BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048111
(304 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 327 bits (838), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 157/304 (51%), Positives = 209/304 (68%), Gaps = 5/304 (1%)
Query: 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYAT 60
WWKDL+F KLP+ARDRVVE YFWI GVYFEP+YSL RK+L K+ +M SI+D YD YAT
Sbjct: 256 WWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYAT 315
Query: 61 PKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEM 120
+EL +T AI+RWD+ C+D++PEYM+ Y+ALLD+Y+E+ + +A G YRV YAK M
Sbjct: 316 YEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAM 375
Query: 121 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSE 180
L Y E+KW NY P+ EE+ +L T Y+ML SF+GM +VT E F W +
Sbjct: 376 IRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAAS 435
Query: 181 KPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKK 240
P+II+ASTII R ++D+ HKF+ R SAIECYM+E VT QE ++ K
Sbjct: 436 DPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEE-----YGVTAQEAYDVFNKH 490
Query: 241 VGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLIH 300
V AWKD+N+E L PTE+P +L R LNL+RV+D++Y+E D YT+VG+ K I S+LI
Sbjct: 491 VESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIE 550
Query: 301 PVAI 304
P+A+
Sbjct: 551 PIAL 554
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 265 bits (678), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 137/305 (44%), Positives = 201/305 (65%), Gaps = 7/305 (2%)
Query: 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYAT 60
WWKDL+F LP+ARDRVVE YFW +GVYFEP+YS AR +L K SM SI+D +D Y T
Sbjct: 252 WWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 311
Query: 61 PKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEM 120
KEL+ +T AI RWD++ +D+LP+YM+I Y+A+LDLYK+ E+EL++ G S+ V +A E M
Sbjct: 312 VKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERM 371
Query: 121 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSE 180
K +V Y+ ES WF Y P + EY+ +L T+ Y +L S+LGM S T++ F+W+S+
Sbjct: 372 KEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGMKS-ATEQDFEWLSK 430
Query: 181 KPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKK 240
P+I+ AS II R+++D +++ E+ RG A+ IEC M++ ++ +E +
Sbjct: 431 NPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD-----YGISTKEAMAKFQNM 485
Query: 241 VGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIY-KEADDYTHVGQVMKDNIASVLI 299
AWKDINE L PT V L +LNL+R+I++ Y D YTH +V+K +I ++L+
Sbjct: 486 AETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLV 545
Query: 300 HPVAI 304
+ I
Sbjct: 546 DSIKI 550
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 265 bits (676), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 136/305 (44%), Positives = 200/305 (65%), Gaps = 7/305 (2%)
Query: 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYAT 60
WWKDL+F LP+ARDRVVE YFW +GVYFEP+YS AR +L K SM SI+D +D Y T
Sbjct: 252 WWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 311
Query: 61 PKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEM 120
KEL+ +T AI RWD++ +D+LP+YM+I Y+A+LDLYK+ E+EL++ G S+ V +A E M
Sbjct: 312 VKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERM 371
Query: 121 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSE 180
K +V Y+ ES WF Y P + EY+ +L T+ Y L S+LGM S T++ F+W+S+
Sbjct: 372 KEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSK 430
Query: 181 KPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKK 240
P+I+ AS II R+++D +++ E+ RG A+ IEC M++ ++ +E +
Sbjct: 431 NPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD-----YGISTKEAMAKFQNM 485
Query: 241 VGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIY-KEADDYTHVGQVMKDNIASVLI 299
AWKDINE L PT V L +LNL+R++++ Y D YTH +V+K +I ++L+
Sbjct: 486 AETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLV 545
Query: 300 HPVAI 304
+ I
Sbjct: 546 DSIKI 550
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 265 bits (676), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 136/305 (44%), Positives = 200/305 (65%), Gaps = 7/305 (2%)
Query: 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYAT 60
WWKDL+F LP+ARDRVVE YFW +GVYFEP+YS AR +L K SM SI+D +D Y T
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 309
Query: 61 PKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEM 120
KEL+ +T AI RWD++ +D+LP+YM+I Y+A+LDLYK+ E+EL++ G S+ V +A E M
Sbjct: 310 VKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERM 369
Query: 121 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSE 180
K +V Y+ ES WF Y P + EY+ +L T+ Y L S+LGM S T++ F+W+S+
Sbjct: 370 KEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSK 428
Query: 181 KPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKK 240
P+I+ AS II R+++D +++ E+ RG A+ IEC M++ ++ +E +
Sbjct: 429 NPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD-----YGISTKEAMAKFQNM 483
Query: 241 VGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIY-KEADDYTHVGQVMKDNIASVLI 299
AWKDINE L PT V L +LNL+R++++ Y D YTH +V+K +I ++L+
Sbjct: 484 AETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLV 543
Query: 300 HPVAI 304
+ I
Sbjct: 544 DSIKI 548
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 265 bits (676), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 136/305 (44%), Positives = 200/305 (65%), Gaps = 7/305 (2%)
Query: 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYAT 60
WWKDL+F LP+ARDRVVE YFW +GVYFEP+YS AR +L K SM SI+D +D Y T
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 309
Query: 61 PKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEM 120
KEL+ +T AI RWD++ +D+LP+YM+I Y+A+LDLYK+ E+EL++ G S+ V +A E M
Sbjct: 310 VKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERM 369
Query: 121 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSE 180
K +V Y+ ES WF Y P + EY+ +L T+ Y L S+LGM S T++ F+W+S+
Sbjct: 370 KEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSK 428
Query: 181 KPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKK 240
P+I+ AS II R+++D +++ E+ RG A+ IEC M++ ++ +E +
Sbjct: 429 NPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD-----YGISTKEAMAKFQNM 483
Query: 241 VGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIY-KEADDYTHVGQVMKDNIASVLI 299
AWKDINE L PT V L +LNL+R++++ Y D YTH +V+K +I ++L+
Sbjct: 484 AETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLV 543
Query: 300 HPVAI 304
+ I
Sbjct: 544 DSIKI 548
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 265 bits (676), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 136/305 (44%), Positives = 200/305 (65%), Gaps = 7/305 (2%)
Query: 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYAT 60
WWKDL+F LP+ARDRVVE YFW +GVYFEP+YS AR +L K SM SI+D +D Y T
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 309
Query: 61 PKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEM 120
KEL+ +T AI RWD++ +D+LP+YM+I Y+A+LDLYK+ E+EL++ G S+ V +A E M
Sbjct: 310 VKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERM 369
Query: 121 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSE 180
K +V Y+ ES WF Y P + EY+ +L T+ Y L S+LGM S T++ F+W+S+
Sbjct: 370 KEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSK 428
Query: 181 KPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKK 240
P+I+ AS II R+++D +++ E+ RG A+ IEC M++ ++ +E +
Sbjct: 429 NPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD-----YGISTKEAMAKFQNM 483
Query: 241 VGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIY-KEADDYTHVGQVMKDNIASVLI 299
AWKDINE L PT V L +LNL+R++++ Y D YTH +V+K +I ++L+
Sbjct: 484 AETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLV 543
Query: 300 HPVAI 304
+ I
Sbjct: 544 DSIKI 548
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 264 bits (675), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 136/305 (44%), Positives = 200/305 (65%), Gaps = 7/305 (2%)
Query: 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYAT 60
WWKDL+F LP+ARDRVVE YFW +GVYFEP+YS AR +L K SM SI+D +D Y T
Sbjct: 237 WWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 296
Query: 61 PKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEM 120
KEL+ +T AI RWD++ +D+LP+YM+I Y+A+LDLYK+ E+EL++ G S+ V +A E M
Sbjct: 297 VKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERM 356
Query: 121 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSE 180
K +V Y+ ES WF Y P + EY+ +L T+ Y L S+LGM S T++ F+W+S+
Sbjct: 357 KEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSK 415
Query: 181 KPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKK 240
P+I+ AS II R+++D +++ E+ RG A+ IEC M++ ++ +E +
Sbjct: 416 NPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD-----YGISTKEAMAKFQNM 470
Query: 241 VGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIY-KEADDYTHVGQVMKDNIASVLI 299
AWKDINE L PT V L +LNL+R++++ Y D YTH +V+K +I ++L+
Sbjct: 471 AETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLV 530
Query: 300 HPVAI 304
+ I
Sbjct: 531 DSIKI 535
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 263 bits (673), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 136/305 (44%), Positives = 200/305 (65%), Gaps = 7/305 (2%)
Query: 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYAT 60
WWKDL+F LP+ARDRVVE YFW +GVYFEP+YS AR +L K SM SI+D +D Y T
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 309
Query: 61 PKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEM 120
KEL+ +T AI RWD++ +D+LP+YM+I Y+A+LDLYK+ E+EL++ G S+ V +A E M
Sbjct: 310 VKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERM 369
Query: 121 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSE 180
K +V Y+ ES WF Y P + EY+ +L T+ Y L S+LGM S T++ F+W+S+
Sbjct: 370 KEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSK 428
Query: 181 KPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKK 240
P+I+ AS II R+++D +++ E+ RG A+ IEC M++ ++ +E +
Sbjct: 429 NPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRD-----YGISTKEAMAKFQNM 483
Query: 241 VGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIY-KEADDYTHVGQVMKDNIASVLI 299
AWKDINE L PT V L +LNL+R++++ Y D YTH +V+K +I ++L+
Sbjct: 484 AETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLV 543
Query: 300 HPVAI 304
+ I
Sbjct: 544 DSIKI 548
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 260 bits (664), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 135/305 (44%), Positives = 199/305 (65%), Gaps = 7/305 (2%)
Query: 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYAT 60
WWKDL+F LP+ARDRVVE YF +GVYFEP+YS AR +L K SM SI+D +D Y T
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 309
Query: 61 PKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEM 120
KEL+ +T AI RWD++ +D+LP+YM+I Y+A+LDLYK+ E+EL++ G S+ V +A E M
Sbjct: 310 VKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERM 369
Query: 121 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSE 180
K +V Y+ ES WF Y P + EY+ +L T+ Y L S+LGM S T++ F+W+S+
Sbjct: 370 KEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSK 428
Query: 181 KPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKK 240
P+I+ AS II R+++D +++ E+ RG A+ IEC M++ ++ +E +
Sbjct: 429 NPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD-----YGISTKEAMAKFQNM 483
Query: 241 VGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIY-KEADDYTHVGQVMKDNIASVLI 299
AWKDINE L PT V L +LNL+R++++ Y D YTH +V+K +I ++L+
Sbjct: 484 AETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLV 543
Query: 300 HPVAI 304
+ I
Sbjct: 544 DSIKI 548
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 259 bits (661), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 135/305 (44%), Positives = 199/305 (65%), Gaps = 7/305 (2%)
Query: 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYAT 60
WWKDL+F LP+ARDRVVE YF +GVYFEP+YS AR +L K SM SI+D +D Y T
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 309
Query: 61 PKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEM 120
KEL+ +T AI RWD++ +D+LP+YM+I Y+A+LDLYK+ E+EL++ G S+ V +A E M
Sbjct: 310 VKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERM 369
Query: 121 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSE 180
K +V Y+ ES WF Y P + EY+ +L T+ Y L S+LGM S T++ F+W+S+
Sbjct: 370 KEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSK 428
Query: 181 KPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKK 240
P+I+ AS II R+++D +++ E+ RG A+ IEC M++ ++ +E +
Sbjct: 429 NPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRD-----YGISTKEAMAKFQNM 483
Query: 241 VGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIY-KEADDYTHVGQVMKDNIASVLI 299
AWKDINE L PT V L +LNL+R++++ Y D YTH +V+K +I ++L+
Sbjct: 484 AETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLV 543
Query: 300 HPVAI 304
+ I
Sbjct: 544 DSIKI 548
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 168/303 (55%), Gaps = 7/303 (2%)
Query: 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYAT 60
WW+ + A KL FARDR++ES++W VGV FEP+YS R +AK+FS +IID IYDVY T
Sbjct: 254 WWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGT 313
Query: 61 PKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIE-EELATKGWSYRVHYAKEE 119
EL+LFT A++RWD++ ++ LP+YM++ + AL + EI + L KG + + Y +
Sbjct: 314 LDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENI-LPYLTKA 372
Query: 120 MKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVS 179
L + + E+KW +N PT ++Y + +S+ + ++ + + KE + +
Sbjct: 373 WADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQ 432
Query: 180 EKPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYK 239
+ II + I RL ND+ S E RG A+++ CYM+ K ++++ E +
Sbjct: 433 KYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTK-----GISEELATESVMN 487
Query: 240 KVGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLI 299
+ + WK +N+E L + + + +NL+R Y D +T ++ + + SV+
Sbjct: 488 LIDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVIT 547
Query: 300 HPV 302
P+
Sbjct: 548 EPI 550
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 158/304 (51%), Gaps = 6/304 (1%)
Query: 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYAT 60
WW L F KLPF RDR+VES+FW VG++ ++ RK+ A I + ++ID IYDVY T
Sbjct: 251 WWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGT 310
Query: 61 PKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEM 120
EL+LFT RWD + +LP YMQ+ Y + + + ++ + + + Y ++ +
Sbjct: 311 LDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSV 370
Query: 121 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEA-FDWVS 179
LV Y E+KW+H+ Y P+++EY+ ++ ++ A + + ++ + A D +
Sbjct: 371 VDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLY 430
Query: 180 EKPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYK 239
+ I+ + II RL +D+ + FE RG I+CYMKE + +++E E +
Sbjct: 431 QYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKE-----TNASEEEAVEHVKF 485
Query: 240 KVGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLI 299
+ +AWKD+N P ++ N+ RV IY D + ++IA +L
Sbjct: 486 LIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLF 545
Query: 300 HPVA 303
P A
Sbjct: 546 EPYA 549
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 170/307 (55%), Gaps = 8/307 (2%)
Query: 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYAT 60
W++D FAR+R +E YF + +EP+Y+ R L K+ + +++D +YD Y T
Sbjct: 516 WFRDSGLP-LFTFARERPLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGT 574
Query: 61 PKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEM 120
EL LFT A+ RWD+S + LP+YM++ Y+ D+ E+ E + V + ++
Sbjct: 575 LDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGW 634
Query: 121 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDS-VVTKEAFDWVS 179
+ + GY++E++W YVPT++EY++ + + +L + L MD ++++EA + V
Sbjct: 635 EDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVD 694
Query: 180 EKPR--IIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEEL 237
R + +++I RL +D K++K E+ RG AS+IECYMK+ T++E + +
Sbjct: 695 YPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPE----CTEEEALDHI 750
Query: 238 YKKVGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASV 297
Y + A K++ E L P +VP A + +RV +I+K+ D + +KD+I
Sbjct: 751 YSILEPAVKELTREFLKPDDVPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKEC 810
Query: 298 LIHPVAI 304
LI P+ +
Sbjct: 811 LIEPLPL 817
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 162/302 (53%), Gaps = 9/302 (2%)
Query: 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYAT 60
WW +LPF RDR+VE Y+W GV ++ R +L KI ++ + ID ++D+Y T
Sbjct: 272 WWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGT 331
Query: 61 PKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIE-EELATKGWSYRVHYAKEE 119
+EL LFT AI RWD+ M QLP YMQI Y AL + E+ + L KG+ Y ++
Sbjct: 332 LEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFD-STPYLRKV 390
Query: 120 MKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVS 179
L+ Y E+KW++ + P++EEYM+ S ++ + + F + + +EA + +
Sbjct: 391 WVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMH 450
Query: 180 EKPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYK 239
+ I+RAS I RL +D+ + E ERG +++CYM EK + +++E E +
Sbjct: 451 KYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEK-----NASEEEAREHVRS 505
Query: 240 KVGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYK-EADDYTHVGQVMKDNIASVL 298
+ WK +N+E +M + + + NL+R+ IY+ E+D + ++ + +L
Sbjct: 506 LIDQTWKMMNKE-MMTSSFSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDLL 564
Query: 299 IH 300
H
Sbjct: 565 FH 566
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 163/304 (53%), Gaps = 7/304 (2%)
Query: 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYAT 60
WWK F L F R+RV E YF FEPE+S R++ K + T I+D +YD + +
Sbjct: 488 WWKSSGFT-DLNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGS 546
Query: 61 PKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEM 120
+L LFT ++ RWD+S +DQ+P+ M+I + + + +I +E + + Y +
Sbjct: 547 LDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVW 606
Query: 121 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSE 180
K+ + Y E++W YVP+ EY+ + V+ A + S L V+T E +
Sbjct: 607 KVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDR 666
Query: 181 KPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKK 240
+ R ++ + GRLVND K+++ E+ +G ASAI+CYMK+ + ++++E + +Y
Sbjct: 667 ESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPK----ISEEEALQHVYSV 722
Query: 241 VGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQV-MKDNIASVLI 299
+ +A +++N E + ++P V +R++ + Y + D T + +K+++ + L
Sbjct: 723 MENALEELNRE-FVNNKIPDIYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLF 781
Query: 300 HPVA 303
PVA
Sbjct: 782 QPVA 785
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 157 bits (398), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 162/305 (53%), Gaps = 8/305 (2%)
Query: 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYAT 60
WW++ F KLPFARDR+VE YFW G+ +++ AR ++ K+ ++ ++ID IYDVY T
Sbjct: 245 WWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGT 304
Query: 61 PKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEM 120
+EL+ FT I RWD++ +DQLP+YMQ+ + AL + + ++ + + Y ++
Sbjct: 305 LEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSW 364
Query: 121 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVT-SAYSMLTAASFLGMDSVVTKEAFDWVS 179
L Y E++WF+ + P++EEY+ S + S MLT F DS TKE D +
Sbjct: 365 VDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDS-FTKETVDSLY 423
Query: 180 EKPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYK 239
+ ++R S+ + RL +D+ + E RG +++CYM + + ++ E + +
Sbjct: 424 KYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSD-----YNASEAEARKHVKW 478
Query: 240 KVGDAWKDINEECLMP-TEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVL 298
+ + WK +N E + + + + ++L R+ ++Y D + ++ + L
Sbjct: 479 LIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTL 538
Query: 299 IHPVA 303
P A
Sbjct: 539 FEPFA 543
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 145/305 (47%), Gaps = 8/305 (2%)
Query: 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYAT 60
WWK+ A + F R RV E YF FEPEYS R KI + + D + D++AT
Sbjct: 459 WWKESGMA-DINFTRHRVAEVYF--SSATFEPEYSATRIAFTKIGCLQVLFDDMADIFAT 515
Query: 61 PKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEM 120
EL FT + RWD S + ++PE MQ ++ L +E+ ++ + + ++
Sbjct: 516 LDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPW 575
Query: 121 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSE 180
++ + Y E +W Y+PT EEY++ ++ T L M +V + + V
Sbjct: 576 ELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHY 635
Query: 181 KPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKK 240
+ ++ RL ND K+++ E+ RG AS I CYMK+ T+++ + + +
Sbjct: 636 PSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNP----GATEEDAIKHICRV 691
Query: 241 VGDAWKDINEECLMPT-EVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLI 299
V A K+ + E P+ ++P + NL + I YK D Y + +KD I V I
Sbjct: 692 VDRALKEASFEYFKPSNDIPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYI 751
Query: 300 HPVAI 304
P+ +
Sbjct: 752 DPIQV 756
>pdb|1VYV|A Chain A, Beta4 Subunit Of Ca2+ Channel
pdb|1VYV|B Chain B, Beta4 Subunit Of Ca2+ Channel
Length = 359
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 265 RVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLIH 300
R+ L+R + ++ +AD H Q++K ++A +++H
Sbjct: 249 RIFELARSLQLVVLDADTINHPAQLIKTSLAPIIVH 284
>pdb|1NMP|A Chain A, Structural Genomics, Ybgi Protein, Unknown Function
pdb|1NMP|B Chain B, Structural Genomics, Ybgi Protein, Unknown Function
pdb|1NMP|C Chain C, Structural Genomics, Ybgi Protein, Unknown Function
pdb|1NMP|D Chain D, Structural Genomics, Ybgi Protein, Unknown Function
pdb|1NMP|E Chain E, Structural Genomics, Ybgi Protein, Unknown Function
pdb|1NMP|F Chain F, Structural Genomics, Ybgi Protein, Unknown Function
Length = 247
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 148 VSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSEKP--RIIRASTIIGRLVNDIK 199
V+ VT++ ++L A LG D+V+ + W E P R ++ + + L NDI
Sbjct: 39 VTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDIN 92
>pdb|3IYD|D Chain D, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
Length = 1413
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 147 RVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIKSHKFEQE 206
+ SL T ++ ++AASF V+T+ A ++ R ++ + I+GRL+ + + Q+
Sbjct: 1311 KASLATESF--ISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368
Query: 207 R 207
R
Sbjct: 1369 R 1369
>pdb|3LU0|D Chain D, Molecular Model Of Escherichia Coli Core Rna Polymerase
pdb|4IGC|D Chain D, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
pdb|4IGC|I Chain I, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
Length = 1407
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 147 RVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIKSHKFEQE 206
+ SL T ++ ++AASF V+T+ A ++ R ++ + I+GRL+ + + Q+
Sbjct: 1311 KASLATESF--ISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368
Query: 207 R 207
R
Sbjct: 1369 R 1369
>pdb|3LLL|A Chain A, Crystal Structure Of Mouse Pacsin2 F-Bar Domain
pdb|3LLL|B Chain B, Crystal Structure Of Mouse Pacsin2 F-Bar Domain
Length = 287
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 38 RKLLAKIFSMTSIIDYIYDVYATP-KELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDL 96
+KL KI + D Y KELD T M M+Q+ E Q F E L
Sbjct: 173 KKLQDKIEKCKQDVLKTKDKYEKSLKELDQTTPQY----MENMEQVFEQCQQFEEKRLRF 228
Query: 97 YKEIEEELA-----TKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTM 142
++E+ E+ + SY+ Y + E I ++ +WF N+ P M
Sbjct: 229 FREVLLEVQKHLDLSNVASYKTIYRELEQSIKAADAVEDLRWFRANHGPGM 279
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 94 LDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTME--EYMRVSLV 151
LD+YK E+ S + Y ++ + V G HD N Y+ +E + ++ +
Sbjct: 57 LDIYKHQFSEVT----SLKRKYPHLKVLLSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFI 112
Query: 152 TSAYSMLTAASFLGMDSVVTKEAFDWVSEKPRIIRA 187
SAY ++ F G+D A+ + KPR +
Sbjct: 113 RSAYELVKTYGFDGLDL-----AYQFPKNKPRKVHG 143
>pdb|1NMO|A Chain A, Structural Genomics, Protein Ybgi, Unknown Function
pdb|1NMO|B Chain B, Structural Genomics, Protein Ybgi, Unknown Function
pdb|1NMO|C Chain C, Structural Genomics, Protein Ybgi, Unknown Function
pdb|1NMO|D Chain D, Structural Genomics, Protein Ybgi, Unknown Function
pdb|1NMO|E Chain E, Structural Genomics, Protein Ybgi, Unknown Function
pdb|1NMO|F Chain F, Structural Genomics, Protein Ybgi, Unknown Function
Length = 247
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 148 VSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSEKP--RIIRASTIIGRLVNDIK 199
V+ VT++ ++L A LG D+V+ + W E P R + + + L NDI
Sbjct: 39 VTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGXKRNRLKTLLANDIN 92
>pdb|3UGV|A Chain A, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|B Chain B, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|C Chain C, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|D Chain D, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|E Chain E, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|F Chain F, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|G Chain G, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|H Chain H, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
Length = 390
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 99 EIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEY--MRVSLVTSAYS 156
+IE E G +Y Y + MK LV HD S + E Y R SL Y+
Sbjct: 62 DIETEEGVPGRAYLEPYVPKAMKYLVPALHDMSDMLAGQPLAPAEIYDKTRKSLHFVGYA 121
Query: 157 MLTAASFLGMDSVV 170
L+ + G+D V
Sbjct: 122 GLSMIAASGVDMAV 135
>pdb|1G59|A Chain A, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1G59|C Chain C, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1GLN|A Chain A, Architectures Of Class-Defining And Specific Domains Of
Glutamyl-Trna Synthetase
Length = 468
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 94 LDLYKEIEEELATKGWSYRVHYAKEEMK 121
L LY++ EEL +GW+YR EE++
Sbjct: 86 LPLYQKYAEELLKRGWAYRAFETPEELE 113
>pdb|1J09|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Atp And Glu
pdb|1N75|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Atp.
pdb|1N77|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Atp.
pdb|1N77|B Chain B, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Atp.
pdb|1N78|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Glutamol-Amp.
pdb|1N78|B Chain B, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Glutamol-Amp.
pdb|2CUZ|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With L-Glutamate
pdb|2CV0|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And L-Glutamate
pdb|2CV0|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And L-Glutamate
pdb|2CV1|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu), Atp, And An Analog Of
L-Glutamate: A Quaternary Complex
pdb|2CV1|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu), Atp, And An Analog Of
L-Glutamate: A Quaternary Complex
pdb|2CV2|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And An Enzyme Inhibitor, Glu-Ams
pdb|2CV2|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And An Enzyme Inhibitor, Glu-Ams
pdb|2DXI|A Chain A, 2.2 A Crystal Structure Of Glutamyl-Trna Synthetase From
Thermus Thermophilus Complexed With Trna(Glu), Atp, And
L- Glutamol
pdb|2DXI|B Chain B, 2.2 A Crystal Structure Of Glutamyl-Trna Synthetase From
Thermus Thermophilus Complexed With Trna(Glu), Atp, And
L- Glutamol
Length = 468
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 94 LDLYKEIEEELATKGWSYRVHYAKEEMK 121
L LY++ EEL +GW+YR EE++
Sbjct: 86 LPLYQKYAEELLKRGWAYRAFETPEELE 113
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus
Horikoshi
pdb|2DEI|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pnp And Galactose
pdb|2DEJ|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pn And Galactose
Length = 350
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 92 ALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTM 142
++L Y + ELA+ ++ R H A+E +KIL G E + + +P +
Sbjct: 181 SILVFYTGVRRELASSEYAERKHIAEESLKILGKGSSKEVREGELSKLPPL 231
>pdb|4HPQ|B Chain B, Crystal Structure Of The Atg17-Atg31-Atg29 Complex
pdb|4HPQ|E Chain E, Crystal Structure Of The Atg17-Atg31-Atg29 Complex
Length = 159
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 213 AIECYMKEKEREGVSVTQQEVHEELYKKVGDAWKDINEECLMPT---EVPRALLMRVLNL 269
AIE + + E + VTQ E+ + +K+VG +D NE C+ E PR L L L
Sbjct: 67 AIENVVIIEADESLRVTQVEMISDQFKQVGYEVRDGNEVCIDAMSRFETPRQL--GNLPL 124
Query: 270 SRVIDIIYKEADDYTH 285
+++ +YK +D H
Sbjct: 125 EKLVQ-LYKLQNDQLH 139
>pdb|2DJ6|A Chain A, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3
pdb|2DJ6|B Chain B, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3
pdb|2DJ6|C Chain C, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3
pdb|2DTT|A Chain A, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
pdb|2DTT|B Chain B, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
pdb|2DTT|C Chain C, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
pdb|2DTT|D Chain D, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
pdb|2DTT|E Chain E, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
pdb|2DTT|F Chain F, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
Length = 115
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 240 KVGDAWKDINE-----ECLMPTEVPRALLMRVLNLSRVIDIIYKEAD 281
KVGD W+D++ E + E+ +M L L ++++ I KE D
Sbjct: 18 KVGDHWEDVHGHTFFLEVAIEGEIKNGYVMDFLELRKIVEEITKELD 64
>pdb|1NJ1|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Cysteine
Sulfamoyl Adenylate
pdb|1NJ2|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus
pdb|1NJ5|A Chain A, Crystal Structure Of Prolyl-trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Proline
Sulfamoyl Adenylate
pdb|1NJ6|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Alanine
Sulfamoyl Adenylate
Length = 501
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 61 PKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGW 109
P++L+ A I R D +++ +Q E L +L K+I E L T+ W
Sbjct: 378 PRDLEKGAAVISRRDTG--EKVTADLQGIEETLRELMKDILENLRTRAW 424
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,157,737
Number of Sequences: 62578
Number of extensions: 371040
Number of successful extensions: 1038
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 973
Number of HSP's gapped (non-prelim): 42
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)