BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048113
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 72 RNKIRIVKSGIVPVLLEVLQCQS-TTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEI 130
+N +R+ +PV++++L S LI+ TV + L+ C N + GAI RLV++
Sbjct: 481 QNAVRLHYG--LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 538
Query: 131 L 131
L
Sbjct: 539 L 539
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 72 RNKIRIVKSGIVPVLLEVLQCQS-TTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEI 130
+N +R+ +PV++++L S LI+ TV + L+ C N + GAI RLV++
Sbjct: 345 QNAVRLHYG--LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 402
Query: 131 L 131
L
Sbjct: 403 L 403
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 11/57 (19%)
Query: 221 IRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWR 277
I A + + E Q ++ A AI+ R + +EGV+ LL+ VDG WR
Sbjct: 127 IFAAINAVSESDAQTRQQAAAIM-----------RQHLNEEGVIQFLLKSFVDGEWR 172
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 11/57 (19%)
Query: 221 IRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWR 277
I A + + E Q ++ A AI+ R + +EGV+ LL+ VDG WR
Sbjct: 127 IFAAINAVSESDAQTRQQAAAIM-----------RQHLNEEGVIQFLLKSFVDGEWR 172
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 15 ETQIQAANELGKLSRRQKHKLVER----GIIAPLISMLCSQDYEAIEXXXXXX-XXXXCG 69
E+Q+QA KL R+K ++ G+I +S L D I+ G
Sbjct: 72 ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG 131
Query: 70 SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAM 105
+ +V G +P + +L + E V A+
Sbjct: 132 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 167
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 15 ETQIQAANELGKLSRRQKHKLVER----GIIAPLISMLCSQDYEAIEXXXXXX-XXXXCG 69
E+Q+QA KL R+K ++ G+I +S L D I+ G
Sbjct: 72 ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG 131
Query: 70 SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAM 105
+ +V G +P + +L + E V A+
Sbjct: 132 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 167
>pdb|3CG6|A Chain A, Crystal Structure Of Gadd45 Gamma
pdb|3CG6|B Chain B, Crystal Structure Of Gadd45 Gamma
Length = 146
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 98 IELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGD 134
I L + LI + C EN ++I G +QRL I+ D
Sbjct: 59 IALQIHFTLIQAFCCENDIDIVRVGDVQRLAAIVGSD 95
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 15 ETQIQAANELGKLSRRQKHKLVER----GIIAPLISMLCSQDYEAIEXXXXXX-XXXXCG 69
E+Q+QA KL R+K ++ G+I +S L D I+ G
Sbjct: 58 ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG 117
Query: 70 SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAM 105
+ +V G +P + +L + E V A+
Sbjct: 118 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 153
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 15 ETQIQAANELGKLSRRQKHKLVER----GIIAPLISMLCSQDYEAIEXXXXXX-XXXXCG 69
E+Q+QA KL R+K ++ G+I +S L D I+ G
Sbjct: 56 ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG 115
Query: 70 SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAM 105
+ +V G +P + +L + E V A+
Sbjct: 116 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 151
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 83 VPVLLEVLQCQS-TTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEIL 131
+PV++++L S LI+ TV + L+ C N + GAI RLV++L
Sbjct: 360 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 409
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 83 VPVLLEVLQCQS-TTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEIL 131
+PV++++L S LI+ TV + L+ C N + GAI RLV++L
Sbjct: 358 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 407
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 15 ETQIQAANELGKLSRRQKHKLVER----GIIAPLISMLCSQDYEAIEXXXXXX-XXXXCG 69
E+Q+QA KL R+K ++ G+I +S L D I+ G
Sbjct: 72 ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG 131
Query: 70 SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAM 105
+ +V G +P + +L + E V A+
Sbjct: 132 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 167
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 83 VPVLLEVLQCQS-TTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEIL 131
+PV++++L S LI+ TV + L+ C N + GAI RLV++L
Sbjct: 361 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 410
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 83 VPVLLEVLQCQS-TTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEIL 131
+PV++++L S LI+ TV + L+ C N + GAI RLV++L
Sbjct: 299 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 348
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 83 VPVLLEVLQCQS-TTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEIL 131
+PV++++L S LI+ TV + L+ C N + GAI RLV++L
Sbjct: 359 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 408
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 83 VPVLLEVLQCQS-TTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEIL 131
+PV++++L S LI+ TV + L+ C N + GAI RLV++L
Sbjct: 359 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 408
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 83 VPVLLEVLQCQS-TTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEIL 131
+PV++++L S LI+ TV + L+ C N + GAI RLV++L
Sbjct: 355 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 404
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 83 VPVLLEVLQCQS-TTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEIL 131
+PV++++L S LI+ TV + L+ C N + GAI RLV++L
Sbjct: 342 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 391
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 83 VPVLLEVLQCQS-TTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEIL 131
+PV++++L S LI+ TV + L+ C N + GAI RLV++L
Sbjct: 342 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 391
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 83 VPVLLEVLQCQS-TTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEIL 131
+PV++++L S LI+ TV + L+ C N + GAI RLV++L
Sbjct: 346 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 395
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 83 VPVLLEVLQCQS-TTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEIL 131
+PV++++L S LI+ TV + L+ C N + GAI RLV++L
Sbjct: 344 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 393
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 83 VPVLLEVLQCQS-TTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEIL 131
+PV++++L S LI+ TV + L+ C N + GAI RLV++L
Sbjct: 355 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 404
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 83 VPVLLEVLQCQS-TTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEIL 131
+PV++++L S LI+ TV + L+ C N + GAI RLV++L
Sbjct: 357 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 406
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 15 ETQIQAANELGKLSRRQKHKLVER----GIIAPLISMLCSQDYEAIEXXXXXX-XXXXCG 69
E+Q+QA KL R+K ++ G+I +S L D I+ G
Sbjct: 28 ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG 87
Query: 70 SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAM 105
+ +V G +P + +L + E V A+
Sbjct: 88 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 123
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 15 ETQIQAANELGKLSRRQKHKLVER----GIIAPLISMLCSQDYEAIEXXXXXX-XXXXCG 69
E+Q+QA KL R+K ++ G+I +S L D I+ G
Sbjct: 22 ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG 81
Query: 70 SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAM 105
+ +V G +P + +L + E V A+
Sbjct: 82 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 117
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 15 ETQIQAANELGKLSRRQKHKLVER----GIIAPLISMLCSQDYEAIEX-XXXXXXXXXCG 69
E+Q+QA KL R+K ++ G+I +S L D I+ G
Sbjct: 17 ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG 76
Query: 70 SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAM 105
+ +V G +P + +L + E V A+
Sbjct: 77 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 112
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 15 ETQIQAANELGKLSRRQKHKLVER----GIIAPLISMLCSQDYEAIEX-XXXXXXXXXCG 69
E+Q+QA KL R+K ++ G+I +S L D I+ G
Sbjct: 22 ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG 81
Query: 70 SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAM 105
+ +V G +P + +L + E V A+
Sbjct: 82 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 117
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 15 ETQIQAANELGKLSRRQKHKLVER----GIIAPLISMLCSQDYEAIEXXXXXX-XXXXCG 69
E+Q+QA KL R+K ++ G+I +S L D I+ G
Sbjct: 48 ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG 107
Query: 70 SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAM 105
+ +V G +P + +L + E V A+
Sbjct: 108 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 143
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 15 ETQIQAANELGKLSRRQKHKLVER----GIIAPLISMLCSQDYEAIEX-XXXXXXXXXCG 69
E+Q+QA KL R+K ++ G+I +S L D I+ G
Sbjct: 21 ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG 80
Query: 70 SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAM 105
+ +V G +P + +L + E V A+
Sbjct: 81 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 116
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 15 ETQIQAANELGKLSRRQKHKLVER----GIIAPLISMLCSQDYEAIEX-XXXXXXXXXCG 69
E+Q+QA KL R+K ++ G+I +S L D I+ G
Sbjct: 17 ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG 76
Query: 70 SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAM 105
+ +V G +P + +L + E V A+
Sbjct: 77 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 112
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 15 ETQIQAANELGKLSRRQKHKLVER----GIIAPLISMLCSQDYEAIEX-XXXXXXXXXCG 69
E+Q+QA KL R+K ++ G+I +S L D I+ G
Sbjct: 22 ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG 81
Query: 70 SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAM 105
+ +V G +P + +L + E V A+
Sbjct: 82 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 117
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 15 ETQIQAANELGKLSRRQKHKLVER----GIIAPLISMLCSQDYEAIEX-XXXXXXXXXCG 69
E+Q+QA KL R+K ++ G+I +S L D I+ G
Sbjct: 21 ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG 80
Query: 70 SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAM 105
+ +V G +P + +L + E V A+
Sbjct: 81 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 116
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 15 ETQIQAANELGKLSRRQKHKLVER----GIIAPLISMLCSQDYEAIEXXXXXX-XXXXCG 69
E+Q+QA KL R+K ++ G+I +S L D I+ G
Sbjct: 91 ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG 150
Query: 70 SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAM 105
+ +V G +P + +L + E V A+
Sbjct: 151 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 186
>pdb|1BBH|A Chain A, Atomic Structure Of A Cytochrome C' With An Unusual
Ligand- Controlled Dimer Dissociation At 1.8 Angstroms
Resolution
pdb|1BBH|B Chain B, Atomic Structure Of A Cytochrome C' With An Unusual
Ligand- Controlled Dimer Dissociation At 1.8 Angstroms
Resolution
Length = 131
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRS 256
GA L E G + + A + CKSC +KYR+
Sbjct: 93 GAANTLAEVAATGEAEAVKTAFGDVGAACKSCHEKYRA 130
>pdb|2O78|A Chain A, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|B Chain B, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|C Chain C, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|D Chain D, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|E Chain E, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|F Chain F, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|G Chain G, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|H Chain H, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O7E|A Chain A, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|B Chain B, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|C Chain C, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|D Chain D, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|E Chain E, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|F Chain F, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|G Chain G, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|H Chain H, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7F|A Chain A, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|B Chain B, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|C Chain C, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|D Chain D, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|E Chain E, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|F Chain F, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|G Chain G, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|H Chain H, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
Length = 521
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 14/76 (18%)
Query: 73 NKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSS--CLENKLEIASSGAIQRLVEI 130
N + + SG+ PVL + T A ++L+ + AS G I RL+++
Sbjct: 85 NLVHFLASGVGPVL------------DWTTARAMVLARLVSIAQGASGASEGTIARLIDL 132
Query: 131 LNGDLADDDNSYGRIS 146
LN +LA S G +
Sbjct: 133 LNSELAPAVPSRGTVG 148
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
Query: 15 ETQIQAANELGKLSRRQKHKLVER----GIIAPLISMLCSQDYEAIEXXXXXX-XXXXCG 69
E Q+QA KL R+K ++ G+I +S L D I+ G
Sbjct: 23 ENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASG 82
Query: 70 SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAM 105
+ +V G +P + +L + E V A+
Sbjct: 83 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 118
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/72 (19%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 28 SRRQKHKLVERGIIAPLISMLCSQDYEAIEXXXXXXXXXXCGSERNKIR-IVKSGIVPVL 86
++ Q ++ GII PL+++L + +++ + G ++I+ +V G + L
Sbjct: 322 NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPL 381
Query: 87 LEVLQCQSTTLI 98
++L C ++
Sbjct: 382 CDLLICPDIRIV 393
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,702,248
Number of Sequences: 62578
Number of extensions: 243876
Number of successful extensions: 828
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 767
Number of HSP's gapped (non-prelim): 102
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)