Query 048111
Match_columns 304
No_of_seqs 179 out of 814
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 10:45:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048111.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048111hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 1.9E-91 6.5E-96 685.4 25.8 299 1-304 256-554 (554)
2 3m00_A Aristolochene synthase; 100.0 2.1E-90 7.2E-95 677.5 26.1 298 1-304 252-550 (550)
3 3n0f_A Isoprene synthase; terp 100.0 2.1E-90 7.1E-95 678.9 25.2 298 1-303 254-551 (555)
4 3sdr_A Alpha-bisabolene syntha 100.0 2.1E-85 7.3E-90 668.1 27.1 299 1-304 516-817 (817)
5 3s9v_A Abietadiene synthase, c 100.0 5.5E-85 1.9E-89 662.7 27.7 297 1-303 488-785 (785)
6 2ong_A 4S-limonene synthase; m 100.0 9.2E-85 3.1E-89 641.9 26.8 298 1-303 245-543 (543)
7 3p5p_A Taxadiene synthase; cla 100.0 1.9E-84 6.4E-89 657.2 28.0 297 1-304 459-756 (764)
8 1n1b_A (+)-bornyl diphosphate 100.0 1.1E-84 3.8E-89 641.1 25.1 298 1-303 251-549 (549)
9 2j5c_A 1,8-cineole synthase; t 100.0 3E-84 1E-88 639.9 23.1 297 1-303 272-569 (569)
10 1ps1_A Pentalenene synthase; a 100.0 6.2E-53 2.1E-57 393.9 16.4 239 1-253 29-271 (337)
11 1di1_A Aristolochene synthase; 100.0 1.2E-50 4.2E-55 372.3 16.3 231 1-252 25-264 (300)
12 3pya_A ENT-copalyl diphosphate 100.0 1.2E-49 4.1E-54 399.4 14.1 242 1-303 463-720 (727)
13 3bny_A Aristolochene synthase; 100.0 6.1E-49 2.1E-53 364.4 16.2 231 1-252 39-278 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 1.5E-47 5.2E-52 363.7 16.0 240 1-252 69-312 (382)
15 3v1v_A 2-MIB synthase, 2-methy 100.0 1.9E-33 6.5E-38 269.7 15.0 227 14-252 150-390 (433)
16 1yyq_A Trichodiene synthase; t 99.7 9.3E-17 3.2E-21 151.1 15.6 228 16-271 64-293 (374)
17 3ipi_A Geranyltranstransferase 94.5 2.1 7.2E-05 38.3 16.6 144 112-273 128-279 (295)
18 3lmd_A Geranylgeranyl pyrophos 93.0 0.96 3.3E-05 41.8 11.7 87 111-202 160-246 (360)
19 3rmg_A Octaprenyl-diphosphate 90.3 4.4 0.00015 36.8 13.0 88 111-202 133-220 (334)
20 3mzv_A Decaprenyl diphosphate 89.0 13 0.00044 33.8 15.1 88 111-202 139-226 (341)
21 3oyr_A Trans-isoprenyl diphosp 86.3 15 0.00051 33.5 13.7 88 111-203 151-239 (345)
22 3m0g_A Farnesyl diphosphate sy 84.9 5 0.00017 35.8 9.6 111 121-250 147-269 (297)
23 3lsn_A Geranyltranstransferase 84.2 8.1 0.00028 34.6 10.7 134 123-283 154-299 (304)
24 3ts7_A Geranyltranstransferase 82.6 14 0.00047 33.4 11.6 112 122-250 159-282 (324)
25 4dhd_A Polyprenyl synthetase; 80.2 14 0.00047 33.8 10.9 107 112-221 133-261 (358)
26 1wy0_A Geranylgeranyl pyrophos 80.1 17 0.00057 32.9 11.4 104 113-221 139-253 (342)
27 1rtr_A Geranyltranstransferase 80.0 6.7 0.00023 35.1 8.5 113 121-250 148-271 (301)
28 2ftz_A Geranyltranstransferase 79.7 23 0.0008 31.2 11.9 126 112-250 135-264 (284)
29 3apz_A Geranyl diphosphate syn 79.0 24 0.00083 31.9 12.2 89 111-203 153-241 (348)
30 3pko_A Geranylgeranyl pyrophos 79.0 34 0.0012 30.8 13.0 102 112-220 144-258 (334)
31 4hd1_A Squalene synthase HPNC; 78.9 34 0.0012 30.1 18.4 201 21-265 28-241 (294)
32 3p8l_A Geranyltranstransferase 77.8 16 0.00055 32.6 10.3 111 122-250 157-279 (302)
33 2h8o_A Geranyltranstransferase 76.7 16 0.00056 33.0 10.1 112 121-250 192-315 (335)
34 3p8r_A Geranyltranstransferase 76.4 10 0.00035 33.8 8.6 112 122-250 159-282 (302)
35 3lom_A Geranyltranstransferase 75.6 26 0.00088 31.4 11.1 114 122-250 159-283 (313)
36 4f62_A Geranyltranstransferase 74.5 21 0.00071 32.1 10.1 111 123-250 153-275 (317)
37 3nf2_A Putative polyprenyl syn 72.6 56 0.0019 29.6 13.9 85 113-202 145-230 (352)
38 3pde_A Farnesyl-diphosphate sy 69.3 30 0.001 30.9 9.9 110 122-250 156-278 (309)
39 3acx_A Dehydrosqualene synthas 68.0 62 0.0021 28.3 19.3 204 21-263 27-244 (293)
40 3npk_A Geranyltranstransferase 68.0 58 0.002 28.7 11.4 113 120-250 144-266 (291)
41 3uca_A Geranyltranstransferase 67.4 32 0.0011 30.9 9.8 112 122-250 181-304 (324)
42 1wmw_A Geranylgeranyl diphosph 65.6 75 0.0026 28.4 13.7 102 112-221 131-246 (330)
43 3llw_A Geranyltranstransferase 63.6 20 0.00069 32.1 7.6 114 121-250 159-281 (311)
44 1rqj_A Geranyltranstransferase 60.6 53 0.0018 29.0 9.8 111 122-250 153-276 (299)
45 3aqb_B Component B of hexapren 57.8 1E+02 0.0035 27.4 13.9 87 112-202 131-217 (325)
46 2q80_A Geranylgeranyl pyrophos 53.5 75 0.0026 28.0 9.5 84 111-202 111-195 (301)
47 1uby_A FPS, farnesyl diphospha 53.1 75 0.0026 28.9 9.7 105 112-221 170-291 (367)
48 2qis_A Farnesyl pyrophosphate 50.6 1.2E+02 0.004 27.7 10.6 105 112-221 177-298 (374)
49 2j1p_A Geranylgeranyl pyrophos 46.5 27 0.00092 30.9 5.4 108 123-250 162-272 (293)
50 2e8v_A Geranylgeranyl pyrophos 46.0 62 0.0021 29.1 7.8 86 112-203 132-221 (340)
51 3tc1_A Octaprenyl pyrophosphat 45.4 1.6E+02 0.0056 26.0 13.0 100 112-221 123-235 (315)
52 3mav_A Farnesyl pyrophosphate 42.6 2E+02 0.0067 26.3 10.9 61 139-202 229-292 (395)
53 2azj_A Geranylgeranyl pyrophos 38.8 97 0.0033 27.2 7.8 116 113-250 137-258 (289)
54 3kra_B Geranyl diphosphate syn 38.4 50 0.0017 28.8 5.8 69 123-198 151-221 (274)
55 3fau_A NEDD4-binding protein 2 31.4 41 0.0014 23.4 3.3 22 225-248 7-28 (82)
56 1yhl_A Farnesyl pyrophosphate 31.2 1E+02 0.0035 27.8 6.9 105 112-221 152-284 (362)
57 1v4e_A Octoprenyl-diphosphate 29.5 98 0.0034 27.2 6.3 84 111-204 127-212 (299)
58 1d0q_A DNA primase; zinc-bindi 27.3 53 0.0018 24.0 3.4 29 207-240 64-92 (103)
59 3lk5_A Geranylgeranyl pyrophos 26.4 3.7E+02 0.013 24.4 13.6 77 121-202 185-263 (380)
60 2her_A Fragment, farnesyl pyro 24.8 3.9E+02 0.013 24.2 11.3 104 112-221 169-284 (368)
61 2q58_A Fragment, farnesyl pyro 23.9 58 0.002 29.7 3.7 86 114-202 171-260 (368)
62 2zqe_A MUTS2 protein; alpha/be 22.1 77 0.0026 22.2 3.3 21 225-247 11-31 (83)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=1.9e-91 Score=685.38 Aligned_cols=299 Identities=53% Similarity=0.958 Sum_probs=283.5
Q ss_pred CCccCCCCCCCChhhhhHHHHHHhhhhcccCCCchHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHhhhhccccccc
Q 048111 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYATPKELDLFTAAIDRWDMSCMD 80 (304)
Q Consensus 1 Ww~~~~l~~~l~~~R~r~~e~yf~~~~~~feP~~s~~R~~~ak~~~l~~~iDD~~D~~~t~eel~~~t~ai~rWd~~~~~ 80 (304)
|||++||+++|||+|||++|||||++|++|||+||.+|+++||+++|++++||+||.|||+||++.||+||+|||.++++
T Consensus 256 Wwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~ 335 (554)
T 3g4d_A 256 WWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCID 335 (554)
T ss_dssp HHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGG
T ss_pred HHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCccccc
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHhcCCcceehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHH
Q 048111 81 QLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTA 160 (304)
Q Consensus 81 ~lp~~~k~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~ 160 (304)
+||+|||+||.+++++++|++.++.++||+++++|++++|++++++|++||+|+++||+||+||||+||.+|+|++++++
T Consensus 336 ~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~ 415 (554)
T 3g4d_A 336 EIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAI 415 (554)
T ss_dssp GSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHH
Confidence 99999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHhhccchhHHHHHHHHHHHHhcCccchhhhhhcCCCchhHHHHHhhcccCCcccCHHHHHHHHHHH
Q 048111 161 ASFLGMDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKK 240 (304)
Q Consensus 161 ~~~~~~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi~s~~~E~~~G~~~n~V~~ym~e~~~~g~~~s~eeA~~~i~~~ 240 (304)
+++++||+.+|+++++|++++|+++++++.++||+|||+||++|+++|+++|+|+|||+|| | +|+|+|+++++++
T Consensus 416 ~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~---G--vSeEeA~~~i~~~ 490 (554)
T 3g4d_A 416 TSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEY---G--VTAQEAYDVFNKH 490 (554)
T ss_dssp HHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHH---T--CCHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhc---C--CCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 9 9999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhhhhcccCCCCCCCChhHHHHHHhhhccccCC
Q 048111 241 VGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLIHPVAI 304 (304)
Q Consensus 241 i~~~~k~ln~~~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~D~~~~~~~~~~~~i~~ll~~pi~~ 304 (304)
|+++||+||++|++++++|++|+++++|++|+++++|+++||||.|+..||++|++||++||++
T Consensus 491 Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 491 VESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554 (554)
T ss_dssp HHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence 9999999999999988999999999999999999999999999999778999999999999985
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=2.1e-90 Score=677.50 Aligned_cols=298 Identities=46% Similarity=0.863 Sum_probs=287.3
Q ss_pred CCccCCCCCCCChhhhhHHHHHHhhhhcccCCCchHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHhhhhccccccc
Q 048111 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYATPKELDLFTAAIDRWDMSCMD 80 (304)
Q Consensus 1 Ww~~~~l~~~l~~~R~r~~e~yf~~~~~~feP~~s~~R~~~ak~~~l~~~iDD~~D~~~t~eel~~~t~ai~rWd~~~~~ 80 (304)
|||++||+++|||||||++|||||++|++|||+||.+|+++||++++++++||+||.|||+||++.||+||+|||.++++
T Consensus 252 Wwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~ 331 (550)
T 3m00_A 252 WWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEID 331 (550)
T ss_dssp HHHTTTHHHHSTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCGGGGG
T ss_pred HHHHcCCccccCcHHHhHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhcCccccc
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHhcCCcceehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHH
Q 048111 81 QLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTA 160 (304)
Q Consensus 81 ~lp~~~k~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~ 160 (304)
+||+|||+||.+|+++++|++.++.++||+++++|++++|++++++|++||+|+++||+||+||||+||.+|+|++++++
T Consensus 332 ~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~ 411 (550)
T 3m00_A 332 RLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLAT 411 (550)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHH
Confidence 99999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHhhccchhHHHHHHHHHHHHhcCccchhhhhhcCCCchhHHHHHhhcccCCcccCHHHHHHHHHHH
Q 048111 161 ASFLGMDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKK 240 (304)
Q Consensus 161 ~~~~~~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi~s~~~E~~~G~~~n~V~~ym~e~~~~g~~~s~eeA~~~i~~~ 240 (304)
++++++ +.+|+++++|+.++|+++++++.++||+|||+||++|+++|+++|+|+|||+|| | +|+|+|+++++++
T Consensus 412 ~~f~g~-~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~vas~V~cYMke~---G--vSeEeA~~~i~~~ 485 (550)
T 3m00_A 412 TSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDY---G--ISTKEAMAKFQNM 485 (550)
T ss_dssp HHHHTC-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHHHHTTCTTSHHHHHHHHH---T--CCHHHHHHHHHHH
T ss_pred HHHHcC-CCCcHHHHHhhcccHHHHHHHhhhheeeccchhHHHHHhcCCcccHHHHHHHhc---C--CCHHHHHHHHHHH
Confidence 988776 679999999999999999999999999999999999999999999999999999 9 9999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhhhhcccC-CCCCCCChhHHHHHHhhhccccCC
Q 048111 241 VGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEA-DDYTHVGQVMKDNIASVLIHPVAI 304 (304)
Q Consensus 241 i~~~~k~ln~~~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~-D~~~~~~~~~~~~i~~ll~~pi~~ 304 (304)
|+++||+||+++++++++|++|+++++|++|+++++|+++ ||||.|+..||++|++||++||++
T Consensus 486 Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 486 AETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550 (550)
T ss_dssp HHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTSCC-----CCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHhhCCCCC
Confidence 9999999999999988999999999999999999999998 999999668999999999999986
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=2.1e-90 Score=678.88 Aligned_cols=298 Identities=32% Similarity=0.616 Sum_probs=289.6
Q ss_pred CCccCCCCCCCChhhhhHHHHHHhhhhcccCCCchHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHhhhhccccccc
Q 048111 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYATPKELDLFTAAIDRWDMSCMD 80 (304)
Q Consensus 1 Ww~~~~l~~~l~~~R~r~~e~yf~~~~~~feP~~s~~R~~~ak~~~l~~~iDD~~D~~~t~eel~~~t~ai~rWd~~~~~ 80 (304)
|||++||+++|||||||++|||||++|++|||+||.+|++|||+++|++++||+||.|||+||++.||+||+|||.++++
T Consensus 254 Wwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygt~eEl~~ft~ai~RWD~~~~~ 333 (555)
T 3n0f_A 254 WWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAIN 333 (555)
T ss_dssp HHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCGGGGG
T ss_pred HHHHcCCcccCCchhhHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHhcCccccc
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHhcCCcceehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHH
Q 048111 81 QLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTA 160 (304)
Q Consensus 81 ~lp~~~k~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~ 160 (304)
+||+|||+||.+|+++++|++.++.+++|+++++|++++|+++++||++||+|+.+||+||+||||+||.+|+|++++++
T Consensus 334 ~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~ 413 (555)
T 3n0f_A 334 DLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLI 413 (555)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHH
Confidence 99999999999999999999999888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHhhccchhHHHHHHHHHHHHhcCccchhhhhhcCCCchhHHHHHhhcccCCcccCHHHHHHHHHHH
Q 048111 161 ASFLGMDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKK 240 (304)
Q Consensus 161 ~~~~~~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi~s~~~E~~~G~~~n~V~~ym~e~~~~g~~~s~eeA~~~i~~~ 240 (304)
+++++||+.+|+++++|+.++|++++++++++||+|||+||++|+++|+++|+|+|||+|+ | +|+|+|+++++++
T Consensus 414 ~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~vas~V~cYMke~---G--vSeEeA~~~i~~~ 488 (555)
T 3n0f_A 414 FAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTK---G--ISEELATESVMNL 488 (555)
T ss_dssp HHHHHHCSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHH---T--CCHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHhcccchHHHHHHHHHHHHhccchhhhhhhhcCCcchHHHHHHHHc---C--CCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 9 9999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhhhhcccCCCCCCCChhHHHHHHhhhccccC
Q 048111 241 VGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLIHPVA 303 (304)
Q Consensus 241 i~~~~k~ln~~~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~D~~~~~~~~~~~~i~~ll~~pi~ 303 (304)
|+++||+||++|++++++|++|+++++|++|+++++|+++||||.|+..||++|++||++||+
T Consensus 489 Ie~~wK~lN~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 489 IDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITEPIL 551 (555)
T ss_dssp HHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHSCCC---CCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHhcCCC
Confidence 999999999999998899999999999999999999999999999866899999999999986
No 4
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=2.1e-85 Score=668.05 Aligned_cols=299 Identities=31% Similarity=0.597 Sum_probs=284.0
Q ss_pred CCccCCCCCCCChhhhhHHHHHHhhhhcccCCCchHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHhhhhccccccc
Q 048111 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYATPKELDLFTAAIDRWDMSCMD 80 (304)
Q Consensus 1 Ww~~~~l~~~l~~~R~r~~e~yf~~~~~~feP~~s~~R~~~ak~~~l~~~iDD~~D~~~t~eel~~~t~ai~rWd~~~~~ 80 (304)
|||++|| .+|||+|||++|||||++|++|||+||.+|++|||+++|++++||+||.|||+||++.||+||+|||.++++
T Consensus 516 Wwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~ 594 (817)
T 3sdr_A 516 WFRDSGL-PLFTFARERPLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTE 594 (817)
T ss_dssp HHHHSSG-GGCTTSCCCHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCGGGGG
T ss_pred eHHhcCC-CcCccHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhh
Confidence 9999999 699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHhcCCcceehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhH-HH
Q 048111 81 QLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSM-LT 159 (304)
Q Consensus 81 ~lp~~~k~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~-~~ 159 (304)
+||+|||+||.+|+++++|++.++.+++|+++++|++++|++++++|++||+|+++||+||+||||+||.+|+|+++ ++
T Consensus 595 ~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~ 674 (817)
T 3sdr_A 595 NLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLL 674 (817)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHH
Confidence 99999999999999999999999888878899999999999999999999999999999999999999999999999 88
Q ss_pred HHHHHhCCCCCCHHHHhhcc--chhHHHHHHHHHHHHhcCccchhhhhhcCCCchhHHHHHhhcccCCcccCHHHHHHHH
Q 048111 160 AASFLGMDSVVTKEAFDWVS--EKPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEEL 237 (304)
Q Consensus 160 ~~~~~~~g~~~~~e~~~~~~--~~~~l~~~~~~i~rL~NDi~s~~~E~~~G~~~n~V~~ym~e~~~~g~~~s~eeA~~~i 237 (304)
+++++++|+.+|+++++|+. +.|+++++++.|+||+|||+||++|+++|+++|+|+|||+||+ | +|+|+|++++
T Consensus 675 ~~~~~~~g~~lt~e~~e~~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~--g--vS~EeA~~~i 750 (817)
T 3sdr_A 675 SGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHP--E--CTEEEALDHI 750 (817)
T ss_dssp HHHTTCTTCCCCHHHHHTTCCTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHST--T--SCHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHhcccccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCC--C--CCHHHHHHHH
Confidence 88899999999999999965 4569999999999999999999999999999999999999996 7 9999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhhhhcccCCCCCCCChhHHHHHHhhhccccCC
Q 048111 238 YKKVGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLIHPVAI 304 (304)
Q Consensus 238 ~~~i~~~~k~ln~~~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~D~~~~~~~~~~~~i~~ll~~pi~~ 304 (304)
+++|+++||+||++|++++++|++|+++++|++|+++++|+++||||.|+..||++|++||++||++
T Consensus 751 ~~~Ie~~wKeln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 751 YSILEPAVKELTREFLKPDDVPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHTCSCCSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCC
Confidence 9999999999999999988899999999999999999999999999998668999999999999985
No 5
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=5.5e-85 Score=662.73 Aligned_cols=297 Identities=30% Similarity=0.580 Sum_probs=284.1
Q ss_pred CCccCCCCCCCChhhhhHHHHHHhhhhcccCCCchHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHhhhhccccccc
Q 048111 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYATPKELDLFTAAIDRWDMSCMD 80 (304)
Q Consensus 1 Ww~~~~l~~~l~~~R~r~~e~yf~~~~~~feP~~s~~R~~~ak~~~l~~~iDD~~D~~~t~eel~~~t~ai~rWd~~~~~ 80 (304)
|||++|| .+|||+|||++|||||++|++|||+||.+|++|||+++|++++||+||.|||+||++.||+||+|||.++++
T Consensus 488 Wwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~ 566 (785)
T 3s9v_A 488 WWKSSGF-TDLNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVD 566 (785)
T ss_dssp HHHHTTT-TSCSSSCCCHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSSSGG
T ss_pred HHHHcCC-CcCccHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCchhhh
Confidence 9999999 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHhcCCcceehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHH
Q 048111 81 QLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTA 160 (304)
Q Consensus 81 ~lp~~~k~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~ 160 (304)
+||+|||+||.+|+++++|++.++.+.+|.++++|++++|++++++|++||+|+++||+||+||||+||.+|+|++++++
T Consensus 567 ~Lpeymk~~f~aL~~~~nei~~~~~~~~g~~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~ 646 (785)
T 3s9v_A 567 QMPQQMKICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVL 646 (785)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHH
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHH
Confidence 99999999999999999999999888556689999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHhhccchhHHHHHHHHHHHHhcCccchhhhhhcCCCchhHHHHHhhcccCCcccCHHHHHHHHHHH
Q 048111 161 ASFLGMDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKK 240 (304)
Q Consensus 161 ~~~~~~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi~s~~~E~~~G~~~n~V~~ym~e~~~~g~~~s~eeA~~~i~~~ 240 (304)
+++++||+.+|+++++|+..+|+++++++.|+||+|||+||++|+++|+++|+|+|||+||| | +|+|+|+++++++
T Consensus 647 ~~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~--g--vSeEeA~~~i~~~ 722 (785)
T 3s9v_A 647 ISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHP--K--ISEEEALQHVYSV 722 (785)
T ss_dssp HHTTCSSSCCCHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCT--T--SCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHhcccccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCC--C--CCHHHHHHHHHHH
Confidence 99999999999999999666699999999999999999999999999999999999999997 7 9999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhhhhcccCCCCCCCCh-hHHHHHHhhhccccC
Q 048111 241 VGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQ-VMKDNIASVLIHPVA 303 (304)
Q Consensus 241 i~~~~k~ln~~~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~D~~~~~~~-~~~~~i~~ll~~pi~ 303 (304)
|+++||+||++|++++ +|++|+++++|++|+++++|+++||||.|+. .||++|++||++||.
T Consensus 723 Ie~~wKeln~e~l~~~-~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 723 MENALEELNREFVNNK-IPDIYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHTCCCC----CHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHhcccCC
Confidence 9999999999999977 9999999999999999999999999999964 699999999999984
No 6
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=9.2e-85 Score=641.90 Aligned_cols=298 Identities=28% Similarity=0.556 Sum_probs=292.2
Q ss_pred CCccCCCCCCCChhhhhHHHHHHhhhhcccCCCchHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHhhhhccccccc
Q 048111 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYATPKELDLFTAAIDRWDMSCMD 80 (304)
Q Consensus 1 Ww~~~~l~~~l~~~R~r~~e~yf~~~~~~feP~~s~~R~~~ak~~~l~~~iDD~~D~~~t~eel~~~t~ai~rWd~~~~~ 80 (304)
|||++||.+++||+|||++|||||++|++|||++|.+|+++||+++|++++||+||.|||++|++.||+||+|||.++++
T Consensus 245 Wwk~~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~litviDD~fD~~gt~eEl~~ft~ai~rWD~~~~~ 324 (543)
T 2ong_A 245 WWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDINSID 324 (543)
T ss_dssp HHHHHTHHHHSCSSCCCHHHHHHTHHHHTCSTTCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTTCSSTTT
T ss_pred HHHHcCCcccccHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccc
Confidence 99999998789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHhcCCcceehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHH
Q 048111 81 QLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTA 160 (304)
Q Consensus 81 ~lp~~~k~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~ 160 (304)
.+|+|||+||.+++++++|++.++.+.+|+++++|++++|++++++|++||+|+.+|++||+||||++|.+|+|++++++
T Consensus 325 ~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~ 404 (543)
T 2ong_A 325 QLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLT 404 (543)
T ss_dssp TSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHH
Confidence 99999999999999999999999988888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHhhccchhHHHHHHHHHHHHhcCccchhhhhhcCCCchhHHHHHhhcccCCcccCHHHHHHHHHHH
Q 048111 161 ASFLGMDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKK 240 (304)
Q Consensus 161 ~~~~~~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi~s~~~E~~~G~~~n~V~~ym~e~~~~g~~~s~eeA~~~i~~~ 240 (304)
+++++||..+|+++++|+.++|++++++++++||+|||+||++|+++|+++|+|+|||+|+ | +|+|+|+++++++
T Consensus 405 ~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~~~n~V~cyMke~---g--~s~eeA~~~i~~~ 479 (543)
T 2ong_A 405 HIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDY---N--ASEAEARKHVKWL 479 (543)
T ss_dssp HHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHHHHHHHT---C--CCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHhcccHHHHHHHHHHHHHhcccchhhhccccCCccHHHHHHHHHc---C--CCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 9 9999999999999
Q ss_pred HHHHHHHHHHhh-cCCCCCcHHHHHHHHHHHhhhhhhcccCCCCCCCChhHHHHHHhhhccccC
Q 048111 241 VGDAWKDINEEC-LMPTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLIHPVA 303 (304)
Q Consensus 241 i~~~~k~ln~~~-l~~~~~p~~~~~~~ln~aR~~~~~Y~~~D~~~~~~~~~~~~i~~ll~~pi~ 303 (304)
|+++||+||+++ ++++++|++|+++++|++|+++++|+++||||.|+..||++|++||++||+
T Consensus 480 ie~~wk~ln~e~~l~~~~vp~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 480 IAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp HHHHHHHHHHHHTCSSCSSCHHHHHHHHHHHHHHHHHTSSCSTTSSSCTTHHHHHHHHHTSCC-
T ss_pred HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHeehhheeCCCCCCCccHHHHHHHHHHhccCCC
Confidence 999999999999 998889999999999999999999999999999977899999999999996
No 7
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=1.9e-84 Score=657.25 Aligned_cols=297 Identities=29% Similarity=0.537 Sum_probs=280.7
Q ss_pred CCccCCCCCCCChhhhhHHHHHHhhhhcccCCCchHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHhhhhccccccc
Q 048111 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYATPKELDLFTAAIDRWDMSCMD 80 (304)
Q Consensus 1 Ww~~~~l~~~l~~~R~r~~e~yf~~~~~~feP~~s~~R~~~ak~~~l~~~iDD~~D~~~t~eel~~~t~ai~rWd~~~~~ 80 (304)
|||++|| .+|||+|||++|||||++| |||+||.+|++|||+++|++++||+||.|||+||++.||+||+|||.++++
T Consensus 459 Wwk~~~l-~~l~faRdr~ve~Yfw~~~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~ 535 (764)
T 3p5p_A 459 WWKESGM-ADINFTRHRVAEVYFSSAT--FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLH 535 (764)
T ss_dssp HHHHTST-TTTTCCHHHHHHHHHHTCC--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTTGG
T ss_pred eHHhcCC-CcCccHHHHHHHHHHHHHh--CCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhh
Confidence 9999999 6999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHhcCCcceehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHH
Q 048111 81 QLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTA 160 (304)
Q Consensus 81 ~lp~~~k~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~ 160 (304)
+||+|||+||.+++++++|++.++.+.+|.++++|++++|++++++|++||+|+++||+||+||||+||.+|+|++++++
T Consensus 536 ~LPeymk~~f~aL~~~~~ei~~~~~~~~g~~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~ 615 (764)
T 3p5p_A 536 EIPECMQTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTL 615 (764)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHH
Confidence 99999999999999999999999887556689999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHhhccchhHHHHHHHHHHHHhcCccchhhhhhcCCCchhHHHHHhhcccCCcccCHHHHHHHHHHH
Q 048111 161 ASFLGMDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKK 240 (304)
Q Consensus 161 ~~~~~~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi~s~~~E~~~G~~~n~V~~ym~e~~~~g~~~s~eeA~~~i~~~ 240 (304)
.+++++|+.+|+++++|+..+|+++++++.|+||+|||+||++|+++|+++|+|+|||+||| | +|+|+|+++++++
T Consensus 616 ~~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~--g--vSeEeA~~~i~~~ 691 (764)
T 3p5p_A 616 QPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNP--G--ATEEDAIKHICRV 691 (764)
T ss_dssp HHHHTSSSCCCGGGHHHHSTTSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHST--T--CCHHHHHHHHHHH
T ss_pred HHHHHcCCCCcHHHHhhhhhhHHHHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcC--C--CCHHHHHHHHHHH
Confidence 99999999999999999766699999999999999999999999999999999999999996 7 9999999999999
Q ss_pred HHHHHHHHHHhhcC-CCCCcHHHHHHHHHHHhhhhhhcccCCCCCCCChhHHHHHHhhhccccCC
Q 048111 241 VGDAWKDINEECLM-PTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLIHPVAI 304 (304)
Q Consensus 241 i~~~~k~ln~~~l~-~~~~p~~~~~~~ln~aR~~~~~Y~~~D~~~~~~~~~~~~i~~ll~~pi~~ 304 (304)
|+++||+||++|++ ++.+|++|+++++|++|+++++|+++||||.|+..||++|++||++||++
T Consensus 692 Ie~~wKeln~e~l~~~~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 756 (764)
T 3p5p_A 692 VDRALKEASFEYFKPSNDIPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756 (764)
T ss_dssp HHHHHHHHHHHHHSCCSSSCHHHHHHHHHTHHHHHHHSCC-------CCCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhcCCcc
Confidence 99999999999998 77899999999999999999999999999998667999999999999974
No 8
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=1.1e-84 Score=641.14 Aligned_cols=298 Identities=32% Similarity=0.623 Sum_probs=280.0
Q ss_pred CCccCCCCCCCChhhhhHHHHHHhhhhcccCCCchHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHhhhhccccccc
Q 048111 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYATPKELDLFTAAIDRWDMSCMD 80 (304)
Q Consensus 1 Ww~~~~l~~~l~~~R~r~~e~yf~~~~~~feP~~s~~R~~~ak~~~l~~~iDD~~D~~~t~eel~~~t~ai~rWd~~~~~ 80 (304)
|||++||.++|||+|||++|||||++|++|||++|.+|+++||+++|++++||+||.|||++|++.||+||+|||.++++
T Consensus 251 Wwke~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~l~tviDD~yD~~gt~eEl~~ft~ai~rWD~~~~~ 330 (549)
T 1n1b_A 251 WWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESIT 330 (549)
T ss_dssp HHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCSSGGG
T ss_pred HHHHhCCcccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccc
Confidence 99999998779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHhcCCcceehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHH
Q 048111 81 QLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTA 160 (304)
Q Consensus 81 ~lp~~~k~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~ 160 (304)
.+|+|||+||.+++++++|++.++.+.+|+++++|++++|++++++|++||+|+.+||+||+||||++|.+|+|++++++
T Consensus 331 ~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~ 410 (549)
T 1n1b_A 331 RLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIIS 410 (549)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHH
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHH
Confidence 99999999999999999999999988888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHH-HhhccchhHHHHHHHHHHHHhcCccchhhhhhcCCCchhHHHHHhhcccCCcccCHHHHHHHHHH
Q 048111 161 ASFLGMDSVVTKEA-FDWVSEKPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYK 239 (304)
Q Consensus 161 ~~~~~~g~~~~~e~-~~~~~~~~~l~~~~~~i~rL~NDi~s~~~E~~~G~~~n~V~~ym~e~~~~g~~~s~eeA~~~i~~ 239 (304)
+++++||..+|+++ ++|+.++|+++++++.++||+|||+||++|+++|+++|+|+|||+|| | +|+|+|++++++
T Consensus 411 ~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~v~n~V~cyMke~---g--~s~eeA~~~i~~ 485 (549)
T 1n1b_A 411 PTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKET---N--ASEEEAVEHVKF 485 (549)
T ss_dssp HHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHH---C--CCHHHHHHHHHH
T ss_pred HHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHHc---C--CCHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999999999999999999999999999 9 999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhhhhcccCCCCCCCChhHHHHHHhhhccccC
Q 048111 240 KVGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLIHPVA 303 (304)
Q Consensus 240 ~i~~~~k~ln~~~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~D~~~~~~~~~~~~i~~ll~~pi~ 303 (304)
+|+++||+||+++++++++|++|+++++|++|+++++|+++||||.|+..||++|++||++||+
T Consensus 486 ~i~~~wk~ln~e~l~~~~vp~~~~~~~~n~~R~~~~~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 486 LIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp HHHHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHHTTTSCCC----CHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHeeehheeCCCCCCCCcHHHHHHHHHHhcCCCC
Confidence 9999999999999998889999999999999999999999999999976899999999999996
No 9
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=3e-84 Score=639.90 Aligned_cols=297 Identities=31% Similarity=0.569 Sum_probs=273.2
Q ss_pred CCccCCCCCCCChhhhhHHHHHHhhhhcccCCCchHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHhhhhccccccc
Q 048111 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYATPKELDLFTAAIDRWDMSCMD 80 (304)
Q Consensus 1 Ww~~~~l~~~l~~~R~r~~e~yf~~~~~~feP~~s~~R~~~ak~~~l~~~iDD~~D~~~t~eel~~~t~ai~rWd~~~~~ 80 (304)
|||++||.+++||+|||++|||||++|++|||++|.+|+++||+++|++++||+||.|||++|++.||+||+|||.++++
T Consensus 272 Wwke~~L~~kl~faRdR~ve~Yfw~~a~~feP~~S~~Rl~~aK~~~litviDD~fD~ygT~eEl~~ft~ai~rWD~~~~~ 351 (569)
T 2j5c_A 272 WWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMK 351 (569)
T ss_dssp HHHHHTHHHHCC--CCCHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSSGGGG
T ss_pred HHHHcCCccccchHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCccccc
Confidence 99999998789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHhcCCcceehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHH
Q 048111 81 QLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTA 160 (304)
Q Consensus 81 ~lp~~~k~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~ 160 (304)
.+|+|||+||.+++++++|++.++.+.+|+++++|++++|++++++|++||+|+.+|++||+||||++|.+|+|++++++
T Consensus 352 ~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~ 431 (569)
T 2j5c_A 352 QLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILS 431 (569)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHH
Confidence 99999999999999999999999988888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHhhccchhHHHHHHHHHHHHhcCccchhhhhhcCCCchhHHHHHhhcccCCcccCHHHHHHHHHHH
Q 048111 161 ASFLGMDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKK 240 (304)
Q Consensus 161 ~~~~~~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi~s~~~E~~~G~~~n~V~~ym~e~~~~g~~~s~eeA~~~i~~~ 240 (304)
+++++||..+|+++++|+.++|++++++++++||+|||+||++|+++|+++|+|+|||+|+ | +|+|+|+++++++
T Consensus 432 ~~~~~~g~~lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~s~V~cyMke~---g--~s~eeA~~~i~~~ 506 (569)
T 2j5c_A 432 HLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEK---N--ASEEEAREHVRSL 506 (569)
T ss_dssp HHHHHSCSSCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC----------CCHHHHC-----------CCHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHhhccHHHHHHHHHHHHHhcccchhhhhcccCCccHHHHHHHHHc---C--CCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 9 9999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhhhhcccC-CCCCCCChhHHHHHHhhhccccC
Q 048111 241 VGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEA-DDYTHVGQVMKDNIASVLIHPVA 303 (304)
Q Consensus 241 i~~~~k~ln~~~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~-D~~~~~~~~~~~~i~~ll~~pi~ 303 (304)
|+++||+||++|++ +++|++|+++++|++|+++++|+++ ||||.|+..||++|++||++||+
T Consensus 507 ie~~wk~ln~e~l~-~~vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 507 IDQTWKMMNKEMMT-SSFSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp HHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHTGGGSCTTC-CCCHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHheeehhccCCCcCCCCchHHHHHHHHHHhccCCC
Confidence 99999999999999 8899999999999999999999999 99999977899999999999996
No 10
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=6.2e-53 Score=393.85 Aligned_cols=239 Identities=16% Similarity=0.159 Sum_probs=219.5
Q ss_pred CCccCCCCCCCChhhhhHHHHHHhhhhcccCCCchHHHH-HHHHHHHHHHhhhhhhccC--CCHHHHHHHHHhhhhcccc
Q 048111 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARK-LLAKIFSMTSIIDYIYDVY--ATPKELDLFTAAIDRWDMS 77 (304)
Q Consensus 1 Ww~~~~l~~~l~~~R~r~~e~yf~~~~~~feP~~s~~R~-~~ak~~~l~~~iDD~~D~~--~t~eel~~~t~ai~rWd~~ 77 (304)
||+++|+. +.||+|+|++++|||.++++++|+++.+|+ ++||++.|+|++||+||.+ ||++|++.|++++.+|+.+
T Consensus 29 W~~~~~l~-~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~ee~~~~~~~l~~~~~~ 107 (337)
T 1ps1_A 29 WPRSLGLI-RSDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPEDTKQLTDQVAAALDG 107 (337)
T ss_dssp HHHHTTSC-CSHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHHHHHHHHHHHHGGGTS
T ss_pred HHHHcCCC-CCHHHHHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCHHHHHHHHHHHHHHcCC
Confidence 99999995 469999999999999999999999999999 8999999999999999998 6999999999999999864
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHhcCCcceehhhHHHHHHHHHHHHHHHhHhhCCCCC-ChHHHHhhhhhhhchh
Q 048111 78 CMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVP-TMEEYMRVSLVTSAYS 156 (304)
Q Consensus 78 ~~~~lp~~~k~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~P-s~eEYl~~~~~s~g~~ 156 (304)
.+|+++++++.++.+++++++..+ +....+++++.|+.|+.++++||+|+.+|++| |++||+++|++|+|+.
T Consensus 108 ---~~p~~~~~~~~~l~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~ 180 (337)
T 1ps1_A 108 ---PLPDTAPPIAHGFADIWRRTCEGM----TPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQ 180 (337)
T ss_dssp ---CCCTTSCHHHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHH
T ss_pred ---CCCCCCChHHHHHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchh
Confidence 478999999999999999998653 34457899999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHhhccchhHHHHHHHHHHHHhcCccchhhhhhcCCCchhHHHHHhhcccCCcccCHHHHHHH
Q 048111 157 MLTAASFLGMDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEE 236 (304)
Q Consensus 157 ~~~~~~~~~~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi~s~~~E~~~G~~~n~V~~ym~e~~~~g~~~s~eeA~~~ 236 (304)
++++++++++|..+|++++++ +..+++.++++.++||+|||+||++|+++|+++|+|.|||+++ | +|+|+|+++
T Consensus 181 ~~~~~~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~~~---g--~s~eeA~~~ 254 (337)
T 1ps1_A 181 PTVDLAERAGRFEVPHRVFDS-AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRREH---G--WSKSRSVSH 254 (337)
T ss_dssp HHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHHH---C--CCHHHHHHH
T ss_pred hHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHHHc---C--CCHHHHHHH
Confidence 999999999999999999887 6677999999999999999999999999999999999999999 9 999999999
Q ss_pred HHHHHHHHHHHHHHhhc
Q 048111 237 LYKKVGDAWKDINEECL 253 (304)
Q Consensus 237 i~~~i~~~~k~ln~~~l 253 (304)
+.++++++||++|++.-
T Consensus 255 v~~~i~~~~~~~~~~~~ 271 (337)
T 1ps1_A 255 MQNEVRARLEQYLLLES 271 (337)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999873
No 11
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=1.2e-50 Score=372.26 Aligned_cols=231 Identities=14% Similarity=0.080 Sum_probs=215.1
Q ss_pred CCccCCCCCCCChhhhhHHHHHHhhhhcccCCCchHHHH-HHHHHHHHHHhhhhhhccCCCHHHHHHHHHhhhhcccccc
Q 048111 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARK-LLAKIFSMTSIIDYIYDVYATPKELDLFTAAIDRWDMSCM 79 (304)
Q Consensus 1 Ww~~~~l~~~l~~~R~r~~e~yf~~~~~~feP~~s~~R~-~~ak~~~l~~~iDD~~D~~~t~eel~~~t~ai~rWd~~~~ 79 (304)
||+++++. +.||+|+|++++|||.++++++|+++.+|+ ++||++.|+|++||+||. ++.+|++.|++++.+|+.+
T Consensus 25 W~~~~~l~-~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~~~~~~~~~~~~-- 100 (300)
T 1di1_A 25 YFLENWKF-PSFKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEAYNNRLIPISRG-- 100 (300)
T ss_dssp HHHHHSCC-SSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHT--
T ss_pred HHHHcCCC-CCHHHHHHHHhcCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHHHHHHHHHHccC--
Confidence 88999995 679999999999999999999999999999 899999999999999999 7899999999999999875
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHhcCCcceehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHH
Q 048111 80 DQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLT 159 (304)
Q Consensus 80 ~~lp~~~k~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~ 159 (304)
+.+|++++++++++++++++++..+. .+.++.|+.++++++ |++|+..|++||++|||++|++|+|+.+++
T Consensus 101 ~~lp~~~~~~~~~l~d~~~~~~~~~~--------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl~~r~~s~g~~~~~ 171 (300)
T 1di1_A 101 DVLPDRTKPEEFILYDLWESMRAHDA--------ELANEVLEPTFVFMR-AQTDRARLSIHELGHYLEYREKDVGKALLS 171 (300)
T ss_dssp SSCCCTTCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHHHHHHTCHHHHHHH
T ss_pred CCCCCCccHHHHHHHHHHHHHHhhCh--------HHHHHHHHHHHHHHH-HHhccccCCCCCHHHHHHHHhhhccHHHHH
Confidence 57899999999999999999987752 346677999999997 899999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHhhccchhHHHHHHHHHHHHhcCccchhhhhhcCC--------CchhHHHHHhhcccCCcccCHH
Q 048111 160 AASFLGMDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIKSHKFEQERGH--------PASAIECYMKEKEREGVSVTQQ 231 (304)
Q Consensus 160 ~~~~~~~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi~s~~~E~~~G~--------~~n~V~~ym~e~~~~g~~~s~e 231 (304)
+++++++|..+|+++++. .+++.++++.++||+|||+||+||+++|+ ++|+|.|||+++ | +|+|
T Consensus 172 ~~~~~~~g~~l~~e~~~~---~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m~~~---g--~s~e 243 (300)
T 1di1_A 172 ALMRFSMGLRLSADELQD---MKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLAEES---K--LGIP 243 (300)
T ss_dssp HHHHHHHTCCCCHHHHHT---THHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHHHHH---T--CCHH
T ss_pred HHHHHHcCCCCCHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHHHHc---C--CCHH
Confidence 999999999999999983 69999999999999999999999999998 779999999999 9 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 048111 232 EVHEELYKKVGDAWKDINEEC 252 (304)
Q Consensus 232 eA~~~i~~~i~~~~k~ln~~~ 252 (304)
+|++++.+++++.|+++|+..
T Consensus 244 eA~~~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 244 ATKRVLWSMTREWETVHDEIV 264 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876
No 12
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=1.2e-49 Score=399.43 Aligned_cols=242 Identities=14% Similarity=0.159 Sum_probs=198.4
Q ss_pred CCccCCCCCCCChhhhhHHHHHHhhhhcccCCCchHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHhhhhcccc---
Q 048111 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYATPKELDLFTAAIDRWDMS--- 77 (304)
Q Consensus 1 Ww~~~~l~~~l~~~R~r~~e~yf~~~~~~feP~~s~~R~~~ak~~~l~~~iDD~~D~~~t~eel~~~t~ai~rWd~~--- 77 (304)
|||+++| .+|||+|||++|||||++|++|||+||.+|++|||.+++++++||+||.|| ||++.||+||+|||.+
T Consensus 463 Wwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yG--eEl~~ft~av~rwd~~~~~ 539 (727)
T 3pya_A 463 WYEENRL-SEWGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVKAISSSFGESS--DSRRSFSDQFHEYIANARR 539 (727)
T ss_dssp HHHHTTG-GGGTCCHHHHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHC-----
T ss_pred eHHhcCc-ccCCchhhHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHhccccccc
Confidence 9999999 679999999999999999999999999999999999999999999999999 9999999999999974
Q ss_pred ------cccc---Cchh--HHHHHHHHHHHHHHHHHHHHhcCCcceehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHH
Q 048111 78 ------CMDQ---LPEY--MQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYM 146 (304)
Q Consensus 78 ------~~~~---lp~~--~k~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl 146 (304)
+.+. +|+| ||+||.+|++++||++.++.+.+|.++++|++++|.++++++++|++ + +|
T Consensus 540 ~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k~qg~~v~~~l~~~W~~~l~s~~~Ea~-~--------~E-- 608 (727)
T 3pya_A 540 SDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSHGRDVNNLLYLSWGDWMEKWKLYGD-E--------GE-- 608 (727)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHSS-C--------CH--
T ss_pred ccccccchhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcc-c--------cc--
Confidence 3333 2777 89999999999999999988888889999999999999999999987 2 33
Q ss_pred hhhhhhhchhHHHHHHHHhCCCCCCHHHHhhccchhHHHHHHHHHHHHhcCccchhhhhhcCCCchhHHHHHhhcccCCc
Q 048111 147 RVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGV 226 (304)
Q Consensus 147 ~~~~~s~g~~~~~~~~~~~~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi~s~~~E~~~G~~~n~V~~ym~e~~~~g~ 226 (304)
|. +++.+..+.-|..+++ ++.+ +.+..+.++++.++||+||+.+|++|+.
T Consensus 609 -------Ae-llv~~I~l~sG~~l~e-~l~~-~ey~~L~~ltn~icrllndl~~~~~E~~-------------------- 658 (727)
T 3pya_A 609 -------GE-LMVKMIILMKNNDLTN-FFTH-THFVRLAEIINRICLPRQYLKARRNDEK-------------------- 658 (727)
T ss_dssp -------HH-HHHHHHHHHSSSCGGG-GGSS-HHHHHHHHHHHHHSCCCC------CHHH--------------------
T ss_pred -------ee-eeeeeeecCCCcchHh-hccC-hhHHHHHHHHHHHhHHHhHHHHHHHHHH--------------------
Confidence 11 3333333333888888 7776 7777899999999999999999999871
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCcHHHHHHHHHHHhhhhhhcccCCCCCCCChhHHHHHHhhhccccC
Q 048111 227 SVTQQEVHEELYKKVGDAWKDINEECLMP--TEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLIHPVA 303 (304)
Q Consensus 227 ~~s~eeA~~~i~~~i~~~~k~ln~~~l~~--~~~p~~~~~~~ln~aR~~~~~Y~~~D~~~~~~~~~~~~i~~ll~~pi~ 303 (304)
+++.+.|+..|++|++.||++ +.+|++| +|+.++|++ +|. |||+| + |+.||.+||||||-
T Consensus 659 --------~~~~~~IE~~mqEL~~lVl~~~~~~ip~~~--tf~~V~ksF--Yy~---ay~~p-~-i~~hI~kVl~~~~~ 720 (727)
T 3pya_A 659 --------EKTIKSMEKEMGKMVELALSESDTFRDVSI--TFLDVAKAF--YYF---ALCGD-H-LQTHISKVLFQKVG 720 (727)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHSCCTTTHHHHH--HHHHHHHHH--HHH---HHHTT-S-CHHHHHHHHHSCCC
T ss_pred --------HHHHHHHHHHHHHHHHHHhccCCCCCCCcc--cHHHHHHHH--Hhh---hcCCH-H-HHHHHHHHHcCccc
Confidence 023478999999999999984 4799999 666666655 455 99999 5 99999999999984
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=6.1e-49 Score=364.40 Aligned_cols=231 Identities=14% Similarity=0.092 Sum_probs=211.3
Q ss_pred CCccCCCCCCCChhhhhHHHHHHhhhhcccCCCchHHHH-HHHHHHHHHHhhhhhhccCCCHHHHHHHHHhhhhcccccc
Q 048111 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARK-LLAKIFSMTSIIDYIYDVYATPKELDLFTAAIDRWDMSCM 79 (304)
Q Consensus 1 Ww~~~~l~~~l~~~R~r~~e~yf~~~~~~feP~~s~~R~-~~ak~~~l~~~iDD~~D~~~t~eel~~~t~ai~rWd~~~~ 79 (304)
||+++++..+ ||+|+|++++|||.++++++|+++.+|+ ++||++.|+|++||+||. ++.+|++.|++++.+|+.+
T Consensus 39 W~~~~~l~~~-~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~~e~~~~~~~l~~~~~~-- 114 (320)
T 3bny_A 39 YFLQHWNFPN-EKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSFEEGSAYNEKLIPISRG-- 114 (320)
T ss_dssp HHHHHSCCSS-HHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHT--
T ss_pred HHHHcCCCCC-hHHHHHHHhcCchhhHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CChhhHHHHHHHHHHHhcC--
Confidence 8899999655 9999999999999999999999999999 889999999999999999 7899999999999999865
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHhcCCcceehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHH
Q 048111 80 DQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLT 159 (304)
Q Consensus 80 ~~lp~~~k~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~ 159 (304)
+.+|+++++++.++++++++++... + .+.++.|+.++ ++++|++|+.+|++||++||+++|++|+|+.+++
T Consensus 115 ~~~p~~~~~~~~al~d~~~e~~~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~~~Ps~eeYl~~r~~s~g~~~~~ 185 (320)
T 3bny_A 115 DVLPDRSIPVEYIIYDLWESMRAHD-R-------EMADEILEPVF-LFMRAQTDRTRARPMGLGGYLEYRERDVGKELLA 185 (320)
T ss_dssp SSCCCTTSHHHHHHHHHHHHHHHHH-H-------HHHHHTHHHHH-HHHHHTSCCCCCCCCCHHHHHHHHHTCHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHHhhC-H-------HHHHHHHHHHH-HHHHHHhhhccCCCCCHHHHHHHhhhcccHHHHH
Confidence 4689999999999999999998764 2 24455576677 5999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHhhccchhHHHHHHHHHHHHhcCccchhhhhhcCC--------CchhHHHHHhhcccCCcccCHH
Q 048111 160 AASFLGMDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIKSHKFEQERGH--------PASAIECYMKEKEREGVSVTQQ 231 (304)
Q Consensus 160 ~~~~~~~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi~s~~~E~~~G~--------~~n~V~~ym~e~~~~g~~~s~e 231 (304)
+++++++|..+|+++++. .+++.++++.++||+|||.||+||+++|+ ++|+|.|||+++ | +|+|
T Consensus 186 ~~~~~~~g~~l~~e~~~~---~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N~V~~~m~~~---g--~s~e 257 (320)
T 3bny_A 186 ALMRFSMGLKLSPSELQR---VREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEA---D--VTAE 257 (320)
T ss_dssp HHHHHHHTCCCCHHHHHH---THHHHHHHHHHHHHHHHHHHHHHHCC-----------CCSHHHHHHHHH---T--CCHH
T ss_pred HHHHHHcCCCCCHHHHHH---HHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccchHHHHHHHc---C--CCHH
Confidence 999999999999999984 69999999999999999999999999998 789999999999 9 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 048111 232 EVHEELYKKVGDAWKDINEEC 252 (304)
Q Consensus 232 eA~~~i~~~i~~~~k~ln~~~ 252 (304)
+|++++.+++++.++++++..
T Consensus 258 eA~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 258 AAKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999865
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=1.5e-47 Score=363.72 Aligned_cols=240 Identities=11% Similarity=-0.000 Sum_probs=219.7
Q ss_pred CCccCCCCCCCChhhhhHHHHHHhhhhcccCCCchHHHH-HHHHHHHHHHhhhhhhcc--CC-CHHHHHHHHHhhhhccc
Q 048111 1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARK-LLAKIFSMTSIIDYIYDV--YA-TPKELDLFTAAIDRWDM 76 (304)
Q Consensus 1 Ww~~~~l~~~l~~~R~r~~e~yf~~~~~~feP~~s~~R~-~~ak~~~l~~~iDD~~D~--~~-t~eel~~~t~ai~rWd~ 76 (304)
||++.++. .-+++|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. +| ++++++.|++++.++-.
T Consensus 69 W~~~~gl~-~~~~~r~r~~~~~~~~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~~~l~ 147 (382)
T 3kb9_A 69 WLLEKRLM-PADKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHTALD 147 (382)
T ss_dssp HHHHTTSS-CHHHHHHHHHHHCHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCC-CCHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHHhc
Confidence 89999994 447999999999999999999999999999 999999999999999997 55 89999999999987622
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHHHhcCCcceehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchh
Q 048111 77 SCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYS 156 (304)
Q Consensus 77 ~~~~~lp~~~k~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~ 156 (304)
. ...+|++++++++++.+++++++..+.+ ...++++++|+++++++++||+|+.+|++||+||||++|++|+|+.
T Consensus 148 ~-~~~~p~~~~p~~~al~dl~~~~~~~~~~----~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~ 222 (382)
T 3kb9_A 148 S-PGDHLHHEDTLVAGFADSVRRLYAFLPA----TWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHW 222 (382)
T ss_dssp S-CGGGTTCSSHHHHHHHHHHHHHTTSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHH
T ss_pred C-CCCCCCCCChHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHH
Confidence 2 2235888999999999999999765332 3478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHhhccchhHHHHHHHHHHHHhcCccchhhhhhcCCCchhHHHHHhhcccCCcccCHHHHHHH
Q 048111 157 MLTAASFLGMDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEE 236 (304)
Q Consensus 157 ~~~~~~~~~~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi~s~~~E~~~G~~~n~V~~ym~e~~~~g~~~s~eeA~~~ 236 (304)
++++++++++|..+|++++++ +..+++.++++.++||+|||.||+||+++|+++|+|.|||+++ | +|+|+|+++
T Consensus 223 ~~~~l~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~---g--~s~eeA~~~ 296 (382)
T 3kb9_A 223 IWTDLLEPSSGCELPDAVRKH-PAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHH---S--LTLEEAIGE 296 (382)
T ss_dssp HHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHS---C--CCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcC---C--CCHHHHHHH
Confidence 999999999999999999998 7788899999999999999999999999999999999999999 9 999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 048111 237 LYKKVGDAWKDINEEC 252 (304)
Q Consensus 237 i~~~i~~~~k~ln~~~ 252 (304)
+.++++++||++|+..
T Consensus 297 v~~~i~~~~k~~~~~~ 312 (382)
T 3kb9_A 297 VRRRVEECITEFLAVE 312 (382)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999843
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=100.00 E-value=1.9e-33 Score=269.71 Aligned_cols=227 Identities=12% Similarity=0.098 Sum_probs=177.7
Q ss_pred hhhhHHHHHHhhhhcccCCCc-hHHHH-HHHHHHHHHHhhhhhh-ccCC-CHHH-HHHHHH---hhhhccccccccCch-
Q 048111 14 ARDRVVESYFWIVGVYFEPEY-SLARK-LLAKIFSMTSIIDYIY-DVYA-TPKE-LDLFTA---AIDRWDMSCMDQLPE- 84 (304)
Q Consensus 14 ~R~r~~e~yf~~~~~~feP~~-s~~R~-~~ak~~~l~~~iDD~~-D~~~-t~ee-l~~~t~---ai~rWd~~~~~~lp~- 84 (304)
.|+++..+-|--++++..|.. +..|+ ..+|++.|+|++||.| |..| +.+. ...+.. ++..... ..+.-|.
T Consensus 150 ~~~~~~~~~~~llaa~~yP~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~l~~a~~~~d~l~~-~~~g~p~~ 228 (433)
T 3v1v_A 150 WEGQFDGFSVGRYMVGCHPDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGRLLLAHTAIDHFHS-TAEYTPTW 228 (433)
T ss_dssp --CCSCHHHHHHHHHHHCTTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHHHHHHHTTTSCCCC-CTTTHHHH
T ss_pred HHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHHHHHHHHHHHhhhc-ccCCCCcc
Confidence 466667777777777788998 78887 6699999999999995 9754 2221 122222 2211110 0110010
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHhcCCcceehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHH
Q 048111 85 ----YMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTA 160 (304)
Q Consensus 85 ----~~k~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~ 160 (304)
.-..+..+++++++++...+.+ ...++++++|++++++|++||+|+..|++||+||||++|++| |+.+++.
T Consensus 229 ~~~~~~dp~~~al~d~~~~l~~~a~~----~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~R~~s-g~~p~~~ 303 (433)
T 3v1v_A 229 QASLAADAPRRAYDSAMGYFVRAATP----SQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAMRQFN-NFRPCPT 303 (433)
T ss_dssp HHHTTSSHHHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHS-SSTTTGG
T ss_pred ccccCCchHHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-hHHHHHH
Confidence 0125678899999999876433 348899999999999999999999999999999999999999 7777777
Q ss_pred HHHHhCCCCCCHHHHhhccchhHHHHHHHHHHHHhcCccchhhhhhcC-CCchhHHHHHhhcccCCcccCHHHHHHHHHH
Q 048111 161 ASFLGMDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIKSHKFEQERG-HPASAIECYMKEKEREGVSVTQQEVHEELYK 239 (304)
Q Consensus 161 ~~~~~~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi~s~~~E~~~G-~~~n~V~~ym~e~~~~g~~~s~eeA~~~i~~ 239 (304)
++.+++|..+|++++++ +...++.++++.++||+|||.||+||+++| +++|+|.|||+++ | +|+|+|++++.+
T Consensus 304 l~e~~~g~~lp~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~~~mke~---g--~S~eeA~~~v~~ 377 (433)
T 3v1v_A 304 ITDTVGGYELPADLHAR-PDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPVVIAERE---Q--LCERDAYLKAVE 377 (433)
T ss_dssp GHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHHHHHHHH---T--CCHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHhC-chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHHHHHHhc---C--CCHHHHHHHHHH
Confidence 77888999999999987 667789999999999999999999999995 7889999999999 9 999999999999
Q ss_pred HHHHHHHHHHHhh
Q 048111 240 KVGDAWKDINEEC 252 (304)
Q Consensus 240 ~i~~~~k~ln~~~ 252 (304)
++++.++++.+..
T Consensus 378 ~i~~~~~~F~~~~ 390 (433)
T 3v1v_A 378 VHNELQHSFEAAA 390 (433)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887654
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.72 E-value=9.3e-17 Score=151.06 Aligned_cols=228 Identities=12% Similarity=0.017 Sum_probs=160.1
Q ss_pred hhHHHHHHhhhhcccCCCchHHHH-HHHHHHHHHHhhhhhhccCCCHHHHHHHHHhhhhccccccccCchhHHHHHHHHH
Q 048111 16 DRVVESYFWIVGVYFEPEYSLARK-LLAKIFSMTSIIDYIYDVYATPKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALL 94 (304)
Q Consensus 16 ~r~~e~yf~~~~~~feP~~s~~R~-~~ak~~~l~~~iDD~~D~~~t~eel~~~t~ai~rWd~~~~~~lp~~~k~~~~~l~ 94 (304)
++.+..=.| ++.+..|..+...+ ..+++..|+|++||.+|..+ +++..|.+.+-+ .. .|+ .++..++.
T Consensus 64 ~~~~~t~~~-laar~YP~a~~e~l~liad~~~~~F~lDD~~d~~~--~~l~~~~~~ll~--G~----~~~--~Pl~~al~ 132 (374)
T 1yyq_A 64 QASLQTIVG-MVVYSWAKVSKECMADLSIHYTYTLVLDDSKDDPY--PTMVNYFDDLQA--GR----EQA--HPWWALVN 132 (374)
T ss_dssp HHHHHHHHH-HHHHHSTTSCHHHHHHHHHHHHHHHHHTTCCSCSH--HHHTTHHHHHHH--TC----CCS--SHHHHHHH
T ss_pred HHHHHHHHH-HHhhcCCCCCHHHHHHHHHHHHHHHhhcccccCcH--HHHHHHHHHHhc--CC----CCC--ChHHHHHH
Confidence 334444444 55577888888876 66999999999999998754 677777776653 11 111 14455555
Q ss_pred HHHHHHHHHHHhcCCcceehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHhCCCCCCHHH
Q 048111 95 DLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEA 174 (304)
Q Consensus 95 ~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~~~~e~ 174 (304)
+.+.++. ...++....++.++|.+|+.++..|+.. .+..|+.++|...++.++|+...+.. +..+..+.++.
T Consensus 133 dl~~rl~----~~~~p~~~~rf~~s~~~~~~a~~~Ea~n--~~~~p~~~~Y~~~rR~~sG~~E~~~~--~~~P~~~~~e~ 204 (374)
T 1yyq_A 133 EHFPNVL----RHFGPFCSLNLIRSTLDFFEGCWIEQYN--FGGFPGSHDYPQFLRRMNGLGHCVGA--SLWPKEQFNER 204 (374)
T ss_dssp HHHHHHH----TTSCHHHHHHHHHHHHHHHHHHHHHTTC--CCCCTTCTTHHHHHHHHHHCHHHHHH--TTCCTTTCCTT
T ss_pred HHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHHHhc--cCCCCCHHHHHHHHHhhccHHHHHHH--hhccccccchh
Confidence 5555554 3345567889999999999999999873 67799999999999999888654433 21222232221
Q ss_pred HhhccchhHHHHHHHHHHHHhcCccchhhhhh-cCCCchhHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHHhhc
Q 048111 175 FDWVSEKPRIIRASTIIGRLVNDIKSHKFEQE-RGHPASAIECYMKEKEREGVSVTQQEVHEELYKKVGDAWKDINEECL 253 (304)
Q Consensus 175 ~~~~~~~~~l~~~~~~i~rL~NDi~s~~~E~~-~G~~~n~V~~ym~e~~~~g~~~s~eeA~~~i~~~i~~~~k~ln~~~l 253 (304)
.. ++.+...++....++.++|||.||.||.. .|+.+|.|.+++.++ | +|.++|++++.+++..+..++... +
T Consensus 205 ~~-~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~NlV~vl~~~~---g--~S~~eAl~~v~~~~~~~~~r~~~~-L 277 (374)
T 1yyq_A 205 SL-FLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYVVSD---E--ISLHEALEKLTQDTLHSSKQMVAV-F 277 (374)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHH---T--CCHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred hc-chhHHHHHHHHHHHHHhhhhhhccchhhhccCCccchhhhehhcC---C--CCHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 11 12234556666679999999999999998 499999999999999 9 999999999999999888887653 3
Q ss_pred CCCCCcHHHHHHHHHHHh
Q 048111 254 MPTEVPRALLMRVLNLSR 271 (304)
Q Consensus 254 ~~~~~p~~~~~~~ln~aR 271 (304)
. ...| .++...-+..|
T Consensus 278 ~-~~~~-~~l~al~~~ir 293 (374)
T 1yyq_A 278 S-DKDP-QVMDTIECFMH 293 (374)
T ss_dssp S-SSCH-HHHHHHHHHHH
T ss_pred c-cCCH-HHHHHHHHHHh
Confidence 2 2233 24444444444
No 17
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=94.49 E-value=2.1 Score=38.32 Aligned_cols=144 Identities=12% Similarity=0.039 Sum_probs=81.4
Q ss_pred eehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHh--CCCCCCHHHHhhccchhHHHHHHH
Q 048111 112 RVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLG--MDSVVTKEAFDWVSEKPRIIRAST 189 (304)
Q Consensus 112 ~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~~~~e~~~~~~~~~~l~~~~~ 189 (304)
.+..+.++...++.+-..+..|... .||.++|+..-..-+|.-...+. ..+ ++ ..+++..+. ..++-+..+
T Consensus 128 ~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a~-~~ga~la-g~~~~~~~~---l~~~g~~lG 200 (295)
T 3ipi_A 128 VIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAISA-SIGAYTG-GAEEELAER---FSHFGNALG 200 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHHH-HHHHHHT-TCCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHH-HHHHHHc-CCCHHHHHH---HHHHHHHHH
Confidence 3555666677788888888887643 48999999877666665433222 221 12 245554443 356788888
Q ss_pred HHHHHhcCccchhhhh-----hcCCCchhHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcH-HHH
Q 048111 190 IIGRLVNDIKSHKFEQ-----ERGHPASAIECYMKEKEREGVSVTQQEVHEELYKKVGDAWKDINEECLMPTEVPR-ALL 263 (304)
Q Consensus 190 ~i~rL~NDi~s~~~E~-----~~G~~~n~V~~ym~e~~~~g~~~s~eeA~~~i~~~i~~~~k~ln~~~l~~~~~p~-~~~ 263 (304)
+..-+.||+..+.... ..|+. +...+|..+. +..-..|.|.+.+++.++++.+.|.. +|. +.+
T Consensus 201 laFQI~DDilD~~~~~~gkd~~~gk~-Tlp~l~al~~---~~~~~le~a~~~a~~~~~~A~~~L~~-------lp~~~~~ 269 (295)
T 3ipi_A 201 TAYQIVDDILEFLEVVEGKESKFTSE-TLPHIYMKST---SKEEALKKSIDCVKLHVAAAKETLET-------FRECPAR 269 (295)
T ss_dssp HHHHHHHHHHHHHHHHHC-------C-CHHHHHTTTS---CHHHHHHHHHHHHHHHHHHHHHHHTT-------SCCSHHH
T ss_pred HHHHHHHHHHHhcCCccCCCcccCcc-cHHHHHHHhc---CchhHHHHHHHHHHHHHHHHHHHHHh-------CCCchHH
Confidence 9999999998875433 23333 6666776544 20012566666777777777766653 443 445
Q ss_pred HHHHHHHhhh
Q 048111 264 MRVLNLSRVI 273 (304)
Q Consensus 264 ~~~ln~aR~~ 273 (304)
+...++++.+
T Consensus 270 ~~L~~l~~~~ 279 (295)
T 3ipi_A 270 DKLFQITDYI 279 (295)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 5555565543
No 18
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=92.96 E-value=0.96 Score=41.76 Aligned_cols=87 Identities=21% Similarity=0.121 Sum_probs=59.1
Q ss_pred ceehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHhCCCCCCHHHHhhccchhHHHHHHHH
Q 048111 111 YRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSEKPRIIRASTI 190 (304)
Q Consensus 111 ~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~~~~e~~~~~~~~~~l~~~~~~ 190 (304)
..+..+.+++..++.+-..+..|.... ||.++|+..-..-+|.......-.-++--..+++..+. ..++-+..++
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~---l~~~g~~lG~ 234 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDA---LKNFGAAVGM 234 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHH
Confidence 346677788889999999998887655 99999998877666655433221111101245554443 3567788888
Q ss_pred HHHHhcCccchh
Q 048111 191 IGRLVNDIKSHK 202 (304)
Q Consensus 191 i~rL~NDi~s~~ 202 (304)
..-+.||+..+.
T Consensus 235 aFQI~DDilD~~ 246 (360)
T 3lmd_A 235 IFQIVDDIIDIF 246 (360)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc
Confidence 889999988775
No 19
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=90.32 E-value=4.4 Score=36.82 Aligned_cols=88 Identities=15% Similarity=0.004 Sum_probs=58.2
Q ss_pred ceehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHhCCCCCCHHHHhhccchhHHHHHHHH
Q 048111 111 YRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSEKPRIIRASTI 190 (304)
Q Consensus 111 ~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~~~~e~~~~~~~~~~l~~~~~~ 190 (304)
..+..+.+....++.|-..+..|.. +..||.++|+..-..-+|.....+.-.-++--..+++..+. ..++.+..++
T Consensus 133 ~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~---l~~~g~~lG~ 208 (334)
T 3rmg_A 133 EIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAF---ARLLGEYIGI 208 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHH
Confidence 4466677788888888888888754 34589999998877766665433321111101245554443 3567888899
Q ss_pred HHHHhcCccchh
Q 048111 191 IGRLVNDIKSHK 202 (304)
Q Consensus 191 i~rL~NDi~s~~ 202 (304)
..-+.||+..+.
T Consensus 209 aFQi~DD~ld~~ 220 (334)
T 3rmg_A 209 CFQIKDDIFDYF 220 (334)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHhccCC
Confidence 999999998876
No 20
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=88.98 E-value=13 Score=33.77 Aligned_cols=88 Identities=15% Similarity=0.043 Sum_probs=56.8
Q ss_pred ceehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHhCCCCCCHHHHhhccchhHHHHHHHH
Q 048111 111 YRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSEKPRIIRASTI 190 (304)
Q Consensus 111 ~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~~~~e~~~~~~~~~~l~~~~~~ 190 (304)
..+..+.++...++.+-..+..|.. +..||.++|+..-..-+|.......-.-++--..+++..+. ..++-+..++
T Consensus 139 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~---l~~~g~~lG~ 214 (341)
T 3mzv_A 139 RVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQA---LFDYGDALGI 214 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHH
Confidence 4456667777888888888888764 34689999998776666655432221111101245554443 3567788888
Q ss_pred HHHHhcCccchh
Q 048111 191 IGRLVNDIKSHK 202 (304)
Q Consensus 191 i~rL~NDi~s~~ 202 (304)
..-+.||+..+.
T Consensus 215 aFQI~DD~ld~~ 226 (341)
T 3mzv_A 215 AFQIVDDLLDYG 226 (341)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHhcc
Confidence 899999988774
No 21
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=86.29 E-value=15 Score=33.48 Aligned_cols=88 Identities=10% Similarity=-0.009 Sum_probs=57.8
Q ss_pred ceehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHh-CCCCCCHHHHhhccchhHHHHHHH
Q 048111 111 YRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLG-MDSVVTKEAFDWVSEKPRIIRAST 189 (304)
Q Consensus 111 ~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~~~~e~~~~~~~~~~l~~~~~ 189 (304)
..+..+.++...++.+-..+..|.. +..||.++|+..-..-+|....... ..+ +--..+++..+. ..++-+..+
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~-~~ga~lag~~~~~~~~---l~~~g~~lG 225 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAAS-EAGAVSAGVDVAKSEA---LRDYGLNLG 225 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTTCCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHHH-HHHHHHcCCCHHHHHH---HHHHHHHHH
Confidence 4466677777888888888888753 3458999999887776665543322 222 101245554443 356788889
Q ss_pred HHHHHhcCccchhh
Q 048111 190 IIGRLVNDIKSHKF 203 (304)
Q Consensus 190 ~i~rL~NDi~s~~~ 203 (304)
+..-+.||+..+.-
T Consensus 226 ~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 226 LAFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHHTTC--
T ss_pred HHHHHHHHHHhccC
Confidence 99999999988753
No 22
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=84.93 E-value=5 Score=35.83 Aligned_cols=111 Identities=14% Similarity=0.061 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHH--HhCCCCCCHHHHhhccchhHHHHHHHHHHHHhcCc
Q 048111 121 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASF--LGMDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDI 198 (304)
Q Consensus 121 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~--~~~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi 198 (304)
..++.+-..+..|...+..||.++|+..-..-+|......... +..| .+++. ..++-+..++..-+.||+
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag--~~~~~------l~~~g~~lG~aFQI~DDi 218 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAG--ADRGP------LTAYATALGLAFQIADDI 218 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCHH------HHHHHHHHHHHHHHHTTC
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcC--CCHHH------HHHHHHHHHHHHHHHHHH
Confidence 3466777777788755678999999987655555443222111 1113 23332 246788889999999999
Q ss_pred cchhhhh-hcCCC---------chhHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHH
Q 048111 199 KSHKFEQ-ERGHP---------ASAIECYMKEKEREGVSVTQQEVHEELYKKVGDAWKDINE 250 (304)
Q Consensus 199 ~s~~~E~-~~G~~---------~n~V~~ym~e~~~~g~~~s~eeA~~~i~~~i~~~~k~ln~ 250 (304)
..+.-+. .-|+. .+.+.++ | .|.|.+.+++.++++.+.|..
T Consensus 219 lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~-------~----l~~a~~~~~~~~~~A~~~L~~ 269 (297)
T 3m0g_A 219 LDVEGNEEAAGKRLGKDAEAHKATFVSLL-------G----LAGAKSRAADLVAEAEAALAP 269 (297)
T ss_dssp C---------------------CCHHHHH-------C----SSHHHHHHHHHHHHHHHHTGG
T ss_pred HhccCCHHHhCCCccchhhcCCccHHHHH-------H----HHHHHHHHHHHHHHHHHHHHh
Confidence 9885432 22221 1333222 3 467888889999999888764
No 23
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=84.22 E-value=8.1 Score=34.60 Aligned_cols=134 Identities=10% Similarity=0.047 Sum_probs=75.5
Q ss_pred HHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHh--CCCCCCHHHHhhccchhHHHHHHHHHHHHhcCccc
Q 048111 123 LVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLG--MDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIKS 200 (304)
Q Consensus 123 ~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi~s 200 (304)
++.+-..+..|.. ..||.++|+..-..-+|....... ..+ ++...+++..+. ..++-+..++..-+.||+..
T Consensus 154 ~~~GQ~lDl~~~~--~~~s~~~y~~i~~~KTg~L~~~~~-~~ga~lag~~~~~~~~~---l~~~g~~lGlaFQI~DDilD 227 (304)
T 3lsn_A 154 MVGGQAIDLGSVG--LKLDQQALEYMHRHKTGALIEASV-ILGALASGRAEKGELKA---LQTYAQAIGLAFQVQDDILD 227 (304)
T ss_dssp HHHHHHHHHHTTT--CCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTTCCCHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccC--CCCCHHHHHHHHHhhhHHHHHHHH-HHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 5666666667654 358999999886544444432221 222 222225555443 35678888999999999988
Q ss_pred hhhhh-hcCCC---------chhHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHH
Q 048111 201 HKFEQ-ERGHP---------ASAIECYMKEKEREGVSVTQQEVHEELYKKVGDAWKDINEECLMPTEVPRALLMRVLNLS 270 (304)
Q Consensus 201 ~~~E~-~~G~~---------~n~V~~ym~e~~~~g~~~s~eeA~~~i~~~i~~~~k~ln~~~l~~~~~p~~~~~~~ln~a 270 (304)
+.-+. .-|+. .+.+.+ ...|.|.+.+++.++++.+.|.. +|. -++....++
T Consensus 228 ~~~~~~~~GK~~g~Dl~egK~T~p~l-----------~~l~~a~~~a~~~~~~A~~~L~~-------l~~-~~~~L~~l~ 288 (304)
T 3lsn_A 228 VESDTATLGKRQGADIARDKPTYPAL-----------LGLAAAKEYALELRDQALHALRP-------FDA-AAEPLRELA 288 (304)
T ss_dssp HHHHHHHC------------CCHHHH-----------HCHHHHHHHHHHHHHHHHHHTTT-------SCG-GGHHHHHHH
T ss_pred ccCChHHhCCCcccHHhcCCccHHHH-----------HHHHHHHHHHHHHHHHHHHHHHh-------Cch-hHHHHHHHH
Confidence 86432 22321 122222 23688889999999999877763 553 244445555
Q ss_pred hhhhhhcccCCCC
Q 048111 271 RVIDIIYKEADDY 283 (304)
Q Consensus 271 R~~~~~Y~~~D~~ 283 (304)
..+ ..+...|+
T Consensus 289 ~~~--~~R~~~~~ 299 (304)
T 3lsn_A 289 RYI--VERRSEGH 299 (304)
T ss_dssp HHH--HC------
T ss_pred HHH--HHhccccc
Confidence 444 44545554
No 24
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=82.60 E-value=14 Score=33.40 Aligned_cols=112 Identities=11% Similarity=0.050 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHh--CCCCCCHHHHhhccchhHHHHHHHHHHHHhcCcc
Q 048111 122 ILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLG--MDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIK 199 (304)
Q Consensus 122 ~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 199 (304)
.++.|-..+..|.. ..||.++|+..-..-+|.-..... ..+ ++...+++..+. ..++-+..++..-+.||+.
T Consensus 159 ~m~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~a~-~~Ga~lag~a~~~~~~~---l~~~g~~lGlAFQI~DDiL 232 (324)
T 3ts7_A 159 GMVGGQAIDLASVG--KKLDLPGLENMHIRKTGALIRASV-RLACLARPGLPAEQFDR---LDHYAKCIGLAFQIQDDIL 232 (324)
T ss_dssp THHHHHHHHHHTTT--CCCCHHHHHHHHHHHTHHHHHHHH-HHHHTTSTTCCHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHccC--CCCCHHHHHHHHHhhHHHHHHHHH-HHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 45666666667654 378999999886555554433222 222 222245555443 3567888888999999998
Q ss_pred chhhh-hhcCCC---------chhHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHH
Q 048111 200 SHKFE-QERGHP---------ASAIECYMKEKEREGVSVTQQEVHEELYKKVGDAWKDINE 250 (304)
Q Consensus 200 s~~~E-~~~G~~---------~n~V~~ym~e~~~~g~~~s~eeA~~~i~~~i~~~~k~ln~ 250 (304)
.+.-+ ..-|+. .+.+.+ ...|.|.+.+++.++++.+.|..
T Consensus 233 D~~~d~~~~GK~~g~Dl~egK~T~p~l-----------~gle~a~~~a~~~~~~A~~~L~~ 282 (324)
T 3ts7_A 233 DEESDTQTLGKTRGKDRDHNKPNYPAL-----------LGLSGAKEKAEEMHEAALESLAG 282 (324)
T ss_dssp HHTCC---------------CCCHHHH-----------HCHHHHHHHHHHHHHHHHHTTTT
T ss_pred hccCCHHHhCCCccchhhcCCccHHHH-----------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 77532 122221 133322 13688889999999998877653
No 25
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=80.21 E-value=14 Score=33.85 Aligned_cols=107 Identities=9% Similarity=0.062 Sum_probs=65.5
Q ss_pred eehhhHHHHHHHHHHHHHHHhHhh----------CCC-CCChHHHHhhhhhhhchhHHHHHHHHhCCCCCCHHHHhhccc
Q 048111 112 RVHYAKEEMKILVHGYHDESKWFH----------NNY-VPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSE 180 (304)
Q Consensus 112 ~~~~~~~~w~~~~~~~~~Ea~w~~----------~~~-~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~~~~e~~~~~~~ 180 (304)
.+..+.++...++.|-..+..|.. .+. .||.++|+..-..-+|.....++-.-++--..+++..+.
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~--- 209 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEA--- 209 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHH---
Confidence 355677777888888888888862 223 679999998877666655433221111101245554443
Q ss_pred hhHHHHHHHHHHHHhcCccchhh-----------hhhcCCCchhHHHHHhhc
Q 048111 181 KPRIIRASTIIGRLVNDIKSHKF-----------EQERGHPASAIECYMKEK 221 (304)
Q Consensus 181 ~~~l~~~~~~i~rL~NDi~s~~~-----------E~~~G~~~n~V~~ym~e~ 221 (304)
..++-+..++..-+.||+..+-- +...|+..+...+|..++
T Consensus 210 l~~~g~~lG~aFQI~DD~lD~~gd~~~~GK~~g~Dl~egK~~T~p~i~al~~ 261 (358)
T 4dhd_A 210 AWNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSH 261 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-------CTTHHHHTTBSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhcCCCchhhHhcCChhhHHHHHHHHh
Confidence 35677888888888898887642 223344425555665554
No 26
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=80.07 E-value=17 Score=32.92 Aligned_cols=104 Identities=15% Similarity=0.117 Sum_probs=65.3
Q ss_pred ehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHhCCCCCCHHHHhhccchhHHHHHHHHHH
Q 048111 113 VHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSEKPRIIRASTIIG 192 (304)
Q Consensus 113 ~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~~~~e~~~~~~~~~~l~~~~~~i~ 192 (304)
+..+.++...++.+-..+..|.... ..|.++|+..-..-+|.........-++--..+++..+. ..++-...++..
T Consensus 139 ~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~---l~~~g~~lG~aF 214 (342)
T 1wy0_A 139 LEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKA---LSSWGRNVGIAF 214 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHHHH
Confidence 5556667778888888888886543 459999999877666655433221111101245555443 356788889999
Q ss_pred HHhcCccchhhh-----------hhcCCCchhHHHHHhhc
Q 048111 193 RLVNDIKSHKFE-----------QERGHPASAIECYMKEK 221 (304)
Q Consensus 193 rL~NDi~s~~~E-----------~~~G~~~n~V~~ym~e~ 221 (304)
-+.||+..+.-+ ...|+. +...+|..++
T Consensus 215 QI~DD~lD~~~d~~~~GK~~g~Dl~egK~-Tlp~i~al~~ 253 (342)
T 1wy0_A 215 QIWDDVLDLIADEKKLGKPVGSDIRKGKK-TLIVAHFFEN 253 (342)
T ss_dssp HHHHHHHHHHSCHHHHTSCSCHHHHHTCC-CHHHHHHHHH
T ss_pred HHHHHHHhccCChhhhCCCchhHHhCCCC-cHHHHHHHHh
Confidence 999999887532 223443 5666666554
No 27
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=79.97 E-value=6.7 Score=35.06 Aligned_cols=113 Identities=8% Similarity=0.008 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHh-CCCCCCHHHHhhccchhHHHHHHHHHHHHhcCcc
Q 048111 121 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLG-MDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIK 199 (304)
Q Consensus 121 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 199 (304)
..++.+-..+..|.. ..+|.++|+..-..-+|.........-+ ++ ..+++..+. ..++-...++..-+.||+.
T Consensus 148 ~~~~~GQ~~Dl~~~~--~~~~~~~y~~i~~~KTa~L~~~~~~~ga~la-g~~~~~~~~---l~~~g~~lG~aFQI~DDil 221 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEG--QPIDLETLEMIHKTKTGALLTFAVMSAADIA-NVDDTTKEH---LESYSYHLGMMFQIKDDLL 221 (301)
T ss_dssp TTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHH-TCCHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccC--CCCCHHHHHHHHHhchHHHHHHHHHHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 446666666667654 3789999999877666655332221111 11 145555443 3567888899999999998
Q ss_pred chhhhh-hcCCC---------chhHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHH
Q 048111 200 SHKFEQ-ERGHP---------ASAIECYMKEKEREGVSVTQQEVHEELYKKVGDAWKDINE 250 (304)
Q Consensus 200 s~~~E~-~~G~~---------~n~V~~ym~e~~~~g~~~s~eeA~~~i~~~i~~~~k~ln~ 250 (304)
.+.-+. .-|+. .+...+| ..|.|.+.+++.++++.+.|..
T Consensus 222 D~~~d~~~~GK~~g~Dl~~gK~T~p~l~-----------al~~a~~~a~~~~~~A~~~L~~ 271 (301)
T 1rtr_A 222 DCYGDEAKLGKKVGSDLENNKSTYVSLL-----------GKDGAEDKLTYHRDAAVDELTQ 271 (301)
T ss_dssp HHHHHHCC-------------CCHHHHH-----------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhcCCHHHhCCCcchHHHcCCCcHHHHH-----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 875432 22321 1222221 2577888888999999888765
No 28
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=79.69 E-value=23 Score=31.19 Aligned_cols=126 Identities=10% Similarity=-0.052 Sum_probs=77.4
Q ss_pred eehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHH--HhCCCCCCHHHHhhccchhHHHHHHH
Q 048111 112 RVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASF--LGMDSVVTKEAFDWVSEKPRIIRAST 189 (304)
Q Consensus 112 ~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~--~~~g~~~~~e~~~~~~~~~~l~~~~~ 189 (304)
.+..+.++...++.+-..+..|......+|.++|+..-..-+|......... +..| .+++. ..++-+..+
T Consensus 135 ~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~~------l~~~g~~lG 206 (284)
T 2ftz_A 135 IFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXG--XDHTX------MXLLGEXFG 206 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCHH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhC--CChhH------HHHHHHHHH
Confidence 4555666678888888888888765447899999998776666543322211 1113 23331 246788889
Q ss_pred HHHHHhcCccchhhhh-hcCCC-chhHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHH
Q 048111 190 IIGRLVNDIKSHKFEQ-ERGHP-ASAIECYMKEKEREGVSVTQQEVHEELYKKVGDAWKDINE 250 (304)
Q Consensus 190 ~i~rL~NDi~s~~~E~-~~G~~-~n~V~~ym~e~~~~g~~~s~eeA~~~i~~~i~~~~k~ln~ 250 (304)
+...+.||+..+.-+. ..|+. ++=+. ....| - ....|.|.+.+++.++++.+.|..
T Consensus 207 ~aFQI~DD~lD~~~d~~~~GK~~g~Dl~--K~T~p--~-l~~l~~a~~~a~~~~~~A~~~L~~ 264 (284)
T 2ftz_A 207 VAFQIYDDLXDILGSFEKVGKDLGKDTE--XVTLV--X-XVGIQXAREMADXYYEEVLXGIES 264 (284)
T ss_dssp HHHHHHHHHHHHHHHCCCC-------------CHH--H-HHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCCHHhhCCCcchhcc--ccchH--H-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999886543 23431 11111 00011 0 024678899999999999988876
No 29
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=79.03 E-value=24 Score=31.92 Aligned_cols=89 Identities=17% Similarity=0.042 Sum_probs=55.4
Q ss_pred ceehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHhCCCCCCHHHHhhccchhHHHHHHHH
Q 048111 111 YRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSEKPRIIRASTI 190 (304)
Q Consensus 111 ~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~~~~e~~~~~~~~~~l~~~~~~ 190 (304)
..+..+.+....++.+-..+..|... ..+|.++|+..-..-+|......+..-++--..+++..+. ..++-+..++
T Consensus 153 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~---l~~~g~~lG~ 228 (348)
T 3apz_A 153 EVVALLATAVEHLVTGETMEITSSTE-QRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVL---AFEYGRNLGL 228 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHH-HHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHH---HHHHHHHHHH
Confidence 34556667777888887777766432 3579999998766655554433221111111245554443 3567788888
Q ss_pred HHHHhcCccchhh
Q 048111 191 IGRLVNDIKSHKF 203 (304)
Q Consensus 191 i~rL~NDi~s~~~ 203 (304)
..-+.||+..+--
T Consensus 229 aFQi~DD~lD~~g 241 (348)
T 3apz_A 229 AFQLIDDILDFTG 241 (348)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHhhccC
Confidence 8889999888754
No 30
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=79.01 E-value=34 Score=30.84 Aligned_cols=102 Identities=13% Similarity=0.050 Sum_probs=62.4
Q ss_pred eehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHh--CCCCCCHHHHhhccchhHHHHHHH
Q 048111 112 RVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLG--MDSVVTKEAFDWVSEKPRIIRAST 189 (304)
Q Consensus 112 ~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~~~~e~~~~~~~~~~l~~~~~ 189 (304)
.+..+.+....++.+-+.+..|.. +..||.++|+..-..-+|...... +..+ ++ ..+++..+. ..++-+..+
T Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~~-~~~ga~la-g~~~~~~~~---l~~~g~~lG 217 (334)
T 3pko_A 144 LIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALS-CYQGAQLA-GAPQSVIDR---TRDIGIAIG 217 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHHH-HHHHHHHT-TCCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHc-CCCHHHHHH---HHHHHHHHH
Confidence 355566777788888777777643 356899999987655555543222 2222 12 235554443 356677788
Q ss_pred HHHHHhcCccchhh-----------hhhcCCCchhHHHHHhh
Q 048111 190 IIGRLVNDIKSHKF-----------EQERGHPASAIECYMKE 220 (304)
Q Consensus 190 ~i~rL~NDi~s~~~-----------E~~~G~~~n~V~~ym~e 220 (304)
+..-+.||+..+.- +...|+. +...+|..+
T Consensus 218 ~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~-Tlp~i~al~ 258 (334)
T 3pko_A 218 CAYQMLDDILDYAGDPKRTQKPVLEDLRSGVY-SLPLLLSLS 258 (334)
T ss_dssp HHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCC-CHHHHHHGG
T ss_pred HHHHHHHHHHhccCChhhcCCCCCCccccCch-hHHHHHHHH
Confidence 88888888876642 3345554 555566554
No 31
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=78.85 E-value=34 Score=30.13 Aligned_cols=201 Identities=13% Similarity=0.129 Sum_probs=98.7
Q ss_pred HHHhhhhcccCCCchHHHHHHHHHHHHHHhhhhhhccCCC--HHHHHHHHHhhhhccccccccCchhHHHHHHHHHHHHH
Q 048111 21 SYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYAT--PKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYK 98 (304)
Q Consensus 21 ~yf~~~~~~feP~~s~~R~~~ak~~~l~~~iDD~~D~~~t--~eel~~~t~ai~rWd~~~~~~lp~~~k~~~~~l~~~~~ 98 (304)
+|+++. .|-|.- .|-...-+-.|.=.+||+-|.... ...|+.+-+.+++-- ..-|. .+++.+|..++.
T Consensus 28 sF~~a~--~~lp~~--~R~~~~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~~~----~g~~~--~pv~~al~~~~~ 97 (294)
T 4hd1_A 28 NFSVVS--LFVPRH--LRPHFYSVYAFCRGVDDLGDEFAGDRMAALDAYEEELRRAF----AGEAT--TPAFRALQFTIA 97 (294)
T ss_dssp THHHHT--TTCCTT--THHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHHHH----HTCCC--SHHHHHHHHHHH
T ss_pred cHHHHH--HHCCHH--HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHh----cCCCC--CHHHHHHHHHHH
Confidence 455543 333432 343334456777789999997532 234444444443211 11122 256777776664
Q ss_pred HHHHHHHhcCCcceehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHhCCCCCCHHHHhhc
Q 048111 99 EIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWV 178 (304)
Q Consensus 99 ei~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~~~~e~~~~~ 178 (304)
+.. - -++.+.+++.++..... ....+|++|+..+...+.|.--.+++..+ |.. +++...
T Consensus 98 ~~~--------l-----~~~~~~~li~g~~~Dl~---~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~--g~~-~~~~~~-- 156 (294)
T 4hd1_A 98 TCN--------L-----PMEPFLRLIEANRRDQR---KHTYDTWEDLRDYCRYSADPVGRLVLGIF--GCL-DDERAR-- 156 (294)
T ss_dssp HHT--------C-----CSHHHHHHHHHHHHHHH---CSBCCSHHHHHHHHHHHTHHHHHHHHHHT--TCC-SHHHHH--
T ss_pred HcC--------C-----CHHHHHHHHHHHHhccc---cCCCCCHHHHHHHHHhccchHHHHHHHHh--CCC-CHHHHH--
Confidence 432 0 12445667777754432 34567888877777666655444343333 322 223222
Q ss_pred cchhHHHHHHHHHHHHhcCccchhhhhhcCCC--chhHHHHHhhcccCCcccCHHHH---------HHHHHHHHHHHHHH
Q 048111 179 SEKPRIIRASTIIGRLVNDIKSHKFEQERGHP--ASAIECYMKEKEREGVSVTQQEV---------HEELYKKVGDAWKD 247 (304)
Q Consensus 179 ~~~~~l~~~~~~i~rL~NDi~s~~~E~~~G~~--~n~V~~ym~e~~~~g~~~s~eeA---------~~~i~~~i~~~~k~ 247 (304)
.....+...-|.|=+.....+..+|.+ +. -.|.++ | +|.++- ..-+..+++.+..-
T Consensus 157 -----~A~~lG~AlQltNilRDv~eD~~~gR~YlP~---~~l~~~---g--v~~~dl~~~~~~~~~~~~~~~~~~~A~~~ 223 (294)
T 4hd1_A 157 -----LSDATCTALQVANHMQDIDRDLALGRIYVPR---ADLEQF---G--ATLDDIRARRATDGVRRCIALEVDRAQAL 223 (294)
T ss_dssp -----HHHHHHHHHHHHHHHHTHHHHHHTTCBCSCH---HHHHTT---T--CCHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHhchhhhccCceeCCH---HHHHHc---C--CCHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 122233333344433334455566754 43 346788 8 887752 22234444444433
Q ss_pred HHHhhcCCCCCcHHHHHH
Q 048111 248 INEECLMPTEVPRALLMR 265 (304)
Q Consensus 248 ln~~~l~~~~~p~~~~~~ 265 (304)
+.+..-....+|..+...
T Consensus 224 ~~~a~~~~~~lp~~~r~~ 241 (294)
T 4hd1_A 224 FDEGRRLESLVPPRLARQ 241 (294)
T ss_dssp HHHHGGGGGSSCHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHH
Confidence 332221124578765443
No 32
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=77.78 E-value=16 Score=32.59 Aligned_cols=111 Identities=13% Similarity=0.089 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHh--CCCCCCHHHHhhccchhHHHHHHHHHHHHhcCcc
Q 048111 122 ILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLG--MDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIK 199 (304)
Q Consensus 122 ~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 199 (304)
.++.+-..+..|. +..||.++|...-..-+|....... ..+ ++ ..+++..+. ..++-+..++..-+.||+.
T Consensus 157 ~~~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~~~-~~ga~la-ga~~~~~~~---l~~~g~~lGlaFQI~DDil 229 (302)
T 3p8l_A 157 GMVSGQMGDIEGE--KVSLTLEELAAVHEKKTGALIEFAL-IAGGVLA-NQTEEVIGL---LTQFAHHYGLAFQIRDDLL 229 (302)
T ss_dssp THHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc--CCCCCHHHHHHHHHcCcHHHHHHHH-HHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3556666666664 3478999999875444444332221 221 12 235554443 3567888888999999998
Q ss_pred chhhh-hhcCCC-----c----hhHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHH
Q 048111 200 SHKFE-QERGHP-----A----SAIECYMKEKEREGVSVTQQEVHEELYKKVGDAWKDINE 250 (304)
Q Consensus 200 s~~~E-~~~G~~-----~----n~V~~ym~e~~~~g~~~s~eeA~~~i~~~i~~~~k~ln~ 250 (304)
.+.-+ ..-|+. . +...+ ...+.|.+.+++.++++.+.|..
T Consensus 230 D~~~d~~~~GK~~g~Dl~egK~T~p~l-----------~~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 230 DATSTEADLGKKVGRDEALNKSTYPAL-----------LGIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp HTTC-----------------CCHHHH-----------HCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHhCCChhhHHhcCCCcHHHH-----------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 87432 122221 1 22222 23788999999999999988875
No 33
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=76.66 E-value=16 Score=33.04 Aligned_cols=112 Identities=10% Similarity=0.061 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHH--HhCCCCCCHHHHhhccchhHHHHHHHHHHHHhcCc
Q 048111 121 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASF--LGMDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDI 198 (304)
Q Consensus 121 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~--~~~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi 198 (304)
..++.+-..+..|... .+|.++|+..-..-+|......... +..| .+++..+. ..++-+..++..-+.||+
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~~~Ga~lag--a~~~~~~~---l~~~g~~lGlAFQI~DDi 264 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFACEAGAIIAG--SNQAERQR---LRLFGEKIGLSFQLADDL 264 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHhC--CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4566777777777654 7899999998877666553322211 1113 45555443 356788889999999999
Q ss_pred cchhhhh-hcCCC---------chhHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHH
Q 048111 199 KSHKFEQ-ERGHP---------ASAIECYMKEKEREGVSVTQQEVHEELYKKVGDAWKDINE 250 (304)
Q Consensus 199 ~s~~~E~-~~G~~---------~n~V~~ym~e~~~~g~~~s~eeA~~~i~~~i~~~~k~ln~ 250 (304)
..+.-+. .-|+. .+...+ + | .|.|.+.+.+.++++.+.|..
T Consensus 265 LD~~gd~~~~GK~~g~Dl~egK~T~p~l----~---~----le~a~~~a~~~~~~A~~~L~~ 315 (335)
T 2h8o_A 265 LDLTADAATMGKATGKDAARGKGTLVAL----R---G----EAWAREKLQEQVAEASELLAP 315 (335)
T ss_dssp HHHC-----------------CCCHHHH----H---C----HHHHHHHHHHHHHHHHHHTGG
T ss_pred HHhcCCHHHhCCCcchHHhcCCccHHHH----H---H----HHHHHHHHHHHHHHHHHHHHh
Confidence 8875332 12221 133322 1 3 678899999999999988765
No 34
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=76.38 E-value=10 Score=33.82 Aligned_cols=112 Identities=13% Similarity=0.064 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHh--CCCCCCHHHHhhccchhHHHHHHHHHHHHhcCcc
Q 048111 122 ILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLG--MDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIK 199 (304)
Q Consensus 122 ~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 199 (304)
.++.+-..+..|. +..||.++|+..-..-+|....... ..+ ++...+++..+. ..++-+..++..-+.||+.
T Consensus 159 ~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~~~-~~ga~lag~~~~~~~~~---l~~~g~~lG~aFQI~DDil 232 (302)
T 3p8r_A 159 GMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRCAI-RLGALAAGEKGRAMLPH---LDRYAEAVGLAFQVQDDIL 232 (302)
T ss_dssp THHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHTTTHHHHTTHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHHHH-HHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4567777777775 4578999999886555554433222 222 121123333222 3567788888999999998
Q ss_pred chhhhh-hcCCC---------chhHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHH
Q 048111 200 SHKFEQ-ERGHP---------ASAIECYMKEKEREGVSVTQQEVHEELYKKVGDAWKDINE 250 (304)
Q Consensus 200 s~~~E~-~~G~~---------~n~V~~ym~e~~~~g~~~s~eeA~~~i~~~i~~~~k~ln~ 250 (304)
.+.-+. ..|+. .+...+| ..|.|.+.+++.++++.+.|+.
T Consensus 233 D~~~~~~~~GK~~g~Dl~egK~T~p~l~-----------~l~~a~~~a~~~~~~A~~~L~~ 282 (302)
T 3p8r_A 233 DIISDTETLGKPQGSDQELNKSTYPALL-----------GLEGAQQKAHTLLQEALLALEA 282 (302)
T ss_dssp HHTTC---------------CCCHHHHH-----------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred hccCCHHHhCCCcchHHhcCCchHHHHH-----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 875332 22321 1222221 2678888889999999887764
No 35
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=75.59 E-value=26 Score=31.40 Aligned_cols=114 Identities=11% Similarity=0.036 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHhCCCC-CCHHHHhhccchhHHHHHHHHHHHHhcCccc
Q 048111 122 ILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSV-VTKEAFDWVSEKPRIIRASTIIGRLVNDIKS 200 (304)
Q Consensus 122 ~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~-~~~e~~~~~~~~~~l~~~~~~i~rL~NDi~s 200 (304)
.++.+-..+..|... ..||.++|+..-..-+|.-.........++.. .+++..+. ..++-+..++..-+.||+..
T Consensus 159 ~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~a~lag~~a~~~~~~~---l~~~g~~lGlaFQI~DDilD 234 (313)
T 3lom_A 159 GMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSA---LRTYGKHIGLVFQMQDDYLD 234 (313)
T ss_dssp THHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 456676666676432 37899999988655555443332222223332 56665544 35678888899999999988
Q ss_pred hhhhh-hcCCC---------chhHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHH
Q 048111 201 HKFEQ-ERGHP---------ASAIECYMKEKEREGVSVTQQEVHEELYKKVGDAWKDINE 250 (304)
Q Consensus 201 ~~~E~-~~G~~---------~n~V~~ym~e~~~~g~~~s~eeA~~~i~~~i~~~~k~ln~ 250 (304)
+.-+. .-|+. .+.+.+ ...|.|.+.+++.++++.+.|..
T Consensus 235 ~~gd~~~~GK~~g~Dl~~gK~T~p~l-----------~~l~~a~~~a~~~~~~A~~~L~~ 283 (313)
T 3lom_A 235 LYAPTQILGKGRSSDQANQKTTFATL-----------FNKQQLEEEIAVHYQIAMDSLRL 283 (313)
T ss_dssp HHCC---------------CCCHHHH-----------SCHHHHHHHHHHHHHHHHHTTTT
T ss_pred ccCCHHhhCCCCcchhhcCCccHHHH-----------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 75332 22221 122221 23788999999999999877763
No 36
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=74.54 E-value=21 Score=32.11 Aligned_cols=111 Identities=13% Similarity=0.068 Sum_probs=66.5
Q ss_pred HHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHh--CCCCCCHHHHhhccchhHHHHHHHHHHHHhcCccc
Q 048111 123 LVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLG--MDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIKS 200 (304)
Q Consensus 123 ~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi~s 200 (304)
++.|-..+..|. +..||.++|+..-..-+|.-..... ..+ ++...+++..+. ..++-+..++..-+.||+..
T Consensus 153 m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~-~~Ga~lag~a~~~~~~~---l~~~g~~lGlAFQI~DDiLD 226 (317)
T 4f62_A 153 MITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKASV-RMGALSTGQVKPEQLAK---LDAYAHAIGLAFQVQDDIID 226 (317)
T ss_dssp HHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHTTTCCCHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHHHH-HHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 556666666665 4458999999886554554432221 222 232245555443 35678888899999999988
Q ss_pred hhhhh-hcCCC---------chhHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHH
Q 048111 201 HKFEQ-ERGHP---------ASAIECYMKEKEREGVSVTQQEVHEELYKKVGDAWKDINE 250 (304)
Q Consensus 201 ~~~E~-~~G~~---------~n~V~~ym~e~~~~g~~~s~eeA~~~i~~~i~~~~k~ln~ 250 (304)
+.-+. .-|+. .+...+| ..|.|.+.+++.++++.+.|..
T Consensus 227 ~~gd~~~~GK~~g~Dl~egK~T~p~l~-----------gle~a~~~a~~~~~~A~~~L~~ 275 (317)
T 4f62_A 227 LTSDTETLGKTQFSDAEANKATYPKLL-----------GLDGAKALVVRLHEQAIAQISE 275 (317)
T ss_dssp TC----------------CCCCHHHHH-----------HHHHHHHHHHHHHHHHHHHHGG
T ss_pred ccCChHhhCCCcchHHhcCCCcHHHHH-----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 75332 22321 1333222 2678889999999999988775
No 37
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=72.61 E-value=56 Score=29.64 Aligned_cols=85 Identities=12% Similarity=0.068 Sum_probs=57.1
Q ss_pred ehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHh-CCCCCCHHHHhhccchhHHHHHHHHH
Q 048111 113 VHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLG-MDSVVTKEAFDWVSEKPRIIRASTII 191 (304)
Q Consensus 113 ~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~~~~e~~~~~~~~~~l~~~~~~i 191 (304)
+..+.++...++.+-..+..|... ..||.++|+..-..-+|......+ ..+ +--..+++..+. ...+-+..++.
T Consensus 145 ~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag~~~~~~~~---l~~~g~~lG~a 219 (352)
T 3nf2_A 145 TRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACAS-SIGAVLGGADERTADT---LEKYGYHLGLA 219 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTTCCHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHHH-HHHHHHcCCCHHHHHH---HHHHHHHHHHH
Confidence 555667778888888888888643 378999999887766665543322 222 101245555443 35678888889
Q ss_pred HHHhcCccchh
Q 048111 192 GRLVNDIKSHK 202 (304)
Q Consensus 192 ~rL~NDi~s~~ 202 (304)
.-+.||+..+-
T Consensus 220 FQi~DD~ld~~ 230 (352)
T 3nf2_A 220 FQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999988774
No 38
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=69.26 E-value=30 Score=30.88 Aligned_cols=110 Identities=7% Similarity=-0.006 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHh--CCCCCCHHHHhhccchhHHHHHHHHHHHHhcCcc
Q 048111 122 ILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLG--MDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIK 199 (304)
Q Consensus 122 ~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 199 (304)
.++.+-..+..|. +..+|.++|...-..-+|....... ..+ ++ ..+++..+. ..++.+..++..-+.||+.
T Consensus 156 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~-~~ga~la-ga~~~~~~~---l~~~g~~lGlaFQI~DDiL 228 (309)
T 3pde_A 156 GMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGALLHYAV-QAGLILG-QAPEAQWPA---YLQFADAFGLAFQIYDDIL 228 (309)
T ss_dssp THHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHT-TCCGGGHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHHHHHHH-HHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3455656666664 4468999999886554554432222 221 12 234443333 3567788888889999998
Q ss_pred chhhh-----------hhcCCCchhHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHH
Q 048111 200 SHKFE-----------QERGHPASAIECYMKEKEREGVSVTQQEVHEELYKKVGDAWKDINE 250 (304)
Q Consensus 200 s~~~E-----------~~~G~~~n~V~~ym~e~~~~g~~~s~eeA~~~i~~~i~~~~k~ln~ 250 (304)
.+.-+ ...|+. +.+.+| ..+.|.++.+++++++.+.|..
T Consensus 229 D~~gd~~~~GK~~g~Dl~egK~-T~p~l~-----------al~~a~~~~~~~~~~a~~~l~~ 278 (309)
T 3pde_A 229 DVVSSPAEMGKATQKDADEAKN-TYPGKL-----------GLIGANQALIDTIHSGQAALQG 278 (309)
T ss_dssp HHHCC-----------CTTTSS-SHHHHH-----------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCCHHHhCCCccchhhcCCc-cHHHHH-----------HHHHhHHHHHHHHHHHHHHHHH
Confidence 77432 222332 333332 3677888888999999888764
No 39
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=68.02 E-value=62 Score=28.28 Aligned_cols=204 Identities=17% Similarity=0.084 Sum_probs=103.9
Q ss_pred HHHhhhhcccCCCchHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHhhhhcccccc---ccCchhHHHHHHHHHHHH
Q 048111 21 SYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYATPKELDLFTAAIDRWDMSCM---DQLPEYMQIFYEALLDLY 97 (304)
Q Consensus 21 ~yf~~~~~~feP~~s~~R~~~ak~~~l~~~iDD~~D~~~t~eel~~~t~ai~rWd~~~~---~~lp~~~k~~~~~l~~~~ 97 (304)
+|+++. .+-|. ..|-.+.-+-.|.-.+||+=|......+++.+-+.+++--.... ...|. .++..+|..++
T Consensus 27 sF~~a~--~~Lp~--~~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~~~~~~~~~~--~pv~~al~~~~ 100 (293)
T 3acx_A 27 SFSYAF--DLLPE--DQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSD--RRIMMALQHVA 100 (293)
T ss_dssp HHHHHH--TTSCH--HHHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHHHCTTSCCCCSSC--HHHHHHHHHHH
T ss_pred cHHHHH--HhCCH--HHHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHhCCCCcccCCCCC--CHHHHHHHHHH
Confidence 455444 33343 34555556778888899999986544446655555543100000 00022 35666676665
Q ss_pred HHHHHHHHhcCCcceehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHhCCCCCCHHHHhh
Q 048111 98 KEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDW 177 (304)
Q Consensus 98 ~ei~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~~~~e~~~~ 177 (304)
.+. + --++.+.+++.++... ......+|++|+..+...+.|.--.+++-.++ ..-.++..+
T Consensus 101 ~~~--------~-----l~~~~~~~li~g~~~D---l~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g--~~~~~~~~~- 161 (293)
T 3acx_A 101 QHK--------N-----IAFQSFYNLIDTVYKD---QHFTMFETDAELFGYCYGVAGTVGEVLTPILS--DHETHQTYD- 161 (293)
T ss_dssp HHS--------C-----CCHHHHHHHHHHHHHH---TTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHC--SSCCHHHHH-
T ss_pred HHh--------C-----CCHHHHHHHHHHHHHH---cCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhC--CCCcHHHHH-
Confidence 332 2 1245567777777533 33446778888887777776655544444443 321122222
Q ss_pred ccchhHHHHHHHHHHHHhcCccchhhhhhcCCC--chhHHHHHhhcccCCcccCHHHH---------HHHHHHHHHHHHH
Q 048111 178 VSEKPRIIRASTIIGRLVNDIKSHKFEQERGHP--ASAIECYMKEKEREGVSVTQQEV---------HEELYKKVGDAWK 246 (304)
Q Consensus 178 ~~~~~~l~~~~~~i~rL~NDi~s~~~E~~~G~~--~n~V~~ym~e~~~~g~~~s~eeA---------~~~i~~~i~~~~k 246 (304)
.....+...-|.|=+........+|.+ +.- -|.++ | +|.++- .+-+..++..+..
T Consensus 162 ------~A~~lG~AlQltNilRDv~eD~~~gR~YLP~d---~l~~~---g--v~~e~l~~~~~~~~~~~~~~~l~~~A~~ 227 (293)
T 3acx_A 162 ------VARRLGESLQLINILRDVGEDFENERIYFSKQ---RLKQY---E--VDIAEVYQNGVNNHYIDLWEYYAAIAEK 227 (293)
T ss_dssp ------HHHHHHHHHHHHHHHHCHHHHHHTTCCCSCHH---HHHHH---T--CCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhCCcEEeCHH---HHHHc---C--CCHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 222333333333333333445556754 332 35678 8 887762 2345556666655
Q ss_pred HHHHhhcCCCCCcHHHH
Q 048111 247 DINEECLMPTEVPRALL 263 (304)
Q Consensus 247 ~ln~~~l~~~~~p~~~~ 263 (304)
.+.+-.-....+|....
T Consensus 228 ~~~~a~~~~~~lp~~~r 244 (293)
T 3acx_A 228 DFRDVMDQIKVFSIEAQ 244 (293)
T ss_dssp HHHHHHHTGGGSCTTHH
T ss_pred HHHHHHHhHHhCCHHHH
Confidence 55433211134554433
No 40
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=68.02 E-value=58 Score=28.74 Aligned_cols=113 Identities=12% Similarity=0.115 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHh--CCCCCCHHHHhhccchhHHHHHHHHHHHHhcC
Q 048111 120 MKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLG--MDSVVTKEAFDWVSEKPRIIRASTIIGRLVND 197 (304)
Q Consensus 120 w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~ND 197 (304)
...++.+-..+..|. +..||.++|...-..-+|....... ..+ ++ ..+++..+. ..++-+..++..-+.||
T Consensus 144 ~~~~~~GQ~lDl~~~--~~~~~~~~y~~i~~~KTg~L~~~a~-~~ga~la-ga~~~~~~~---l~~~g~~lGlaFQI~DD 216 (291)
T 3npk_A 144 LNGMVIGQAIDCFFE--DKRLSLNELEFLHTHKTARLIAAAL-KMGCEIC-ELNNEESNQ---IYKLGLKLGLIFQINDD 216 (291)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CCCCCHHHHHHHHHcccHHHHHHHH-HHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 344556666666664 3578999999886555554433222 222 12 245554433 35678888899999999
Q ss_pred ccchhhh-hhcCCCc-------hhHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHH
Q 048111 198 IKSHKFE-QERGHPA-------SAIECYMKEKEREGVSVTQQEVHEELYKKVGDAWKDINE 250 (304)
Q Consensus 198 i~s~~~E-~~~G~~~-------n~V~~ym~e~~~~g~~~s~eeA~~~i~~~i~~~~k~ln~ 250 (304)
+..+.-+ ...|+.. +.+.+ ...|.|..+.+++++++.+.|+.
T Consensus 217 iLD~~gd~~~~GK~~~~d~gK~T~p~l-----------~~l~~a~~~~~~~~~~a~~~l~~ 266 (291)
T 3npk_A 217 IIDVTTSQEQSGKPTNNDIHKNSFVNL-----------LGLEQAIKTKENLLNECEQDLEK 266 (291)
T ss_dssp HHHHC----------------CCHHHH-----------HCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccCChHHHCCccchhcCcchHHHH-----------HHHHHhHHHHHHHHHHHHHHHHH
Confidence 9887643 2234331 22222 23677888888999999888774
No 41
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=67.40 E-value=32 Score=30.93 Aligned_cols=112 Identities=8% Similarity=-0.001 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHh--CCCCCCHHHHhhccchhHHHHHHHHHHHHhcCcc
Q 048111 122 ILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLG--MDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIK 199 (304)
Q Consensus 122 ~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 199 (304)
.++.+-..+..|... ..||.++|...-..-+|.-..... ..+ ++ ..+++..+. ..++-+..++..-+.||+.
T Consensus 181 ~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L~~~a~-~~Ga~la-ga~~~~~~~---l~~~g~~lGlAFQI~DDiL 254 (324)
T 3uca_A 181 GMIGGQIVDIINEDK-EEISLKELDYMHLKKTGELIKASI-MSGAVLA-EASEGDIKK---LEGFGYKLGLAFQIKDDIL 254 (324)
T ss_dssp THHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHHHHHHH-HHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHHH-HHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 456677777776532 368999999885444444332221 221 12 235554443 3567888888999999998
Q ss_pred chhhhh-hcCC-----Cc----hhHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHH
Q 048111 200 SHKFEQ-ERGH-----PA----SAIECYMKEKEREGVSVTQQEVHEELYKKVGDAWKDINE 250 (304)
Q Consensus 200 s~~~E~-~~G~-----~~----n~V~~ym~e~~~~g~~~s~eeA~~~i~~~i~~~~k~ln~ 250 (304)
.+.-+. .-|+ .. +...+ ...+.|.+.+++.++++.+.|..
T Consensus 255 D~~gd~~~~GK~~g~Dl~egK~T~p~l-----------~al~~a~~~a~~~~~~A~~~L~~ 304 (324)
T 3uca_A 255 DVVGNAKDLGKNVHKDQESNKNNYITI-----------FGLEECKKKCVNITEECIEILSS 304 (324)
T ss_dssp HHCCC-----------------CHHHH-----------HCHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCCHHHhCCCcchHhhcCCccHHHH-----------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 774321 1222 11 22222 23688999999999999988875
No 42
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=65.64 E-value=75 Score=28.38 Aligned_cols=102 Identities=17% Similarity=0.111 Sum_probs=63.5
Q ss_pred eehhhHHHHHHHHHHHHHHHhH-hhCCCCCChHHHHhhhhhhhchh-HHHHH--HHHhCCCCCCHHHHhhccchhHHHHH
Q 048111 112 RVHYAKEEMKILVHGYHDESKW-FHNNYVPTMEEYMRVSLVTSAYS-MLTAA--SFLGMDSVVTKEAFDWVSEKPRIIRA 187 (304)
Q Consensus 112 ~~~~~~~~w~~~~~~~~~Ea~w-~~~~~~Ps~eEYl~~~~~s~g~~-~~~~~--~~~~~g~~~~~e~~~~~~~~~~l~~~ 187 (304)
.+..+.+....++.+-..+..| ......||.++|+..-..-+|.. ..... .....|. +++.. ..++-..
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~--~~~~~-----l~~~g~~ 203 (330)
T 1wmw_A 131 VLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGK--TPPAA-----YEEGGLR 203 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTC--CCCHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCC--CHHHH-----HHHHHHH
Confidence 3556677778889999999888 65435689999998877666555 32221 1122232 22221 3467788
Q ss_pred HHHHHHHhcCccchhh----------hhhcCCCchhHHHHHhhc
Q 048111 188 STIIGRLVNDIKSHKF----------EQERGHPASAIECYMKEK 221 (304)
Q Consensus 188 ~~~i~rL~NDi~s~~~----------E~~~G~~~n~V~~ym~e~ 221 (304)
.++..-+.||+..+.- +...|+. +...+|..++
T Consensus 204 lG~aFQi~DD~ld~~~d~~~GK~~g~Dl~egK~-T~p~i~al~~ 246 (330)
T 1wmw_A 204 LGTAFQIVDDVLNLEGGEAYGKERAGDLYEGKR-TLILLRFLEE 246 (330)
T ss_dssp HHHHHHHHHHHHHHSCSCCCSSSTTHHHHHTCC-CHHHHHHHHH
T ss_pred HHHHHHHHHccCcccCCcccCCCcCchhhCCCC-CHHHHHHHHh
Confidence 8888888888887742 2333443 5555665544
No 43
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=63.62 E-value=20 Score=32.07 Aligned_cols=114 Identities=11% Similarity=0.086 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHh-CCCCCCHHHH-hhccchhHHHHHHHHHHHHhcCc
Q 048111 121 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLG-MDSVVTKEAF-DWVSEKPRIIRASTIIGRLVNDI 198 (304)
Q Consensus 121 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~~~~e~~-~~~~~~~~l~~~~~~i~rL~NDi 198 (304)
..++.+-..+..|. +..||.++|+..-..-+|.........-+ ++. .+++.. +. ..++.+..++..-+.||+
T Consensus 159 ~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~lga~lag-a~~~~~~~~---l~~~g~~lGlaFQI~DDi 232 (311)
T 3llw_A 159 KGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISASLIMGLVASG-IKDEELFKW---LQAFGLKMGLCFQVLDDI 232 (311)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC-CCCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 34566666666665 56789999998865555544322221111 111 333333 33 356788888999999999
Q ss_pred cchhhh-hhcCCCchhHHHHHhhcccCCccc------CHHHHHHHHHHHHHHHHHHHHH
Q 048111 199 KSHKFE-QERGHPASAIECYMKEKEREGVSV------TQQEVHEELYKKVGDAWKDINE 250 (304)
Q Consensus 199 ~s~~~E-~~~G~~~n~V~~ym~e~~~~g~~~------s~eeA~~~i~~~i~~~~k~ln~ 250 (304)
..+.-+ ..-|+.... ++. . . ..|.|..+.+++++++.+.|..
T Consensus 233 LD~~gd~~~~GK~~g~-----~~g---K--~T~p~l~~l~~a~~~~~~~~~~a~~~l~~ 281 (311)
T 3llw_A 233 IDVTQDEEESGKTTHL-----DSA---K--NSFVNLLGLERANNYAQTLKTEVLNDLDA 281 (311)
T ss_dssp HHHHC------------------C---C--SCHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhccCChHHHCccccc-----ccC---c--chHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 887643 333443221 122 1 3 3688888889999999887763
No 44
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=60.56 E-value=53 Score=28.98 Aligned_cols=111 Identities=10% Similarity=0.040 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHh--C-CCCCCHHHHhhccchhHHHHHHHHHHHHhcCc
Q 048111 122 ILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLG--M-DSVVTKEAFDWVSEKPRIIRASTIIGRLVNDI 198 (304)
Q Consensus 122 ~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~-g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi 198 (304)
.++.+-..+..|... .+|.++|+..-..-+|....... ..+ + + ..+++..+. ..++-+..++..-+.||+
T Consensus 153 ~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~-~~ga~l~a-g~~~~~~~~---l~~~g~~lG~aFQi~DD~ 225 (299)
T 1rqj_A 153 GMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRAAV-RLGALSAG-DKGRRALPV---LDKYAESIGLAFQVQDDI 225 (299)
T ss_dssp THHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHHHH-HHHHHTTT-HHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHHH-HHHHHHhC-CCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 456677777777543 78999999987665555433222 222 1 1 134444333 356778889999999999
Q ss_pred cchhhhh-hcCCC-c--------hhHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHH
Q 048111 199 KSHKFEQ-ERGHP-A--------SAIECYMKEKEREGVSVTQQEVHEELYKKVGDAWKDINE 250 (304)
Q Consensus 199 ~s~~~E~-~~G~~-~--------n~V~~ym~e~~~~g~~~s~eeA~~~i~~~i~~~~k~ln~ 250 (304)
..+.-+. .-|+. + +...+| ..+.|.+.+++.++++.+.|..
T Consensus 226 lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~-----------~l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 226 LDVVGDTATLGKRQGADQQLGKSTYPALL-----------GLEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp HHHHSCHHHHSSCTTHHHHHTCCCHHHHH-----------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCChhhHHHcCCCcHHHHH-----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8875432 22331 1 333221 2577888889999999988876
No 45
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=57.77 E-value=1e+02 Score=27.38 Aligned_cols=87 Identities=11% Similarity=0.082 Sum_probs=57.5
Q ss_pred eehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHhCCCCCCHHHHhhccchhHHHHHHHHH
Q 048111 112 RVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSEKPRIIRASTII 191 (304)
Q Consensus 112 ~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~~~~e~~~~~~~~~~l~~~~~~i 191 (304)
.+..+.++...++.|-..+..|... ..||.++|+..-..-+|.........-++--..+++..+. ..++-...++.
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~---l~~~g~~lG~a 206 (325)
T 3aqb_B 131 FHQIFSKTILEVCFGEFDQMADRFN-YPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYH---IKQFGHCIGMS 206 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC-CCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHHH
Confidence 4555667777888888888887643 3589999998877766655433222211111245555443 35678888889
Q ss_pred HHHhcCccchh
Q 048111 192 GRLVNDIKSHK 202 (304)
Q Consensus 192 ~rL~NDi~s~~ 202 (304)
.-+.||+..+.
T Consensus 207 fQi~DD~ld~~ 217 (325)
T 3aqb_B 207 YQIIDDILDYT 217 (325)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999988875
No 46
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=53.53 E-value=75 Score=28.04 Aligned_cols=84 Identities=15% Similarity=0.185 Sum_probs=57.4
Q ss_pred ceehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHh-CCCCCCHHHHhhccchhHHHHHHH
Q 048111 111 YRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLG-MDSVVTKEAFDWVSEKPRIIRAST 189 (304)
Q Consensus 111 ~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~~~~e~~~~~~~~~~l~~~~~ 189 (304)
.....+.+....++.+-..+..|......||.++|+..-..-+|.........-+ ++. .++ ...++-+..+
T Consensus 111 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~-~~~-------~l~~~g~~lG 182 (301)
T 2q80_A 111 DAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD-YKE-------DLKPLLNTLG 182 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCS-------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCC-ChH-------HHHHHHHHHH
Confidence 3455577788889999999999987666899999999887766654433222211 121 221 2356778888
Q ss_pred HHHHHhcCccchh
Q 048111 190 IIGRLVNDIKSHK 202 (304)
Q Consensus 190 ~i~rL~NDi~s~~ 202 (304)
+...+.||+..+.
T Consensus 183 ~aFQi~DD~ld~~ 195 (301)
T 2q80_A 183 LFFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhc
Confidence 8888889888764
No 47
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=53.11 E-value=75 Score=28.93 Aligned_cols=105 Identities=10% Similarity=-0.038 Sum_probs=66.1
Q ss_pred eehhhHHHHHHHHHHHHHHHhHhhCCC----CCChHHHHhhhhhhhchh-HHH--HHHHHhCCCCCCHHHHhhccchhHH
Q 048111 112 RVHYAKEEMKILVHGYHDESKWFHNNY----VPTMEEYMRVSLVTSAYS-MLT--AASFLGMDSVVTKEAFDWVSEKPRI 184 (304)
Q Consensus 112 ~~~~~~~~w~~~~~~~~~Ea~w~~~~~----~Ps~eEYl~~~~~s~g~~-~~~--~~~~~~~g~~~~~e~~~~~~~~~~l 184 (304)
.+..+.+.....+.|-+.+..|...+. .+|.++|+..-..-+|.. ... ....+..| ..+++..+. ..++
T Consensus 170 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag-~~~~~~~~~---l~~~ 245 (367)
T 1uby_A 170 LLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVG-IDSKEEHEN---AKAI 245 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHT-CCCHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcC-CccHHHHHH---HHHH
Confidence 355566777788888888888876543 679999998877766654 211 11112223 134554443 3567
Q ss_pred HHHHHHHHHHhcCccchhhh----------hhcCCCchhHHHHHhhc
Q 048111 185 IRASTIIGRLVNDIKSHKFE----------QERGHPASAIECYMKEK 221 (304)
Q Consensus 185 ~~~~~~i~rL~NDi~s~~~E----------~~~G~~~n~V~~ym~e~ 221 (304)
....++..-+.||+..+.-+ ...|+. +.+.++..++
T Consensus 246 g~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~egK~-T~p~l~al~~ 291 (367)
T 1uby_A 246 LLEMGEYFQIQDDYLDCFGDPALTGAVGTDIQDNKC-SWLVVQCLQR 291 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTCSSCCCCCSSSCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCChhhcCCchhhHHcCCc-hHHHHHHHHh
Confidence 88888899999999877532 223443 6666666555
No 48
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=50.64 E-value=1.2e+02 Score=27.69 Aligned_cols=105 Identities=10% Similarity=-0.047 Sum_probs=66.9
Q ss_pred eehhhHHHHHHHHHHHHHHHhHhhCCC----CCChHHHHhhhhhhhchh-HHH--HHHHHhCCCCCCHHHHhhccchhHH
Q 048111 112 RVHYAKEEMKILVHGYHDESKWFHNNY----VPTMEEYMRVSLVTSAYS-MLT--AASFLGMDSVVTKEAFDWVSEKPRI 184 (304)
Q Consensus 112 ~~~~~~~~w~~~~~~~~~Ea~w~~~~~----~Ps~eEYl~~~~~s~g~~-~~~--~~~~~~~g~~~~~e~~~~~~~~~~l 184 (304)
.+..+.+.....+.|-+.+..|...+. .+|.++|+..-..-+|.. ... ....+. +...+++..+. ..++
T Consensus 177 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~l-ag~a~~~~~~~---l~~~ 252 (374)
T 2qis_A 177 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYM-AGIDGEKEHAN---AKKI 252 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHH-TTCCCHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHH-cCCCcHHHHHH---HHHH
Confidence 455566777788888888888866544 389999999887766655 211 111222 22145555443 3567
Q ss_pred HHHHHHHHHHhcCccchhhh----------hhcCCCchhHHHHHhhc
Q 048111 185 IRASTIIGRLVNDIKSHKFE----------QERGHPASAIECYMKEK 221 (304)
Q Consensus 185 ~~~~~~i~rL~NDi~s~~~E----------~~~G~~~n~V~~ym~e~ 221 (304)
....++..-+.||+..+--+ ...|+. +.+.++..+.
T Consensus 253 g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~~gK~-T~p~l~al~~ 298 (374)
T 2qis_A 253 LLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKC-SWLVVQCLQR 298 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHCSCCCTTTTTCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCChhhcCCchhHHHcCCc-cHHHHHHHHh
Confidence 88889999999999877532 223443 6666666555
No 49
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=46.53 E-value=27 Score=30.88 Aligned_cols=108 Identities=16% Similarity=0.077 Sum_probs=62.7
Q ss_pred HHHHHHHHHhHhhCC-CCCChHHHHhhhhhhhchhHHHHHHHHh--CCCCCCHHHHhhccchhHHHHHHHHHHHHhcCcc
Q 048111 123 LVHGYHDESKWFHNN-YVPTMEEYMRVSLVTSAYSMLTAASFLG--MDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIK 199 (304)
Q Consensus 123 ~~~~~~~Ea~w~~~~-~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 199 (304)
++.|-..+..|...+ ..+|.++|+..-..-+|....... ..+ ++ ..+++..+. ..++-...++..-+.||+.
T Consensus 162 ~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~-~~ga~la-g~~~~~~~~---l~~~g~~lG~aFQI~DDiL 236 (293)
T 2j1p_A 162 LVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASA-VLGGIIG-GGSDEEIER---LRKFARCIGLLFQVVDDIL 236 (293)
T ss_dssp HHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHH-HHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHH-HHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 455555555554321 246889998875444444332221 111 12 245555443 3567888899999999998
Q ss_pred chhhhhhcCCCchhHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHH
Q 048111 200 SHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKKVGDAWKDINE 250 (304)
Q Consensus 200 s~~~E~~~G~~~n~V~~ym~e~~~~g~~~s~eeA~~~i~~~i~~~~k~ln~ 250 (304)
.+..+. -.+...+ ...|.|.+.+.+.++++.+.|..
T Consensus 237 D~~~~~----K~T~p~l-----------~gle~a~~~a~~~~~~A~~~L~~ 272 (293)
T 2j1p_A 237 DVTKSS----KLTYPKL-----------MGLEKSREFAEKLNTEARDQLLG 272 (293)
T ss_dssp HHHC------CCCHHHH-----------HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HccCCc----cccHHHH-----------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 876443 1233322 23677888888999988877764
No 50
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=45.96 E-value=62 Score=29.11 Aligned_cols=86 Identities=17% Similarity=0.104 Sum_probs=55.9
Q ss_pred eehhhHHHHHHHHHHHHHHHhHhhCC--CCCChHHHHhhhhhhhchhHHHHHHH--HhCCCCCCHHHHhhccchhHHHHH
Q 048111 112 RVHYAKEEMKILVHGYHDESKWFHNN--YVPTMEEYMRVSLVTSAYSMLTAASF--LGMDSVVTKEAFDWVSEKPRIIRA 187 (304)
Q Consensus 112 ~~~~~~~~w~~~~~~~~~Ea~w~~~~--~~Ps~eEYl~~~~~s~g~~~~~~~~~--~~~g~~~~~e~~~~~~~~~~l~~~ 187 (304)
.+..+.+....++.+-..+..|.... ..||.++|+..-..-+|......... ...|. +++ . ....++-+.
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~--~~~-~---~~l~~~g~~ 205 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPS--SHH-G---HSLVPFINL 205 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCC--cHH-H---HHHHHHHHH
Confidence 34456667778888888888887655 57899999998777666543332211 11122 222 1 234578888
Q ss_pred HHHHHHHhcCccchhh
Q 048111 188 STIIGRLVNDIKSHKF 203 (304)
Q Consensus 188 ~~~i~rL~NDi~s~~~ 203 (304)
.++..-+.||+..+.-
T Consensus 206 lG~aFQi~DD~ld~~~ 221 (340)
T 2e8v_A 206 LGIIYQIRDDYLNLKD 221 (340)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999987753
No 51
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=45.43 E-value=1.6e+02 Score=26.04 Aligned_cols=100 Identities=9% Similarity=0.019 Sum_probs=62.2
Q ss_pred eehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHH--HhCCCCCCHHHHhhccchhHHHHHHH
Q 048111 112 RVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASF--LGMDSVVTKEAFDWVSEKPRIIRAST 189 (304)
Q Consensus 112 ~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~--~~~g~~~~~e~~~~~~~~~~l~~~~~ 189 (304)
....+.++...++.+-..+..|.. +..||.++|+..-..-+|......... ...|.. .+. ..++-+..+
T Consensus 123 ~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~--~~~------l~~~g~~lG 193 (315)
T 3tc1_A 123 IAQALSNAVLRLSRGEIEDVFVGE-CFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD--AKI------YADFGLNFG 193 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-SCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC--HHH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC--HHH------HHHHHHHHH
Confidence 355566777788888888888864 346899999987666555543322211 112332 222 346778888
Q ss_pred HHHHHhcCccchhhh-----------hhcCCCchhHHHHHhhc
Q 048111 190 IIGRLVNDIKSHKFE-----------QERGHPASAIECYMKEK 221 (304)
Q Consensus 190 ~i~rL~NDi~s~~~E-----------~~~G~~~n~V~~ym~e~ 221 (304)
+..-+.||+..+--+ ...|+. +...+|..++
T Consensus 194 ~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~-T~p~i~al~~ 235 (315)
T 3tc1_A 194 MAFQIIDDLLDITQDAKTLGKPNFSDFKEGKT-TLPYLLLYEK 235 (315)
T ss_dssp HHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCC-CHHHHHHHTT
T ss_pred HHHHHHHHHhcccCCHHHhCCChhhHHHcCCh-hHHHHHHHHh
Confidence 888899988876432 223433 6666666655
No 52
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=42.61 E-value=2e+02 Score=26.31 Aligned_cols=61 Identities=11% Similarity=0.018 Sum_probs=36.6
Q ss_pred CCChHHHHhhhhhhhchhH---HHHHHHHhCCCCCCHHHHhhccchhHHHHHHHHHHHHhcCccchh
Q 048111 139 VPTMEEYMRVSLVTSAYSM---LTAASFLGMDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIKSHK 202 (304)
Q Consensus 139 ~Ps~eEYl~~~~~s~g~~~---~~~~~~~~~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi~s~~ 202 (304)
.+|+++|++.-..-+|... .+....+..|...+++..+. ..++-...++..-+.||+..+-
T Consensus 229 ~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~~~~~---l~~~g~~lG~aFQI~DDiLD~~ 292 (395)
T 3mav_A 229 MINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKK---IEDISMLMGEYFQIHDDYLDIF 292 (395)
T ss_dssp GCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCTHHHH---HHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhHHHHH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 4689999988766555431 12222233344444444333 3457777888888899987764
No 53
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=38.82 E-value=97 Score=27.17 Aligned_cols=116 Identities=10% Similarity=0.013 Sum_probs=67.6
Q ss_pred ehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHH-hCCCCCCHHHHhhccchhHHHHHHHHH
Q 048111 113 VHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFL-GMDSVVTKEAFDWVSEKPRIIRASTII 191 (304)
Q Consensus 113 ~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~-~~g~~~~~e~~~~~~~~~~l~~~~~~i 191 (304)
+..+.++...++.|-..+..+ .++|++.-..-+|......+..- .++ .+++..+. ..++-+..++.
T Consensus 137 ~~~~~~~~~~~~~GQ~~dl~~--------~~~y~~~i~~KTa~L~~~a~~~ga~la--~~~~~~~~---l~~~g~~lG~a 203 (289)
T 2azj_A 137 LNTSIELWKDTSVGALRDMYD--------NSDYIRTIELKTGSLFKLSTVLSAYAS--KHYNTKQQ---MLDVGKYLGII 203 (289)
T ss_dssp HHHHHHHHHHHHHHHHHTTTT--------TSCHHHHHHHHTHHHHHHHHHHHHHHT--TCGGGHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHcchHHHHHHHHHHHHHHc--CCHHHHHH---HHHHHHHHHHH
Confidence 445555666666665555443 67888876665555533222111 123 44444333 35677888888
Q ss_pred HHHhcCccchhhhh----hcCCCchhHHHHHhhcccCCcccCHHHH-HHHHHHHHHHHHHHHHH
Q 048111 192 GRLVNDIKSHKFEQ----ERGHPASAIECYMKEKEREGVSVTQQEV-HEELYKKVGDAWKDINE 250 (304)
Q Consensus 192 ~rL~NDi~s~~~E~----~~G~~~n~V~~ym~e~~~~g~~~s~eeA-~~~i~~~i~~~~k~ln~ 250 (304)
.-+.||+..+.-+. ..|. .+...+| . . ...++| ...+.+.++++.+.|..
T Consensus 204 FQi~DDilD~~~~~K~dl~~gk-~Tlp~l~-~-~------~g~~~a~~~~a~~~~~~A~~~L~~ 258 (289)
T 2azj_A 204 YQVIDDFVDYKTKKVEEIDGSA-KQLFKYY-R-E------GKLEEYVRSVYLEYKQKYDELISN 258 (289)
T ss_dssp HHHHHHHHHHTTSCTTTCCTTG-GGGHHHH-T-T------TCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhhcCCCChhhhcCc-ccHHHHH-H-c------CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999988774321 2232 4666666 3 3 345677 45677777888777654
No 54
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=38.40 E-value=50 Score=28.81 Aligned_cols=69 Identities=10% Similarity=0.020 Sum_probs=41.9
Q ss_pred HHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHh--CCCCCCHHHHhhccchhHHHHHHHHHHHHhcCc
Q 048111 123 LVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLG--MDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDI 198 (304)
Q Consensus 123 ~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi 198 (304)
++.+-..+..|.. ..||.++|+..-..-+|....... ..+ ++ ..+++..+. ..++-+..++..-+.||+
T Consensus 151 ~~~GQ~lDl~~~~--~~~t~~~y~~~i~~KTa~L~~~a~-~lGaila-ga~~~~~~~---l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 151 MISGLHREEEIVD--GNTSLDFIEYVCKKKYGEMHACGA-ACGAILG-GAAEEEIQK---LRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp HHHHHHHHTTCCT--TSSCHHHHHHHHHHHTHHHHHHHH-HHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHhh
Confidence 4555555556543 378999999865555554433222 222 12 245555443 356788889999999996
No 55
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=31.35 E-value=41 Score=23.36 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.6
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHH
Q 048111 225 GVSVTQQEVHEELYKKVGDAWKDI 248 (304)
Q Consensus 225 g~~~s~eeA~~~i~~~i~~~~k~l 248 (304)
| ++.+||+..+.+.+++++.++
T Consensus 7 G--l~v~eA~~~l~~~l~~~~~~~ 28 (82)
T 3fau_A 7 G--LHVDEALEHLMRVLEKKTEEF 28 (82)
T ss_dssp T--SCHHHHHHHHHHHHHHHHHHH
T ss_pred C--CcHHHHHHHHHHHHHHHHHHh
Confidence 8 999999999999999988643
No 56
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=31.15 E-value=1e+02 Score=27.83 Aligned_cols=105 Identities=10% Similarity=-0.011 Sum_probs=64.7
Q ss_pred eehhhHHHHHHHHHHHHHHHhHh-----------hCCC----CCChHHHHhhhhhhhchh-HHHH--HHHHhCCCCCCHH
Q 048111 112 RVHYAKEEMKILVHGYHDESKWF-----------HNNY----VPTMEEYMRVSLVTSAYS-MLTA--ASFLGMDSVVTKE 173 (304)
Q Consensus 112 ~~~~~~~~w~~~~~~~~~Ea~w~-----------~~~~----~Ps~eEYl~~~~~s~g~~-~~~~--~~~~~~g~~~~~e 173 (304)
.+..+.+.....+.|-..+..|. ..+. .+|.++|+..-..-+|.. .... ...+..| ..+++
T Consensus 152 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag-~~~~~ 230 (362)
T 1yhl_A 152 LLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSE-AAASV 230 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-CGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcC-CCCHH
Confidence 45566677788888888888887 3223 489999999887766655 2211 1122223 12333
Q ss_pred HHhhccchhHHHHHHHHHHHHhcCccchhhh----------hhcCCCchhHHHHHhhc
Q 048111 174 AFDWVSEKPRIIRASTIIGRLVNDIKSHKFE----------QERGHPASAIECYMKEK 221 (304)
Q Consensus 174 ~~~~~~~~~~l~~~~~~i~rL~NDi~s~~~E----------~~~G~~~n~V~~ym~e~ 221 (304)
..+. ..++....++..-+.||+..+.-+ ...|+. +...+|..++
T Consensus 231 ~~~~---l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~egK~-T~p~l~al~~ 284 (362)
T 1yhl_A 231 EMNL---VERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKC-SWLAVTFLGK 284 (362)
T ss_dssp CHHH---HHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCC-CHHHHHHHTT
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHhccCChHHhCCChhhHhcCCc-hHHHHHHHHh
Confidence 3222 356778888899999999887532 223443 6666666555
No 57
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=29.52 E-value=98 Score=27.24 Aligned_cols=84 Identities=15% Similarity=-0.065 Sum_probs=54.9
Q ss_pred ceehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHH--HhCCCCCCHHHHhhccchhHHHHHH
Q 048111 111 YRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASF--LGMDSVVTKEAFDWVSEKPRIIRAS 188 (304)
Q Consensus 111 ~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~--~~~g~~~~~e~~~~~~~~~~l~~~~ 188 (304)
..+..+.++...++.+-..+..|.... ||.++|+..-..-+|......... ...|..- +. ..++-...
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~--~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~--~~------l~~~g~~l 196 (299)
T 1v4e_A 127 KLRRAFLNVIGKMSEAELIEQLSRYKP--ITKEEYLRIVEGKSGALFGLALQLPALLEGELG--ED------LYNLGVTI 196 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC--HH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHccCCC--CCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH--HH------HHHHHHHH
Confidence 446667777888999999999987654 999999988776666553322211 1113221 22 23567777
Q ss_pred HHHHHHhcCccchhhh
Q 048111 189 TIIGRLVNDIKSHKFE 204 (304)
Q Consensus 189 ~~i~rL~NDi~s~~~E 204 (304)
++..-+.||+..+.-+
T Consensus 197 G~aFQi~DD~lD~~~d 212 (299)
T 1v4e_A 197 GTIYQMFDDIMDFAGM 212 (299)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHccCc
Confidence 8888888888776543
No 58
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=27.33 E-value=53 Score=23.99 Aligned_cols=29 Identities=24% Similarity=0.278 Sum_probs=23.7
Q ss_pred cCCCchhHHHHHhhcccCCcccCHHHHHHHHHHH
Q 048111 207 RGHPASAIECYMKEKEREGVSVTQQEVHEELYKK 240 (304)
Q Consensus 207 ~G~~~n~V~~ym~e~~~~g~~~s~eeA~~~i~~~ 240 (304)
.|..+|+|..+|+-. | +|-.||++.+.+.
T Consensus 64 cg~gGd~i~fv~~~~---~--~sf~eA~~~La~~ 92 (103)
T 1d0q_A 64 CGAGGNAFTFLMDIE---G--IPFVEAAKRLAAK 92 (103)
T ss_dssp TCCEECHHHHHHHHH---T--CCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHh---C--CCHHHHHHHHHHH
Confidence 355579999999888 8 9999999887764
No 59
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=26.40 E-value=3.7e+02 Score=24.41 Aligned_cols=77 Identities=13% Similarity=-0.026 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHHHHHHh--CCCCCCHHHHhhccchhHHHHHHHHHHHHhcCc
Q 048111 121 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLG--MDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDI 198 (304)
Q Consensus 121 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi 198 (304)
...+.+-..+..|... ..||.++|+..-..-+|...+...+..+ ++ ..+++..+. ...+-+..++..-+.||+
T Consensus 185 ~~~~~GQ~lDl~~~~~-~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~la-ga~~~~~~~---l~~~G~~lG~AFQI~DDi 259 (380)
T 3lk5_A 185 TEVIGGQLLDIYLESH-ANESVELADSVNRFKTAAYTIARPLHLGASIA-GGSPQLIDA---LLHYGHDIGIAFQLRDDL 259 (380)
T ss_dssp HHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-CCCCHHHHHHHHHhhchHHHHHHHHHHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4566777777777654 3679999998876666654211111111 11 234554443 356788888999999998
Q ss_pred cchh
Q 048111 199 KSHK 202 (304)
Q Consensus 199 ~s~~ 202 (304)
..+-
T Consensus 260 Ld~~ 263 (380)
T 3lk5_A 260 LGVF 263 (380)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 8774
No 60
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=24.80 E-value=3.9e+02 Score=24.17 Aligned_cols=104 Identities=12% Similarity=-0.012 Sum_probs=62.0
Q ss_pred eehhhHHHHHHHHHHHHHHHhHhhCCCCCCh-HHHHhhhhhhhchh-H--HHHHHHHhCCCCCCHHH--HhhccchhHHH
Q 048111 112 RVHYAKEEMKILVHGYHDESKWFHNNYVPTM-EEYMRVSLVTSAYS-M--LTAASFLGMDSVVTKEA--FDWVSEKPRII 185 (304)
Q Consensus 112 ~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~-eEYl~~~~~s~g~~-~--~~~~~~~~~g~~~~~e~--~~~~~~~~~l~ 185 (304)
.+..+.++....+.|-..+..|...+..+++ ++|+..-..-+|.. . .+....+..|. +++. . ....++.
T Consensus 169 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~--~~~~~~~---~~l~~~g 243 (368)
T 2her_A 169 IQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEI--QVSSAQL---NLIEAIL 243 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCC--CCCCSST---TTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCC--ChhHHHH---HHHHHHH
Confidence 3556667777888888888888765534555 99998876666554 1 11121222342 2222 2 2245678
Q ss_pred HHHHHHHHHhcCccchh------hhhhcCCCchhHHHHHhhc
Q 048111 186 RASTIIGRLVNDIKSHK------FEQERGHPASAIECYMKEK 221 (304)
Q Consensus 186 ~~~~~i~rL~NDi~s~~------~E~~~G~~~n~V~~ym~e~ 221 (304)
...++..-+.||+..+- .+...|+. +...++..++
T Consensus 244 ~~lG~aFQI~DD~LD~~~~GK~g~Dl~egK~-T~pvi~al~~ 284 (368)
T 2her_A 244 YKLGEFYQVHNDVSDYLFNDSNADDICRFKL-TWPLQKSFEI 284 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSSCTTTTTCC-CHHHHSSTTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCChHhCCcc-cHHHHHHHHh
Confidence 88888999999988774 22333443 4554555444
No 61
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=23.91 E-value=58 Score=29.71 Aligned_cols=86 Identities=13% Similarity=0.086 Sum_probs=51.6
Q ss_pred hhhHHHHHHHHHHHHHHHhHhhCCCCC-ChHHHHhhhhhhhchhH---HHHHHHHhCCCCCCHHHHhhccchhHHHHHHH
Q 048111 114 HYAKEEMKILVHGYHDESKWFHNNYVP-TMEEYMRVSLVTSAYSM---LTAASFLGMDSVVTKEAFDWVSEKPRIIRAST 189 (304)
Q Consensus 114 ~~~~~~w~~~~~~~~~Ea~w~~~~~~P-s~eEYl~~~~~s~g~~~---~~~~~~~~~g~~~~~e~~~~~~~~~~l~~~~~ 189 (304)
..+.++....+.+-..+-.|...+..+ +.|+|++.-..-.|... .+....+..|...+++..+ ...++....+
T Consensus 171 ~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~---~l~~~g~~lG 247 (368)
T 2q58_A 171 KIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLN---LIEAILYKLG 247 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTT---THHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHH---HHHHHHHHHH
Confidence 344455556666777777777655554 78889987555444332 2222233334444444333 2456788888
Q ss_pred HHHHHhcCccchh
Q 048111 190 IIGRLVNDIKSHK 202 (304)
Q Consensus 190 ~i~rL~NDi~s~~ 202 (304)
+..-+.||+..+-
T Consensus 248 ~aFQI~DDiLD~~ 260 (368)
T 2q58_A 248 EFYQVHNDVSDYL 260 (368)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc
Confidence 9999999988764
No 62
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=22.10 E-value=77 Score=22.20 Aligned_cols=21 Identities=24% Similarity=0.193 Sum_probs=18.9
Q ss_pred CcccCHHHHHHHHHHHHHHHHHH
Q 048111 225 GVSVTQQEVHEELYKKVGDAWKD 247 (304)
Q Consensus 225 g~~~s~eeA~~~i~~~i~~~~k~ 247 (304)
| ++.+||...+.+.++++...
T Consensus 11 G--~~~~eA~~~l~~fl~~a~~~ 31 (83)
T 2zqe_A 11 G--LTVAEALLEVDQALEEARAL 31 (83)
T ss_dssp T--CCHHHHHHHHHHHHHHHHHT
T ss_pred C--CCHHHHHHHHHHHHHHHHHC
Confidence 7 99999999999999999843
Done!