Query 048112
Match_columns 94
No_of_seqs 122 out of 645
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 10:46:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048112.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048112hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pzq_A Erythronolide synthase; 63.0 5.4 0.00018 23.7 2.4 16 10-25 36-51 (60)
2 3n5b_B ASR0485 protein; PII, P 62.3 0.87 3E-05 30.8 -1.3 30 31-60 11-40 (112)
3 1und_A Advillin, P92; actin bi 51.2 4.7 0.00016 22.0 0.7 19 48-66 1-19 (37)
4 1y74_B MLIN-2/CASK, peripheral 50.9 4.7 0.00016 22.6 0.7 20 48-67 26-49 (50)
5 2xko_C PIPX, global nitrogen r 43.8 2.5 8.7E-05 27.5 -1.4 13 47-59 4-16 (89)
6 3qli_A Coenzyme A transferase; 36.3 18 0.00062 29.1 2.3 19 50-68 436-454 (455)
7 3ga1_A Nucleus accumbens-assoc 35.2 50 0.0017 20.6 3.9 32 52-91 56-89 (129)
8 2al3_A TUG long isoform; TUG U 33.4 35 0.0012 21.9 2.9 32 42-75 21-52 (90)
9 2vpk_A Myoneurin; transcriptio 33.1 52 0.0018 20.0 3.7 42 42-91 33-79 (116)
10 1r29_A B-cell lymphoma 6 prote 31.3 55 0.0019 20.2 3.6 45 42-91 40-88 (127)
11 3ezo_A Malonyl COA-acyl carrie 30.1 25 0.00087 26.0 2.0 19 51-69 31-49 (318)
12 3pmi_A PWWP domain-containing 29.2 19 0.00066 24.9 1.1 25 43-67 51-78 (134)
13 3m91_B Prokaryotic ubiquitin-l 28.2 22 0.00076 20.2 1.1 17 55-71 23-41 (44)
14 3ohu_A Transcription regulator 28.1 58 0.002 20.0 3.3 34 52-91 55-90 (125)
15 1y6i_A Mg-chelatase cofactor G 27.9 7.8 0.00027 28.9 -1.1 24 33-56 200-229 (233)
16 1yu8_X Villin; alpha helix, 3- 26.8 18 0.0006 22.1 0.5 21 47-67 30-50 (67)
17 1s1g_A Potassium voltage-gated 26.1 42 0.0014 22.0 2.4 50 42-93 23-73 (124)
18 1ujs_A Actin-binding LIM prote 25.2 21 0.00073 22.8 0.7 21 47-67 45-65 (88)
19 2nz0_B Potassium voltage-gated 25.1 44 0.0015 22.5 2.4 50 42-93 45-95 (140)
20 3eh7_A 4-hydroxybutyrate COA-t 25.1 32 0.0011 27.2 1.9 18 50-67 416-434 (434)
21 1qzp_A Dematin; villin headpie 23.3 15 0.00052 22.3 -0.2 21 47-67 31-51 (68)
22 1sf8_A Chaperone protein HTPG; 22.9 33 0.0011 22.8 1.4 11 51-61 75-85 (126)
23 2if5_A Zinc finger and BTB dom 22.1 1.1E+02 0.0039 18.4 3.8 46 42-91 36-84 (120)
24 1zav_U 50S ribosomal protein L 22.0 39 0.0013 17.4 1.3 12 56-67 19-30 (30)
25 2k6m_S Supervillin; SVHP, HP, 21.8 19 0.00066 21.8 0.0 21 47-67 30-50 (67)
26 1z3x_A Putative cytidyltransfe 21.0 6.4 0.00022 29.5 -2.8 23 33-55 208-236 (238)
27 3b84_A Zinc finger and BTB dom 20.4 1.3E+02 0.0046 18.3 3.9 42 42-91 35-79 (119)
No 1
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=63.02 E-value=5.4 Score=23.69 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=12.3
Q ss_pred hHHHHHHHhHHHhhhh
Q 048112 10 NAKHILRQLKLLANQA 25 (94)
Q Consensus 10 ~lk~~lrr~~s~~~~~ 25 (94)
+|..++|||.|....+
T Consensus 36 rlesllrrwnsrrada 51 (60)
T 1pzq_A 36 RLESLLRRWNSRRADA 51 (60)
T ss_dssp HHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhhcccCC
Confidence 7888999999874333
No 2
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=62.31 E-value=0.87 Score=30.82 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=11.2
Q ss_pred ccccCCCCceeEEEEecCCCCchHHHHHHH
Q 048112 31 VSADVPKGHLARLIIPVSFLNHPSFQELLT 60 (94)
Q Consensus 31 ~~~~vpkG~~aRfvVp~~~L~hP~F~~LL~ 60 (94)
.+..||+|-.--=+.+-.|||||.|.-|-.
T Consensus 11 ~~~~~~~~~~~~~ms~E~YLNHPTFGLLyr 40 (112)
T 3n5b_B 11 SSGLVPRGSHMNPENSETYINHPTWGLLYR 40 (112)
T ss_dssp ---------------CCCEEEETTTEEEEE
T ss_pred cCCcccCCccCCCcchhhhccCCccchhee
Confidence 345788886643344556999999965543
No 3
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=51.20 E-value=4.7 Score=22.03 Aligned_cols=19 Identities=16% Similarity=0.427 Sum_probs=17.0
Q ss_pred CCCCchHHHHHHHhhhhhc
Q 048112 48 SFLNHPSFQELLTKAGEDF 66 (94)
Q Consensus 48 ~~L~hP~F~~LL~~aeeEf 66 (94)
.||+.-.|++++.++.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999998
No 4
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=50.93 E-value=4.7 Score=22.59 Aligned_cols=20 Identities=35% Similarity=0.557 Sum_probs=14.9
Q ss_pred CCCCchHHHHHHH----hhhhhcC
Q 048112 48 SFLNHPSFQELLT----KAGEDFG 67 (94)
Q Consensus 48 ~~L~hP~F~~LL~----~aeeEfG 67 (94)
..|+.|-||+||+ -|.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 4578899999997 3666664
No 5
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=43.78 E-value=2.5 Score=27.50 Aligned_cols=13 Identities=46% Similarity=0.876 Sum_probs=9.8
Q ss_pred cCCCCchHHHHHH
Q 048112 47 VSFLNHPSFQELL 59 (94)
Q Consensus 47 ~~~L~hP~F~~LL 59 (94)
-.|||||.|.-|-
T Consensus 4 E~YLNHPtFGlLy 16 (89)
T 2xko_C 4 ENYLNHPTFGLLY 16 (89)
T ss_dssp CCEEEETTTEEEE
T ss_pred cccccCCccchhh
Confidence 4699999986553
No 6
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=36.29 E-value=18 Score=29.08 Aligned_cols=19 Identities=37% Similarity=0.684 Sum_probs=16.7
Q ss_pred CCchHHHHHHHhhhhhcCc
Q 048112 50 LNHPSFQELLTKAGEDFGY 68 (94)
Q Consensus 50 L~hP~F~~LL~~aeeEfG~ 68 (94)
+.||.||+.|.+++++.|+
T Consensus 436 iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 436 LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp TSCHHHHHHHHHHHHHTTC
T ss_pred ccCcchHHHHHHHHHHcCC
Confidence 8999999999988888764
No 7
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=35.16 E-value=50 Score=20.60 Aligned_cols=32 Identities=16% Similarity=0.375 Sum_probs=25.6
Q ss_pred chHHHHHHHhhhhhcCcccCCCceeee--CcHHHHHHHHHhh
Q 048112 52 HPSFQELLTKAGEDFGYYHPMGGLTIP--CRKDAFINLTSRL 91 (94)
Q Consensus 52 hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~F~~vl~~l 91 (94)
-|.|++++... .. ..+.|| .+.+.|+.++..+
T Consensus 56 S~~F~~~f~~~-------~~-~~i~l~~~~~~~~f~~ll~~i 89 (129)
T 3ga1_A 56 SSYFRDLFNNS-------RS-AVVELPAAVQPQSFQQILSFC 89 (129)
T ss_dssp BHHHHHHHHHC-------CC-SEEECCTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHcCC-------CC-CEEEECCCCCHHHHHHHHHHH
Confidence 58999998765 23 579996 8899999998765
No 8
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=33.38 E-value=35 Score=21.86 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=24.1
Q ss_pred EEEEecCCCCchHHHHHHHhhhhhcCcccCCCce
Q 048112 42 RLIIPVSFLNHPSFQELLTKAGEDFGYYHPMGGL 75 (94)
Q Consensus 42 RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L 75 (94)
|+.|++ -..-...++|++|.+.||++.+...|
T Consensus 21 r~~VKv--tp~t~L~~VL~eaC~K~gl~~~~~~L 52 (90)
T 2al3_A 21 RHTVKV--TPSTVLLQVLEDTCRRQDFNPSEYDL 52 (90)
T ss_dssp EEEECC--CTTSBHHHHHHHHHHHTTCCGGGCEE
T ss_pred EEEEEE--CCCCCHHHHHHHHHHHhCCChhhCeE
Confidence 777777 33446788999999999998764444
No 9
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=33.09 E-value=52 Score=19.98 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=29.1
Q ss_pred EEEEecCCC--CchHHHHHHHhhhhhcCcccCCCceeee---CcHHHHHHHHHhh
Q 048112 42 RLIIPVSFL--NHPSFQELLTKAGEDFGYYHPMGGLTIP---CRKDAFINLTSRL 91 (94)
Q Consensus 42 RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~iP---C~~~~F~~vl~~l 91 (94)
+|-++-..| .-|.|++++... . + +.+.|+ .+.+.|+.++..+
T Consensus 33 ~~~aHk~vLaa~S~yF~~~f~~~------~-~-~~i~l~~~~~~~~~f~~ll~~~ 79 (116)
T 2vpk_A 33 QFKAHRNVLASFSEYFGAIYRST------S-E-NNVFLDQSQVKADGFQKLLEFI 79 (116)
T ss_dssp EEEECHHHHHHHCHHHHHHHTTC------C-C-SCEECCTTTCCHHHHHHHHHHH
T ss_pred EEeccHHHHhhcCHHHHHHHcCC------C-C-CeEEeecCCCCHHHHHHHHHHH
Confidence 444444444 458999998754 1 3 568887 6889999998765
No 10
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=31.28 E-value=55 Score=20.21 Aligned_cols=45 Identities=13% Similarity=0.170 Sum_probs=31.6
Q ss_pred EEEEecCCC--CchHHHHHHHhhhhhcCcccCCCceee-e-CcHHHHHHHHHhh
Q 048112 42 RLIIPVSFL--NHPSFQELLTKAGEDFGYYHPMGGLTI-P-CRKDAFINLTSRL 91 (94)
Q Consensus 42 RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~i-P-C~~~~F~~vl~~l 91 (94)
+|-++-..| .-|.|++++...-.| .. ..+.| + .+.+.|+.++..+
T Consensus 40 ~~~aHk~iLaa~S~~F~~~f~~~~~e----~~-~~i~l~~~~~~~~f~~ll~~~ 88 (127)
T 1r29_A 40 QFRAHKTVLMACSGLFYSIFTDQLKR----NL-SVINLDPEINPEGFNILLDFM 88 (127)
T ss_dssp EEEECHHHHHHHCHHHHHHHTSTTTT----TC-SEEECCTTSCHHHHHHHHHHH
T ss_pred EEehHHHHHHHhCHHHHHHhcCCccC----CC-CEEEeCCCCCHHHHHHHHHHH
Confidence 444444444 569999999866555 23 57999 4 6889999998765
No 11
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B}
Probab=30.14 E-value=25 Score=26.00 Aligned_cols=19 Identities=21% Similarity=0.316 Sum_probs=17.6
Q ss_pred CchHHHHHHHhhhhhcCcc
Q 048112 51 NHPSFQELLTKAGEDFGYY 69 (94)
Q Consensus 51 ~hP~F~~LL~~aeeEfG~~ 69 (94)
++|.|++.++++.+.+|++
T Consensus 31 ~~p~fr~~~~~~~~~lg~~ 49 (318)
T 3ezo_A 31 DVAVVRETLDEASDALGQD 49 (318)
T ss_dssp TCHHHHHHHHHHHHHHSSC
T ss_pred hCHHHHHHHHHHHHHhCCC
Confidence 8899999999999999875
No 12
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=29.23 E-value=19 Score=24.86 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=21.4
Q ss_pred EEEecCCCCc---hHHHHHHHhhhhhcC
Q 048112 43 LIIPVSFLNH---PSFQELLTKAGEDFG 67 (94)
Q Consensus 43 fvVp~~~L~h---P~F~~LL~~aeeEfG 67 (94)
|-||+.-|+| ---++|+++|.|.||
T Consensus 51 i~V~LrrLK~fDC~ek~~L~~rAre~Y~ 78 (134)
T 3pmi_A 51 FTVSLKSLKHFDCKEKQTLLNQAREDFN 78 (134)
T ss_dssp EEEEGGGCEETTSTTHHHHHHHHTTTCH
T ss_pred eEeEcccCCCCChHhHHHHHHHHHHHhc
Confidence 6788888877 457999999999998
No 13
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=28.17 E-value=22 Score=20.20 Aligned_cols=17 Identities=29% Similarity=0.683 Sum_probs=6.8
Q ss_pred HHHHHHhhhhhc--CcccC
Q 048112 55 FQELLTKAGEDF--GYYHP 71 (94)
Q Consensus 55 F~~LL~~aeeEf--G~~~~ 71 (94)
+-.+|+.-+||| ||-|+
T Consensus 23 Id~vLE~NAeeFV~~fVQK 41 (44)
T 3m91_B 23 IDDVLEENAEDFVRAYVQK 41 (44)
T ss_dssp HHHHHHHTC----------
T ss_pred HHHHHHHhHHHHHHHHHHc
Confidence 456788888998 88888
No 14
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=28.09 E-value=58 Score=20.03 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=25.4
Q ss_pred chHHHHHHHhhhhhcCcccCCCceeee--CcHHHHHHHHHhh
Q 048112 52 HPSFQELLTKAGEDFGYYHPMGGLTIP--CRKDAFINLTSRL 91 (94)
Q Consensus 52 hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~F~~vl~~l 91 (94)
-|.|++++.....| + ..+.+| .+.+.|+.++..+
T Consensus 55 S~yF~~~f~~~~~e-----~-~~i~l~~~~~~~~f~~~l~~i 90 (125)
T 3ohu_A 55 SEYFWQALVGQTKN-----D-LVVSLPEEVTARGFGPLLQFA 90 (125)
T ss_dssp BHHHHHHHTTCCCS-----S-CEEECCTTCCHHHHHHHHHHH
T ss_pred CHHHHHHhcCCCCC-----C-cEEEeCCCCCHHHHHHHHHhH
Confidence 58899998765433 2 468886 7899999998765
No 15
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=27.94 E-value=7.8 Score=28.91 Aligned_cols=24 Identities=33% Similarity=0.711 Sum_probs=16.3
Q ss_pred ccCCCCcee-----EEE-EecCCCCchHHH
Q 048112 33 ADVPKGHLA-----RLI-IPVSFLNHPSFQ 56 (94)
Q Consensus 33 ~~vpkG~~a-----Rfv-Vp~~~L~hP~F~ 56 (94)
..+|+||+| |=+ |=.++|+||.|.
T Consensus 200 l~AP~GHLP~~~~lrG~~l~~~ll~hpa~~ 229 (233)
T 1y6i_A 200 LSAPQGHLPLLNQLRGVRVAESLYRHPVWS 229 (233)
T ss_dssp TTSCTTCCSCCCCTTCTHHHHHHHTSTHHH
T ss_pred CCCCCCCCCCccccchHHHHHHHHCCcccc
Confidence 468999998 111 445678888874
No 16
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=26.83 E-value=18 Score=22.09 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=18.9
Q ss_pred cCCCCchHHHHHHHhhhhhcC
Q 048112 47 VSFLNHPSFQELLTKAGEDFG 67 (94)
Q Consensus 47 ~~~L~hP~F~~LL~~aeeEfG 67 (94)
-.||+.-.|++++.++.+||-
T Consensus 30 E~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 30 ENHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGGSCHHHHHHHHSSCHHHHH
T ss_pred HhcCCHHHHHHHHCcCHHHHH
Confidence 479999999999999999983
No 17
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=26.10 E-value=42 Score=22.03 Aligned_cols=50 Identities=14% Similarity=0.110 Sum_probs=32.8
Q ss_pred EEEEecCCCC-chHHHHHHHhhhhhcCcccCCCceeeeCcHHHHHHHHHhhcc
Q 048112 42 RLIIPVSFLN-HPSFQELLTKAGEDFGYYHPMGGLTIPCRKDAFINLTSRLNW 93 (94)
Q Consensus 42 RfvVp~~~L~-hP~F~~LL~~aeeEfG~~~~~G~L~iPC~~~~F~~vl~~l~~ 93 (94)
||.+..+-|. +|- .+|..++...-++.+.|.+-|-.+-..|++||..++.
T Consensus 23 ~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~ 73 (124)
T 1s1g_A 23 RFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRT 73 (124)
T ss_dssp EEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHHH
T ss_pred EEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHHhc
Confidence 7777665542 232 2333344444455555889999999999999998753
No 18
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=25.20 E-value=21 Score=22.84 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=19.1
Q ss_pred cCCCCchHHHHHHHhhhhhcC
Q 048112 47 VSFLNHPSFQELLTKAGEDFG 67 (94)
Q Consensus 47 ~~~L~hP~F~~LL~~aeeEfG 67 (94)
-.||+.-.|++++.++.+||-
T Consensus 45 E~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 45 ERHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGGSCTTHHHHHHSSCHHHHT
T ss_pred HhcCCHHHHHHHHCcCHHHHH
Confidence 469999999999999999984
No 19
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=25.12 E-value=44 Score=22.48 Aligned_cols=50 Identities=14% Similarity=0.106 Sum_probs=35.0
Q ss_pred EEEEecCCC-CchHHHHHHHhhhhhcCcccCCCceeeeCcHHHHHHHHHhhcc
Q 048112 42 RLIIPVSFL-NHPSFQELLTKAGEDFGYYHPMGGLTIPCRKDAFINLTSRLNW 93 (94)
Q Consensus 42 RfvVp~~~L-~hP~F~~LL~~aeeEfG~~~~~G~L~iPC~~~~F~~vl~~l~~ 93 (94)
||.+..+-| ++|- .+|..++...-++.+.|.+-|-.|-..|++||..++.
T Consensus 45 ~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR~ 95 (140)
T 2nz0_B 45 RFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRT 95 (140)
T ss_dssp EEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHHH
T ss_pred EEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHhc
Confidence 888877655 3332 2444455444555555889999999999999998753
No 20
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=25.10 E-value=32 Score=27.21 Aligned_cols=18 Identities=50% Similarity=0.887 Sum_probs=13.8
Q ss_pred CCchHHHHHHHh-hhhhcC
Q 048112 50 LNHPSFQELLTK-AGEDFG 67 (94)
Q Consensus 50 L~hP~F~~LL~~-aeeEfG 67 (94)
+.||.||+.|.+ |++.||
T Consensus 416 iAhpdfr~~L~~~a~~~~~ 434 (434)
T 3eh7_A 416 IAHPDFREELTKHLRKRFG 434 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHC
T ss_pred CCCCCcHHHHHHHHHHhhC
Confidence 999999997764 555565
No 21
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=23.28 E-value=15 Score=22.30 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=18.7
Q ss_pred cCCCCchHHHHHHHhhhhhcC
Q 048112 47 VSFLNHPSFQELLTKAGEDFG 67 (94)
Q Consensus 47 ~~~L~hP~F~~LL~~aeeEfG 67 (94)
-.||+.-.|++++.++.+||-
T Consensus 31 E~yLsdedF~~vFgmsr~eF~ 51 (68)
T 1qzp_A 31 ERHLSAEDFSRVFAMSPEEFG 51 (68)
T ss_dssp GGGBCHHHHHHHSSSCHHHHH
T ss_pred HhhCCHHHHHHHHCcCHHHHH
Confidence 469999999999999999983
No 22
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface, exposed amphipathic helix, three stranded beta sheet; 2.60A {Escherichia coli} SCOP: d.271.1.1
Probab=22.90 E-value=33 Score=22.80 Aligned_cols=11 Identities=9% Similarity=0.123 Sum_probs=9.7
Q ss_pred CchHHHHHHHh
Q 048112 51 NHPSFQELLTK 61 (94)
Q Consensus 51 ~hP~F~~LL~~ 61 (94)
+||+++.|++.
T Consensus 75 ~HplIk~L~~~ 85 (126)
T 1sf8_A 75 DHVLVKRAADT 85 (126)
T ss_dssp TSHHHHHHHHC
T ss_pred CCHHHHHHHHh
Confidence 89999999864
No 23
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=22.12 E-value=1.1e+02 Score=18.42 Aligned_cols=46 Identities=17% Similarity=0.121 Sum_probs=28.5
Q ss_pred EEEEecCCC--CchHHHHHHHhhhhhcCcccCCCceeee-CcHHHHHHHHHhh
Q 048112 42 RLIIPVSFL--NHPSFQELLTKAGEDFGYYHPMGGLTIP-CRKDAFINLTSRL 91 (94)
Q Consensus 42 RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~iP-C~~~~F~~vl~~l 91 (94)
+|-++-..| .-|.|++++...-.| ... ..+.++ .+.+.|+.++..+
T Consensus 36 ~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~-~~i~l~~~~~~~f~~ll~~~ 84 (120)
T 2if5_A 36 EFPTHRSVLAACSQYFKKLFTSGAVV---DQQ-NVYEIDFVSAEALTALMDFA 84 (120)
T ss_dssp EEEECHHHHHHHCHHHHHHHHC--------CC-SEEECCSSCHHHHHHHHHHH
T ss_pred EEeHHHHHHHHhCHHHHHHhcCCccc---cCC-ceEEeCCCCHHHHHHHHHHH
Confidence 444444444 368999998754333 122 568888 5888999988765
No 24
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=21.98 E-value=39 Score=17.37 Aligned_cols=12 Identities=42% Similarity=0.758 Sum_probs=9.5
Q ss_pred HHHHHhhhhhcC
Q 048112 56 QELLTKAGEDFG 67 (94)
Q Consensus 56 ~~LL~~aeeEfG 67 (94)
.+|.+.-||+||
T Consensus 19 ~eLvk~lEe~fG 30 (30)
T 1zav_U 19 AELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC
Confidence 577788888887
No 25
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=21.77 E-value=19 Score=21.83 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=19.1
Q ss_pred cCCCCchHHHHHHHhhhhhcC
Q 048112 47 VSFLNHPSFQELLTKAGEDFG 67 (94)
Q Consensus 47 ~~~L~hP~F~~LL~~aeeEfG 67 (94)
-.||+.-.|++++.++.+||-
T Consensus 30 E~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 30 EIYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGGSCHHHHHHHTSSCHHHHT
T ss_pred HhhCCHHHHHHHHCcCHHHHH
Confidence 479999999999999999984
No 26
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=20.99 E-value=6.4 Score=29.48 Aligned_cols=23 Identities=39% Similarity=0.837 Sum_probs=15.4
Q ss_pred ccCCCCcee-----EEE-EecCCCCchHH
Q 048112 33 ADVPKGHLA-----RLI-IPVSFLNHPSF 55 (94)
Q Consensus 33 ~~vpkG~~a-----Rfv-Vp~~~L~hP~F 55 (94)
..+|+||+| |=+ |=.++|+||.|
T Consensus 208 l~AP~GHLP~~~~lrGv~l~~~ll~hpa~ 236 (238)
T 1z3x_A 208 LSAPRGHLPLTNQLRGVQVLNALLNHPAW 236 (238)
T ss_dssp TTSCTTCCSCCCCTTCSHHHHHHHTCGGG
T ss_pred CCCCCCCCCcCcccccHHHHHHHHcCccc
Confidence 468999998 211 34467788876
No 27
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=20.43 E-value=1.3e+02 Score=18.27 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=28.0
Q ss_pred EEEEecCCC--CchHHHHHHHhhhhhcCcccCCCceeee-CcHHHHHHHHHhh
Q 048112 42 RLIIPVSFL--NHPSFQELLTKAGEDFGYYHPMGGLTIP-CRKDAFINLTSRL 91 (94)
Q Consensus 42 RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~iP-C~~~~F~~vl~~l 91 (94)
+|-++-..| .-|.|++++.... + +.+.|| .+.+.|+.++..+
T Consensus 35 ~f~aHk~vLaa~S~yF~~~f~~~~-------~-~~i~l~~~~~~~f~~ll~~i 79 (119)
T 3b84_A 35 VFKAHWSVLACCSHFFQSLYGDGS-------G-GSVVLPAGFAEIFGLLLDFF 79 (119)
T ss_dssp EEEECHHHHHHHCHHHHHHHTTTT-------C-CCEEECGGGHHHHHHHHHHH
T ss_pred EEEeeHHHHhhcCHHHHHHHCCCC-------C-CeEEeCCCCHHHHHHHHHHH
Confidence 344444444 3689999987532 3 578888 4678899988765
Done!