 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108 14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID 50 (193)
Q Consensus 14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~ 50 (193)
..++.+|..++..|++++|+..+.++..++|....+-
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~ 54 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAW 54 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Confidence 3466777777777888888888888888777764433
No 65
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=94.39 E-value=0.13 Score=34.55 Aligned_cols=45 Identities=22% Similarity=0.266 Sum_probs=38.1
Q ss_pred ccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 4 MLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 4 ~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
+..+.++..+..+..+|..++..|+++.|+..+.++..++|....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 47 (131)
T 2vyi_A 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAV 47 (131)
T ss_dssp C---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred chhhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH
Confidence 445667888999999999999999999999999999999998743
No 66
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.38 E-value=0.17 Score=38.41 Aligned_cols=53 Identities=9% Similarity=0.064 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE 63 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~ 63 (193)
...+.+..+|..+++.|||+.|++++.++.+++|....+..+...++..+..+
T Consensus 69 ~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~kd 121 (152)
T 1pc2_A 69 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 121 (152)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 45788899999999999999999999999999999988888888887665443
No 67
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=94.35 E-value=0.039 Score=36.75 Aligned_cols=40 Identities=13% Similarity=0.073 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
.+++.+..+..+|..++..|++++|+..+.++..++|+..
T Consensus 33 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 72 (111)
T 2l6j_A 33 AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAE 72 (111)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTT
T ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcc
Confidence 3455677788999999999999999999999999999873
No 68
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=94.28 E-value=0.062 Score=41.16 Aligned_cols=43 Identities=23% Similarity=0.009 Sum_probs=35.4
Q ss_pred cCCHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108 7 NLVKLAAEKARD----------------AAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 7 e~~~~ea~~~~~----------------~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
+.+++.+..+.. +|..++..|++++|+..+.++..++|....+
T Consensus 32 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 90 (208)
T 3urz_A 32 ALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDC 90 (208)
T ss_dssp HHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Confidence 345666666666 9999999999999999999999999987543
No 69
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=94.23 E-value=0.042 Score=36.48 Aligned_cols=46 Identities=11% Similarity=-0.029 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHH
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFT 54 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~ 54 (193)
++..+..+..+|..++..|+++.|+..+.++..++|....+-..+.
T Consensus 34 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 79 (118)
T 1elw_A 34 DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKA 79 (118)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3445678889999999999999999999999999998754433333
No 70
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.17 E-value=0.031 Score=39.07 Aligned_cols=77 Identities=16% Similarity=0.100 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhc--ccccchhhhhcCCCCCCCHHHHHHHHH
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLS--ETKSTLYKILAITDPQVDISVIKKQFK 89 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~--~~~~d~Y~vLgv~~~~a~~~~Ik~aYr 89 (193)
.+..+..+|..++..|+++.|+..+.++..++|....+--.+..+-..... .....+-++|.+ .+. ..++...+.
T Consensus 64 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~--~~~~~~~l~ 140 (148)
T 2dba_A 64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL-EPK--NKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC--cHHHHHHHH
Confidence 378899999999999999999999999999999875433333322221111 111445566666 543 334455444
Q ss_pred HH
Q 048108 90 KM 91 (193)
Q Consensus 90 ~l 91 (193)
++
T Consensus 141 ~~ 142 (148)
T 2dba_A 141 NI 142 (148)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 71
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.15 E-value=0.1 Score=35.71 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc--cccchhhhhcCCCCC-CCHH
Q 048108 9 VKLAAEKARDAAEEYFKLQN---IDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE--TKSTLYKILAITDPQ-VDIS 82 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d---~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~--~~~d~Y~vLgv~~~~-a~~~ 82 (193)
+++.++.+...|+.++..++ .+.|...+.+|..++|......-++.........- .-.-|-.+|.. .+. ....
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~-~p~~~~~~ 80 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS-NDPNLDRV 80 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC-CCTTCCHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHH
Confidence 34557777788888766655 68888888888888888765544444333221111 11445666777 444 3344
Q ss_pred HHHHHHHH
Q 048108 83 VIKKQFKK 90 (193)
Q Consensus 83 ~Ik~aYr~ 90 (193)
.|..+..+
T Consensus 81 ~i~~~I~~ 88 (93)
T 3bee_A 81 TIIESINK 88 (93)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45544433
No 72
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=94.09 E-value=0.032 Score=38.86 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
...+..+..+|..++..|+++.|+..+.++..++|....+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 45 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY 45 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHH
Confidence 3457788888999999999999999999999999886543
No 73
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=94.06 E-value=0.036 Score=44.31 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108 14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
..+..+|..++..|+++.|+..+.++..++|+...+
T Consensus 273 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 308 (359)
T 3ieg_A 273 RSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNA 308 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHH
Confidence 445667888888888888888888888888876533
No 74
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=94.03 E-value=0.011 Score=49.43 Aligned_cols=33 Identities=21% Similarity=0.103 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
.+.++|..++..|+++.|+..+.++..++|...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~ 264 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP 264 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 567778888888888888888888888888654
No 75
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=93.91 E-value=0.061 Score=36.92 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
.+..+..+|..++..|+++.|+..+.++..++|+.+.
T Consensus 38 ~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 74 (129)
T 2xev_A 38 TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK 74 (129)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc
Confidence 3477888999999999999999999999999998743
No 76
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=93.84 E-value=0.048 Score=39.74 Aligned_cols=44 Identities=20% Similarity=0.226 Sum_probs=38.5
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
.+.+++.+..+..+|..++..|+++.|+..+.++.+++|+...+
T Consensus 58 l~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 101 (150)
T 4ga2_A 58 INVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDL 101 (150)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHH
Confidence 34566778889999999999999999999999999999998543
No 77
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=93.82 E-value=0.55 Score=35.69 Aligned_cols=37 Identities=19% Similarity=0.118 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
..+|..++.++..++..|+|++|+..|.+|.+++|+.
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~ 44 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTM 44 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC
Confidence 4678999999999999999999999999999999983
No 78
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=93.76 E-value=0.18 Score=43.90 Aligned_cols=46 Identities=15% Similarity=0.072 Sum_probs=39.8
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 2 WRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 2 ~~~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
|.+..+.+.+.+..+..+|..++..|+|+.|+..|.+|..++|...
T Consensus 257 ~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~ 302 (457)
T 1kt0_A 257 WEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY 302 (457)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc
Confidence 4455566678899999999999999999999999999999999873
No 79
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=93.75 E-value=0.076 Score=36.56 Aligned_cols=50 Identities=14% Similarity=0.014 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRV 58 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~ 58 (193)
+++.+..+..+|..++..|++++|+..+.++..+.|..+.+......+..
T Consensus 57 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~ 106 (117)
T 3k9i_A 57 FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILF 106 (117)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44556777888999999999999999999999999999877666555543
No 80
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=93.73 E-value=0.14 Score=37.35 Aligned_cols=39 Identities=13% Similarity=0.069 Sum_probs=26.8
Q ss_pred HHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhCCCCccHH
Q 048108 12 AAEKARDAAEE-YFKLQNI--DMAIKTLKAAKEFNPDLPNID 50 (193)
Q Consensus 12 ea~~~~~~A~~-~~~~~d~--~~A~~~~~~a~~l~p~~~~i~ 50 (193)
.+..+..+|.. ++..|++ +.|+..+.++..++|....+-
T Consensus 77 ~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 118 (177)
T 2e2e_A 77 NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITAL 118 (177)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHH
Confidence 35566677777 6677777 777777777777777765433
No 81
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=93.68 E-value=0.26 Score=31.29 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHH
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFT 54 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~ 54 (193)
+++.+..+..+|..++..|++++|+..+.++..++|....+...+.
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 39 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3445667788999999999999999999999999998865444443
No 82
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=93.62 E-value=0.094 Score=39.38 Aligned_cols=36 Identities=14% Similarity=0.051 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
+..+..+|..++..|+++.|+.++.++..++|....
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 123 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVK 123 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHH
Confidence 467788888899999999999999999999887653
No 83
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=93.56 E-value=0.076 Score=45.15 Aligned_cols=70 Identities=16% Similarity=0.073 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhc--ccccchhhhhcCCCCC
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLS--ETKSTLYKILAITDPQ 78 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~--~~~~d~Y~vLgv~~~~ 78 (193)
.++..+..+.++|..++..|++++|+.++.+|..++|....+--.+..+-..+.. +....|-+.|.+ .|.
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l-~P~ 339 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-APE 339 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCC
Confidence 4567788899999999999999999999999999999875433333333222111 112455566777 554
No 84
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=93.36 E-value=0.18 Score=40.98 Aligned_cols=37 Identities=14% Similarity=0.029 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
.+..+..+|..++..|++++|...++++..++|....
T Consensus 199 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 199 TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 3445566777888888888888888888888888754
No 85
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.33 E-value=0.3 Score=33.41 Aligned_cols=47 Identities=11% Similarity=0.123 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRV 58 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~ 58 (193)
.+..+..+|.++++.|+++.|+..+++|..+.|+.+.+..-+..++.
T Consensus 45 ~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~~~ 91 (104)
T 2v5f_A 45 KVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEY 91 (104)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHHHHH
Confidence 45666788899999999999999999999999998765444444443
No 86
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=93.21 E-value=0.039 Score=38.35 Aligned_cols=49 Identities=18% Similarity=0.143 Sum_probs=39.2
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHH
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFT 54 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~ 54 (193)
++.+++.+..+..+|..++..|+++.|+..+.++..++|....+--.+.
T Consensus 36 l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 36 ITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3345566788999999999999999999999999999998754433333
No 87
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=93.15 E-value=0.11 Score=34.92 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHh
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQ 60 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~ 60 (193)
+..+..+|..++..|+++.|+..+.++..+.|+. .+...+..+...+
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 125 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP-DVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHH
Confidence 6778899999999999999999999999999964 4555555554443
No 88
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=93.14 E-value=0.076 Score=34.87 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 16 ARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 16 ~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
+..+|..++..|+++.|+..+.++..++|..
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 39 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEE 39 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC
Confidence 3444555555555555555555555555543
No 89
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=93.09 E-value=0.75 Score=38.01 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=39.6
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 2 WRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 2 ~~~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
|.+..+.+++.+..+..+|..++..|+++.|+..+.+|..++|...
T Consensus 136 ~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~ 181 (336)
T 1p5q_A 136 WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYES 181 (336)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccc
Confidence 3444555678899999999999999999999999999999999873
No 90
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=93.08 E-value=0.15 Score=38.13 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
+..+..+|..++..|+++.|+..+.++..++|...
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 71 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA 71 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 45677788888888888888888888888887754
No 91
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=92.96 E-value=0.083 Score=35.95 Aligned_cols=45 Identities=18% Similarity=0.164 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHH
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDD 51 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~ 51 (193)
+.+++.+..+..+|..++..|++++|+..+.++..++|....+--
T Consensus 44 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 88 (133)
T 2lni_A 44 KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYT 88 (133)
T ss_dssp TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHH
Confidence 344556788889999999999999999999999999998754433
No 92
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.91 E-value=0.049 Score=38.36 Aligned_cols=17 Identities=29% Similarity=0.630 Sum_probs=10.0
Q ss_pred ccCccCCCcceEecccC
Q 048108 177 IFCQCQGRRKIVILRNC 193 (193)
Q Consensus 177 ~~C~~C~~~~~v~~~~c 193 (193)
..|+.|+|+|.+|.++|
T Consensus 68 ~~C~~C~G~G~~i~~~C 84 (104)
T 2ctt_A 68 STCRRCGGRGSIIISPC 84 (104)
T ss_dssp EECSSSSSSSEECSSCC
T ss_pred EECCcCCCcceECCCcC
Confidence 45666666666665555
No 93
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=92.90 E-value=0.27 Score=32.32 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
.+..+..+|..++..|+++.|+..+.++..++|....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 39 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV 39 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH
Confidence 6788999999999999999999999999999998753
No 94
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=92.82 E-value=0.72 Score=42.93 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
.++.|+.+.++|..+...|++++|+..+++|.+++|+..
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~ 43 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA 43 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 456777888888888888888888888888888888764
No 95
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=92.71 E-value=0.26 Score=32.93 Aligned_cols=41 Identities=22% Similarity=0.152 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
+++.+..+..+|..++..|+++.|+..+.++..++|....+
T Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 82 (131)
T 2vyi_A 42 NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKA 82 (131)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHH
Confidence 34457788899999999999999999999999999987543
No 96
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=92.64 E-value=0.41 Score=32.02 Aligned_cols=38 Identities=26% Similarity=0.404 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
+.+..+..+|..++..|+++.|+..+.++..++|....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 39 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT 39 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH
Confidence 46788899999999999999999999999999998753
No 97
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.61 E-value=0.38 Score=35.31 Aligned_cols=52 Identities=10% Similarity=0.048 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhc
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLS 62 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~ 62 (193)
..-+.+.-+|..+++.|||..|++++....+..|....+..+...++..+..
T Consensus 72 ~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k 123 (126)
T 1nzn_A 72 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 123 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 3457788899999999999999999999999999998888888887765543
No 98
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=92.57 E-value=0.29 Score=45.63 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=32.8
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
+.+++.+..+.++|..++..|++++|+..+++|.+++|+...
T Consensus 37 ~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~ 78 (723)
T 4gyw_A 37 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 78 (723)
T ss_dssp HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 344555677778888888888888888888888888888643
No 99
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.43 E-value=0.28 Score=33.97 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
.++..+..+..+|..++..|+++.|+..+.++..++|..
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 61 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP 61 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc
Confidence 345678899999999999999999999999999999985
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=92.32 E-value=0.095 Score=40.07 Aligned_cols=45 Identities=9% Similarity=-0.050 Sum_probs=38.2
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHH
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDD 51 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~ 51 (193)
+.+++.+..+..+|..++..|++++|+..++++..++|+...+--
T Consensus 82 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 126 (208)
T 3urz_A 82 QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANI 126 (208)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 345666788899999999999999999999999999999865433
No 101
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=92.26 E-value=0.14 Score=36.25 Aligned_cols=42 Identities=12% Similarity=0.008 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID 50 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~ 50 (193)
+++.+..+..+|..++..|+++.|+..+.++..++|....+-
T Consensus 43 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 84 (166)
T 1a17_A 43 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGY 84 (166)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 445577889999999999999999999999999999875433
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=92.19 E-value=2.4 Score=32.20 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
..++.+|..++..|+++.|+..+.++.+++|+.+.
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~ 76 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 76 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 44555666666666666666666666666666544
No 103
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=92.17 E-value=0.12 Score=42.92 Aligned_cols=67 Identities=19% Similarity=0.171 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc----cccchhhhhcCCCCCC
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE----TKSTLYKILAITDPQV 79 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~----~~~d~Y~vLgv~~~~a 79 (193)
+..+..+.++|..++..|+++.|+..+.+|..++|....+- ......+.... ....|-++|.+ .|..
T Consensus 193 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~--~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~ 263 (336)
T 1p5q_A 193 ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGL--SRRGEAHLAVNDFELARADFQKVLQL-YPNN 263 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHH-CSSC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH--HHHHHHHHHCCCHHHHHHHHHHHHHH-CCCC
Confidence 44578889999999999999999999999999999875333 33222222221 12455667777 5543
No 104
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=92.17 E-value=0.34 Score=32.04 Aligned_cols=39 Identities=26% Similarity=0.337 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
++.+..+..+|..++..|+++.|+..+.++..++|....
T Consensus 40 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 78 (125)
T 1na0_A 40 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 78 (125)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH
Confidence 445677888999999999999999999999999988753
No 105
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=92.10 E-value=2.8 Score=32.36 Aligned_cols=35 Identities=29% Similarity=0.267 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
...+.+|..++..|+++.|+..+.++...+|..+.
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 183 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPW 183 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCch
Confidence 34488899999999999999999999999998754
No 106
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=92.04 E-value=0.072 Score=35.37 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=11.2
Q ss_pred ccCccCCCcceEecccC
Q 048108 177 IFCQCQGRRKIVILRNC 193 (193)
Q Consensus 177 ~~C~~C~~~~~v~~~~c 193 (193)
..|+.|+|+|.++.++|
T Consensus 51 ~~C~~C~G~G~~~~~~C 67 (79)
T 1exk_A 51 QTCPHCQGRGTLIKDPC 67 (79)
T ss_dssp EECTTTTTSSEECSSBC
T ss_pred eECcCCCCccEECCCcC
Confidence 46777777777666655
No 107
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=91.88 E-value=0.052 Score=36.68 Aligned_cols=41 Identities=17% Similarity=0.034 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
.+++.+..+..+|..+...|++++|+..+.++..+.|....
T Consensus 36 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 36 TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 34455667888999999999999999999999999887654
No 108
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=91.71 E-value=1.7 Score=29.23 Aligned_cols=33 Identities=21% Similarity=0.105 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
.+..+|..++..|+++.|+..+.++...+|+..
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~ 36 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGV 36 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc
Confidence 467889999999999999999999999999876
No 109
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=91.68 E-value=0.35 Score=33.70 Aligned_cols=43 Identities=16% Similarity=0.079 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID 50 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~ 50 (193)
.+++.+..+..+|..++..|+++.|+..+.+|..++|+...+.
T Consensus 46 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 88 (121)
T 1hxi_A 46 KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVH 88 (121)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3456677888899999999999999999999999999986433
No 110
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=91.67 E-value=0.25 Score=38.11 Aligned_cols=48 Identities=17% Similarity=-0.024 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVH 59 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~ 59 (193)
.+..+..+|..+...|+++.|+.++.++..++|+.+.+.+.+..+...
T Consensus 220 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 220 LIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 346777899999999999999999999999999998877777666543
No 111
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=91.66 E-value=0.13 Score=44.74 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc----cccchhhhhcCCCCC
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE----TKSTLYKILAITDPQ 78 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~----~~~d~Y~vLgv~~~~ 78 (193)
...+..+.++|.+++..|+++.|+.++.+|..++|.... .+......+.... ...+|-++|.+ .|+
T Consensus 314 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~--a~~~~g~a~~~~g~~~~A~~~~~~al~l-~P~ 383 (457)
T 1kt0_A 314 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEK--GLYRRGEAQLLMNEFESAKGDFEKVLEV-NPQ 383 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH--HHHHHHHHHHHccCHHHHHHHHHHHHHh-CCC
Confidence 345778889999999999999999999999999998743 3333333332221 12566667777 543
No 112
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=91.57 E-value=0.16 Score=38.73 Aligned_cols=53 Identities=9% Similarity=0.147 Sum_probs=43.8
Q ss_pred ccCCHH--HHHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHHHhCCCCccHHHHHHHH
Q 048108 6 KNLVKL--AAEKARDAAEEYFKLQNI---------------------------DMAIKTLKAAKEFNPDLPNIDDYFTAC 56 (193)
Q Consensus 6 ~e~~~~--ea~~~~~~A~~~~~~~d~---------------------------~~A~~~~~~a~~l~p~~~~i~~~l~~~ 56 (193)
.+.+++ .+..+..+|..++..|+. +.|+.+++++.+++|+...+..++..+
T Consensus 144 l~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 144 TDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 445666 778888888888888887 999999999999999998888887766
Q ss_pred HH
Q 048108 57 RV 58 (193)
Q Consensus 57 ~~ 58 (193)
..
T Consensus 224 ~~ 225 (228)
T 4i17_A 224 KA 225 (228)
T ss_dssp HT
T ss_pred HH
Confidence 53
No 113
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=91.57 E-value=0.08 Score=40.39 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=39.3
Q ss_pred cCCHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 048108 7 NLVKLAAEKARDAAEEYFKLQ-----------NIDMAIKTLKAAKEFNPDLPNIDDYFTACR 57 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~-----------d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~ 57 (193)
+.|++.+..+..++..+.+.| ++++|+.++++|..++|+.+.....+..+.
T Consensus 74 ~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 74 LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345566677777888888774 899999999999999999875555555443
No 114
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.48 E-value=0.86 Score=30.86 Aligned_cols=50 Identities=14% Similarity=-0.026 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACR 57 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~ 57 (193)
.|++....++-+|..++..|+|+.|+..++++...+|..+....+...+.
T Consensus 38 ~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~i~~~I~ 87 (93)
T 3bee_A 38 LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVTIIESIN 87 (93)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHHHHHHHH
T ss_pred HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 35566777888899999999999999999999999999655554444443
No 115
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=91.47 E-value=0.17 Score=34.27 Aligned_cols=41 Identities=20% Similarity=0.185 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
....+..+..+|..++..|+++.|+..+.++..++|....+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 52 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKL 52 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 34567889999999999999999999999999999987543
No 116
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.35 E-value=0.4 Score=35.56 Aligned_cols=52 Identities=13% Similarity=0.044 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE 63 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~ 63 (193)
.-+.+.-+|..+.+.|||..|+++.....+..|....+..+...++..++.+
T Consensus 77 ~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~ki~kd 128 (134)
T 3o48_A 77 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQKE 128 (134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Confidence 3567788999999999999999999999999999998888888887666544
No 117
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=91.20 E-value=0.65 Score=32.67 Aligned_cols=39 Identities=33% Similarity=0.425 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
.+.+..+..+|..++..|+++.|+..+.++..++|....
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~ 48 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI 48 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH
Confidence 467899999999999999999999999999999998643
No 118
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=91.16 E-value=2.4 Score=33.78 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
.+..+..+|..++..|++++|+..+.+|..++|....
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 39 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV 39 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHH
Confidence 4677888899999999999999999999999997643
No 119
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=90.88 E-value=0.68 Score=39.13 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=44.5
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHh
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQ 60 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~ 60 (193)
.+.+++.+..+..+|..++..|++++|+..+++|.+++|....+...+..+...+
T Consensus 300 l~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 300 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354 (370)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 3455667788889999999999999999999999999998877777666665443
No 120
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=90.86 E-value=0.21 Score=38.34 Aligned_cols=41 Identities=17% Similarity=0.017 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
.+++.+..+..+|..++..|++++|+..+.++..++|+...
T Consensus 34 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~ 74 (217)
T 2pl2_A 34 ENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG 74 (217)
T ss_dssp TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 34445566667777777778888888888888877777643
No 121
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=90.83 E-value=2.4 Score=32.70 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
++..+..+..+|..++..|+++.|+..+.++...+|..
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 48 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH 48 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 34456666777777777777777777777777777765
No 122
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=90.81 E-value=0.38 Score=35.05 Aligned_cols=38 Identities=21% Similarity=0.201 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
.+..+...+..+...++++.|...+.++..++|....+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~ 109 (184)
T 3vtx_A 72 SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADA 109 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH
Confidence 34455556666666666666666666666666665433
No 123
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=90.71 E-value=0.094 Score=35.72 Aligned_cols=39 Identities=3% Similarity=-0.238 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
+++.+..+..+|..++..|++++|+..+.++..++|...
T Consensus 49 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 87 (115)
T 2kat_A 49 DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRG 87 (115)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 445567788899999999999999999999999998654
No 124
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.56 E-value=0.77 Score=34.44 Aligned_cols=52 Identities=13% Similarity=0.044 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE 63 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~ 63 (193)
.-+.+.-+|..+.+.|||..|+++.....+..|....+..+...++..+..+
T Consensus 76 ~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie~~i~kd 127 (144)
T 1y8m_A 76 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQKE 127 (144)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 3466778899999999999999999999999999988888888887665544
No 125
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=90.37 E-value=0.36 Score=36.63 Aligned_cols=36 Identities=19% Similarity=0.144 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
.+..+..+|..++..|+++.|+..+.++..++|...
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 110 (228)
T 4i17_A 75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNA 110 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH
Confidence 344444555555555555555555555555555543
No 126
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=90.09 E-value=0.93 Score=34.11 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFN 43 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~ 43 (193)
+++|+.+..+|..++..|+++.|+..+.++..++
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~ 35 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH 35 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 5789999999999999999999999999999998
No 127
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=89.76 E-value=0.54 Score=34.47 Aligned_cols=38 Identities=18% Similarity=0.040 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
+++.+..+..+|..++..|++++|+..+.++.+++|..
T Consensus 104 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 104 NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 34456667777778888888888888888888888765
No 128
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=89.71 E-value=0.11 Score=38.32 Aligned_cols=34 Identities=9% Similarity=0.077 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
.+..+..|..++..|++++|+..++++..++|..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~ 39 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSR 39 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 3344445555555555555555555555555544
No 129
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.68 E-value=1.4 Score=35.27 Aligned_cols=38 Identities=16% Similarity=0.012 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
..+..+.++|..+...|++++|+..+.+|..+.|....
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~ 112 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ 112 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 34677888888899999999999999999998876543
No 130
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=89.63 E-value=0.15 Score=33.36 Aligned_cols=35 Identities=9% Similarity=0.062 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD 45 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~ 45 (193)
+.+..+..+|..++..|+++.|+..+.++..++|.
T Consensus 38 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 38 EESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 34566778899999999999999999999999998
No 131
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=89.59 E-value=0.63 Score=35.30 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=36.9
Q ss_pred cccCCHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCcc
Q 048108 5 LKNLVKLAAEKARDAAEEYFKLQNI----------DMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 5 ~~e~~~~ea~~~~~~A~~~~~~~d~----------~~A~~~~~~a~~l~p~~~~ 48 (193)
..+.|++.++.+...+..++..+++ ++|+..+++|..++|+...
T Consensus 28 Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~ 81 (158)
T 1zu2_A 28 TYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE 81 (158)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHH
Confidence 3456777888899999999988775 5999999999999999853
No 132
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=89.53 E-value=0.26 Score=37.84 Aligned_cols=41 Identities=24% Similarity=0.158 Sum_probs=32.9
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
.+.+++.+..+..+|..++..|++++|+..+.++.+++ ...
T Consensus 111 l~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~ 151 (217)
T 2pl2_A 111 ERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTP 151 (217)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCH
T ss_pred HHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cch
Confidence 34456677888888999999999999999999999988 543
No 133
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=89.47 E-value=0.87 Score=29.92 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
.+..+..+|..++..|+++.|+..+.++...+|...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 43 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 43 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH
Confidence 367889999999999999999999999999999764
No 134
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=88.88 E-value=5.4 Score=29.21 Aligned_cols=31 Identities=10% Similarity=0.002 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAK 40 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~ 40 (193)
-.++.....+|..++..|+++.|+..+.++.
T Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~ 33 (213)
T 1hh8_A 3 LVEAISLWNEGVLAADKKDWKGALDAFSAVQ 33 (213)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence 3578888999999999999999999999884
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=88.82 E-value=0.43 Score=34.72 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
+++.+..+..+|..++..|+++.|+..+.++..++|....+
T Consensus 40 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 80 (177)
T 2e2e_A 40 NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAEL 80 (177)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 34556788999999999999999999999999999987543
No 136
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=88.68 E-value=1.1 Score=33.03 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
+++.+..+..+|..++..|+++.|+..+.++..++|....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 43 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNEL 43 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchH
Confidence 4567778888888888888888888888888888887643
No 137
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=88.24 E-value=3.4 Score=32.97 Aligned_cols=37 Identities=14% Similarity=0.040 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
.+..+..+|..++..|+++.|+..+.++..++|....
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 252 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL 252 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH
Confidence 5677888899999999999999999999999988643
No 138
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=88.08 E-value=0.99 Score=33.97 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
.+++.+..+..+|..++..|+++.|+..+.++..++|....
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 174 (258)
T 3uq3_A 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR 174 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHH
Confidence 57788899999999999999999999999999999998753
No 139
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=87.82 E-value=0.19 Score=31.26 Aligned_cols=31 Identities=13% Similarity=0.349 Sum_probs=23.3
Q ss_pred cccccCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCCcceEec
Q 048108 137 VKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRRKIVIL 190 (193)
Q Consensus 137 ~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~~~~v~~ 190 (193)
.+...|+.|.+.+.. ....|+.|+|+|.|+.
T Consensus 7 ~~~~~C~~C~GsG~~-----------------------~~~~C~~C~G~G~v~~ 37 (53)
T 2bx9_A 7 DLEVACPKCERAGEI-----------------------EGTPCPACSGKGVILT 37 (53)
T ss_dssp HHEEECTTTTTSSEE-----------------------TTEECTTTTTSSEEEC
T ss_pred CccccCCCCcceecc-----------------------CCCCCccCCCCccEEE
Confidence 445678888888761 1368999999999875
No 140
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=87.70 E-value=0.56 Score=41.04 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTAC 56 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~ 56 (193)
.+++.+..+..+|..++..|++++|+..+++|.+++|....+...+..+
T Consensus 69 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 69 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp SCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3445566677778888888888888888888888888776655555544
No 141
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=87.49 E-value=5.3 Score=30.99 Aligned_cols=39 Identities=26% Similarity=0.175 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
+++.+..+..+|..++..|+++.|+..+.++..++|...
T Consensus 168 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 206 (327)
T 3cv0_A 168 NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDA 206 (327)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 344567778888888888888888888888888888754
No 142
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=87.31 E-value=1.7 Score=29.44 Aligned_cols=33 Identities=9% Similarity=-0.041 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD 45 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~ 45 (193)
|+-|..+|..++..++|..|+.+++.|....+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~ 37 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDE 37 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhc
Confidence 677999999999999999999999999997643
No 143
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=87.24 E-value=1.4 Score=35.38 Aligned_cols=45 Identities=16% Similarity=0.079 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTA 55 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~ 55 (193)
+.+..++..|..++..|++++|+..++++..++|....+.-.+..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~ 159 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAE 159 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHH
Confidence 345677899999999999999999999999999998655444443
No 144
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=87.20 E-value=0.44 Score=40.56 Aligned_cols=38 Identities=26% Similarity=0.459 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
.+.|+.+..+|..++..|++++|+..+.++..++|+..
T Consensus 22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 59 (537)
T 3fp2_A 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP 59 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc
Confidence 34456666666666666666666666666666666543
No 145
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=87.14 E-value=0.27 Score=30.60 Aligned_cols=14 Identities=7% Similarity=0.086 Sum_probs=11.5
Q ss_pred ccCccCCCcceEec
Q 048108 177 IFCQCQGRRKIVIL 190 (193)
Q Consensus 177 ~~C~~C~~~~~v~~ 190 (193)
..|+.|+|+|.|..
T Consensus 24 ~~C~~C~G~G~v~~ 37 (53)
T 3lcz_A 24 EPCPKCLGKGVILT 37 (53)
T ss_dssp EECTTTTTSSEEEC
T ss_pred CcCCCCCCcEEEEE
Confidence 67999999998754
No 146
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=87.04 E-value=2 Score=39.10 Aligned_cols=43 Identities=12% Similarity=-0.051 Sum_probs=33.3
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
+.+++.++.++.+|..++..|++++|+..+.++..++|....+
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a 469 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRL 469 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHH
T ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHH
Confidence 3445566777788888889999999999999999998887543
No 147
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=87.04 E-value=0.9 Score=36.46 Aligned_cols=38 Identities=13% Similarity=0.010 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
+++.+.....+|..++..|++++|+..+.++.+++|+.
T Consensus 215 ~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 215 NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 45566777888888888888888888888888888877
No 148
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=86.87 E-value=0.49 Score=40.27 Aligned_cols=76 Identities=13% Similarity=0.054 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhc-ccccchhhhhcCCCCCCCHHHH
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLS-ETKSTLYKILAITDPQVDISVI 84 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~-~~~~d~Y~vLgv~~~~a~~~~I 84 (193)
.+++.+..+..+|..++..|+++.|+..+.++..++|....+--.+..+-..... ..-...|+.+.+ .++.....|
T Consensus 54 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~ 130 (537)
T 3fp2_A 54 LDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSL-NGDFDGASI 130 (537)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------
T ss_pred hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-CCCCChHHH
Confidence 3456678899999999999999999999999999999975433333333222111 111455677777 655544433
No 149
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=86.70 E-value=2.4 Score=34.52 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
++..+..+..+|..++..|++++|+..+.++..++|+..
T Consensus 63 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 101 (388)
T 1w3b_A 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI 101 (388)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchH
Confidence 344556677777888888888888888888888888764
No 150
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=86.48 E-value=1.6 Score=34.35 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
+..+..+|..++..|+++.|+..+.++..++|...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 71 (359)
T 3ieg_A 37 YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT 71 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc
Confidence 34444455555555555555555555555555443
No 151
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=86.44 E-value=0.21 Score=31.08 Aligned_cols=18 Identities=11% Similarity=0.078 Sum_probs=16.2
Q ss_pred cccCccCCCcceEecccC
Q 048108 176 AIFCQCQGRRKIVILRNC 193 (193)
Q Consensus 176 ~~~C~~C~~~~~v~~~~c 193 (193)
...|+.|+|+|.++.++|
T Consensus 9 ~~~C~~C~GsG~~i~~~C 26 (53)
T 3lcz_A 9 ETTCPNCNGSGREEPEPC 26 (53)
T ss_dssp EEECTTTTTSCEETTEEC
T ss_pred eccCcCCcccccCCCCcC
Confidence 468999999999999888
No 152
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=86.39 E-value=1.7 Score=33.19 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
++..+..+..+|..++..|+++.|+..+.++..++|....
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 78 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE 78 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH
Confidence 3567788888888899999999999999999999887643
No 153
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=86.33 E-value=4.3 Score=27.53 Aligned_cols=39 Identities=8% Similarity=0.054 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
...+..+..+|..++..|+++.|+..+.++..+.+....
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 44 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 44 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC
Confidence 356788999999999999999999999999999876543
No 154
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=86.09 E-value=9.3 Score=28.88 Aligned_cols=40 Identities=13% Similarity=0.050 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHH
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDY 52 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~ 52 (193)
+..+..+|..++..|+++.|+..+.++..++|....+-..
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 113 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQ 113 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHH
Confidence 4456788888999999999999999999999987544333
No 155
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=85.93 E-value=0.47 Score=38.10 Aligned_cols=38 Identities=24% Similarity=0.220 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
++.+..+..+|..++..|++++|+.++.+|..++|...
T Consensus 35 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 72 (281)
T 2c2l_A 35 PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72 (281)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 44566677788888888888888888888888888764
No 156
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=85.89 E-value=1.6 Score=28.78 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
+.+..+|..++..|+++.|+..+.++...+|...
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 35 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA 35 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch
Confidence 3456677777788888888888888877777653
No 157
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=85.59 E-value=3.1 Score=31.60 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=30.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108 16 ARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 16 ~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
.+.+|..++..|++++|+..++++...+|..+..
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 183 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQAT 183 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCcc
Confidence 3577889999999999999999999999998643
No 158
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=85.22 E-value=1.3 Score=31.15 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
+.+..+..+|..++..|+++.|+..+.++..++|...
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 76 (186)
T 3as5_A 40 FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV 76 (186)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Confidence 3455566666777777777777777777777766653
No 159
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=85.17 E-value=0.8 Score=39.73 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTA 55 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~ 55 (193)
+.+..+..+|..++..|++++|+..+.+|..++|....+...+..
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~ 300 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQ 300 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 678889999999999999999999999999999998654444433
No 160
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=84.57 E-value=1.6 Score=33.07 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=29.5
Q ss_pred cCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 7 NLVKLA-AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 7 e~~~~e-a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
+.+++. +..+..+|..++..|+++.|+..+.++..++|...
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~ 71 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA 71 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChH
Confidence 445555 67777777777778888888888888777777654
No 161
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=84.42 E-value=0.3 Score=36.79 Aligned_cols=45 Identities=13% Similarity=-0.020 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHH
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYF 53 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l 53 (193)
+++.+..+..+|..++..|+++.|+..+.++...+|....+-..+
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 199 (243)
T 2q7f_A 155 NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNA 199 (243)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 344566788899999999999999999999999999875443333
No 162
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=84.07 E-value=3.6 Score=34.39 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=30.6
Q ss_pred HHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCccH
Q 048108 15 KARDAAEEYFK---LQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 15 ~~~~~A~~~~~---~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
.+..+|..++. .|+++.|+..+.++..++|....+
T Consensus 414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 451 (514)
T 2gw1_A 414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQA 451 (514)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHH
Confidence 66778888899 999999999999999999987543
No 163
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=83.97 E-value=2.6 Score=27.85 Aligned_cols=41 Identities=10% Similarity=0.104 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 048108 15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRV 58 (193)
Q Consensus 15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~ 58 (193)
.-+.++|.+++.|++++|...+-+|...+|.+. +++..++.
T Consensus 19 ~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~---~LL~i~q~ 59 (73)
T 3ax2_A 19 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ---QLLQVLQQ 59 (73)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH---HHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH---HHHHHHHh
Confidence 346789999999999999999999999999995 45555543
No 164
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=83.70 E-value=2.1 Score=35.46 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=29.2
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
...++..+..+..+|..++..|+++.|+..+.++...+|...
T Consensus 19 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 60 (450)
T 2y4t_A 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY 60 (450)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccH
Confidence 344566777777888888888888888888888887777653
No 165
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=83.59 E-value=5.2 Score=31.05 Aligned_cols=38 Identities=11% Similarity=-0.036 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
++.+..+..+|..++..|+++.|+..+.++..+.|...
T Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 159 (330)
T 3hym_B 122 KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH 159 (330)
T ss_dssp TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH
Confidence 33344566666677777777777777777777777643
No 166
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=83.35 E-value=7.1 Score=32.49 Aligned_cols=112 Identities=9% Similarity=-0.033 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhh-ccc-----ccchhhhhcCCCCCCCHH-HHHHH
Q 048108 15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQL-SET-----KSTLYKILAITDPQVDIS-VIKKQ 87 (193)
Q Consensus 15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~-~~~-----~~d~Y~vLgv~~~~a~~~-~Ik~a 87 (193)
.+..+|..+...|++++|+..++++..++|++.....+....-.... ..+ -..|-+.|.+ .+..... .....
T Consensus 336 ~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i-~~~~~~~~~~~~~ 414 (472)
T 4g1t_A 336 VCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI-NQKSREKEKMKDK 414 (472)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS-CCCCHHHHHHHHH
T ss_pred hhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CcccHHHHHHHHH
Confidence 34577889999999999999999999999987643333222211111 110 1344566777 5544221 11111
Q ss_pred H---HHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCC-chhhhhhhhhh
Q 048108 88 F---KKMALMLHPDKNSSVAADGAFKLIRSANNVLTDP-GKRKAFDNRIR 133 (193)
Q Consensus 88 Y---r~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~-~~R~~YD~~~~ 133 (193)
. -+.++..||+.. +.+..+..+|..+++. .....|.+.++
T Consensus 415 l~~~~~~~l~~~p~~~------~~~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 415 LQKIAKMRLSKNGADS------EALHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp HHHHHHHHHHHCC-CT------THHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 122344566543 3455566666666553 23444554443
No 167
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=83.32 E-value=0.34 Score=38.17 Aligned_cols=66 Identities=9% Similarity=-0.054 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc--cccchhhhhcCCCCC
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE--TKSTLYKILAITDPQ 78 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~--~~~d~Y~vLgv~~~~ 78 (193)
.+..+..+|..++..|+++.|+..+.++..++|....+-..+..+-.....- ....+-++|.+ .|+
T Consensus 235 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~ 302 (330)
T 3hym_B 235 WEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL-RRD 302 (330)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT-CSC
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc-CCC
Confidence 3567889999999999999999999999999998765444444333222111 11344455666 543
No 168
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=83.28 E-value=2 Score=30.15 Aligned_cols=42 Identities=24% Similarity=0.204 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID 50 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~ 50 (193)
+++.+..+..+|..++..|+++.|+..+.++..++|....+-
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 113 (186)
T 3as5_A 72 APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVR 113 (186)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHH
Confidence 345567788999999999999999999999999999875433
No 169
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=83.27 E-value=0.49 Score=39.22 Aligned_cols=46 Identities=17% Similarity=0.123 Sum_probs=39.9
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 2 WRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 2 ~~~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
|.++.+...+.|..+..+|..++..|+|+.|+..|.+|..+.|...
T Consensus 168 ~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~ 213 (338)
T 2if4_A 168 SDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF 213 (338)
T ss_dssp TBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch
Confidence 4555555667899999999999999999999999999999999753
No 170
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=83.17 E-value=2.1 Score=28.13 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
++.+..+..+|..++..|+++.|+..+.++..+.|....
T Consensus 32 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 70 (136)
T 2fo7_A 32 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 70 (136)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchH
Confidence 344667788899999999999999999999999998753
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=83.11 E-value=0.81 Score=40.01 Aligned_cols=40 Identities=13% Similarity=0.069 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
+++.+..+..+|..++..|++++|+..+++|.+++|....
T Consensus 36 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 75 (477)
T 1wao_1 36 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK 75 (477)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Confidence 4455677778899999999999999999999999998753
No 172
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=83.03 E-value=1.1 Score=38.07 Aligned_cols=38 Identities=13% Similarity=-0.056 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC
Q 048108 9 VKLAAEKARDAAEEYFKLQN-IDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d-~~~A~~~~~~a~~l~p~~ 46 (193)
|++.+..+..++..++..|+ +++|+.++.+|..++|..
T Consensus 127 ~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~ 165 (382)
T 2h6f_A 127 NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN 165 (382)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC
Confidence 33444445555555555553 555555555555555554
No 173
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=82.72 E-value=1.7 Score=33.18 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
.+..+..+|..++..|++++|+..+.++..++|...
T Consensus 76 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 111 (275)
T 1xnf_A 76 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 111 (275)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc
Confidence 345566777778888888888888888888888754
No 174
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=82.59 E-value=2.1 Score=35.94 Aligned_cols=35 Identities=29% Similarity=0.332 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD 45 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~ 45 (193)
+.|+.++.+|..++..|+++.|+..+.++..++|+
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 38 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKED 38 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc
Confidence 45666666666666666666666666666666664
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=82.51 E-value=9 Score=25.80 Aligned_cols=37 Identities=14% Similarity=0.133 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
.+..+..+|..++..|+++.|+.++.++..+.+....
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 84 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 84 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence 3567888999999999999999999999998776543
No 176
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=81.98 E-value=8 Score=30.62 Aligned_cols=36 Identities=6% Similarity=-0.308 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
+..+..+|..++..|++++|+..++++..+.|....
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence 456778899999999999999999999999998653
No 177
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=81.80 E-value=1.5 Score=38.56 Aligned_cols=38 Identities=5% Similarity=-0.050 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
+++.+..+..+|..++..|++++|+..++++.+++|..
T Consensus 19 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 56 (568)
T 2vsy_A 19 RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH 56 (568)
T ss_dssp --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 33444555555555555555555555555555555554
No 178
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=81.35 E-value=1.7 Score=32.41 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
++.+..+..+|..++..|+++.|+..+.++..++|...
T Consensus 54 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 91 (243)
T 2q7f_A 54 KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAA 91 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcch
Confidence 33455566666666777777777777777777666543
No 179
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=81.25 E-value=5.1 Score=34.53 Aligned_cols=38 Identities=16% Similarity=0.099 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCcc
Q 048108 11 LAAEKARDAAEEYFKLQNI-DMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~-~~A~~~~~~a~~l~p~~~~ 48 (193)
+.+..+..+|..++..|++ ++|+..+.+|..++|....
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~ 138 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE 138 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHH
Confidence 3567777888888888888 8888888888888887643
No 180
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=80.39 E-value=0.85 Score=36.98 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=6.2
Q ss_pred cccCccCCCcceE
Q 048108 176 AIFCQCQGRRKIV 188 (193)
Q Consensus 176 ~~~C~~C~~~~~v 188 (193)
...|+.|+|+|.+
T Consensus 96 ~~~C~~C~G~g~~ 108 (248)
T 1nlt_A 96 KDRCKSCNGKKVE 108 (248)
T ss_dssp TSBCSSSTTSCEE
T ss_pred CCCCcccCCCceE
Confidence 3445555555443
No 181
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=80.18 E-value=3.5 Score=30.06 Aligned_cols=29 Identities=10% Similarity=-0.090 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 048108 13 AEKARDAAEEYFKL-QNIDMAIKTLKAAKE 41 (193)
Q Consensus 13 a~~~~~~A~~~~~~-~d~~~A~~~~~~a~~ 41 (193)
+..+..+|..++.. |+++.|+..+.++..
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 76 AEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 44455555555555 555555555555555
No 182
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=80.12 E-value=2.5 Score=34.06 Aligned_cols=38 Identities=21% Similarity=0.062 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
++.+..+..+|..++..|+++.|+..+.++..++|...
T Consensus 96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 133 (365)
T 4eqf_A 96 PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL 133 (365)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence 34455666677777777777777777777777777653
No 183
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=80.12 E-value=3.7 Score=30.88 Aligned_cols=29 Identities=14% Similarity=0.135 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKE 41 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~ 41 (193)
+..+..+|..++..|++++|+..+.++..
T Consensus 105 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34444455555555555555555555555
No 184
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=79.89 E-value=2 Score=37.66 Aligned_cols=35 Identities=14% Similarity=0.083 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
+..+..+|..++..|++++|+..++++..++|...
T Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 125 (568)
T 2vsy_A 91 PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEP 125 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 34444555555555555555555555555555543
No 185
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=79.81 E-value=1.4 Score=35.59 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
.+..+..+|..++..|++++|+..+.++..++|...
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 247 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDY 247 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 455677778888888888888888888888888754
No 186
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=79.75 E-value=4.1 Score=33.19 Aligned_cols=39 Identities=8% Similarity=-0.057 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
+...+..+..+|..++..|+++.|+..++++..+.|...
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~ 82 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL 82 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh
Confidence 467788999999999999999999999999999999864
No 187
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=79.74 E-value=0.92 Score=39.28 Aligned_cols=42 Identities=21% Similarity=0.244 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHH
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFT 54 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~ 54 (193)
+..+..++..+...|+++.|+..++++..++|....+-..+.
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 557 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIA 557 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 778889999999999999999999999999997654443333
No 188
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=79.12 E-value=8.1 Score=30.93 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
...+..+..+|..++..|+++.|+..+.++..+.|..
T Consensus 224 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 260 (406)
T 3sf4_A 224 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 260 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence 4456666667777777777777777777776665543
No 189
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=78.48 E-value=2 Score=34.42 Aligned_cols=38 Identities=18% Similarity=0.116 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
++.+..+..+|..++..|+++.|+..+.++..++|...
T Consensus 95 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 132 (368)
T 1fch_A 95 PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ 132 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCH
Confidence 33445566667777777777777777777777777654
No 190
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=77.22 E-value=5.6 Score=33.70 Aligned_cols=42 Identities=12% Similarity=-0.094 Sum_probs=39.0
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
+..+++.+..+..++..+...|++++|+..+.++..++|...
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~ 131 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY 131 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH
Confidence 567889999999999999999999999999999999999864
No 191
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=76.87 E-value=5.4 Score=33.94 Aligned_cols=75 Identities=17% Similarity=0.108 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc---------cccchhhhhcCCCCCCCHHHHH
Q 048108 15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE---------TKSTLYKILAITDPQVDISVIK 85 (193)
Q Consensus 15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~---------~~~d~Y~vLgv~~~~a~~~~Ik 85 (193)
.+..+++.++..|++..|+..+..+...+|..+.+...+..+-...... -..-+.+-||| .|+ .+++
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~-~P~---~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGI-DPG---PTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSC-CCC---HHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC-CCC---HHHH
Confidence 4456788899999999999999999999999987666554443211110 01345567899 774 4567
Q ss_pred HHHHHHHH
Q 048108 86 KQFKKMAL 93 (193)
Q Consensus 86 ~aYr~l~~ 93 (193)
.-|+++..
T Consensus 249 ~l~~~il~ 256 (388)
T 2ff4_A 249 ALNERILR 256 (388)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 77777654
No 192
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=76.78 E-value=15 Score=29.81 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
...|..+..+|..+...|+++.|+.++.+|..+.+...+
T Consensus 140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 457888899999999999999999999999999887654
No 193
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=76.30 E-value=4.2 Score=28.26 Aligned_cols=41 Identities=10% Similarity=0.104 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 048108 15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRV 58 (193)
Q Consensus 15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~ 58 (193)
.-+.+++.++..|+++.|+..+-+|...+|.+. ++|..++.
T Consensus 22 ~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~---~LL~i~q~ 62 (95)
T 1om2_A 22 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ---QLLQVLQQ 62 (95)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHH---HHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH---HHHHHHHh
Confidence 346789999999999999999999999999984 45555543
No 194
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=76.18 E-value=5.4 Score=26.55 Aligned_cols=39 Identities=8% Similarity=-0.040 Sum_probs=31.7
Q ss_pred ccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 4 MLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 4 ~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
|.+....+.|..++..|...=..|++++|+..|..|..+
T Consensus 4 m~~~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 4 MSTGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333344678999999999999999999999998887763
No 195
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=76.05 E-value=8.6 Score=30.66 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD 45 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~ 45 (193)
+..+..++..+...|++++|+..+++|..+.+.
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~ 108 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVE 108 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 344445555555556666666666666555443
No 196
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=75.92 E-value=0.85 Score=28.27 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=15.8
Q ss_pred cccCccCCCcceEecccC
Q 048108 176 AIFCQCQGRRKIVILRNC 193 (193)
Q Consensus 176 ~~~C~~C~~~~~v~~~~c 193 (193)
...|+.|+|.|.++..+|
T Consensus 9 ~~~C~~C~GsG~~~~~~C 26 (53)
T 2bx9_A 9 EVACPKCERAGEIEGTPC 26 (53)
T ss_dssp EEECTTTTTSSEETTEEC
T ss_pred cccCCCCcceeccCCCCC
Confidence 478999999999988776
No 197
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=75.88 E-value=4.2 Score=31.60 Aligned_cols=35 Identities=20% Similarity=0.142 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
+..+..+|..++..|+++.|+..+.++..++|...
T Consensus 55 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 89 (327)
T 3cv0_A 55 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI 89 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCH
Confidence 34445556666666666666666666666666543
No 198
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=75.75 E-value=2.4 Score=34.54 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhccc----ccchhhhhcCCCCC
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSET----KSTLYKILAITDPQ 78 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~----~~d~Y~vLgv~~~~ 78 (193)
.+++.+..+..+|..+...|++++|+..+.++..++|....+...+..+ ...... ...|-+++.+ .|+
T Consensus 300 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~a~~~-~p~ 371 (388)
T 1w3b_A 300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV--LQQQGKLQEALMHYKEAIRI-SPT 371 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH--HHTTTCCHHHHHHHHHHHTT-CTT
T ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhh-CCC
Confidence 3455677788999999999999999999999999999875433333322 222111 1344466777 654
No 199
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=75.53 E-value=5.6 Score=36.54 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRV 58 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~ 58 (193)
+++++.+|...+..|||.-|...+..+...+|+...++++++.+-.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~ 494 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALE 494 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 5678889999999999999999999999999999888888776533
No 200
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=75.25 E-value=18 Score=29.33 Aligned_cols=38 Identities=13% Similarity=0.071 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
...+..+..+|..+...|+++.|+..+.+|..+.|...
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 218 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK 218 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC
Confidence 45567788889999999999999999999999987654
No 201
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=75.05 E-value=17 Score=28.45 Aligned_cols=30 Identities=10% Similarity=-0.004 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
+..+..+|..+...|+++.|+.++.+|..+
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445666666777777777777777777654
No 202
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=74.40 E-value=11 Score=30.02 Aligned_cols=31 Identities=13% Similarity=0.023 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNP 44 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p 44 (193)
+..+.++|..+.. |+++.|+..+++|..+.|
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~ 146 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFE 146 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 4444555555555 555555555555555544
No 203
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.31 E-value=22 Score=29.01 Aligned_cols=32 Identities=6% Similarity=0.016 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 16 ARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 16 ~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
.++.|+.+++.|+|.+|+..+.++....|...
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~ 38 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQS 38 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccc
Confidence 56788889999999999999999999888743
No 204
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=74.28 E-value=12 Score=25.89 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYF 53 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l 53 (193)
..|.-++..|..++..++|.+|.-+++++..+..+++ |..+.
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~~-i~ki~ 92 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLSDNEE-IKKIA 92 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-HHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccccCHH-HHHHH
Confidence 5678889999999999999999999999999988875 66554
No 205
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=74.23 E-value=3.1 Score=33.46 Aligned_cols=49 Identities=14% Similarity=0.028 Sum_probs=38.4
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCccHHHHHHH
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDM-AIKTLKAAKEFNPDLPNIDDYFTA 55 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~-A~~~~~~a~~l~p~~~~i~~~l~~ 55 (193)
+.+++.+..+.+++..+...|++.+ |.+++.++..++|+.+.+..+..+
T Consensus 228 ~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~ 277 (291)
T 3mkr_A 228 DKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAK 277 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 3455667778888888999999875 678999999999999876665443
No 206
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=74.07 E-value=4.1 Score=27.24 Aligned_cols=32 Identities=28% Similarity=0.044 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKE 41 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~ 41 (193)
.+.|..++..|...=+.|+|.+|+..|..+..
T Consensus 8 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 8 EDMARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 56899999999999999999999998887765
No 207
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=73.55 E-value=6 Score=26.67 Aligned_cols=37 Identities=14% Similarity=0.012 Sum_probs=30.6
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
|+--...|..++..|...-..|+|++|+..|..+..+
T Consensus 9 ~~~~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 9 MDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5655678899999999999999999999999887753
No 208
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=73.40 E-value=4.7 Score=28.88 Aligned_cols=33 Identities=18% Similarity=0.100 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
.+.|..++..|...=..|+|++|+.+|..|..+
T Consensus 15 l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 15 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 678999999999999999999999999988764
No 209
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=73.03 E-value=27 Score=27.52 Aligned_cols=39 Identities=8% Similarity=-0.181 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
+++.+..+...|..+...|++++|+..++++.+++|...
T Consensus 95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 133 (308)
T 2ond_A 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP 133 (308)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCc
Confidence 455566777888888899999999999999999999764
No 210
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=73.00 E-value=11 Score=28.86 Aligned_cols=37 Identities=8% Similarity=0.015 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD 45 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~ 45 (193)
....+..+..+|..++..|+++.|+..+.++..+.|.
T Consensus 179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 3556666777777777777777777777777766554
No 211
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=72.79 E-value=27 Score=25.98 Aligned_cols=36 Identities=17% Similarity=0.005 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNP 44 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p 44 (193)
++..+..+..+|..++..|+++.|+..+.++..+.|
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 567788899999999999999999999999998743
No 212
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=72.67 E-value=6.3 Score=32.45 Aligned_cols=31 Identities=19% Similarity=0.039 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108 15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPD 45 (193)
Q Consensus 15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~ 45 (193)
..+.+|..+...|+.++|+..++++...+|.
T Consensus 210 a~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 210 IAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 3344444444444444444444444444444
No 213
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=71.89 E-value=19 Score=28.74 Aligned_cols=40 Identities=8% Similarity=0.036 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
....+..+..+|..++..|+++.|+..+.++..+.|....
T Consensus 183 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 222 (406)
T 3sf4_A 183 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 222 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC
Confidence 5778899999999999999999999999999998776544
No 214
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=71.23 E-value=23 Score=28.76 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
...|..+..+|..+...|+++.|+.++.+|..+.+...+
T Consensus 138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 176 (378)
T 3q15_A 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL 176 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC
Confidence 456788888899999999999999999999998876543
No 215
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=70.55 E-value=6.2 Score=29.65 Aligned_cols=34 Identities=12% Similarity=-0.078 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
++..+..+..+|..++..|+++.|+..+.++..+
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5777888999999999999999999999999998
No 216
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=70.13 E-value=36 Score=29.88 Aligned_cols=31 Identities=6% Similarity=-0.052 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
.+..+++.|..+...|+|++|+..++++..+
T Consensus 308 ~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~ 338 (490)
T 3n71_A 308 FSKDTLEKIDKARSEGLYHEVVKLCRECLEK 338 (490)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3556677888888899999999999988874
No 217
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=69.73 E-value=8.4 Score=30.50 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=24.1
Q ss_pred cCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCCcceEe
Q 048108 141 SCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRRKIVI 189 (193)
Q Consensus 141 ~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~~~~v~ 189 (193)
.|..|...+. +.....+|+.|. .++|..|+.....+
T Consensus 166 ~C~~C~~~F~----------~~~RrhHCR~CG---~v~C~~Cs~~~~~~ 201 (226)
T 3zyq_A 166 ECHRCRVQFG----------VMTRKHHCRACG---QIFCGKCSSKYSTI 201 (226)
T ss_dssp BCTTTCCBCB----------TTBCCEECTTTC---CEECTTTCCEEEEE
T ss_pred CCcCcCCCCC----------ccccccccCCCc---CEeChhhcCCcccC
Confidence 6777776664 223457787774 58899999876554
No 218
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=69.66 E-value=9.8 Score=27.29 Aligned_cols=35 Identities=11% Similarity=0.138 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD 45 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~ 45 (193)
..+..+..+|..++..|+++.|+..+.++..+.+.
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 139 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ 139 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 77888889999999999999999999998876554
No 219
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=69.01 E-value=10 Score=29.01 Aligned_cols=36 Identities=11% Similarity=0.045 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
.+..+...|..++..|+++.|+..+.++..++|...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~ 39 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL 39 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccH
Confidence 456778889999999999999999999999988763
No 220
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=68.88 E-value=17 Score=29.39 Aligned_cols=36 Identities=11% Similarity=0.225 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD 45 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~ 45 (193)
...+..+..+|..++..|+++.|+..+.++..+.|.
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 556666667777777777777777777777766654
No 221
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=68.09 E-value=11 Score=25.19 Aligned_cols=32 Identities=31% Similarity=0.092 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKE 41 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~ 41 (193)
.+.|..++..|...=+.|++.+|+..|..+..
T Consensus 16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 16 EEMARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 46789999999999999999999998887765
No 222
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.04 E-value=4.2 Score=28.12 Aligned_cols=27 Identities=11% Similarity=0.035 Sum_probs=18.6
Q ss_pred ceeeCCCCc---cccccCccCCCcceEecc
Q 048108 165 NTSCPRKYR---AKAIFCQCQGRRKIVILR 191 (193)
Q Consensus 165 ~~~c~~~~~---~~~~~C~~C~~~~~v~~~ 191 (193)
...|+.|.. .....|+.|+|.|.|..+
T Consensus 67 ~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~ 96 (104)
T 2ctt_A 67 RSTCRRCGGRGSIIISPCVVCRGAGQAKQK 96 (104)
T ss_dssp EEECSSSSSSSEECSSCCSSSSSCSEECCC
T ss_pred EEECCcCCCcceECCCcCCCCCCeeEEEEE
Confidence 346666554 344589999999988543
No 223
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=65.82 E-value=24 Score=26.72 Aligned_cols=43 Identities=14% Similarity=-0.062 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRV 58 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~ 58 (193)
|.-++.-|+=.++.|++..|++.+.+|..+.|.+ .++++.+=.
T Consensus 94 AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~---~~~le~a~~ 136 (161)
T 4h7y_A 94 AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP---LEMLEIALR 136 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc---HHHHHHHHH
Confidence 5567777888888999999999999999999887 455555533
No 224
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=65.22 E-value=26 Score=28.42 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKE 41 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~ 41 (193)
.+..+.++|..++..|+++.|+.++.+|..
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345566677777777777777777777777
No 225
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=64.36 E-value=14 Score=25.17 Aligned_cols=33 Identities=15% Similarity=0.027 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
-+.|..++..|...=..|+|++|+..|..|..+
T Consensus 12 l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 12 STAAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999988877653
No 226
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=64.04 E-value=8.3 Score=32.04 Aligned_cols=40 Identities=30% Similarity=0.329 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID 50 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~ 50 (193)
+.+..+..+|..+...|+++.|+..+.+|..++|+...+-
T Consensus 245 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 284 (472)
T 4g1t_A 245 GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHH
Confidence 3445566788899999999999999999999999976443
No 227
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=63.27 E-value=40 Score=26.21 Aligned_cols=29 Identities=10% Similarity=0.008 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAK 40 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~ 40 (193)
.+..+..+|..++..|+++.|+.++.+|.
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666777777777777777777777
No 228
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=62.09 E-value=14 Score=28.25 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKE 41 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~ 41 (193)
..+..+..+|..++..|+++.|+.++.++..
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 34 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD 34 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3445555666666666666666666666655
No 229
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=61.18 E-value=4.4 Score=32.67 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=16.5
Q ss_pred ccccCccCCCcceEe--cccC
Q 048108 175 KAIFCQCQGRRKIVI--LRNC 193 (193)
Q Consensus 175 ~~~~C~~C~~~~~v~--~~~c 193 (193)
....|+.|+|+|.+| .++|
T Consensus 79 ~~~~C~~C~G~G~~i~~~~~C 99 (248)
T 1nlt_A 79 FQTECDVCHGTGDIIDPKDRC 99 (248)
T ss_dssp EECSCTTCSSSSSCCCTTSBC
T ss_pred EEEcCCCCCCcCEEeccCCCC
Confidence 457899999999999 7777
No 230
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=60.32 E-value=14 Score=28.23 Aligned_cols=36 Identities=14% Similarity=0.064 Sum_probs=32.8
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
+.+++.+..+..+|..++..|+++.|+..+.++..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 56 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALED 56 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445678999999999999999999999999999996
No 231
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=60.09 E-value=16 Score=26.06 Aligned_cols=33 Identities=12% Similarity=0.023 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
...+..+..+|..++..|+++.|+..+.++..+
T Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 95 (203)
T 3gw4_A 63 TAEHRALHQVGMVERMAGNWDAARRCFLEEREL 95 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456778888999999999999999999999998
No 232
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=60.08 E-value=39 Score=29.15 Aligned_cols=50 Identities=10% Similarity=-0.062 Sum_probs=36.2
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCccHHHHHHHH
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEF-----NPDLPNIDDYFTAC 56 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l-----~p~~~~i~~~l~~~ 56 (193)
+.+.+-|.-+-++|..+...|+|++|..+++++..+ -|+.+.+...+..+
T Consensus 334 ~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 334 DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 345566777778899999999999999999999874 34454444444333
No 233
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=59.83 E-value=13 Score=28.41 Aligned_cols=34 Identities=12% Similarity=-0.089 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
+...+..+..+|..++..|+++.|+..+.++..+
T Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4667788889999999999999999999999998
No 234
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=59.11 E-value=17 Score=31.15 Aligned_cols=40 Identities=25% Similarity=0.188 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI 49 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i 49 (193)
+..+..+..++..+...|++++|+..+.++...+|....+
T Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence 4568889999999999999999999999999999987543
No 235
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=58.86 E-value=20 Score=24.82 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKE 41 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~ 41 (193)
.-|-..-.+|+.+++.|.|++|+....+|..
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4577888999999999999999887777653
No 236
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=57.50 E-value=46 Score=28.52 Aligned_cols=36 Identities=11% Similarity=-0.022 Sum_probs=31.0
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
+.+..-+.-+-++|..+...|+|++|..+++++..+
T Consensus 323 ~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i 358 (429)
T 3qwp_A 323 DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP 358 (429)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 445667778888999999999999999999999874
No 237
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=56.91 E-value=23 Score=25.68 Aligned_cols=31 Identities=13% Similarity=0.131 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHcCCH-HHH---HHHHHHHHH
Q 048108 11 LAAEKARDAAEEYFKLQNI-DMA---IKTLKAAKE 41 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~-~~A---~~~~~~a~~ 41 (193)
+.+.+.+.+|...+..||+ +++ -..+.||..
T Consensus 27 dgai~~l~~A~~ai~~~d~~~~k~~~~~~i~KA~~ 61 (130)
T 1orj_A 27 DKAIECLERAIEIYDQVNELEKRKEFVENIDRVYD 61 (130)
T ss_dssp HHHHHHHHHHHHTGGGTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999 888 666777765
No 238
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=56.50 E-value=20 Score=25.97 Aligned_cols=32 Identities=9% Similarity=0.138 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
+.|.+.+.+|..++..+|++.+-..+.||..+
T Consensus 34 dgal~~l~~A~~ai~~~d~~~k~~~i~KA~~I 65 (131)
T 3iqc_A 34 EGILRFSSQAKRCIENEDIEKKIYYINRVTDI 65 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999998874
No 239
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=56.16 E-value=5.1 Score=37.72 Aligned_cols=60 Identities=20% Similarity=0.398 Sum_probs=43.2
Q ss_pred HcCCCchhhhhhhhhhhcccccccCCCCCCCCCCCCCCccccccc--CcceeeCC-----------CCccccccCccCCC
Q 048108 118 VLTDPGKRKAFDNRIRLNKVKLMSCSCCRPQGAGDNNSPRASTYK--ANNTSCPR-----------KYRAKAIFCQCQGR 184 (193)
Q Consensus 118 vLsd~~~R~~YD~~~~~~~~f~~~c~~c~~~~~~~~~~~~~~~~~--~~~~~c~~-----------~~~~~~~~C~~C~~ 184 (193)
-|-||..|+.. --.+.|..|+..|.....=||.|..+ ..+..|+. ++.++++.|+.||=
T Consensus 115 e~~dp~~rry~--------ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~CGP 186 (772)
T 4g9i_A 115 ELFDPTNKRYM--------YPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPVCGP 186 (772)
T ss_dssp HHSSTTSTTTT--------CTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTTTSC
T ss_pred HhcCCCCCccC--------CccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCccCCc
Confidence 36788887752 12368999999998777777776543 33445633 67899999999996
Q ss_pred c
Q 048108 185 R 185 (193)
Q Consensus 185 ~ 185 (193)
+
T Consensus 187 ~ 187 (772)
T 4g9i_A 187 S 187 (772)
T ss_dssp C
T ss_pred e
Confidence 5
No 240
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.89 E-value=47 Score=26.93 Aligned_cols=36 Identities=8% Similarity=0.129 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
....+..++..+...|++++|..++.++..+.+...
T Consensus 54 ~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 54 QETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 344578899999999999999999999999888764
No 241
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=53.85 E-value=75 Score=24.58 Aligned_cols=39 Identities=8% Similarity=-0.041 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
.+....+...+..++..|+++.|+..+.++....|....
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~ 110 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE 110 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh
Confidence 455677889999999999999999999999999887643
No 242
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=53.77 E-value=23 Score=26.17 Aligned_cols=33 Identities=12% Similarity=0.032 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFN 43 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~ 43 (193)
+.+.+.+.+|...+..||++.+-..+.||..+-
T Consensus 31 dgal~~l~~A~~aie~~d~~~k~~~i~KA~~Ii 63 (145)
T 1vh6_A 31 NGCLKFIRLAAQAIENDDMERKNENLIKAQNII 63 (145)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999998863
No 243
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=53.34 E-value=21 Score=30.81 Aligned_cols=36 Identities=22% Similarity=0.086 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFN 43 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~ 43 (193)
..++-|..+.++|..+...|++++|..++++|..+.
T Consensus 377 ~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 377 YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999999998764
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.91 E-value=23 Score=30.61 Aligned_cols=115 Identities=16% Similarity=0.098 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC---CccHHHHHHHHHHHhhcccc---cch-hhhh-cCCCCCCC
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKE-FNPD---LPNIDDYFTACRVHQLSETK---STL-YKIL-AITDPQVD 80 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~-l~p~---~~~i~~~l~~~~~~~~~~~~---~d~-Y~vL-gv~~~~a~ 80 (193)
.+.|.--..+|..+...|++.+|...+..... ..-. ...++-++..++..+....- .-+ -++. .+ .....
T Consensus 134 ~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~-~~~~~ 212 (445)
T 4b4t_P 134 VERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKT-FKNPK 212 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSSC
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh-cccCC
Confidence 34566678899999999999999999988764 2222 22233333333333322110 000 0110 01 11223
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchh
Q 048108 81 ISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKR 125 (193)
Q Consensus 81 ~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R 125 (193)
..+++-.|+.+.-.+|-....-..+...|..+.+.+.+..|+.++
T Consensus 213 ~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~ 257 (445)
T 4b4t_P 213 YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKW 257 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHH
Confidence 467888888887777755544456667777777777777777654
No 245
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=57.83 E-value=2.9 Score=38.66 Aligned_cols=46 Identities=7% Similarity=-0.034 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACR 57 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~ 57 (193)
.+++.+++|...+..|||.-|...+..+...+|+...++.+++.+-
T Consensus 460 g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~ 505 (668)
T 2yhe_A 460 GADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAM 505 (668)
Confidence 3678889999999999999999999999999999988888876653
No 246
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=52.47 E-value=20 Score=28.34 Aligned_cols=34 Identities=6% Similarity=-0.160 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFN 43 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~ 43 (193)
++.+..++..+..+...|+++.|+..++++...+
T Consensus 200 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 233 (308)
T 2ond_A 200 GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Confidence 4457788888999999999999999999999963
No 247
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=52.46 E-value=49 Score=28.35 Aligned_cols=47 Identities=13% Similarity=0.125 Sum_probs=37.1
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCccHHHHH
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEF-----NPDLPNIDDYF 53 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l-----~p~~~~i~~~l 53 (193)
+..++-|..+.++|..+...|++++|..++++|..+ -|+.+.+.+++
T Consensus 365 ~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 365 GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 345677888999999999999999999999999874 44555444443
No 248
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=52.27 E-value=5.5 Score=36.87 Aligned_cols=60 Identities=23% Similarity=0.522 Sum_probs=42.3
Q ss_pred cCCCchhhhhhhhhhhcccccccCCCCCCCCCCCCCCccccccc--CcceeeC-----------CCCccccccCccCCCc
Q 048108 119 LTDPGKRKAFDNRIRLNKVKLMSCSCCRPQGAGDNNSPRASTYK--ANNTSCP-----------RKYRAKAIFCQCQGRR 185 (193)
Q Consensus 119 Lsd~~~R~~YD~~~~~~~~f~~~c~~c~~~~~~~~~~~~~~~~~--~~~~~c~-----------~~~~~~~~~C~~C~~~ 185 (193)
|-||..|+.- --.+.|..|+..|.....=||.|..+ ..+..|+ +++.++++.|+.||=+
T Consensus 27 ~~dp~~Rry~--------YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~CGP~ 98 (657)
T 3ttc_A 27 MNTPGERRYR--------YPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPECGPY 98 (657)
T ss_dssp HTSTTSTTTT--------CTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTTTSCC
T ss_pred hcCCCCcccC--------CccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCcccCcc
Confidence 6688777651 12368999999997766777776543 3445563 4778999999999876
Q ss_pred c
Q 048108 186 K 186 (193)
Q Consensus 186 ~ 186 (193)
=
T Consensus 99 l 99 (657)
T 3ttc_A 99 L 99 (657)
T ss_dssp E
T ss_pred c
Confidence 3
No 249
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=51.35 E-value=37 Score=20.82 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
.+|.+.-.-|.+.++-.|+.-|++.+++|.++
T Consensus 18 ~~AqK~aK~AiSAL~feDv~tA~~~L~~AL~l 49 (53)
T 2rkl_A 18 EQIQKLAKYAISALNYEDLPTAKDELTKALDL 49 (53)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence 56888888999999999999999999999875
No 250
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=49.26 E-value=14 Score=31.79 Aligned_cols=36 Identities=6% Similarity=-0.040 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD 45 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~ 45 (193)
+..+..+...|..++..||+++|+..+++|..++|+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s 309 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS 309 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 334444445566677789999999999999999876
No 251
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=48.22 E-value=1.3e+02 Score=25.57 Aligned_cols=40 Identities=18% Similarity=-0.072 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
.|+.....++..+. +...|+++.|+..++++...+|....
T Consensus 8 ~~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~ 47 (530)
T 2ooe_A 8 ENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGR 47 (530)
T ss_dssp HCTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHH
T ss_pred hCCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHH
Confidence 35566677888887 47889999999999999999998754
No 252
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=46.15 E-value=19 Score=26.26 Aligned_cols=34 Identities=6% Similarity=-0.124 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHH-------HHHcCCHHHHHHHHHHHHH
Q 048108 8 LVKLAAEKARDAAEE-------YFKLQNIDMAIKTLKAAKE 41 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~-------~~~~~d~~~A~~~~~~a~~ 41 (193)
.|++++..|+..|+. .+..|+|+.|...+++|.+
T Consensus 4 ~~~ee~~~wl~~A~~dl~~A~~~~~~g~y~~a~F~aqQA~E 44 (141)
T 3o10_A 4 GNPVEARRWLRQARANFSAARNDLHKNANEWVCFKCYLSTK 44 (141)
T ss_dssp CCHHHHHHHHHHHHHHHHHHGGGTTTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhhhhHHhhHHhhCccceEeeehhHHHH
Confidence 478888888888864 5667889888877777654
No 253
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=45.75 E-value=35 Score=28.29 Aligned_cols=32 Identities=16% Similarity=-0.042 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNP 44 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p 44 (193)
.+.....+..++..|+++.|++.+.+.+..+|
T Consensus 136 lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~ 167 (310)
T 3mv2_B 136 TELLLLAIEVALLNNNVSTASTIFDNYTNAIE 167 (310)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 34444555678888888888888888888888
No 254
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=45.20 E-value=8.5 Score=36.19 Aligned_cols=60 Identities=22% Similarity=0.402 Sum_probs=41.1
Q ss_pred cCCCchhhhhhhhhhhcccccccCCCCCCCCCCCCCCccccccc--CcceeeC-----------CCCccccccCccCCCc
Q 048108 119 LTDPGKRKAFDNRIRLNKVKLMSCSCCRPQGAGDNNSPRASTYK--ANNTSCP-----------RKYRAKAIFCQCQGRR 185 (193)
Q Consensus 119 Lsd~~~R~~YD~~~~~~~~f~~~c~~c~~~~~~~~~~~~~~~~~--~~~~~c~-----------~~~~~~~~~C~~C~~~ 185 (193)
|-||..|+..- -.+.|..|+..|.....=||.|..+ ..+..|+ +++.++++.|+.||=+
T Consensus 121 ~~dp~~Rry~y--------pF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~CGP~ 192 (761)
T 3vth_A 121 LKDPKDRRYRY--------PFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDCGPS 192 (761)
T ss_dssp HTCTTSTTTTC--------TTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTTTSCC
T ss_pred hcCCCccccCC--------CcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCccCCe
Confidence 67888877622 2357999998887666666765533 2334553 3678899999999865
Q ss_pred c
Q 048108 186 K 186 (193)
Q Consensus 186 ~ 186 (193)
=
T Consensus 193 l 193 (761)
T 3vth_A 193 L 193 (761)
T ss_dssp E
T ss_pred e
Confidence 3
No 255
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=44.14 E-value=27 Score=29.94 Aligned_cols=42 Identities=12% Similarity=-0.085 Sum_probs=33.2
Q ss_pred ccCCHHHHHHHHHHHH--------------HHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 6 KNLVKLAAEKARDAAE--------------EYFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~--------------~~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
++++.++|...+++|- .+.-.|++++|+..+.+|.+++|..+
T Consensus 289 ~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 289 VKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred hCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 4566777766666554 44578999999999999999999885
No 256
>1o3u_A Conserved hypothetical protein TM0613; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.75A {Thermotoga maritima} SCOP: a.24.16.3
Probab=43.37 E-value=85 Score=22.21 Aligned_cols=80 Identities=11% Similarity=0.042 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccccchhhhhcC-C-CCCCCHHHHHHHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAI-T-DPQVDISVIKKQF 88 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv-~-~~~a~~~~Ik~aY 88 (193)
+.|+.-++.|+..+..|+|+.|...+++|.+.. +..++...... ...-|.-.+|+. . ....+. ++.+.+
T Consensus 14 ~~A~~dL~~A~~~l~~g~y~~a~F~aqQA~Eka-----lKAlL~~~~~~---pktH~l~~L~~~l~~~~~~~~-e~~~~~ 84 (135)
T 1o3u_A 14 DAAKDDLEHAKHDLEHGFYNWACFSSQQAAEKA-----VKAVFQRMGAQ---AWGYSVPDFLGELSSRFEIPE-ELMDHA 84 (135)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHHHHHHHTCC---CCCSSHHHHHHHHTTTSCCCH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH-----HHHHHHHcCCC---CCccCHHHHHHHHHHhcCCCH-HHHHHH
Confidence 589999999999999999999999998887642 22222222111 122223333331 0 112233 677777
Q ss_pred HHHHHhcCCCC
Q 048108 89 KKMALMLHPDK 99 (193)
Q Consensus 89 r~l~~~~HPDk 99 (193)
..|...+-+-+
T Consensus 85 ~~L~~~yi~aR 95 (135)
T 1o3u_A 85 LELDKACIPTR 95 (135)
T ss_dssp HHHHSCC----
T ss_pred HHHHHhhhhcc
Confidence 77777665443
No 257
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=42.81 E-value=1.7e+02 Score=25.48 Aligned_cols=36 Identities=14% Similarity=-0.084 Sum_probs=30.4
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
+.+++-|.-+-++|..+...|+|++|..+++++..+
T Consensus 345 ~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i 380 (490)
T 3n71_A 345 DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG 380 (490)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 345666777788899999999999999999999874
No 258
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=39.75 E-value=86 Score=23.11 Aligned_cols=33 Identities=15% Similarity=0.060 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC
Q 048108 13 AEKARDAAEEYFK----LQNIDMAIKTLKAAKEFNPD 45 (193)
Q Consensus 13 a~~~~~~A~~~~~----~~d~~~A~~~~~~a~~l~p~ 45 (193)
+..+..+|..++. .+|++.|+.++++|....|.
T Consensus 85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 121 (212)
T 3rjv_A 85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSES 121 (212)
T ss_dssp HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS
T ss_pred HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC
Confidence 4445555555555 56666666666666666553
No 259
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=39.57 E-value=49 Score=33.79 Aligned_cols=82 Identities=7% Similarity=0.067 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccc----cchhhhhcCCCCCCCHHHHHHHHH
Q 048108 14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETK----STLYKILAITDPQVDISVIKKQFK 89 (193)
Q Consensus 14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~----~d~Y~vLgv~~~~a~~~~Ik~aYr 89 (193)
+.+-+++.-+.+.|.|++|+..++++..++|..-++-..+..+-.....++- .-|+.-+++ ++-...-+--..+.
T Consensus 1281 deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini-~k~~r~~e~~~lW~ 1359 (1630)
T 1xi4_A 1281 DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI-PKVLRAAEQAHLWA 1359 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc-chHhHHHHHHHHHH
Confidence 3444777778999999999999999999998876555444444322222211 445666666 55333334444566
Q ss_pred HHHHhcC
Q 048108 90 KMALMLH 96 (193)
Q Consensus 90 ~l~~~~H 96 (193)
+++..||
T Consensus 1360 elv~LY~ 1366 (1630)
T 1xi4_A 1360 ELVFLYD 1366 (1630)
T ss_pred HHHHHHH
Confidence 6666664
No 260
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=39.54 E-value=15 Score=23.87 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=18.3
Q ss_pred cccccCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCCc
Q 048108 137 VKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRR 185 (193)
Q Consensus 137 ~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~~ 185 (193)
.....|+.|+...+. ...-++.|+.||.|
T Consensus 26 ~v~Y~C~~CG~~~e~--------------------~~~d~irCp~CG~R 54 (70)
T 1twf_L 26 TLKYICAECSSKLSL--------------------SRTDAVRCKDCGHR 54 (70)
T ss_dssp CCCEECSSSCCEECC--------------------CTTSTTCCSSSCCC
T ss_pred eEEEECCCCCCccee--------------------CCCCCccCCCCCce
Confidence 445577777777651 12245788888875
No 261
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=39.54 E-value=41 Score=24.74 Aligned_cols=33 Identities=15% Similarity=0.012 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFN 43 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~ 43 (193)
.-|..++..|..+...||++.|.-+|.+...|.
T Consensus 38 rta~~llr~A~~y~~egd~e~AYily~R~~~L~ 70 (146)
T 2xze_A 38 RSGVEIIRMASIYSEEGNIEHAFILYNKYITLF 70 (146)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999987654
No 262
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=39.35 E-value=73 Score=26.33 Aligned_cols=46 Identities=15% Similarity=0.036 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhh
Q 048108 16 ARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQL 61 (193)
Q Consensus 16 ~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~ 61 (193)
..-+|..+...|++++|++.+.+....+|+...++-++..++..+.
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~ 148 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL 148 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH
Confidence 4578888999999999999999998888744445555555555444
No 263
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=39.29 E-value=38 Score=28.16 Aligned_cols=35 Identities=6% Similarity=-0.023 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCC
Q 048108 12 AAEKARDAAEEYFK-----LQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 12 ea~~~~~~A~~~~~-----~~d~~~A~~~~~~a~~l~p~~ 46 (193)
+...+.-++.-+.. -||.+.|...+++|..++|+.
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~ 237 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH 237 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence 44455556666666 788888888888888888864
No 264
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=39.22 E-value=15 Score=24.44 Aligned_cols=20 Identities=20% Similarity=0.659 Sum_probs=14.3
Q ss_pred eeeCCCCccc----cccCccCCCc
Q 048108 166 TSCPRKYRAK----AIFCQCQGRR 185 (193)
Q Consensus 166 ~~c~~~~~~~----~~~C~~C~~~ 185 (193)
++|..|+... ..+|+.||..
T Consensus 16 LrC~aCf~~t~~~~k~FCp~CGn~ 39 (79)
T 2con_A 16 LRCHGCFKTTSDMNRVFCGHCGNK 39 (79)
T ss_dssp EECSSSCCEESCSSCCSCSSSCCS
T ss_pred eEecccceECCCcccccccccCcc
Confidence 6776666443 4899999874
No 265
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=38.63 E-value=41 Score=24.96 Aligned_cols=32 Identities=9% Similarity=-0.059 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFN 43 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~ 43 (193)
.+..+..++..++..+|++.|+.++.+|....
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g 48 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG 48 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Confidence 46677788888888999999999999988753
No 266
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=38.30 E-value=48 Score=25.10 Aligned_cols=33 Identities=9% Similarity=0.131 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC
Q 048108 13 AEKARDAAEEYFK----LQNIDMAIKTLKAAKEFNPD 45 (193)
Q Consensus 13 a~~~~~~A~~~~~----~~d~~~A~~~~~~a~~l~p~ 45 (193)
+..+..+|..+.. .++++.|+.++.++..+.+.
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 182 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDS 182 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 3445566666666 66666666666666666555
No 267
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=38.06 E-value=50 Score=22.85 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=15.2
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 048108 18 DAAEEYFK----LQNIDMAIKTLKAAKEFN 43 (193)
Q Consensus 18 ~~A~~~~~----~~d~~~A~~~~~~a~~l~ 43 (193)
.++..+.. .+|++.|+.++.+|..+.
T Consensus 98 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 98 ILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 33344555 566666666666666653
No 268
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=37.63 E-value=50 Score=26.31 Aligned_cols=35 Identities=14% Similarity=0.063 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
.+..+..+|..++..|++++|...+.++..+.|..
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence 44556667888888999999999999999888764
No 269
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=36.83 E-value=19 Score=30.93 Aligned_cols=40 Identities=13% Similarity=-0.063 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
+.++.....|+..+...+..|+++.|+..+.++...+|+.
T Consensus 40 ~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~ 79 (530)
T 2ooe_A 40 AQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHI 79 (530)
T ss_dssp TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCH
T ss_pred HHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Confidence 3345567778888999999999999999999999999963
No 270
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=36.52 E-value=16 Score=27.14 Aligned_cols=9 Identities=22% Similarity=0.386 Sum_probs=7.8
Q ss_pred ccCccCCCc
Q 048108 177 IFCQCQGRR 185 (193)
Q Consensus 177 ~~C~~C~~~ 185 (193)
..||.||..
T Consensus 149 ~~Cp~CG~~ 157 (165)
T 2lcq_A 149 GVCPDCGSK 157 (165)
T ss_dssp GBCTTTCCB
T ss_pred CcCCCCCCc
Confidence 589999987
No 271
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=36.48 E-value=40 Score=29.43 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
+.++.+++..|...+..||+++|.+.+..|.++--..
T Consensus 379 ~~~~a~~~~~a~~~~~~gd~~~A~~~L~~A~~~~~~~ 415 (464)
T 4fx5_A 379 QAEMAAAIQEGLDAQAAGDLDTATARLGRAMDLAVES 415 (464)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 4567788889999999999999999999999885543
No 272
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=35.93 E-value=64 Score=22.29 Aligned_cols=30 Identities=17% Similarity=0.024 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAK 40 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~ 40 (193)
..|..-+..|+..+..++|..|+.++++|.
T Consensus 32 ~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe 61 (98)
T 4fm3_A 32 KLAQDKYAAAQIAMTAESYKKARLLAEQAE 61 (98)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 356777889999999999999999999985
No 273
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.83 E-value=35 Score=21.41 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=20.7
Q ss_pred cccccCCCCCCCCCCCCCCcccccccCcceeeCCCC
Q 048108 137 VKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKY 172 (193)
Q Consensus 137 ~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~ 172 (193)
.|...|..|+.+-.+.........|-..+..|..+.
T Consensus 3 ~~~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~ 38 (73)
T 1wig_A 3 SGSSGCDSCEKYITGRVLEAGEKHYHPSCALCVRCG 38 (73)
T ss_dssp CSCCSCSSSCCCCSSCCBCCSSCCBCTTTSCCSSSC
T ss_pred cCcCCcccCCCEecCeeEEeCCCCCCCCcCEeCCCC
Confidence 456678888877654433444455555556665443
No 274
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=34.27 E-value=63 Score=22.32 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 048108 13 AEKARDAAEEYFK----LQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 13 a~~~~~~A~~~~~----~~d~~~A~~~~~~a~~l 42 (193)
+..+..++..++. .+|++.|+.++++|...
T Consensus 57 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 90 (138)
T 1klx_A 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL 90 (138)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC
Confidence 4566777788888 89999999999999876
No 275
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=33.64 E-value=55 Score=20.09 Aligned_cols=42 Identities=21% Similarity=0.186 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhh
Q 048108 85 KKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDN 130 (193)
Q Consensus 85 k~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~ 130 (193)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 14 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~~eK~~y~~~ 55 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH----NAELSKMLGKSWKALTLAEKRPFVEE 55 (71)
T ss_dssp HHHHHHHHHTTCTTSC----HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4556777777888764 45788899999999987766554443
No 276
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=33.27 E-value=1.6e+02 Score=22.52 Aligned_cols=41 Identities=7% Similarity=-0.023 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID 50 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~ 50 (193)
.+....+...+..++..|+++.|...+.++....+..+...
T Consensus 72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~ 112 (293)
T 3u3w_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ 112 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHH
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHH
Confidence 45566777889999999999999999999999888765433
No 277
>1wol_A ST0689, 122AA long conserved hypothetical protein; alpha helix, loop, unknown function; 1.62A {Sulfolobus tokodaii}
Probab=32.95 E-value=81 Score=21.72 Aligned_cols=74 Identities=11% Similarity=0.011 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHHHHHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKK 90 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~aYr~ 90 (193)
..|..-+..|+..+..|+|+.|...+++|.+.. +..++..... . ...-|.-.+|+. - + .++....+.
T Consensus 9 ~~A~~dL~~A~~~~~~g~y~~a~f~aqQa~Ek~-----lKalL~~~g~--~-p~tH~l~~L~~~-~---~-~~~~~~~~~ 75 (122)
T 1wol_A 9 KQAERDLEEARYAKSGGYYELACFLSQQCAEKA-----VKGLLQFQGI--E-KRGHSISHLLTN-P---P-ADILQCATF 75 (122)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHHHHHHTTC--C-CCSSCHHHHCSS-C---C-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-----HHHHHHHcCC--C-CCCcCHHHHHHh-C---C-HHHHHHHHH
Confidence 467888888999999999999999998886642 2323322211 1 223444445554 2 2 266677777
Q ss_pred HHHhcCC
Q 048108 91 MALMLHP 97 (193)
Q Consensus 91 l~~~~HP 97 (193)
|...+-|
T Consensus 76 L~~~yi~ 82 (122)
T 1wol_A 76 LDKQYTP 82 (122)
T ss_dssp HHTSSCC
T ss_pred HHHHHhh
Confidence 7766543
No 278
>2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} PDB: 2q00_A
Probab=32.64 E-value=63 Score=23.42 Aligned_cols=31 Identities=26% Similarity=0.252 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKE 41 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~ 41 (193)
+-|+++++.|+.++..||+..|-.-+=+|..
T Consensus 5 ~lAe~yL~EA~ell~kGD~vQAsEK~ykAae 35 (129)
T 2jpu_A 5 TSAEVYYEEAEEFLSKGDLVQACEKYYKAAE 35 (129)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4689999999999999999877666555543
No 279
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=32.36 E-value=7.2 Score=25.50 Aligned_cols=42 Identities=14% Similarity=0.309 Sum_probs=22.3
Q ss_pred ccCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCC
Q 048108 140 MSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGR 184 (193)
Q Consensus 140 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~ 184 (193)
+.||.|+...-.....++.-.|.+..+.- ....+.+|+.||-
T Consensus 3 m~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I---~~Vp~~~C~~CGE 44 (78)
T 3ga8_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVL---KGIHGLYCVHCEE 44 (78)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEE---EEEEEEEETTTCC
T ss_pred eECCCCCCCeeEeEEEEEEEEECCEEEEE---cCceeEECCCCCC
Confidence 47999987542222233444555555443 1223467777763
No 280
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=32.26 E-value=61 Score=21.35 Aligned_cols=31 Identities=23% Similarity=0.178 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKE 41 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~ 41 (193)
.+--.-+.+|..+-..|+|+.|+.+|+.+..
T Consensus 10 ~~i~e~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 10 QMIVENVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3455667889999999999999999998876
No 281
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=31.42 E-value=23 Score=28.69 Aligned_cols=30 Identities=10% Similarity=0.274 Sum_probs=18.0
Q ss_pred cccCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCC
Q 048108 139 LMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQG 183 (193)
Q Consensus 139 ~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~ 183 (193)
+..||.|+...- ..-++.....-.+|+.|+
T Consensus 34 n~yCPnCG~~~l---------------~~f~nN~PVaDF~C~~C~ 63 (257)
T 4esj_A 34 QSYCPNCGNNPL---------------NHFENNRPVADFYCNHCS 63 (257)
T ss_dssp HCCCTTTCCSSC---------------EEC----CCCEEECTTTC
T ss_pred CCcCCCCCChhh---------------hhccCCCcccccccCCcc
Confidence 578999999764 233344455557777775
No 282
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=31.22 E-value=81 Score=26.16 Aligned_cols=39 Identities=18% Similarity=0.078 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHHHHHHHc-----------------CCHHHHHHHHHHHHHhCCC
Q 048108 7 NLVKLAAEKARDAAEEYFKL-----------------QNIDMAIKTLKAAKEFNPD 45 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~-----------------~d~~~A~~~~~~a~~l~p~ 45 (193)
-+|.+.|+.++++|...--. +|+++|.+.+++|...+|.
T Consensus 217 gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 217 GGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 35666676666666554321 5577777777777777776
No 283
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=30.47 E-value=86 Score=23.69 Aligned_cols=35 Identities=11% Similarity=0.013 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD 45 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~ 45 (193)
.++..+.-.|..+|..++|..|...|.+|..+.-.
T Consensus 61 ~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~ 95 (167)
T 3ffl_A 61 QKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA 95 (167)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999998765443
No 284
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=29.89 E-value=86 Score=24.84 Aligned_cols=34 Identities=29% Similarity=-0.004 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108 13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL 46 (193)
Q Consensus 13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~ 46 (193)
++....+|..++..|+++.|+..+.++....|..
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~ 47 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPG 47 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 4555566666777777777777777777766644
No 285
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=29.71 E-value=99 Score=18.92 Aligned_cols=42 Identities=17% Similarity=0.045 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhh
Q 048108 87 QFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDN 130 (193)
Q Consensus 87 aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~ 130 (193)
..|...+.-||+... ...+..+.|.+.|..|++.++....+.
T Consensus 15 ~~r~~~~~~~p~~~~--~~~eisk~lg~~Wk~ls~~eK~~y~~~ 56 (71)
T 1ckt_A 15 TCREEHKKKHPDASV--NFSEFSKKCSERWKTMSAKEKGKFEDM 56 (71)
T ss_dssp HHHHHHHHHCTTCCC--CHHHHHHHHHHHHHTCCTTTSHHHHHH
T ss_pred HHHHHHHHHCCCCCC--cHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 344455667888653 245788899999999998876655543
No 286
>1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} SCOP: a.24.16.3
Probab=28.87 E-value=1.4e+02 Score=20.43 Aligned_cols=81 Identities=16% Similarity=0.091 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccccchhhhhcCC--CCCCCHHHHHHHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAIT--DPQVDISVIKKQF 88 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~--~~~a~~~~Ik~aY 88 (193)
..|..-+..|+..+..|+|+.|...+++|.+.. +..++..... . ...-|.-.+|+.- ....+ .++.+.+
T Consensus 9 ~~A~~~L~~A~~~~~~g~y~~a~f~a~qa~Ek~-----lKalL~~~g~--~-p~tH~l~~L~~~~~~~~~~~-~~~~~~~ 79 (127)
T 1ufb_A 9 EQARHNLRHAQGSLGLGDYAWACFAAQQAAEAA-----LKGLHLARGQ--V-AWGHSILDLLADLPEDVDVP-EDLVEAA 79 (127)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----HHHHHHHTTC--C-CCSSCHHHHHHTSCTTSCCC-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH-----HHHHHHHcCC--C-CCCcCHHHHHHHHHhccCCC-HHHHHHH
Confidence 467888888999999999999999888887632 2222222211 1 2223344444430 11222 3777778
Q ss_pred HHHHHhcCCCCC
Q 048108 89 KKMALMLHPDKN 100 (193)
Q Consensus 89 r~l~~~~HPDk~ 100 (193)
..|...+.+-+.
T Consensus 80 ~~L~~~yi~~RY 91 (127)
T 1ufb_A 80 KVLDKYYIPTRY 91 (127)
T ss_dssp HHHHTTSSTTTC
T ss_pred HHHHHHHhhhcC
Confidence 888776654443
No 287
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=28.70 E-value=1.8e+02 Score=21.58 Aligned_cols=86 Identities=15% Similarity=0.043 Sum_probs=54.1
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhc---ccc---cchhhhhcCCCC
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQN--IDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLS---ETK---STLYKILAITDP 77 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~d--~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~---~~~---~d~Y~vLgv~~~ 77 (193)
.|-+..+|...+...-..|...+ .+.|..++.++.........-.+.+.++-..++. +.. .|.-.++++
T Consensus 5 ~er~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~v--- 81 (200)
T 1ais_B 5 AERNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARV--- 81 (200)
T ss_dssp ---CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTS---
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCC---
Confidence 34556678888888888888765 6889999999988765443223333333332221 112 444445555
Q ss_pred CCCHHHHHHHHHHHHHhcC
Q 048108 78 QVDISVIKKQFKKMALMLH 96 (193)
Q Consensus 78 ~a~~~~Ik~aYr~l~~~~H 96 (193)
+..+|.+.|+.+...+.
T Consensus 82 --~~~~i~~~~~~l~~~L~ 98 (200)
T 1ais_B 82 --DKKEIGRSYRFIARNLN 98 (200)
T ss_dssp --CHHHHHHHHHHHHHHTT
T ss_pred --CHHHHHHHHHHHHHHhc
Confidence 78999999999987654
No 288
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=28.53 E-value=27 Score=24.75 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACR 57 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~ 57 (193)
+|+..++ +..++++.|+|.+|..+.+... .|+ +.-.++-++
T Consensus 39 ~E~v~lI-R~sSLmNrG~Yq~Al~l~~~~c--~pd---lepw~ALce 79 (116)
T 2p58_C 39 EEAVQLI-RLSSLMNRGDYASALQQGNKLA--YPD---LEPWLALCE 79 (116)
T ss_dssp HHHHHHH-HHHHHHHTTCHHHHHHHHTTSC--CGG---GHHHHHHHH
T ss_pred HHHHHHH-HHHHHHcchhHHHHHHhcCCCC--Cch---HHHHHHHHH
Confidence 5555554 5678999999999999987665 444 444544444
No 289
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=27.80 E-value=29 Score=24.39 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=9.7
Q ss_pred ccccCCCCCCCCC
Q 048108 138 KLMSCSCCRPQGA 150 (193)
Q Consensus 138 f~~~c~~c~~~~~ 150 (193)
-...|..|+..+.
T Consensus 72 ~~~~C~~CG~~~e 84 (119)
T 2kdx_A 72 VELECKDCSHVFK 84 (119)
T ss_dssp CEEECSSSSCEEC
T ss_pred ceEEcCCCCCEEe
Confidence 3557888888876
No 290
>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB: 2e5t_A 2e5u_A
Probab=27.75 E-value=1.2e+02 Score=21.68 Aligned_cols=35 Identities=26% Similarity=0.262 Sum_probs=25.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHH
Q 048108 6 KNLVKLAAEKARDAAEEYFKL----QNIDMAIKTLKAAK 40 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~----~d~~~A~~~~~~a~ 40 (193)
.|.|.++|+..+++|+..++. .++..|..-+.+|.
T Consensus 86 ~diD~~~a~~a~~~Ae~~l~~~~~~~~~~~a~~al~rA~ 124 (133)
T 2e5y_A 86 EDIDVLRAKAAKERAERRLQSQQDDIDFKRAELALKRAM 124 (133)
T ss_dssp GGCCHHHHHHHHHHHHHHHTCCSSCCCHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHhhCcChHHHHHHHHHHHHHH
Confidence 467889999999999999974 34666655555543
No 291
>2hsb_A Hypothetical UPF0332 protein AF0298; DUF103 family, structural genomics, joint center for structu genomics, JCSG; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus}
Probab=27.61 E-value=1.1e+02 Score=20.87 Aligned_cols=31 Identities=23% Similarity=0.078 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKE 41 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~ 41 (193)
..|+.-++.|+..+..|+|..|...+..|..
T Consensus 10 ~~A~~~L~~A~~~~~~g~y~~a~~~ay~a~~ 40 (126)
T 2hsb_A 10 RKAEKLVQDAKKEFEMGLYERCCSTAYYAMF 40 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5788899999999999999977554444443
No 292
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=27.15 E-value=95 Score=19.71 Aligned_cols=44 Identities=18% Similarity=0.276 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhh
Q 048108 85 KKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRI 132 (193)
Q Consensus 85 k~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~ 132 (193)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++...++...
T Consensus 16 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~eeK~~y~~~A~ 59 (81)
T 1i11_A 16 AKDERRKILQAFPDMH----NSNISKILGSRWKAMTNLEKQPYYEEQA 59 (81)
T ss_dssp HHHHHHHHHTTCSSCC----HHHHHHHHHHHHTTSCSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHhhhhhCCHHHHHHHHHHHH
Confidence 3455666666788753 4678889999999999877666555443
No 293
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=26.97 E-value=1.1e+02 Score=25.70 Aligned_cols=34 Identities=21% Similarity=0.036 Sum_probs=27.5
Q ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 15 KARDAAEE-YFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 15 ~~~~~A~~-~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
-.|..|.. .++.++|.-|..|+.+..++.|+.+.
T Consensus 208 LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~ 242 (325)
T 3mv2_A 208 NALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPR 242 (325)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHH
Confidence 34445544 78999999999999999999998653
No 294
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.70 E-value=77 Score=26.98 Aligned_cols=43 Identities=26% Similarity=0.175 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc-HHHHHHHHHH
Q 048108 16 ARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN-IDDYFTACRV 58 (193)
Q Consensus 16 ~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~-i~~~l~~~~~ 58 (193)
.+.+|.-+++.||+++|.+.+.++.....+... ++-.+..++.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl 177 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARL 177 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 467889999999999999999999988777653 3333444443
No 295
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=26.48 E-value=42 Score=25.29 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=8.5
Q ss_pred ccccCccCCCcce
Q 048108 175 KAIFCQCQGRRKI 187 (193)
Q Consensus 175 ~~~~C~~C~~~~~ 187 (193)
.+..||.|+..+-
T Consensus 152 ~p~~CP~Cg~~~~ 164 (170)
T 3pwf_A 152 APEYCPVCGAPKE 164 (170)
T ss_dssp CCSBCTTTCCBGG
T ss_pred CCCCCCCCCCCHH
Confidence 3457888886554
No 296
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=26.12 E-value=48 Score=26.93 Aligned_cols=8 Identities=13% Similarity=0.385 Sum_probs=5.6
Q ss_pred cccCccCC
Q 048108 176 AIFCQCQG 183 (193)
Q Consensus 176 ~~~C~~C~ 183 (193)
..||+.|-
T Consensus 265 t~~CP~CQ 272 (273)
T 3u6p_A 265 THYCPRCQ 272 (273)
T ss_dssp EEECTTTC
T ss_pred eEECCCCC
Confidence 47888873
No 297
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=25.65 E-value=1.2e+02 Score=25.24 Aligned_cols=84 Identities=13% Similarity=0.057 Sum_probs=53.5
Q ss_pred cCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHHhhc------ccccchhhhhcCCCC
Q 048108 7 NLVKLAAEKARDAAEEYFKLQN--IDMAIKTLKAAKEFNPDLP-NIDDYFTACRVHQLS------ETKSTLYKILAITDP 77 (193)
Q Consensus 7 e~~~~ea~~~~~~A~~~~~~~d--~~~A~~~~~~a~~l~p~~~-~i~~~l~~~~~~~~~------~~~~d~Y~vLgv~~~ 77 (193)
|-+..+|...+...-..|...+ .+.|..+|.++........ .+..+++++ +.++- -.-.+..++++|
T Consensus 123 er~L~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAc-lYiACR~~~~prtl~eI~~~~~v--- 198 (345)
T 4bbr_M 123 DNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAAS-ILIGCRRAEVARTFKEIQSLIHV--- 198 (345)
T ss_dssp SSSTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHH-HHHHHHHTCCBCCHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHH-HHHHHHhcCCCccHHHHHHHhCC---
Confidence 3344567777777777777775 7889999999887665432 233333332 22221 111566677777
Q ss_pred CCCHHHHHHHHHHHHHhcC
Q 048108 78 QVDISVIKKQFKKMALMLH 96 (193)
Q Consensus 78 ~a~~~~Ik~aYr~l~~~~H 96 (193)
+..+|-+.|+.+.+.+.
T Consensus 199 --~~keigr~~k~l~~~L~ 215 (345)
T 4bbr_M 199 --KTKEFGKTLNIMKNILR 215 (345)
T ss_dssp --CTTHHHHHHHHHHHCC-
T ss_pred --CHHHHHHHHHHHHHHhC
Confidence 56899999999988775
No 298
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=25.44 E-value=1.1e+02 Score=22.47 Aligned_cols=32 Identities=19% Similarity=-0.056 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 048108 12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFN 43 (193)
Q Consensus 12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~ 43 (193)
-|..++..|..+...||.+.|--++.+-..|.
T Consensus 41 sa~~L~r~A~~y~~EGd~E~AYilymRy~~L~ 72 (144)
T 2a9u_A 41 SALKIFKTAEECRLDRDEERAYVLYMKYVTVY 72 (144)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999876664
No 299
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=25.28 E-value=1.3e+02 Score=18.80 Aligned_cols=42 Identities=12% Similarity=0.029 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhh
Q 048108 85 KKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDN 130 (193)
Q Consensus 85 k~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~ 130 (193)
.+..|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 18 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~~eK~~y~~~ 59 (77)
T 1hme_A 18 CSEYRPKIKGEHPGLS----IGDVAKKLGEMWNNTAADDKQPYEKK 59 (77)
T ss_dssp HHHHHHHHHHHCTTCC----HHHHHHHHHHHHHHSCGGGSHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3445555666688743 56788999999999997766555443
No 300
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=25.14 E-value=1.1e+02 Score=20.06 Aligned_cols=43 Identities=16% Similarity=0.175 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhh
Q 048108 85 KKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNR 131 (193)
Q Consensus 85 k~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~ 131 (193)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+..
T Consensus 19 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~eeK~~Y~~~A 61 (92)
T 2crj_A 19 LNERREQIRTRHPDLP----FPEITKMLGAEWSKLQPAEKQRYLDEA 61 (92)
T ss_dssp HHHHHHHHHHHCTTCC----HHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445666667788753 567888999999999988776655543
No 301
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=24.74 E-value=1e+02 Score=26.95 Aligned_cols=41 Identities=12% Similarity=0.033 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 048108 16 ARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTAC 56 (193)
Q Consensus 16 ~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~ 56 (193)
+.++.+.+.+.|.+++|+.+++++..+++..-++-..+..+
T Consensus 210 l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il 250 (449)
T 1b89_A 210 LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 250 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 34577889999999999999999999998875554444433
No 302
>2o8s_A AGR_C_984P; all alpha-helical protein, structural genomics, PSI-2, prote structure initiative; 2.40A {Agrobacterium tumefaciens} SCOP: a.295.1.1
Probab=24.64 E-value=20 Score=30.19 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc----------HHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHH
Q 048108 14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN----------IDDYFTACRVHQLSETKSTLYKILAITDPQVDISV 83 (193)
Q Consensus 14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~----------i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~ 83 (193)
.+++..|...+-.+|...++.++.|..+-++++++ ..++..++.-...... .. .......+
T Consensus 105 ~RLl~~AL~AfGLed~~~akaflkKVLesdlsD~~SfANkLsD~RY~~fA~AFnF~~~G~~--------~t-~~~~~~~~ 175 (323)
T 2o8s_A 105 TRLYNYALKAHGLEDMAYAKAFIRKVLTEGASDKNAFANKLSDNRYAELAKSLDFAGLGAA--------AT-ATEAAKSG 175 (323)
T ss_dssp HHHHHHHHHHTTGGGSTTCHHHHHHHHHHCSSSTTCGGGGSSSTHHHHHHHHTCHHHHGGG--------TT-SSTTTTHH
T ss_pred HHHHHHHHHhcCCchhhchHHHHHHHHhcCCCChHHHHHhhcCHHHHHHHHHcCCCCCCcc--------cc-cchHHHHH
Confidence 57889999999999999999999999999987643 2233222221110000 01 22334677
Q ss_pred HHHHHHHHHHhcCCCCCCCchHH--HHHH----HHHHHHHHcCCCchhhhhhhhhhh
Q 048108 84 IKKQFKKMALMLHPDKNSSVAAD--GAFK----LIRSANNVLTDPGKRKAFDNRIRL 134 (193)
Q Consensus 84 Ik~aYr~l~~~~HPDk~~~~~a~--~~f~----~i~~Ay~vLsd~~~R~~YD~~~~~ 134 (193)
|-..|.+..+.--..... ++.. -.|+ .|+.+|+||+|+..|...-..+.-
T Consensus 176 ivd~Y~~qtlE~~~Ge~n-egvRLALYF~R~a~~Its~ydILgD~~L~~Vv~TAlgL 231 (323)
T 2o8s_A 176 VIGNYARQTLEQEAGDDN-NGVRLALYFERKAPTIKSGLDFLADDALAQVFRTTFNL 231 (323)
T ss_dssp HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHSTTCCSHHHHHTSHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHhcCcC-HhHHHHHHHHhcCcccCCHHHHhCCHHHHHHHHHHcCC
Confidence 888886665544222111 1111 1233 366799999999998877655443
No 303
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=24.45 E-value=34 Score=33.13 Aligned_cols=13 Identities=15% Similarity=-0.128 Sum_probs=11.6
Q ss_pred ccCccCCCcceEe
Q 048108 177 IFCQCQGRRKIVI 189 (193)
Q Consensus 177 ~~C~~C~~~~~v~ 189 (193)
-.|+.|.|-|.+.
T Consensus 301 GaCp~C~G~G~~~ 313 (993)
T 2ygr_A 301 GACPDCSGLGIRK 313 (993)
T ss_dssp TBCTTTTTSCEEE
T ss_pred CCCCCCcCcccee
Confidence 6899999999886
No 304
>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A
Probab=24.42 E-value=1.4e+02 Score=21.54 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=24.0
Q ss_pred ccCCHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHH
Q 048108 6 KNLVKLAAEKARDAAEEYFKL-------QNIDMAIKTLKAAK 40 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~-------~d~~~A~~~~~~a~ 40 (193)
.|.|.++|+..+.+|+..++. .++..|..-+.+|.
T Consensus 85 ~dID~~~a~~a~~~Ae~~l~~~~~~~~~~~~~~a~~aL~rA~ 126 (138)
T 2rq6_A 85 DTIDLEKAKAEFAAAQAALAQAEQGESKQAKIQATQAFRRAR 126 (138)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHH
Confidence 467789999999999998753 34555554444443
No 305
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=24.38 E-value=90 Score=19.85 Aligned_cols=43 Identities=21% Similarity=0.177 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhh
Q 048108 85 KKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNR 131 (193)
Q Consensus 85 k~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~ 131 (193)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+..
T Consensus 18 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~~eK~~y~~~A 60 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH----NAELSKMLGKSWKALTLAEKRPFVEEA 60 (83)
T ss_dssp HHHHHHHHHHHCSSSC----HHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4556677777788854 467888999999999877665554433
No 306
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=24.36 E-value=68 Score=26.15 Aligned_cols=42 Identities=10% Similarity=-0.232 Sum_probs=34.9
Q ss_pred ccCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCc
Q 048108 6 KNLVKLAAEKARDAAEEYFKLQ--NIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~~--d~~~A~~~~~~a~~l~p~~~ 47 (193)
.+.|++....+..++......+ ++++|+.++.++...+|...
T Consensus 60 L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y 103 (306)
T 3dra_A 60 INELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY 103 (306)
T ss_dssp HHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC
T ss_pred HHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH
Confidence 3456677778888888888888 99999999999999999754
No 307
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=24.35 E-value=57 Score=20.67 Aligned_cols=14 Identities=14% Similarity=0.520 Sum_probs=9.8
Q ss_pred cccccCCCCCCCCC
Q 048108 137 VKLMSCSCCRPQGA 150 (193)
Q Consensus 137 ~f~~~c~~c~~~~~ 150 (193)
.....|..|+...+
T Consensus 19 ~v~Y~C~~Cg~~~~ 32 (63)
T 3h0g_L 19 TMIYLCADCGARNT 32 (63)
T ss_dssp CCCCBCSSSCCBCC
T ss_pred CeEEECCCCCCeee
Confidence 34567888877776
No 308
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=23.93 E-value=54 Score=24.07 Aligned_cols=40 Identities=13% Similarity=0.142 Sum_probs=20.2
Q ss_pred CCCCCCCcccccccCcceeeCCCC----------ccccccCccCCCcceE
Q 048108 149 GAGDNNSPRASTYKANNTSCPRKY----------RAKAIFCQCQGRRKIV 188 (193)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~c~~~~----------~~~~~~C~~C~~~~~v 188 (193)
+....-...++.|....+.|+.|. +....-|.+||.++.|
T Consensus 87 ~~~~~i~~~L~~yI~~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~~V 136 (139)
T 3cw2_K 87 FSSQVINTLMERFLKAYVECSTCKSLDTILKKEKKSWYIVCLACGAQTPV 136 (139)
T ss_dssp CCSCCSCSTTTTTSSCCSSCCSSSSSCCCSCSSCSTTTSSCCC-------
T ss_pred eCHHHHHHHHHHHHHHeeECCCCCCcCcEEEEeCCeEEEEecCCCCCCcc
Confidence 333444456677777777776654 3344789999987765
No 309
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=23.83 E-value=38 Score=27.42 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=12.2
Q ss_pred cccccCccCCCcceEec
Q 048108 174 AKAIFCQCQGRRKIVIL 190 (193)
Q Consensus 174 ~~~~~C~~C~~~~~v~~ 190 (193)
..+..|+.|+.+|..+.
T Consensus 154 ~~P~~Cp~C~~~~f~l~ 170 (279)
T 1ltl_A 154 TEPSLCSECGGRSFRLL 170 (279)
T ss_dssp CCCSCCTTTCCCCEEEC
T ss_pred cCCCcCCCCCCCCcEEe
Confidence 44568889999985543
No 310
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=23.38 E-value=1.4e+02 Score=25.02 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=25.9
Q ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108 16 ARDAAEE-YFKLQNIDMAIKTLKAAKEFNPDLP 47 (193)
Q Consensus 16 ~~~~A~~-~~~~~d~~~A~~~~~~a~~l~p~~~ 47 (193)
.|..|.. .++.++|.-|..|+.+..++.|..+
T Consensus 200 aLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 232 (320)
T 3mkr_B 200 VLRTALNLFFKLKNFRTAAAFARRLLELGPKPE 232 (320)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 3444444 7899999999999999999998754
No 311
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=22.97 E-value=85 Score=25.32 Aligned_cols=8 Identities=25% Similarity=0.592 Sum_probs=5.9
Q ss_pred ccCccCCC
Q 048108 177 IFCQCQGR 184 (193)
Q Consensus 177 ~~C~~C~~ 184 (193)
.||+.|-.
T Consensus 263 ~~CP~CQ~ 270 (271)
T 2xzf_A 263 HFCPVCQQ 270 (271)
T ss_dssp EECTTTSC
T ss_pred EECCCCCC
Confidence 78888853
No 312
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=22.62 E-value=1.4e+02 Score=18.39 Aligned_cols=39 Identities=8% Similarity=0.038 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhh
Q 048108 85 KKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDN 130 (193)
Q Consensus 85 k~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~ 130 (193)
.+.+|...+.-||+.. ..+..+.|.+.|..|++ |..|..
T Consensus 15 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~---K~~y~~ 53 (73)
T 3nm9_A 15 LNSARESIKRENPGIK----VTEVAKRGGELWRAMKD---KSEWEA 53 (73)
T ss_dssp HHHHHHHHHHHSSSCC----HHHHHHHHHHHHHHCSC---CHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHHcCCc---hHHHHH
Confidence 3455666677788764 46788899999999987 666653
No 313
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=22.58 E-value=2.1e+02 Score=21.12 Aligned_cols=69 Identities=14% Similarity=0.207 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccc--cchhhhhcCCCCCC--CHHHHHHHHHHHHHhcCCC
Q 048108 29 IDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETK--STLYKILAITDPQV--DISVIKKQFKKMALMLHPD 98 (193)
Q Consensus 29 ~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~--~d~Y~vLgv~~~~a--~~~~Ik~aYr~l~~~~HPD 98 (193)
+..|.+.+.++...+|....+...+..+...+..... .+|-.-|.. +|.- ..++=-...++|.+||+|+
T Consensus 72 L~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~-DP~rL~~ie~RL~~l~~L~RKyg~~ 144 (175)
T 4abx_A 72 IGEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAA-DPEALDRVEARLSALSKLKNKYGPT 144 (175)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3446667777777788776666666665544332111 333333333 2210 1123345678899999864
No 314
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=22.52 E-value=74 Score=20.87 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhh
Q 048108 85 KKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRI 132 (193)
Q Consensus 85 k~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~ 132 (193)
.+.+|...+.-||+. ...+..+.|.+.|..|++.++....+...
T Consensus 32 ~~~~r~~~k~~~P~~----~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~ 75 (90)
T 1wgf_A 32 SEEKRRQLQEERPEL----SESELTRLLARMWNDLSEKKKAKYKAREA 75 (90)
T ss_dssp HHHTHHHHHHHCTTS----CHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444566666678884 35678899999999999776665555443
No 315
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.26 E-value=59 Score=21.22 Aligned_cols=44 Identities=14% Similarity=0.031 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhh
Q 048108 85 KKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNR 131 (193)
Q Consensus 85 k~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~ 131 (193)
-..+|...+.-||+.. ...+..+.|.+.|..|++.++....+..
T Consensus 17 ~~e~R~~ik~~~P~~~---~~~eisK~lge~Wk~ls~eeK~~y~~~A 60 (81)
T 2d7l_A 17 LEENRSNILSDNPDFS---DEADIIKEGMIRFRVLSTEERKVWANKA 60 (81)
T ss_dssp HHHHHHHHHHHCTTCC---SHHHHHHHHHHHHSSSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCc---hhHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456777777899864 3568889999999999977765555443
No 316
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=21.51 E-value=1.4e+02 Score=24.28 Aligned_cols=37 Identities=3% Similarity=-0.037 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN 48 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~ 48 (193)
+...-++..|..+ ..+|+..|+..+.++.+++|+..+
T Consensus 5 ~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~D 41 (282)
T 4f3v_A 5 DRLASLFESAVSM-LPMSEARSLDLFTEITNYDESACD 41 (282)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhH
Confidence 3456677788886 699999999999999999999753
No 317
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.43 E-value=1.4e+02 Score=22.33 Aligned_cols=49 Identities=12% Similarity=0.019 Sum_probs=33.0
Q ss_pred HHHH-HHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC---c--cHHHHHHHHHHHhh
Q 048108 13 AEKA-RDAAEEYFKLQNIDMAIKTLKAAKE-FNPDL---P--NIDDYFTACRVHQL 61 (193)
Q Consensus 13 a~~~-~~~A~~~~~~~d~~~A~~~~~~a~~-l~p~~---~--~i~~~l~~~~~~~~ 61 (193)
+... +..|.-++..|++.+|.+.+.+|.. |.+.. . ++..++..++..+.
T Consensus 74 GLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~~~~GIDv~~L~~~~~~~l~ 129 (161)
T 2ijq_A 74 GMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPNDYYGVDLLDVRTTVTNALS 129 (161)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCTTGGGBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCccCCcCHHHHHHHHHHHhh
Confidence 3344 5566678999999999999999987 33221 1 46666666655443
No 318
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=21.42 E-value=50 Score=19.73 Aligned_cols=16 Identities=6% Similarity=0.154 Sum_probs=10.0
Q ss_pred cccccCccCCCcceEe
Q 048108 174 AKAIFCQCQGRRKIVI 189 (193)
Q Consensus 174 ~~~~~C~~C~~~~~v~ 189 (193)
...+.|+.|+.++.++
T Consensus 7 t~~~~Cp~Cg~~~a~f 22 (50)
T 1tfi_A 7 TDLFTCGKCKKKNCTY 22 (50)
T ss_dssp CCCSCCSSSCSSCEEE
T ss_pred eCccCCCCCCCCEEEE
Confidence 3445677777766655
No 319
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=21.18 E-value=1.1e+02 Score=19.74 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=22.0
Q ss_pred cccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048108 5 LKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKA 38 (193)
Q Consensus 5 ~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~ 38 (193)
.|=+++++|.++|.. ..+|++.|+.++..
T Consensus 38 eMGF~r~~a~~AL~~-----~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 38 AMGFDRTQVEVALAA-----ADDDLTVAVEILMS 66 (73)
T ss_dssp TTTCCHHHHHHHHHH-----HTSCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHH-----hCCCHHHHHHHHHH
Confidence 366788888888875 35789999888763
No 320
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=21.00 E-value=95 Score=21.47 Aligned_cols=34 Identities=15% Similarity=0.008 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKE 41 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~ 41 (193)
.+-.+|.-+.-.|-..-+.|||++|...+..|..
T Consensus 13 ~~aG~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 13 INSGQARSLAYAALKQAKQGDFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455677777778888899999999999988876
No 321
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=20.94 E-value=1.5e+02 Score=23.71 Aligned_cols=10 Identities=20% Similarity=0.351 Sum_probs=7.6
Q ss_pred ccCccCCCcc
Q 048108 177 IFCQCQGRRK 186 (193)
Q Consensus 177 ~~C~~C~~~~ 186 (193)
.||+.|-..|
T Consensus 256 ~~CP~CQ~~~ 265 (266)
T 1ee8_A 256 HFCPTCQGEG 265 (266)
T ss_dssp EECTTTTTCC
T ss_pred EECCCCCCCC
Confidence 7999997654
No 322
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=20.91 E-value=25 Score=24.83 Aligned_cols=41 Identities=12% Similarity=0.192 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 048108 11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACR 57 (193)
Q Consensus 11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~ 57 (193)
+|+..++ +..++++.|+|.+|..+.+... .|+ +.-.++-++
T Consensus 38 ~E~v~lI-R~sSLmNrG~Yq~Al~l~~~~c--~pd---lepw~ALce 78 (115)
T 2uwj_G 38 DEAARLI-RISSLANQGRYQEALAFAHGNP--WPA---LEPWFALCE 78 (115)
T ss_dssp HHHHHHH-HHHHHHHTTCHHHHHGGGTTCC--CGG---GHHHHHHHH
T ss_pred HHHHHHH-HHHHHHcchhHHHHHHhcCCCC--Cch---HHHHHHHHH
Confidence 5555554 5678999999999999887655 443 444544444
No 323
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=20.86 E-value=22 Score=24.94 Aligned_cols=43 Identities=16% Similarity=0.260 Sum_probs=26.8
Q ss_pred cccCCCCCCCCCCCCCCcccccccCcceeeCC----CCccccccCccCCCcce
Q 048108 139 LMSCSCCRPQGAGDNNSPRASTYKANNTSCPR----KYRAKAIFCQCQGRRKI 187 (193)
Q Consensus 139 ~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~----~~~~~~~~C~~C~~~~~ 187 (193)
...|.+|+..++ -...|..+.+.-+. |-.-.+..|+-||.+|.
T Consensus 36 ~~~C~FCrnNGE------~~~vy~SH~LKd~~G~V~CPvLR~Y~CpiCGATGd 82 (106)
T 3alr_A 36 RKFCSFCKHNGE------TEAVYTSHYLKNRDGDVMCPYLRQYKCPLCGATGA 82 (106)
T ss_dssp --CCHHHHHTTC------CHHHHTSBCSBCTTSCBCCTTGGGCCCTTTCCCGG
T ss_pred CCEeECCCCCCc------ccCccccceeECCCCCCcCCCcccccCCCCCCcCC
Confidence 456888888877 55566666665332 23344577888888773
No 324
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=20.77 E-value=36 Score=27.20 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=17.0
Q ss_pred CCCchhhhhhhhhhh------cccccccCCCCCCCC
Q 048108 120 TDPGKRKAFDNRIRL------NKVKLMSCSCCRPQG 149 (193)
Q Consensus 120 sd~~~R~~YD~~~~~------~~~f~~~c~~c~~~~ 149 (193)
-++..-..|++-... +......|..|+..-
T Consensus 173 i~~~lL~~Yerir~~~~g~avv~v~~~~C~GC~~~l 208 (256)
T 3na7_A 173 TEPKIYSFYERIRRWAKNTSIVTIKKQACGGCFIRL 208 (256)
T ss_dssp SCHHHHHHHHHHHHHHGGGSEEECBTTBCTTTCCBC
T ss_pred CCHHHHHHHHHHHHhCCCceEEEeeCCccCCCCeee
Confidence 366677788866642 222334566666544
No 325
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=20.77 E-value=1.7e+02 Score=21.68 Aligned_cols=109 Identities=15% Similarity=0.075 Sum_probs=58.7
Q ss_pred HHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc--HHHHHHHH-HHHh-hcccccchhhhhcCCCCCCCHHHH
Q 048108 10 KLAA-EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN--IDDYFTAC-RVHQ-LSETKSTLYKILAITDPQVDISVI 84 (193)
Q Consensus 10 ~~ea-~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~--i~~~l~~~-~~~~-~~~~~~d~Y~vLgv~~~~a~~~~I 84 (193)
.++. .+...+-..||..+|.++|...+.... .|.... ++..+..+ +..- ..+.-.....-| . ..-.+.++|
T Consensus 6 ~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~eL~--~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L-~-~~~ls~~~i 81 (165)
T 2rg8_A 6 ERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLN--LGEMKSGVPVLAVSLALEGKASHREMTSKLLSDL-C-GTVMSTTDV 81 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHT--CSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHH-B-TTTBCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhC--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-H-HCCCCHHHH
Confidence 4454 456678889999999999999998754 232210 22222211 1000 000002233334 4 555788999
Q ss_pred HHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhh
Q 048108 85 KKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRI 132 (193)
Q Consensus 85 k~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~ 132 (193)
.+.|..+.-.. .+...-+-.|++.|..=..|..-|..+
T Consensus 82 ~~Gf~~lle~l----------dDl~iDiP~a~~~la~fiarav~d~~l 119 (165)
T 2rg8_A 82 EKSFDKLLKDL----------PELALDTPRAPQLVGQFIARAVGDGIL 119 (165)
T ss_dssp HHHHHHHHHHH----------HHHHHHCTTHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhC----------hhhcccccchHHHHHHHHHHHHHcCCC
Confidence 99998887643 333444445555554444454444433
No 326
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=20.70 E-value=84 Score=22.95 Aligned_cols=78 Identities=13% Similarity=0.148 Sum_probs=40.6
Q ss_pred CCCCCchHHHHHHHHHH--HHHHcCCCchhhhhhhhhhhcccccccCCCCCCCCCCCCCCcccccccCcceeeCCCCccc
Q 048108 98 DKNSSVAADGAFKLIRS--ANNVLTDPGKRKAFDNRIRLNKVKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAK 175 (193)
Q Consensus 98 Dk~~~~~a~~~f~~i~~--Ay~vLsd~~~R~~YD~~~~~~~~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 175 (193)
||.+....--.|..+.+ .|+.-.++.....|+.... ....-..|..|+..+- . ....|+.|....
T Consensus 5 ~~~~~~~~~l~~~~~~e~~~y~~~~~~~~~~fw~~l~~-g~L~~~rC~~CG~~~f-------P-----Pr~~Cp~C~s~~ 71 (145)
T 2gnr_A 5 EKSGKEGSLLRWYDVMEAERYEYTVGPAGEQFFNGLKQ-NKIIGSKCSKCGRIFV-------P-----ARSYCEHCFVKI 71 (145)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHT-TCCEEEECTTTCCEEE-------S-----CCSEETTTTEEC
T ss_pred ccCCCccceEEeccEEEeEeeEcCCChhhHHHHhhhhC-CEEEEEEECCCCcEEe-------C-----CCCCCCCCCCCc
Confidence 34433333344544444 4776667777777766553 3445567888877652 1 124566665444
Q ss_pred cccCccCC-CcceEe
Q 048108 176 AIFCQCQG-RRKIVI 189 (193)
Q Consensus 176 ~~~C~~C~-~~~~v~ 189 (193)
..|-.. + |+|.|+
T Consensus 72 ~e~v~l-s~g~GtV~ 85 (145)
T 2gnr_A 72 ENYVEI-NKDEAYVD 85 (145)
T ss_dssp CEEEEC-CGGGCEEE
T ss_pred cEEEEc-cCCcEEEE
Confidence 444333 4 666664
No 327
>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, membrane binding, virulence gangrene determinant, C2 domain; 1.80A {Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A
Probab=20.55 E-value=1.5e+02 Score=25.31 Aligned_cols=33 Identities=18% Similarity=0.059 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
+.++.++.++|..+++.|++..|.-+|..|.-+
T Consensus 95 ~~~~~ky~~~A~~~~~~g~~~~A~~~LG~a~Hy 127 (370)
T 2wxu_A 95 ESQIRKFSALARYEWQRGNYKQATFYLGEAMHY 127 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999874
No 328
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=20.37 E-value=2e+02 Score=19.13 Aligned_cols=44 Identities=16% Similarity=0.111 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhh
Q 048108 85 KKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRI 132 (193)
Q Consensus 85 k~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~ 132 (193)
.+..|...+.-||+.. ..+..+.|.+.|..|++.++....+...
T Consensus 22 ~~~~r~~ik~~~P~~~----~~eisk~lg~~Wk~ls~eeK~~Y~~~A~ 65 (99)
T 1k99_A 22 FMEKRAKYAKLHPEMS----NLDLTKILSKKYKELPEKKKMKYIQDFQ 65 (99)
T ss_dssp HHHHHHHHHTTCTTSC----SHHHHHHHHHHHHHSCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3445666666788754 3578889999999999888766665444
No 329
>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A {Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J 1bsh_A 1bsn_A 1fs0_E 3oaa_H*
Probab=20.36 E-value=1.1e+02 Score=22.04 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=18.3
Q ss_pred ccCCHHHHHHHHHHHHHHHHc
Q 048108 6 KNLVKLAAEKARDAAEEYFKL 26 (193)
Q Consensus 6 ~e~~~~ea~~~~~~A~~~~~~ 26 (193)
.|.|.++|+..+++|+..++.
T Consensus 87 ~diD~~~a~~a~~~Ae~~l~~ 107 (138)
T 1aqt_A 87 QDLDEARAMEAKRKAEEHISS 107 (138)
T ss_dssp GGCCHHHHHHHHHHHHHHHTT
T ss_pred hhCCHHHHHHHHHHHHHHHhh
Confidence 467889999999999999874
No 330
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=20.28 E-value=1e+02 Score=21.43 Aligned_cols=34 Identities=12% Similarity=-0.161 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
+-.+|.-+.-.|-..-+.|||++|...+..|...
T Consensus 16 ~aG~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~~ 49 (105)
T 2e2a_A 16 YAGDARSKLLEALKAAENGDFAKADSLVVEAGSC 49 (105)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3456666777777888999999999999988763
No 331
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=20.15 E-value=1e+02 Score=21.59 Aligned_cols=35 Identities=23% Similarity=0.078 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108 8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEF 42 (193)
Q Consensus 8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l 42 (193)
.+-.+|.-+.-.|-...+.|||+.|...+..|...
T Consensus 17 ~~aG~Ars~~~eAl~~Ak~gdfe~A~~~l~eA~~~ 51 (109)
T 3k1s_A 17 LNSGNARSFAMEALQFAKQGKMAEADEAMVKAKEA 51 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34456666777777788899999999999888653
Done!