BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048112
(94 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PHU|A Chain A, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus
pdb|3PHU|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus
Length = 219
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 44 IIPVSFLNHPSFQ-----ELLTKAGEDFGYYHPMGGLTIPCRKDAFINLTSRLNWS 94
+I ++++P F E++ + G+ +YH + LT+P + D + RL S
Sbjct: 14 VIAGQYVSNPRFNISDYFEIVRQPGDGNXFYHSIAELTMPNKTDHSYHYIKRLTES 69
>pdb|3PSE|A Chain A, Structure Of A Viral Otu Domain Protease Bound To
Interferon- Stimulated Gene 15 (Isg15)
Length = 171
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 44 IIPVSFLNHPSFQ-----ELLTKAGEDFGYYHPMGGLTIPCRKDAFINLTSRLNWS 94
+I ++++P F E++ + G+ +YH + LT+P + D + RL S
Sbjct: 14 VIAGQYVSNPRFNISDYFEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTES 69
>pdb|3PHW|A Chain A, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|C Chain C, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|E Chain E, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|G Chain G, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHX|A Chain A, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Isg15
Length = 185
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 44 IIPVSFLNHPSFQ-----ELLTKAGEDFGYYHPMGGLTIPCRKDAFINLTSRLNWS 94
+I ++++P F E++ + G+ +YH + LT+P + D + RL S
Sbjct: 14 VIAGQYVSNPRFNISDYFEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTES 69
>pdb|3ZNH|A Chain A, Crimean Congo Hemorrhagic Fever Virus Otu Domain In
Complex With Ubiquitin-propargyl
Length = 183
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 44 IIPVSFLNHPSFQ-----ELLTKAGEDFGYYHPMGGLTIPCRKDAFINLTSRLNWS 94
+I ++++P F E++ + G+ +YH + LT+P + D + RL S
Sbjct: 12 VIAGQYVSNPRFNISDYFEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTES 67
>pdb|3PRP|A Chain A, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PRP|C Chain C, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
Length = 178
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 44 IIPVSFLNHPSFQ-----ELLTKAGEDFGYYHPMGGLTIPCRKDAFINLTSRLNWS 94
+I ++++P F E++ + G+ +YH + LT+P + D + RL S
Sbjct: 12 VIAGQYVSNPRFNISDYFEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTES 67
>pdb|1X1H|A Chain A, Crystal Structure Of Xanthan Lyase (N194a)
pdb|1X1I|A Chain A, Crystal Structure Of Xanthan Lyase (N194a) Complexed With
A Product
pdb|1X1J|A Chain A, Crystal Structure Of Xanthan Lyase (N194a) With A
Substrate
Length = 752
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 60 TKAGEDFGYYHPMGGLTIPCRKDAFINLTSRLN 92
T G D GYY P GG T+ +++A ++N
Sbjct: 554 TADGSDIGYYFP-GGATLQTKREARTGTWKQIN 585
>pdb|1J0M|A Chain A, Crystal Structure Of Bacillus Sp. Gl1 Xanthan Lyase That
Acts On Side Chains Of Xanthan
pdb|1J0N|A Chain A, Crystal Structure Of Bacillus Sp. Gl1 Xanthan Lyase That
Acts On Side Chains Of Xanthan
Length = 752
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 60 TKAGEDFGYYHPMGGLTIPCRKDAFINLTSRLN 92
T G D GYY P GG T+ +++A ++N
Sbjct: 554 TADGSDIGYYFP-GGATLQTKREARTGTWKQIN 585
>pdb|2E24|A Chain A, Crystal Structure Of A Mutant (R612a) Of Xanthan Lyase
Length = 752
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 60 TKAGEDFGYYHPMGGLTIPCRKDAFINLTSRLN 92
T G D GYY P GG T+ +++A ++N
Sbjct: 554 TADGSDIGYYFP-GGATLQTKREARTGTWKQIN 585
>pdb|2E22|A Chain A, Crystal Structure Of Xanthan Lyase In Complex With Mannose
Length = 752
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 60 TKAGEDFGYYHPMGGLTIPCRKDAFINLTSRLN 92
T G D GYY P GG T+ +++A ++N
Sbjct: 554 TADGSDIGYYFP-GGATLQTKREARTGTWKQIN 585
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,388,469
Number of Sequences: 62578
Number of extensions: 77254
Number of successful extensions: 169
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 169
Number of HSP's gapped (non-prelim): 9
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)