Query 048113
Match_columns 339
No_of_seqs 186 out of 1716
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 06:22:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048113.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048113hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 1.4E-31 3.1E-36 278.2 34.2 316 2-333 406-763 (2102)
2 PLN03200 cellulose synthase-in 100.0 1.8E-30 3.9E-35 270.1 31.9 318 2-334 364-723 (2102)
3 KOG0166 Karyopherin (importin) 100.0 2.4E-30 5.3E-35 237.9 26.4 315 3-332 112-434 (514)
4 KOG4224 Armadillo repeat prote 100.0 4.4E-31 9.5E-36 228.8 18.8 311 5-334 131-446 (550)
5 KOG4224 Armadillo repeat prote 100.0 4.8E-29 1E-33 216.2 21.6 275 3-293 170-448 (550)
6 KOG0166 Karyopherin (importin) 100.0 3.8E-28 8.2E-33 223.5 26.5 309 2-326 68-385 (514)
7 COG5064 SRP1 Karyopherin (impo 100.0 2.1E-27 4.6E-32 204.4 18.1 314 2-334 116-443 (526)
8 COG5064 SRP1 Karyopherin (impo 99.9 7.3E-25 1.6E-29 188.9 18.5 277 2-294 159-446 (526)
9 PF05804 KAP: Kinesin-associat 99.9 7.3E-21 1.6E-25 184.4 30.4 309 2-329 292-644 (708)
10 KOG1048 Neural adherens juncti 99.9 1.8E-21 4E-26 184.8 23.1 308 3-315 236-616 (717)
11 PF05804 KAP: Kinesin-associat 99.9 6.2E-21 1.3E-25 184.9 26.0 252 53-330 263-516 (708)
12 KOG2122 Beta-catenin-binding p 99.9 5.1E-21 1.1E-25 189.0 18.7 264 17-294 315-604 (2195)
13 KOG4199 Uncharacterized conser 99.8 7.4E-18 1.6E-22 145.6 25.6 305 11-331 118-441 (461)
14 KOG4199 Uncharacterized conser 99.8 6.9E-16 1.5E-20 133.5 26.0 279 4-293 149-446 (461)
15 PF04826 Arm_2: Armadillo-like 99.7 2.4E-15 5.3E-20 130.3 21.4 196 36-249 9-206 (254)
16 KOG1048 Neural adherens juncti 99.7 9.1E-16 2E-20 146.3 18.5 277 40-329 234-590 (717)
17 KOG4500 Rho/Rac GTPase guanine 99.7 8.1E-15 1.8E-19 130.6 22.7 324 3-335 90-476 (604)
18 PF04826 Arm_2: Armadillo-like 99.7 4.5E-15 9.8E-20 128.6 20.5 185 3-205 15-204 (254)
19 PF10508 Proteasom_PSMB: Prote 99.7 9.4E-14 2E-18 133.1 30.3 274 3-293 80-368 (503)
20 PF10508 Proteasom_PSMB: Prote 99.6 3E-13 6.5E-18 129.7 29.1 310 3-334 41-366 (503)
21 KOG2122 Beta-catenin-binding p 99.6 2.7E-13 5.9E-18 135.3 19.4 316 4-333 239-600 (2195)
22 KOG1222 Kinesin associated pro 99.5 6.7E-12 1.5E-16 113.7 24.5 285 2-293 306-665 (791)
23 KOG4500 Rho/Rac GTPase guanine 99.5 7.1E-12 1.5E-16 112.1 22.6 311 5-322 47-419 (604)
24 cd00020 ARM Armadillo/beta-cat 99.5 4.6E-13 1E-17 103.4 13.4 118 34-162 2-120 (120)
25 KOG1222 Kinesin associated pro 99.5 6.3E-12 1.4E-16 113.9 19.4 238 54-318 278-517 (791)
26 PRK09687 putative lyase; Provi 99.4 4.8E-11 1E-15 105.7 22.0 224 3-291 26-250 (280)
27 cd00256 VATPase_H VATPase_H, r 99.4 8.8E-11 1.9E-15 108.4 22.9 275 4-291 105-425 (429)
28 cd00020 ARM Armadillo/beta-cat 99.4 1.7E-11 3.7E-16 94.5 14.8 117 169-290 2-119 (120)
29 PRK09687 putative lyase; Provi 99.4 6E-11 1.3E-15 105.1 17.6 220 3-287 57-278 (280)
30 KOG2160 Armadillo/beta-catenin 99.3 1.3E-09 2.7E-14 96.5 22.1 180 11-201 94-278 (342)
31 PF03224 V-ATPase_H_N: V-ATPas 99.3 5.3E-10 1.1E-14 101.2 20.0 250 21-279 31-302 (312)
32 PRK13800 putative oxidoreducta 99.3 1.3E-09 2.8E-14 111.8 25.2 256 3-331 624-896 (897)
33 KOG0946 ER-Golgi vesicle-tethe 99.3 5E-09 1.1E-13 100.2 26.4 279 3-294 25-349 (970)
34 PF03224 V-ATPase_H_N: V-ATPas 99.2 1.1E-09 2.4E-14 99.1 18.1 220 4-237 59-303 (312)
35 KOG2160 Armadillo/beta-catenin 99.2 2E-09 4.2E-14 95.3 18.3 187 50-248 94-282 (342)
36 cd00256 VATPase_H VATPase_H, r 99.2 2E-08 4.4E-13 92.9 24.2 316 4-333 57-424 (429)
37 KOG2759 Vacuolar H+-ATPase V1 99.2 1.1E-08 2.4E-13 91.9 21.1 277 3-291 117-438 (442)
38 PRK13800 putative oxidoreducta 99.1 1.8E-08 4E-13 103.4 24.5 226 3-288 655-896 (897)
39 PF01602 Adaptin_N: Adaptin N 99.1 4.8E-08 1E-12 95.1 24.0 284 5-334 84-369 (526)
40 KOG0168 Putative ubiquitin fus 99.1 3E-08 6.5E-13 95.7 21.5 251 4-273 171-437 (1051)
41 KOG2973 Uncharacterized conser 99.0 6E-08 1.3E-12 83.9 20.0 273 2-293 5-317 (353)
42 KOG1293 Proteins containing ar 99.0 8E-08 1.7E-12 90.7 22.5 286 5-293 14-535 (678)
43 PF01602 Adaptin_N: Adaptin N 99.0 6.9E-08 1.5E-12 93.9 22.2 251 3-291 117-369 (526)
44 KOG2171 Karyopherin (importin) 98.9 6.4E-08 1.4E-12 96.6 18.6 232 3-250 351-596 (1075)
45 KOG0168 Putative ubiquitin fus 98.9 1.3E-07 2.8E-12 91.4 19.3 223 83-322 169-397 (1051)
46 KOG0946 ER-Golgi vesicle-tethe 98.9 6.7E-07 1.5E-11 86.1 23.0 278 38-334 21-346 (970)
47 KOG3678 SARM protein (with ste 98.9 2.4E-07 5.2E-12 84.4 17.8 265 4-294 184-455 (832)
48 KOG2023 Nuclear transport rece 98.9 3.2E-07 6.9E-12 86.8 19.1 302 3-331 131-502 (885)
49 KOG2171 Karyopherin (importin) 98.8 2.2E-06 4.8E-11 85.9 24.5 283 3-294 121-507 (1075)
50 KOG2973 Uncharacterized conser 98.8 1.6E-06 3.5E-11 75.2 20.4 269 42-333 6-314 (353)
51 PF14664 RICTOR_N: Rapamycin-i 98.8 5.1E-06 1.1E-10 76.5 23.5 269 8-291 33-364 (371)
52 KOG1293 Proteins containing ar 98.8 1.6E-06 3.5E-11 82.1 20.0 253 3-270 380-651 (678)
53 KOG2759 Vacuolar H+-ATPase V1 98.7 1E-06 2.2E-11 79.4 15.7 236 5-248 161-438 (442)
54 KOG4646 Uncharacterized conser 98.7 4.2E-07 9E-12 69.4 10.7 129 4-133 20-152 (173)
55 KOG4646 Uncharacterized conser 98.6 3.2E-07 6.9E-12 70.0 9.0 121 41-173 18-140 (173)
56 PTZ00429 beta-adaptin; Provisi 98.6 5E-05 1.1E-09 75.8 26.5 178 3-201 143-322 (746)
57 PF05536 Neurochondrin: Neuroc 98.5 2.6E-05 5.7E-10 75.5 20.9 237 40-291 6-261 (543)
58 PF10165 Ric8: Guanine nucleot 98.5 1.6E-05 3.6E-10 75.3 19.1 269 21-293 2-339 (446)
59 PTZ00429 beta-adaptin; Provisi 98.4 0.00026 5.7E-09 70.8 27.0 250 4-292 36-286 (746)
60 KOG4413 26S proteasome regulat 98.4 0.00032 6.9E-09 61.8 22.6 271 9-292 91-378 (524)
61 PF00514 Arm: Armadillo/beta-c 98.4 5.9E-07 1.3E-11 55.1 4.1 41 70-110 1-41 (41)
62 KOG1789 Endocytosis protein RM 98.3 0.00021 4.5E-09 71.5 22.5 264 4-274 1775-2142(2235)
63 TIGR02270 conserved hypothetic 98.3 0.00012 2.7E-09 68.2 20.1 220 3-293 57-298 (410)
64 PF05536 Neurochondrin: Neuroc 98.3 0.00021 4.6E-09 69.3 22.2 247 82-336 6-263 (543)
65 KOG4413 26S proteasome regulat 98.3 0.00029 6.4E-09 62.0 20.2 230 48-293 91-335 (524)
66 PF00514 Arm: Armadillo/beta-c 98.2 3.6E-06 7.7E-11 51.5 5.3 41 207-248 1-41 (41)
67 KOG2734 Uncharacterized conser 98.2 0.00082 1.8E-08 61.4 22.2 259 20-290 104-399 (536)
68 KOG3678 SARM protein (with ste 98.2 0.00053 1.2E-08 63.1 20.1 186 25-228 166-360 (832)
69 KOG0212 Uncharacterized conser 98.1 0.00064 1.4E-08 63.9 20.1 264 8-292 175-445 (675)
70 KOG1242 Protein containing ada 98.1 0.00097 2.1E-08 63.4 21.7 298 3-337 137-447 (569)
71 KOG1789 Endocytosis protein RM 98.1 0.0025 5.5E-08 64.1 24.7 137 16-164 1741-1885(2235)
72 KOG2023 Nuclear transport rece 98.1 8.4E-05 1.8E-09 70.9 14.2 279 3-293 177-507 (885)
73 KOG1059 Vesicle coat complex A 98.1 0.0032 7E-08 60.9 24.5 252 4-293 148-404 (877)
74 PF13646 HEAT_2: HEAT repeats; 98.1 2.1E-05 4.6E-10 56.8 7.8 87 41-158 1-88 (88)
75 KOG0212 Uncharacterized conser 98.1 0.00016 3.6E-09 67.7 14.9 228 3-249 211-445 (675)
76 PF10165 Ric8: Guanine nucleot 98.1 0.0012 2.7E-08 62.6 21.2 238 10-250 42-339 (446)
77 TIGR02270 conserved hypothetic 98.0 0.0016 3.4E-08 61.0 21.4 153 38-247 53-206 (410)
78 PF14664 RICTOR_N: Rapamycin-i 98.0 0.0016 3.5E-08 60.1 20.8 237 32-289 18-267 (371)
79 PF12348 CLASP_N: CLASP N term 97.9 0.00032 6.8E-09 60.5 13.9 176 10-204 17-204 (228)
80 COG5369 Uncharacterized conser 97.9 0.00018 4E-09 67.1 12.3 200 16-228 405-617 (743)
81 PF13646 HEAT_2: HEAT repeats; 97.9 0.00011 2.4E-09 53.0 8.6 87 83-201 1-88 (88)
82 COG5231 VMA13 Vacuolar H+-ATPa 97.9 0.0013 2.8E-08 57.8 16.1 228 52-291 162-428 (432)
83 KOG1241 Karyopherin (importin) 97.9 0.0043 9.4E-08 60.4 20.9 298 15-334 145-477 (859)
84 COG1413 FOG: HEAT repeat [Ener 97.9 0.004 8.7E-08 57.0 20.4 194 3-247 46-241 (335)
85 COG5240 SEC21 Vesicle coat com 97.9 0.00052 1.1E-08 64.7 14.2 263 3-295 267-559 (898)
86 KOG1059 Vesicle coat complex A 97.8 0.0026 5.6E-08 61.6 18.9 240 41-323 146-390 (877)
87 COG5369 Uncharacterized conser 97.8 3.2E-05 6.8E-10 72.0 6.0 267 2-290 433-740 (743)
88 COG5231 VMA13 Vacuolar H+-ATPa 97.8 0.0007 1.5E-08 59.4 13.8 243 2-247 151-427 (432)
89 KOG1241 Karyopherin (importin) 97.8 0.003 6.5E-08 61.5 19.2 295 6-316 370-691 (859)
90 COG5181 HSH155 U2 snRNP splice 97.8 0.0046 1E-07 59.0 19.5 254 5-293 609-872 (975)
91 smart00185 ARM Armadillo/beta- 97.8 5.5E-05 1.2E-09 46.0 4.8 40 71-110 2-41 (41)
92 KOG1062 Vesicle coat complex A 97.8 0.0034 7.3E-08 61.5 18.9 222 48-294 116-382 (866)
93 KOG0213 Splicing factor 3b, su 97.8 0.0013 2.9E-08 63.7 15.9 251 6-293 805-1067(1172)
94 PF12348 CLASP_N: CLASP N term 97.8 0.0004 8.6E-09 59.9 11.5 187 49-252 17-210 (228)
95 KOG2734 Uncharacterized conser 97.8 0.016 3.4E-07 53.3 21.7 226 57-293 102-348 (536)
96 COG1413 FOG: HEAT repeat [Ener 97.7 0.0032 6.9E-08 57.7 17.1 188 39-289 43-240 (335)
97 KOG1062 Vesicle coat complex A 97.6 0.024 5.3E-07 55.7 22.2 304 5-333 112-470 (866)
98 KOG1077 Vesicle coat complex A 97.6 0.014 2.9E-07 56.7 20.0 265 9-293 120-400 (938)
99 KOG1242 Protein containing ada 97.6 0.0051 1.1E-07 58.7 17.1 226 34-289 208-442 (569)
100 PF11841 DUF3361: Domain of un 97.6 0.0029 6.4E-08 50.5 13.0 137 116-258 5-141 (160)
101 KOG1517 Guanine nucleotide bin 97.5 0.0068 1.5E-07 61.1 17.6 221 17-250 487-734 (1387)
102 KOG1517 Guanine nucleotide bin 97.5 0.005 1.1E-07 62.0 16.4 205 78-292 509-733 (1387)
103 smart00185 ARM Armadillo/beta- 97.5 0.00028 6E-09 42.8 5.1 38 31-68 4-41 (41)
104 KOG4151 Myosin assembly protei 97.4 0.0046 1E-07 60.6 14.4 246 70-335 493-742 (748)
105 KOG1077 Vesicle coat complex A 97.4 0.06 1.3E-06 52.4 21.1 297 6-330 152-485 (938)
106 COG5181 HSH155 U2 snRNP splice 97.4 0.0043 9.3E-08 59.2 13.3 248 40-332 605-868 (975)
107 PF09759 Atx10homo_assoc: Spin 97.3 0.0011 2.4E-08 48.9 7.0 65 17-81 3-72 (102)
108 KOG1061 Vesicle coat complex A 97.3 0.0081 1.8E-07 58.7 14.6 69 3-71 124-192 (734)
109 PF13513 HEAT_EZ: HEAT-like re 97.3 0.00048 1E-08 44.9 4.3 55 53-108 1-55 (55)
110 PF11841 DUF3361: Domain of un 97.3 0.015 3.2E-07 46.6 13.4 122 167-291 4-131 (160)
111 KOG1060 Vesicle coat complex A 97.3 0.031 6.8E-07 54.9 18.0 290 2-324 182-523 (968)
112 PF09759 Atx10homo_assoc: Spin 97.3 0.0011 2.4E-08 48.8 6.5 65 56-120 3-70 (102)
113 PF13764 E3_UbLigase_R4: E3 ub 97.2 0.17 3.6E-06 51.3 22.9 246 35-293 113-408 (802)
114 KOG1824 TATA-binding protein-i 97.2 0.071 1.5E-06 53.6 19.6 165 142-314 866-1053(1233)
115 KOG2259 Uncharacterized conser 97.2 0.0019 4.1E-08 61.9 8.4 248 44-330 203-471 (823)
116 PF05004 IFRD: Interferon-rela 97.1 0.22 4.7E-06 45.1 22.1 216 85-318 47-285 (309)
117 KOG2274 Predicted importin 9 [ 97.1 0.12 2.5E-06 51.8 19.9 227 11-252 461-693 (1005)
118 PF13513 HEAT_EZ: HEAT-like re 97.1 0.0016 3.5E-08 42.4 5.2 55 95-160 1-55 (55)
119 COG5215 KAP95 Karyopherin (imp 97.0 0.23 4.9E-06 47.5 20.3 291 6-317 372-692 (858)
120 KOG0213 Splicing factor 3b, su 97.0 0.024 5.3E-07 55.4 14.1 247 43-332 803-1063(1172)
121 COG5240 SEC21 Vesicle coat com 97.0 0.28 6E-06 47.0 20.5 255 48-332 273-553 (898)
122 PF04063 DUF383: Domain of unk 97.0 0.0053 1.1E-07 51.2 8.5 122 51-184 7-157 (192)
123 KOG1824 TATA-binding protein-i 96.9 0.3 6.5E-06 49.4 21.4 317 5-337 179-552 (1233)
124 PF05004 IFRD: Interferon-rela 96.9 0.11 2.3E-06 47.0 17.5 194 41-248 45-257 (309)
125 PF04078 Rcd1: Cell differenti 96.9 0.24 5.2E-06 42.9 19.8 232 94-337 8-261 (262)
126 KOG3036 Protein involved in ce 96.9 0.18 3.8E-06 43.2 16.9 149 54-216 94-257 (293)
127 PF04063 DUF383: Domain of unk 96.9 0.013 2.9E-07 48.8 10.3 124 146-272 8-157 (192)
128 COG5215 KAP95 Karyopherin (imp 96.9 0.37 8.1E-06 46.2 20.4 262 13-292 191-480 (858)
129 KOG3036 Protein involved in ce 96.9 0.13 2.8E-06 44.0 15.8 149 15-173 94-258 (293)
130 PF12717 Cnd1: non-SMC mitotic 96.7 0.19 4.2E-06 41.4 16.0 111 13-133 1-112 (178)
131 KOG1248 Uncharacterized conser 96.7 0.26 5.5E-06 50.9 19.2 227 47-293 662-901 (1176)
132 KOG1240 Protein kinase contain 96.6 0.059 1.3E-06 55.4 14.4 258 52-338 436-729 (1431)
133 PF12717 Cnd1: non-SMC mitotic 96.5 0.37 8.1E-06 39.7 16.4 93 52-163 1-93 (178)
134 KOG2274 Predicted importin 9 [ 96.5 0.39 8.5E-06 48.3 18.7 224 50-292 461-690 (1005)
135 PF08045 CDC14: Cell division 96.5 0.046 1E-06 47.5 11.1 98 15-112 106-209 (257)
136 PF11698 V-ATPase_H_C: V-ATPas 96.5 0.0062 1.4E-07 46.2 5.1 72 38-109 42-114 (119)
137 COG5096 Vesicle coat complex, 96.4 0.17 3.7E-06 50.6 16.1 168 90-292 28-196 (757)
138 KOG2611 Neurochondrin/leucine- 96.4 0.55 1.2E-05 44.1 18.1 195 43-247 15-224 (698)
139 KOG4464 Signaling protein RIC- 96.4 0.59 1.3E-05 43.0 17.8 285 3-291 48-402 (532)
140 KOG1078 Vesicle coat complex C 96.4 0.33 7.1E-06 48.1 17.1 257 3-290 248-531 (865)
141 KOG2999 Regulator of Rac1, req 96.3 0.15 3.2E-06 48.5 14.1 178 83-269 85-263 (713)
142 KOG2611 Neurochondrin/leucine- 96.3 0.67 1.4E-05 43.6 18.0 128 5-133 16-163 (698)
143 PF11698 V-ATPase_H_C: V-ATPas 96.3 0.014 3.1E-07 44.3 6.2 66 3-68 46-115 (119)
144 PF12719 Cnd3: Nuclear condens 96.3 0.24 5.2E-06 44.5 15.3 171 4-186 31-209 (298)
145 PF04078 Rcd1: Cell differenti 96.3 0.052 1.1E-06 47.0 10.2 190 13-216 8-228 (262)
146 PF12755 Vac14_Fab1_bd: Vacuol 96.3 0.057 1.2E-06 39.7 9.2 67 219-289 27-95 (97)
147 PF08569 Mo25: Mo25-like; Int 96.3 0.23 4.9E-06 45.3 14.9 208 75-294 70-286 (335)
148 PF07814 WAPL: Wings apart-lik 96.2 0.6 1.3E-05 43.2 17.7 219 41-261 23-311 (361)
149 PF05918 API5: Apoptosis inhib 96.2 0.5 1.1E-05 45.8 17.4 180 11-216 33-222 (556)
150 PF08045 CDC14: Cell division 96.2 0.077 1.7E-06 46.1 10.7 100 54-162 106-207 (257)
151 COG5096 Vesicle coat complex, 96.1 0.16 3.5E-06 50.7 13.7 164 9-204 28-193 (757)
152 PF06371 Drf_GBD: Diaphanous G 96.0 0.1 2.3E-06 43.2 10.8 104 3-109 69-186 (187)
153 KOG1943 Beta-tubulin folding c 96.0 1.1 2.3E-05 46.2 19.0 255 3-291 344-615 (1133)
154 KOG2999 Regulator of Rac1, req 95.9 0.31 6.7E-06 46.4 14.1 155 123-291 84-242 (713)
155 KOG1058 Vesicle coat complex C 95.9 1.7 3.8E-05 43.1 19.4 207 7-249 106-347 (948)
156 KOG4151 Myosin assembly protei 95.8 0.12 2.5E-06 51.2 11.6 219 31-270 496-720 (748)
157 PF11701 UNC45-central: Myosin 95.8 0.072 1.6E-06 43.0 8.5 147 82-245 4-156 (157)
158 PF12755 Vac14_Fab1_bd: Vacuol 95.7 0.078 1.7E-06 39.0 7.8 87 17-108 3-94 (97)
159 KOG1061 Vesicle coat complex A 95.7 0.19 4.1E-06 49.6 12.3 208 38-275 85-293 (734)
160 PF12031 DUF3518: Domain of un 95.6 0.1 2.2E-06 44.6 9.0 134 96-232 81-229 (257)
161 KOG1240 Protein kinase contain 95.6 1.6 3.4E-05 45.7 18.5 255 13-291 436-725 (1431)
162 KOG1060 Vesicle coat complex A 95.6 2.9 6.2E-05 41.9 21.4 282 4-334 39-350 (968)
163 KOG0915 Uncharacterized conser 95.6 0.83 1.8E-05 48.6 16.9 282 5-315 1044-1362(1702)
164 PF14668 RICTOR_V: Rapamycin-i 95.6 0.077 1.7E-06 36.6 6.7 67 150-219 4-70 (73)
165 KOG1943 Beta-tubulin folding c 95.4 1.5 3.2E-05 45.2 17.7 242 39-315 341-592 (1133)
166 KOG0211 Protein phosphatase 2A 95.4 2 4.4E-05 43.4 18.7 268 41-336 357-627 (759)
167 PF12719 Cnd3: Nuclear condens 95.4 0.66 1.4E-05 41.7 14.3 172 39-231 26-209 (298)
168 KOG0567 HEAT repeat-containing 95.4 1.7 3.6E-05 37.8 15.7 222 13-290 18-279 (289)
169 PF06371 Drf_GBD: Diaphanous G 95.3 0.076 1.6E-06 44.1 7.4 80 167-247 100-186 (187)
170 PF07814 WAPL: Wings apart-lik 95.3 1.6 3.5E-05 40.4 16.7 247 3-251 24-358 (361)
171 KOG0915 Uncharacterized conser 95.3 3.9 8.4E-05 43.9 20.4 234 18-277 939-1187(1702)
172 KOG0211 Protein phosphatase 2A 95.2 2.9 6.3E-05 42.4 18.9 264 3-292 358-626 (759)
173 KOG1078 Vesicle coat complex C 95.0 4.3 9.3E-05 40.6 19.6 65 47-116 253-317 (865)
174 PF14668 RICTOR_V: Rapamycin-i 95.0 0.085 1.8E-06 36.4 5.5 67 98-174 4-70 (73)
175 PF02985 HEAT: HEAT repeat; I 94.9 0.043 9.3E-07 30.9 3.3 28 41-68 2-29 (31)
176 PF13764 E3_UbLigase_R4: E3 ub 94.9 5.2 0.00011 40.9 23.6 220 13-248 135-406 (802)
177 KOG2032 Uncharacterized conser 94.9 1.3 2.7E-05 41.9 14.4 150 37-201 252-411 (533)
178 PF11701 UNC45-central: Myosin 94.8 0.03 6.4E-07 45.3 3.5 105 2-108 45-157 (157)
179 PF05918 API5: Apoptosis inhib 94.8 4.4 9.5E-05 39.5 18.5 168 93-291 34-207 (556)
180 KOG4535 HEAT and armadillo rep 94.7 0.59 1.3E-05 43.9 11.7 211 39-275 433-659 (728)
181 KOG2259 Uncharacterized conser 94.6 0.2 4.4E-06 48.6 8.7 135 38-197 372-506 (823)
182 PF12460 MMS19_C: RNAPII trans 94.5 0.63 1.4E-05 44.0 12.1 140 11-164 241-396 (415)
183 KOG2025 Chromosome condensatio 94.2 1.9 4.2E-05 42.5 14.4 106 80-201 84-189 (892)
184 KOG3665 ZYG-1-like serine/thre 94.2 1.3 2.8E-05 44.7 13.9 195 62-288 494-694 (699)
185 PF02985 HEAT: HEAT repeat; I 94.2 0.11 2.5E-06 29.1 3.9 29 264-292 2-30 (31)
186 PF14500 MMS19_N: Dos2-interac 94.1 3.9 8.4E-05 36.0 16.8 217 4-251 3-240 (262)
187 KOG1967 DNA repair/transcripti 94.1 0.38 8.2E-06 48.5 9.6 212 13-242 787-1018(1030)
188 KOG1991 Nuclear transport rece 94.0 8.3 0.00018 39.7 25.0 260 13-291 431-711 (1010)
189 PF08324 PUL: PUL domain; Int 93.8 0.61 1.3E-05 41.2 9.9 168 5-182 68-252 (268)
190 PF12231 Rif1_N: Rap1-interact 93.8 4.1 9E-05 37.9 15.7 189 92-291 4-204 (372)
191 KOG1248 Uncharacterized conser 93.6 5.7 0.00012 41.6 17.0 229 10-252 664-902 (1176)
192 COG5209 RCD1 Uncharacterized p 93.6 0.89 1.9E-05 38.5 9.6 147 55-215 116-277 (315)
193 KOG4653 Uncharacterized conser 93.5 6.4 0.00014 39.9 16.7 219 93-336 739-966 (982)
194 PF08569 Mo25: Mo25-like; Int 93.0 7.1 0.00015 35.7 18.0 163 116-293 70-240 (335)
195 PF12460 MMS19_C: RNAPII trans 93.0 7 0.00015 37.0 16.1 123 175-313 272-410 (415)
196 PF06025 DUF913: Domain of Unk 92.9 8 0.00017 36.0 17.7 192 58-260 3-243 (379)
197 KOG2062 26S proteasome regulat 92.6 6.1 0.00013 39.4 14.9 99 174-291 554-653 (929)
198 KOG4653 Uncharacterized conser 92.4 4.2 9.2E-05 41.1 13.8 175 7-204 734-917 (982)
199 KOG4535 HEAT and armadillo rep 92.3 8.9 0.00019 36.4 15.0 282 14-314 269-582 (728)
200 COG5209 RCD1 Uncharacterized p 92.2 0.8 1.7E-05 38.8 7.4 145 17-171 117-277 (315)
201 PF08324 PUL: PUL domain; Int 92.2 2 4.3E-05 37.9 10.7 176 52-239 76-265 (268)
202 KOG1058 Vesicle coat complex C 92.0 15 0.00032 36.9 17.9 97 145-258 329-434 (948)
203 KOG0414 Chromosome condensatio 91.8 2.9 6.3E-05 43.6 12.3 143 123-290 920-1063(1251)
204 cd03568 VHS_STAM VHS domain fa 91.3 1.2 2.5E-05 35.4 7.4 73 219-291 37-110 (144)
205 KOG1820 Microtubule-associated 91.3 10 0.00023 38.8 15.7 179 92-292 264-444 (815)
206 KOG0567 HEAT repeat-containing 91.2 9.7 0.00021 33.2 14.9 92 123-247 188-279 (289)
207 PF06025 DUF913: Domain of Unk 91.1 13 0.00029 34.6 17.8 132 76-216 100-243 (379)
208 PF11865 DUF3385: Domain of un 90.9 4.5 9.7E-05 32.7 10.5 145 122-289 10-155 (160)
209 KOG0301 Phospholipase A2-activ 90.8 11 0.00023 37.3 14.3 166 9-186 553-728 (745)
210 cd03567 VHS_GGA VHS domain fam 90.7 1.5 3.3E-05 34.5 7.4 73 219-291 38-116 (139)
211 KOG1820 Microtubule-associated 90.5 12 0.00025 38.5 15.2 180 3-202 256-440 (815)
212 KOG0414 Chromosome condensatio 90.5 1.5 3.2E-05 45.7 8.8 135 176-330 921-1060(1251)
213 KOG1967 DNA repair/transcripti 90.5 1.4 3E-05 44.7 8.4 152 38-201 866-1020(1030)
214 cd03569 VHS_Hrs_Vps27p VHS dom 90.4 1.6 3.5E-05 34.5 7.4 73 219-291 41-114 (142)
215 cd03561 VHS VHS domain family; 90.4 2 4.3E-05 33.5 7.9 73 219-291 37-112 (133)
216 KOG2025 Chromosome condensatio 90.3 1.9 4.1E-05 42.6 9.0 116 38-171 84-199 (892)
217 KOG2062 26S proteasome regulat 89.9 13 0.00028 37.2 14.2 131 38-201 517-649 (929)
218 KOG1832 HIV-1 Vpr-binding prot 89.8 0.86 1.9E-05 46.0 6.3 136 32-174 594-785 (1516)
219 PF11707 Npa1: Ribosome 60S bi 89.3 17 0.00037 33.2 16.7 157 4-167 60-242 (330)
220 PF14500 MMS19_N: Dos2-interac 89.3 14 0.0003 32.6 13.1 220 42-291 2-237 (262)
221 KOG2956 CLIP-associating prote 89.3 20 0.00043 34.0 15.5 174 52-248 300-477 (516)
222 PRK14707 hypothetical protein; 88.8 48 0.001 37.7 20.5 284 12-315 177-467 (2710)
223 PF08167 RIX1: rRNA processing 88.6 6.1 0.00013 32.1 9.8 106 3-110 28-143 (165)
224 COG5218 YCG1 Chromosome conden 88.5 4.1 9E-05 39.5 9.7 103 80-198 90-192 (885)
225 PF14726 RTTN_N: Rotatin, an a 88.3 3.4 7.4E-05 30.3 7.2 90 15-105 2-95 (98)
226 PF12031 DUF3518: Domain of un 88.2 1.8 4E-05 37.1 6.5 130 147-278 80-232 (257)
227 KOG2933 Uncharacterized conser 88.2 4.4 9.6E-05 36.1 9.0 134 5-160 93-232 (334)
228 KOG3665 ZYG-1-like serine/thre 88.1 20 0.00044 36.4 14.8 136 156-294 494-657 (699)
229 COG5218 YCG1 Chromosome conden 87.7 8.7 0.00019 37.4 11.2 86 203-293 78-163 (885)
230 cd03568 VHS_STAM VHS domain fa 86.3 4.5 9.7E-05 32.1 7.5 67 3-69 40-111 (144)
231 KOG0301 Phospholipase A2-activ 86.2 24 0.00052 34.9 13.4 168 46-230 551-727 (745)
232 KOG2956 CLIP-associating prote 85.7 33 0.00071 32.6 13.6 129 193-337 304-438 (516)
233 COG5098 Chromosome condensatio 85.7 4.9 0.00011 39.8 8.6 109 3-113 302-418 (1128)
234 PF14726 RTTN_N: Rotatin, an a 85.7 9 0.0002 28.1 8.2 95 191-287 2-96 (98)
235 KOG1788 Uncharacterized conser 85.2 26 0.00056 36.9 13.4 226 60-293 663-984 (2799)
236 smart00288 VHS Domain present 85.1 4.1 8.8E-05 31.8 6.7 73 219-291 37-111 (133)
237 PF00790 VHS: VHS domain; Int 85.1 2.9 6.4E-05 32.9 5.9 73 219-291 42-118 (140)
238 PF08167 RIX1: rRNA processing 85.1 16 0.00035 29.6 10.5 115 219-336 25-145 (165)
239 PF12530 DUF3730: Protein of u 85.1 24 0.00052 30.4 17.0 144 42-205 3-150 (234)
240 COG5098 Chromosome condensatio 84.7 39 0.00084 33.9 14.0 131 12-164 908-1039(1128)
241 PF01347 Vitellogenin_N: Lipop 83.6 5.8 0.00013 39.6 8.7 137 13-185 448-603 (618)
242 cd03572 ENTH_epsin_related ENT 83.2 7 0.00015 30.0 7.0 32 263-294 39-70 (122)
243 PF10363 DUF2435: Protein of u 83.0 6.1 0.00013 28.6 6.3 83 42-133 6-88 (92)
244 cd03561 VHS VHS domain family; 82.9 9.2 0.0002 29.8 7.8 67 3-69 40-113 (133)
245 cd03567 VHS_GGA VHS domain fam 82.8 9.1 0.0002 30.1 7.7 66 3-68 41-116 (139)
246 COG5656 SXM1 Importin, protein 82.8 58 0.0012 33.0 19.1 135 38-185 407-553 (970)
247 KOG1788 Uncharacterized conser 82.7 21 0.00045 37.6 11.7 247 10-273 477-785 (2799)
248 cd03569 VHS_Hrs_Vps27p VHS dom 82.7 8.2 0.00018 30.5 7.5 66 3-68 44-114 (142)
249 KOG1243 Protein kinase [Genera 82.6 55 0.0012 32.7 15.2 249 9-290 263-514 (690)
250 PF08506 Cse1: Cse1; InterPro 82.4 42 0.00092 31.2 15.7 173 52-243 155-370 (370)
251 PF10363 DUF2435: Protein of u 82.0 2.4 5.2E-05 30.8 3.9 67 5-71 8-75 (92)
252 KOG2137 Protein kinase [Signal 81.4 11 0.00024 37.4 9.2 133 80-232 388-521 (700)
253 COG5116 RPN2 26S proteasome re 81.3 20 0.00043 35.0 10.5 121 38-186 550-674 (926)
254 PF13251 DUF4042: Domain of un 80.8 31 0.00066 28.6 12.2 134 16-163 2-175 (182)
255 PF13251 DUF4042: Domain of un 80.2 32 0.0007 28.4 10.7 131 55-202 2-171 (182)
256 PF01603 B56: Protein phosphat 78.5 16 0.00034 34.6 9.1 225 3-250 136-372 (409)
257 smart00638 LPD_N Lipoprotein N 77.6 77 0.0017 31.3 21.1 232 17-286 287-540 (574)
258 smart00288 VHS Domain present 77.4 16 0.00034 28.5 7.5 66 3-68 40-111 (133)
259 KOG1020 Sister chromatid cohes 77.2 45 0.00097 36.4 12.5 101 4-113 820-924 (1692)
260 PF11865 DUF3385: Domain of un 77.2 29 0.00064 27.9 9.3 144 82-246 11-155 (160)
261 KOG1020 Sister chromatid cohes 77.0 58 0.0013 35.7 13.1 30 83-112 818-847 (1692)
262 cd03572 ENTH_epsin_related ENT 76.9 8.1 0.00018 29.6 5.5 65 2-66 40-117 (122)
263 KOG1991 Nuclear transport rece 76.7 1E+02 0.0022 32.2 21.4 275 2-291 460-757 (1010)
264 KOG2032 Uncharacterized conser 76.6 22 0.00047 34.0 9.1 155 79-247 252-414 (533)
265 PF14225 MOR2-PAG1_C: Cell mor 76.6 53 0.0011 28.9 16.7 180 6-202 13-251 (262)
266 KOG1832 HIV-1 Vpr-binding prot 76.2 6.2 0.00014 40.2 5.9 71 52-122 675-785 (1516)
267 cd08050 TAF6 TATA Binding Prot 76.0 23 0.00051 32.5 9.4 138 6-160 184-338 (343)
268 KOG1566 Conserved protein Mo25 74.1 68 0.0015 28.9 17.9 208 74-294 72-289 (342)
269 PF00790 VHS: VHS domain; Int 73.9 30 0.00066 27.1 8.4 70 263-332 43-116 (140)
270 KOG1992 Nuclear export recepto 73.6 1.1E+02 0.0025 31.3 14.5 272 18-335 311-600 (960)
271 PF08216 CTNNBL: Catenin-beta- 72.6 8.1 0.00017 28.8 4.4 42 193-236 63-104 (108)
272 PF12726 SEN1_N: SEN1 N termin 72.3 74 0.0016 32.6 12.8 101 233-337 495-607 (727)
273 PF14666 RICTOR_M: Rapamycin-i 72.2 63 0.0014 27.8 14.1 159 119-290 48-224 (226)
274 PF08506 Cse1: Cse1; InterPro 71.9 86 0.0019 29.2 12.2 139 3-157 213-370 (370)
275 KOG1243 Protein kinase [Genera 71.5 26 0.00057 34.8 8.7 148 119-289 327-474 (690)
276 KOG2137 Protein kinase [Signal 71.3 30 0.00065 34.6 9.1 126 4-133 393-519 (700)
277 KOG4231 Intracellular membrane 71.1 0.76 1.6E-05 43.5 -1.5 61 229-291 338-399 (763)
278 PF01347 Vitellogenin_N: Lipop 70.4 38 0.00082 33.8 10.2 113 10-157 500-617 (618)
279 cd03565 VHS_Tom1 VHS domain fa 70.1 36 0.00079 26.8 8.0 72 220-291 39-115 (141)
280 PF08216 CTNNBL: Catenin-beta- 70.0 6.4 0.00014 29.4 3.4 42 56-98 63-104 (108)
281 cd00197 VHS_ENTH_ANTH VHS, ENT 69.3 35 0.00077 25.5 7.6 71 220-290 38-114 (115)
282 PF04821 TIMELESS: Timeless pr 69.1 81 0.0018 27.8 15.3 173 31-250 32-210 (266)
283 KOG0413 Uncharacterized conser 68.4 33 0.00071 35.7 8.8 128 191-335 946-1074(1529)
284 PF11864 DUF3384: Domain of un 66.5 1.3E+02 0.0027 29.0 24.1 296 14-333 4-329 (464)
285 COG5116 RPN2 26S proteasome re 66.1 31 0.00067 33.7 7.8 109 10-133 562-673 (926)
286 PRK14707 hypothetical protein; 66.1 2.6E+02 0.0056 32.4 21.8 253 41-315 165-425 (2710)
287 KOG2933 Uncharacterized conser 65.4 1.1E+02 0.0023 27.7 13.3 139 123-289 89-232 (334)
288 PF10521 DUF2454: Protein of u 65.3 1E+02 0.0022 27.4 11.8 118 219-336 119-255 (282)
289 PF12530 DUF3730: Protein of u 64.5 93 0.002 26.8 19.2 139 84-249 3-152 (234)
290 PF14225 MOR2-PAG1_C: Cell mor 63.6 1E+02 0.0023 27.1 19.4 170 146-335 75-255 (262)
291 PF06685 DUF1186: Protein of u 63.6 1E+02 0.0022 26.9 12.5 72 173-247 110-182 (249)
292 KOG2038 CAATT-binding transcri 62.2 1.4E+02 0.0031 30.4 11.6 70 218-293 303-373 (988)
293 cd08050 TAF6 TATA Binding Prot 61.1 1.3E+02 0.0028 27.7 10.9 104 82-186 211-321 (343)
294 PF10521 DUF2454: Protein of u 60.8 1.2E+02 0.0026 26.9 10.4 66 3-68 122-203 (282)
295 KOG1992 Nuclear export recepto 58.5 1.5E+02 0.0032 30.6 11.1 178 39-230 498-706 (960)
296 cd00197 VHS_ENTH_ANTH VHS, ENT 58.2 56 0.0012 24.4 6.9 68 263-330 38-111 (115)
297 KOG2676 Uncharacterized conser 56.7 12 0.00027 34.0 3.3 62 59-120 376-440 (478)
298 smart00638 LPD_N Lipoprotein N 56.2 2.1E+02 0.0046 28.2 18.8 206 5-245 316-542 (574)
299 PF11864 DUF3384: Domain of un 55.5 2E+02 0.0043 27.7 20.1 129 177-314 216-352 (464)
300 PF01365 RYDR_ITPR: RIH domain 55.5 27 0.00058 29.4 5.1 100 31-133 35-153 (207)
301 KOG1087 Cytosolic sorting prot 54.2 41 0.00089 32.3 6.5 69 220-288 39-109 (470)
302 KOG2549 Transcription initiati 53.6 2.2E+02 0.0048 27.9 11.1 140 5-161 212-369 (576)
303 PF14663 RasGEF_N_2: Rapamycin 53.6 53 0.0011 24.8 6.0 38 82-119 9-46 (115)
304 PF12463 DUF3689: Protein of u 52.9 1.8E+02 0.0038 26.3 13.2 132 74-214 2-182 (303)
305 KOG2199 Signal transducing ada 52.8 1.1E+02 0.0024 28.5 8.6 73 219-291 45-118 (462)
306 KOG2038 CAATT-binding transcri 52.2 2E+02 0.0044 29.4 10.8 99 83-201 306-405 (988)
307 PF08389 Xpo1: Exportin 1-like 52.1 1.1E+02 0.0023 23.6 8.5 96 5-105 31-148 (148)
308 PF10274 ParcG: Parkin co-regu 51.2 1.4E+02 0.0031 24.7 9.3 64 5-68 43-109 (183)
309 PF12830 Nipped-B_C: Sister ch 50.4 1.4E+02 0.0031 24.6 12.2 126 41-185 10-141 (187)
310 PF06012 DUF908: Domain of Unk 49.7 75 0.0016 29.0 7.4 67 98-172 239-307 (329)
311 PF06012 DUF908: Domain of Unk 49.7 93 0.002 28.4 8.0 76 54-130 237-324 (329)
312 PLN03076 ARF guanine nucleotid 47.5 4.9E+02 0.011 29.9 17.0 133 17-161 1109-1252(1780)
313 PF07923 N1221: N1221-like pro 47.1 36 0.00079 30.5 4.9 57 36-92 57-127 (293)
314 PF04064 DUF384: Domain of unk 45.9 84 0.0018 20.6 5.4 48 243-292 2-50 (58)
315 KOG1988 Uncharacterized conser 45.7 2.7E+02 0.0058 28.9 10.7 208 7-247 70-280 (970)
316 KOG1566 Conserved protein Mo25 44.1 2.5E+02 0.0054 25.5 14.7 187 4-207 83-287 (342)
317 PF12783 Sec7_N: Guanine nucle 43.8 75 0.0016 25.6 5.9 84 76-170 68-154 (168)
318 PF12054 DUF3535: Domain of un 41.4 2.1E+02 0.0045 27.4 9.2 75 15-93 102-180 (441)
319 PF04388 Hamartin: Hamartin pr 41.0 4E+02 0.0088 27.1 12.2 135 81-247 4-139 (668)
320 PF04869 Uso1_p115_head: Uso1 40.9 2.8E+02 0.006 25.2 12.6 143 52-201 51-227 (312)
321 KOG1949 Uncharacterized conser 40.8 1.2E+02 0.0026 30.7 7.4 141 2-159 176-328 (1005)
322 KOG2676 Uncharacterized conser 40.5 34 0.00074 31.3 3.5 61 20-80 376-441 (478)
323 PF01365 RYDR_ITPR: RIH domain 40.3 1.6E+02 0.0035 24.6 7.6 116 170-292 39-170 (207)
324 KOG4231 Intracellular membrane 39.8 41 0.00088 32.4 4.0 67 84-161 331-398 (763)
325 PF11707 Npa1: Ribosome 60S bi 39.8 2.9E+02 0.0064 25.1 21.8 156 176-333 58-236 (330)
326 PF04388 Hamartin: Hamartin pr 39.4 3.7E+02 0.008 27.3 11.0 106 4-109 8-139 (668)
327 COG5656 SXM1 Importin, protein 39.0 4.5E+02 0.0098 27.0 14.2 234 10-250 470-713 (970)
328 PLN03076 ARF guanine nucleotid 38.4 6.8E+02 0.015 28.9 22.5 266 5-292 1142-1490(1780)
329 PF04499 SAPS: SIT4 phosphatas 37.4 3.9E+02 0.0085 25.9 10.9 112 174-292 21-150 (475)
330 PF12231 Rif1_N: Rap1-interact 36.4 3.5E+02 0.0077 25.1 21.9 268 49-337 3-306 (372)
331 KOG1791 Uncharacterized conser 36.3 6.7E+02 0.015 28.2 12.3 175 72-247 1430-1659(1758)
332 PF11157 DUF2937: Protein of u 36.0 2E+02 0.0043 23.4 7.1 73 2-77 59-136 (167)
333 PF09758 FPL: Uncharacterised 35.6 1.5E+02 0.0032 23.7 6.0 122 70-201 15-144 (149)
334 PF14663 RasGEF_N_2: Rapamycin 35.5 1.9E+02 0.0042 21.7 9.1 39 40-79 9-47 (115)
335 KOG1087 Cytosolic sorting prot 35.4 65 0.0014 31.0 4.7 68 263-330 39-108 (470)
336 cd03565 VHS_Tom1 VHS domain fa 35.3 2.2E+02 0.0047 22.3 8.2 65 4-68 42-115 (141)
337 PF14961 BROMI: Broad-minded p 35.2 5.5E+02 0.012 28.0 11.4 209 58-270 485-747 (1296)
338 KOG1848 Uncharacterized conser 34.7 6.8E+02 0.015 27.8 12.3 168 145-324 854-1035(1610)
339 KOG2199 Signal transducing ada 34.6 75 0.0016 29.5 4.7 95 10-110 22-118 (462)
340 KOG4524 Uncharacterized conser 33.3 1.2E+02 0.0025 31.8 6.3 85 6-90 809-898 (1014)
341 PF04499 SAPS: SIT4 phosphatas 33.2 4.6E+02 0.0099 25.4 11.5 119 214-336 16-150 (475)
342 smart00567 EZ_HEAT E-Z type HE 33.1 35 0.00075 18.4 1.6 12 16-27 3-14 (30)
343 PF11791 Aconitase_B_N: Aconit 32.3 81 0.0018 25.1 4.0 29 123-162 95-123 (154)
344 PF08389 Xpo1: Exportin 1-like 32.2 90 0.002 24.0 4.6 62 220-286 83-148 (148)
345 PF12830 Nipped-B_C: Sister ch 31.5 3E+02 0.0064 22.7 12.9 146 83-250 10-169 (187)
346 PF14631 FancD2: Fanconi anaem 29.7 2.6E+02 0.0056 31.3 8.6 101 8-112 443-544 (1426)
347 KOG1848 Uncharacterized conser 29.3 7.4E+02 0.016 27.6 11.3 122 147-275 900-1029(1610)
348 PF07571 DUF1546: Protein of u 28.6 1.7E+02 0.0037 21.0 5.0 57 145-201 18-74 (92)
349 PF14631 FancD2: Fanconi anaem 28.4 6.1E+02 0.013 28.5 11.1 109 38-163 430-543 (1426)
350 PF12765 Cohesin_HEAT: HEAT re 27.6 58 0.0013 19.6 2.0 25 262-286 18-42 (42)
351 PF07571 DUF1546: Protein of u 27.5 1.8E+02 0.0039 20.9 5.0 55 12-66 18-76 (92)
352 KOG4464 Signaling protein RIC- 27.5 5.4E+02 0.012 24.4 13.9 155 124-290 47-227 (532)
353 PF03130 HEAT_PBS: PBS lyase H 27.0 70 0.0015 16.9 2.1 26 149-184 1-26 (27)
354 PF04869 Uso1_p115_head: Uso1 26.8 3.9E+02 0.0086 24.2 8.1 85 175-260 35-137 (312)
355 KOG2149 Uncharacterized conser 26.7 5E+02 0.011 24.4 8.7 107 4-110 62-170 (393)
356 PHA02855 anti-apoptotic membra 26.2 1.7E+02 0.0037 23.6 4.9 56 265-321 79-135 (180)
357 KOG1525 Sister chromatid cohes 26.1 2.3E+02 0.0049 31.1 7.2 66 3-68 262-329 (1266)
358 KOG2152 Sister chromatid cohes 25.8 7.4E+02 0.016 25.5 12.0 65 151-216 475-554 (865)
359 KOG2152 Sister chromatid cohes 25.6 7.5E+02 0.016 25.4 10.5 80 235-318 348-429 (865)
360 PF11791 Aconitase_B_N: Aconit 25.3 3.6E+02 0.0077 21.6 7.4 26 175-202 95-120 (154)
361 PF07923 N1221: N1221-like pro 25.1 1.2E+02 0.0026 27.1 4.5 48 3-50 63-127 (293)
362 PF10274 ParcG: Parkin co-regu 24.8 4E+02 0.0087 22.0 9.5 74 219-294 38-112 (183)
363 PF06685 DUF1186: Protein of u 24.6 4.8E+02 0.01 22.8 14.4 102 174-294 31-145 (249)
364 PF08064 UME: UME (NUC010) dom 24.2 3E+02 0.0065 20.3 7.2 57 275-337 28-86 (107)
365 PLN03205 ATR interacting prote 23.5 2.9E+02 0.0062 26.1 6.5 113 39-161 323-445 (652)
366 PLN03205 ATR interacting prote 23.3 3E+02 0.0066 25.9 6.6 110 3-112 326-448 (652)
367 PF12463 DUF3689: Protein of u 22.0 5.9E+02 0.013 23.0 14.6 178 115-293 2-223 (303)
368 PF14515 HOASN: Haem-oxygenase 21.4 3E+02 0.0064 19.2 5.9 55 279-336 35-89 (93)
369 COG5095 TAF6 Transcription ini 20.4 6.5E+02 0.014 22.8 7.9 37 97-133 303-340 (450)
370 PF13001 Ecm29: Proteasome sta 20.0 4E+02 0.0086 26.0 7.2 98 52-162 334-443 (501)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.4e-31 Score=278.21 Aligned_cols=316 Identities=19% Similarity=0.203 Sum_probs=273.6
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113 2 EEMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV 78 (339)
Q Consensus 2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~ 78 (339)
+++||.+|.+++.+.|..++++|..++.+ .++.+.+.|+++.|+++|++++++.|..|++++++++.++++++..++
T Consensus 406 ik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIi 485 (2102)
T PLN03200 406 KKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAIT 485 (2102)
T ss_pred hhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 47899999999999999999999999965 889999999999999999999999999999999999998889999999
Q ss_pred hcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccc-hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113 79 KSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN-KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL 157 (339)
Q Consensus 79 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L 157 (339)
++|++|.|+++|.++++.+++.|+|+|.|++.++++ +..|.+.|++++|+++|++ +++..+..|+++|
T Consensus 486 eaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~s-----------gd~~~q~~Aa~AL 554 (2102)
T PLN03200 486 AAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKN-----------GGPKGQEIAAKTL 554 (2102)
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhC-----------CCHHHHHHHHHHH
Confidence 999999999999999999999999999999986655 5556688999999999999 7889999999999
Q ss_pred HhhcCCCCCh-------------------------------------HH-HHhcCcHHHHHHHhhccccCchHHHHHHHH
Q 048113 158 HNLSTCHQLI-------------------------------------SP-IVSSGVTYCLLQLIHSSEKSSGLTEKAIAL 199 (339)
Q Consensus 158 ~nLs~~~~~~-------------------------------------~~-i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~ 199 (339)
.||+...++. .. ....|+++.|+++++++ ++.+++.|+++
T Consensus 555 ~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg--s~~ikk~Aa~i 632 (2102)
T PLN03200 555 TKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS--KEETQEKAASV 632 (2102)
T ss_pred HHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC--CHHHHHHHHHH
Confidence 9996422111 11 11358999999999986 57899999999
Q ss_pred HHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHH
Q 048113 200 LENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAK 279 (339)
Q Consensus 200 L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~ 279 (339)
|.|.++..++.+..++. .|++++|+.+|++++.+++..++++|.+++.......+..+++.|++|+|++++.+.+..++
T Consensus 633 LsnL~a~~~d~~~avv~-agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~ 711 (2102)
T PLN03200 633 LADIFSSRQDLCESLAT-DEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVA 711 (2102)
T ss_pred HHHHhcCChHHHHHHHH-cCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHH
Confidence 99777777888888887 89999999999999999999999999999976555556678899999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHH
Q 048113 280 NMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMI 333 (339)
Q Consensus 280 ~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v 333 (339)
+.|+.+|.+|...++. ..+....+++..+++.+....++.++.|.+.|..+-
T Consensus 712 e~Al~ALanLl~~~e~--~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~ 763 (2102)
T PLN03200 712 EQAVCALANLLSDPEV--AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLL 763 (2102)
T ss_pred HHHHHHHHHHHcCchH--HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 9999999999998762 334456788888888886666777888877776553
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.8e-30 Score=270.09 Aligned_cols=318 Identities=21% Similarity=0.249 Sum_probs=272.5
Q ss_pred cHHHHHHHcCCCHH-HHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113 2 EEMLMDNLLNGERE-TQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV 78 (339)
Q Consensus 2 ~~~Lv~~L~s~~~~-~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~ 78 (339)
++.|+.++++.++. ++..++.+|+.+..+ .++.+.+.|+++.|+.+|...+.++|..++++|.+|+.++++.+..+.
T Consensus 364 ~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi 443 (2102)
T PLN03200 364 EQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALG 443 (2102)
T ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 46789999988766 488899999988877 788888999999999999999999999999999999998899999999
Q ss_pred hcCChHHHHHhhcCCChhHHHHHHHHHHHHhc-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113 79 KSGIVPVLLEVLQCQSTTLIELTVAAMLILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL 157 (339)
Q Consensus 79 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L 157 (339)
+.|++|.|+++|.++++..++.|++++.|++. +++++..|.+.|+||+|+++|.+ ++..+++.|+++|
T Consensus 444 ~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s-----------~~~~iqeeAawAL 512 (2102)
T PLN03200 444 GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET-----------GSQKAKEDSATVL 512 (2102)
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-----------CCHHHHHHHHHHH
Confidence 99999999999999999999999999999996 55678899999999999999998 7999999999999
Q ss_pred HhhcCCCCChHHHH-hcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhh--------------------------
Q 048113 158 HNLSTCHQLISPIV-SSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDA-------------------------- 210 (339)
Q Consensus 158 ~nLs~~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~-------------------------- 210 (339)
.|++.++++++.++ +.|++++|+++|+++ +.+.++.|+++|+| +....+.
T Consensus 513 ~NLa~~~~qir~iV~~aGAIppLV~LL~sg--d~~~q~~Aa~AL~n-Li~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLg 589 (2102)
T PLN03200 513 WNLCCHSEDIRACVESAGAVPALLWLLKNG--GPKGQEIAAKTLTK-LVRTADAATISQLTALLLGDLPESKVHVLDVLG 589 (2102)
T ss_pred HHHhCCcHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHH-HHhccchhHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 99999776666655 679999999999986 47888999999994 5321111
Q ss_pred -----------hHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHH
Q 048113 211 -----------LQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAK 279 (339)
Q Consensus 211 -----------~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~ 279 (339)
........|+++.|+++++++++.+++.|+++|.+++...+ +.+..++..|++|+|+.++++++..++
T Consensus 590 nIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~-d~~~avv~agaIpPLV~LLss~~~~v~ 668 (2102)
T PLN03200 590 HVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQ-DLCESLATDEIINPCIKLLTNNTEAVA 668 (2102)
T ss_pred HHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCh-HHHHHHHHcCCHHHHHHHHhcCChHHH
Confidence 11111236899999999999999999999999999998764 478889999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHHH
Q 048113 280 NMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIA 334 (339)
Q Consensus 280 ~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v~ 334 (339)
+.|+++|.+++.+....+....+..+.++.++..+.....++.+.|...|+.+..
T Consensus 669 keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~ 723 (2102)
T PLN03200 669 TQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLS 723 (2102)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHc
Confidence 9999999999976543222234667889998888877778889999998888754
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2.4e-30 Score=237.89 Aligned_cols=315 Identities=17% Similarity=0.215 Sum_probs=258.0
Q ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113 3 EMLMDNLL-NGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV 78 (339)
Q Consensus 3 ~~Lv~~L~-s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~ 78 (339)
+.||..|. ..++..+.+|+|+|.|++.+ ..+.+++.|++|.++.++.+++.++++.|.|+|+|++.+.+..|..+.
T Consensus 112 ~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl 191 (514)
T KOG0166|consen 112 PRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVL 191 (514)
T ss_pred HHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHH
Confidence 56888886 55699999999999999986 677888999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHhhcCCCh-hHHHHHHHHHHHHhcCcc-chHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHH
Q 048113 79 KSGIVPVLLEVLQCQST-TLIELTVAAMLILSSCLE-NKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIAT 156 (339)
Q Consensus 79 ~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~ 156 (339)
+.|++++|+.++..+++ .....+.|+|.||+.... ....-.-..++|.|.+++++ .++.+...|+++
T Consensus 192 ~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~-----------~D~~Vl~Da~WA 260 (514)
T KOG0166|consen 192 SCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHS-----------TDEEVLTDACWA 260 (514)
T ss_pred hhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhc-----------CCHHHHHHHHHH
Confidence 99999999999998865 688899999999997653 33333346789999999999 899999999999
Q ss_pred HHhhcCC-CCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhh-cCChH
Q 048113 157 LHNLSTC-HQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIE-EGSPQ 234 (339)
Q Consensus 157 L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~ 234 (339)
|.+|+.. ++....+++.|+++.|+++|... +..++..|+++++|..+.++...+.+.+ .|+++.|..++. +..+.
T Consensus 261 lsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~--~~~v~~PaLRaiGNIvtG~d~QTq~vi~-~~~L~~l~~ll~~s~~~~ 337 (514)
T KOG0166|consen 261 LSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS--SPKVVTPALRAIGNIVTGSDEQTQVVIN-SGALPVLSNLLSSSPKES 337 (514)
T ss_pred HHHHhcCChHHHHHHHHccchHHHHHHHcCC--CcccccHHHhhccceeeccHHHHHHHHh-cChHHHHHHHhccCcchh
Confidence 9999975 45667778999999999999985 4678899999999655555555666666 999999999998 55677
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHH
Q 048113 235 CKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEI 314 (339)
Q Consensus 235 ~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 314 (339)
++..|+|++.|++..... ..+.++++|.+|.|+.++++++.+.|..|+|++.|++.++...+-...+..+.+..+...+
T Consensus 338 ikkEAcW~iSNItAG~~~-qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL 416 (514)
T KOG0166|consen 338 IKKEACWTISNITAGNQE-QIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLL 416 (514)
T ss_pred HHHHHHHHHHHhhcCCHH-HHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcc
Confidence 999999999999997654 6788899999999999999999999999999999999877643222233344444444443
Q ss_pred HhcCcccchHHHHHHHHH
Q 048113 315 DAEGDTVAGTTLRLVEEM 332 (339)
Q Consensus 315 ~~~~~~~~~~a~~~l~~~ 332 (339)
...+.++-..+...+..+
T Consensus 417 ~~~D~~ii~v~Ld~l~ni 434 (514)
T KOG0166|consen 417 TCPDVKIILVALDGLENI 434 (514)
T ss_pred cCCChHHHHHHHHHHHHH
Confidence 333333333444444444
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=4.4e-31 Score=228.83 Aligned_cols=311 Identities=22% Similarity=0.274 Sum_probs=273.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113 5 LMDNLLNGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI 82 (339)
Q Consensus 5 Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~ 82 (339)
|+.-..++.-++|+.++.++.+++.. +|..+...|++.++.++-++.+..+|++|+.+|.+++. ..++|+.++.+|+
T Consensus 131 Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~ 209 (550)
T KOG4224|consen 131 LILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGG 209 (550)
T ss_pred HHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCC
Confidence 44444567778999999999999875 99999999999999999899999999999999999999 7999999999999
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcc--hHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhh
Q 048113 83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSG--AIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNL 160 (339)
Q Consensus 83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g--~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nL 160 (339)
+|.|+.++.+++..++.+++.++.|++-+...|..+++.+ .++.|++++++ +++.++-.|..+|.||
T Consensus 210 lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~-----------~s~kvkcqA~lALrnl 278 (550)
T KOG4224|consen 210 LPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDD-----------GSDKVKCQAGLALRNL 278 (550)
T ss_pred chhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhC-----------CChHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999988888776 99999999999 8999999999999999
Q ss_pred cCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC-ChHHHHHH
Q 048113 161 STCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEG-SPQCKEHA 239 (339)
Q Consensus 161 s~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a 239 (339)
+.+.+....++++|.+|.++++++++ ..+.......++. +++.+|-|-.-+++ .|++.+||++|+.+ ++++|-.|
T Consensus 279 asdt~Yq~eiv~ag~lP~lv~Llqs~--~~plilasVaCIr-nisihplNe~lI~d-agfl~pLVrlL~~~dnEeiqchA 354 (550)
T KOG4224|consen 279 ASDTEYQREIVEAGSLPLLVELLQSP--MGPLILASVACIR-NISIHPLNEVLIAD-AGFLRPLVRLLRAGDNEEIQCHA 354 (550)
T ss_pred cccchhhhHHHhcCCchHHHHHHhCc--chhHHHHHHHHHh-hcccccCcccceec-ccchhHHHHHHhcCCchhhhhhH
Confidence 99999999999999999999999885 4677777788888 79999999988987 89999999999975 56799999
Q ss_pred HHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCc
Q 048113 240 VAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGD 319 (339)
Q Consensus 240 ~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 319 (339)
..+|++|+..+ ++.+..+.+.|++|.|.+++.++.-.+|..-..++..|+-...+ .......+++.-++.+...+.+
T Consensus 355 vstLrnLAass-e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~--k~~lld~gi~~iLIp~t~s~s~ 431 (550)
T KOG4224|consen 355 VSTLRNLAASS-EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND--KEALLDSGIIPILIPWTGSESE 431 (550)
T ss_pred HHHHHHHhhhh-hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc--HHHHhhcCCcceeecccCccch
Confidence 99999999865 45789999999999999999999999998888888888876553 3344455556655555556779
Q ss_pred ccchHHHHHHHHHHH
Q 048113 320 TVAGTTLRLVEEMIA 334 (339)
Q Consensus 320 ~~~~~a~~~l~~~v~ 334 (339)
++++.|...|.+.-.
T Consensus 432 Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 432 EVRGNAAAALINLSS 446 (550)
T ss_pred hhcccHHHHHHhhhh
Confidence 999998888776543
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.8e-29 Score=216.20 Aligned_cols=275 Identities=21% Similarity=0.269 Sum_probs=253.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhc
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKS 80 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~ 80 (339)
+++..+=++.+..+|..+..+|.+++.. +|+.++..|++|.|+.+++++++++|..++.++.+++. +..+|..+++.
T Consensus 170 ~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqa 248 (550)
T KOG4224|consen 170 EPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQA 248 (550)
T ss_pred hhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhc
Confidence 3566656788999999999999999986 99999999999999999999999999999999999999 79999999999
Q ss_pred C--ChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113 81 G--IVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH 158 (339)
Q Consensus 81 g--~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~ 158 (339)
| .+|.|+++++++++.++..|.-+|.||+.+..++..|.+.|++|.+++++++ ...+.......++.
T Consensus 249 ep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs-----------~~~plilasVaCIr 317 (550)
T KOG4224|consen 249 EPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQS-----------PMGPLILASVACIR 317 (550)
T ss_pred ccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhC-----------cchhHHHHHHHHHh
Confidence 8 9999999999999999999999999999999999999999999999999999 67777888889999
Q ss_pred hhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHH
Q 048113 159 NLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEH 238 (339)
Q Consensus 159 nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 238 (339)
|++..+-|-..|+++|++.+||++|+.++ +++++-+|..+|.|+......++..+.+ .|+||.+..++.++...+|+.
T Consensus 318 nisihplNe~lI~dagfl~pLVrlL~~~d-nEeiqchAvstLrnLAasse~n~~~i~e-sgAi~kl~eL~lD~pvsvqse 395 (550)
T KOG4224|consen 318 NISIHPLNEVLIADAGFLRPLVRLLRAGD-NEEIQCHAVSTLRNLAASSEHNVSVIRE-SGAIPKLIELLLDGPVSVQSE 395 (550)
T ss_pred hcccccCcccceecccchhHHHHHHhcCC-chhhhhhHHHHHHHHhhhhhhhhHHHhh-cCchHHHHHHHhcCChhHHHH
Confidence 99999999999999999999999999874 6789999999999443447788888887 999999999999999999999
Q ss_pred HHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccC
Q 048113 239 AVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCS 293 (339)
Q Consensus 239 a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 293 (339)
...|+..|+-.+ ..+..+.+.|.+|.|+.+..+.+..++-+|+.+|-||+...
T Consensus 396 isac~a~Lal~d--~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 396 ISACIAQLALND--NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred HHHHHHHHHhcc--ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence 999999999764 36799999999999999999999999999999999998753
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.8e-28 Score=223.49 Aligned_cols=309 Identities=18% Similarity=0.262 Sum_probs=255.5
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCCcchhhH
Q 048113 2 EEMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCS-QDYEAIEAALLSLLSLACGSERNKIR 76 (339)
Q Consensus 2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~~ 76 (339)
++..+..+.|+++..+..+...++.+... --...+..|+||.++.+|+. .++.++..|+|+|.|+|.++.+.-..
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 35677888899999999999999998765 34455566999999999974 57999999999999999999999999
Q ss_pred HhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHH
Q 048113 77 IVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIA 155 (339)
Q Consensus 77 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~ 155 (339)
++++|++|.++.++.+++..+++.|.|+|.|++.+. .+|..+.+.|++++|+.++..+ .......++.|
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~----------~~~~~lRn~tW 217 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKS----------DKLSMLRNATW 217 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccc----------cchHHHHHHHH
Confidence 999999999999999999999999999999999654 5699999999999999999883 33478889999
Q ss_pred HHHhhcCCCCChHHHHh-cCcHHHHHHHhhccccCchHHHHHHHHHHHhhc-CCHhhhHHHHhhCCcHHHHHHHhhcCCh
Q 048113 156 TLHNLSTCHQLISPIVS-SGVTYCLLQLIHSSEKSSGLTEKAIALLENIVS-SSEDALQEIAATCGAIRALVETIEEGSP 233 (339)
Q Consensus 156 ~L~nLs~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~-~~~~~~~~i~~~~g~i~~Lv~lL~~~~~ 233 (339)
+|.|||....-...+.. ..++|.|..++.+. ++.+...|++++. .++ ..++....+++ .|+++.|+++|.+.++
T Consensus 218 ~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~--D~~Vl~Da~WAls-yLsdg~ne~iq~vi~-~gvv~~LV~lL~~~~~ 293 (514)
T KOG0166|consen 218 TLSNLCRGKNPSPPFDVVAPILPALLRLLHST--DEEVLTDACWALS-YLTDGSNEKIQMVID-AGVVPRLVDLLGHSSP 293 (514)
T ss_pred HHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHH-HHhcCChHHHHHHHH-ccchHHHHHHHcCCCc
Confidence 99999996654444433 37899999999985 6899999999999 666 55666677776 9999999999999999
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhh-cCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHH
Q 048113 234 QCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSV-DGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQ 312 (339)
Q Consensus 234 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~ 312 (339)
.++..|+.++.|++..+.. ..+.++..|++|.|..++. +....++..|+|++.|+..+... +-+..++.+.++.++.
T Consensus 294 ~v~~PaLRaiGNIvtG~d~-QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~-qiqaVida~l~p~Li~ 371 (514)
T KOG0166|consen 294 KVVTPALRAIGNIVTGSDE-QTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQE-QIQAVIDANLIPVLIN 371 (514)
T ss_pred ccccHHHhhccceeeccHH-HHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHH-HHHHHHHcccHHHHHH
Confidence 9999999999999988644 6778899999999999988 55666899999999999987643 1233456677777776
Q ss_pred HHHhcCcccchHHH
Q 048113 313 EIDAEGDTVAGTTL 326 (339)
Q Consensus 313 ~~~~~~~~~~~~a~ 326 (339)
.+....-+.+-+|.
T Consensus 372 ~l~~~ef~~rKEAa 385 (514)
T KOG0166|consen 372 LLQTAEFDIRKEAA 385 (514)
T ss_pred HHhccchHHHHHHH
Confidence 66433333333343
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.95 E-value=2.1e-27 Score=204.43 Aligned_cols=314 Identities=18% Similarity=0.252 Sum_probs=254.8
Q ss_pred cHHHHHHHc-CCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHH
Q 048113 2 EEMLMDNLL-NGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRI 77 (339)
Q Consensus 2 ~~~Lv~~L~-s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i 77 (339)
.+.+|+.++ +...-.+.+|+|+|.|++.+ ..+.+++.|++|.++++|.+...++++.|.|+|+|++.+++..|..+
T Consensus 116 VpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~v 195 (526)
T COG5064 116 VPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYV 195 (526)
T ss_pred cHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHH
Confidence 467888885 55667789999999999997 44556789999999999999999999999999999999888889999
Q ss_pred hhcCChHHHHHhhcCCC--hhHHHHHHHHHHHHhcCc---cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHH
Q 048113 78 VKSGIVPVLLEVLQCQS--TTLIELTVAAMLILSSCL---ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKID 152 (339)
Q Consensus 78 ~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~nLs~~~---~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~ 152 (339)
.+.|++.+++.++.+.- ..+...+.|+|.||+... +.-..| +..+|.|.+++-+ .++++...
T Consensus 196 L~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys-----------~D~evlvD 262 (526)
T COG5064 196 LQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYS-----------RDPEVLVD 262 (526)
T ss_pred HhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhh-----------cCHHHHHH
Confidence 99999999999998764 478899999999999633 222222 4579999999988 89999999
Q ss_pred HHHHHHhhcCCCC-ChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC
Q 048113 153 AIATLHNLSTCHQ-LISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEG 231 (339)
Q Consensus 153 a~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~ 231 (339)
|++++..|+..+. -...+.+.|..+.|+.+|... +..++..++...+|.++.++.....+.+ .|+++.+-.+|.++
T Consensus 263 A~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~--sa~iqtPalR~vGNIVTG~D~QTqviI~-~G~L~a~~~lLs~~ 339 (526)
T COG5064 263 ACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE--SAKIQTPALRSVGNIVTGSDDQTQVIIN-CGALKAFRSLLSSP 339 (526)
T ss_pred HHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc--cccccCHHHHhhcCeeecCccceehhee-cccHHHHHHHhcCh
Confidence 9999999998664 456778899999999999874 6889999999999655666666666676 99999999999998
Q ss_pred ChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhh----hhhHHH
Q 048113 232 SPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQ----LKNELV 307 (339)
Q Consensus 232 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~----~~~~~~ 307 (339)
...++..|||.+.|++..+.+ ..+.+++++.+|+|+.++...+-.++..|+|++.|...++.- +.+. +..+.+
T Consensus 340 ke~irKEaCWTiSNITAGnte-qiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~--~PD~iryLv~qG~I 416 (526)
T COG5064 340 KENIRKEACWTISNITAGNTE-QIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLN--RPDIIRYLVSQGFI 416 (526)
T ss_pred hhhhhhhhheeecccccCCHH-HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccC--CchHHHHHHHccch
Confidence 889999999999999988654 678889999999999999999999999999999999887641 2221 222333
Q ss_pred HHHHHHHHhcCcccchHHHHHHHHHHH
Q 048113 308 EQIMQEIDAEGDTVAGTTLRLVEEMIA 334 (339)
Q Consensus 308 ~~i~~~~~~~~~~~~~~a~~~l~~~v~ 334 (339)
..+-..+.+-.-++-+.|...+..+..
T Consensus 417 kpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 417 KPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred hHHHHHHhccCccchhhhHHHHHHHHh
Confidence 332222223334456667777766653
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.93 E-value=7.3e-25 Score=188.86 Aligned_cols=277 Identities=18% Similarity=0.240 Sum_probs=238.4
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCH--HHHHHHHHHHHHhccCC--cchh
Q 048113 2 EEMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDY--EAIEAALLSLLSLACGS--ERNK 74 (339)
Q Consensus 2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~--~~~~~A~~~L~~Ls~~~--~~~~ 74 (339)
.+.++.+|.+++.+++..|+|+|.|++.+ +|+.+.+.|++.+++.++.++.+ .+.+++.|+|.|||.+. +...
T Consensus 159 VPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w 238 (526)
T COG5064 159 VPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDW 238 (526)
T ss_pred hHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCch
Confidence 36789999999999999999999999986 99999999999999999887644 78899999999999972 2333
Q ss_pred hHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHH
Q 048113 75 IRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDA 153 (339)
Q Consensus 75 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a 153 (339)
..+ ..++|.|.+++.+.++++...|+|++..|+..+ ++-..|.+.|..++|+.+|.+ .+..++..|
T Consensus 239 ~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~-----------~sa~iqtPa 305 (526)
T COG5064 239 SNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSH-----------ESAKIQTPA 305 (526)
T ss_pred HHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcC-----------ccccccCHH
Confidence 333 347899999999999999999999999999765 456778899999999999999 788899999
Q ss_pred HHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCC
Q 048113 154 IATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGS 232 (339)
Q Consensus 154 ~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~ 232 (339)
++.+.|+.. ++.-...++.+|+++.+-.+|.++ .+.++..+|+++.|..+.+.+..+.+.+ ++.+|+|+++|...+
T Consensus 306 lR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~--ke~irKEaCWTiSNITAGnteqiqavid-~nliPpLi~lls~ae 382 (526)
T COG5064 306 LRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP--KENIRKEACWTISNITAGNTEQIQAVID-ANLIPPLIHLLSSAE 382 (526)
T ss_pred HHhhcCeeecCccceehheecccHHHHHHHhcCh--hhhhhhhhheeecccccCCHHHHHHHHh-cccchHHHHHHHHHH
Confidence 999999977 455567788999999999999885 4689999999999777777788888887 999999999999988
Q ss_pred hHHHHHHHHHHHHhhccC--chhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCC
Q 048113 233 PQCKEHAVAILLLICKSC--RDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSS 294 (339)
Q Consensus 233 ~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 294 (339)
-.++..|||++.|..... .++....+.+.|++.+|..++.-.+-++-+.++.++.++-+.++
T Consensus 383 ~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge 446 (526)
T COG5064 383 YKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGE 446 (526)
T ss_pred HHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhh
Confidence 899999999999997643 23455667889999999999998888888888999988876553
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.90 E-value=7.3e-21 Score=184.44 Aligned_cols=309 Identities=18% Similarity=0.214 Sum_probs=239.1
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113 2 EEMLMDNLLNGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK 79 (339)
Q Consensus 2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~ 79 (339)
-+.|++.|.+++.+....++.+|.+++.. ++..+.+.|+|++|++++++++.+++..+++.|.|||. ++..|..|++
T Consensus 292 V~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~ 370 (708)
T PF05804_consen 292 VSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSF-DPELRSQMVS 370 (708)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc-CHHHHHHHHH
Confidence 36789999999999999999999999976 99999999999999999999999999999999999999 7999999999
Q ss_pred cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHh
Q 048113 80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHN 159 (339)
Q Consensus 80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~n 159 (339)
.|++|.|+.+|.++ ..+..++.+|+++|.++++|..+...+++|.+++++-+. ....+...++.++.|
T Consensus 371 ~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~----------~~~~v~~eliaL~iN 438 (708)
T PF05804_consen 371 LGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLEN----------SEEEVQLELIALLIN 438 (708)
T ss_pred CCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhC----------CCccccHHHHHHHHH
Confidence 99999999999865 466779999999999999999999999999999987663 345555567777778
Q ss_pred hcCCCCChHHHHhcCcHHHHHHHh-------------------------------------hccccCchHHHHHHHHHHH
Q 048113 160 LSTCHQLISPIVSSGVTYCLLQLI-------------------------------------HSSEKSSGLTEKAIALLEN 202 (339)
Q Consensus 160 Ls~~~~~~~~i~~~g~i~~Lv~ll-------------------------------------~~~~~~~~~~~~a~~~L~n 202 (339)
||.++.+.+.+++.|+++.|++.. ..+ ++++....|+++|+
T Consensus 439 La~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~-~~ee~~vE~LGiLa- 516 (708)
T PF05804_consen 439 LALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSG-DSEEFVVECLGILA- 516 (708)
T ss_pred HhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHH-
Confidence 888777777777776666655432 222 24667788999999
Q ss_pred hhcCCHhhhHHHHhhCCcHHHHHHHhhcC--ChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcC--CHHH
Q 048113 203 IVSSSEDALQEIAATCGAIRALVETIEEG--SPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDG--TWRA 278 (339)
Q Consensus 203 ~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~ 278 (339)
|+...+.....++++.+.+|-|.++|..+ .+.+...++..+..+|.+ ++....+.+.|.++.|+++++.. +...
T Consensus 517 NL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d--~~~A~lL~~sgli~~Li~LL~~kqeDdE~ 594 (708)
T PF05804_consen 517 NLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD--PECAPLLAKSGLIPTLIELLNAKQEDDEI 594 (708)
T ss_pred hcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC--HHHHHHHHhCChHHHHHHHHHhhCchHHH
Confidence 67776667777777689999999999875 356777788888888866 44667778899999999998754 5666
Q ss_pred HHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH-hcCcccchHHHHHH
Q 048113 279 KNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID-AEGDTVAGTTLRLV 329 (339)
Q Consensus 279 ~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~a~~~l 329 (339)
...-+.+...|-.+.+- +...+....+...+-.+. -.+.+++..|-.+|
T Consensus 595 VlQil~~f~~ll~h~~t--r~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~L 644 (708)
T PF05804_consen 595 VLQILYVFYQLLFHEET--REVLLKETEIPAYLIDLMHDKNAEIRKVCDNAL 644 (708)
T ss_pred HHHHHHHHHHHHcChHH--HHHHHhccchHHHHHHHhcCCCHHHHHHHHHHH
Confidence 66666766666665542 222223233333222222 22355666555544
No 10
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.89 E-value=1.8e-21 Score=184.76 Aligned_cols=308 Identities=19% Similarity=0.189 Sum_probs=245.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcc--hhhHH
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSER--NKIRI 77 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~--~~~~i 77 (339)
+..+.+|.+.++.++..|+..+..++.. .+..+.+.|+|+.|+.+|.+...+++.+|+++|+||..++.. |+..|
T Consensus 236 pe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai 315 (717)
T KOG1048|consen 236 PEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAI 315 (717)
T ss_pred HHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhh
Confidence 3568899999999999999999999986 778888999999999999999999999999999999998665 99999
Q ss_pred hhcCChHHHHHhhcC-CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHH-HhcCCCCCCCCc--cCCCCHHHHHHH
Q 048113 78 VKSGIVPVLLEVLQC-QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVE-ILNGDLADDDNS--YGRISVQAKIDA 153 (339)
Q Consensus 78 ~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~-ll~~~~~~~~~~--~~~~~~~~~~~a 153 (339)
.+.++|+.++++|.. .|.++++....+||||++++..|..|+... ++.|.. ++--.+.|++.+ ..-.+.++..++
T Consensus 316 ~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~a-l~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~ 394 (717)
T KOG1048|consen 316 KELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSA-LSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNV 394 (717)
T ss_pred hhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHH-HHHHHHhhcccccccCCCCcccccccceeeehh
Confidence 999999999999987 589999999999999999988888776554 555555 333344444433 223356778899
Q ss_pred HHHHHhhcC-CCCChHHHHhc-CcHHHHHHHhhc----cccCchHHHHHHHHHHHhhcCCHh-----h------------
Q 048113 154 IATLHNLST-CHQLISPIVSS-GVTYCLLQLIHS----SEKSSGLTEKAIALLENIVSSSED-----A------------ 210 (339)
Q Consensus 154 ~~~L~nLs~-~~~~~~~i~~~-g~i~~Lv~ll~~----~~~~~~~~~~a~~~L~n~l~~~~~-----~------------ 210 (339)
..+|.|++. ..+.++.+.++ |.|+.|+..++. +..+.+..++|+++|. |++..-+ .
T Consensus 395 tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilR-NLSYrl~~Evp~~~~~~~~~~~~~~ 473 (717)
T KOG1048|consen 395 TGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILR-NLSYRLEAEVPPKYRQVLANIARLP 473 (717)
T ss_pred hhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHh-hcCchhhhhcCHhhhhHhhcccccc
Confidence 999999988 78999999998 999999988863 2235788999999999 6763211 0
Q ss_pred ---------------hHHHHh---------------------hCCcHHHHHHHhh-cCChHHHHHHHHHHHHhhccCch-
Q 048113 211 ---------------LQEIAA---------------------TCGAIRALVETIE-EGSPQCKEHAVAILLLICKSCRD- 252 (339)
Q Consensus 211 ---------------~~~i~~---------------------~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~- 252 (339)
+.+..+ +..+|..=..+|. +.++.+.|.++++|.|++.....
T Consensus 474 ~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~ 553 (717)
T KOG1048|consen 474 GVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTW 553 (717)
T ss_pred cCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcc
Confidence 001000 0001222233444 35688999999999999986532
Q ss_pred --hHHHHH-HhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH
Q 048113 253 --KYRSSI-LKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID 315 (339)
Q Consensus 253 --~~~~~~-~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 315 (339)
..+..+ .++.++|+|+++++.+++.+...++.+|+||+.+.. +++.+...++..++..+.
T Consensus 554 ~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r---nk~ligk~a~~~lv~~Lp 616 (717)
T KOG1048|consen 554 SEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR---NKELIGKYAIPDLVRCLP 616 (717)
T ss_pred hhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch---hhhhhhcchHHHHHHhCc
Confidence 355555 678999999999999999999999999999999875 778889999999999886
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.89 E-value=6.2e-21 Score=184.94 Aligned_cols=252 Identities=21% Similarity=0.281 Sum_probs=209.6
Q ss_pred HHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhc
Q 048113 53 YEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILN 132 (339)
Q Consensus 53 ~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~ 132 (339)
..+...+...|.||+. ++.+...+.+.|+++.|+++|++++.++...++.+|.+||...+||..+.+.|++++|+++++
T Consensus 263 eqLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~ 341 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP 341 (708)
T ss_pred HHHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc
Confidence 3555678889999999 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhH
Q 048113 133 GDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQ 212 (339)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~ 212 (339)
+ ++.+.+..++++|.|||.+++.|..+++.|++|.|+.+|.++ ..+..|+.+|. +++..+++|.
T Consensus 342 s-----------~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~----~~~~val~iLy-~LS~dd~~r~ 405 (708)
T PF05804_consen 342 S-----------ENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP----NFREVALKILY-NLSMDDEARS 405 (708)
T ss_pred C-----------CCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC----chHHHHHHHHH-HhccCHhhHH
Confidence 9 789999999999999999999999999999999999999863 45677999999 8999999999
Q ss_pred HHHhhCCcHHHHHHHhhc-CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113 213 EIAATCGAIRALVETIEE-GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 213 ~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 291 (339)
.+.. .+++|.+++++-+ +++.+...++..+.|++.+. .+.+.+.+.|+++.|++......+.. ...+++|++.
T Consensus 406 ~f~~-TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~--rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~ 479 (708)
T PF05804_consen 406 MFAY-TDCIPQLMQMLLENSEEEVQLELIALLINLALNK--RNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQ 479 (708)
T ss_pred HHhh-cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH--HHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHh
Confidence 9987 7899999997665 55667777888999999874 45688888899999999865544333 2358899998
Q ss_pred cCCCcchhhhhhhHHHHHHHHHHH-hcCcccchHHHHHHH
Q 048113 292 CSSFGSRSKQLKNELVEQIMQEID-AEGDTVAGTTLRLVE 330 (339)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~a~~~l~ 330 (339)
+.. ..+....+.+.+++..+. .++++..-.+...|+
T Consensus 480 h~~---~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLa 516 (708)
T PF05804_consen 480 HDG---PLKELFVDFIGDLAKIVSSGDSEEFVVECLGILA 516 (708)
T ss_pred cCc---hHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence 764 344455677777777764 233433333443333
No 12
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.87 E-value=5.1e-21 Score=188.98 Aligned_cols=264 Identities=19% Similarity=0.211 Sum_probs=227.4
Q ss_pred HHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccC------------CHHHHHHHHHHHHHhccCCcchhhHHhhc-C
Q 048113 17 QIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQ------------DYEAIEAALLSLLSLACGSERNKIRIVKS-G 81 (339)
Q Consensus 17 ~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~------------~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~-g 81 (339)
.+.|+..|-.++.+ +|+.+.+.|+++.+.+++.-+ +..+|.+|.++|-||++++..|+..++.. |
T Consensus 315 lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg 394 (2195)
T KOG2122|consen 315 LCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG 394 (2195)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence 34788888888876 999999999999999987632 33689999999999999999999988865 9
Q ss_pred ChHHHHHhhcCCChhHHHHHHHHHHHHh-cCccc-hHHHHhcchHHHHHH-HhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113 82 IVPVLLEVLQCQSTTLIELTVAAMLILS-SCLEN-KLEIASSGAIQRLVE-ILNGDLADDDNSYGRISVQAKIDAIATLH 158 (339)
Q Consensus 82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~-~~~i~~~g~i~~Lv~-ll~~~~~~~~~~~~~~~~~~~~~a~~~L~ 158 (339)
.++.+|..|.+..+++....+.+|.||+ ..+.+ |..+.+.|.+..|+. .+++ ......+..+.+||
T Consensus 395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~-----------~kEsTLKavLSALW 463 (2195)
T KOG2122|consen 395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRN-----------KKESTLKAVLSALW 463 (2195)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHh-----------cccchHHHHHHHHh
Confidence 9999999999999899998899999998 55555 777889999999988 4555 56678889999999
Q ss_pred hhcC-CCCChHHHHhc-CcHHHHHHHhhcc--ccCchHHHHHHHHHHHhhc----CCHhhhHHHHhhCCcHHHHHHHhhc
Q 048113 159 NLST-CHQLISPIVSS-GVTYCLLQLIHSS--EKSSGLTEKAIALLENIVS----SSEDALQEIAATCGAIRALVETIEE 230 (339)
Q Consensus 159 nLs~-~~~~~~~i~~~-g~i~~Lv~ll~~~--~~~~~~~~~a~~~L~n~l~----~~~~~~~~i~~~~g~i~~Lv~lL~~ 230 (339)
||+. ..+||..|++. |++..||.+|... ...-.+++.+-++|. |++ .++..|+.+.+ .+++..|+++|++
T Consensus 464 NLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILR-NVSS~IAt~E~yRQILR~-~NCLq~LLQ~LKS 541 (2195)
T KOG2122|consen 464 NLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILR-NVSSLIATCEDYRQILRR-HNCLQTLLQHLKS 541 (2195)
T ss_pred hhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHH-HHHhHhhccchHHHHHHH-hhHHHHHHHHhhh
Confidence 9987 67999999998 9999999999764 234578888999999 443 45666666665 8999999999999
Q ss_pred CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCC
Q 048113 231 GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSS 294 (339)
Q Consensus 231 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 294 (339)
.+-.+..++|++||||+..++. .++.+++.|+++.|..++++....+-+-++.+|+||-.+.+
T Consensus 542 ~SLTiVSNaCGTLWNLSAR~p~-DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 542 HSLTIVSNACGTLWNLSARSPE-DQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred cceEEeecchhhhhhhhcCCHH-HHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 9999999999999999998755 78999999999999999999999999999999999988774
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=7.4e-18 Score=145.56 Aligned_cols=305 Identities=17% Similarity=0.228 Sum_probs=249.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhcc--CCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHH
Q 048113 11 NGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCS--QDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLE 88 (339)
Q Consensus 11 s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~ 88 (339)
+++.....+++.+|..++... ..+.+..+...++.+|.. ++.++....++.+..-|..++.||+.+.+.++.|.+..
T Consensus 118 ~~~~~~l~ksL~al~~lt~~q-pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~ 196 (461)
T KOG4199|consen 118 SPNESVLKKSLEAINSLTHKQ-PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQ 196 (461)
T ss_pred CCchhHHHHHHHHHHHhhcCC-cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHH
Confidence 567777888888887777652 234566777788887754 57788888888998888889999999999999999998
Q ss_pred hhcCCCh-hHHHHHHHHHHHHhcCccchH----------HHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113 89 VLQCQST-TLIELTVAAMLILSSCLENKL----------EIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL 157 (339)
Q Consensus 89 lL~~~~~-~~~~~a~~~L~nLs~~~~~~~----------~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L 157 (339)
.|..... .+...+++++.-|..+++.|. .|+..|+...|+..++-. -++++...++.+|
T Consensus 197 ~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~----------~dp~~L~~l~~tl 266 (461)
T KOG4199|consen 197 VLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAG----------IDPDSLVSLSTTL 266 (461)
T ss_pred HHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHcc----------CCccHHHHHHHHH
Confidence 8876644 478888899999998877653 466778899999999886 5799999999999
Q ss_pred HhhcCCCCChHHHHhcCcHHHHHHHhhccccC--chHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc--CCh
Q 048113 158 HNLSTCHQLISPIVSSGVTYCLLQLIHSSEKS--SGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE--GSP 233 (339)
Q Consensus 158 ~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~--~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~--~~~ 233 (339)
..|+..++.++.|.+.|+++.|+.++.++..+ ..+...|+..|. -++.++.++..|++ .|+.+.++.++.. ++|
T Consensus 267 ~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLr-alAG~DsvKs~IV~-~gg~~~ii~l~~~h~~~p 344 (461)
T KOG4199|consen 267 KALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLR-ALAGSDSVKSTIVE-KGGLDKIITLALRHSDDP 344 (461)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHH-HHhCCCchHHHHHH-hcChHHHHHHHHHcCCCh
Confidence 99999999999999999999999999885321 235577889999 89999999999998 8999999997753 679
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCC--HHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHH
Q 048113 234 QCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGT--WRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIM 311 (339)
Q Consensus 234 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~ 311 (339)
.+-+.++.+++-+|...++ ....+++.|+-..-++-++... ..+|++|+++++|+...+.. +++..-..+++.++
T Consensus 345 ~Vi~~~~a~i~~l~LR~pd-hsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~--~~~~~l~~GiE~Li 421 (461)
T KOG4199|consen 345 LVIQEVMAIISILCLRSPD-HSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAE--NRTILLANGIEKLI 421 (461)
T ss_pred HHHHHHHHHHHHHHhcCcc-hHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhh--ccchHHhccHHHHH
Confidence 9999999999999988766 5667788887777777666543 55789999999999875543 56677788899999
Q ss_pred HHHHhcCcccchHHHHHHHH
Q 048113 312 QEIDAEGDTVAGTTLRLVEE 331 (339)
Q Consensus 312 ~~~~~~~~~~~~~a~~~l~~ 331 (339)
+.-..+++..+..|...|.+
T Consensus 422 ~~A~~~h~tce~~akaALRD 441 (461)
T KOG4199|consen 422 RTAKANHETCEAAAKAALRD 441 (461)
T ss_pred HHHHhcCccHHHHHHHHHHh
Confidence 88888888888877777654
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=6.9e-16 Score=133.48 Aligned_cols=279 Identities=16% Similarity=0.172 Sum_probs=227.3
Q ss_pred HHHHHHc--CCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCCcc-----
Q 048113 4 MLMDNLL--NGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCS-QDYEAIEAALLSLLSLACGSER----- 72 (339)
Q Consensus 4 ~Lv~~L~--s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~----- 72 (339)
.++++|. +++.++.......++.-+.. +|+.|.+.++.+.+...|.. +...+.+.+.++++.|..+ ++
T Consensus 149 vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~d-DDiRV~f 227 (461)
T KOG4199|consen 149 VVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTD-DDIRVVF 227 (461)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCC-Cceeeec
Confidence 4566664 56777788888888887654 99999999999999976654 4556888899999999983 43
Q ss_pred -----hhhHHhhcCChHHHHHhhcCC-ChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCC
Q 048113 73 -----NKIRIVKSGIVPVLLEVLQCQ-STTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRIS 146 (339)
Q Consensus 73 -----~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~ 146 (339)
+...|++.|+...|+..++.. +|.....++.+|..|+-.++.+..|.+.|++..|++.+.+.+.+ ++
T Consensus 228 g~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~-------~~ 300 (461)
T KOG4199|consen 228 GQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQ-------GN 300 (461)
T ss_pred chhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchh-------hH
Confidence 345677888999999998765 68888889999999999888889999999999999999874211 23
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHH
Q 048113 147 VQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVE 226 (339)
Q Consensus 147 ~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~ 226 (339)
....+.++..|..|+.++.++..|++.|+.+.++.++....+++.+.+.++.+++-++-..|++...+++ .|+-...++
T Consensus 301 r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie-~G~a~~avq 379 (461)
T KOG4199|consen 301 RTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIE-AGAADLAVQ 379 (461)
T ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHh-cchHHHHHH
Confidence 3455678999999999999999999999999999999887778888999998888444567888888887 899999999
Q ss_pred HhhcC--ChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccC
Q 048113 227 TIEEG--SPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCS 293 (339)
Q Consensus 227 lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 293 (339)
.++.. ...+|.++++.+.|+...+.+ +++.++. .++..|+...+...+.....|..+|+-|-.+.
T Consensus 380 AmkahP~~a~vQrnac~~IRNiv~rs~~-~~~~~l~-~GiE~Li~~A~~~h~tce~~akaALRDLGc~v 446 (461)
T KOG4199|consen 380 AMKAHPVAAQVQRNACNMIRNIVVRSAE-NRTILLA-NGIEKLIRTAKANHETCEAAAKAALRDLGCDV 446 (461)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHhhhh-ccchHHh-ccHHHHHHHHHhcCccHHHHHHHHHHhcCcch
Confidence 99853 367899999999999988654 6665554 56888888888888888888888999886544
No 15
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.71 E-value=2.4e-15 Score=130.29 Aligned_cols=196 Identities=19% Similarity=0.182 Sum_probs=170.5
Q ss_pred HhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccc
Q 048113 36 VERGIIAPLISMLCS-QDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN 114 (339)
Q Consensus 36 ~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~ 114 (339)
.+.+-++.|+.+|+. .+|.+++.|+.++.+.+. .+.++..+.+.|+++.+..+|.++++.+++.|+.+|.|++.+.++
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 566778999999985 589999999999999999 799999999999999999999999999999999999999999998
Q ss_pred hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHH
Q 048113 115 KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTE 194 (339)
Q Consensus 115 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 194 (339)
+..|.. .++.+++...+.. -+..++..++++|.||+..++.+..+.. .++.++.+|..+ +..++.
T Consensus 88 ~~~Ik~--~i~~Vc~~~~s~~---------lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G--~~~~k~ 152 (254)
T PF04826_consen 88 QEQIKM--YIPQVCEETVSSP---------LNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSG--SEKTKV 152 (254)
T ss_pred HHHHHH--HHHHHHHHHhcCC---------CCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcC--ChHHHH
Confidence 887743 5777777655521 4788999999999999988877777644 799999999986 578999
Q ss_pred HHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC-ChHHHHHHHHHHHHhhcc
Q 048113 195 KAIALLENIVSSSEDALQEIAATCGAIRALVETIEEG-SPQCKEHAVAILLLICKS 249 (339)
Q Consensus 195 ~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~ 249 (339)
+++.+|. +++.++...+.+.. +++...++.+++.. +.++...++....|+...
T Consensus 153 ~vLk~L~-nLS~np~~~~~Ll~-~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 153 QVLKVLV-NLSENPDMTRELLS-AQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHH-HhccCHHHHHHHHh-ccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 9999999 89999999999987 89999999999875 577788888888998654
No 16
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.70 E-value=9.1e-16 Score=146.30 Aligned_cols=277 Identities=21% Similarity=0.202 Sum_probs=209.3
Q ss_pred ChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhc---CccchH
Q 048113 40 IIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSS---CLENKL 116 (339)
Q Consensus 40 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~---~~~~~~ 116 (339)
-+|..+.+|.+.++.+|.+|+.-+.++|+++.+.|..+.+.|+|+.||.+|.+...+++..|+++|.||.. +++++-
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 46778999999999999999999999999999999999999999999999999999999999999999996 335789
Q ss_pred HHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccc--------c
Q 048113 117 EIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSE--------K 188 (339)
Q Consensus 117 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~--------~ 188 (339)
.|.+.++|+.++++++.. .|.++++....+||||++++..+..++.. +++.|.+-+-.+. +
T Consensus 314 ai~~~~Gv~~l~~~Lr~t----------~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~ 382 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHT----------QDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAP 382 (717)
T ss_pred hhhhcCChHHHHHHHHhh----------cchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcc
Confidence 999999999999999875 79999999999999999997777766554 4666665553321 1
Q ss_pred ----CchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc------CChHHHHHHHHHHHHhhccCc-------
Q 048113 189 ----SSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE------GSPQCKEHAVAILLLICKSCR------- 251 (339)
Q Consensus 189 ----~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~~l~~~~~------- 251 (339)
...+..++.++|.|..+...+.|+++.+..|.|+.|+..+++ .+.+..|+++.+|.|++-.-.
T Consensus 383 ~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~ 462 (717)
T KOG1048|consen 383 RKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKY 462 (717)
T ss_pred cccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhh
Confidence 256778999999965556899999999888999999999974 356778999999999863211
Q ss_pred ------------------------hhHHHH---------------------HHhcCChHHHHHh-hhcCCHHHHHHHHHH
Q 048113 252 ------------------------DKYRSS---------------------ILKEGVMPGLLQL-SVDGTWRAKNMARDL 285 (339)
Q Consensus 252 ------------------------~~~~~~---------------------~~~~g~i~~L~~l-l~~~~~~~~~~A~~~ 285 (339)
.+-++. ++.-.++.+=..+ -.+.++.+.+.++++
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGa 542 (717)
T KOG1048|consen 463 RQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGA 542 (717)
T ss_pred hhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhh
Confidence 011110 0000122221222 245678889999999
Q ss_pred HHHHhccCCCcchhhh------hhhHHHHHHHHHHHhcCcccchHHHHHH
Q 048113 286 LLLLRDCSSFGSRSKQ------LKNELVEQIMQEIDAEGDTVAGTTLRLV 329 (339)
Q Consensus 286 L~~l~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~a~~~l 329 (339)
|+|++-+.+- -... .+..++..++..+..+++++-..+..+|
T Consensus 543 LQNltA~~~~--~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~L 590 (717)
T KOG1048|consen 543 LQNLTAGLWT--WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGAL 590 (717)
T ss_pred HhhhhccCCc--chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHH
Confidence 9999876542 1111 3455667777777777766654444443
No 17
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.69 E-value=8.1e-15 Score=130.64 Aligned_cols=324 Identities=14% Similarity=0.116 Sum_probs=246.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccC-------CHHHHHHHHHHHHHhccCCcc
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQ-------DYEAIEAALLSLLSLACGSER 72 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~A~~~L~~Ls~~~~~ 72 (339)
|.|.....|.+.++-....++|+|++.+ +|..+.+.|+-..++..|+.. +.+....+...|.|...+++.
T Consensus 90 e~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~ 169 (604)
T KOG4500|consen 90 ELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRE 169 (604)
T ss_pred HHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHH
Confidence 4566667788889999999999999986 999999999977777777652 336777788899999998889
Q ss_pred hhhHHhhcCChHHHHHhhcC--CC--------------------------------------------hhHHHHHHHHHH
Q 048113 73 NKIRIVKSGIVPVLLEVLQC--QS--------------------------------------------TTLIELTVAAML 106 (339)
Q Consensus 73 ~~~~i~~~g~i~~Lv~lL~~--~~--------------------------------------------~~~~~~a~~~L~ 106 (339)
.+....+.|+++.|...+.= .+ +++.+.....+.
T Consensus 170 l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila 249 (604)
T KOG4500|consen 170 LRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILA 249 (604)
T ss_pred HHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHH
Confidence 99999999999988765521 11 234555566666
Q ss_pred HHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcC-cHHHHHHHhhc
Q 048113 107 ILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSG-VTYCLLQLIHS 185 (339)
Q Consensus 107 nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g-~i~~Lv~ll~~ 185 (339)
..+.++..+-.+++.|.++.++.++++..+. ...++.......++....-|...++.-..+...| +++.++..+.+
T Consensus 250 ~~aend~Vkl~la~~gl~e~~~~lv~~~k~~---t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S 326 (604)
T KOG4500|consen 250 KAAENDLVKLSLAQNGLLEDSIDLVRNMKDF---TKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRS 326 (604)
T ss_pred HHhcCcceeeehhhcchHHHHHHHHHhcccc---cchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcC
Confidence 6677777777777888899999888873110 0001122233344444455555666666676666 88888888887
Q ss_pred cccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc-----CChHHHHHHHHHHHHhhccCchhHHHHHHh
Q 048113 186 SEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE-----GSPQCKEHAVAILLLICKSCRDKYRSSILK 260 (339)
Q Consensus 186 ~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 260 (339)
+ +.+++..+.-+++ |+++.+.+...+++ .|.+..|++.+.. ++.+.+..++.+|+|+...-+ .+..+..
T Consensus 327 ~--d~~l~t~g~Laig-NfaR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~--nka~~~~ 400 (604)
T KOG4500|consen 327 D--DSNLITMGSLAIG-NFARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS--NKAHFAP 400 (604)
T ss_pred C--chhHHHHHHHHHH-hhhccchHHHHHHH-HHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC--chhhccc
Confidence 5 4677888888899 78999998889997 7999999997753 568899999999999997643 5788999
Q ss_pred cCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH-hcCcccchHHHHHHHHHHHH
Q 048113 261 EGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID-AEGDTVAGTTLRLVEEMIAK 335 (339)
Q Consensus 261 ~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~a~~~l~~~v~~ 335 (339)
+|+.+.+..+++...|+++.+-.+.++++.+..+|..-.-.-..+.+++++.+.. .|-..+.++-.|++.++|+-
T Consensus 401 aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkH 476 (604)
T KOG4500|consen 401 AGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKH 476 (604)
T ss_pred cchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHh
Confidence 9999999999999999999999999999998765422121223578888888876 45577888899999999864
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.69 E-value=4.5e-15 Score=128.62 Aligned_cols=185 Identities=21% Similarity=0.216 Sum_probs=162.1
Q ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113 3 EMLMDNLL-NGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK 79 (339)
Q Consensus 3 ~~Lv~~L~-s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~ 79 (339)
+.|+.+|+ +.+|.++..|..++.+.+.. ++..+.+.|+++.+..+|+++++.++..|+++|.|++. +.+|+..+-.
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~-~~en~~~Ik~ 93 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV-NDENQEQIKM 93 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC-ChhhHHHHHH
Confidence 46788888 57999999999999999876 99999999999999999999999999999999999999 7888887743
Q ss_pred cCChHHHHHhhcCC--ChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113 80 SGIVPVLLEVLQCQ--STTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL 157 (339)
Q Consensus 80 ~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L 157 (339)
.++.+++.+.+. +..++..++++|.||+..++.+..+.. .++.++.+|.. ++..++..++++|
T Consensus 94 --~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~-----------G~~~~k~~vLk~L 158 (254)
T PF04826_consen 94 --YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSS-----------GSEKTKVQVLKVL 158 (254)
T ss_pred --HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHc-----------CChHHHHHHHHHH
Confidence 577777755443 567899999999999988887777744 79999999999 8999999999999
Q ss_pred HhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhc
Q 048113 158 HNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVS 205 (339)
Q Consensus 158 ~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~ 205 (339)
.|||.++.+.+.+..+.++..++.++.+.. +.++...++..+. ++.
T Consensus 159 ~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~-~~~~l~~~l~~~~-ni~ 204 (254)
T PF04826_consen 159 VNLSENPDMTRELLSAQVLSSFLSLFNSSE-SKENLLRVLTFFE-NIN 204 (254)
T ss_pred HHhccCHHHHHHHHhccchhHHHHHHccCC-ccHHHHHHHHHHH-HHH
Confidence 999999999999999999999999998863 5788888888888 453
No 19
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.68 E-value=9.4e-14 Score=133.14 Aligned_cols=274 Identities=18% Similarity=0.212 Sum_probs=219.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK 79 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~ 79 (339)
+.|...|.++++.+|..+++.|+++..+ ....+.+.++++.++..+.+++.++...|+.+|..++. .+.....++.
T Consensus 80 ~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~ 158 (503)
T PF10508_consen 80 PFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGLEQLFD 158 (503)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhHHHHhC
Confidence 5678888999999999999999999875 45667789999999999999999999999999999999 5777788889
Q ss_pred cCChHHHHHhhcCCChhHHHHHHHHHHHHhcC-ccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113 80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSC-LENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH 158 (339)
Q Consensus 80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~ 158 (339)
.+.++.|..++..+++.+|..+..++.+++.. ++....+.+.|.++.+++-+++ +|.-++.+++.+|.
T Consensus 159 ~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~-----------dDiLvqlnalell~ 227 (503)
T PF10508_consen 159 SNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS-----------DDILVQLNALELLS 227 (503)
T ss_pred cchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC-----------ccHHHHHHHHHHHH
Confidence 99999999999998889999999999999864 4557777789999999999999 89999999999999
Q ss_pred hhcCCCCChHHHHhcCcHHHHHHHhhccccCc---hHH-HHHHHHHHHhhcC-CHhhhHHHHhhCCcHHHHHHHhhcCCh
Q 048113 159 NLSTCHQLISPIVSSGVTYCLLQLIHSSEKSS---GLT-EKAIALLENIVSS-SEDALQEIAATCGAIRALVETIEEGSP 233 (339)
Q Consensus 159 nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~---~~~-~~a~~~L~n~l~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~ 233 (339)
.|+..+.+...+.+.|+++.|..++.+...++ .+. -..+...+ +++. .+...... ...++..+.+++.+.++
T Consensus 228 ~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g-~la~~~~~~v~~~--~p~~~~~l~~~~~s~d~ 304 (503)
T PF10508_consen 228 ELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG-NLARVSPQEVLEL--YPAFLERLFSMLESQDP 304 (503)
T ss_pred HHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH-HHHhcChHHHHHH--HHHHHHHHHHHhCCCCh
Confidence 99999999999999999999999997753322 222 22224555 4444 33322111 13456667777788889
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHH-Hh-cCChHH----HHHhhhcCCHHHHHHHHHHHHHHhccC
Q 048113 234 QCKEHAVAILLLICKSCRDKYRSSI-LK-EGVMPG----LLQLSVDGTWRAKNMARDLLLLLRDCS 293 (339)
Q Consensus 234 ~~~~~a~~~L~~l~~~~~~~~~~~~-~~-~g~i~~----L~~ll~~~~~~~~~~A~~~L~~l~~~~ 293 (339)
..+..|..++..++.. .+++..+ .. .+.++. ......+++.++|.++..++.++-...
T Consensus 305 ~~~~~A~dtlg~igst--~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~ 368 (503)
T PF10508_consen 305 TIREVAFDTLGQIGST--VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSG 368 (503)
T ss_pred hHHHHHHHHHHHHhCC--HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcC
Confidence 9999999999999966 4567777 43 334444 444456678889999999999996544
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.65 E-value=3e-13 Score=129.68 Aligned_cols=310 Identities=16% Similarity=0.195 Sum_probs=238.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSG 81 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g 81 (339)
+.++..|.+.+.+....++.+|..+... ....+ ..+..+.|...|.++++.++..+++.+.++..+++.....+.+.+
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSALSPDSL-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 4467778888888888899999998887 33333 667778888999999999999999999999996555566777889
Q ss_pred ChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhc
Q 048113 82 IVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS 161 (339)
Q Consensus 82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs 161 (339)
.++.++.++.+++.++...|..+|.+++..+.....+.+.+.++.|.+++.+ .+..+|..+..++.+++
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~-----------~~~~vR~Rv~el~v~i~ 188 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQ-----------SSDIVRCRVYELLVEIA 188 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhc-----------cCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988877778888889999999988 67888889999999998
Q ss_pred C-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCC--hHH---
Q 048113 162 T-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGS--PQC--- 235 (339)
Q Consensus 162 ~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~--- 235 (339)
. +++....+.+.|+++.+++.+++. +.-++.+|+.+|. .++..+.+...+.+ .|+++.|++++.+.+ +..
T Consensus 189 ~~S~~~~~~~~~sgll~~ll~eL~~d--DiLvqlnalell~-~La~~~~g~~yL~~-~gi~~~L~~~l~~~~~dp~~~~~ 264 (503)
T PF10508_consen 189 SHSPEAAEAVVNSGLLDLLLKELDSD--DILVQLNALELLS-ELAETPHGLQYLEQ-QGIFDKLSNLLQDSEEDPRLSSL 264 (503)
T ss_pred hcCHHHHHHHHhccHHHHHHHHhcCc--cHHHHHHHHHHHH-HHHcChhHHHHHHh-CCHHHHHHHHHhccccCCcccch
Confidence 7 566677778889999999999983 5778889999999 78889999999987 899999999998642 301
Q ss_pred H-HHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhh-h---hhHHHHHH
Q 048113 236 K-EHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQ-L---KNELVEQI 310 (339)
Q Consensus 236 ~-~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~-~---~~~~~~~i 310 (339)
. -.......+++..++....... -..+..|.+++.+.++..+..|..++..++... .++. + ..+.+...
T Consensus 265 ~l~g~~~f~g~la~~~~~~v~~~~--p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~----~G~~~L~~~~~~~~~~~ 338 (503)
T PF10508_consen 265 LLPGRMKFFGNLARVSPQEVLELY--PAFLERLFSMLESQDPTIREVAFDTLGQIGSTV----EGKQLLLQKQGPAMKHV 338 (503)
T ss_pred hhhhHHHHHHHHHhcChHHHHHHH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH----HHHHHHHhhcchHHHHH
Confidence 1 1112344555554333221111 234555666677889999999999999998765 2332 2 23455566
Q ss_pred HHHHH---hcC-cccchHHHHHHHHHHH
Q 048113 311 MQEID---AEG-DTVAGTTLRLVEEMIA 334 (339)
Q Consensus 311 ~~~~~---~~~-~~~~~~a~~~l~~~v~ 334 (339)
+..+. ..| .+++-.+...++++..
T Consensus 339 l~~~~~~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 339 LKAIGDAIKSGSTELKLRALHALASILT 366 (503)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 66664 223 4667778888887754
No 21
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.56 E-value=2.7e-13 Score=135.29 Aligned_cols=316 Identities=18% Similarity=0.175 Sum_probs=229.8
Q ss_pred HHHHHHc---CCCHHHHHHHHHHHHHHHHH------HHHHHHhcCChHHHHHHhc-------cC--------CHHHHHHH
Q 048113 4 MLMDNLL---NGERETQIQAANELGKLSRR------QKHKLVERGIIAPLISMLC-------SQ--------DYEAIEAA 59 (339)
Q Consensus 4 ~Lv~~L~---s~~~~~~~~a~~~L~~l~~~------~~~~i~~~g~i~~Lv~lL~-------~~--------~~~~~~~A 59 (339)
.|+.+|. .++.+.+..|-.+|.|+... .|+.+--.-++..+..++. .. +..-...|
T Consensus 239 LLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA 318 (2195)
T KOG2122|consen 239 LLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAA 318 (2195)
T ss_pred HHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHH
Confidence 5677775 23557889999999999864 3333332333333322221 11 22233478
Q ss_pred HHHHHHhccCCcchhhHHhhcCChHHHHHhhcCC------------ChhHHHHHHHHHHHHhcCc-cchHHHH-hcchHH
Q 048113 60 LLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQ------------STTLIELTVAAMLILSSCL-ENKLEIA-SSGAIQ 125 (339)
Q Consensus 60 ~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~------------~~~~~~~a~~~L~nLs~~~-~~~~~i~-~~g~i~ 125 (339)
+.+|..+++ ++++|..|.+.|++.++-.++.-. ...++.++..+|-||...+ .+|..+. ..|+++
T Consensus 319 ~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMe 397 (2195)
T KOG2122|consen 319 LCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFME 397 (2195)
T ss_pred HHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHH
Confidence 899999999 799999999999999998877421 1358999999999999866 4577666 568999
Q ss_pred HHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC--CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHh
Q 048113 126 RLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST--CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENI 203 (339)
Q Consensus 126 ~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~ 203 (339)
.+|..|.+ ...++..-.+.+|.||+= +...++.+.+.|-+..|+..--.. ..+..+...+.+|+|+
T Consensus 398 avVAQL~s-----------~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~-~kEsTLKavLSALWNL 465 (2195)
T KOG2122|consen 398 AVVAQLIS-----------APEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRN-KKESTLKAVLSALWNL 465 (2195)
T ss_pred HHHHHHhc-----------ChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHh-cccchHHHHHHHHhhh
Confidence 99999988 677888889999999986 445577788889999999875443 2456688889999965
Q ss_pred hcCCHhhhHHHHhhCCcHHHHHHHhhcC----ChHHHHHHHHHHHHhhccC--chhHHHHHHhcCChHHHHHhhhcCCHH
Q 048113 204 VSSSEDALQEIAATCGAIRALVETIEEG----SPQCKEHAVAILLLICKSC--RDKYRSSILKEGVMPGLLQLSVDGTWR 277 (339)
Q Consensus 204 l~~~~~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~ 277 (339)
-+.+.+|+..|....|++.-||.+|.-. .-.+.+.+-++|.|.+..- .+.+|+.+.+...+..|++.+++.+-.
T Consensus 466 SAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLT 545 (2195)
T KOG2122|consen 466 SAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLT 545 (2195)
T ss_pred hhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceE
Confidence 5667899999998889999999999743 4578899999998875421 134888899999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHH
Q 048113 278 AKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMI 333 (339)
Q Consensus 278 ~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v 333 (339)
+..++++.||||+--+..- |.-..++..+..+-..|-..+..++..+...|.+++
T Consensus 546 iVSNaCGTLWNLSAR~p~D-Qq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLl 600 (2195)
T KOG2122|consen 546 IVSNACGTLWNLSARSPED-QQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLL 600 (2195)
T ss_pred EeecchhhhhhhhcCCHHH-HHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHh
Confidence 9999999999998644321 222334444444444443555555555445555544
No 22
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=6.7e-12 Score=113.68 Aligned_cols=285 Identities=18% Similarity=0.218 Sum_probs=218.9
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113 2 EEMLMDNLLNGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK 79 (339)
Q Consensus 2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~ 79 (339)
..+||+-|.-++.+........|..++.. ++..+.+.|+|..|+++....+++++...++.|.||+. +...|..++.
T Consensus 306 V~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSF-D~glr~KMv~ 384 (791)
T KOG1222|consen 306 VAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSF-DSGLRPKMVN 384 (791)
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccc-cccccHHHhh
Confidence 35688888888888899999999999986 99999999999999999999999999999999999999 7899999999
Q ss_pred cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCC-C---------------Cc--
Q 048113 80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADD-D---------------NS-- 141 (339)
Q Consensus 80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~-~---------------~~-- 141 (339)
.|.+|.|..+|.+.. -..-|+..++.+|.++..|..+.-.++|+.+.+.+-..++.. + |.
T Consensus 385 ~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQl 462 (791)
T KOG1222|consen 385 GGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQL 462 (791)
T ss_pred ccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceE
Confidence 999999999998864 234566788888888888887777778887777554432111 1 00
Q ss_pred ---------------------------------------------------cCCCCHHHHHHHHHHHHhhcCCCCChHHH
Q 048113 142 ---------------------------------------------------YGRISVQAKIDAIATLHNLSTCHQLISPI 170 (339)
Q Consensus 142 ---------------------------------------------------~~~~~~~~~~~a~~~L~nLs~~~~~~~~i 170 (339)
...++..+...++.+|.||...+-.-..+
T Consensus 463 vceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~i 542 (791)
T KOG1222|consen 463 VCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKI 542 (791)
T ss_pred EecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHH
Confidence 23345567778889999998766555555
Q ss_pred Hh-cCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC--ChHHHHHHHHHHHHhh
Q 048113 171 VS-SGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEG--SPQCKEHAVAILLLIC 247 (339)
Q Consensus 171 ~~-~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~ 247 (339)
.+ ...||-+-..|+.+-...+++...+-+++ -++.+..+..-+.. +|.|+.++++|+.. +.+..-+.+.+...+.
T Consensus 543 lq~~~LvPw~k~~L~pga~eddLvL~~vi~~G-T~a~d~~cA~Lla~-a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l 620 (791)
T KOG1222|consen 543 LQSENLVPWMKTQLQPGADEDDLVLQIVIACG-TMARDLDCARLLAP-AKLIDTLIELLQACQEDDEFVVQIIYVFLQFL 620 (791)
T ss_pred HhhccccHHHHHhhcCCccchhhhhHHHHHhh-hhhhhhHHHHHhCc-cccHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 44 48899999888876555666666666667 56666655555554 89999999999863 4555556667777776
Q ss_pred ccCchhHHHHHHhcC-ChHHHHHhhhcCCHHHHHHHHHHHHHHhccC
Q 048113 248 KSCRDKYRSSILKEG-VMPGLLQLSVDGTWRAKNMARDLLLLLRDCS 293 (339)
Q Consensus 248 ~~~~~~~~~~~~~~g-~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 293 (339)
.. +..|..++++. .-..|+.++++.+..+++-+-.+|..++.+.
T Consensus 621 ~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d 665 (791)
T KOG1222|consen 621 KH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHD 665 (791)
T ss_pred HH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 66 33567777654 4455899999999999888777888877654
No 23
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.51 E-value=7.1e-12 Score=112.11 Aligned_cols=311 Identities=11% Similarity=0.105 Sum_probs=227.2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHH----HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113 5 LMDNLLNGERETQIQAANELGKLSRR--QKHKL----VERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV 78 (339)
Q Consensus 5 Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i----~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~ 78 (339)
........+..++..+..++...++. .|..| +..|.++.|.+..+|++.++-.+..++|+|.|+.+.++|..+.
T Consensus 47 ~~~~i~~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~ 126 (604)
T KOG4500|consen 47 QASGIMTASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFF 126 (604)
T ss_pred HhcceeeccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHH
Confidence 33334445666777778888888775 33333 5577888888888899999999999999999999999999999
Q ss_pred hcCChHHHHHhhcCC-------ChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCC----C-------
Q 048113 79 KSGIVPVLLEVLQCQ-------STTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADD----D------- 139 (339)
Q Consensus 79 ~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~----~------- 139 (339)
+.||-..++++|+.- +.+....+.+.|.|...+. +.+..+++.|.++.|...+.-+ |. .
T Consensus 127 ~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~--~qNaa~~e~ll~~f 204 (604)
T KOG4500|consen 127 NLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWID--WQNAALTEKLLAPF 204 (604)
T ss_pred hcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcc--cccHHHHHHHHhcc
Confidence 999988888877542 2356777888999988654 4588899999999998877542 21 0
Q ss_pred Cc--------------------------cCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccC----
Q 048113 140 NS--------------------------YGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKS---- 189 (339)
Q Consensus 140 ~~--------------------------~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~---- 189 (339)
++ -++-.++..+-....|...+.++..+-.+.+.|.+..+.++++.....
T Consensus 205 ~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~ 284 (604)
T KOG4500|consen 205 FNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKT 284 (604)
T ss_pred ccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchH
Confidence 00 122345566667788888888999999999999999999998773211
Q ss_pred --chHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHH
Q 048113 190 --SGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGL 267 (339)
Q Consensus 190 --~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L 267 (339)
-.....++.... .+...++.-+.+-.+..+++.++.-+.+++...+..+.-++.|+++.+ ..+..+.+.|.+..|
T Consensus 285 d~~~l~k~~~el~v-llltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D--~~ci~~v~~~~~nkL 361 (604)
T KOG4500|consen 285 DMLNLFKRIAELDV-LLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRD--DICIQLVQKDFLNKL 361 (604)
T ss_pred HHHHHHHhhhhHhh-hhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHH
Confidence 112233444444 455556666666553338889999999988889999999999999885 467888999999999
Q ss_pred HHhhhc-----CCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccc
Q 048113 268 LQLSVD-----GTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVA 322 (339)
Q Consensus 268 ~~ll~~-----~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 322 (339)
++.+-. ++-..+..++.+|+||.-.-. +.....+.+..+.|+....++..++-
T Consensus 362 ~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~--nka~~~~aGvteaIL~~lk~~~ppv~ 419 (604)
T KOG4500|consen 362 ISCLMQEKDVDGNVERQHACLSALRNLMIPVS--NKAHFAPAGVTEAILLQLKLASPPVT 419 (604)
T ss_pred HHHHHHhcCCCccchhHHHHHHHHHhccccCC--chhhccccchHHHHHHHHHhcCCcch
Confidence 988643 566778889999999976443 12334456666777766666666653
No 24
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.51 E-value=4.6e-13 Score=103.36 Aligned_cols=118 Identities=25% Similarity=0.434 Sum_probs=108.8
Q ss_pred HHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc
Q 048113 34 KLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE 113 (339)
Q Consensus 34 ~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~ 113 (339)
.+.+.|+++.+++++.++++.++..|+++|.+++.+++..+..+.+.|++|.++.++.++++.++..++++|.|++...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 46789999999999999999999999999999999778999999999999999999999999999999999999998764
Q ss_pred -chHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113 114 -NKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST 162 (339)
Q Consensus 114 -~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~ 162 (339)
.+..+.+.|+++.|+++++. .+..++..++++|.+|+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~-----------~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDS-----------SNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhc-----------CCHHHHHHHHHHHHHhhC
Confidence 46667789999999999998 789999999999999863
No 25
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=6.3e-12 Score=113.87 Aligned_cols=238 Identities=18% Similarity=0.242 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcC
Q 048113 54 EAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNG 133 (339)
Q Consensus 54 ~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~ 133 (339)
.+...|...|.|++. +-.....+.....+..||+.|+.++.++.......|..||...++|..+.+.|.+++|++++..
T Consensus 278 qLLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~ 356 (791)
T KOG1222|consen 278 QLLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI 356 (791)
T ss_pred HHHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC
Confidence 455678888999999 6888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHH
Q 048113 134 DLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQE 213 (339)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~ 213 (339)
.+++.+...+..|.|+|.+..++..++..|.+|.|+.++.+. .-...|+.+|. .++.++..+..
T Consensus 357 -----------~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d----~~~~iA~~~lY-h~S~dD~~K~M 420 (791)
T KOG1222|consen 357 -----------QHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSD----TKHGIALNMLY-HLSCDDDAKAM 420 (791)
T ss_pred -----------CCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCc----ccchhhhhhhh-hhccCcHHHHH
Confidence 899999999999999999999999999999999999999874 22445888899 89999999988
Q ss_pred HHhhCCcHHHHHHHhhcC-ChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHh-hhcCCHHHHHHHHHHHHHHhc
Q 048113 214 IAATCGAIRALVETIEEG-SPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQL-SVDGTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 214 i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~~~~~A~~~L~~l~~ 291 (339)
+.. .++|+.+.+.+-++ +.++....+....|+|....+ .+.+.+..++..|++. ++..++-. ...+++++.
T Consensus 421 fay-Tdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN--aQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSq 493 (791)
T KOG1222|consen 421 FAY-TDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN--AQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQ 493 (791)
T ss_pred HHH-HHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc--ceEEecCcchHHHHHHHhcccchHH----HHHHHHhhh
Confidence 886 79999999865543 455555555556788876433 4566777789999887 44443332 346778876
Q ss_pred cCCCcchhhhhhhHHHHHHHHHHHhcC
Q 048113 292 CSSFGSRSKQLKNELVEQIMQEIDAEG 318 (339)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~i~~~~~~~~ 318 (339)
+.. ..+.+.-+-+..+...+..+.
T Consensus 494 Heg---~tqn~FidyvgdLa~i~~nd~ 517 (791)
T KOG1222|consen 494 HEG---ATQNMFIDYVGDLAGIAKNDN 517 (791)
T ss_pred ccc---hHHHHHHHHHHHHHHHhhcCc
Confidence 543 345566667777776666544
No 26
>PRK09687 putative lyase; Provisional
Probab=99.43 E-value=4.8e-11 Score=105.72 Aligned_cols=224 Identities=14% Similarity=0.085 Sum_probs=169.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI 82 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~ 82 (339)
+.|+..|.+.+..+|..|+..|..+- +..+++.+..+++++++.+|..|+++|+.|... +.. ...+
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~--------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~-~~~-----~~~a 91 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRG--------GQDVFRLAIELCSSKNPIERDIGADILSQLGMA-KRC-----QDNV 91 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcC--------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-ccc-----hHHH
Confidence 57889999999999999999997654 466778888899999999999999999999762 221 2245
Q ss_pred hHHHHHh-hcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhc
Q 048113 83 VPVLLEV-LQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS 161 (339)
Q Consensus 83 i~~Lv~l-L~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs 161 (339)
++.|..+ ++++++.++..|+.+|.++....... ...+++.+...+.+ .++.++..++.+|..+.
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D-----------~~~~VR~~a~~aLg~~~ 156 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFD-----------KSTNVRFAVAFALSVIN 156 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhC-----------CCHHHHHHHHHHHhccC
Confidence 6788877 56778999999999999986433211 12256667777777 78899999999997653
Q ss_pred CCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHH
Q 048113 162 TCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVA 241 (339)
Q Consensus 162 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~ 241 (339)
. ..+++.|+.++.+. +..++..|+.+|+ .+... ...+++.|+..|.+.++.++..|+.
T Consensus 157 ~----------~~ai~~L~~~L~d~--~~~VR~~A~~aLg-~~~~~---------~~~~~~~L~~~L~D~~~~VR~~A~~ 214 (280)
T PRK09687 157 D----------EAAIPLLINLLKDP--NGDVRNWAAFALN-SNKYD---------NPDIREAFVAMLQDKNEEIRIEAII 214 (280)
T ss_pred C----------HHHHHHHHHHhcCC--CHHHHHHHHHHHh-cCCCC---------CHHHHHHHHHHhcCCChHHHHHHHH
Confidence 1 23788999999875 4689999999999 44221 1356788999999999999999999
Q ss_pred HHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113 242 ILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 242 ~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 291 (339)
+|..+-. . .++|.|++.+.+++ ++..|+.+|..+..
T Consensus 215 aLg~~~~---~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 215 GLALRKD---K---------RVLSVLIKELKKGT--VGDLIIEAAGELGD 250 (280)
T ss_pred HHHccCC---h---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC
Confidence 9887531 1 26899999988876 45667777666643
No 27
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.41 E-value=8.8e-11 Score=108.40 Aligned_cols=275 Identities=15% Similarity=0.076 Sum_probs=201.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHH-HHH--HHHhcCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113 4 MLMDNLLNGERETQIQAANELGKLSRR-QKH--KLVERGIIAPLISMLCSQ-DYEAIEAALLSLLSLACGSERNKIRIVK 79 (339)
Q Consensus 4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~--~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~~i~~ 79 (339)
+++.+|..+|..+...|+..|..+... ... .....-....+...+++. +...+..|+.+|..|.. .+..|..+.+
T Consensus 105 ~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~ 183 (429)
T cd00256 105 PFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVL 183 (429)
T ss_pred HHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHH
Confidence 466788889999999999999998764 111 000111334566666654 56788889999999999 6999999999
Q ss_pred cCChHHHHHhhcCC--ChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113 80 SGIVPVLLEVLQCQ--STTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL 157 (339)
Q Consensus 80 ~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L 157 (339)
.++++.|+.+|... +.+++-+++.++|-|+..++........+.|+.|+++++.. ...++..-++.+|
T Consensus 184 ~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s----------~KEKvvRv~l~~l 253 (429)
T cd00256 184 ADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKES----------TKEKVIRIVLAIF 253 (429)
T ss_pred ccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhh----------hhHHHHHHHHHHH
Confidence 99999999999764 45788899999999999887766666789999999999884 6788999999999
Q ss_pred HhhcCCC-------CChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHh-------hc---------------CC-
Q 048113 158 HNLSTCH-------QLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENI-------VS---------------SS- 207 (339)
Q Consensus 158 ~nLs~~~-------~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~-------l~---------------~~- 207 (339)
.||...+ .....+++.|..+.+-.+......++++.+. +..|... ++ .+
T Consensus 254 ~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~ed-l~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp 332 (429)
T cd00256 254 RNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDD-LKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSP 332 (429)
T ss_pred HHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCC
Confidence 9997632 2235677777766555555444334554432 1111111 12 11
Q ss_pred --------HhhhHHHHhh-CCcHHHHHHHhh-cCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHH
Q 048113 208 --------EDALQEIAAT-CGAIRALVETIE-EGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWR 277 (339)
Q Consensus 208 --------~~~~~~i~~~-~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~ 277 (339)
.+|..++-+. ...+..|+++|+ +.++.+..-||.=+..++...|. +|..+.+-|+=..+++++.+.++.
T Consensus 333 ~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~-gr~i~~~lg~K~~vM~Lm~h~d~~ 411 (429)
T cd00256 333 VHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPR-GKDVVEQLGGKQRVMRLLNHEDPN 411 (429)
T ss_pred CCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCcc-HHHHHHHcCcHHHHHHHhcCCCHH
Confidence 2333344331 224688999995 45677778888888999988765 788888899999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 048113 278 AKNMARDLLLLLRD 291 (339)
Q Consensus 278 ~~~~A~~~L~~l~~ 291 (339)
++..|..+++-|--
T Consensus 412 Vr~eAL~avQklm~ 425 (429)
T cd00256 412 VRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987643
No 28
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.39 E-value=1.7e-11 Score=94.52 Aligned_cols=117 Identities=21% Similarity=0.275 Sum_probs=104.3
Q ss_pred HHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCC-HhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhh
Q 048113 169 PIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSS-EDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLIC 247 (339)
Q Consensus 169 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 247 (339)
.+++.|+++.++++++++ +..++..++.+|+ +++.. ++.+..+.+ .|+++.+++++.++++.++..++++|.+++
T Consensus 2 ~~~~~~~i~~l~~~l~~~--~~~~~~~a~~~l~-~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 2 AVIQAGGLPALVSLLSSS--DENVQREAAWALS-NLSAGNNDNIQAVVE-AGGLPALVQLLKSEDEEVVKAALWALRNLA 77 (120)
T ss_pred hHHHcCChHHHHHHHHcC--CHHHHHHHHHHHH-HHhcCCHHHHHHHHH-CCChHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 467889999999999975 4789999999999 45554 888888887 799999999999999999999999999999
Q ss_pred ccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHh
Q 048113 248 KSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLR 290 (339)
Q Consensus 248 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~ 290 (339)
...+. .+..+.+.|+++.|++++.+.+..+++.|+++|.+|+
T Consensus 78 ~~~~~-~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 78 AGPED-NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred cCcHH-HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 87643 6777888999999999999999999999999999986
No 29
>PRK09687 putative lyase; Provisional
Probab=99.36 E-value=6e-11 Score=105.10 Aligned_cols=220 Identities=13% Similarity=0.069 Sum_probs=168.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH-hccCCHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISM-LCSQDYEAIEAALLSLLSLACGSERNKIRIVKSG 81 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~l-L~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g 81 (339)
+.+..++.++++.+|..|+++|..+-...+. ....++.|..+ ++++++.++..|+.+|++++.. .... ...
T Consensus 57 ~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~-~~~~----~~~ 128 (280)
T PRK09687 57 RLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNVFNILNNLALEDKSACVRASAINATGHRCKK-NPLY----SPK 128 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccc-cccc----chH
Confidence 3466778899999999999999887532100 12356777776 6778999999999999999763 2111 122
Q ss_pred ChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhc
Q 048113 82 IVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS 161 (339)
Q Consensus 82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs 161 (339)
+++.+...+.++++.++..++.+|.++. ...+++.|+.++.+ .++.++..|+.+|..+.
T Consensus 129 a~~~l~~~~~D~~~~VR~~a~~aLg~~~----------~~~ai~~L~~~L~d-----------~~~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 129 IVEQSQITAFDKSTNVRFAVAFALSVIN----------DEAAIPLLINLLKD-----------PNGDVRNWAAFALNSNK 187 (280)
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHhccC----------CHHHHHHHHHHhcC-----------CCHHHHHHHHHHHhcCC
Confidence 4566777888889999999999996542 33479999999998 78899999999999984
Q ss_pred CCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHH
Q 048113 162 TCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVA 241 (339)
Q Consensus 162 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~ 241 (339)
..++ .+++.|+..+.+. +..++..|..+|+ .+ . +..+++.|++.|++++ ++..++.
T Consensus 188 ~~~~--------~~~~~L~~~L~D~--~~~VR~~A~~aLg-~~----------~-~~~av~~Li~~L~~~~--~~~~a~~ 243 (280)
T PRK09687 188 YDNP--------DIREAFVAMLQDK--NEEIRIEAIIGLA-LR----------K-DKRVLSVLIKELKKGT--VGDLIIE 243 (280)
T ss_pred CCCH--------HHHHHHHHHhcCC--ChHHHHHHHHHHH-cc----------C-ChhHHHHHHHHHcCCc--hHHHHHH
Confidence 3222 4678899999875 5799999999999 32 1 2468999999999866 5567888
Q ss_pred HHHHhhccCchhHHHHHHhcCChHHHHHhhh-cCCHHHHHHHHHHHH
Q 048113 242 ILLLICKSCRDKYRSSILKEGVMPGLLQLSV-DGTWRAKNMARDLLL 287 (339)
Q Consensus 242 ~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~A~~~L~ 287 (339)
+|..+... .++|.|.+++. +.++.++.+|.+.|.
T Consensus 244 ALg~ig~~------------~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 244 AAGELGDK------------TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHhcCCH------------hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 88877532 26999999986 789999999988875
No 30
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.3e-09 Score=96.49 Aligned_cols=180 Identities=22% Similarity=0.202 Sum_probs=151.5
Q ss_pred CCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHH
Q 048113 11 NGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLE 88 (339)
Q Consensus 11 s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~ 88 (339)
+.+++.+..|+.-|..+.++ +..-+...|++.+++.++++++..+|+.|+++++.++.+||..+..+.+.|+.+.|+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 56889999999999999998 8999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCC-hhHHHHHHHHHHHHhc-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CC
Q 048113 89 VLQCQS-TTLIELTVAAMLILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQ 165 (339)
Q Consensus 89 lL~~~~-~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~ 165 (339)
.+.+++ ...+..|+.+++.|.. +.+....+...++...|..++++++ .+...+..++..+..|... ..
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~---------~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNN---------TSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCC---------cchHHHHHHHHHHHHHHHhhhh
Confidence 998764 4577999999999996 5566788888888999999999843 5778888999999999774 44
Q ss_pred ChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHH
Q 048113 166 LISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLE 201 (339)
Q Consensus 166 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~ 201 (339)
....+...|....+..+.... +.+..+.++.++.
T Consensus 245 ~~d~~~~~~f~~~~~~l~~~l--~~~~~e~~l~~~l 278 (342)
T KOG2160|consen 245 DEDIASSLGFQRVLENLISSL--DFEVNEAALTALL 278 (342)
T ss_pred hhhHHHHhhhhHHHHHHhhcc--chhhhHHHHHHHH
Confidence 445444446666666666553 4677888876666
No 31
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.29 E-value=5.3e-10 Score=101.22 Aligned_cols=250 Identities=15% Similarity=0.151 Sum_probs=172.2
Q ss_pred HHHHHHHHHH---HHHHHHhc---CChHHHHHHhcc--CCHHHHHHHHHHHHHhccCCcchhhHHhhc------CChHHH
Q 048113 21 ANELGKLSRR---QKHKLVER---GIIAPLISMLCS--QDYEAIEAALLSLLSLACGSERNKIRIVKS------GIVPVL 86 (339)
Q Consensus 21 ~~~L~~l~~~---~~~~i~~~---g~i~~Lv~lL~~--~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~------g~i~~L 86 (339)
+..++.+... .|..+.+. +....++.+|+. .++++..+.+..+..+...++.....+... ....++
T Consensus 31 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~f 110 (312)
T PF03224_consen 31 LSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPF 110 (312)
T ss_dssp HHHHHHHHHHHH-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHH
Confidence 3444444432 44445442 346666666654 588999999999999999666555555552 267889
Q ss_pred HHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCC
Q 048113 87 LEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQL 166 (339)
Q Consensus 87 v~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~ 166 (339)
++++.+++..++..|+..|..+....+.+..-...+.++.+++++.+.. ++.+...+..++.+|.+|...++.
T Consensus 111 l~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l-------~~~~~~~~~~av~~L~~LL~~~~~ 183 (312)
T PF03224_consen 111 LKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQL-------SSSDSELQYIAVQCLQNLLRSKEY 183 (312)
T ss_dssp HHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT--------HHHH---HHHHHHHHHHHTSHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhh-------cCCCcchHHHHHHHHHHHhCcchh
Confidence 9999999999999999999999876655443333677899998887631 013445668899999999999999
Q ss_pred hHHHHhcCcHHHHHHHh-----hccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC-ChHHHHHHH
Q 048113 167 ISPIVSSGVTYCLLQLI-----HSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEG-SPQCKEHAV 240 (339)
Q Consensus 167 ~~~i~~~g~i~~Lv~ll-----~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~ 240 (339)
|..+.+.|+++.+++++ .++....+++-.++.++. .++-+++....+.. .+.++.|+++++.. .+++.+.++
T Consensus 184 R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lW-lLSF~~~~~~~~~~-~~~i~~L~~i~~~~~KEKvvRv~l 261 (312)
T PF03224_consen 184 RQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLW-LLSFEPEIAEELNK-KYLIPLLADILKDSIKEKVVRVSL 261 (312)
T ss_dssp HHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHH-HHTTSHHHHHHHHT-TSHHHHHHHHHHH--SHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHH-HHhcCHHHHHHHhc-cchHHHHHHHHHhcccchHHHHHH
Confidence 99999999999999999 233335778889999999 99999999999987 67999999999874 588999999
Q ss_pred HHHHHhhccCchhHHHHHHhcCChHHHHHhhhc--CCHHHH
Q 048113 241 AILLLICKSCRDKYRSSILKEGVMPGLLQLSVD--GTWRAK 279 (339)
Q Consensus 241 ~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~~~ 279 (339)
.++.|+....+......|+..|++|.+..+... +++++.
T Consensus 262 a~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ 302 (312)
T PF03224_consen 262 AILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLT 302 (312)
T ss_dssp HHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHH
Confidence 999999988765477888888888877776544 355554
No 32
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.29 E-value=1.3e-09 Score=111.81 Aligned_cols=256 Identities=13% Similarity=0.097 Sum_probs=161.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI 82 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~ 82 (339)
+.|+..|.++++.+|..|+..|..+. ..+.++.|+..|+++++.+|..|+.+|..+....+ .
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----------~ 685 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----------P 685 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----------c
Confidence 56889999999999999999998764 45678889999999999999999999887753111 1
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHHhcCcc-----------c--hH----HHHhcchHHHHHHHhcCCCCCCCCccCCC
Q 048113 83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLE-----------N--KL----EIASSGAIQRLVEILNGDLADDDNSYGRI 145 (339)
Q Consensus 83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~-----------~--~~----~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~ 145 (339)
.+.|...|+++++.++..|+.+|..+...+. . |. .+...+..+.|..++.+ .
T Consensus 686 ~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D-----------~ 754 (897)
T PRK13800 686 APALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATD-----------E 754 (897)
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcC-----------C
Confidence 2466677777777777777777665432110 0 00 00011122333444444 4
Q ss_pred CHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHH
Q 048113 146 SVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALV 225 (339)
Q Consensus 146 ~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv 225 (339)
++.++..++.+|..+.... .+.++.|..++++. +..++..|+.+|+ .+-.. ...++.++
T Consensus 755 ~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~--d~~VR~aA~~aLg-~~g~~----------~~~~~~l~ 813 (897)
T PRK13800 755 NREVRIAVAKGLATLGAGG--------APAGDAVRALTGDP--DPLVRAAALAALA-ELGCP----------PDDVAAAT 813 (897)
T ss_pred CHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCC--CHHHHHHHHHHHH-hcCCc----------chhHHHHH
Confidence 5555555555555443211 12356677777664 4677777777777 32111 12235577
Q ss_pred HHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhH
Q 048113 226 ETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNE 305 (339)
Q Consensus 226 ~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~ 305 (339)
..|+++++.++..|+.+|..+... ..++.|+.++.+.++.++..|+.+|..+... ..
T Consensus 814 ~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~-----------~~ 870 (897)
T PRK13800 814 AALRASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAAVLALTRWPGD-----------PA 870 (897)
T ss_pred HHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHHHHHHhccCCC-----------HH
Confidence 777777788888888888766421 1468999999999999999999999876211 12
Q ss_pred HHHHHHHHHHhcCcccchHHHHHHHH
Q 048113 306 LVEQIMQEIDAEGDTVAGTTLRLVEE 331 (339)
Q Consensus 306 ~~~~i~~~~~~~~~~~~~~a~~~l~~ 331 (339)
....+...+.-+..+++..|.+.|..
T Consensus 871 a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 871 ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 23333334433446677777777653
No 33
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=5e-09 Score=100.25 Aligned_cols=279 Identities=18% Similarity=0.204 Sum_probs=211.6
Q ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccC--CHHHHHHHHHHHHHhccCCc------ch
Q 048113 3 EMLMDNLLN-GERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQ--DYEAIEAALLSLLSLACGSE------RN 73 (339)
Q Consensus 3 ~~Lv~~L~s-~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~------~~ 73 (339)
+.|+++..+ .=.+.|..|++.|+.+++.+|..+...| +++|+..|+.+ |++....++.++.++..+++ +.
T Consensus 25 ~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds 103 (970)
T KOG0946|consen 25 EKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDS 103 (970)
T ss_pred HHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccc
Confidence 456777764 4568899999999999999988876665 67788888765 89999999999999998542 22
Q ss_pred h----------hHHhh-cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc--chHHHH-hcchHHHHHHHhcCCCCCCC
Q 048113 74 K----------IRIVK-SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE--NKLEIA-SSGAIQRLVEILNGDLADDD 139 (339)
Q Consensus 74 ~----------~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~--~~~~i~-~~g~i~~Lv~ll~~~~~~~~ 139 (339)
+ +.+++ .+-|..|+..+...+-.+|..+...+.++..+.+ .+..+. .+-+|.+|+.+|+.
T Consensus 104 ~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D------ 177 (970)
T KOG0946|consen 104 TQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD------ 177 (970)
T ss_pred hhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh------
Confidence 2 23443 4789999999999999999999999999876443 355555 56799999999998
Q ss_pred CccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhc-CcHHHHHHHhhcc--ccCchHHHHHHHHHHHhhcCCHhhhHHHHh
Q 048113 140 NSYGRISVQAKIDAIATLHNLSTCHQLISPIVSS-GVTYCLLQLIHSS--EKSSGLTEKAIALLENIVSSSEDALQEIAA 216 (339)
Q Consensus 140 ~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~-g~i~~Lv~ll~~~--~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~ 216 (339)
....+|..++..|..|..+....+.++.. +++..|+.++... .+..-+.+.|+..|-|++-.+..|...+.+
T Consensus 178 -----srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE 252 (970)
T KOG0946|consen 178 -----SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE 252 (970)
T ss_pred -----hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc
Confidence 78889999999999999988888877776 8999999999763 233567899999999777778888888876
Q ss_pred hCCcHHHHHHHhhc---CCh--------HH--HHHHHHHHHHhhccCc-----hhHHHHHHhcCChHHHHHhhhcC--CH
Q 048113 217 TCGAIRALVETIEE---GSP--------QC--KEHAVAILLLICKSCR-----DKYRSSILKEGVMPGLLQLSVDG--TW 276 (339)
Q Consensus 217 ~~g~i~~Lv~lL~~---~~~--------~~--~~~a~~~L~~l~~~~~-----~~~~~~~~~~g~i~~L~~ll~~~--~~ 276 (339)
.+.||.|.++|.. ++. ++ .-.++.++..+...+. ..+++.+...+++..|+.++.+. ..
T Consensus 253 -~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~ 331 (970)
T KOG0946|consen 253 -GSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPA 331 (970)
T ss_pred -cccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcH
Confidence 8999999988863 121 11 1234455555543221 12445677789999999986655 45
Q ss_pred HHHHHHHHHHHHHhccCC
Q 048113 277 RAKNMARDLLLLLRDCSS 294 (339)
Q Consensus 277 ~~~~~A~~~L~~l~~~~~ 294 (339)
+++..+...+....+++.
T Consensus 332 dIltesiitvAevVRgn~ 349 (970)
T KOG0946|consen 332 DILTESIITVAEVVRGNA 349 (970)
T ss_pred hHHHHHHHHHHHHHHhch
Confidence 567777777777766543
No 34
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.21 E-value=1.1e-09 Score=99.15 Aligned_cols=220 Identities=17% Similarity=0.230 Sum_probs=156.6
Q ss_pred HHHHHHc--CCCHHHHHHHHHHHHHHHHH---HHHHHHh------cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcc
Q 048113 4 MLMDNLL--NGERETQIQAANELGKLSRR---QKHKLVE------RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSER 72 (339)
Q Consensus 4 ~Lv~~L~--s~~~~~~~~a~~~L~~l~~~---~~~~i~~------~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~ 72 (339)
.++.+|. +++++.....+..+.++..+ ....+.+ .....+++++++++|..++..|+..|..|....+.
T Consensus 59 ~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~ 138 (312)
T PF03224_consen 59 LFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPK 138 (312)
T ss_dssp ---HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCc
Confidence 3445554 46888888899999998876 3333333 23789999999999999999999999999985443
Q ss_pred hhhHHhhcCChHHHHHhhcC----CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHh------cCCCCCCCCcc
Q 048113 73 NKIRIVKSGIVPVLLEVLQC----QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEIL------NGDLADDDNSY 142 (339)
Q Consensus 73 ~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll------~~~~~~~~~~~ 142 (339)
.... ...+.++.++..+.+ ++.+.+..++.+|.+|...+..|..+.+.++++.++.++ .+.
T Consensus 139 ~~~~-~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~-------- 209 (312)
T PF03224_consen 139 RSEK-LVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNS-------- 209 (312)
T ss_dssp --HH-HHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH----------------
T ss_pred cccc-hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCC--------
Confidence 3332 225667888887765 345577999999999999999999999999999999999 232
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHh-hhHHHHhhCCcH
Q 048113 143 GRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSED-ALQEIAATCGAI 221 (339)
Q Consensus 143 ~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~-~~~~i~~~~g~i 221 (339)
.+.....+++-++|-||.+++....+.+.+.++.|+++++... .+++.+-+++++.|.+...+. +...++. .|+
T Consensus 210 --~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~-KEKvvRv~la~l~Nl~~~~~~~~~~~mv~-~~~- 284 (312)
T PF03224_consen 210 --SGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSI-KEKVVRVSLAILRNLLSKAPKSNIELMVL-CGL- 284 (312)
T ss_dssp ---HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH---SHHHHHHHHHHHHHTTSSSSTTHHHHHHH-H-H-
T ss_pred --CchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcc-cchHHHHHHHHHHHHHhccHHHHHHHHHH-ccH-
Confidence 5678888999999999999999999999999999999999875 589999999999955544443 6777775 454
Q ss_pred HHHHHHhhc---CChHHHH
Q 048113 222 RALVETIEE---GSPQCKE 237 (339)
Q Consensus 222 ~~Lv~lL~~---~~~~~~~ 237 (339)
..+++.|.. +++++.+
T Consensus 285 l~~l~~L~~rk~~Dedl~e 303 (312)
T PF03224_consen 285 LKTLQNLSERKWSDEDLTE 303 (312)
T ss_dssp HHHHHHHHSS--SSHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHH
Confidence 445555544 3455554
No 35
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2e-09 Score=95.29 Aligned_cols=187 Identities=21% Similarity=0.204 Sum_probs=158.9
Q ss_pred cCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHH
Q 048113 50 SQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLV 128 (339)
Q Consensus 50 ~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv 128 (339)
+.+.+-++.|+.-|..++. +-+|...++..|+..+++..+++++.++|+.|++++...+++. ..+..+.+.|+.++|+
T Consensus 94 s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 3478899999999999999 7999999999999999999999999999999999999999755 5688899999999999
Q ss_pred HHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCC
Q 048113 129 EILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSS 207 (339)
Q Consensus 129 ~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~ 207 (339)
.++.+. .+..++..|+.++++|.. ++.+...+...++...|.+.|+++..+..++..++..+..++...
T Consensus 173 ~~ls~~----------~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~ 242 (342)
T KOG2160|consen 173 KILSSD----------DPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED 242 (342)
T ss_pred HHHccC----------CCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh
Confidence 999874 677888999999999998 567778888898899999999997667889999999999555555
Q ss_pred HhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhc
Q 048113 208 EDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICK 248 (339)
Q Consensus 208 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 248 (339)
...+..+ ...|+...++.+......+..+.++.++..+..
T Consensus 243 ~s~~d~~-~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 243 KSDEDIA-SSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhhhHH-HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 5555544 436777777778877788888888888766654
No 36
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.17 E-value=2e-08 Score=92.94 Aligned_cols=316 Identities=12% Similarity=0.126 Sum_probs=211.1
Q ss_pred HHHHHHc-CCCHHHHHHHHHHHHHHHHH--HH-HHHHh-----cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchh
Q 048113 4 MLMDNLL-NGERETQIQAANELGKLSRR--QK-HKLVE-----RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNK 74 (339)
Q Consensus 4 ~Lv~~L~-s~~~~~~~~a~~~L~~l~~~--~~-~~i~~-----~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~ 74 (339)
.++.+|. .+++++....+..+..+... .+ ..|.+ .+...+++.+|..++.-+...|+..|..+....+.+.
T Consensus 57 ~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~ 136 (429)
T cd00256 57 TFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKM 136 (429)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCcccc
Confidence 3555665 45667777777777777665 22 33444 4678888899998899999999999999987433321
Q ss_pred hHHhhcCChHHHHHhhcCC-ChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHH
Q 048113 75 IRIVKSGIVPVLLEVLQCQ-STTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDA 153 (339)
Q Consensus 75 ~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a 153 (339)
......-...-|...+.++ +...+.-++.+|..|...++.|..+.+.++++.|+.+|+... .+...+..+
T Consensus 137 ~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~---------~~~Ql~Y~~ 207 (429)
T cd00256 137 EGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNAT---------LGFQLQYQS 207 (429)
T ss_pred chhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhcc---------ccHHHHHHH
Confidence 1111111233445555554 466788888999999999999998888889999999998742 367889999
Q ss_pred HHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCC------HhhhHHHHhhCCcHHHHHHH
Q 048113 154 IATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSS------EDALQEIAATCGAIRALVET 227 (339)
Q Consensus 154 ~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~------~~~~~~i~~~~g~i~~Lv~l 227 (339)
+-++|-|+.+++....+.+.|.|+.|+++++... .+++.+-++.+|.|.+... ......+++ .| ++.+++.
T Consensus 208 ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~-KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~-~~-l~~~l~~ 284 (429)
T cd00256 208 IFCIWLLTFNPHAAEVLKRLSLIQDLSDILKEST-KEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQ-CK-VLKTLQS 284 (429)
T ss_pred HHHHHHHhccHHHHHhhccccHHHHHHHHHHhhh-hHHHHHHHHHHHHHHhhcccccchhhhHHHHHHH-cC-hHHHHHH
Confidence 9999999999887777777899999999999864 5899999999999655532 122334554 45 4556666
Q ss_pred hhc---CChHHHHHH-------HHHHHHhhcc--------------Cch--------hHHHHHHhc--CChHHHHHhhh-
Q 048113 228 IEE---GSPQCKEHA-------VAILLLICKS--------------CRD--------KYRSSILKE--GVMPGLLQLSV- 272 (339)
Q Consensus 228 L~~---~~~~~~~~a-------~~~L~~l~~~--------------~~~--------~~~~~~~~~--g~i~~L~~ll~- 272 (339)
|+. +++++.+.. -..+..++.. +|. ++...+.+. ..+..|++++.
T Consensus 285 L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~ 364 (429)
T cd00256 285 LEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLET 364 (429)
T ss_pred HhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 654 234333211 1111222211 111 122334332 36678888885
Q ss_pred cCCHHHHHHHHHHHHHHhccCCCcchhhhh-hhHHHHHHHHHHHhcCcccchHHHHHHHHHH
Q 048113 273 DGTWRAKNMARDLLLLLRDCSSFGSRSKQL-KNELVEQIMQEIDAEGDTVAGTTLRLVEEMI 333 (339)
Q Consensus 273 ~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v 333 (339)
+.++.+..-|+.=+..+.+..+.+ +..+ .-++=+.+|..+.-++++++..|...++.++
T Consensus 365 s~d~~~laVAc~Dige~vr~~P~g--r~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 365 SVDPIILAVACHDIGEYVRHYPRG--KDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred CCCcceeehhhhhHHHHHHHCccH--HHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 446666666777666666655532 1222 3345666777776778999999999998874
No 37
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.16 E-value=1.1e-08 Score=91.91 Aligned_cols=277 Identities=17% Similarity=0.094 Sum_probs=200.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHhcCC-hHHHHHHhcc-CCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR--QKHKLVERGI-IAPLISMLCS-QDYEAIEAALLSLLSLACGSERNKIRIV 78 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~-i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~~i~ 78 (339)
+.++.+|...++.....+.+.++.++.. .+-...+... ...|-..+++ .+++....++++|..+.. -++.|..++
T Consensus 117 ~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v 195 (442)
T KOG2759|consen 117 LSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFV 195 (442)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchhheee
Confidence 4678888899999998899999998875 2111111111 1223334444 577888899999999999 699999999
Q ss_pred hcCChHHHHHhhcC--CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHH
Q 048113 79 KSGIVPVLLEVLQC--QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIAT 156 (339)
Q Consensus 79 ~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~ 156 (339)
.++++..++..+.+ .+-.++-..+.+++.|+.++...+.+...+.|+.|.++++.. ...++..-.+.+
T Consensus 196 ~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~----------~KEKV~Rivlai 265 (442)
T KOG2759|consen 196 IADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKES----------TKEKVTRIVLAI 265 (442)
T ss_pred ecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 99999999999843 267789999999999999888878887889999999999884 578888899999
Q ss_pred HHhhcCCCC---C----hHHHHhcCcHHHHHHHhhccccCchHHHHHH---HHHHH---hhcCCH---------------
Q 048113 157 LHNLSTCHQ---L----ISPIVSSGVTYCLLQLIHSSEKSSGLTEKAI---ALLEN---IVSSSE--------------- 208 (339)
Q Consensus 157 L~nLs~~~~---~----~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~---~~L~n---~l~~~~--------------- 208 (339)
+.|+....+ . +..++.+++.+.+-.+-.....++++...-- ..|.+ -++..+
T Consensus 266 ~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP 345 (442)
T KOG2759|consen 266 FRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSP 345 (442)
T ss_pred HHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCc
Confidence 999977542 2 3455666655555555444433455443211 11111 122111
Q ss_pred ---------hhhHHHHh-hCCcHHHHHHHhhcCC-hHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHH
Q 048113 209 ---------DALQEIAA-TCGAIRALVETIEEGS-PQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWR 277 (339)
Q Consensus 209 ---------~~~~~i~~-~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~ 277 (339)
+|...+-+ ....+..|+.+|+..+ |.+-..|+.=+.......|. ++..+.+.|+=..+++++++.+|+
T Consensus 346 ~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~-gk~vv~k~ggKe~vM~Llnh~d~~ 424 (442)
T KOG2759|consen 346 VHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE-GKAVVEKYGGKERVMNLLNHEDPE 424 (442)
T ss_pred cccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch-HhHHHHHhchHHHHHHHhcCCCch
Confidence 22222221 1234788999998754 77778888888888888765 888888999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 048113 278 AKNMARDLLLLLRD 291 (339)
Q Consensus 278 ~~~~A~~~L~~l~~ 291 (339)
++..|..+++.|-.
T Consensus 425 Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 425 VRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999977644
No 38
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.13 E-value=1.8e-08 Score=103.44 Aligned_cols=226 Identities=19% Similarity=0.111 Sum_probs=151.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCc-----------
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSE----------- 71 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~----------- 71 (339)
+.|+..|.++++.+|..|+.+|..+... ....+.|...|+++++.+|..|+.+|..+..++.
T Consensus 655 ~~L~~aL~D~d~~VR~~Aa~aL~~l~~~-------~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d 727 (897)
T PRK13800 655 PALVAALGDGAAAVRRAAAEGLRELVEV-------LPPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPD 727 (897)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhc-------cCchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCC
Confidence 5688899999999999999999877432 1123455666666777777777776665542110
Q ss_pred -chhhH----HhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCC
Q 048113 72 -RNKIR----IVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRIS 146 (339)
Q Consensus 72 -~~~~~----i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~ 146 (339)
..|.. +.+.+..+.|...+.++++++|..++.+|..+... ....++.|..++++ .+
T Consensus 728 ~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D-----------~d 788 (897)
T PRK13800 728 HRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGD-----------PD 788 (897)
T ss_pred HHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcC-----------CC
Confidence 00000 00011123334444444444444444444443221 11237889999988 78
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHH
Q 048113 147 VQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVE 226 (339)
Q Consensus 147 ~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~ 226 (339)
+.++..|+.+|.++...+. .++.+...|.+. +..++..|+.+|. .+. . ...++.|+.
T Consensus 789 ~~VR~aA~~aLg~~g~~~~---------~~~~l~~aL~d~--d~~VR~~Aa~aL~-~l~----------~-~~a~~~L~~ 845 (897)
T PRK13800 789 PLVRAAALAALAELGCPPD---------DVAAATAALRAS--AWQVRQGAARALA-GAA----------A-DVAVPALVE 845 (897)
T ss_pred HHHHHHHHHHHHhcCCcch---------hHHHHHHHhcCC--ChHHHHHHHHHHH-hcc----------c-cchHHHHHH
Confidence 9999999999998844322 235678888774 5788999999999 432 2 457799999
Q ss_pred HhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 048113 227 TIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLL 288 (339)
Q Consensus 227 lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~ 288 (339)
+|++++..++..|+.+|..+.. + +. ..+.|...+.+.++.++..|..+|..
T Consensus 846 ~L~D~~~~VR~~A~~aL~~~~~-~-~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 846 ALTDPHLDVRKAAVLALTRWPG-D-PA---------ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HhcCCCHHHHHHHHHHHhccCC-C-HH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999999999999999988721 1 21 36788889999999999999998853
No 39
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.08 E-value=4.8e-08 Score=95.05 Aligned_cols=284 Identities=17% Similarity=0.198 Sum_probs=191.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCCh
Q 048113 5 LMDNLLNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIV 83 (339)
Q Consensus 5 Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i 83 (339)
+.+-|.++++..|..|+++++++... .. ...++.+.+++.++++.+|..|+.++..+...+|+. +... .+
T Consensus 84 l~kdl~~~n~~~~~lAL~~l~~i~~~~~~-----~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~ 154 (526)
T PF01602_consen 84 LQKDLNSPNPYIRGLALRTLSNIRTPEMA-----EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LI 154 (526)
T ss_dssp HHHHHCSSSHHHHHHHHHHHHHH-SHHHH-----HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HH
T ss_pred HHHhhcCCCHHHHHHHHhhhhhhcccchh-----hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HH
Confidence 45567899999999999999998854 22 224778889999999999999999999998854442 2222 68
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC
Q 048113 84 PVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC 163 (339)
Q Consensus 84 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~ 163 (339)
+.+.+++.++++.++..|+.++..+...++. ..-.-...++.|.+++.. .++-.+...+..|..++..
T Consensus 155 ~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~-~~~~~~~~~~~L~~~l~~-----------~~~~~q~~il~~l~~~~~~ 222 (526)
T PF01602_consen 155 PKLKQLLSDKDPSVVSAALSLLSEIKCNDDS-YKSLIPKLIRILCQLLSD-----------PDPWLQIKILRLLRRYAPM 222 (526)
T ss_dssp HHHHHHTTHSSHHHHHHHHHHHHHHHCTHHH-HTTHHHHHHHHHHHHHTC-----------CSHHHHHHHHHHHTTSTSS
T ss_pred HHHhhhccCCcchhHHHHHHHHHHHccCcch-hhhhHHHHHHHhhhcccc-----------cchHHHHHHHHHHHhcccC
Confidence 9999999999999999999999998111111 001122344555555555 6888899999999988764
Q ss_pred CCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHH
Q 048113 164 HQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAIL 243 (339)
Q Consensus 164 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 243 (339)
...... ....++.+..++++. +..+...|..++. .+...+. .. ..+++.|++++.++++.++..++..|
T Consensus 223 ~~~~~~--~~~~i~~l~~~l~s~--~~~V~~e~~~~i~-~l~~~~~----~~--~~~~~~L~~lL~s~~~nvr~~~L~~L 291 (526)
T PF01602_consen 223 EPEDAD--KNRIIEPLLNLLQSS--SPSVVYEAIRLII-KLSPSPE----LL--QKAINPLIKLLSSSDPNVRYIALDSL 291 (526)
T ss_dssp SHHHHH--HHHHHHHHHHHHHHH--HHHHHHHHHHHHH-HHSSSHH----HH--HHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred Chhhhh--HHHHHHHHHHHhhcc--ccHHHHHHHHHHH-HhhcchH----HH--HhhHHHHHHHhhcccchhehhHHHHH
Confidence 332221 045677888888864 4678888888888 6666655 33 35788999999988888999999999
Q ss_pred HHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH-hcCcccc
Q 048113 244 LLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID-AEGDTVA 322 (339)
Q Consensus 244 ~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~ 322 (339)
..++...++ . .. ..-..+..+..+.++.++..+..+|..+++..+ - ..++..+...+. ....+.+
T Consensus 292 ~~l~~~~~~----~-v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n----~----~~Il~eL~~~l~~~~d~~~~ 357 (526)
T PF01602_consen 292 SQLAQSNPP----A-VF-NQSLILFFLLYDDDPSIRKKALDLLYKLANESN----V----KEILDELLKYLSELSDPDFR 357 (526)
T ss_dssp HHHCCHCHH----H-HG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH----H----HHHHHHHHHHHHHC--HHHH
T ss_pred HHhhcccch----h-hh-hhhhhhheecCCCChhHHHHHHHHHhhcccccc----h----hhHHHHHHHHHHhccchhhh
Confidence 999876422 2 22 222223333448889999999999999987542 1 234555555552 3233355
Q ss_pred hHHHHHHHHHHH
Q 048113 323 GTTLRLVEEMIA 334 (339)
Q Consensus 323 ~~a~~~l~~~v~ 334 (339)
..+-+.+..+..
T Consensus 358 ~~~i~~I~~la~ 369 (526)
T PF01602_consen 358 RELIKAIGDLAE 369 (526)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHh
Confidence 554444444443
No 40
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=3e-08 Score=95.73 Aligned_cols=251 Identities=18% Similarity=0.210 Sum_probs=193.6
Q ss_pred HHHHHHcC-CCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCcchhhHH
Q 048113 4 MLMDNLLN-GERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCSQ-DYEAIEAALLSLLSLACGSERNKIRI 77 (339)
Q Consensus 4 ~Lv~~L~s-~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~~i 77 (339)
.|+.-|.. +|+..|.+|+.-|+....- .-..|--.-.+|.|+.+|++. +.+++..|+++|.+|+.-.|.....+
T Consensus 171 kLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~v 250 (1051)
T KOG0168|consen 171 KLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIV 250 (1051)
T ss_pred HHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhee
Confidence 34555554 4889999998888886543 333444567899999999886 78999999999999999999999999
Q ss_pred hhcCChHHHHHhhc-CCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHH
Q 048113 78 VKSGIVPVLLEVLQ-CQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIAT 156 (339)
Q Consensus 78 ~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~ 156 (339)
++.++||.|+.-|. =...++-+.++.+|-.++...+ ..|...|++...+.+|+. -+..++..|+.+
T Consensus 251 V~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDF-----------FSi~aQR~Alai 317 (1051)
T KOG0168|consen 251 VDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDF-----------FSIHAQRVALAI 317 (1051)
T ss_pred ecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 99999999998554 4567899999999999998665 567789999999999998 788999999999
Q ss_pred HHhhcC--CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhc---CCHhhhHHHHhhCCcHHHHHHHhhcC
Q 048113 157 LHNLST--CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVS---SSEDALQEIAATCGAIRALVETIEEG 231 (339)
Q Consensus 157 L~nLs~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~---~~~~~~~~i~~~~g~i~~Lv~lL~~~ 231 (339)
..|.|. .++.-..+++ ++|.|..+|+.. +.+..+.++-+++.... ..++--.++.. .|.|....+++.-.
T Consensus 318 aaN~Cksi~sd~f~~v~e--alPlL~~lLs~~--D~k~ies~~ic~~ri~d~f~h~~~kLdql~s-~dLi~~~~qLlsvt 392 (1051)
T KOG0168|consen 318 AANCCKSIRSDEFHFVME--ALPLLTPLLSYQ--DKKPIESVCICLTRIADGFQHGPDKLDQLCS-HDLITNIQQLLSVT 392 (1051)
T ss_pred HHHHHhcCCCccchHHHH--HHHHHHHHHhhc--cchhHHHHHHHHHHHHHhcccChHHHHHHhc-hhHHHHHHHHHhcC
Confidence 999987 3455555655 699999999875 46777777766663332 33444566676 79999999988753
Q ss_pred ----ChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc
Q 048113 232 ----SPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD 273 (339)
Q Consensus 232 ----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~ 273 (339)
+..+....+..|..+|..++. ....+.+.++...|..++..
T Consensus 393 ~t~Ls~~~~~~vIrmls~msS~~pl-~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 393 PTILSNGTYTGVIRMLSLMSSGSPL-LFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred cccccccchhHHHHHHHHHccCChH-HHHHHHHhhHHHHHHHHHhc
Confidence 234455566777777777655 66677788888888887754
No 41
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=6e-08 Score=83.89 Aligned_cols=273 Identities=16% Similarity=0.169 Sum_probs=191.2
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHh-cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113 2 EEMLMDNLLNGERETQIQAANELGKLSRR-QKHKLVE-RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK 79 (339)
Q Consensus 2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~ 79 (339)
+..+|+.|.+.+|.+|..|+..+..++.. .+..... .-.++.+.+++....+ .+.|+.+|.|++. ++..+..+.+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~ll~ 81 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKKLLQ 81 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHHHHH
Confidence 45789999999999999999999888876 4443332 5578888899887766 7889999999999 6888888887
Q ss_pred cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHH---h---cchHHHHHH-HhcCCCCCCCCccCCCC-HHHHH
Q 048113 80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA---S---SGAIQRLVE-ILNGDLADDDNSYGRIS-VQAKI 151 (339)
Q Consensus 80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~---~---~g~i~~Lv~-ll~~~~~~~~~~~~~~~-~~~~~ 151 (339)
. .+..++.++.++...+-...+..|.||+..++....+. . ..++..++. +.+.+ .+ ..-..
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~----------~n~~a~f~ 150 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKS----------YNAYAEFH 150 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcc----------cccccchh
Confidence 7 88888888888866778888899999998776543322 1 134555554 44442 22 23345
Q ss_pred HHHHHHHhhcCCCCChHHHHhcCcHH-HHHHHhhccccCchHH-HHHHHHHHHhhcCCHhhhHHHHhh-CCcHHHH----
Q 048113 152 DAIATLHNLSTCHQLISPIVSSGVTY-CLLQLIHSSEKSSGLT-EKAIALLENIVSSSEDALQEIAAT-CGAIRAL---- 224 (339)
Q Consensus 152 ~a~~~L~nLs~~~~~~~~i~~~g~i~-~Lv~ll~~~~~~~~~~-~~a~~~L~n~l~~~~~~~~~i~~~-~g~i~~L---- 224 (339)
..+-++.|+++...+|..+.+...++ .-..-+.+. +..++ ...+++|. |++-.......+.+. ...+|.+
T Consensus 151 ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~--~s~vRr~Gvagtlk-N~cFd~~~h~~lL~e~~~lLp~iLlPl 227 (353)
T KOG2973|consen 151 YLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSE--DSQVRRGGVAGTLK-NCCFDAKLHEVLLDESINLLPAILLPL 227 (353)
T ss_pred HHHHHHHHHhhhhhhhhHhcchhhhhHhhhhccccc--chhhhccchHHHHH-hhhccchhHHHHhcchHHHHHHHHhhc
Confidence 67788999999999999887765322 222223332 23443 44668888 677666666555531 1122222
Q ss_pred -----------------HHHhh-----cCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhh-hcCCHHHHHH
Q 048113 225 -----------------VETIE-----EGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLS-VDGTWRAKNM 281 (339)
Q Consensus 225 -----------------v~lL~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~ 281 (339)
+++|. .+++.++..-+.+|..||.. ..+|+.+...|+-|.+.++- ...++++++.
T Consensus 228 agpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT--~~GRe~lR~kgvYpilRElhk~e~ded~~~a 305 (353)
T KOG2973|consen 228 AGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT--RAGREVLRSKGVYPILRELHKWEEDEDIREA 305 (353)
T ss_pred CCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh--hHhHHHHHhcCchHHHHHHhcCCCcHHHHHH
Confidence 24443 24578889999999999976 45899999999999888874 4567778777
Q ss_pred HHHHHHHHhccC
Q 048113 282 ARDLLLLLRDCS 293 (339)
Q Consensus 282 A~~~L~~l~~~~ 293 (339)
.-.+.+.+-...
T Consensus 306 ce~vvq~Lv~~e 317 (353)
T KOG2973|consen 306 CEQVVQMLVRLE 317 (353)
T ss_pred HHHHHHHHHhcc
Confidence 777888887643
No 42
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.04 E-value=8e-08 Score=90.68 Aligned_cols=286 Identities=16% Similarity=0.164 Sum_probs=205.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccC--CHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113 5 LMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQ--DYEAIEAALLSLLSLACGSERNKIRIVK 79 (339)
Q Consensus 5 Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~~~~~~i~~ 79 (339)
++..|.+.+|+....|....+|+..+ .+..+.+.|.++.|+.+++.. .+++...-+..+..+..+.......+.+
T Consensus 14 ~l~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~ 93 (678)
T KOG1293|consen 14 LLYRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLR 93 (678)
T ss_pred HHHhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHH
Confidence 44556688999999999999999886 666789999999999987654 6677777778888888888888999999
Q ss_pred cCChHHHHHhhcCCC-hhHHHHHHHHHHHHhcCccchHHHH---------------------------------------
Q 048113 80 SGIVPVLLEVLQCQS-TTLIELTVAAMLILSSCLENKLEIA--------------------------------------- 119 (339)
Q Consensus 80 ~g~i~~Lv~lL~~~~-~~~~~~a~~~L~nLs~~~~~~~~i~--------------------------------------- 119 (339)
++..+.|.++|.+++ ..+++..++.+.++-...+..+...
T Consensus 94 ~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~h 173 (678)
T KOG1293|consen 94 IIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDH 173 (678)
T ss_pred HhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchh
Confidence 999999999999888 5577777777766654332211000
Q ss_pred -----hcchHHHH---------------------------------------------------HHHhcCC---------
Q 048113 120 -----SSGAIQRL---------------------------------------------------VEILNGD--------- 134 (339)
Q Consensus 120 -----~~g~i~~L---------------------------------------------------v~ll~~~--------- 134 (339)
+.|..+++ .++++++
T Consensus 174 q~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl 253 (678)
T KOG1293|consen 174 QLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSL 253 (678)
T ss_pred hheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHH
Confidence 01111111 0111111
Q ss_pred ---------C------CCC-------C------------Cc---------------------------------------
Q 048113 135 ---------L------ADD-------D------------NS--------------------------------------- 141 (339)
Q Consensus 135 ---------~------~~~-------~------------~~--------------------------------------- 141 (339)
+ .|. | ++
T Consensus 254 ~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~el 333 (678)
T KOG1293|consen 254 ECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTEL 333 (678)
T ss_pred HHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHH
Confidence 0 000 0 00
Q ss_pred ----------------------------------------------------cCCCCHHHHHHHHHHHHhhcCC-CCChH
Q 048113 142 ----------------------------------------------------YGRISVQAKIDAIATLHNLSTC-HQLIS 168 (339)
Q Consensus 142 ----------------------------------------------------~~~~~~~~~~~a~~~L~nLs~~-~~~~~ 168 (339)
.--.+.+++.+|+.++.+++.. ...+.
T Consensus 334 lf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~t 413 (678)
T KOG1293|consen 334 LFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRT 413 (678)
T ss_pred HHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0113556667777777777652 33333
Q ss_pred HHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhc
Q 048113 169 PIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICK 248 (339)
Q Consensus 169 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 248 (339)
-+-...+.++|++++.++ +.-+...++++++|.+-....-+..+.. .|+|..+..++.+..+..+..+.|+|.++..
T Consensus 414 g~~~~dv~~plvqll~dp--~~~i~~~~lgai~NlVmefs~~kskfl~-~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f 490 (678)
T KOG1293|consen 414 GLKRNDVAQPLVQLLMDP--EIMIMGITLGAICNLVMEFSNLKSKFLR-NNGIDILESMLTDPDFNSRANSLWVLRHLMF 490 (678)
T ss_pred CCccchhHHHHHHHhhCc--chhHHHHHHHHHHHHHhhcccHHHHHHH-cCcHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 355567899999999774 5678888999999766667777888887 8999999999999999999999999999998
Q ss_pred cCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccC
Q 048113 249 SCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCS 293 (339)
Q Consensus 249 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 293 (339)
.+.++.+......=.-..+..+..++++.+|+.+..+|+||..+.
T Consensus 491 ~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 491 NCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred cchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 876654444444334455677899999999999999999998865
No 43
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.02 E-value=6.9e-08 Score=93.92 Aligned_cols=251 Identities=15% Similarity=0.149 Sum_probs=177.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI 82 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~ 82 (339)
+.+...+.++++.+|.+|+.++..+.......+... .++.+..+|.+.++.++..|+.++..+ ..+++... -.-...
T Consensus 117 ~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~ 193 (526)
T PF01602_consen 117 PDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKL 193 (526)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHH
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHH
Confidence 467788899999999999999999988744444444 789999999999999999999999999 31232211 111233
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113 83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST 162 (339)
Q Consensus 83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~ 162 (339)
++.|.+++...++-.+...+.++..++..++.... ....++.+..++++ .++.+...++.++..+..
T Consensus 194 ~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~--~~~~i~~l~~~l~s-----------~~~~V~~e~~~~i~~l~~ 260 (526)
T PF01602_consen 194 IRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDAD--KNRIIEPLLNLLQS-----------SSPSVVYEAIRLIIKLSP 260 (526)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHH--HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHSS
T ss_pred HHHhhhcccccchHHHHHHHHHHHhcccCChhhhh--HHHHHHHHHHHhhc-----------cccHHHHHHHHHHHHhhc
Confidence 55556666778888999998998887764443220 14578888888888 789999999999998876
Q ss_pred CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhh-cCChHHHHHHHH
Q 048113 163 CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIE-EGSPQCKEHAVA 241 (339)
Q Consensus 163 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~a~~ 241 (339)
.+. .-..+++.|.+++.++ +..++..++..|. .++... ...+. .....+..+. ++++.++..++.
T Consensus 261 ~~~-----~~~~~~~~L~~lL~s~--~~nvr~~~L~~L~-~l~~~~---~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~ 326 (526)
T PF01602_consen 261 SPE-----LLQKAINPLIKLLSSS--DPNVRYIALDSLS-QLAQSN---PPAVF---NQSLILFFLLYDDDPSIRKKALD 326 (526)
T ss_dssp SHH-----HHHHHHHHHHHHHTSS--SHHHHHHHHHHHH-HHCCHC---HHHHG---THHHHHHHHHCSSSHHHHHHHHH
T ss_pred chH-----HHHhhHHHHHHHhhcc--cchhehhHHHHHH-Hhhccc---chhhh---hhhhhhheecCCCChhHHHHHHH
Confidence 555 3345788899999864 5778889999888 555443 12221 2233344555 778899999999
Q ss_pred HHHHhhccCchhHHHHHHhcCChHHHHHhhh-cCCHHHHHHHHHHHHHHhc
Q 048113 242 ILLLICKSCRDKYRSSILKEGVMPGLLQLSV-DGTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 242 ~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~A~~~L~~l~~ 291 (339)
+|..++.. . .... +++.|.+.+. ..++..+..++..+..++.
T Consensus 327 lL~~l~~~--~-n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~ 369 (526)
T PF01602_consen 327 LLYKLANE--S-NVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAE 369 (526)
T ss_dssp HHHHH--H--H-HHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred HHhhcccc--c-chhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHh
Confidence 99999854 2 2232 5777888884 4477788888888777764
No 44
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=6.4e-08 Score=96.63 Aligned_cols=232 Identities=13% Similarity=0.132 Sum_probs=158.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHh--cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhc
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVE--RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKS 80 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~ 80 (339)
+++-.+|.|.+|..|..|+.+|+.++.++.+.+.. ..+++..+..|++++|.+|..|+.+++.++.+-...-+.-...
T Consensus 351 ~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e 430 (1075)
T KOG2171|consen 351 EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHE 430 (1075)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHH
Confidence 56778899999999999999999999984444443 5678888899999999999999999999999866666666677
Q ss_pred CChHHHHHhhcCC-ChhHHHHHHHHHHHHhcCccchHHHH--hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113 81 GIVPVLLEVLQCQ-STTLIELTVAAMLILSSCLENKLEIA--SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL 157 (339)
Q Consensus 81 g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L 157 (339)
-.+|.|+..+++. ++.++.+|+.++.|++...+. ..+. =.+.+++++.+|..+ +.+.+++.++.+|
T Consensus 431 ~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~-~~l~pYLd~lm~~~l~~L~~~----------~~~~v~e~vvtaI 499 (1075)
T KOG2171|consen 431 RLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK-SILEPYLDGLMEKKLLLLLQS----------SKPYVQEQAVTAI 499 (1075)
T ss_pred hccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHhcC----------CchhHHHHHHHHH
Confidence 7888999999886 689999999999999975543 2222 235566555555443 7999999999999
Q ss_pred HhhcCCCCChHHHHhcCcHHHHHHHhhcccc--CchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc-----
Q 048113 158 HNLSTCHQLISPIVSSGVTYCLLQLIHSSEK--SSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE----- 230 (339)
Q Consensus 158 ~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~--~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~----- 230 (339)
...+...+..-.=.-.-.+|.|.++|++..+ ...++-++..++. +-....+|+++.. ....+++++-.
T Consensus 500 asvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcis--li~~AVGke~F~~---~a~eliqll~~~~~~~ 574 (1075)
T KOG2171|consen 500 ASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLS--LIARAVGKEKFLP---LAEELIQLLLELQGSD 574 (1075)
T ss_pred HHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHH--HHHHHhhhhhhhH---hHHHHHHHHHhhcccc
Confidence 9987644332111112468888888887642 1233334333333 2223345555543 23334443322
Q ss_pred --CChHHHHHHHHHHHHhhccC
Q 048113 231 --GSPQCKEHAVAILLLICKSC 250 (339)
Q Consensus 231 --~~~~~~~~a~~~L~~l~~~~ 250 (339)
.+....+.......++|..-
T Consensus 575 ~~~dd~~~sy~~~~warmc~il 596 (1075)
T KOG2171|consen 575 QDDDDPLRSYMIAFWARMCRIL 596 (1075)
T ss_pred hhhccccHHHHHHHHHHHHHHh
Confidence 23344555666666776543
No 45
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.3e-07 Score=91.42 Aligned_cols=223 Identities=17% Similarity=0.153 Sum_probs=164.5
Q ss_pred hHHHHHhhcCC-ChhHHHHHHHHHHHHh-c-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHh
Q 048113 83 VPVLLEVLQCQ-STTLIELTVAAMLILS-S-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHN 159 (339)
Q Consensus 83 i~~Lv~lL~~~-~~~~~~~a~~~L~nLs-~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~n 159 (339)
+..|+.=|+.. ++..+..++.=|+.+. . +++.-..+--...+|.|+.+|+.+ .+.++...|+++|.+
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E----------~n~DIMl~AcRalty 238 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHE----------HNFDIMLLACRALTY 238 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcc----------ccHHHHHHHHHHHHH
Confidence 34455555554 6666766666665543 3 333333344556899999999886 689999999999999
Q ss_pred hcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHH
Q 048113 160 LST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEH 238 (339)
Q Consensus 160 Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 238 (339)
|+. .|.....+++.++||.|+.-|..-+ ..++.++++.+|. .++... . +.+.+ +|++...+.+|+=-+..+|..
T Consensus 239 l~evlP~S~a~vV~~~aIPvl~~kL~~Ie-yiDvAEQ~LqALE-~iSR~H-~-~AiL~-AG~l~a~LsylDFFSi~aQR~ 313 (1051)
T KOG0168|consen 239 LCEVLPRSSAIVVDEHAIPVLLEKLLTIE-YIDVAEQSLQALE-KISRRH-P-KAILQ-AGALSAVLSYLDFFSIHAQRV 313 (1051)
T ss_pred HHhhccchhheeecccchHHHHHhhhhhh-hhHHHHHHHHHHH-HHHhhc-c-HHHHh-cccHHHHHHHHHHHHHHHHHH
Confidence 998 7899999999999999998887643 5889999999999 676532 2 36666 899999999998777889999
Q ss_pred HHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCC-cchhh-hhhhHHHHHHHHHHHh
Q 048113 239 AVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSF-GSRSK-QLKNELVEQIMQEIDA 316 (339)
Q Consensus 239 a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~-~~~~~-~~~~~~~~~i~~~~~~ 316 (339)
|+.+..|+|..-+.+--.-+. .++|.|..++...+.+..+.++.++..+.+.-.. ...-+ ....+.++++.+.+.+
T Consensus 314 AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsv 391 (1051)
T KOG0168|consen 314 ALAIAANCCKSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSV 391 (1051)
T ss_pred HHHHHHHHHhcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhc
Confidence 999999999754432222233 4899999999999999999999988888764321 11112 2346888888888775
Q ss_pred cCcccc
Q 048113 317 EGDTVA 322 (339)
Q Consensus 317 ~~~~~~ 322 (339)
....+.
T Consensus 392 t~t~Ls 397 (1051)
T KOG0168|consen 392 TPTILS 397 (1051)
T ss_pred Cccccc
Confidence 544443
No 46
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=6.7e-07 Score=86.06 Aligned_cols=278 Identities=21% Similarity=0.225 Sum_probs=197.3
Q ss_pred cCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCC--ChhHHHHHHHHHHHHhcCcc-
Q 048113 38 RGIIAPLISMLCSQ-DYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQ--STTLIELTVAAMLILSSCLE- 113 (339)
Q Consensus 38 ~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~- 113 (339)
...|+.|+.-+.+. -.+-|+.|++.|..+++ ..|..+ .+.|+++|+..|..+ ++++...++.+++++...++
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~V-ga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEV-GAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHH-HHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 34577777766554 56789999999999998 355544 556789999999875 78999999999999986553
Q ss_pred ------ch-----------HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC--CCCChHHHHhc-
Q 048113 114 ------NK-----------LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST--CHQLISPIVSS- 173 (339)
Q Consensus 114 ------~~-----------~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~--~~~~~~~i~~~- 173 (339)
.+ ..|-..+.|..++..+.. .+-.+|..++..|.++-. ..+.+..+...
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~-----------~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P 165 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEE-----------FDFHVRLYAIQLLSALLSCRPTELQDALLVSP 165 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHh-----------hchhhhhHHHHHHHHHHhcCCHHHHHHHHHCc
Confidence 12 123357889999999988 799999999999999854 34666666665
Q ss_pred CcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc-C---ChHHHHHHHHHHHHhhcc
Q 048113 174 GVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE-G---SPQCKEHAVAILLLICKS 249 (339)
Q Consensus 174 g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~-~---~~~~~~~a~~~L~~l~~~ 249 (339)
-+|..|+.+|.+. .+.++..++-.|+ .++......++++.-.+++..|..++.. | ..-+.+-|+..|-||-.+
T Consensus 166 ~gIS~lmdlL~Ds--rE~IRNe~iLlL~-eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~ 242 (970)
T KOG0946|consen 166 MGISKLMDLLRDS--REPIRNEAILLLS-ELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN 242 (970)
T ss_pred hhHHHHHHHHhhh--hhhhchhHHHHHH-HHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh
Confidence 7899999999984 6888999999999 6777777777776657999999999985 2 346788899999999887
Q ss_pred CchhHHHHHHhcCChHHHHHhhhc---CC-------H-HH--HHHHHHHHHHHhccCCCc----chhhhhhhHHHHHHHH
Q 048113 250 CRDKYRSSILKEGVMPGLLQLSVD---GT-------W-RA--KNMARDLLLLLRDCSSFG----SRSKQLKNELVEQIMQ 312 (339)
Q Consensus 250 ~~~~~~~~~~~~g~i~~L~~ll~~---~~-------~-~~--~~~A~~~L~~l~~~~~~~----~~~~~~~~~~~~~i~~ 312 (339)
+.. .+..+.+.+-+|.|.+++.. ++ + ++ -..|+.+++.+...++-. +.++.+...++-..+.
T Consensus 243 N~S-NQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc 321 (970)
T KOG0946|consen 243 NIS-NQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLC 321 (970)
T ss_pred Ccc-hhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHH
Confidence 644 77888899999999977643 22 1 12 245556666665533211 0123344444444444
Q ss_pred HHH-hcC--cccchHHHHHHHHHHH
Q 048113 313 EID-AEG--DTVAGTTLRLVEEMIA 334 (339)
Q Consensus 313 ~~~-~~~--~~~~~~a~~~l~~~v~ 334 (339)
.+. ..| .++...+--.++++|+
T Consensus 322 ~il~~~~vp~dIltesiitvAevVR 346 (970)
T KOG0946|consen 322 TILMHPGVPADILTESIITVAEVVR 346 (970)
T ss_pred HHHcCCCCcHhHHHHHHHHHHHHHH
Confidence 443 344 3344445555555554
No 47
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.86 E-value=2.4e-07 Score=84.41 Aligned_cols=265 Identities=13% Similarity=0.106 Sum_probs=182.9
Q ss_pred HHHHHHcCCCHHH--HHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhc-cCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113 4 MLMDNLLNGERET--QIQAANELGKLSRR-QKHKLVERGIIAPLISMLC-SQDYEAIEAALLSLLSLACGSERNKIRIVK 79 (339)
Q Consensus 4 ~Lv~~L~s~~~~~--~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~ 79 (339)
.|+.++.+.+.+. |.++.+.|-.+... |++.+..-| ...++.+.+ ...++.+...+..|.++-+++++.++.+++
T Consensus 184 ~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lva 262 (832)
T KOG3678|consen 184 LLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVA 262 (832)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence 5778888887765 89999999998877 888888755 333444433 347788999999999999999999999999
Q ss_pred cCChHHHHHhhcCCChhHHHHHHHHHHHHhcC--ccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113 80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSC--LENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL 157 (339)
Q Consensus 80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L 157 (339)
.|++..++--....+|.+..+++-+|.|++.. ...+..+++..+-+-|.-+-.+ .+.-.+.+|+.+.
T Consensus 263 a~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~s-----------kDel~R~~AClAV 331 (832)
T KOG3678|consen 263 AGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFS-----------KDELLRLHACLAV 331 (832)
T ss_pred hcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcc-----------hHHHHHHHHHHHH
Confidence 99999999888888999999999999999853 3457778777777777776666 6888899999999
Q ss_pred HhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHH
Q 048113 158 HNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKE 237 (339)
Q Consensus 158 ~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 237 (339)
+-|+.+.+.-..+...|.+...-.++.+.+ .....+.+-. . .-....+-++.|+-+|++.--+.+-
T Consensus 332 ~vlat~KE~E~~VrkS~TlaLVEPlva~~D-P~~FARD~hd------------~-aQG~~~d~LqRLvPlLdS~R~EAq~ 397 (832)
T KOG3678|consen 332 AVLATNKEVEREVRKSGTLALVEPLVASLD-PGRFARDAHD------------Y-AQGRGPDDLQRLVPLLDSNRLEAQC 397 (832)
T ss_pred hhhhhhhhhhHHHhhccchhhhhhhhhccC-cchhhhhhhh------------h-hccCChHHHHHhhhhhhcchhhhhh
Confidence 999988877666666665443333333321 1222221111 0 0011234578888888864333333
Q ss_pred HHHHHHHHhhccCchhHH-HHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCC
Q 048113 238 HAVAILLLICKSCRDKYR-SSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSS 294 (339)
Q Consensus 238 ~a~~~L~~l~~~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 294 (339)
-++.-++.=+.-....++ +.+.+-|+|+.|-++..+.+...-.-|..+|..+-..-+
T Consensus 398 i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEVP 455 (832)
T KOG3678|consen 398 IGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEVP 455 (832)
T ss_pred hHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccccC
Confidence 222222211111001112 345668999999999887766666777888888865443
No 48
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=3.2e-07 Score=86.78 Aligned_cols=302 Identities=14% Similarity=0.110 Sum_probs=198.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHh-------cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhh
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVE-------RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKI 75 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~-------~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~ 75 (339)
+.|..+|.+.+...+.-|..+|..++.+..+.+-. .-.+|.++++.++.++.+|..|..++..+--. ....
T Consensus 131 p~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~--~~qa 208 (885)
T KOG2023|consen 131 PQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII--QTQA 208 (885)
T ss_pred HHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec--CcHH
Confidence 56889999999999999999999999873322221 34789999999999999999999998777662 3333
Q ss_pred HHhhc-CChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHH
Q 048113 76 RIVKS-GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAI 154 (339)
Q Consensus 76 ~i~~~-g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~ 154 (339)
.+... ..++.+..+-...++++|.+.|.++..|......|-.=-=.+.++.+++..+. .+..+...|+
T Consensus 209 l~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd-----------~dE~VALEAC 277 (885)
T KOG2023|consen 209 LYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQD-----------VDENVALEAC 277 (885)
T ss_pred HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccC-----------cchhHHHHHH
Confidence 33333 34566666667778999999999999998755533211124678888888777 6888999999
Q ss_pred HHHHhhcCCCCChHHHHhc--CcHHHHHHHhhccccCc------------------------------------------
Q 048113 155 ATLHNLSTCHQLISPIVSS--GVTYCLLQLIHSSEKSS------------------------------------------ 190 (339)
Q Consensus 155 ~~L~nLs~~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~------------------------------------------ 190 (339)
.....++..+--+..+... ..+|.|+.-|...+.+.
T Consensus 278 EFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDddd 357 (885)
T KOG2023|consen 278 EFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDD 357 (885)
T ss_pred HHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccc
Confidence 9999999888444444332 56666665443211100
Q ss_pred ------------hHH---HHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHH
Q 048113 191 ------------GLT---EKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYR 255 (339)
Q Consensus 191 ------------~~~---~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 255 (339)
.++ .+++.+|+| + .+.++.. -.+|.|-+.|.+..=.++|.++-+|..++....
T Consensus 358 De~DDdD~~~dWNLRkCSAAaLDVLan-v-----f~~elL~--~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM---- 425 (885)
T KOG2023|consen 358 DEDDDDDAFSDWNLRKCSAAALDVLAN-V-----FGDELLP--ILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM---- 425 (885)
T ss_pred cccccccccccccHhhccHHHHHHHHH-h-----hHHHHHH--HHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh----
Confidence 112 223444442 1 2223332 234444445555556678888888888875432
Q ss_pred HHHHhc--CChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcC-cccchHHHHHHHH
Q 048113 256 SSILKE--GVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEG-DTVAGTTLRLVEE 331 (339)
Q Consensus 256 ~~~~~~--g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~a~~~l~~ 331 (339)
+-+... ..+|.|++++.+..+-+|.-.+|.|...++---.. .+.+.-...++.+++.+ .|+ .++-+.|=..++.
T Consensus 426 ~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~-~~~~~f~pvL~~ll~~l-lD~NK~VQEAAcsAfAt 502 (885)
T KOG2023|consen 426 QGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQD-SRDEYFKPVLEGLLRRL-LDSNKKVQEAACSAFAT 502 (885)
T ss_pred hhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcC-ChHhhhHHHHHHHHHHH-hcccHHHHHHHHHHHHH
Confidence 222221 26888999999999999999999998887643211 23345566667766666 454 5555554444443
No 49
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=2.2e-06 Score=85.94 Aligned_cols=283 Identities=16% Similarity=0.170 Sum_probs=171.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhc
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKS 80 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~ 80 (339)
+.|+.-.+|+++..|..|+..|..+... ++..=.-....+.+.+-+.+++..++..|++++..++...+.++.....-
T Consensus 121 ~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~ 200 (1075)
T KOG2171|consen 121 QFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKF 200 (1075)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 4567777899999999999999998875 21110011223334444555555599999999999888554343333222
Q ss_pred -CChHHHHHhhc----CCC-------------------------------------------hhHHHHHHHHHHHHhcCc
Q 048113 81 -GIVPVLLEVLQ----CQS-------------------------------------------TTLIELTVAAMLILSSCL 112 (339)
Q Consensus 81 -g~i~~Lv~lL~----~~~-------------------------------------------~~~~~~a~~~L~nLs~~~ 112 (339)
..+|.++..+. .++ +.+|..|+..|..++..-
T Consensus 201 ~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~A 280 (1075)
T KOG2171|consen 201 RDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYA 280 (1075)
T ss_pred HHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhh
Confidence 34454444332 111 345666666666665442
Q ss_pred cchHHHH---hcchHHHHHHHhcCCCCCCCC--------c------------------------------------cCCC
Q 048113 113 ENKLEIA---SSGAIQRLVEILNGDLADDDN--------S------------------------------------YGRI 145 (339)
Q Consensus 113 ~~~~~i~---~~g~i~~Lv~ll~~~~~~~~~--------~------------------------------------~~~~ 145 (339)
+...+.. -...++.++.++....+|++| + ..|.
T Consensus 281 p~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~ 360 (1075)
T KOG2171|consen 281 PAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQST 360 (1075)
T ss_pred HHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCC
Confidence 2111111 122345555555432222110 0 4667
Q ss_pred CHHHHHHHHHHHHhhcCCCCChH-HHHhc--CcHHHHHHHhhccccCchHHHHHHHHHHHhhcCC--HhhhHHHHhhCCc
Q 048113 146 SVQAKIDAIATLHNLSTCHQLIS-PIVSS--GVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSS--EDALQEIAATCGA 220 (339)
Q Consensus 146 ~~~~~~~a~~~L~nLs~~~~~~~-~i~~~--g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~--~~~~~~i~~~~g~ 220 (339)
+...|..|+.+|.-++. ++. .|... .+++..+..|+++ ++.++..|+.+++ .++.+ |+..+..- .-.
T Consensus 361 ~w~~R~AaL~Als~i~E---Gc~~~m~~~l~~Il~~Vl~~l~Dp--hprVr~AA~naig-Q~stdl~p~iqk~~~--e~l 432 (1075)
T KOG2171|consen 361 EWKERHAALLALSVIAE---GCSDVMIGNLPKILPIVLNGLNDP--HPRVRYAALNAIG-QMSTDLQPEIQKKHH--ERL 432 (1075)
T ss_pred CHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHH-hhhhhhcHHHHHHHH--Hhc
Confidence 77888888877777654 222 22221 3566666777764 6899999999999 77765 33333333 457
Q ss_pred HHHHHHHhhc-CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChH-HHHHhhhcCCHHHHHHHHHHHHHHhccCC
Q 048113 221 IRALVETIEE-GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMP-GLLQLSVDGTWRAKNMARDLLLLLRDCSS 294 (339)
Q Consensus 221 i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~-~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 294 (339)
++.|+..+.+ .+++++..|+.++.|++...+...-.... .+.+. .|..+..++++.+++.++.++...+...+
T Consensus 433 ~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 433 PPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred cHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 7889999987 46899999999999998765432111111 24444 33445678889999999999999987653
No 50
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=1.6e-06 Score=75.20 Aligned_cols=269 Identities=16% Similarity=0.157 Sum_probs=176.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh-cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHh
Q 048113 42 APLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK-SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIAS 120 (339)
Q Consensus 42 ~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 120 (339)
..++.++.+.+|.++..|...+..|+.. ..+..... .-.++.+.+++....+ -+.|+.++.|++..+.-+..+.+
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~ 81 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQ 81 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHH
Confidence 4578999999999999999999999984 22322222 2457888888877765 67788999999998887776665
Q ss_pred cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhc------CcHHHHHHHhhccccCchH-H
Q 048113 121 SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSS------GVTYCLLQLIHSSEKSSGL-T 193 (339)
Q Consensus 121 ~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~------g~i~~Lv~ll~~~~~~~~~-~ 193 (339)
. .+..+++++.+ .....-...+..|.||++.+.....+... .++..++..+.+.+..... .
T Consensus 82 ~-~~k~l~~~~~~-----------p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f 149 (353)
T KOG2973|consen 82 D-LLKVLMDMLTD-----------PQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEF 149 (353)
T ss_pred H-HHHHHHHHhcC-----------cccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccch
Confidence 5 88899999887 44556677888999999988776554332 3455555555443222222 3
Q ss_pred HHHHHHHHHhhcCCHhhhHHHHhhCCc--HHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhc--CChHHHHH
Q 048113 194 EKAIALLENIVSSSEDALQEIAATCGA--IRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKE--GVMPGLLQ 269 (339)
Q Consensus 194 ~~a~~~L~n~l~~~~~~~~~i~~~~g~--i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--g~i~~L~~ 269 (339)
....-+++ +++..+.+|.-+.. ... ++.++.+-+.++.-.+...++.|.|.|++.. ....++.. ..+|.+.-
T Consensus 150 ~ylA~vf~-nls~~~~gR~l~~~-~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~--~h~~lL~e~~~lLp~iLl 225 (353)
T KOG2973|consen 150 HYLAPVFA-NLSQFEAGRKLLLE-PKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAK--LHEVLLDESINLLPAILL 225 (353)
T ss_pred hHHHHHHH-HHhhhhhhhhHhcc-hhhhhHhhhhcccccchhhhccchHHHHHhhhccch--hHHHHhcchHHHHHHHHh
Confidence 34445666 89999999988775 332 2233333333455567788999999998743 44555542 23444321
Q ss_pred ---------------------hh-----hcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH--hcCccc
Q 048113 270 ---------------------LS-----VDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID--AEGDTV 321 (339)
Q Consensus 270 ---------------------ll-----~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~ 321 (339)
.+ +.+++.++..-..+|..|+.... -++.+-+-++-.|+++.- .+.+++
T Consensus 226 Plagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~---GRe~lR~kgvYpilRElhk~e~ded~ 302 (353)
T KOG2973|consen 226 PLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA---GREVLRSKGVYPILRELHKWEEDEDI 302 (353)
T ss_pred hcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH---hHHHHHhcCchHHHHHHhcCCCcHHH
Confidence 11 12467788888888877776554 355677777778888874 334555
Q ss_pred chHHHHHHHHHH
Q 048113 322 AGTTLRLVEEMI 333 (339)
Q Consensus 322 ~~~a~~~l~~~v 333 (339)
+..+.++.+=+|
T Consensus 303 ~~ace~vvq~Lv 314 (353)
T KOG2973|consen 303 REACEQVVQMLV 314 (353)
T ss_pred HHHHHHHHHHHH
Confidence 555554444333
No 51
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.76 E-value=5.1e-06 Score=76.49 Aligned_cols=269 Identities=15% Similarity=0.124 Sum_probs=188.9
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccC--CHHHHHHHHHHHHHhccCCcchhhHHhhcCCh
Q 048113 8 NLLNGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQ--DYEAIEAALLSLLSLACGSERNKIRIVKSGIV 83 (339)
Q Consensus 8 ~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i 83 (339)
++-+++.++|..+.+.++-+..+ .-..+.+.++=--++.-|..+ +...|++|++.++.+..- +.+... .-.|++
T Consensus 33 ~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~-~~~~~~-~~~~vv 110 (371)
T PF14664_consen 33 MLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEI-KKGPKE-IPRGVV 110 (371)
T ss_pred HHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHh-cCCccc-CCHHHH
Confidence 45566699999999999998876 666777767555555555443 567899999999988873 333222 356889
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC
Q 048113 84 PVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC 163 (339)
Q Consensus 84 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~ 163 (339)
..++.+.+++++..+..|..+|+.++..++ +.+..+||+..|++.+.+ +..+.....+.++..+-..
T Consensus 111 ralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d-----------~~~~~~~~l~~~lL~lLd~ 177 (371)
T PF14664_consen 111 RALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALID-----------GSFSISESLLDTLLYLLDS 177 (371)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHh-----------ccHhHHHHHHHHHHHHhCC
Confidence 999999999999999999999999998655 677899999999999987 4555888889999999888
Q ss_pred CCChHHHHhcCcHHHHHHHhhcc-----ccCc--hHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHH
Q 048113 164 HQLISPIVSSGVTYCLLQLIHSS-----EKSS--GLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCK 236 (339)
Q Consensus 164 ~~~~~~i~~~g~i~~Lv~ll~~~-----~~~~--~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 236 (339)
|..|+.+...--++.++.-+.+. .++. +....+..++.-.+..++.--.--.+...++..|++.|..++++++
T Consensus 178 p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir 257 (371)
T PF14664_consen 178 PRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIR 257 (371)
T ss_pred cchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHH
Confidence 98888776654466666555443 1122 2333444444425544443222222223578888888888888888
Q ss_pred HHHHHHHHHhhccC-----------------ch------------------------------h----HHHHHHhcCChH
Q 048113 237 EHAVAILLLICKSC-----------------RD------------------------------K----YRSSILKEGVMP 265 (339)
Q Consensus 237 ~~a~~~L~~l~~~~-----------------~~------------------------------~----~~~~~~~~g~i~ 265 (339)
+.....+..+-.-. +. . .-..+++.|.++
T Consensus 258 ~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~ 337 (371)
T PF14664_consen 258 KAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLE 337 (371)
T ss_pred HHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHH
Confidence 77776665542200 00 0 112456789999
Q ss_pred HHHHhhhcC-CHHHHHHHHHHHHHHhc
Q 048113 266 GLLQLSVDG-TWRAKNMARDLLLLLRD 291 (339)
Q Consensus 266 ~L~~ll~~~-~~~~~~~A~~~L~~l~~ 291 (339)
.|++++.+. ++.+..+|.-+|..+-+
T Consensus 338 ~L~~li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 338 ALVELIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 999998877 78888999888876654
No 52
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.75 E-value=1.6e-06 Score=82.07 Aligned_cols=253 Identities=12% Similarity=0.087 Sum_probs=169.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK 79 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~ 79 (339)
+.+.......|...+..|+.++.+++.. -|.-+-...++.+|++++..++.-++..++.+++||.......|..|..
T Consensus 380 ~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~ 459 (678)
T KOG1293|consen 380 SHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLR 459 (678)
T ss_pred HHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHH
Confidence 3344445567888999999999999886 4555667889999999998888899999999999999988899999999
Q ss_pred cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHH--hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113 80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA--SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL 157 (339)
Q Consensus 80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L 157 (339)
.|+|..+.+++.+.++.++..+.|+|.++..+.+...... ..=....++.+..+ .++.+++.+...|
T Consensus 460 ~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd-----------~d~~Vqeq~fqll 528 (678)
T KOG1293|consen 460 NNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLIND-----------PDWAVQEQCFQLL 528 (678)
T ss_pred cCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhC-----------CCHHHHHHHHHHH
Confidence 9999999999999999999999999999998766543322 33345667777777 7999999999999
Q ss_pred HhhcC-CCCChHHHHhc--CcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCH-hhhHHHHhhCCcHHHHHHHhh----
Q 048113 158 HNLST-CHQLISPIVSS--GVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSE-DALQEIAATCGAIRALVETIE---- 229 (339)
Q Consensus 158 ~nLs~-~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~-~~~~~i~~~~g~i~~Lv~lL~---- 229 (339)
+||.- ..+....+++. ..+..+...++-.. ..++...-..-..+++...+ +.+..+ .|..+.++-.-.
T Consensus 529 RNl~c~~~~svdfll~~~~~~ld~i~l~lk~a~-~~pi~ie~~~~~~~l~~~~d~~~~~am---~~~fk~lvl~~e~~~n 604 (678)
T KOG1293|consen 529 RNLTCNSRKSVDFLLEKFKDVLDKIDLQLKIAI-GSPILIEFLAKKMRLLNPLDTQQKKAM---EGIFKILVLLAEVNEN 604 (678)
T ss_pred HHhhcCcHHHHHHHHHhhhHHHHHHHHHHhhcc-CCceehhhHHHHHHhccchhHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 99954 45666666665 23333333333221 23444333333332232222 222222 244444443222
Q ss_pred ----cCChHHHHHHHHHHHHhhccCc--hhHHHHHHhcCChHHHHHh
Q 048113 230 ----EGSPQCKEHAVAILLLICKSCR--DKYRSSILKEGVMPGLLQL 270 (339)
Q Consensus 230 ----~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~g~i~~L~~l 270 (339)
+.......++.+.+.++..... +..|+.....++.......
T Consensus 605 ~~q~s~~~qls~~~~~~iinl~~~~s~s~~dr~~~~~n~i~e~~~k~ 651 (678)
T KOG1293|consen 605 KKQLSIEQQLSLNIMSEIINLTTTDSSSNFDRSNLKLNCIWELNNKL 651 (678)
T ss_pred HHhhccHHHHHHHHHHHHHhccCCCCCcccchhhccccceechhhhc
Confidence 1234455667777777764322 2233333345555555444
No 53
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.68 E-value=1e-06 Score=79.44 Aligned_cols=236 Identities=13% Similarity=0.143 Sum_probs=164.2
Q ss_pred HHHHHcC-CCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhcc--CCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113 5 LMDNLLN-GERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCS--QDYEAIEAALLSLLSLACGSERNKIRIVK 79 (339)
Q Consensus 5 Lv~~L~s-~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~ 79 (339)
|...+++ .+.+.+..|+++|.-+... +|..+...+++..++..+.+ .+-++|...+.++..|+. +|...+.+..
T Consensus 161 l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~~~ae~~~~ 239 (442)
T KOG2759|consen 161 LKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF-NPHAAEKLKR 239 (442)
T ss_pred HHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc-CHHHHHHHhh
Confidence 3344454 5677788899999998885 99999999999999988743 267899999999999999 7888888878
Q ss_pred cCChHHHHHhhcCCCh-hHHHHHHHHHHHHhcCccc---hH----HHHhcchHHHHHHHhcC-CCCCCCCc---------
Q 048113 80 SGIVPVLLEVLQCQST-TLIELTVAAMLILSSCLEN---KL----EIASSGAIQRLVEILNG-DLADDDNS--------- 141 (339)
Q Consensus 80 ~g~i~~Lv~lL~~~~~-~~~~~a~~~L~nLs~~~~~---~~----~i~~~g~i~~Lv~ll~~-~~~~~~~~--------- 141 (339)
.+.|+.|..+++.... .+....+.++.|+....+. +. .+... .+++-++.|.. .-+|+|..
T Consensus 240 ~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~-~v~k~l~~L~~rkysDEDL~~di~~L~e~ 318 (442)
T KOG2759|consen 240 FDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLC-KVLKTLQSLEERKYSDEDLVDDIEFLTEK 318 (442)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhc-CchHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 8999999999998764 4777888999999865432 22 22233 45566665543 32222210
Q ss_pred -------cCCCCHHHHHHHHHHH-HhhcCCC---------CChHHHHhc--CcHHHHHHHhhccccCchHHHHHHHHHHH
Q 048113 142 -------YGRISVQAKIDAIATL-HNLSTCH---------QLISPIVSS--GVTYCLLQLIHSSEKSSGLTEKAIALLEN 202 (339)
Q Consensus 142 -------~~~~~~~~~~~a~~~L-~nLs~~~---------~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n 202 (339)
.+|-+ +...... ..|.=+| +|...+-+. ..+..|+++|+..+ ++.+.--|+.=++.
T Consensus 319 L~~svq~LsSFD----eY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~-Dp~iL~VAc~DIge 393 (442)
T KOG2759|consen 319 LKNSVQDLSSFD----EYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSN-DPIILCVACHDIGE 393 (442)
T ss_pred HHHHHHhhccHH----HHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCC-CCceeehhhhhHHH
Confidence 00000 0011111 1111111 334445444 47889999998865 34555555544554
Q ss_pred hhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhc
Q 048113 203 IVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICK 248 (339)
Q Consensus 203 ~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 248 (339)
.+-..|+++..+.+ .|+=+.+.+++.+.++.++.+|+.++..+..
T Consensus 394 ~Vr~yP~gk~vv~k-~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 394 YVRHYPEGKAVVEK-YGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHhCchHhHHHHH-hchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 77788999988887 8999999999999999999999999877654
No 54
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.66 E-value=4.2e-07 Score=69.37 Aligned_cols=129 Identities=15% Similarity=0.164 Sum_probs=109.2
Q ss_pred HHHHHHc-CCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhc
Q 048113 4 MLMDNLL-NGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKS 80 (339)
Q Consensus 4 ~Lv~~L~-s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~ 80 (339)
.||+-.. ..+.+.+.....-|.|++-+ +...+.+.+++..++.-|...+..+.+-++..|+|+|- ++.|...|.++
T Consensus 20 ~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~I~ea 98 (173)
T KOG4646|consen 20 HLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKFIREA 98 (173)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHHHHHh
Confidence 3455554 46888899999999999988 89999999999999999999999999999999999999 79999999999
Q ss_pred CChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc-chHHHHhcchHHHHHHHhcC
Q 048113 81 GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE-NKLEIASSGAIQRLVEILNG 133 (339)
Q Consensus 81 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~ll~~ 133 (339)
+++|.++..+.++...+...++.++..|+..+. .++.+.....+..+.++-.+
T Consensus 99 ~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s 152 (173)
T KOG4646|consen 99 LGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRES 152 (173)
T ss_pred cCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHH
Confidence 999999999999999999999999999987554 47777666655555555433
No 55
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.62 E-value=3.2e-07 Score=70.00 Aligned_cols=121 Identities=16% Similarity=0.150 Sum_probs=104.7
Q ss_pred hHHHHH-HhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHH
Q 048113 41 IAPLIS-MLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA 119 (339)
Q Consensus 41 i~~Lv~-lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~ 119 (339)
+..|+. +=...+.+.++....-|.|++. +|.|...+.+.+++..++..|..++..+++.+...|+|++.+..++..|.
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ 96 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIR 96 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHH
Confidence 344443 3334588899999999999999 79999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCChHHHHhc
Q 048113 120 SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQLISPIVSS 173 (339)
Q Consensus 120 ~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~ 173 (339)
+.+++|.++..+.+ ....+...|+.++..|+.. ...+..+...
T Consensus 97 ea~g~plii~~lss-----------p~e~tv~sa~~~l~~l~~~~Rt~r~ell~p 140 (173)
T KOG4646|consen 97 EALGLPLIIFVLSS-----------PPEITVHSAALFLQLLEFGERTERDELLSP 140 (173)
T ss_pred HhcCCceEEeecCC-----------ChHHHHHHHHHHHHHhcCcccchhHHhccH
Confidence 99999999999988 6788888999999999884 4556666543
No 56
>PTZ00429 beta-adaptin; Provisional
Probab=98.60 E-value=5e-05 Score=75.82 Aligned_cols=178 Identities=15% Similarity=0.076 Sum_probs=107.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI 82 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~ 82 (339)
+.+.+.|.+.++.+|..|+-++.++-......+.+.|.++.|.++|.+.++.++.+|+.+|..+...++. +. -...+.
T Consensus 143 ~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~-~l-~l~~~~ 220 (746)
T PTZ00429 143 EPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE-KI-ESSNEW 220 (746)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch-hh-HHHHHH
Confidence 4456666777888888888888777655445555677778888888888888888888888888764332 11 122344
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113 83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST 162 (339)
Q Consensus 83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~ 162 (339)
+..|+..|...++-.+...+.+|.... +..... ....+..+...|++ .++.+...|++++.++..
T Consensus 221 ~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~e--~~~il~~l~~~Lq~-----------~N~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 221 VNRLVYHLPECNEWGQLYILELLAAQR--PSDKES--AETLLTRVLPRMSH-----------QNPAVVMGAIKVVANLAS 285 (746)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcHH--HHHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHhcC
Confidence 566666665555555555555553321 111111 12467777777777 789999999999999875
Q ss_pred CCCChHHHHhc--CcHHHHHHHhhccccCchHHHHHHHHHH
Q 048113 163 CHQLISPIVSS--GVTYCLLQLIHSSEKSSGLTEKAIALLE 201 (339)
Q Consensus 163 ~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~~a~~~L~ 201 (339)
..+ ...+-.. ...++++.++.+ +.+++-.++..+.
T Consensus 286 ~~~-~~~~~~~~~rl~~pLv~L~ss---~~eiqyvaLr~I~ 322 (746)
T PTZ00429 286 RCS-QELIERCTVRVNTALLTLSRR---DAETQYIVCKNIH 322 (746)
T ss_pred cCC-HHHHHHHHHHHHHHHHHhhCC---CccHHHHHHHHHH
Confidence 421 1111111 123455666433 3456666665544
No 57
>PF05536 Neurochondrin: Neurochondrin
Probab=98.49 E-value=2.6e-05 Score=75.48 Aligned_cols=237 Identities=19% Similarity=0.144 Sum_probs=161.4
Q ss_pred ChHHHHHHhccCCHHHHHHHHHHHHHhccCCcch---hhHHhhcCChHHHHHhhcCC-------ChhHHHHHHHHHHHHh
Q 048113 40 IIAPLISMLCSQDYEAIEAALLSLLSLACGSERN---KIRIVKSGIVPVLLEVLQCQ-------STTLIELTVAAMLILS 109 (339)
Q Consensus 40 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~---~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~nLs 109 (339)
.+...+.+|++.+.+-+-.++-.+.++..+++.. +..+.++=+.+.|-++|.++ ....+..|+.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 4667788999988788889999999999965533 45688887788899999873 3557888999999999
Q ss_pred cCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccC
Q 048113 110 SCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKS 189 (339)
Q Consensus 110 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 189 (339)
.+++....-.=.+-||.|+..+.+. .+..+...++.+|..++..+++++.+++.|+++.|++.+.+.
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~----------s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~--- 152 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSS----------SDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQ--- 152 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcC----------CchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhC---
Confidence 8665432222246799999999883 335899999999999999999999999999999999999873
Q ss_pred chHHHHHHHHHHHhhcCCHh-h---hHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchh----HHHHHHhc
Q 048113 190 SGLTEKAIALLENIVSSSED-A---LQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDK----YRSSILKE 261 (339)
Q Consensus 190 ~~~~~~a~~~L~n~l~~~~~-~---~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~----~~~~~~~~ 261 (339)
+...+.|+.++.+.++.... . ..... ...++.+-..+.......+-..+..|..+-...+.. ....-+-.
T Consensus 153 ~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l--~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~ 230 (543)
T PF05536_consen 153 SFQMEIALNLLLNLLSRLGQKSWAEDSQLL--HSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLS 230 (543)
T ss_pred cchHHHHHHHHHHHHHhcchhhhhhhHHHH--HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHH
Confidence 56688888888854443321 1 11111 134455555555555566677777777775543210 01111122
Q ss_pred CChHHHHHhhhcC-CHHHHHHHHHHHHHHhc
Q 048113 262 GVMPGLLQLSVDG-TWRAKNMARDLLLLLRD 291 (339)
Q Consensus 262 g~i~~L~~ll~~~-~~~~~~~A~~~L~~l~~ 291 (339)
.+...+..++++. ++.-|..|..+...+.+
T Consensus 231 ~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 231 DLRKGLRDILQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3444455555553 55556666665555543
No 58
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.49 E-value=1.6e-05 Score=75.26 Aligned_cols=269 Identities=16% Similarity=0.176 Sum_probs=176.4
Q ss_pred HHHHHHHHHH--HHHHHHhcCChHHHHHHh----------ccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHH
Q 048113 21 ANELGKLSRR--QKHKLVERGIIAPLISML----------CSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLE 88 (339)
Q Consensus 21 ~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL----------~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~ 88 (339)
+.+|+-++++ +...+....++..|.++- ...++++...|+++|+|+-..++..|+.+.+.|+.+.++.
T Consensus 2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~ 81 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE 81 (446)
T ss_pred HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence 5667777776 666666666677777654 2347899999999999999999999999999999999999
Q ss_pred hhcCC-----ChhHHHHHHHHHHHHhcCc-cchHHHH-hcchHHHHHHHhcCCCC--CCCCc----cCCCCHHHHHHHHH
Q 048113 89 VLQCQ-----STTLIELTVAAMLILSSCL-ENKLEIA-SSGAIQRLVEILNGDLA--DDDNS----YGRISVQAKIDAIA 155 (339)
Q Consensus 89 lL~~~-----~~~~~~~a~~~L~nLs~~~-~~~~~i~-~~g~i~~Lv~ll~~~~~--~~~~~----~~~~~~~~~~~a~~ 155 (339)
.|+.. +.++.-...+.|+-++... ..+..++ +.+++..++..+..... +.... -+..+......+++
T Consensus 82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLK 161 (446)
T PF10165_consen 82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILK 161 (446)
T ss_pred HHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHH
Confidence 99876 6788888999998888543 4455555 55788888776654311 11100 12246677788999
Q ss_pred HHHhhcCCCCChHHHHhcCcHHHHHHHhhcc-------ccCchHHHHHHHHHHHhhcCCHhhhHHH-------------H
Q 048113 156 TLHNLSTCHQLISPIVSSGVTYCLLQLIHSS-------EKSSGLTEKAIALLENIVSSSEDALQEI-------------A 215 (339)
Q Consensus 156 ~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~-------~~~~~~~~~a~~~L~n~l~~~~~~~~~i-------------~ 215 (339)
++.|+.........--..+.++.|+.++... .+......+++.+|. ++... ....+ .
T Consensus 162 llFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~-nlpl~--~~~~l~~~~~~~~~~~~~~ 238 (446)
T PF10165_consen 162 LLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALL-NLPLE--CLDSLLSPKFQQSSLFPEG 238 (446)
T ss_pred HHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHh-CCChH--HHhhhhcccCCcccccCCC
Confidence 9999976433222211224556666555432 123455667777777 44221 11110 0
Q ss_pred hhCCcHHHHHHHhhcC----C--h--HHHHHHHHHHHHhhccCchhHHHHHHh----------------cCChHHHHHhh
Q 048113 216 ATCGAIRALVETIEEG----S--P--QCKEHAVAILLLICKSCRDKYRSSILK----------------EGVMPGLLQLS 271 (339)
Q Consensus 216 ~~~g~i~~Lv~lL~~~----~--~--~~~~~a~~~L~~l~~~~~~~~~~~~~~----------------~g~i~~L~~ll 271 (339)
....++..|+++|+.. . . ..-.-.+.+|.+++..+. ..|+.+.. ...-..|++++
T Consensus 239 ~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~-~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLm 317 (446)
T PF10165_consen 239 DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR-EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLM 317 (446)
T ss_pred CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH-HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHh
Confidence 1134678888888641 1 1 233445667777776643 25554443 23555688998
Q ss_pred hcCCHHHHHHHHHHHHHHhccC
Q 048113 272 VDGTWRAKNMARDLLLLLRDCS 293 (339)
Q Consensus 272 ~~~~~~~~~~A~~~L~~l~~~~ 293 (339)
.+..+.++..+...|..|++.+
T Consensus 318 t~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 318 TSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CCCCchHHHHHHHHHHHHHhhh
Confidence 8888999999999999987643
No 59
>PTZ00429 beta-adaptin; Provisional
Probab=98.44 E-value=0.00026 Score=70.77 Aligned_cols=250 Identities=14% Similarity=0.057 Sum_probs=171.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113 4 MLMDNLLNGERETQIQAANELGK-LSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI 82 (339)
Q Consensus 4 ~Lv~~L~s~~~~~~~~a~~~L~~-l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~ 82 (339)
.|-..|.+.+...+..|++-+-. .+.+. --....+.+++++.+++.+++.-..-.+.+.+..+++... -+
T Consensus 36 ELr~~L~s~~~~~kk~alKkvIa~mt~G~----DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal-----La 106 (746)
T PTZ00429 36 ELQNDLNGTDSYRKKAAVKRIIANMTMGR----DVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL-----LA 106 (746)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHCCC----CchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH-----HH
Confidence 35567777777777776664433 33220 0033556677888899999999998888888885444321 24
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113 83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST 162 (339)
Q Consensus 83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~ 162 (339)
+..+.+=+.++++.+|..|+++|+++-..+-. .-.++.+.+.+.+ .++-+|+.|+.++..+-.
T Consensus 107 INtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~------e~l~~~lkk~L~D-----------~~pYVRKtAalai~Kly~ 169 (746)
T PTZ00429 107 VNTFLQDTTNSSPVVRALAVRTMMCIRVSSVL------EYTLEPLRRAVAD-----------PDPYVRKTAAMGLGKLFH 169 (746)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHH------HHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHHh
Confidence 56677888888999999999999876542211 1246667777777 799999999999999865
Q ss_pred CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHH
Q 048113 163 CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAI 242 (339)
Q Consensus 163 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~ 242 (339)
... ..+.+.|.++.|.++|.+. +..+..+|+.+|. .+.......-.+. .+.+..|+..+..-++..|-..+.+
T Consensus 170 ~~p--elv~~~~~~~~L~~LL~D~--dp~Vv~nAl~aL~-eI~~~~~~~l~l~--~~~~~~Ll~~L~e~~EW~Qi~IL~l 242 (746)
T PTZ00429 170 DDM--QLFYQQDFKKDLVELLNDN--NPVVASNAAAIVC-EVNDYGSEKIESS--NEWVNRLVYHLPECNEWGQLYILEL 242 (746)
T ss_pred hCc--ccccccchHHHHHHHhcCC--CccHHHHHHHHHH-HHHHhCchhhHHH--HHHHHHHHHHhhcCChHHHHHHHHH
Confidence 322 2344568889999998864 5788999999999 4543322222222 3567778888877788888877777
Q ss_pred HHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhcc
Q 048113 243 LLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDC 292 (339)
Q Consensus 243 L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 292 (339)
|.... +... .. ....+..+...+++.++.+...|+.++..+...
T Consensus 243 L~~y~---P~~~-~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 243 LAAQR---PSDK-ES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred HHhcC---CCCc-HH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 65432 2211 11 124677778888889999999999988888654
No 60
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=0.00032 Score=61.82 Aligned_cols=271 Identities=17% Similarity=0.169 Sum_probs=189.2
Q ss_pred HcCCCHHHHHHHHHHHHHHHHH-------HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113 9 LLNGERETQIQAANELGKLSRR-------QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSG 81 (339)
Q Consensus 9 L~s~~~~~~~~a~~~L~~l~~~-------~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g 81 (339)
|..++..++.-|+..+..+..+ .-..++..|+.+.++......+.++...|...+..++. .+..-+.+.+..
T Consensus 91 LiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSe 169 (524)
T KOG4413|consen 91 LIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESE 169 (524)
T ss_pred ccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccc
Confidence 4466778888899988888765 22344578999999999999999999999999999999 788888888877
Q ss_pred ChHHH--HHhhcCCChhHHHHHHHHHHHHhc-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113 82 IVPVL--LEVLQCQSTTLIELTVAAMLILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH 158 (339)
Q Consensus 82 ~i~~L--v~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~ 158 (339)
....+ ..+--..+.-.+-.....+..+.+ .+......-++|.+..|..=++.. .+.-++.+.+....
T Consensus 170 llDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGt----------eDtLVianciElvt 239 (524)
T KOG4413|consen 170 LLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT----------EDTLVIANCIELVT 239 (524)
T ss_pred cCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC----------cceeehhhHHHHHH
Confidence 65443 223334455567777777777765 334455566788888888777664 68889999999999
Q ss_pred hhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCC---HhhhHHHHhh-CCcHHHHHHHhhcCChH
Q 048113 159 NLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSS---EDALQEIAAT-CGAIRALVETIEEGSPQ 234 (339)
Q Consensus 159 nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~---~~~~~~i~~~-~g~i~~Lv~lL~~~~~~ 234 (339)
.|...+.+++.+.+.|.|+.+..++...+.++--...++......+... +..-+++++. --++..-.+++...++.
T Consensus 240 eLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpd 319 (524)
T KOG4413|consen 240 ELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPD 319 (524)
T ss_pred HHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCch
Confidence 9999999999999999999999999765433322334554444222211 1111222220 11344445666778899
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHHhcC--ChHHHHHhhhcCCHHH-HHHHHHHHHHHhcc
Q 048113 235 CKEHAVAILLLICKSCRDKYRSSILKEG--VMPGLLQLSVDGTWRA-KNMARDLLLLLRDC 292 (339)
Q Consensus 235 ~~~~a~~~L~~l~~~~~~~~~~~~~~~g--~i~~L~~ll~~~~~~~-~~~A~~~L~~l~~~ 292 (339)
.++.|+.++..+.+. .++.+.+...| ....++.-..+.+... ++.+..+|.+++..
T Consensus 320 aieaAiDalGilGSn--teGadlllkTgppaaehllarafdqnahakqeaaihaLaaIage 378 (524)
T KOG4413|consen 320 AIEAAIDALGILGSN--TEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGE 378 (524)
T ss_pred HHHHHHHHHHhccCC--cchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhcc
Confidence 999999999999866 34666666654 3444554445555555 57778899888764
No 61
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.37 E-value=5.9e-07 Score=55.06 Aligned_cols=41 Identities=29% Similarity=0.363 Sum_probs=38.4
Q ss_pred CcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 048113 70 SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSS 110 (339)
Q Consensus 70 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~ 110 (339)
+++++..+++.|++|.|+.+|.++++++++.|+++|.||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 47889999999999999999999999999999999999973
No 62
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=0.00021 Score=71.47 Aligned_cols=264 Identities=16% Similarity=0.147 Sum_probs=182.0
Q ss_pred HHHHHHc-CCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhc
Q 048113 4 MLMDNLL-NGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKS 80 (339)
Q Consensus 4 ~Lv~~L~-s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~ 80 (339)
.++..|. .+++.++.-|+..+..++.+ +-..+.+.|++..|+.+|.+ -|..|+.++.+|..|+. +++--..-.++
T Consensus 1775 l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S-~~~i~keA~~h 1852 (2235)
T KOG1789|consen 1775 LLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSS-NGQIGKEALEH 1852 (2235)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhc-CcHHHHHHHhc
Confidence 3455565 57888999999999988886 77888899999999999876 56789999999999999 67777777788
Q ss_pred CChHHHHHhhc-CCChhHHHHHHHHHHHHhcCccc--hHHH----------Hh--cchHHHHHHHhcCCC-----CCCC-
Q 048113 81 GIVPVLLEVLQ-CQSTTLIELTVAAMLILSSCLEN--KLEI----------AS--SGAIQRLVEILNGDL-----ADDD- 139 (339)
Q Consensus 81 g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~--~~~i----------~~--~g~i~~Lv~ll~~~~-----~~~~- 139 (339)
|++..+..++- +.++..+..++..+..+..+.-. |..| .+ .++-+..+.++...+ .|.+
T Consensus 1853 g~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~ 1932 (2235)
T KOG1789|consen 1853 GGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEV 1932 (2235)
T ss_pred CchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHh
Confidence 88777777654 45688889999999888754421 2110 00 111244444444321 0000
Q ss_pred ---------------------------C--------------------------------c------------------c
Q 048113 140 ---------------------------N--------------------------------S------------------Y 142 (339)
Q Consensus 140 ---------------------------~--------------------------------~------------------~ 142 (339)
| + +
T Consensus 1933 ~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm 2012 (2235)
T KOG1789|consen 1933 TRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELM 2012 (2235)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHh
Confidence 0 0 0
Q ss_pred CCC--CHHHHHHHHHHHHhh-cCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCC
Q 048113 143 GRI--SVQAKIDAIATLHNL-STCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCG 219 (339)
Q Consensus 143 ~~~--~~~~~~~a~~~L~nL-s~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g 219 (339)
... .......-..++..| ...+...+.+-..|.+|.++..+... ...+-..|+.+|. .++.+.-+...+.. ..
T Consensus 2013 ~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~--n~s~P~SaiRVlH-~Lsen~~C~~AMA~-l~ 2088 (2235)
T KOG1789|consen 2013 SRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQ--NTSAPRSAIRVLH-ELSENQFCCDAMAQ-LP 2088 (2235)
T ss_pred cCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhc--CCcCcHHHHHHHH-HHhhccHHHHHHhc-cc
Confidence 101 111111122223333 44677788888889999999998653 2445578999999 89988888888887 67
Q ss_pred cHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcC
Q 048113 220 AIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDG 274 (339)
Q Consensus 220 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~ 274 (339)
++..++..++.. +.....|+.+|..+......+.-.+..+.|.+|.|++++...
T Consensus 2089 ~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2089 CIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred cchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 778888888764 334457888888887665555667778899999999998754
No 63
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.32 E-value=0.00012 Score=68.25 Aligned_cols=220 Identities=15% Similarity=0.053 Sum_probs=128.8
Q ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113 3 EMLMDNLL-NGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSG 81 (339)
Q Consensus 3 ~~Lv~~L~-s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g 81 (339)
+.++..|. ..+++++..++..+.... ...++..|+..|.+.++.++..++.+|+.+-. .+
T Consensus 57 ~~L~~aL~~d~~~ev~~~aa~al~~~~--------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~-----------~~ 117 (410)
T TIGR02270 57 ELLVSALAEADEPGRVACAALALLAQE--------DALDLRSVLAVLQAGPEGLCAGIQAALGWLGG-----------RQ 117 (410)
T ss_pred HHHHHHHhhCCChhHHHHHHHHHhccC--------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc-----------hH
Confidence 45677774 566677666665552111 11137778888887777788888777764333 34
Q ss_pred ChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhc
Q 048113 82 IVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS 161 (339)
Q Consensus 82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs 161 (339)
..+.|+.+|.++++.++..++.++.. ......+.+..+|++ .++.++..|+.+|..+.
T Consensus 118 a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d-----------~d~~Vra~A~raLG~l~ 175 (410)
T TIGR02270 118 AEPWLEPLLAASEPPGRAIGLAALGA-----------HRHDPGPALEAALTH-----------EDALVRAAALRALGELP 175 (410)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHh-----------hccChHHHHHHHhcC-----------CCHHHHHHHHHHHHhhc
Confidence 55667777777777777666655544 111234566677766 67777777777777653
Q ss_pred CCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHh---------------------hCCc
Q 048113 162 TCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAA---------------------TCGA 220 (339)
Q Consensus 162 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~---------------------~~g~ 220 (339)
.. ..++.|...+.+. ++.++..|+..+. .+ ..+.....+.. ....
T Consensus 176 ~~----------~a~~~L~~al~d~--~~~VR~aA~~al~-~l-G~~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a 241 (410)
T TIGR02270 176 RR----------LSESTLRLYLRDS--DPEVRFAALEAGL-LA-GSRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDA 241 (410)
T ss_pred cc----------cchHHHHHHHcCC--CHHHHHHHHHHHH-Hc-CCHhHHHHHHHHHhccCccHHHHHHHHHHhCCchhH
Confidence 21 2344555555553 4666666666665 33 22221111110 0123
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccC
Q 048113 221 IRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCS 293 (339)
Q Consensus 221 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 293 (339)
++.|..+++++. ++..++.++..+-. -..++.|++.+.+.. ++..|...+..++.-.
T Consensus 242 ~~~L~~ll~d~~--vr~~a~~AlG~lg~------------p~av~~L~~~l~d~~--~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 242 QAWLRELLQAAA--TRREALRAVGLVGD------------VEAAPWCLEAMREPP--WARLAGEAFSLITGMD 298 (410)
T ss_pred HHHHHHHhcChh--hHHHHHHHHHHcCC------------cchHHHHHHHhcCcH--HHHHHHHHHHHhhCCC
Confidence 444555555422 55666666555432 136888888887543 8889999999987643
No 64
>PF05536 Neurochondrin: Neurochondrin
Probab=98.31 E-value=0.00021 Score=69.32 Aligned_cols=247 Identities=16% Similarity=0.104 Sum_probs=161.2
Q ss_pred ChHHHHHhhcCCChhHHHHHHHHHHHHhcCccc----hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113 82 IVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN----KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL 157 (339)
Q Consensus 82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~----~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L 157 (339)
.+...+.+|+..+++-+-.++..+.++...++. +..|.+.=+.+-|-++|+.+... -+.+....+..|+.+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~----~~~~~~~~~~LavsvL 81 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVP----SDCPPEEYLSLAVSVL 81 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCC----CCCCHHHHHHHHHHHH
Confidence 356677888888877788888888888865542 34566665677788888774210 0113466788899999
Q ss_pred HhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHH
Q 048113 158 HNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKE 237 (339)
Q Consensus 158 ~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 237 (339)
..+|..++....=-=.+-||.|++.+.+.+ +..+...|+.+|. .++.++++++.+.+ .|+++.|++.+.+ .+...+
T Consensus 82 ~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s-~~~~v~dalqcL~-~Ias~~~G~~aLl~-~g~v~~L~ei~~~-~~~~~E 157 (543)
T PF05536_consen 82 AAFCRDPELASSPQMVSRIPLLLEILSSSS-DLETVDDALQCLL-AIASSPEGAKALLE-SGAVPALCEIIPN-QSFQME 157 (543)
T ss_pred HHHcCChhhhcCHHHHHHHHHHHHHHHcCC-chhHHHHHHHHHH-HHHcCcHhHHHHHh-cCCHHHHHHHHHh-CcchHH
Confidence 999997776532222257999999998864 2488999999999 78899999999998 8999999999987 667789
Q ss_pred HHHHHHHHhhccCchhHHHH-HHh-cCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCc---c-hhhhhhhHHHHHHH
Q 048113 238 HAVAILLLICKSCRDKYRSS-ILK-EGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFG---S-RSKQLKNELVEQIM 311 (339)
Q Consensus 238 ~a~~~L~~l~~~~~~~~~~~-~~~-~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~---~-~~~~~~~~~~~~i~ 311 (339)
.|..++.+++...+.+.... -.. ...++.+.+.........+...+..|..+-...+.. . ....-.......+.
T Consensus 158 ~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~ 237 (543)
T PF05536_consen 158 IALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLR 237 (543)
T ss_pred HHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHH
Confidence 99999999887643211110 000 134555655555555555677778776665444211 0 11112223333322
Q ss_pred HHHHhc-CcccchHHHHHHHHHHHHh
Q 048113 312 QEIDAE-GDTVAGTTLRLVEEMIAKL 336 (339)
Q Consensus 312 ~~~~~~-~~~~~~~a~~~l~~~v~~~ 336 (339)
..+... +...|..|..+.+.++..+
T Consensus 238 ~iL~sr~~~~~R~~al~Laa~Ll~~~ 263 (543)
T PF05536_consen 238 DILQSRLTPSQRDPALNLAASLLDLL 263 (543)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 222222 3445666777777776653
No 65
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=0.00029 Score=62.04 Aligned_cols=230 Identities=13% Similarity=0.133 Sum_probs=165.5
Q ss_pred hccCCHHHHHHHHHHHHHhccCCcch----hhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcch
Q 048113 48 LCSQDYEAIEAALLSLLSLACGSERN----KIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGA 123 (339)
Q Consensus 48 L~~~~~~~~~~A~~~L~~Ls~~~~~~----~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~ 123 (339)
|..++..++.-+++.++.+-.+++.| -..++.+|..+.++.++..++.++-..|...+..++..+..-+.|.++..
T Consensus 91 LiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSel 170 (524)
T KOG4413|consen 91 LIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESEL 170 (524)
T ss_pred ccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhccccc
Confidence 44567788888888888777765543 33456889999999999999999999999999999999888888887776
Q ss_pred HHHHH--HHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHH
Q 048113 124 IQRLV--EILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALL 200 (339)
Q Consensus 124 i~~Lv--~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L 200 (339)
...+- .+-.. .+.-.+......+..+.+ +++.....-..|.+..|..-|+..+ +.-++..|+...
T Consensus 171 lDdlhlrnlaak-----------cndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGte-DtLVianciElv 238 (524)
T KOG4413|consen 171 LDDLHLRNLAAK-----------CNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTE-DTLVIANCIELV 238 (524)
T ss_pred CChHHHhHHHhh-----------hhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCc-ceeehhhHHHHH
Confidence 65443 33333 355567777777777755 6777777777899999999998753 567788888888
Q ss_pred HHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC--ChHHHHHHHHHHHHhhcc------CchhHHHHHHhcCChHHHHHhhh
Q 048113 201 ENIVSSSEDALQEIAATCGAIRALVETIEEG--SPQCKEHAVAILLLICKS------CRDKYRSSILKEGVMPGLLQLSV 272 (339)
Q Consensus 201 ~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~------~~~~~~~~~~~~g~i~~L~~ll~ 272 (339)
. .+.....+++.+.+ .|.|+.+..++... +|--+..+......+-.. +++..++.++- ++..-.+++.
T Consensus 239 t-eLaeteHgreflaQ-eglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealii--aidgsfEmiE 314 (524)
T KOG4413|consen 239 T-ELAETEHGREFLAQ-EGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALII--AIDGSFEMIE 314 (524)
T ss_pred H-HHHHHhhhhhhcch-hhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHH--HHHhhHHhhh
Confidence 8 78888889988887 89999999988743 344444444333333211 11222222221 3444566778
Q ss_pred cCCHHHHHHHHHHHHHHhccC
Q 048113 273 DGTWRAKNMARDLLLLLRDCS 293 (339)
Q Consensus 273 ~~~~~~~~~A~~~L~~l~~~~ 293 (339)
..++..++.|..++-.+-++.
T Consensus 315 mnDpdaieaAiDalGilGSnt 335 (524)
T KOG4413|consen 315 MNDPDAIEAAIDALGILGSNT 335 (524)
T ss_pred cCCchHHHHHHHHHHhccCCc
Confidence 889999999999998886654
No 66
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.22 E-value=3.6e-06 Score=51.55 Aligned_cols=41 Identities=27% Similarity=0.352 Sum_probs=37.7
Q ss_pred CHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhc
Q 048113 207 SEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICK 248 (339)
Q Consensus 207 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 248 (339)
+++++..+++ .|+++.|+++|+++++.+++.|+++|.||+.
T Consensus 1 ~~~~~~~i~~-~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVE-AGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHH-TTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHH-cccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4678889997 9999999999999999999999999999973
No 67
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=0.00082 Score=61.45 Aligned_cols=259 Identities=14% Similarity=0.076 Sum_probs=179.5
Q ss_pred HHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC-----Ccch----hhHHhhcCChHHHHH
Q 048113 20 AANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACG-----SERN----KIRIVKSGIVPVLLE 88 (339)
Q Consensus 20 a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-----~~~~----~~~i~~~g~i~~Lv~ 88 (339)
..+-+..++.. -...+++.++++.|+.+|.+.+.++.......|..|+.. +.+. -..+++.++++.|+.
T Consensus 104 ~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvq 183 (536)
T KOG2734|consen 104 IIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQ 183 (536)
T ss_pred HHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHH
Confidence 34444445543 555789999999999999999999999999999999873 1222 335667789999999
Q ss_pred hhcCCChh------HHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhc
Q 048113 89 VLQCQSTT------LIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS 161 (339)
Q Consensus 89 lL~~~~~~------~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs 161 (339)
-+..-++. -...+...+-|+...+ .....+++.|.+.-|++-+.... .-..-...|..+|.-+-
T Consensus 184 nveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~---------~f~aNk~YasEiLaill 254 (536)
T KOG2734|consen 184 NVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKA---------AFDANKQYASEILAILL 254 (536)
T ss_pred HHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhccc---------CcchhHHHHHHHHHHHh
Confidence 87654433 3456677788888644 45777778887777766444321 23345566778888776
Q ss_pred C-CCCChHHHHhcCcHHHHHHHhhcc---c----cCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCCh
Q 048113 162 T-CHQLISPIVSSGVTYCLLQLIHSS---E----KSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSP 233 (339)
Q Consensus 162 ~-~~~~~~~i~~~g~i~~Lv~ll~~~---~----~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~ 233 (339)
. +.+++.......++..+++-+.-+ + +..++.++-..+|| .+...+.+|..++. ..+++-..-+++. ..
T Consensus 255 q~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLC-s~lm~~~nr~~Fl~-~EGlqLm~Lmlr~-Kk 331 (536)
T KOG2734|consen 255 QNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLC-SLLMAPANRERFLK-GEGLQLMNLMLRE-KK 331 (536)
T ss_pred ccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHH-HHhcChhhhhhhhc-cccHHHHHHHHHH-HH
Confidence 6 456888888888999888776221 1 13567788889999 78889999999998 6777776666665 45
Q ss_pred HHHHHHHHHHHHhhccCc-hhHHHHHHhcCChHHHHHh-hhcC--------CH-HHHHHHHHHHHHHh
Q 048113 234 QCKEHAVAILLLICKSCR-DKYRSSILKEGVMPGLLQL-SVDG--------TW-RAKNMARDLLLLLR 290 (339)
Q Consensus 234 ~~~~~a~~~L~~l~~~~~-~~~~~~~~~~g~i~~L~~l-l~~~--------~~-~~~~~A~~~L~~l~ 290 (339)
..+.-++.+|-.....+. ...+..+.+.+++..+..+ ++.+ ++ ..-+..+.+|+.+-
T Consensus 332 ~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~ 399 (536)
T KOG2734|consen 332 VSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLL 399 (536)
T ss_pred HhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHH
Confidence 556778888877766543 2377788888877777766 3222 22 23456666665543
No 68
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.17 E-value=0.00053 Score=63.11 Aligned_cols=186 Identities=14% Similarity=0.178 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHhccCCHH--HHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhc-CCChhHHHHH
Q 048113 25 GKLSRRQKHKLVERGIIAPLISMLCSQDYE--AIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQ-CQSTTLIELT 101 (339)
Q Consensus 25 ~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~--~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a 101 (339)
+.++....+.+...|++..|+.++.+++.+ ++..|.+.|..+.. .+|+..++..| ...++.+-+ ...++.....
T Consensus 166 ~evAq~LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~ 242 (832)
T KOG3678|consen 166 REVAQGLCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSV 242 (832)
T ss_pred HHHHHhhhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHH
Confidence 334444566778899999999999988654 58899999999887 68999999887 444444433 3467888888
Q ss_pred HHHHHHHhc-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC--CCCChHHHHhcCcHHH
Q 048113 102 VAAMLILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST--CHQLISPIVSSGVTYC 178 (339)
Q Consensus 102 ~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~--~~~~~~~i~~~g~i~~ 178 (339)
+.+|.++-. .++....+++.|++..++-.++. .++.+..+++.+|.|... ..+.++.|++..+-+-
T Consensus 243 ~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rR-----------t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EW 311 (832)
T KOG3678|consen 243 AGILEHMFKHSEETCQRLVAAGGLDAVLYWCRR-----------TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEW 311 (832)
T ss_pred HHHHHHHhhhhHHHHHHHHhhcccchheeeccc-----------CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhh
Confidence 899999874 44557788899999999999988 789999999999999876 3577889999888888
Q ss_pred HHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCc---HHHHHHHh
Q 048113 179 LLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGA---IRALVETI 228 (339)
Q Consensus 179 Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~---i~~Lv~lL 228 (339)
|+.+-.+. ++-++.+|+-+.+ .++.+.+.-..+.. .|- +++++..+
T Consensus 312 LF~LA~sk--Del~R~~AClAV~-vlat~KE~E~~Vrk-S~TlaLVEPlva~~ 360 (832)
T KOG3678|consen 312 LFPLAFSK--DELLRLHACLAVA-VLATNKEVEREVRK-SGTLALVEPLVASL 360 (832)
T ss_pred hhhhhcch--HHHHHHHHHHHHh-hhhhhhhhhHHHhh-ccchhhhhhhhhcc
Confidence 88777664 4677888888888 77777666555544 453 34444444
No 69
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.00064 Score=63.88 Aligned_cols=264 Identities=13% Similarity=0.082 Sum_probs=169.7
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHH-HHHHHHh-cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHH-hhcCChH
Q 048113 8 NLLNGERETQIQAANELGKLSRR-QKHKLVE-RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRI-VKSGIVP 84 (339)
Q Consensus 8 ~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i-~~~g~i~ 84 (339)
.+..-++..|.--+.-|..+-.. ....+.- ....+-|..+|+++++++|..+-.+|.++-.. -.+.... --...++
T Consensus 175 riy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~e-I~s~P~s~d~~~~i~ 253 (675)
T KOG0212|consen 175 RIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAE-IRSSPSSMDYDDMIN 253 (675)
T ss_pred HHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-HhcCccccCcccchh
Confidence 33345778888777777666543 3333333 44566678999999999997665555554431 1222222 2346789
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHH---HHHHhhc
Q 048113 85 VLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAI---ATLHNLS 161 (339)
Q Consensus 85 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~---~~L~nLs 161 (339)
.++..+.++++.++..|+..+..+..-.+..-...-+|.+..++..+.++ .....+..+. ..|..+.
T Consensus 254 vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~----------e~~~i~~~a~~~n~~l~~l~ 323 (675)
T KOG0212|consen 254 VLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDT----------EEMSIKEYAQMVNGLLLKLV 323 (675)
T ss_pred hccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCC----------ccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888876555444444567677777776552 1112333222 1244444
Q ss_pred CCCCChHHHHhc-CcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHH
Q 048113 162 TCHQLISPIVSS-GVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAV 240 (339)
Q Consensus 162 ~~~~~~~~i~~~-g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~ 240 (339)
..+..+.. ++. ..++.+.+.+.+. ..+.+..|+.-+. .+-....+.--.-. ....+.|+.-|.+++..+...++
T Consensus 324 s~~~~~~~-id~~~ii~vl~~~l~~~--~~~tri~~L~Wi~-~l~~~~p~ql~~h~-~~if~tLL~tLsd~sd~vvl~~L 398 (675)
T KOG0212|consen 324 SSERLKEE-IDYGSIIEVLTKYLSDD--REETRIAVLNWII-LLYHKAPGQLLVHN-DSIFLTLLKTLSDRSDEVVLLAL 398 (675)
T ss_pred hhhhhccc-cchHHHHHHHHHHhhcc--hHHHHHHHHHHHH-HHHhhCcchhhhhc-cHHHHHHHHhhcCchhHHHHHHH
Confidence 44443433 444 3566777777764 4677777885555 34333333333332 57889999999999999999999
Q ss_pred HHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhcc
Q 048113 241 AILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDC 292 (339)
Q Consensus 241 ~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 292 (339)
..+.++|.++.. ... -..+..|.++....+.-...++.-+++.++.-
T Consensus 399 ~lla~i~~s~~~--~~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 399 SLLASICSSSNS--PNL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred HHHHHHhcCccc--ccH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence 999999987533 110 12456667777777777788888899888753
No 70
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=0.00097 Score=63.44 Aligned_cols=298 Identities=15% Similarity=0.130 Sum_probs=188.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccCCHHHHH-HHHHHHHHhccCCcchhhHHhhc
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQDYEAIE-AALLSLLSLACGSERNKIRIVKS 80 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~-~A~~~L~~Ls~~~~~~~~~i~~~ 80 (339)
+-+.+++.+.....+..|+..+..+..+ .-..+.+.+.+..|-....+..+..++ .+..+....+.+-. ...+.
T Consensus 137 ~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg----~~~EP 212 (569)
T KOG1242|consen 137 ELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG----PPFEP 212 (569)
T ss_pred HHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC----CCCCc
Confidence 4566677777888888888888888887 777777888888888888776544443 23333333333111 23344
Q ss_pred CChHHHHHhh---cCCChhHHHHHHHHHHHHhc-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHH
Q 048113 81 GIVPVLLEVL---QCQSTTLIELTVAAMLILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIAT 156 (339)
Q Consensus 81 g~i~~Lv~lL---~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~ 156 (339)
+.+|.+-.++ .+..+.+|..|..+...+.. .+.... .-.+|.++.-+.. .....+..++..
T Consensus 213 yiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~-----------~kWrtK~aslel 277 (569)
T KOG1242|consen 213 YIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLE-----------AKWRTKMASLEL 277 (569)
T ss_pred hHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHH-----------HhhhhHHHHHHH
Confidence 5555554444 44567788877776655442 111111 1145555555544 466778889999
Q ss_pred HHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHH
Q 048113 157 LHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCK 236 (339)
Q Consensus 157 L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 236 (339)
|..+.......-..+-..++|.+.+.|.++ ++++++.+..++. .++..-+|.. |. -.+|.|++-+.+++.+..
T Consensus 278 lg~m~~~ap~qLs~~lp~iiP~lsevl~DT--~~evr~a~~~~l~-~~~svidN~d-I~---~~ip~Lld~l~dp~~~~~ 350 (569)
T KOG1242|consen 278 LGAMADCAPKQLSLCLPDLIPVLSEVLWDT--KPEVRKAGIETLL-KFGSVIDNPD-IQ---KIIPTLLDALADPSCYTP 350 (569)
T ss_pred HHHHHHhchHHHHHHHhHhhHHHHHHHccC--CHHHHHHHHHHHH-HHHHhhccHH-HH---HHHHHHHHHhcCcccchH
Confidence 999888777777777788999999999886 5899999998888 5555444443 32 267889998888664333
Q ss_pred HHHHHHHHHhhc---cCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHH
Q 048113 237 EHAVAILLLICK---SCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQE 313 (339)
Q Consensus 237 ~~a~~~L~~l~~---~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~ 313 (339)
+ +...|..=.+ -.++ ... -.+|.|.+=+...+...+++++.+..|++.--+. . +--..-+..++..
T Consensus 351 e-~~~~L~~ttFV~~V~~p-sLa-----lmvpiL~R~l~eRst~~kr~t~~IidNm~~LveD---p-~~lapfl~~Llp~ 419 (569)
T KOG1242|consen 351 E-CLDSLGATTFVAEVDAP-SLA-----LMVPILKRGLAERSTSIKRKTAIIIDNMCKLVED---P-KDLAPFLPSLLPG 419 (569)
T ss_pred H-HHHhhcceeeeeeecch-hHH-----HHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcC---H-HHHhhhHHHHhhH
Confidence 3 2222221111 1111 111 1345555556667788899999999999986532 1 1234445555555
Q ss_pred HH---hcC-cccchHHHHHHHHHHHHhc
Q 048113 314 ID---AEG-DTVAGTTLRLVEEMIAKLS 337 (339)
Q Consensus 314 ~~---~~~-~~~~~~a~~~l~~~v~~~~ 337 (339)
+. .+- .++|..|.|.|..+++++.
T Consensus 420 lk~~~~d~~PEvR~vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 420 LKENLDDAVPEVRAVAARALGALLERLG 447 (569)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence 54 333 6678889999999988864
No 71
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.0025 Score=64.12 Aligned_cols=137 Identities=18% Similarity=0.179 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHH
Q 048113 16 TQIQAANELGKLSRRQK-------HKLVERGIIAPLISMLCS-QDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLL 87 (339)
Q Consensus 16 ~~~~a~~~L~~l~~~~~-------~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv 87 (339)
...-++.+|+|+...+. ....--|..+-+..++.. .++.++.-|+..+..++. +.+.-..++..|.+..|+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHH
Confidence 44568888999877521 122235777777777765 588999999999999998 788888999999999999
Q ss_pred HhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCC
Q 048113 88 EVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCH 164 (339)
Q Consensus 88 ~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~ 164 (339)
.+|.+. |..++.++.+|+.|+++...-..-.+.|++..+.+++-.. .++..+..|+..|..|..++
T Consensus 1820 ~lLHS~-PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~----------~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1820 TLLHSQ-PSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLT----------NSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred HHHhcC-hHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhcc----------CcHHHHHHHHHHHHHhhhcc
Confidence 999765 7789999999999999888766666888888888877553 68888889999998886543
No 72
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=8.4e-05 Score=70.86 Aligned_cols=279 Identities=15% Similarity=0.125 Sum_probs=168.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHh-cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhc
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR-QKHKLVE-RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKS 80 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~ 80 (339)
+.++...++.++..|..|+.++-.+... ....+.. ...++.+-.+-.+.++++|.+.++++..|-.- ...|..=.-.
T Consensus 177 pkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev-r~dkl~phl~ 255 (885)
T KOG2023|consen 177 PKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV-RPDKLVPHLD 255 (885)
T ss_pred HHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh-cHHhcccchH
Confidence 4566777899999999999998776544 4444443 33556666777778999999999999998873 3323222234
Q ss_pred CChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHh--cchHHHHHHHhcCC--------CCCCCC-------c--
Q 048113 81 GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIAS--SGAIQRLVEILNGD--------LADDDN-------S-- 141 (339)
Q Consensus 81 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~--~g~i~~Lv~ll~~~--------~~~~~~-------~-- 141 (339)
++|+.++...+..++++-..|+.....++..+-++..+.. ...||.|++=+.-. +.++|. +
T Consensus 256 ~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIk 335 (885)
T KOG2023|consen 256 NIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIK 335 (885)
T ss_pred HHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhcc
Confidence 7788888888888999999999999999988866665542 23455554322111 011110 0
Q ss_pred --------cCC--------------------CCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccC--ch
Q 048113 142 --------YGR--------------------ISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKS--SG 191 (339)
Q Consensus 142 --------~~~--------------------~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~--~~ 191 (339)
.+. .+...|+.++.+|--|+. +.....++.++.+|+..-.+ =.
T Consensus 336 PRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~~~W~ 408 (885)
T KOG2023|consen 336 PRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSSEEWK 408 (885)
T ss_pred chhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCcchhh
Confidence 000 012344444444433322 22223566666666553222 34
Q ss_pred HHHHHHHHHHHhhcCCHhhhHHHHhh-CCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHh
Q 048113 192 LTEKAIALLENIVSSSEDALQEIAAT-CGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQL 270 (339)
Q Consensus 192 ~~~~a~~~L~n~l~~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~l 270 (339)
+++.+.-+|+ .++.. +-.-++.+ ...+|-|+++|.+..+.++.-.+|.|...+..--..-+.... ..++..|.+.
T Consensus 409 vrEagvLAlG-AIAEG--cM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f-~pvL~~ll~~ 484 (885)
T KOG2023|consen 409 VREAGVLALG-AIAEG--CMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF-KPVLEGLLRR 484 (885)
T ss_pred hhhhhHHHHH-HHHHH--HhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh-HHHHHHHHHH
Confidence 5666666666 33221 11111110 135778888998888999999999998776431111111111 1245556666
Q ss_pred hhcCCHHHHHHHHHHHHHHhccC
Q 048113 271 SVDGTWRAKNMARDLLLLLRDCS 293 (339)
Q Consensus 271 l~~~~~~~~~~A~~~L~~l~~~~ 293 (339)
+.+++.++|+.|+.+..-+-...
T Consensus 485 llD~NK~VQEAAcsAfAtleE~A 507 (885)
T KOG2023|consen 485 LLDSNKKVQEAACSAFATLEEEA 507 (885)
T ss_pred HhcccHHHHHHHHHHHHHHHHhc
Confidence 77899999999999988886543
No 73
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.0032 Score=60.93 Aligned_cols=252 Identities=13% Similarity=0.165 Sum_probs=169.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCCh
Q 048113 4 MLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIV 83 (339)
Q Consensus 4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i 83 (339)
-++-+|.++-+.+|.+|+-.+..+...+.+++ ...+|.|++-|.++||.++..|..+++.|++.+|.|...+ -
T Consensus 148 Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----A 220 (877)
T KOG1059|consen 148 DVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----A 220 (877)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----c
Confidence 35778899999999999999988887655544 3468999999999999999999999999999999887554 4
Q ss_pred HHHHHhhcCCC-hhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhh--
Q 048113 84 PVLLEVLQCQS-TTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNL-- 160 (339)
Q Consensus 84 ~~Lv~lL~~~~-~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nL-- 160 (339)
|.+.+++...+ .=+....+....+|+--++- ++ ...+++|..++.++ .-..+...++.++..-
T Consensus 221 P~ffkllttSsNNWmLIKiiKLF~aLtplEPR---Lg-KKLieplt~li~sT----------~AmSLlYECvNTVVa~s~ 286 (877)
T KOG1059|consen 221 PLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR---LG-KKLIEPITELMEST----------VAMSLLYECVNTVVAVSM 286 (877)
T ss_pred HHHHHHHhccCCCeehHHHHHHHhhccccCch---hh-hhhhhHHHHHHHhh----------HHHHHHHHHHHHheeehh
Confidence 78888876653 33455556677777755542 11 22689999999884 3344555555555433
Q ss_pred cCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHH
Q 048113 161 STCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAV 240 (339)
Q Consensus 161 s~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~ 240 (339)
+....+...-++ -+++.|-.++.+. +..++--++-++.-.+-.++....+ --+.+++.|.+.++.++-.|+
T Consensus 287 s~g~~d~~asiq-LCvqKLr~fieds--DqNLKYlgLlam~KI~ktHp~~Vqa------~kdlIlrcL~DkD~SIRlrAL 357 (877)
T KOG1059|consen 287 SSGMSDHSASIQ-LCVQKLRIFIEDS--DQNLKYLGLLAMSKILKTHPKAVQA------HKDLILRCLDDKDESIRLRAL 357 (877)
T ss_pred ccCCCCcHHHHH-HHHHHHhhhhhcC--CccHHHHHHHHHHHHhhhCHHHHHH------hHHHHHHHhccCCchhHHHHH
Confidence 222222322222 2577777778774 5788888887777344445543222 235678889999999999999
Q ss_pred HHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCC-HHHH-HHHHHHHHHHhccC
Q 048113 241 AILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGT-WRAK-NMARDLLLLLRDCS 293 (339)
Q Consensus 241 ~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~-~~A~~~L~~l~~~~ 293 (339)
-.|.-+.... + .++ ++..|+..+...+ ..-+ +....++..++.++
T Consensus 358 dLl~gmVskk-N-l~e------IVk~LM~~~~~ae~t~yrdell~~II~iCS~sn 404 (877)
T KOG1059|consen 358 DLLYGMVSKK-N-LME------IVKTLMKHVEKAEGTNYRDELLTRIISICSQSN 404 (877)
T ss_pred HHHHHHhhhh-h-HHH------HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhh
Confidence 9998887542 1 222 4666766544333 3444 55555666666543
No 74
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.08 E-value=2.1e-05 Score=56.84 Aligned_cols=87 Identities=22% Similarity=0.264 Sum_probs=71.2
Q ss_pred hHHHHHHh-ccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHH
Q 048113 41 IAPLISML-CSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA 119 (339)
Q Consensus 41 i~~Lv~lL-~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~ 119 (339)
|+.|++.| +++++.++..|+++|+.+-. + .++|.|+.+++++++.++..|+.+|..+ .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~ 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRI----------G 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCC----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHh----------C
Confidence 57899988 88899999999999985432 1 4589999999999999999999999876 2
Q ss_pred hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113 120 SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH 158 (339)
Q Consensus 120 ~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~ 158 (339)
....++.|.+++.++ .+..++..|+.+|.
T Consensus 60 ~~~~~~~L~~~l~~~----------~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDD----------DDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-----------SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCC----------CcHHHHHHHHhhcC
Confidence 455899999999884 56777888888874
No 75
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.00016 Score=67.70 Aligned_cols=228 Identities=18% Similarity=0.162 Sum_probs=161.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH--HH-HHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR--QK-HKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK 79 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~ 79 (339)
+.|+.+|.++.+++|.-+=-++.++..+ +. ..+.-...++.++.-+.++++.+|..|+.-+..+-. -+.......-
T Consensus 211 dGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~-i~g~~~l~~~ 289 (675)
T KOG0212|consen 211 DGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVK-IPGRDLLLYL 289 (675)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhc-CCCcchhhhh
Confidence 3578888889999997777777777665 22 223346688999999999999999999999988888 3444444445
Q ss_pred cCChHHHHHhhcCCChh-HHHHHHH---HHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHH
Q 048113 80 SGIVPVLLEVLQCQSTT-LIELTVA---AMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIA 155 (339)
Q Consensus 80 ~g~i~~Lv~lL~~~~~~-~~~~a~~---~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~ 155 (339)
.|++..+++++.+..+. +++.+.. .+..+...+..++.+.=...++.|.+.+.+ +..+.+..++.
T Consensus 290 s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~-----------~~~~tri~~L~ 358 (675)
T KOG0212|consen 290 SGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSD-----------DREETRIAVLN 358 (675)
T ss_pred hhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhc-----------chHHHHHHHHH
Confidence 68888888888877553 5554432 233344444444443334478899999988 78999999999
Q ss_pred HHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHH
Q 048113 156 TLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQC 235 (339)
Q Consensus 156 ~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~ 235 (339)
-+..|-....+.-..-.....+.|++-|.+. ++.+...++..++ .++.++....- -.++..|+++.+......
T Consensus 359 Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~--sd~vvl~~L~lla-~i~~s~~~~~~----~~fl~sLL~~f~e~~~~l 431 (675)
T KOG0212|consen 359 WIILLYHKAPGQLLVHNDSIFLTLLKTLSDR--SDEVVLLALSLLA-SICSSSNSPNL----RKFLLSLLEMFKEDTKLL 431 (675)
T ss_pred HHHHHHhhCcchhhhhccHHHHHHHHhhcCc--hhHHHHHHHHHHH-HHhcCcccccH----HHHHHHHHHHHhhhhHHH
Confidence 9888866555554444557888999999885 5789999999999 66666544311 135566777777766667
Q ss_pred HHHHHHHHHHhhcc
Q 048113 236 KEHAVAILLLICKS 249 (339)
Q Consensus 236 ~~~a~~~L~~l~~~ 249 (339)
...+..++..+|..
T Consensus 432 ~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 432 EVRGNLIIRQLCLL 445 (675)
T ss_pred HhhhhHHHHHHHHH
Confidence 77777788777753
No 76
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.05 E-value=0.0012 Score=62.64 Aligned_cols=238 Identities=17% Similarity=0.137 Sum_probs=158.7
Q ss_pred cCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccC-----CHHHHHHHHHHHHHhccCCcchhhHHhhc-
Q 048113 10 LNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQ-----DYEAIEAALLSLLSLACGSERNKIRIVKS- 80 (339)
Q Consensus 10 ~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~-----~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~- 80 (339)
.+.++.+..+|+++|+|+.-. .|..+.+.|..+.+++.|+.. +.++.-...+.|.-++...+..+..+++.
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~ 121 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEH 121 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHh
Confidence 356889999999999998875 899999999999999999886 78889999999999998777788777765
Q ss_pred CChHHHHHhhcC-----------------CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccC
Q 048113 81 GIVPVLLEVLQC-----------------QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYG 143 (339)
Q Consensus 81 g~i~~Lv~lL~~-----------------~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~ 143 (339)
+++..++..|.. .+.+....++.+++|+....+....-...+.++.++.++..-. ......
T Consensus 122 ~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l--~~~~~~ 199 (446)
T PF10165_consen 122 HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLL--PPPPSS 199 (446)
T ss_pred hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHh--ccCCCC
Confidence 788877776632 0234567788899999865543322123445666666554310 000001
Q ss_pred CCCHHHHHHHHHHHHhhcCC-CCC-------hHH----HHhcCcHHHHHHHhhcc----cc--CchHHHHHHHHHHHhhc
Q 048113 144 RISVQAKIDAIATLHNLSTC-HQL-------ISP----IVSSGVTYCLLQLIHSS----EK--SSGLTEKAIALLENIVS 205 (339)
Q Consensus 144 ~~~~~~~~~a~~~L~nLs~~-~~~-------~~~----i~~~g~i~~Lv~ll~~~----~~--~~~~~~~a~~~L~n~l~ 205 (339)
........+++.+|.|+-.. .+. ... ......+..|+++|... .. ..+.....+.+|. .++
T Consensus 200 ~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~-~~~ 278 (446)
T PF10165_consen 200 PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLT-RLA 278 (446)
T ss_pred CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHH-HHH
Confidence 13456778899999988321 111 101 11224677777777542 11 1245666677777 444
Q ss_pred CC-HhhhHHHHh---------------hCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccC
Q 048113 206 SS-EDALQEIAA---------------TCGAIRALVETIEEGSPQCKEHAVAILLLICKSC 250 (339)
Q Consensus 206 ~~-~~~~~~i~~---------------~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 250 (339)
.. ...|+.+.. ....-..|++++.+..+.++..+...|+.||..+
T Consensus 279 ~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 279 RAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred HhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence 43 445544432 2345678899999888999999999999999664
No 77
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.05 E-value=0.0016 Score=60.96 Aligned_cols=153 Identities=18% Similarity=0.113 Sum_probs=115.7
Q ss_pred cCChHHHHHHhc-cCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchH
Q 048113 38 RGIIAPLISMLC-SQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKL 116 (339)
Q Consensus 38 ~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~ 116 (339)
..+++.++..|. .++++++..++.++..... + .++..|+..|.+.++.++..++.+|..
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~--------- 112 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGW--------- 112 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhc---------
Confidence 457888999884 5677777766655532221 1 137899999999999899999888853
Q ss_pred HHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHH
Q 048113 117 EIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKA 196 (339)
Q Consensus 117 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a 196 (339)
+...+..+.|+.++.+ .++.++..++.++... .....+.+..+|++. +..++..|
T Consensus 113 -i~~~~a~~~L~~~L~~-----------~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~--d~~Vra~A 167 (410)
T TIGR02270 113 -LGGRQAEPWLEPLLAA-----------SEPPGRAIGLAALGAH-----------RHDPGPALEAALTHE--DALVRAAA 167 (410)
T ss_pred -CCchHHHHHHHHHhcC-----------CChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCC--CHHHHHHH
Confidence 4445678899999988 7999998888777761 123456888889864 67899999
Q ss_pred HHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhh
Q 048113 197 IALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLIC 247 (339)
Q Consensus 197 ~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 247 (339)
+.+|+ . +.. ...++.|...+.+.++.++..|+.++..+.
T Consensus 168 ~raLG-~----------l~~-~~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 168 LRALG-E----------LPR-RLSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred HHHHH-h----------hcc-ccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 99999 3 223 567888899999999999999999887664
No 78
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.02 E-value=0.0016 Score=60.12 Aligned_cols=237 Identities=15% Similarity=0.076 Sum_probs=162.4
Q ss_pred HHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCC--ChhHHHHHHHHHHHHh
Q 048113 32 KHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQ--STTLIELTVAAMLILS 109 (339)
Q Consensus 32 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs 109 (339)
+..+.-....+.+..++=+++.+++..|.++++.+.. ++..-..+.+.+.--.++..|..+ +..-+++|+..+..+.
T Consensus 18 ~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l 96 (371)
T PF14664_consen 18 KYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFL 96 (371)
T ss_pred hhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHH
Confidence 3333334445555544444559999999999999999 688888999988888888888765 3457889999998887
Q ss_pred cCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccC
Q 048113 110 SCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKS 189 (339)
Q Consensus 110 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 189 (339)
..+.+... ...|.+..++.+..+ .+...+..++.+|+.++..+. ..+..+|++..|++.+.++ .
T Consensus 97 ~~~~~~~~-~~~~vvralvaiae~-----------~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~--~ 160 (371)
T PF14664_consen 97 EIKKGPKE-IPRGVVRALVAIAEH-----------EDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDG--S 160 (371)
T ss_pred HhcCCccc-CCHHHHHHHHHHHhC-----------CchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhc--c
Confidence 65443222 356789999999988 688899999999999987433 4567889999999999874 2
Q ss_pred chHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC-------Ch--HHHHHHHHHHHHhhc-cCchhHHHHHH
Q 048113 190 SGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEG-------SP--QCKEHAVAILLLICK-SCRDKYRSSIL 259 (339)
Q Consensus 190 ~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~-------~~--~~~~~a~~~L~~l~~-~~~~~~~~~~~ 259 (339)
.++.+..+.++- .+-.+|..|+.+.. .--++.++.-+.+. +. .....+..++..+-. .++ .-..-.
T Consensus 161 ~~~~~~l~~~lL-~lLd~p~tR~yl~~-~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~G--Ll~l~~ 236 (371)
T PF14664_consen 161 FSISESLLDTLL-YLLDSPRTRKYLRP-GFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPG--LLYLSM 236 (371)
T ss_pred HhHHHHHHHHHH-HHhCCcchhhhhcC-CccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCc--eeeeec
Confidence 447788888888 78888888877764 23355555544332 11 123333444433322 211 111001
Q ss_pred h-cCChHHHHHhhhcCCHHHHHHHHHHHHHH
Q 048113 260 K-EGVMPGLLQLSVDGTWRAKNMARDLLLLL 289 (339)
Q Consensus 260 ~-~g~i~~L~~ll~~~~~~~~~~A~~~L~~l 289 (339)
. ..++..|+..+..+++.+++.-..++.-+
T Consensus 237 ~~~~~lksLv~~L~~p~~~ir~~Ildll~dl 267 (371)
T PF14664_consen 237 NDFRGLKSLVDSLRLPNPEIRKAILDLLFDL 267 (371)
T ss_pred CCchHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 1 24677888888888888888888877555
No 79
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.94 E-value=0.00032 Score=60.52 Aligned_cols=176 Identities=17% Similarity=0.139 Sum_probs=111.3
Q ss_pred cCCCHHHHHHHHHHHHHHHHHH-----HHHHHh--cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113 10 LNGERETQIQAANELGKLSRRQ-----KHKLVE--RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI 82 (339)
Q Consensus 10 ~s~~~~~~~~a~~~L~~l~~~~-----~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~ 82 (339)
.+.+|+.|..|+..|+.+..++ ...+.+ ...+..+...+.+....+...|+.++..++......-..+ -...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence 5789999999999999998762 333332 3566777788888788899999999999998533322222 3357
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113 83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST 162 (339)
Q Consensus 83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~ 162 (339)
+|.|++.+.++...++..|..+|..+...-.....+ ..+.+...+.+ .++.++..++..|..+..
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~-----------Kn~~vR~~~~~~l~~~l~ 160 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKS-----------KNPQVREECAEWLAIILE 160 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT------------S-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhC-----------CCHHHHHHHHHHHHHHHH
Confidence 899999999998899999999999988754421211 25555566666 799999999999998865
Q ss_pred -CCCChHHHHh----cCcHHHHHHHhhccccCchHHHHHHHHHHHhh
Q 048113 163 -CHQLISPIVS----SGVTYCLLQLIHSSEKSSGLTEKAIALLENIV 204 (339)
Q Consensus 163 -~~~~~~~i~~----~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l 204 (339)
.+.....+-. ...++.+.+.+.+. +++++..|-.++. .+
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~l~~~l~D~--~~~VR~~Ar~~~~-~l 204 (228)
T PF12348_consen 161 KWGSDSSVLQKSAFLKQLVKALVKLLSDA--DPEVREAARECLW-AL 204 (228)
T ss_dssp T-----GGG--HHHHHHHHHHHHHHHTSS---HHHHHHHHHHHH-HH
T ss_pred HccchHhhhcccchHHHHHHHHHHHCCCC--CHHHHHHHHHHHH-HH
Confidence 3322222222 23566777777774 5889998888888 44
No 80
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.00018 Score=67.06 Aligned_cols=200 Identities=11% Similarity=0.123 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcC
Q 048113 16 TQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQC 92 (339)
Q Consensus 16 ~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~ 92 (339)
.-..++.+|..+++. -|.-+.+..+++.|++.|+.++..+.-.++..++|+......-+..+.+.|.+..|+.++.+
T Consensus 405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence 334566677777776 77788889999999999998776677778889999998777889999999999999999999
Q ss_pred CChhHHHHHHHHHHHHhcCccc--hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CC---CC
Q 048113 93 QSTTLIELTVAAMLILSSCLEN--KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CH---QL 166 (339)
Q Consensus 93 ~~~~~~~~a~~~L~nLs~~~~~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~---~~ 166 (339)
.+..+|.+..|.+..+..+.++ +-.....-++.+++++... ....++...+..|.|+.- .. +.
T Consensus 485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~ND-----------pc~~vq~q~lQilrNftc~~~knEks 553 (743)
T COG5369 485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTND-----------PCFKVQHQVLQILRNFTCDTSKNEKS 553 (743)
T ss_pred chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcC-----------cccccHHHHHHHHHhccccccccccc
Confidence 9999999999999999976554 4455566779999999988 788999999999999943 22 33
Q ss_pred hHHHHhcC----cHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHh
Q 048113 167 ISPIVSSG----VTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETI 228 (339)
Q Consensus 167 ~~~i~~~g----~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL 228 (339)
+..+.+.. ....|.+.+.... +..+.+. +.+|-++.+.++.-+..+..+...+..+-.+|
T Consensus 554 kdv~~K~~p~~ylfk~l~~k~e~~n-p~~i~~~-~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 554 KDVFIKATPRRYLFKRLIDKYEENN-PMEILEG-CYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred ceeEEecChHHHHHHHHHHHHHhcC-chhhhhh-HHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 44444332 4455666666542 2444444 55555355555555555554445555555544
No 81
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.88 E-value=0.00011 Score=52.97 Aligned_cols=87 Identities=21% Similarity=0.282 Sum_probs=69.1
Q ss_pred hHHHHHhh-cCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhc
Q 048113 83 VPVLLEVL-QCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS 161 (339)
Q Consensus 83 i~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs 161 (339)
||.|++.| +++++.++..++.+|.++ .....++.|++++++ +++.++..|+.+|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d-----------~~~~vr~~a~~aL~~i~ 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKD-----------EDPMVRRAAARALGRIG 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTS-----------SSHHHHHHHHHHHHCCH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcC-----------CCHHHHHHHHHHHHHhC
Confidence 57899988 778999999999998832 223569999999977 89999999999999872
Q ss_pred CCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHH
Q 048113 162 TCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLE 201 (339)
Q Consensus 162 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~ 201 (339)
...+++.|.+++.+++ +..++..|..+|+
T Consensus 60 ----------~~~~~~~L~~~l~~~~-~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ----------DPEAIPALIKLLQDDD-DEVVREAAAEALG 88 (88)
T ss_dssp ----------HHHTHHHHHHHHTC-S-SHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHcCCC-cHHHHHHHHhhcC
Confidence 3358999999998853 4556788887764
No 82
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.87 E-value=0.0013 Score=57.79 Aligned_cols=228 Identities=14% Similarity=0.077 Sum_probs=155.3
Q ss_pred CHHHHHHHHHHHHHhccCCcchhhHHh-hcCChHHHHHhhcCC--ChhHHHHHHHHHHHHhcCccchHHHHhc-chHHHH
Q 048113 52 DYEAIEAALLSLLSLACGSERNKIRIV-KSGIVPVLLEVLQCQ--STTLIELTVAAMLILSSCLENKLEIASS-GAIQRL 127 (339)
Q Consensus 52 ~~~~~~~A~~~L~~Ls~~~~~~~~~i~-~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~~~~~i~~~-g~i~~L 127 (339)
++-.+.-|.+++.++.. .++.|..+- +...-..++..+++. +.+++-+.+.+++.|+.++.+.+.|.+. +.+.-|
T Consensus 162 ~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl 240 (432)
T COG5231 162 DFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 44567788999999999 677776544 455667788888764 5788999999999999988887766654 578888
Q ss_pred HHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCC-ChHHHHhcCcHHHHHHHhhcc-ccCchHHHHHH---HHHH
Q 048113 128 VEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQ-LISPIVSSGVTYCLLQLIHSS-EKSSGLTEKAI---ALLE 201 (339)
Q Consensus 128 v~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~-~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~~~a~---~~L~ 201 (339)
+++.+.. ....+...++..+.|++. .+. ....+.-.|-+.+-++.|... ..+++++..-- ..|-
T Consensus 241 i~iVk~~----------~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~ 310 (432)
T COG5231 241 IAIVKER----------AKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLV 310 (432)
T ss_pred HHHHHHH----------HHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 8888773 467788889999999987 443 234444456566666666442 22344332211 1111
Q ss_pred H------------------hhcCC---------HhhhHHHHh-hCCcHHHHHHHhhcCChH-HHHHHHHHHHHhhccCch
Q 048113 202 N------------------IVSSS---------EDALQEIAA-TCGAIRALVETIEEGSPQ-CKEHAVAILLLICKSCRD 252 (339)
Q Consensus 202 n------------------~l~~~---------~~~~~~i~~-~~g~i~~Lv~lL~~~~~~-~~~~a~~~L~~l~~~~~~ 252 (339)
+ .+... ..|..++.+ ....+..|.++++..++. .-..|+.-+..+....|+
T Consensus 311 ~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE 390 (432)
T COG5231 311 QNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE 390 (432)
T ss_pred hhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch
Confidence 0 01111 122222222 123578888899886654 334566667777776655
Q ss_pred hHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113 253 KYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 253 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 291 (339)
.+..+.+.|+-..++.++.+++++++..|..+++.+-.
T Consensus 391 -~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 391 -INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred -HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 88999999999999999999999999999999987643
No 83
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.0043 Score=60.43 Aligned_cols=298 Identities=13% Similarity=0.088 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHh--cCChHHHHHH-hcc-CCHHHHHHHHHHHHHhccCCcch-hhHHhhcCChHHHHH
Q 048113 15 ETQIQAANELGKLSRR-QKHKLVE--RGIIAPLISM-LCS-QDYEAIEAALLSLLSLACGSERN-KIRIVKSGIVPVLLE 88 (339)
Q Consensus 15 ~~~~~a~~~L~~l~~~-~~~~i~~--~g~i~~Lv~l-L~~-~~~~~~~~A~~~L~~Ls~~~~~~-~~~i~~~g~i~~Lv~ 88 (339)
..+..++++|+-++.+ ....+.+ ..++..++.- .+. ++..+|-.|+.+|.+.-.-...| ....-..=.+...+.
T Consensus 145 ~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcE 224 (859)
T KOG1241|consen 145 MVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCE 224 (859)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeee
Confidence 4788899999999988 5544443 4466666653 333 37789999999997644311101 111222234566777
Q ss_pred hhcCCChhHHHHHHHHHHHHhc-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCC-C-
Q 048113 89 VLQCQSTTLIELTVAAMLILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCH-Q- 165 (339)
Q Consensus 89 lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~-~- 165 (339)
..++++.+++..|..+|..+.+ ..+.-...........-+.-+++ .++++...++..=+++|..+ +
T Consensus 225 atq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks-----------~~deValQaiEFWsticeEEiD~ 293 (859)
T KOG1241|consen 225 ATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKS-----------DNDEVALQAIEFWSTICEEEIDL 293 (859)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CcHHHHHHHHHHHHHHHHHHHHH
Confidence 7888899999999999999874 33333333344445555566667 78888888888777666421 1
Q ss_pred ---------------ChHHHHhc--CcHHHHHHHhhcccc-----CchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHH
Q 048113 166 ---------------LISPIVSS--GVTYCLLQLIHSSEK-----SSGLTEKAIALLENIVSSSEDALQEIAATCGAIRA 223 (339)
Q Consensus 166 ---------------~~~~i~~~--g~i~~Lv~ll~~~~~-----~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~ 223 (339)
++.....+ +++|.|+++|...++ +=.....|..+|. +.+. .+. ...+++
T Consensus 294 ~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~-l~A~-------~~~-D~Iv~~ 364 (859)
T KOG1241|consen 294 AIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLM-LFAQ-------CVG-DDIVPH 364 (859)
T ss_pred HHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHH-HHHH-------Hhc-ccchhh
Confidence 11111121 678888888855211 1123344444444 3322 222 345555
Q ss_pred HHHHh----hcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchh
Q 048113 224 LVETI----EEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRS 299 (339)
Q Consensus 224 Lv~lL----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~ 299 (339)
.+.++ ++++=+-++.|+.++..+-....+ .+-.-+..+++|.++.++.+++-.++..++|.+..++++-++....
T Consensus 365 Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~-~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n 443 (859)
T KOG1241|consen 365 VLPFIEENIQNPDWRNREAAVMAFGSILEGPEP-DKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIIN 443 (859)
T ss_pred hHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch-hhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhccc
Confidence 55555 455666778888888887766433 4444456789999999999888889999999999998876422111
Q ss_pred hhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHHH
Q 048113 300 KQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIA 334 (339)
Q Consensus 300 ~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v~ 334 (339)
...-...+.-++..+ -|...++.++-..+-++++
T Consensus 444 ~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 444 QELLQSKLSALLEGL-NDEPRVASNVCWAFISLAE 477 (859)
T ss_pred HhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHH
Confidence 111122222222221 2334455565555555543
No 84
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.85 E-value=0.004 Score=56.98 Aligned_cols=194 Identities=21% Similarity=0.243 Sum_probs=129.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI 82 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~ 82 (339)
+.++..+.+.++.+|..|+..+..+. ....++.+..++.+.++.+|..|+.+|+.+-. ...
T Consensus 46 ~~~~~~l~~~~~~vr~~aa~~l~~~~--------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~-----------~~a 106 (335)
T COG1413 46 DELLKLLEDEDLLVRLSAAVALGELG--------SEEAVPLLRELLSDEDPRVRDAAADALGELGD-----------PEA 106 (335)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhhhc--------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC-----------hhH
Confidence 56777888888888888888865554 45678899999999999999999997776655 236
Q ss_pred hHHHHHhhc-CCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCc-cCCCCHHHHHHHHHHHHhh
Q 048113 83 VPVLLEVLQ-CQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNS-YGRISVQAKIDAIATLHNL 160 (339)
Q Consensus 83 i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~-~~~~~~~~~~~a~~~L~nL 160 (339)
++.|+..+. +++..++..+.++|..+-. ...+.+++..++....+..-. +......++..+...|..+
T Consensus 107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~ 176 (335)
T COG1413 107 VPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL 176 (335)
T ss_pred HHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc
Confidence 788999998 4788899999999876543 234778888887621000000 0000013444444444443
Q ss_pred cCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHH
Q 048113 161 STCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAV 240 (339)
Q Consensus 161 s~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~ 240 (339)
- +.-.++.+...+.+. ...++..+..+|+ .+.... ....+.+...+.+++..++..++
T Consensus 177 ~----------~~~~~~~l~~~l~~~--~~~vr~~Aa~aL~-~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~ 234 (335)
T COG1413 177 G----------DPEAIPLLIELLEDE--DADVRRAAASALG-QLGSEN---------VEAADLLVKALSDESLEVRKAAL 234 (335)
T ss_pred C----------ChhhhHHHHHHHhCc--hHHHHHHHHHHHH-Hhhcch---------hhHHHHHHHHhcCCCHHHHHHHH
Confidence 1 123577888888875 3578888888888 433332 14557777788888888887777
Q ss_pred HHHHHhh
Q 048113 241 AILLLIC 247 (339)
Q Consensus 241 ~~L~~l~ 247 (339)
.+|..+-
T Consensus 235 ~~l~~~~ 241 (335)
T COG1413 235 LALGEIG 241 (335)
T ss_pred HHhcccC
Confidence 7766653
No 85
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.85 E-value=0.00052 Score=64.66 Aligned_cols=263 Identities=16% Similarity=0.127 Sum_probs=140.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHH-HHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRRQ-KHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSG 81 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g 81 (339)
+.|-.+|.+..+.+..++++.+..++..+ ...+. ...+..|-.+|++.....|-.|+++|..|+...|+ +-..+.
T Consensus 267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~-kv~vcN-- 342 (898)
T COG5240 267 PFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQ-KVSVCN-- 342 (898)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCc-eeeecC--
Confidence 55667777778899999999999988762 22222 23567788899999999999999999999984332 222211
Q ss_pred ChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhc
Q 048113 82 IVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS 161 (339)
Q Consensus 82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs 161 (339)
+-+-.++.+.+..+-..|..+|..--..+.. .. .+..+..++.. -+...+.-++.++..||
T Consensus 343 --~evEsLIsd~Nr~IstyAITtLLKTGt~e~i-dr-----Lv~~I~sfvhD-----------~SD~FKiI~ida~rsLs 403 (898)
T COG5240 343 --KEVESLISDENRTISTYAITTLLKTGTEETI-DR-----LVNLIPSFVHD-----------MSDGFKIIAIDALRSLS 403 (898)
T ss_pred --hhHHHHhhcccccchHHHHHHHHHcCchhhH-HH-----HHHHHHHHHHh-----------hccCceEEeHHHHHHHH
Confidence 2233344444545555555555432221111 10 12222223322 22233333444444444
Q ss_pred C-CCCChH--------HHHhcCc-------HHHHHHHhhccccCchHHHHHHHHHHHhhcCC--HhhhHHHHh---hC--
Q 048113 162 T-CHQLIS--------PIVSSGV-------TYCLLQLIHSSEKSSGLTEKAIALLENIVSSS--EDALQEIAA---TC-- 218 (339)
Q Consensus 162 ~-~~~~~~--------~i~~~g~-------i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~--~~~~~~i~~---~~-- 218 (339)
. .+.-+. .+.+.|+ ++.+.+++.. .++.++.|+..||..+-.+ ++....+.. ++
T Consensus 404 l~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~---~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP 480 (898)
T COG5240 404 LLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEN---DPDSKERALEVLCTFIEDCEYHQITVRILGILGREGP 480 (898)
T ss_pred hhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhh---CchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCC
Confidence 3 222111 1222332 3445555544 2455666666666221111 111111110 01
Q ss_pred ------CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhcc
Q 048113 219 ------GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDC 292 (339)
Q Consensus 219 ------g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 292 (339)
.++..+..-+--.+.-++..|+.||..++-.-.. ......+...|.+.+.+.++.++.+|.-.|+++...
T Consensus 481 ~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d----~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~ 556 (898)
T COG5240 481 RAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISD----VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLS 556 (898)
T ss_pred CCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc----cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhh
Confidence 1223333222223456778888898777654322 122223455667778899999999999999999765
Q ss_pred CCC
Q 048113 293 SSF 295 (339)
Q Consensus 293 ~~~ 295 (339)
..+
T Consensus 557 da~ 559 (898)
T COG5240 557 DAC 559 (898)
T ss_pred hhh
Confidence 443
No 86
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.0026 Score=61.60 Aligned_cols=240 Identities=17% Similarity=0.140 Sum_probs=146.0
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhc-CccchHHHH
Q 048113 41 IAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSS-CLENKLEIA 119 (339)
Q Consensus 41 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~ 119 (339)
-+.++.+|++..|-+|..|.-.|..+....|+.- .-.+|.|+.-|..+++.++..|+..++.|+. ++.+.-
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL--- 217 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL--- 217 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc---
Confidence 3455667777777777777777776665433321 1245777777888888888888888888875 333321
Q ss_pred hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHH
Q 048113 120 SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIA 198 (339)
Q Consensus 120 ~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~ 198 (339)
..-|.+.+++... .+-=+....+..+.+|+- .|...+. .+++|..++.++. -..+.-.|+.
T Consensus 218 --~LAP~ffkllttS----------sNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~-AmSLlYECvN 279 (877)
T KOG1059|consen 218 --QLAPLFYKLLVTS----------SNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTV-AMSLLYECVN 279 (877)
T ss_pred --cccHHHHHHHhcc----------CCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhH-HHHHHHHHHH
Confidence 1356666766553 333355556666777765 3443333 4677888887753 2344444443
Q ss_pred HHH--HhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCH
Q 048113 199 LLE--NIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTW 276 (339)
Q Consensus 199 ~L~--n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~ 276 (339)
++- |..+..+++-..+. =+++.|-.++.+.++..+..++-++..+....+.. +.. .-..+++.+.+.++
T Consensus 280 TVVa~s~s~g~~d~~asiq---LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~----Vqa--~kdlIlrcL~DkD~ 350 (877)
T KOG1059|consen 280 TVVAVSMSSGMSDHSASIQ---LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA----VQA--HKDLILRCLDDKDE 350 (877)
T ss_pred HheeehhccCCCCcHHHHH---HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH----HHH--hHHHHHHHhccCCc
Confidence 322 11122222222222 26788888888889999999999999988664331 111 23456677889999
Q ss_pred HHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH-hcCcccch
Q 048113 277 RAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID-AEGDTVAG 323 (339)
Q Consensus 277 ~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~ 323 (339)
.+|.+|..+|.-+.+-.+ - .+++..+|..+. .+|+..+.
T Consensus 351 SIRlrALdLl~gmVskkN----l----~eIVk~LM~~~~~ae~t~yrd 390 (877)
T KOG1059|consen 351 SIRLRALDLLYGMVSKKN----L----MEIVKTLMKHVEKAEGTNYRD 390 (877)
T ss_pred hhHHHHHHHHHHHhhhhh----H----HHHHHHHHHHHHhccchhHHH
Confidence 999999999987765432 1 345555555554 45644443
No 87
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=3.2e-05 Score=71.99 Aligned_cols=267 Identities=13% Similarity=0.142 Sum_probs=171.5
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcch-hhHH
Q 048113 2 EEMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERN-KIRI 77 (339)
Q Consensus 2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~-~~~i 77 (339)
-|.|++.|..++-.+.-.+...++|+.-. -+..|.+.|.|..|++++.+.|..+|.+..|.|+++-.++..+ +-.+
T Consensus 433 ~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~ 512 (743)
T COG5369 433 VELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKF 512 (743)
T ss_pred HHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhh
Confidence 46788888776666666788888887654 8889999999999999999999999999999999999965554 4567
Q ss_pred hhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc----chHHHHhcc----hHHHHHHHhcCCCCCCCCccCCCCHHH
Q 048113 78 VKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE----NKLEIASSG----AIQRLVEILNGDLADDDNSYGRISVQA 149 (339)
Q Consensus 78 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~----~~~~i~~~g----~i~~Lv~ll~~~~~~~~~~~~~~~~~~ 149 (339)
...-++..++.+.+.+.-.+++.....|.|+.++.. .+....+.. ..+.|++.+.. .++-.
T Consensus 513 Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~-----------~np~~ 581 (743)
T COG5369 513 LAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEE-----------NNPME 581 (743)
T ss_pred HHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHh-----------cCchh
Confidence 777889999999999999999999999999987332 233222222 45566666666 67767
Q ss_pred HHHHHHHHHhhcCCCCChHHHHh-c-CcHHHHHHHhhcccc---------CchHHHHHHHHHHHhhcCCHhhhHHHHhhC
Q 048113 150 KIDAIATLHNLSTCHQLISPIVS-S-GVTYCLLQLIHSSEK---------SSGLTEKAIALLENIVSSSEDALQEIAATC 218 (339)
Q Consensus 150 ~~~a~~~L~nLs~~~~~~~~i~~-~-g~i~~Lv~ll~~~~~---------~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~ 218 (339)
....+..|.+++..+++.+.++. . ..+..+...|..... ++.+...-..+.- ++..+ +
T Consensus 582 i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v-~l~e~----------~ 650 (743)
T COG5369 582 ILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIV-NLSEN----------S 650 (743)
T ss_pred hhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeee-ccccc----------c
Confidence 77778888888887766655543 3 555555555532110 0111111111111 11111 1
Q ss_pred CcHHHHHH------Hhhc----CChHHHHHHHHHHHHhhcc---Cc----hhHH-HHHHhcCChHHHHHhhhcCCHHHHH
Q 048113 219 GAIRALVE------TIEE----GSPQCKEHAVAILLLICKS---CR----DKYR-SSILKEGVMPGLLQLSVDGTWRAKN 280 (339)
Q Consensus 219 g~i~~Lv~------lL~~----~~~~~~~~a~~~L~~l~~~---~~----~~~~-~~~~~~g~i~~L~~ll~~~~~~~~~ 280 (339)
|....++. ..+. ++.+..-...|.+.|+.-. .. ..-| +.+.+.|.-..|+++..+.++.+++
T Consensus 651 d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vre 730 (743)
T COG5369 651 DKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVRE 730 (743)
T ss_pred cccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHH
Confidence 22222221 1121 2233444455555554211 00 0112 2345567777888888888999999
Q ss_pred HHHHHHHHHh
Q 048113 281 MARDLLLLLR 290 (339)
Q Consensus 281 ~A~~~L~~l~ 290 (339)
++-.+|.++.
T Consensus 731 k~~taL~~l~ 740 (743)
T COG5369 731 KIGTALENLR 740 (743)
T ss_pred HHHHHHHhhh
Confidence 9999998874
No 88
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.83 E-value=0.0007 Score=59.44 Aligned_cols=243 Identities=12% Similarity=0.070 Sum_probs=157.1
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHH-hcCChHHHHHHhccC--CHHHHHHHHHHHHHhccCCcchhhH
Q 048113 2 EEMLMDNLLNGERETQIQAANELGKLSRR--QKHKLV-ERGIIAPLISMLCSQ--DYEAIEAALLSLLSLACGSERNKIR 76 (339)
Q Consensus 2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~-~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~~~~~~ 76 (339)
+|+|-.++++-++-.+.-|++++.++... .|+.+- +...-..+++.++.. +.++|.+++-++..|+. ++...+.
T Consensus 151 leyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqd 229 (432)
T COG5231 151 LEYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQD 229 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHH
Confidence 45666666777888899999999999876 665544 455777888888764 67999999999999999 5666544
Q ss_pred Hhhc-CChHHHHHhhcCCC-hhHHHHHHHHHHHHhcCcc--chHHHHhcchHHHHHHHhcC-CCCCCCCc----------
Q 048113 77 IVKS-GIVPVLLEVLQCQS-TTLIELTVAAMLILSSCLE--NKLEIASSGAIQRLVEILNG-DLADDDNS---------- 141 (339)
Q Consensus 77 i~~~-g~i~~Lv~lL~~~~-~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~---------- 141 (339)
+-+- +.+.-|+.+..... ..+...++.++.|+..-.+ .-....-.|-+.+-+++|.. +-+|++..
T Consensus 230 i~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l 309 (432)
T COG5231 230 IDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRL 309 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 4433 56777788777654 3477788899999887222 11112223335556665543 32111100
Q ss_pred -cCCCCHHHH-HHHHHHHH-hhcCCC---------CChHHHHhc--CcHHHHHHHhhccccCchHHHHHHHHHHHhhcCC
Q 048113 142 -YGRISVQAK-IDAIATLH-NLSTCH---------QLISPIVSS--GVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSS 207 (339)
Q Consensus 142 -~~~~~~~~~-~~a~~~L~-nLs~~~---------~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~ 207 (339)
.++..-... ..-...-. -|+-+| .|.+.+.+. .++..|.+++++..++.-+..+|-.+.+ .+...
T Consensus 310 ~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~-~Vr~~ 388 (432)
T COG5231 310 VQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQ-LVRAS 388 (432)
T ss_pred HhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHH-HHHhC
Confidence 000000000 00000000 111111 234444443 5788999999987655455666666666 77888
Q ss_pred HhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhh
Q 048113 208 EDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLIC 247 (339)
Q Consensus 208 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 247 (339)
|+.+..+.. .|+-+.+.+++.+++++++-.|+.++..+.
T Consensus 389 PE~~~vl~K-yg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 389 PEINAVLSK-YGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred chHHHHHHH-hhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 999988887 899999999999999999999999987654
No 89
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.003 Score=61.49 Aligned_cols=295 Identities=16% Similarity=0.127 Sum_probs=178.2
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh-hcC
Q 048113 6 MDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV-KSG 81 (339)
Q Consensus 6 v~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~-~~g 81 (339)
-..++++||..|..|+.++..+..+ .+..-.-.+++|.++.++.+++..++..++|+++.++.+.++.+-.-. ..+
T Consensus 370 ee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~ 449 (859)
T KOG1241|consen 370 EENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQS 449 (859)
T ss_pred HHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhH
Confidence 3478899999999999999999887 444445688999999999988888999999999999997664332222 124
Q ss_pred ChHHHHHhhcCCChhHHHHHHHHHHHHhc--CccchHH----HHh---cchHHHHHHHhcCCCCCCCCccCCCCHHHHHH
Q 048113 82 IVPVLLEVLQCQSTTLIELTVAAMLILSS--CLENKLE----IAS---SGAIQRLVEILNGDLADDDNSYGRISVQAKID 152 (339)
Q Consensus 82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~--~~~~~~~----i~~---~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~ 152 (339)
.++.++.-|.+ .|.+-.+++|++.+|+. .+..... ... ...|..|++.-...+. .....|..
T Consensus 450 ~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dg--------nqsNLR~A 520 (859)
T KOG1241|consen 450 KLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADG--------NQSNLRSA 520 (859)
T ss_pred HHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhcccccc--------chhhHHHH
Confidence 45555554433 47888999999999983 1111111 212 1234444444333110 34568899
Q ss_pred HHHHHHhhcC-CCCChHHHHhcCcHHH----HHHHhhc----cc---cCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCc
Q 048113 153 AIATLHNLST-CHQLISPIVSSGVTYC----LLQLIHS----SE---KSSGLTEKAIALLENIVSSSEDALQEIAATCGA 220 (339)
Q Consensus 153 a~~~L~nLs~-~~~~~~~i~~~g~i~~----Lv~ll~~----~~---~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~ 220 (339)
|..+|..+.. .++....++.. .... |-+.+++ .. +..+++..-+.+|...+...+..+..+.+ ..
T Consensus 521 AYeALmElIk~st~~vy~~v~~-~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d--~i 597 (859)
T KOG1241|consen 521 AYEALMELIKNSTDDVYPMVQK-LTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD--QI 597 (859)
T ss_pred HHHHHHHHHHcCcHHHHHHHHH-HHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH--HH
Confidence 9999999987 45555444322 2222 2222321 00 01233444455555333444444445543 46
Q ss_pred HHHHHHHhhc-CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhh-hcCCHHHHHHHHHHHHHHhccCCCcch
Q 048113 221 IRALVETIEE-GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLS-VDGTWRAKNMARDLLLLLRDCSSFGSR 298 (339)
Q Consensus 221 i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~A~~~L~~l~~~~~~~~~ 298 (339)
...+++++++ ++.-+.+.|..++..++..-+..+-+.+ ....|.|..=+ +..+..+-..|+++..-|++.=+. .
T Consensus 598 M~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym--~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~--~ 673 (859)
T KOG1241|consen 598 MGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM--PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALED--D 673 (859)
T ss_pred HHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh--h
Confidence 6777888887 5566778787777777654322222222 23566666555 344566667778887777653211 2
Q ss_pred hhhhhhHHHHHHHHHHHh
Q 048113 299 SKQLKNELVEQIMQEIDA 316 (339)
Q Consensus 299 ~~~~~~~~~~~i~~~~~~ 316 (339)
..-..++.+..+++.+..
T Consensus 674 i~py~d~~mt~Lvq~Lss 691 (859)
T KOG1241|consen 674 ILPYCDELMTVLVQCLSS 691 (859)
T ss_pred hhhHHHHHHHHHHHHccC
Confidence 223457777777777753
No 90
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.79 E-value=0.0046 Score=58.95 Aligned_cols=254 Identities=17% Similarity=0.193 Sum_probs=162.5
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHH-----HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchh-hHHh
Q 048113 5 LMDNLLNGERETQIQAANELGKLSRR-----QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNK-IRIV 78 (339)
Q Consensus 5 Lv~~L~s~~~~~~~~a~~~L~~l~~~-----~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~-~~i~ 78 (339)
...+|++..+.+|..|+.....++.- --+.+...|.| |.+-|..+.+++.-.-+.+++.+..- ...+ ..=-
T Consensus 609 iL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv-~~~~~mqpP 685 (975)
T COG5181 609 ILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSV-HRFRSMQPP 685 (975)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhh-hcccccCCc
Confidence 45678899999999999999998875 23455567776 77888888999888777777776652 2222 1112
Q ss_pred hcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHh-cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113 79 KSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIAS-SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL 157 (339)
Q Consensus 79 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L 157 (339)
-.|.+|.|..+|.+....++.+....+..++...+...-..+ ...-=.|+++|++ .+.+++.+|..++
T Consensus 686 i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks-----------~nKeiRR~A~~tf 754 (975)
T COG5181 686 ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKS-----------WNKEIRRNATETF 754 (975)
T ss_pred hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHH-----------hhHHHHHhhhhhh
Confidence 358999999999999989999998888888864443211111 1122357788888 7889999999999
Q ss_pred HhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhh---cCChH
Q 048113 158 HNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIE---EGSPQ 234 (339)
Q Consensus 158 ~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~---~~~~~ 234 (339)
..++..-. -.+++..|++-|+. .+-+...+.+++ . ..+.+..|-+..|-.++. .++..
T Consensus 755 G~Is~aiG------PqdvL~~LlnnLkv----qeRq~Rvctsva-I--------~iVae~cgpfsVlP~lm~dY~TPe~n 815 (975)
T COG5181 755 GCISRAIG------PQDVLDILLNNLKV----QERQQRVCTSVA-I--------SIVAEYCGPFSVLPTLMSDYETPEAN 815 (975)
T ss_pred hhHHhhcC------HHHHHHHHHhcchH----HHHHhhhhhhhh-h--------hhhHhhcCchhhHHHHHhcccCchhH
Confidence 88765211 11223333333332 333444444443 1 122233454444444554 35566
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccC
Q 048113 235 CKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCS 293 (339)
Q Consensus 235 ~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 293 (339)
+|.-.+.+++.+...-+...+..+ .-..|.|-.-+.+.++.-+..|...+++|+-++
T Consensus 816 VQnGvLkam~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 816 VQNGVLKAMCFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 777667776666544222122222 235666667788889999999999999998764
No 91
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.78 E-value=5.5e-05 Score=45.98 Aligned_cols=40 Identities=28% Similarity=0.435 Sum_probs=36.8
Q ss_pred cchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 048113 71 ERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSS 110 (339)
Q Consensus 71 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~ 110 (339)
++++..+.+.|+++.|++++.+++++++..++++|.|++.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4588899999999999999999899999999999999873
No 92
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.0034 Score=61.50 Aligned_cols=222 Identities=15% Similarity=0.160 Sum_probs=126.5
Q ss_pred hccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHH
Q 048113 48 LCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRL 127 (339)
Q Consensus 48 L~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L 127 (339)
|++++.-++-.|+.+|++++. .+-.| +..|-+.+++++.++-++..|+-+...+-.-.+....+ +++..
T Consensus 116 L~s~nq~vVglAL~alg~i~s-~Emar------dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~----f~~~~ 184 (866)
T KOG1062|consen 116 LNSSNQYVVGLALCALGNICS-PEMAR------DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH----FVIAF 184 (866)
T ss_pred ccCCCeeehHHHHHHhhccCC-HHHhH------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH----hhHHH
Confidence 445577788889999999998 23323 34577888999999999999999998887655554433 46666
Q ss_pred HHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhc----c---------ccCchHH
Q 048113 128 VEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHS----S---------EKSSGLT 193 (339)
Q Consensus 128 v~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~----~---------~~~~~~~ 193 (339)
.++|.+ .+..+...++..+..+|. +++....+.+ .++.||..|++ + -.++=++
T Consensus 185 ~~lL~e-----------k~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQ 251 (866)
T KOG1062|consen 185 RKLLCE-----------KHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQ 251 (866)
T ss_pred HHHHhh-----------cCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHH
Confidence 677766 566677777777777766 4555444444 45555555543 0 0123345
Q ss_pred HHHHHHHHHhhcCCHhhhHHHHhh--------------CC--cHHHHHH-Hhh-cCChHHHHHHHHHHHHhhccCchhHH
Q 048113 194 EKAIALLENIVSSSEDALQEIAAT--------------CG--AIRALVE-TIE-EGSPQCKEHAVAILLLICKSCRDKYR 255 (339)
Q Consensus 194 ~~a~~~L~n~l~~~~~~~~~i~~~--------------~g--~i~~Lv~-lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~ 255 (339)
...+..|. .+-.++........+ .| .+-..|. ++. .+++..+..|+.+|..+-.+.....|
T Consensus 252 i~iLrlLr-iLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~Nir 330 (866)
T KOG1062|consen 252 IRILRLLR-ILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIR 330 (866)
T ss_pred HHHHHHHH-HhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCcccee
Confidence 55555555 443332222111110 00 0111111 111 13455666677777666543322111
Q ss_pred HHHHh---------c----CChHHHHHhhhcCCHHHHHHHHHHHHHHhccCC
Q 048113 256 SSILK---------E----GVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSS 294 (339)
Q Consensus 256 ~~~~~---------~----g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 294 (339)
..-++ . .-=..+++-+++.++.+|++|..++..|.+.++
T Consensus 331 YvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N 382 (866)
T KOG1062|consen 331 YVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESN 382 (866)
T ss_pred eeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc
Confidence 11000 0 012345566777888888888888888877664
No 93
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.77 E-value=0.0013 Score=63.72 Aligned_cols=251 Identities=16% Similarity=0.187 Sum_probs=161.9
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHH-----HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhc
Q 048113 6 MDNLLNGERETQIQAANELGKLSRR-----QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKS 80 (339)
Q Consensus 6 v~~L~s~~~~~~~~a~~~L~~l~~~-----~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~ 80 (339)
..+|++.++.+|..|+..++.++.- --+.+...|+| |.+.|....+++.-.-+.+++.+..--.-.+..=--.
T Consensus 805 L~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~ 882 (1172)
T KOG0213|consen 805 LWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIK 882 (1172)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChh
Confidence 4577899999999999999999875 22355567877 7789999999988777777666655211112111235
Q ss_pred CChHHHHHhhcCCChhHHHHHHHHHHHHhcCccc----hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHH
Q 048113 81 GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN----KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIAT 156 (339)
Q Consensus 81 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~----~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~ 156 (339)
|.+|.|..+|.+....+++++...+..++...+. |+-+ ..-=.|+.+|+. .+..++.+|..+
T Consensus 883 dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLka-----------hkK~iRRaa~nT 948 (1172)
T KOG0213|consen 883 DLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKA-----------HKKEIRRAAVNT 948 (1172)
T ss_pred hhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHH-----------HHHHHHHHHHhh
Confidence 8899999999999999999999999999864432 2211 122357778877 688899999999
Q ss_pred HHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCc---HHHHHHHhhcCCh
Q 048113 157 LHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGA---IRALVETIEEGSP 233 (339)
Q Consensus 157 L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~---i~~Lv~lL~~~~~ 233 (339)
+..++..- |=-+.|..+|.+- +..+-+...+.+++ . + .+.++.|- +|.|..--..++-
T Consensus 949 fG~IakaI---------GPqdVLatLlnnL-kvqeRq~RvcTtva-I-a-------IVaE~c~pFtVLPalmneYrtPe~ 1009 (1172)
T KOG0213|consen 949 FGYIAKAI---------GPQDVLATLLNNL-KVQERQNRVCTTVA-I-A-------IVAETCGPFTVLPALMNEYRTPEA 1009 (1172)
T ss_pred hhHHHHhc---------CHHHHHHHHHhcc-hHHHHHhchhhhhh-h-h-------hhhhhcCchhhhHHHHhhccCchh
Confidence 98876521 2223344444331 12333444444444 1 1 22233444 4444443344666
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccC
Q 048113 234 QCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCS 293 (339)
Q Consensus 234 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 293 (339)
.+|.-.+.+|+.+...-++-.+..+. -+.|.|-.-+.+.++.-+..|+.++++++-+.
T Consensus 1010 nVQnGVLkalsf~FeyigemskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1010 NVQNGVLKALSFMFEYIGEMSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred HHHHhHHHHHHHHHHHHHHHhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 77887777776665442222222222 36677777788888888999999999998763
No 94
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.76 E-value=0.0004 Score=59.89 Aligned_cols=187 Identities=18% Similarity=0.172 Sum_probs=113.4
Q ss_pred ccCCHHHHHHHHHHHHHhccCC--cchhhHHhhc--CChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchH
Q 048113 49 CSQDYEAIEAALLSLLSLACGS--ERNKIRIVKS--GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAI 124 (339)
Q Consensus 49 ~~~~~~~~~~A~~~L~~Ls~~~--~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i 124 (339)
.+.+.+.+..|+..|..+..++ ......+.+. ..++.+...+.+....+...|+.++..++..-.....-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 5568899999999999999865 2333444332 56677777777766778899999999988644332222234578
Q ss_pred HHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhh
Q 048113 125 QRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIV 204 (339)
Q Consensus 125 ~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l 204 (339)
|.|++.+.+ .+..++..|..+|..++..-.....+ .++.+...+.+ +++.++..++..+...+
T Consensus 97 ~~Ll~~~~~-----------~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~--Kn~~vR~~~~~~l~~~l 159 (228)
T PF12348_consen 97 PPLLKKLGD-----------SKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKS--KNPQVREECAEWLAIIL 159 (228)
T ss_dssp HHHHHGGG--------------HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT---S-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcc-----------ccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhC--CCHHHHHHHHHHHHHHH
Confidence 999999988 68889999999999997754311111 13444555555 36888999998888555
Q ss_pred cCCHhhhHHHHh---hCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCch
Q 048113 205 SSSEDALQEIAA---TCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRD 252 (339)
Q Consensus 205 ~~~~~~~~~i~~---~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~ 252 (339)
...+.....+.. -...++.+...+.++++.+++.|-.+++.+....+.
T Consensus 160 ~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 160 EKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp TT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 555511111111 024678888899999999999999999998765444
No 95
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.016 Score=53.31 Aligned_cols=226 Identities=15% Similarity=0.109 Sum_probs=160.7
Q ss_pred HHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc------cch----HHHHhcchHHH
Q 048113 57 EAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL------ENK----LEIASSGAIQR 126 (339)
Q Consensus 57 ~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~------~~~----~~i~~~g~i~~ 126 (339)
...++-+..+|. -|+-...+++.++++.|+.+|.+.+.++....+..|-.|...+ +.. ..+++.+.++.
T Consensus 102 hd~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL 180 (536)
T KOG2734|consen 102 HDIIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL 180 (536)
T ss_pred HHHHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence 346777888999 6888889999999999999999999999999999999887522 111 23457888999
Q ss_pred HHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhc
Q 048113 127 LVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVS 205 (339)
Q Consensus 127 Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~ 205 (339)
|++-+..-+. ...+..+...+++..+-|+.. .+..+..+++.|.+.-|+.-+.....-+.-...|..+|+ .+-
T Consensus 181 LvqnveRLdE-----svkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLa-ill 254 (536)
T KOG2734|consen 181 LVQNVERLDE-----SVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILA-ILL 254 (536)
T ss_pred HHHHHHHhhh-----cchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHH-HHh
Confidence 9887754100 000223455678888889876 678888999999888888766543334566788888888 554
Q ss_pred C-CHhhhHHHHhhCCcHHHHHHHhhc----C-----ChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCC
Q 048113 206 S-SEDALQEIAATCGAIRALVETIEE----G-----SPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGT 275 (339)
Q Consensus 206 ~-~~~~~~~i~~~~g~i~~Lv~lL~~----~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 275 (339)
. ..+++..... -+++..+++-+.- + ..+..++-..+|+.+-.. +++|+.+..+.+++...=+++. .
T Consensus 255 q~s~e~~~~~~~-l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~--~~nr~~Fl~~EGlqLm~Lmlr~-K 330 (536)
T KOG2734|consen 255 QNSDENRKLLGP-LDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA--PANRERFLKGEGLQLMNLMLRE-K 330 (536)
T ss_pred ccCchhhhhhcC-cccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC--hhhhhhhhccccHHHHHHHHHH-H
Confidence 4 4557777765 7889998887631 1 245667777788777665 3578999987777765544554 5
Q ss_pred HHHHHHHHHHHHHHhccC
Q 048113 276 WRAKNMARDLLLLLRDCS 293 (339)
Q Consensus 276 ~~~~~~A~~~L~~l~~~~ 293 (339)
...+..|...|.....+.
T Consensus 331 k~sr~SalkvLd~am~g~ 348 (536)
T KOG2734|consen 331 KVSRGSALKVLDHAMFGP 348 (536)
T ss_pred HHhhhhHHHHHHHHHhCC
Confidence 556677788887765543
No 96
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.70 E-value=0.0032 Score=57.65 Aligned_cols=188 Identities=20% Similarity=0.197 Sum_probs=133.7
Q ss_pred CChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHH
Q 048113 39 GIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEI 118 (339)
Q Consensus 39 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i 118 (339)
..++.+..++.+.+..++..|+..++.+.. .-++|.+..++.+.++.++..|+.+|..+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~---------- 101 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGEL---------- 101 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHcc----------
Confidence 578888999999999999999888655544 23689999999999999999998866443
Q ss_pred HhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhcccc----------
Q 048113 119 ASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEK---------- 188 (339)
Q Consensus 119 ~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~---------- 188 (339)
.....++.|+.++.++ .+..++..+..+|..+-... .+..++..+++...
T Consensus 102 ~~~~a~~~li~~l~~d----------~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~ 161 (335)
T COG1413 102 GDPEAVPPLVELLEND----------ENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAA 161 (335)
T ss_pred CChhHHHHHHHHHHcC----------CcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccch
Confidence 2344789999999853 78999999999999873322 27777777776420
Q ss_pred CchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHH
Q 048113 189 SSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLL 268 (339)
Q Consensus 189 ~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~ 268 (339)
....+..+...|. .+. +...++.+..++.+.+..++..|+.+|..+.... ..+.+.+.
T Consensus 162 ~~~~r~~a~~~l~-----------~~~-~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~ 219 (335)
T COG1413 162 LLDVRAAAAEALG-----------ELG-DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----------VEAADLLV 219 (335)
T ss_pred HHHHHHHHHHHHH-----------HcC-ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------hhHHHHHH
Confidence 0123334444444 122 2567899999999988899999999998887552 12445566
Q ss_pred HhhhcCCHHHHHHHHHHHHHH
Q 048113 269 QLSVDGTWRAKNMARDLLLLL 289 (339)
Q Consensus 269 ~ll~~~~~~~~~~A~~~L~~l 289 (339)
+.+.+.+..++..++..|..+
T Consensus 220 ~~~~~~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 220 KALSDESLEVRKAALLALGEI 240 (335)
T ss_pred HHhcCCCHHHHHHHHHHhccc
Confidence 666666666666666655444
No 97
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.024 Score=55.75 Aligned_cols=304 Identities=14% Similarity=0.131 Sum_probs=165.4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113 5 LMDNLLNGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI 82 (339)
Q Consensus 5 Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~ 82 (339)
|..=|++++..+..-|+.+|++++.. .| +..|.+-+++++.++.+|..|+.+...+-...|+.-+.+
T Consensus 112 lknDL~s~nq~vVglAL~alg~i~s~Emar------dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f----- 180 (866)
T KOG1062|consen 112 LKNDLNSSNQYVVGLALCALGNICSPEMAR------DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF----- 180 (866)
T ss_pred HHhhccCCCeeehHHHHHHhhccCCHHHhH------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----
Confidence 34456788888889999999988764 33 345667788899999999999999888877555443333
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHHhcC-ccchHHHHhcchHHHHHHHhcCC-----CCCCCCc---------------
Q 048113 83 VPVLLEVLQCQSTTLIELTVAAMLILSSC-LENKLEIASSGAIQRLVEILNGD-----LADDDNS--------------- 141 (339)
Q Consensus 83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~-----~~~~~~~--------------- 141 (339)
++....+|.+.+..+...++..+..++.. ++.-..+.+ .++.|+..|++- +.+.+..
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlL 258 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLL 258 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHH
Confidence 33445555555555555555555555532 222222222 444444444431 1111100
Q ss_pred --cCCCCHHHHHHHHHHHHhhcCCCCChHHHHhc---CcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHh
Q 048113 142 --YGRISVQAKIDAIATLHNLSTCHQLISPIVSS---GVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAA 216 (339)
Q Consensus 142 --~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~---g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~ 216 (339)
+++++.+....-...|..++.+.+.-+-+..+ .+|..+..+- +...+++.|+.+|+..+...+.|.+.+.-
T Consensus 259 riLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~----~~~~LrvlainiLgkFL~n~d~NirYvaL 334 (866)
T KOG1062|consen 259 RILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR----SNSGLRVLAINILGKFLLNRDNNIRYVAL 334 (866)
T ss_pred HHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc----CCchHHHHHHHHHHHHhcCCccceeeeeh
Confidence 12244444444444555554422111111111 1122222221 24577777777777544444433322210
Q ss_pred ---------hCCcH----HHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHH
Q 048113 217 ---------TCGAI----RALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMAR 283 (339)
Q Consensus 217 ---------~~g~i----~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~ 283 (339)
+..++ ..+++-|++++..++..|...+..|...+ + .+. .+..|+..+...++..+..-+
T Consensus 335 n~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~-N-v~~------mv~eLl~fL~~~d~~~k~~~a 406 (866)
T KOG1062|consen 335 NMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES-N-VRV------MVKELLEFLESSDEDFKADIA 406 (866)
T ss_pred hhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc-c-HHH------HHHHHHHHHHhccHHHHHHHH
Confidence 01111 45677888889999999999988887553 2 343 356688888887888775544
Q ss_pred HHHHHHhc-cCCCcc------------hhhhhhhHHHHHHHHHHHhc-CcccchHHHHHHHHHH
Q 048113 284 DLLLLLRD-CSSFGS------------RSKQLKNELVEQIMQEIDAE-GDTVAGTTLRLVEEMI 333 (339)
Q Consensus 284 ~~L~~l~~-~~~~~~------------~~~~~~~~~~~~i~~~~~~~-~~~~~~~a~~~l~~~v 333 (339)
.-+..++. +++..+ -++.+..+++..+++.+... ++.-.+.-+|+...+.
T Consensus 407 s~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~ 470 (866)
T KOG1062|consen 407 SKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALS 470 (866)
T ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHh
Confidence 44433332 222100 12335578888888888533 3333445555555544
No 98
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.014 Score=56.68 Aligned_cols=265 Identities=15% Similarity=0.099 Sum_probs=151.9
Q ss_pred HcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccC--CHHHHHHHHHHHHHhccCCcchhhHHhhcCChHH
Q 048113 9 LLNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQ--DYEAIEAALLSLLSLACGSERNKIRIVKSGIVPV 85 (339)
Q Consensus 9 L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~ 85 (339)
|.|.|+.-.+-|+.+++|+-.- .+..+.. -|+ ++|-++ .+-++..|+-+|..|-+.+|+ .+-..+-...
T Consensus 120 L~srn~~fv~LAL~~I~niG~re~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~r 191 (938)
T KOG1077|consen 120 LSSRNPTFVCLALHCIANIGSREMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQR 191 (938)
T ss_pred hhcCCcHHHHHHHHHHHhhccHhHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHH
Confidence 4567777788888888877653 4443322 122 555444 445777787777777774443 2223355788
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhcCcc--chHHHHhcchHHHHHHHhcCCCCC-CCCc-cCCCCHHHHHHHHHHHHhhc
Q 048113 86 LLEVLQCQSTTLIELTVAAMLILSSCLE--NKLEIASSGAIQRLVEILNGDLAD-DDNS-YGRISVQAKIDAIATLHNLS 161 (339)
Q Consensus 86 Lv~lL~~~~~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~-~~~~-~~~~~~~~~~~a~~~L~nLs 161 (339)
++.+|+..+..+...+...+--|+...+ .+..+ .-++..|..+......+ .|-. +.-..|=.....+++|.+.-
T Consensus 192 iv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~--~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p 269 (938)
T KOG1077|consen 192 IVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCL--PLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYP 269 (938)
T ss_pred HHHHhCccccceeeehHHHHHHHHHcCCHHHhhhH--HHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCC
Confidence 9999998887777777777777775332 23322 22333443333331110 0111 12245567777888888773
Q ss_pred C--CCCChHHHHhcCcHHHHHHHhhccccCchHHH----HH-H-HHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCCh
Q 048113 162 T--CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTE----KA-I-ALLENIVSSSEDALQEIAATCGAIRALVETIEEGSP 233 (339)
Q Consensus 162 ~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~----~a-~-~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~ 233 (339)
. ++..+..+.+ +.+.++...+.+++..+++. +| + .++. +....+.....+. .++..|-++|.+.+.
T Consensus 270 ~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~-l~~h~D~e~~ll~---~~~~~Lg~fls~rE~ 343 (938)
T KOG1077|consen 270 TPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAIS-LAIHLDSEPELLS---RAVNQLGQFLSHRET 343 (938)
T ss_pred CCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHH-HHHHcCCcHHHHH---HHHHHHHHHhhcccc
Confidence 3 2333444433 45555555554332222221 12 1 2333 2222333333333 367888888888888
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhh-cCCHHHHHHHHHHHHHHhccC
Q 048113 234 QCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSV-DGTWRAKNMARDLLLLLRDCS 293 (339)
Q Consensus 234 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~ 293 (339)
.++..|+..++.|+..... ...+.. . ...++..++ ..+..++++|+.+|..+++-+
T Consensus 344 NiRYLaLEsm~~L~ss~~s--~davK~-h-~d~Ii~sLkterDvSirrravDLLY~mcD~~ 400 (938)
T KOG1077|consen 344 NIRYLALESMCKLASSEFS--IDAVKK-H-QDTIINSLKTERDVSIRRRAVDLLYAMCDVS 400 (938)
T ss_pred cchhhhHHHHHHHHhccch--HHHHHH-H-HHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence 8888898888888876322 232222 2 556666666 667888899999998887755
No 99
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.0051 Score=58.67 Aligned_cols=226 Identities=18% Similarity=0.154 Sum_probs=141.3
Q ss_pred HHHhcCChHHHHHHhc---cCCHHHHHHHHHHHHHhccCCcchhhHHhhcCCh----HHHHHhhcCCChhHHHHHHHHHH
Q 048113 34 KLVERGIIAPLISMLC---SQDYEAIEAALLSLLSLACGSERNKIRIVKSGIV----PVLLEVLQCQSTTLIELTVAAML 106 (339)
Q Consensus 34 ~i~~~g~i~~Lv~lL~---~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i----~~Lv~lL~~~~~~~~~~a~~~L~ 106 (339)
...+...++.+...+. +..+.+|+.|..+...+-... ...++ |.++.-+....-..+..++..+.
T Consensus 208 ~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~--------~~~aVK~llpsll~~l~~~kWrtK~aslellg 279 (569)
T KOG1242|consen 208 PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCL--------SAYAVKLLLPSLLGSLLEAKWRTKMASLELLG 279 (569)
T ss_pred CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhc--------CcchhhHhhhhhHHHHHHHhhhhHHHHHHHHH
Confidence 3345666666666554 346677777666655444321 12233 33333333334456778888899
Q ss_pred HHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhcc
Q 048113 107 ILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSS 186 (339)
Q Consensus 107 nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~ 186 (339)
.++...+..-...-...+|.+.+.|-+ .+++++..+..+|..++..-+|.... -.+|.|++.+.++
T Consensus 280 ~m~~~ap~qLs~~lp~iiP~lsevl~D-----------T~~evr~a~~~~l~~~~svidN~dI~---~~ip~Lld~l~dp 345 (569)
T KOG1242|consen 280 AMADCAPKQLSLCLPDLIPVLSEVLWD-----------TKPEVRKAGIETLLKFGSVIDNPDIQ---KIIPTLLDALADP 345 (569)
T ss_pred HHHHhchHHHHHHHhHhhHHHHHHHcc-----------CCHHHHHHHHHHHHHHHHhhccHHHH---HHHHHHHHHhcCc
Confidence 888777766667778899999999988 79999999999999998765555411 2467777777764
Q ss_pred ccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHh--cCCh
Q 048113 187 EKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILK--EGVM 264 (339)
Q Consensus 187 ~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~g~i 264 (339)
. .-...|+..|. -..--...-..-. +=.+|.|.+-+...+..++..++.+..|+|.--++ .+.+.. -..+
T Consensus 346 ~---~~~~e~~~~L~-~ttFV~~V~~psL--almvpiL~R~l~eRst~~kr~t~~IidNm~~LveD--p~~lapfl~~Ll 417 (569)
T KOG1242|consen 346 S---CYTPECLDSLG-ATTFVAEVDAPSL--ALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVED--PKDLAPFLPSLL 417 (569)
T ss_pred c---cchHHHHHhhc-ceeeeeeecchhH--HHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcC--HHHHhhhHHHHh
Confidence 2 23445665555 2211110000000 11244555555666788889999999999975321 122222 2356
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHH
Q 048113 265 PGLLQLSVDGTWRAKNMARDLLLLL 289 (339)
Q Consensus 265 ~~L~~ll~~~~~~~~~~A~~~L~~l 289 (339)
|.|-..+.+..|.+|.-|..+|.-+
T Consensus 418 p~lk~~~~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 418 PGLKENLDDAVPEVRAVAARALGAL 442 (569)
T ss_pred hHHHHHhcCCChhHHHHHHHHHHHH
Confidence 6666677777899999999999444
No 100
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.59 E-value=0.0029 Score=50.51 Aligned_cols=137 Identities=13% Similarity=0.194 Sum_probs=97.5
Q ss_pred HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHH
Q 048113 116 LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEK 195 (339)
Q Consensus 116 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~ 195 (339)
..+.+.+|+..|++++.+++. ..+........++.++..|-.....-=...+..+|.+++..+.....+..+...
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~-----~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~ 79 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTE-----IQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQR 79 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCc-----cCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHH
Confidence 456678899999999988420 000024677788888888866544333456667888999999876546889999
Q ss_pred HHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHH
Q 048113 196 AIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSI 258 (339)
Q Consensus 196 a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 258 (339)
|+.+|- .+..+.......+.+.=-++.|+.+|+.+++.++.++...+-.|....++.-|+.+
T Consensus 80 sLaILE-s~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i 141 (160)
T PF11841_consen 80 SLAILE-SIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI 141 (160)
T ss_pred HHHHHH-HHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 999999 45555555444444355689999999999999999999888777665555334433
No 101
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.55 E-value=0.0068 Score=61.08 Aligned_cols=221 Identities=15% Similarity=0.118 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHH-HHhccCCcchhhHHhhcCChHHHHHhhcC
Q 048113 17 QIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSL-LSLACGSERNKIRIVKSGIVPVLLEVLQC 92 (339)
Q Consensus 17 ~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L-~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~ 92 (339)
|..|+..|..+..- .-..-..-|+.|.++++|++.-.+++..-..+= ..|+. ++..+..+++.++-..+++.|..
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAv-D~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAV-DPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhc-CchhHHHHHhccCceeEEEEecC
Confidence 34455555544432 334445789999999999999888876544433 45666 67778889988888888888876
Q ss_pred -C--ChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCCh
Q 048113 93 -Q--STTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLI 167 (339)
Q Consensus 93 -~--~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~ 167 (339)
+ +++-+..|+.+|..+..+- ..+....+.+.+...+..+..+ ..+-.+...+-+|..|=. .++.+
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~----------~~pLLrQW~~icLG~LW~d~~~Ar 635 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDD----------PEPLLRQWLCICLGRLWEDYDEAR 635 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCC----------ccHHHHHHHHHHHHHHhhhcchhh
Confidence 3 4678888999999988654 4566666788888888888772 368889999999999855 45555
Q ss_pred HHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcC----CHhhhHHH---Hh-------hCCcH----HHHHHHhh
Q 048113 168 SPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSS----SEDALQEI---AA-------TCGAI----RALVETIE 229 (339)
Q Consensus 168 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~----~~~~~~~i---~~-------~~g~i----~~Lv~lL~ 229 (339)
-.=.+.++.+.|..+|.+. .++++.+|+.+|+-.+.. .++....+ .. -+..+ ..++.+++
T Consensus 636 w~G~r~~AhekL~~~LsD~--vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vs 713 (1387)
T KOG1517|consen 636 WSGRRDNAHEKLILLLSDP--VPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVS 713 (1387)
T ss_pred hccccccHHHHHHHHhcCc--cHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHh
Confidence 5556779999999999985 579999999999955543 22222222 00 01223 47788888
Q ss_pred cCChHHHHHHHHHHHHhhccC
Q 048113 230 EGSPQCKEHAVAILLLICKSC 250 (339)
Q Consensus 230 ~~~~~~~~~a~~~L~~l~~~~ 250 (339)
++++-++...+.+|..+....
T Consensus 714 dgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 714 DGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred ccchHHHHHHHHHHHHHHHhh
Confidence 899999888888888877653
No 102
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.53 E-value=0.005 Score=62.01 Aligned_cols=205 Identities=15% Similarity=0.112 Sum_probs=148.2
Q ss_pred hhcCChHHHHHhhcCCChhHHHHHHHHHHHH-hcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHH
Q 048113 78 VKSGIVPVLLEVLQCQSTTLIELTVAAMLIL-SSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIAT 156 (339)
Q Consensus 78 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nL-s~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~ 156 (339)
...|+.|..+++|+++..+++..-+.+=..+ +-++.|+..+++.++-...+++|..... -+++-+.-|+-+
T Consensus 509 LsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~--------~~~EqrtmaAFV 580 (1387)
T KOG1517|consen 509 LSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQA--------IPPEQRTMAAFV 580 (1387)
T ss_pred hccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCC--------CCHHHHHHHHHH
Confidence 3559999999999999988887665555554 5677778888888888888888866210 356788889989
Q ss_pred HHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHH
Q 048113 157 LHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQC 235 (339)
Q Consensus 157 L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~ 235 (339)
|.-++. .+.+.+...+.+.+..-+..|.++. .+-++.=++-+|+.+-...++.|-.-.+ .++.+.|..+|.++.+++
T Consensus 581 LAviv~nf~lGQ~acl~~~li~iCle~lnd~~-~pLLrQW~~icLG~LW~d~~~Arw~G~r-~~AhekL~~~LsD~vpEV 658 (1387)
T KOG1517|consen 581 LAVIVRNFKLGQKACLNGNLIGICLEHLNDDP-EPLLRQWLCICLGRLWEDYDEARWSGRR-DNAHEKLILLLSDPVPEV 658 (1387)
T ss_pred HHHHHcccchhHHHhccccHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhhhcchhhhcccc-ccHHHHHHHHhcCccHHH
Confidence 999887 4566777788888988888888752 3445555666777333556666666565 789999999999999999
Q ss_pred HHHHHHHHHHhhccC----chh--HHH--------HHHhcCChH----HHHHhhhcCCHHHHHHHHHHHHHHhcc
Q 048113 236 KEHAVAILLLICKSC----RDK--YRS--------SILKEGVMP----GLLQLSVDGTWRAKNMARDLLLLLRDC 292 (339)
Q Consensus 236 ~~~a~~~L~~l~~~~----~~~--~~~--------~~~~~g~i~----~L~~ll~~~~~~~~~~A~~~L~~l~~~ 292 (339)
+-.|+.+|..+-... ++. .++ .+.-+..++ .++.+++++++-++...+..|..+.-.
T Consensus 659 RaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g 733 (1387)
T KOG1517|consen 659 RAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVG 733 (1387)
T ss_pred HHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 999999998886531 111 111 111223333 677788899999988888888777553
No 103
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.52 E-value=0.00028 Score=42.77 Aligned_cols=38 Identities=32% Similarity=0.477 Sum_probs=35.0
Q ss_pred HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 048113 31 QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLAC 68 (339)
Q Consensus 31 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~ 68 (339)
++..+.+.|+++.|+.++++++++++..|+++|+|++.
T Consensus 4 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 4 QKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 56778899999999999999999999999999999974
No 104
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.41 E-value=0.0046 Score=60.61 Aligned_cols=246 Identities=13% Similarity=0.044 Sum_probs=161.7
Q ss_pred CcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHH-HHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHH
Q 048113 70 SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAML-ILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQ 148 (339)
Q Consensus 70 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~-nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~ 148 (339)
...-+...++.|+...|+++.....++.+..+..+|. .++. +..+ ....++++.+.+++. ....
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f-~~~~----~~~v~~~~~s~~~~d----------~~~~ 557 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF-PGER----SYEVVKPLDSALHND----------EKGL 557 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC-CCCc----hhhhhhhhcchhhhh----------HHHH
Confidence 5667888899999999999999988888888888877 2211 1111 134577777777662 2233
Q ss_pred HHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHH-HhhCCcHHHHHH
Q 048113 149 AKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEI-AATCGAIRALVE 226 (339)
Q Consensus 149 ~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i-~~~~g~i~~Lv~ 226 (339)
-...++.++.||+. ++..+..+++.-+++.+-.++... ++.++..++..+. |+..++....+. ++.....+-...
T Consensus 558 en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee--~~~lqraa~e~~~-NLl~~~~~~e~si~e~~~~l~~w~~ 634 (748)
T KOG4151|consen 558 ENFEALEALTNLASISESDRQKILKEKALGKIEELMTEE--NPALQRAALESII-NLLWSPLLYERSIVEYKDRLKLWNL 634 (748)
T ss_pred HHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcc--cHHHHHHHHHHHH-HHHhhHHHHHHHhhccccCchHHHH
Confidence 34469999999987 567777888776666666665543 5788889999999 677777665444 443455666666
Q ss_pred HhhcCChHHHHHHHHHHHHhhccCchhHHHHHH-hcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhH
Q 048113 227 TIEEGSPQCKEHAVAILLLICKSCRDKYRSSIL-KEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNE 305 (339)
Q Consensus 227 lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~ 305 (339)
.+..........+++++..++..... .+..+. .......++.++.+.++.+|.....+..++...... --.+.+..+
T Consensus 635 ~~e~~~E~~~lA~a~a~a~I~sv~~n-~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~e-i~~~~~~~~ 712 (748)
T KOG4151|consen 635 NLEVADEKFELAGAGALAAITSVVEN-HCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFE-IAEKIFETE 712 (748)
T ss_pred HHHhhhhHHhhhccccccchhhcchh-hhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHH-HHHHhccch
Confidence 66665666777777777766655433 444333 356888899999999999997777766665543321 012233444
Q ss_pred HHHHHHHHHHhcCcccchHHHHHHHHHHHH
Q 048113 306 LVEQIMQEIDAEGDTVAGTTLRLVEEMIAK 335 (339)
Q Consensus 306 ~~~~i~~~~~~~~~~~~~~a~~~l~~~v~~ 335 (339)
.+..+...-..+-.+.++.|...|..++..
T Consensus 713 ~~~~l~~~~~~~~a~~~~~~~~~l~~a~~~ 742 (748)
T KOG4151|consen 713 VMELLSGLQKLNRAPKREDAAPCLSAAEEY 742 (748)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHh
Confidence 444443333355577777788877776654
No 105
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.06 Score=52.44 Aligned_cols=297 Identities=14% Similarity=0.149 Sum_probs=174.2
Q ss_pred HHHHcCCC--HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhh-HHhhcCC
Q 048113 6 MDNLLNGE--RETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKI-RIVKSGI 82 (339)
Q Consensus 6 v~~L~s~~--~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~-~i~~~g~ 82 (339)
-++|.|++ .-++.+|+-+|-.+-+.+.+.+...+...+++.+|++.+..+...+...+-.|++.+|+... .+-. +
T Consensus 152 ~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~--a 229 (938)
T KOG1077|consen 152 PKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL--A 229 (938)
T ss_pred HHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH--H
Confidence 35666553 35678888888777777777777788999999999998888888888889889886665432 2211 1
Q ss_pred hHHHHHhhcC-------------CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHH
Q 048113 83 VPVLLEVLQC-------------QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQA 149 (339)
Q Consensus 83 i~~Lv~lL~~-------------~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~ 149 (339)
+..|.+.... +.|=++-..+++|.++-..++.-....-....+.++...+.+. .+.++
T Consensus 230 vs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~---------~~k~v 300 (938)
T KOG1077|consen 230 VSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPP---------KSKKV 300 (938)
T ss_pred HHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCc---------cccch
Confidence 2222222111 2244677777777777543332222222334555555554321 11111
Q ss_pred HH-----HHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHH
Q 048113 150 KI-----DAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRA 223 (339)
Q Consensus 150 ~~-----~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~ 223 (339)
+. ..+--.-+|+. .+.....+.. ++..|-+++.+. ...++--|+..++ .++........+-.+ ...
T Consensus 301 q~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~r--E~NiRYLaLEsm~-~L~ss~~s~davK~h---~d~ 372 (938)
T KOG1077|consen 301 QHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHR--ETNIRYLALESMC-KLASSEFSIDAVKKH---QDT 372 (938)
T ss_pred HhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcc--cccchhhhHHHHH-HHHhccchHHHHHHH---HHH
Confidence 11 11111223333 3444444444 466788888875 4788889999999 677776666665542 677
Q ss_pred HHHHhh-cCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc-----cCCCcc
Q 048113 224 LVETIE-EGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD-----CSSFGS 297 (339)
Q Consensus 224 Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~-----~~~~~~ 297 (339)
++..|+ ..+..++..|+..|..+|..+.. +.+ +.-|++.+.+-+..+|+.-+.=...|+. ..+|.-
T Consensus 373 Ii~sLkterDvSirrravDLLY~mcD~~Na---k~I-----V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVd 444 (938)
T KOG1077|consen 373 IINSLKTERDVSIRRRAVDLLYAMCDVSNA---KQI-----VAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVD 444 (938)
T ss_pred HHHHhccccchHHHHHHHHHHHHHhchhhH---HHH-----HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHH
Confidence 888888 57889999999999999976433 333 5556666666776666443322222221 122100
Q ss_pred --------hhhhhhhHHHHHHHHHHHhcCcccch-HHHHHHH
Q 048113 298 --------RSKQLKNELVEQIMQEIDAEGDTVAG-TTLRLVE 330 (339)
Q Consensus 298 --------~~~~~~~~~~~~i~~~~~~~~~~~~~-~a~~~l~ 330 (339)
-++..++++--++++.+ ++.+++.+ .|.++..
T Consensus 445 viLqLiriagd~vsdeVW~RvvQiV-vNnedlq~yaak~~fe 485 (938)
T KOG1077|consen 445 VILQLIRIAGDYVSDEVWYRVVQIV-VNNEDLQGYAAKRLFE 485 (938)
T ss_pred HHHHHHHHhcccccHHHHHHhheeE-ecchhhhHHHHHHHHH
Confidence 01234566667766666 56666644 5655543
No 106
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.39 E-value=0.0043 Score=59.18 Aligned_cols=248 Identities=15% Similarity=0.177 Sum_probs=142.2
Q ss_pred ChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchh---hHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccc--
Q 048113 40 IIAPLISMLCSQDYEAIEAALLSLLSLACGSERNK---IRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN-- 114 (339)
Q Consensus 40 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~---~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~-- 114 (339)
++...+.+|++..+.++..|+...+.|+. --.++ ..+.+.|.| |..-|....+++.-..+.+++.+.+...-
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~-vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAK-VLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHH-HHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 34556678889999999999999988886 22222 233344443 55667777888877666676666543222
Q ss_pred -hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCC---hHHHHhcCcHHHHHHHhhccccC
Q 048113 115 -KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQL---ISPIVSSGVTYCLLQLIHSSEKS 189 (339)
Q Consensus 115 -~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~---~~~i~~~g~i~~Lv~ll~~~~~~ 189 (339)
++- -.|.+|.|..+|++ .+.++..+.+..+..+|.. ++. ++++.- --.|+++|+++ .
T Consensus 682 mqpP--i~~ilP~ltPILrn-----------kh~Kv~~nti~lvg~I~~~~peyi~~rEWMRI---cfeLvd~Lks~--n 743 (975)
T COG5181 682 MQPP--ISGILPSLTPILRN-----------KHQKVVANTIALVGTICMNSPEYIGVREWMRI---CFELVDSLKSW--N 743 (975)
T ss_pred cCCc--hhhccccccHhhhh-----------hhHHHhhhHHHHHHHHHhcCcccCCHHHHHHH---HHHHHHHHHHh--h
Confidence 222 36789999999999 8999999999999999884 432 445533 23477888886 3
Q ss_pred chHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHH--HHHHhhccCchhHHHHHHhcCChHHH
Q 048113 190 SGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVA--ILLLICKSCRDKYRSSILKEGVMPGL 267 (339)
Q Consensus 190 ~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~--~L~~l~~~~~~~~~~~~~~~g~i~~L 267 (339)
.+++++|..+++ .++. .+.- .+++..|++-|+. .+.+...+. ++.-.+..+++ ..++|.|
T Consensus 744 KeiRR~A~~tfG-~Is~------aiGP-qdvL~~LlnnLkv--qeRq~RvctsvaI~iVae~cgp--------fsVlP~l 805 (975)
T COG5181 744 KEIRRNATETFG-CISR------AIGP-QDVLDILLNNLKV--QERQQRVCTSVAISIVAEYCGP--------FSVLPTL 805 (975)
T ss_pred HHHHHhhhhhhh-hHHh------hcCH-HHHHHHHHhcchH--HHHHhhhhhhhhhhhhHhhcCc--------hhhHHHH
Confidence 688999988888 3321 1111 1233333333332 222222221 11222211111 2357777
Q ss_pred HHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH---hcCccc-chHHHHHHHHH
Q 048113 268 LQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID---AEGDTV-AGTTLRLVEEM 332 (339)
Q Consensus 268 ~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~-~~~a~~~l~~~ 332 (339)
+.=-..++..+|.-.+.++..+-.. .-+++.+-+-.|...+. -|-|++ +++|..+..-+
T Consensus 806 m~dY~TPe~nVQnGvLkam~fmFey------ig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl 868 (975)
T COG5181 806 MSDYETPEANVQNGVLKAMCFMFEY------IGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHL 868 (975)
T ss_pred HhcccCchhHHHHhHHHHHHHHHHH------HHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHH
Confidence 6555666666776655555544331 11233333333333332 344555 55666655544
No 107
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.32 E-value=0.0011 Score=48.86 Aligned_cols=65 Identities=17% Similarity=0.134 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHh--ccCCHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113 17 QIQAANELGKLSRR---QKHKLVERGIIAPLISML--CSQDYEAIEAALLSLLSLACGSERNKIRIVKSG 81 (339)
Q Consensus 17 ~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL--~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g 81 (339)
+..-++.|++++.. +++.+.+.|+++.++... +..+|-+++.|+.++++|+.++++|+..+.+..
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~ 72 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLE 72 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhcc
Confidence 45667889999986 999999999999999865 445899999999999999999999999887653
No 108
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.0081 Score=58.75 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=60.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCc
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSE 71 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~ 71 (339)
+++...++++++.+|..|+-...++-....+...+.|.+..|-.++.++++.+..+|+.+|..+...++
T Consensus 124 ~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 124 DPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred HHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 577888899999999999988877766688888899999999999999999999999999999988544
No 109
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.27 E-value=0.00048 Score=44.94 Aligned_cols=55 Identities=22% Similarity=0.177 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHH
Q 048113 53 YEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLIL 108 (339)
Q Consensus 53 ~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nL 108 (339)
+.+|..|+++|++++...+. ...-....++|.|+.+|.++++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~-~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPE-LLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHH-HHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHH-HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46899999999999884333 33335668999999999999999999999999875
No 110
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.27 E-value=0.015 Score=46.56 Aligned_cols=122 Identities=11% Similarity=0.101 Sum_probs=93.4
Q ss_pred hHHHHhcCcHHHHHHHhhcccc----CchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC--ChHHHHHHH
Q 048113 167 ISPIVSSGVTYCLLQLIHSSEK----SSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEG--SPQCKEHAV 240 (339)
Q Consensus 167 ~~~i~~~g~i~~Lv~ll~~~~~----~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~ 240 (339)
...+...||+..|++++.++.. ..++...++.++.+++-..-.+. ..+. ..+|..++..+... ++.+.+.|+
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~-~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLS-DSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhcc-HHHHHHHHHHHccccccchHHHHHH
Confidence 3567788999999999988642 24677888888885444333344 4444 57899999988764 478899999
Q ss_pred HHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113 241 AILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 241 ~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 291 (339)
.+|-++...++. .-..+.++=-++.|+..++.+++.++.+|..++-.|-.
T Consensus 82 aILEs~Vl~S~~-ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 82 AILESIVLNSPK-LYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHHHHhCCHH-HHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 999999987644 45566667789999999999999999999998855543
No 111
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.031 Score=54.92 Aligned_cols=290 Identities=14% Similarity=0.117 Sum_probs=154.5
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC---Ccch-----
Q 048113 2 EEMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACG---SERN----- 73 (339)
Q Consensus 2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~---~~~~----- 73 (339)
||.+-.+|.+.++-+.-.|+.+...++-+.-+.+ ++--+.++++|.+-+..-|...+..|..-|++ .|..
T Consensus 182 ~e~I~~LLaD~splVvgsAv~AF~evCPerldLI--HknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~ 259 (968)
T KOG1060|consen 182 EEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLI--HKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSL 259 (968)
T ss_pred HHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHh--hHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCcccccccc
Confidence 4455555556666666666666655554311111 22334455555554444454454444433331 1100
Q ss_pred ----------------hhHHhhcCChHHHH----HhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcC
Q 048113 74 ----------------KIRIVKSGIVPVLL----EVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNG 133 (339)
Q Consensus 74 ----------------~~~i~~~g~i~~Lv----~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~ 133 (339)
+..++..-=+..|+ .+|.+.++.+...++.+.+.++-..+. ...+++|+++|++
T Consensus 260 e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~------~~i~kaLvrLLrs 333 (968)
T KOG1060|consen 260 EDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQV------TKIAKALVRLLRS 333 (968)
T ss_pred ccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHH------HHHHHHHHHHHhc
Confidence 00111111122333 345667788888888999888864432 2358889998877
Q ss_pred CCCCCC------------------------CccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccC
Q 048113 134 DLADDD------------------------NSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKS 189 (339)
Q Consensus 134 ~~~~~~------------------------~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 189 (339)
+..-.. +.++++...+...-+..|.+|+........ ++.+-..+.+. +
T Consensus 334 ~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~I------LrE~q~YI~s~--d 405 (968)
T KOG1060|consen 334 NREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEI------LRELQTYIKSS--D 405 (968)
T ss_pred CCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHH------HHHHHHHHhcC--c
Confidence 421110 013344444555555555555443331111 12233333433 2
Q ss_pred chHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHH
Q 048113 190 SGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQ 269 (339)
Q Consensus 190 ~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ 269 (339)
..+...++.+++ .|+.... .+. .-++.-|+.++++.+..+...++.++..|-..++.+.-+ .+..|.+
T Consensus 406 ~~faa~aV~AiG-rCA~~~~---sv~--~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~------ii~~La~ 473 (968)
T KOG1060|consen 406 RSFAAAAVKAIG-RCASRIG---SVT--DTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLE------ILFQLAR 473 (968)
T ss_pred hhHHHHHHHHHH-HHHHhhC---chh--hHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHH------HHHHHHH
Confidence 346677778888 4543321 222 357888999999988888888999999988776543211 3455555
Q ss_pred hhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccchH
Q 048113 270 LSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGT 324 (339)
Q Consensus 270 ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 324 (339)
++.+ ..+-..=+.++|.+..... .--.+..+++..+.+.+..+|+.++-.
T Consensus 474 lldt--i~vp~ARA~IiWLige~~e---~vpri~PDVLR~laksFs~E~~evKlQ 523 (968)
T KOG1060|consen 474 LLDT--ILVPAARAGIIWLIGEYCE---IVPRIAPDVLRKLAKSFSDEGDEVKLQ 523 (968)
T ss_pred Hhhh--hhhhhhhceeeeeehhhhh---hcchhchHHHHHHHHhhccccchhhHH
Confidence 5532 2222222346677766544 334466777777777776677666654
No 112
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.26 E-value=0.0011 Score=48.85 Aligned_cols=65 Identities=17% Similarity=0.140 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhc--CCChhHHHHHHHHHHHHhc-CccchHHHHh
Q 048113 56 IEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQ--CQSTTLIELTVAAMLILSS-CLENKLEIAS 120 (339)
Q Consensus 56 ~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~ 120 (339)
+..-.+.+++|+..++.++..+.+.|++|.++.... ..+|-+++.|.+++.||.. +++++..|.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 455678999999999999999999999999999754 4478999999999999996 5566776664
No 113
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=97.19 E-value=0.17 Score=51.32 Aligned_cols=246 Identities=16% Similarity=0.143 Sum_probs=147.6
Q ss_pred HHhcCChHHHHHHhccC-----CHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhc----CCC----hhHHHHH
Q 048113 35 LVERGIIAPLISMLCSQ-----DYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQ----CQS----TTLIELT 101 (339)
Q Consensus 35 i~~~g~i~~Lv~lL~~~-----~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~----~~~----~~~~~~a 101 (339)
+.+.|++..++.++.+- ..+.....++.|..+++ -+.||+.+.+.|+++.|+..+. .+. +++.+..
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 35799999999988762 44677778889999999 6999999999999999998774 323 4566655
Q ss_pred HHHHHHHhcCcc---chHH---HH-------hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCCh-
Q 048113 102 VAAMLILSSCLE---NKLE---IA-------SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLI- 167 (339)
Q Consensus 102 ~~~L~nLs~~~~---~~~~---i~-------~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~- 167 (339)
+.++-.+..... .... .. +...+..+++.+.++. ...++.+....+++|-+|+...+.+
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~-------~r~~~~i~~~l~RiLP~Lt~G~~e~m 264 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPF-------VRSNPQILQALARILPFLTYGNEEKM 264 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCcc-------ccCCHHHHHHHHHHhhHHhcCCHHHH
Confidence 555555442111 1110 00 1123556666665421 1146888999999999999865433
Q ss_pred HHHHhcCcHHHHHHHhhc---cccCchHHHHHHHHHHHhhcCCH---hhhHHHHhhCCcHHHHHHHhhcCCh--------
Q 048113 168 SPIVSSGVTYCLLQLIHS---SEKSSGLTEKAIALLENIVSSSE---DALQEIAATCGAIRALVETIEEGSP-------- 233 (339)
Q Consensus 168 ~~i~~~g~i~~Lv~ll~~---~~~~~~~~~~a~~~L~n~l~~~~---~~~~~i~~~~g~i~~Lv~lL~~~~~-------- 233 (339)
+.+++. +.+.+++=+. ..++......+..-+.+.+..+. .-|..+.+ .|++...++.|...-|
T Consensus 265 ~~Lv~~--F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~-~GIv~~a~~YL~~~~P~~~~~~s~ 341 (802)
T PF13764_consen 265 DALVEH--FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILE-SGIVQDAIDYLLKHFPSLKNTDSP 341 (802)
T ss_pred HHHHHH--HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hhHHHHHHHHHHHhCcccccCCCH
Confidence 333331 1222221110 01123444455555554454333 44677786 8999999998865322
Q ss_pred HH--------HHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcC-CHHHHHHHHHHHHHHhccC
Q 048113 234 QC--------KEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDG-TWRAKNMARDLLLLLRDCS 293 (339)
Q Consensus 234 ~~--------~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~A~~~L~~l~~~~ 293 (339)
+- ...++..|.-++....+ .+.++..+.+|.+=.|=... +..+=..|-.+|..|+.+.
T Consensus 342 eWk~~l~~psLp~iL~lL~GLa~gh~~--tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 342 EWKEFLSRPSLPYILRLLRGLARGHEP--TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhcCHH--HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 22 23567777888877544 23446667776665553322 3444466777777777644
No 114
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.18 E-value=0.071 Score=53.60 Aligned_cols=165 Identities=16% Similarity=0.161 Sum_probs=96.9
Q ss_pred cCCCCHHHHHHHHHHHHhhcC-C-CCChHHHHhc-C--------cHHHHHHHhhccccC--chHHHHHHHHHHHhhcCCH
Q 048113 142 YGRISVQAKIDAIATLHNLST-C-HQLISPIVSS-G--------VTYCLLQLIHSSEKS--SGLTEKAIALLENIVSSSE 208 (339)
Q Consensus 142 ~~~~~~~~~~~a~~~L~nLs~-~-~~~~~~i~~~-g--------~i~~Lv~ll~~~~~~--~~~~~~a~~~L~n~l~~~~ 208 (339)
.++.+.+++.+|..+|.+++. + ++.-..+.+. . .+..|...+...+.+ .+-.+.-++.|.+++-..+
T Consensus 866 f~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~e 945 (1233)
T KOG1824|consen 866 FNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAE 945 (1233)
T ss_pred cCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccch
Confidence 477888999999999999977 3 2333333332 0 222333334332211 2234455555655555555
Q ss_pred hhhHHHHhh----------CCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHH
Q 048113 209 DALQEIAAT----------CGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRA 278 (339)
Q Consensus 209 ~~~~~i~~~----------~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~ 278 (339)
++.+.++.+ ...+|.|-..+.++.+..+..++.+........+..... .....+.....++++++.++
T Consensus 946 egtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~--~lk~~ig~fl~~~~dpDl~V 1023 (1233)
T KOG1824|consen 946 EGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDP--LLKQQIGDFLKLLRDPDLEV 1023 (1233)
T ss_pred hhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCH--HHHHHHHHHHHHHhCCchhH
Confidence 554444321 224577777777777777777777765544443332222 22335667788899999999
Q ss_pred HHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHH
Q 048113 279 KNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEI 314 (339)
Q Consensus 279 ~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 314 (339)
++.|..++...+++.+ ..-.+.+..+++.+
T Consensus 1024 rrvaLvv~nSaahNKp------slIrDllpeLLp~L 1053 (1233)
T KOG1824|consen 1024 RRVALVVLNSAAHNKP------SLIRDLLPELLPLL 1053 (1233)
T ss_pred HHHHHHHHHHHHccCH------hHHHHHHHHHHHHH
Confidence 9999999988887643 23444444444443
No 115
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.0019 Score=61.92 Aligned_cols=248 Identities=17% Similarity=0.191 Sum_probs=141.2
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccc-hH-----H
Q 048113 44 LISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN-KL-----E 117 (339)
Q Consensus 44 Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~-~~-----~ 117 (339)
|..+..+.+..++..|+..|..|+.+..-.+. .....++++...+..+|..|+..++-.+.-.+. .+ .
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~------~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA------CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccHH------HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 44444444555555555555555443221111 235567888888888999998887766642211 11 0
Q ss_pred HHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHH
Q 048113 118 IASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKA 196 (339)
Q Consensus 118 i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a 196 (339)
=....+...+...+.. .+..++..|+.+|..+-. +.+...+-.+ .+++.-++.+- .-.+..
T Consensus 277 kl~D~aF~~vC~~v~D-----------~sl~VRV~AaK~lG~~~~vSee~i~QTLd----KKlms~lRRkr---~ahkrp 338 (823)
T KOG2259|consen 277 KLKDAAFSSVCRAVRD-----------RSLSVRVEAAKALGEFEQVSEEIIQQTLD----KKLMSRLRRKR---TAHKRP 338 (823)
T ss_pred hhHHHHHHHHHHHHhc-----------CceeeeehHHHHhchHHHhHHHHHHHHHH----HHHhhhhhhhh---hcccch
Confidence 0123356667777777 678888888888887644 2232222111 11222111110 000111
Q ss_pred HHHHHHhh--c------------CCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcC
Q 048113 197 IALLENIV--S------------SSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEG 262 (339)
Q Consensus 197 ~~~L~n~l--~------------~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g 262 (339)
-.... .- + ..++.-..+.. .|+=.++|.-|++.--+++..|+..++.|+..++. ... .
T Consensus 339 k~l~s-~GewSsGk~~~advpsee~d~~~~siI~-sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~-FA~-----~ 410 (823)
T KOG2259|consen 339 KALYS-SGEWSSGKEWNADVPSEEDDEEEESIIP-SGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG-FAV-----R 410 (823)
T ss_pred HHHHh-cCCcccCccccccCchhhcccccccccc-ccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC-cHH-----H
Confidence 11111 11 0 01111223444 67778888888877778999999999999987654 322 2
Q ss_pred ChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHH
Q 048113 263 VMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVE 330 (339)
Q Consensus 263 ~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~ 330 (339)
.+.-|+.++++....++.+|...|..++.+-. +..+.++.+...+.--..++++..+.+|.
T Consensus 411 aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 411 ALDFLVDMFNDEIEVVRLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREALRELLK 471 (823)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 57889999999999999999999999988642 44555555544442223555655555554
No 116
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.07 E-value=0.22 Score=45.05 Aligned_cols=216 Identities=15% Similarity=0.148 Sum_probs=125.8
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHh--cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113 85 VLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIAS--SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST 162 (339)
Q Consensus 85 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~--~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~ 162 (339)
-.+..+.......|+.++..+.++.........+.+ ...+..+.+.++. +..+-+..|+.++.-++.
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkk-----------g~~~E~~lA~~~l~Ll~l 115 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKK-----------GKSEEQALAARALALLAL 115 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcc-----------CCHHHHHHHHHHHHHHhh
Confidence 344445556678999999999888754444344432 3467788888887 555667778888777765
Q ss_pred C---CCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcC----CHhhhHHHHhhCCcHHHHHH--Hhhc-C-
Q 048113 163 C---HQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSS----SEDALQEIAATCGAIRALVE--TIEE-G- 231 (339)
Q Consensus 163 ~---~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~----~~~~~~~i~~~~g~i~~Lv~--lL~~-~- 231 (339)
. ......+++ ...|.|.+.+.++....+.+..|+.+|+ .++. .++......+ .+..+.. ..+. +
T Consensus 116 tlg~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLa-i~~fv~~~d~~~~~~~~~---~le~if~~~~~~~~~~ 190 (309)
T PF05004_consen 116 TLGAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALA-ICTFVGGSDEEETEELME---SLESIFLLSILKSDGN 190 (309)
T ss_pred hcCCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHH-HHHHhhcCChhHHHHHHH---HHHHHHHHHhcCcCCC
Confidence 4 244555555 4678888998886545566666666666 4432 2222221111 2222211 1221 1
Q ss_pred --------ChHHHHHHHHHHHHhhccCch-hHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCc-chhhh
Q 048113 232 --------SPQCKEHAVAILLLICKSCRD-KYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFG-SRSKQ 301 (339)
Q Consensus 232 --------~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~-~~~~~ 301 (339)
++.+.-.|+.+-.-|...-+. +... .-...+|.|..++.+.+..+|..|-..|..|....... .....
T Consensus 191 ~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~--~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~ 268 (309)
T PF05004_consen 191 APVVAAEDDAALVAAALSAWALLLTTLPDSKLED--LLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLY 268 (309)
T ss_pred cccccCCCccHHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 234566666554444433222 1221 12457999999999999999999999999886543210 00111
Q ss_pred hhhHHHHHHHHHHHhcC
Q 048113 302 LKNELVEQIMQEIDAEG 318 (339)
Q Consensus 302 ~~~~~~~~i~~~~~~~~ 318 (339)
-..+.+.+.++.+..+.
T Consensus 269 ~~~~~l~~~l~~La~dS 285 (309)
T PF05004_consen 269 EDMEELLEQLRELATDS 285 (309)
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 23445555566665554
No 117
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.07 E-value=0.12 Score=51.82 Aligned_cols=227 Identities=13% Similarity=0.119 Sum_probs=145.4
Q ss_pred CCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHh-ccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHH
Q 048113 11 NGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISML-CSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLL 87 (339)
Q Consensus 11 s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv 87 (339)
+..|.....|..++..++.. ....+... .+...+..+ .+..+.++..|+++++..++ +..... ...+++..|.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~-fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~-~~p~ild~L~ 536 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQH-FLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLS-LQPMILDGLL 536 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHHH-HHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccc-cchHHHHHHH
Confidence 55666666777777766654 11111111 112222322 33456677888888777774 221111 1346677788
Q ss_pred HhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCCh
Q 048113 88 EVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLI 167 (339)
Q Consensus 88 ~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~ 167 (339)
.+....+.++....+.+|+.....++....-.++...|.++.++...+ ++|.+...+-.++..|+....+.
T Consensus 537 qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s---------~DP~V~~~~qd~f~el~q~~~~~ 607 (1005)
T KOG2274|consen 537 QLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYS---------EDPQVASLAQDLFEELLQIAANY 607 (1005)
T ss_pred HHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhc---------CCchHHHHHHHHHHHHHHHHHhh
Confidence 887777888999999999999988777776667778888888775533 78888888888888887755544
Q ss_pred HHHHhcCcHHHHHHHhhcccc--CchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHh-hcCChHHHHHHHHHHH
Q 048113 168 SPIVSSGVTYCLLQLIHSSEK--SSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETI-EEGSPQCKEHAVAILL 244 (339)
Q Consensus 168 ~~i~~~g~i~~Lv~ll~~~~~--~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~ 244 (339)
..+.+ -.+|.++..|+.+.. +..+..-++.+|...+...|.--....- .-++|++.+.. .+++.....++-.||.
T Consensus 608 g~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLr 685 (1005)
T KOG2274|consen 608 GPMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLR 685 (1005)
T ss_pred cchHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHH
Confidence 44433 379999999977531 2456666777776334334332222222 24678888855 4566788888999999
Q ss_pred HhhccCch
Q 048113 245 LICKSCRD 252 (339)
Q Consensus 245 ~l~~~~~~ 252 (339)
.+.....+
T Consensus 686 a~Is~~~e 693 (1005)
T KOG2274|consen 686 ALISVTLE 693 (1005)
T ss_pred HHHhcCHH
Confidence 88876443
No 118
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.06 E-value=0.0016 Score=42.41 Aligned_cols=55 Identities=16% Similarity=0.076 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhh
Q 048113 95 TTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNL 160 (339)
Q Consensus 95 ~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nL 160 (339)
+.+|..|+++|.+++...+....-.....++.|+.+|++ ++..++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d-----------~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQD-----------DDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTS-----------SSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHhcC
Confidence 468999999999988766554444567789999999988 6779999999999875
No 119
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.00 E-value=0.23 Score=47.52 Aligned_cols=291 Identities=12% Similarity=0.076 Sum_probs=169.6
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHH--hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113 6 MDNLLNGERETQIQAANELGKLSRR-QKHKLV--ERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI 82 (339)
Q Consensus 6 v~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~ 82 (339)
-..+++++|.-|..|+.++..+.++ +..... =...+|.+..+..++.-.+...++|+++.++.+ ....|-..|-
T Consensus 372 Eqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~---va~~i~p~~H 448 (858)
T COG5215 372 EQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH---VAMIISPCGH 448 (858)
T ss_pred HHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH---HHHhcCcccc
Confidence 3457789999999999999999987 333332 256778888888877778999999999999984 2333434455
Q ss_pred hHHHHHhhc---CCChhHHHHHHHHHHHHhcCccc-h---HH-HHh--cchHHHHHHHhcCCCCCCCCccCCCCHHHHHH
Q 048113 83 VPVLLEVLQ---CQSTTLIELTVAAMLILSSCLEN-K---LE-IAS--SGAIQRLVEILNGDLADDDNSYGRISVQAKID 152 (339)
Q Consensus 83 i~~Lv~lL~---~~~~~~~~~a~~~L~nLs~~~~~-~---~~-i~~--~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~ 152 (339)
++..++-.. .+.|....++.|...||..+-.. - +. +.. ...+..|++.-.... ++...|..
T Consensus 449 l~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~---------Ne~n~R~s 519 (858)
T COG5215 449 LVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELAL---------NESNLRVS 519 (858)
T ss_pred ccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhc---------cchhHHHH
Confidence 555554322 22466788899999999853221 1 11 111 123444444332211 35567777
Q ss_pred HHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhcc----------c---cCchHHHHHHHHHHHhhcCCHhhhHHHHhhC
Q 048113 153 AIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSS----------E---KSSGLTEKAIALLENIVSSSEDALQEIAATC 218 (339)
Q Consensus 153 a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~----------~---~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~ 218 (339)
+..+|..|.. .++....+. +|+.....+-|..+ + ..++++.+-+.+|...+...+...+... .
T Consensus 520 ~fsaLgtli~~~~d~V~~~~-a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~--D 596 (858)
T COG5215 520 LFSALGTLILICPDAVSDIL-AGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVE--D 596 (858)
T ss_pred HHHHHHHHHhhcchhHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHH--H
Confidence 7888887754 444332221 12222222222110 0 0133444445555533333322222221 1
Q ss_pred CcHHHHHHHhhcCC-hHHHHHHHHHHHHhhccCchhHHHHHH--hcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCC
Q 048113 219 GAIRALVETIEEGS-PQCKEHAVAILLLICKSCRDKYRSSIL--KEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSF 295 (339)
Q Consensus 219 g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 295 (339)
-...-++++|++.. .-+......++.+++..-+ +.+. ....+|.|.+-++..+..+-..|++...-|++.=+.
T Consensus 597 ~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~----e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~ 672 (858)
T COG5215 597 QLMELFIRILESTKPTTAFGDVYTAISALSTSLE----ERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGT 672 (858)
T ss_pred HHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHH----HHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhh
Confidence 24556677777753 3345556666666664322 2332 357899999989888888889999999888874321
Q ss_pred cchhhhhhhHHHHHHHHHHHhc
Q 048113 296 GSRSKQLKNELVEQIMQEIDAE 317 (339)
Q Consensus 296 ~~~~~~~~~~~~~~i~~~~~~~ 317 (339)
...-..+.....+++.+..+
T Consensus 673 --df~~y~d~~ms~LvQ~lss~ 692 (858)
T COG5215 673 --DFNIYADVLMSSLVQCLSSE 692 (858)
T ss_pred --hHHHHHHHHHHHHHHHhcCh
Confidence 23335567777777777643
No 120
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.98 E-value=0.024 Score=55.36 Aligned_cols=247 Identities=13% Similarity=0.203 Sum_probs=141.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhccCCcchh---hHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccc-hHHH
Q 048113 43 PLISMLCSQDYEAIEAALLSLLSLACGSERNK---IRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN-KLEI 118 (339)
Q Consensus 43 ~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~---~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~-~~~i 118 (339)
..+..|++.++.++..|+..+..++. --..+ ..+...|+| |...|....+++.-..+.+++.+...-.- +..=
T Consensus 803 tiL~rLnnksa~vRqqaadlis~la~-Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~km~p 879 (1172)
T KOG0213|consen 803 TILWRLNNKSAKVRQQAADLISSLAK-VLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTP 879 (1172)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHH-HHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhccccccCC
Confidence 34456778899999999999998887 23333 234444543 66778888888776666666555432211 1100
Q ss_pred HhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCC---hHHHHhcCcHHHHHHHhhccccCchHHH
Q 048113 119 ASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQL---ISPIVSSGVTYCLLQLIHSSEKSSGLTE 194 (339)
Q Consensus 119 ~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~---~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 194 (339)
--.+.+|.|..+|++ .+.+++++++..+..++.. ++. |.++.=+ --|+.+|+++ ...+++
T Consensus 880 Pi~dllPrltPILkn-----------rheKVqen~IdLvg~IadrgpE~v~aREWMRIc---feLlelLkah--kK~iRR 943 (1172)
T KOG0213|consen 880 PIKDLLPRLTPILKN-----------RHEKVQENCIDLVGTIADRGPEYVSAREWMRIC---FELLELLKAH--KKEIRR 943 (1172)
T ss_pred ChhhhcccchHhhhh-----------hHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHH---HHHHHHHHHH--HHHHHH
Confidence 125689999999999 8999999999999999874 442 4555332 3477788776 368888
Q ss_pred HHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHH--HHHHHhhccCchhHHHHHHhcCChHHHHHhhh
Q 048113 195 KAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAV--AILLLICKSCRDKYRSSILKEGVMPGLLQLSV 272 (339)
Q Consensus 195 ~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~--~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~ 272 (339)
+|..+++ .++. .+.- .+++..|++-|+. .+.|...+ .++.-.+..+++ ..++|.|+.=-+
T Consensus 944 aa~nTfG-~Iak------aIGP-qdVLatLlnnLkv--qeRq~RvcTtvaIaIVaE~c~p--------FtVLPalmneYr 1005 (1172)
T KOG0213|consen 944 AAVNTFG-YIAK------AIGP-QDVLATLLNNLKV--QERQNRVCTTVAIAIVAETCGP--------FTVLPALMNEYR 1005 (1172)
T ss_pred HHHhhhh-HHHH------hcCH-HHHHHHHHhcchH--HHHHhchhhhhhhhhhhhhcCc--------hhhhHHHHhhcc
Confidence 8888888 3321 1111 1233333333332 22222222 122222221111 236777776666
Q ss_pred cCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH---hcCccc-chHHHHHHHHH
Q 048113 273 DGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID---AEGDTV-AGTTLRLVEEM 332 (339)
Q Consensus 273 ~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~-~~~a~~~l~~~ 332 (339)
.++..+|.-.+..|..+-.. .-++..+-+-.+...+. -|-|.+ +++|..++.-+
T Consensus 1006 tPe~nVQnGVLkalsf~Fey------igemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1006 TPEANVQNGVLKALSFMFEY------IGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred CchhHHHHhHHHHHHHHHHH------HHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHH
Confidence 67777777666666555432 12244444444443332 344444 55666655443
No 121
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.96 E-value=0.28 Score=47.03 Aligned_cols=255 Identities=16% Similarity=0.173 Sum_probs=143.4
Q ss_pred hccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHH
Q 048113 48 LCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRL 127 (339)
Q Consensus 48 L~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L 127 (339)
|++.-..+...+++.++.++..+ ....+.+ ..+..|-.+|.++....|-.|+++|-.|+...+.+..+.... +
T Consensus 273 ls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~e----v 345 (898)
T COG5240 273 LSDKFEMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKE----V 345 (898)
T ss_pred hcCcchhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChh----H
Confidence 44445678888999999988843 1122221 256777778888888899999999999998666555443322 2
Q ss_pred HHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCC
Q 048113 128 VEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSS 207 (339)
Q Consensus 128 v~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~ 207 (339)
-+++.+ .+..+...|+.+|.. ...+++...++. .|+.+++=+.++ -..+...|+..|+++....
T Consensus 346 EsLIsd-----------~Nr~IstyAITtLLK-TGt~e~idrLv~--~I~sfvhD~SD~--FKiI~ida~rsLsl~Fp~k 409 (898)
T COG5240 346 ESLISD-----------ENRTISTYAITTLLK-TGTEETIDRLVN--LIPSFVHDMSDG--FKIIAIDALRSLSLLFPSK 409 (898)
T ss_pred HHHhhc-----------ccccchHHHHHHHHH-cCchhhHHHHHH--HHHHHHHhhccC--ceEEeHHHHHHHHhhCcHH
Confidence 334444 455555566655544 234455555443 244444444432 2345566666666322111
Q ss_pred Hhhh-----HHHHhhCCc-------HHHHHHHhhcCChHHHHHHHHHHHHhhccCch-hHHHHHH----hcC--------
Q 048113 208 EDAL-----QEIAATCGA-------IRALVETIEEGSPQCKEHAVAILLLICKSCRD-KYRSSIL----KEG-------- 262 (339)
Q Consensus 208 ~~~~-----~~i~~~~g~-------i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~----~~g-------- 262 (339)
.... ..+.+ .|+ +..+.+.++. .|..++.|+..|+.+..++.- +..-.+. ++|
T Consensus 410 ~~s~l~FL~~~L~~-eGg~eFK~~~Vdaisd~~~~-~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~ 487 (898)
T COG5240 410 KLSYLDFLGSSLLQ-EGGLEFKKYMVDAISDAMEN-DPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGK 487 (898)
T ss_pred HHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHhh-CchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcch
Confidence 1110 11223 343 4455555543 577788888888777654321 1111111 122
Q ss_pred ChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhc-CcccchHHHHHHHHH
Q 048113 263 VMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAE-GDTVAGTTLRLVEEM 332 (339)
Q Consensus 263 ~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~a~~~l~~~ 332 (339)
.+-.+...+--.+..++..|+.+|.-++-+. .+......++.++..+.-| +|++|+.|...|..+
T Consensus 488 yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~-----~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 488 YVRHIYNRLILENNIVRSAAVQALSKFALNI-----SDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhccCc-----cccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 2233333333356778888888887776543 2234455566666666544 578899988887654
No 122
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.96 E-value=0.0053 Score=51.16 Aligned_cols=122 Identities=15% Similarity=0.082 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHHHhccCCcchhhHHhhc----------------CChHHHHHhhcCC------ChhHHHHHHHHHHHH
Q 048113 51 QDYEAIEAALLSLLSLACGSERNKIRIVKS----------------GIVPVLLEVLQCQ------STTLIELTVAAMLIL 108 (339)
Q Consensus 51 ~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~----------------g~i~~Lv~lL~~~------~~~~~~~a~~~L~nL 108 (339)
........+++.|.|+++ .+..+..+.+. ..+..|+..+..+ ...-..+.+.++.|+
T Consensus 7 ~~~~~adl~~MLLsNlT~-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTR-SDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCcchHHHHHHHHHHhcc-chHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 344566678888899998 56666655433 2466777766551 234567788999999
Q ss_pred hcCccchHHHHhc--ch--HHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhc---CcHHHHHH
Q 048113 109 SSCLENKLEIASS--GA--IQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSS---GVTYCLLQ 181 (339)
Q Consensus 109 s~~~~~~~~i~~~--g~--i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~---g~i~~Lv~ 181 (339)
+..+..|..+.+. +. +.+|+.++.+ .+.--|.-++.+|.|+|.+.+....+... ++++.|+-
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~-----------~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLl 154 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEH-----------KSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLL 154 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhcc-----------CcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHh
Confidence 9999999988854 34 7788888877 67778888999999999999888888763 45555554
Q ss_pred Hhh
Q 048113 182 LIH 184 (339)
Q Consensus 182 ll~ 184 (339)
-|.
T Consensus 155 PLa 157 (192)
T PF04063_consen 155 PLA 157 (192)
T ss_pred hcc
Confidence 444
No 123
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.94 E-value=0.3 Score=49.37 Aligned_cols=317 Identities=14% Similarity=0.156 Sum_probs=175.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113 5 LMDNLLNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCS-QDYEAIEAALLSLLSLACGSERNKIRIVKSGI 82 (339)
Q Consensus 5 Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~ 82 (339)
++.-|.+....+|.+|+-+|+.++.. ++..+.+ .+.-|++=|.. ..+...+.-.++|..++.. ...|.--.-...
T Consensus 179 l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~--li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~-ag~r~~~h~~~i 255 (1233)
T KOG1824|consen 179 LLPQLQSPRLAVRKKAITALGHLASSCNRDLYVE--LIEHLLKGLSNRTQMSATRTYIQCLAAICRQ-AGHRFGSHLDKI 255 (1233)
T ss_pred HhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHH--HHHHHHhccCCCCchHHHHHHHHHHHHHHHH-hcchhhcccchh
Confidence 44455677888999999999999987 5554432 34445544433 3445555566777777772 222222222357
Q ss_pred hHHHHHhh---cCCChhHHHHHHHHHHHHhcCccchHHHH--hcchHHHHHHHhcCC-----CCCCC------------C
Q 048113 83 VPVLLEVL---QCQSTTLIELTVAAMLILSSCLENKLEIA--SSGAIQRLVEILNGD-----LADDD------------N 140 (339)
Q Consensus 83 i~~Lv~lL---~~~~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~Lv~ll~~~-----~~~~~------------~ 140 (339)
+|.+.+.. +..++++++.++.++..+....+ ..|. ....+..+++.+..+ ++++| +
T Consensus 256 vp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp--~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde 333 (1233)
T KOG1824|consen 256 VPLVADYCNKIEEDDDELREYCLQALESFLRRCP--KEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDE 333 (1233)
T ss_pred hHHHHHHhcccccCcHHHHHHHHHHHHHHHHhCh--hhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccch
Confidence 89999988 66788999999999988775322 1221 233555666666432 11111 1
Q ss_pred --ccCC----CCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHH---hhcCC---
Q 048113 141 --SYGR----ISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLEN---IVSSS--- 207 (339)
Q Consensus 141 --~~~~----~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n---~l~~~--- 207 (339)
+..+ -++.+|..|++++..+.. ..+.-..+.+. .-|.++.-++..+ +.++.....++-. .....
T Consensus 334 ~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~-l~p~lI~RfkERE--EnVk~dvf~~yi~ll~qt~~~~~~ 410 (1233)
T KOG1824|consen 334 QDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQT-LGPALISRFKERE--ENVKADVFHAYIALLKQTRPVIEV 410 (1233)
T ss_pred hccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHH-hCHHHHHHHHHHh--hhHHHHHHHHHHHHHHcCCCCccc
Confidence 1122 256799999999999865 44555555544 3366777776642 4444433333221 22111
Q ss_pred ------------HhhhHHHHhh-CCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc-
Q 048113 208 ------------EDALQEIAAT-CGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD- 273 (339)
Q Consensus 208 ------------~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~- 273 (339)
+.++..+.++ .-.+..+-+.+++.+.+.+..+...|..+....+...-+ ..-..+|.+..-+.+
T Consensus 411 ~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~--~~~slvpgI~~~l~Dk 488 (1233)
T KOG1824|consen 411 LADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQ--HIPSLVPGIIYSLNDK 488 (1233)
T ss_pred ccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhh--cccccchhhhhhcCCc
Confidence 1111111110 112344455555555556666666666666544331111 113467777776665
Q ss_pred -CCHHHHHHHHHHHHHH-hccCCCcchhhhhhhHHHHHHHHHHH-hcC---cccchHHHHHHHHHHHHhc
Q 048113 274 -GTWRAKNMARDLLLLL-RDCSSFGSRSKQLKNELVEQIMQEID-AEG---DTVAGTTLRLVEEMIAKLS 337 (339)
Q Consensus 274 -~~~~~~~~A~~~L~~l-~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~---~~~~~~a~~~l~~~v~~~~ 337 (339)
.++..+..|...|.+. ..+++. .....+..+...+. .-| -++..+|..++.+.|+.+-
T Consensus 489 Ssss~~ki~~L~fl~~~L~s~~p~------~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvir 552 (1233)
T KOG1824|consen 489 SSSSNLKIDALVFLYSALISHPPE------VFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIR 552 (1233)
T ss_pred cchHHHHHHHHHHHHHHHhcCChh------hcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhc
Confidence 3466678888877554 343331 22334444444443 123 4557778888888887653
No 124
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.94 E-value=0.11 Score=46.98 Aligned_cols=194 Identities=18% Similarity=0.179 Sum_probs=117.7
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh--cCChHHHHHhhcCCChhHHHHHHHHHHHHhcC---ccch
Q 048113 41 IAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK--SGIVPVLLEVLQCQSTTLIELTVAAMLILSSC---LENK 115 (339)
Q Consensus 41 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~---~~~~ 115 (339)
+...+..+...+...|+.|+..+.++-.+. .....+.+ .-.+..+.+.++.+..+-+..|+.++.-++.. ....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~-~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSR-YLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 334455566678899999999998888732 22222322 24578888888888766677777777777643 1223
Q ss_pred HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCChHHHHhc-CcHHHHHHH--hhcc-----
Q 048113 116 LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQLISPIVSS-GVTYCLLQL--IHSS----- 186 (339)
Q Consensus 116 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~-g~i~~Lv~l--l~~~----- 186 (339)
..+.+ ...|.|.+++...+ .++..+..++.+|.-++.. ...-..+.+. ..++.+... .+..
T Consensus 124 ~ei~~-~~~~~L~~~l~d~s---------~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~ 193 (309)
T PF05004_consen 124 EEIFE-ELKPVLKRILTDSS---------ASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPV 193 (309)
T ss_pred HHHHH-HHHHHHHHHHhCCc---------cchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCccc
Confidence 33333 46788888887742 5667777777777766552 2222222211 122222111 2211
Q ss_pred ---ccCchHHHHHHHHHHHhh-cCCHhh-hHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhc
Q 048113 187 ---EKSSGLTEKAIALLENIV-SSSEDA-LQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICK 248 (339)
Q Consensus 187 ---~~~~~~~~~a~~~L~n~l-~~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 248 (339)
.+++.+...|+.+-+ ++ +..+.. ..... ...++.|+.+|++++..++..|-.+|+-+..
T Consensus 194 ~~~~~~~~l~~aAL~aW~-lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 194 VAAEDDAALVAAALSAWA-LLLTTLPDSKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred ccCCCccHHHHHHHHHHH-HHHhcCCHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 113457777776666 33 333432 23333 3579999999999999999999888877753
No 125
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.91 E-value=0.24 Score=42.93 Aligned_cols=232 Identities=15% Similarity=0.140 Sum_probs=133.0
Q ss_pred ChhHHHHHHHHHHHHhcCccc-hHHHH-hcchHHHHHHHh-cCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHH
Q 048113 94 STTLIELTVAAMLILSSCLEN-KLEIA-SSGAIQRLVEIL-NGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPI 170 (339)
Q Consensus 94 ~~~~~~~a~~~L~nLs~~~~~-~~~i~-~~g~i~~Lv~ll-~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i 170 (339)
+++.|+.|+.-|..--..-+. ...+- ..|.+..|++=+ .-...-...........-.-+|+..|..++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 466777654444333222222 22232 457777666522 221000000000011233345777777888999999999
Q ss_pred HhcCcHHHHHHHhhcccc---CchHHHHHHHHHHHhhcC--CHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHH
Q 048113 171 VSSGVTYCLLQLIHSSEK---SSGLTEKAIALLENIVSS--SEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLL 245 (339)
Q Consensus 171 ~~~g~i~~Lv~ll~~~~~---~~~~~~~a~~~L~n~l~~--~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 245 (339)
.++.+.-.|..+|...++ .+.++-.++++++ -+.+ +++....+.+ .+.+|..++.++.+++..+..|..++..
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIg-aLvK~d~~evi~fLl~-tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIG-ALVKTDDPEVISFLLQ-TEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHH-HHHTT--HHHHHHHHC-TTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHH-HHHcCCcHHHHHHHHh-hchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999988888888866543 2567788999999 5554 3445555665 7999999999999999999999999987
Q ss_pred hhccCchhHHH-------HHHh-cCChHHHH-HhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHh
Q 048113 246 ICKSCRDKYRS-------SILK-EGVMPGLL-QLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDA 316 (339)
Q Consensus 246 l~~~~~~~~~~-------~~~~-~g~i~~L~-~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 316 (339)
+-.++ .+-+ ++.. ..++..++ .+..+.+++.-+....+-..|++++. . .+.+.+.+....-
T Consensus 166 IL~dd--~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr----a----r~aL~~~LP~~Lr 235 (262)
T PF04078_consen 166 ILLDD--VGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR----A----REALRQCLPDQLR 235 (262)
T ss_dssp HHHSH--HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT----H----HHHHHHHS-GGGT
T ss_pred HHcch--hHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH----H----HHHHHHhCcHHHh
Confidence 75542 1222 2222 22333333 34667788888898999888888763 1 3333343333334
Q ss_pred cC---ccc--chHHHHHHHHHHHHhc
Q 048113 317 EG---DTV--AGTTLRLVEEMIAKLS 337 (339)
Q Consensus 317 ~~---~~~--~~~a~~~l~~~v~~~~ 337 (339)
|| .-+ -..+++.+..++..++
T Consensus 236 d~~f~~~l~~D~~~k~~l~qLl~nl~ 261 (262)
T PF04078_consen 236 DGTFSNILKDDPSTKRWLQQLLSNLN 261 (262)
T ss_dssp SSTTTTGGCS-HHHHHHHHHHHHHTT
T ss_pred cHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 44 111 2237788877776654
No 126
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.89 E-value=0.18 Score=43.16 Aligned_cols=149 Identities=14% Similarity=0.037 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCC-----ChhHHHHHHHHHHHHhcCccc--hHHHHhcchHHH
Q 048113 54 EAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQ-----STTLIELTVAAMLILSSCLEN--KLEIASSGAIQR 126 (339)
Q Consensus 54 ~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~nLs~~~~~--~~~i~~~g~i~~ 126 (339)
.-..+|+..|..+++ .|+.|..|.++-.--.|-++|... .+-+|..+++.+..|...++- ...+...+.||.
T Consensus 94 nRVcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 94 NRVCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred chHHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 445678888888899 599999999998766666666433 356899999999999965542 344558899999
Q ss_pred HHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhc-Cc-------HHHHHHHhhccccCchHHHHHHH
Q 048113 127 LVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSS-GV-------TYCLLQLIHSSEKSSGLTEKAIA 198 (339)
Q Consensus 127 Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~-g~-------i~~Lv~ll~~~~~~~~~~~~a~~ 198 (339)
.++.+.. ++...+..|..++..+-.++.+-..+++. .- +..++.-+.+. ++..+..++++
T Consensus 173 CLrime~-----------GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~-ps~RllKhviR 240 (293)
T KOG3036|consen 173 CLRIMES-----------GSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSM-PSPRLLKHVIR 240 (293)
T ss_pred HHHHHhc-----------ccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHH
Confidence 9999999 89999999999999988888887777664 32 23333333332 36788999999
Q ss_pred HHHHhhcCCHhhhHHHHh
Q 048113 199 LLENIVSSSEDALQEIAA 216 (339)
Q Consensus 199 ~L~n~l~~~~~~~~~i~~ 216 (339)
+.- .++.+++.|..+..
T Consensus 241 cYl-rLsdnprar~aL~~ 257 (293)
T KOG3036|consen 241 CYL-RLSDNPRARAALRS 257 (293)
T ss_pred HHH-HhcCCHHHHHHHHh
Confidence 999 79999988877753
No 127
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.89 E-value=0.013 Score=48.79 Aligned_cols=124 Identities=15% Similarity=0.048 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHhhcCCCCChHHHHhc----------------CcHHHHHHHhhccc----cCchHHHHHHHHHHHhhc
Q 048113 146 SVQAKIDAIATLHNLSTCHQLISPIVSS----------------GVTYCLLQLIHSSE----KSSGLTEKAIALLENIVS 205 (339)
Q Consensus 146 ~~~~~~~a~~~L~nLs~~~~~~~~i~~~----------------g~i~~Lv~ll~~~~----~~~~~~~~a~~~L~n~l~ 205 (339)
.......++..|.||++.++.+..+.+. ..+..|++.+..+. ....-......++. |++
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~-NlS 86 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA-NLS 86 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH-Hhc
Confidence 4446667888999999988888766544 25678888876611 12445677889999 899
Q ss_pred CCHhhhHHHHhhC-Cc--HHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHh---cCChHHHHHhhh
Q 048113 206 SSEDALQEIAATC-GA--IRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILK---EGVMPGLLQLSV 272 (339)
Q Consensus 206 ~~~~~~~~i~~~~-g~--i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---~g~i~~L~~ll~ 272 (339)
..+++|..+.+.. +. +..|+-++++.+...+.-+++++.|+|++... -..+.. .+++|.|+--+-
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~--H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDS--HEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhH--HHHhcCchhhhhHHHHHhhcc
Confidence 9999999998632 33 67788888888888889999999999987533 344444 255666554433
No 128
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.86 E-value=0.37 Score=46.15 Aligned_cols=262 Identities=12% Similarity=0.054 Sum_probs=154.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcC----ChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHH
Q 048113 13 ERETQIQAANELGKLSRRQKHKLVERG----IIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLE 88 (339)
Q Consensus 13 ~~~~~~~a~~~L~~l~~~~~~~i~~~g----~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~ 88 (339)
+..+|..|+.+|.+-....+..|...+ .+...++.-++++.+++..|..+|..+-.-+...-....+.-......+
T Consensus 191 ~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~ 270 (858)
T COG5215 191 TSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGR 270 (858)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788888888884444444343333 2333345556779999999999998776643444444445545556667
Q ss_pred hhcCCChhHHHHHHHHHHHHhcCc-cchH----------------HHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHH
Q 048113 89 VLQCQSTTLIELTVAAMLILSSCL-ENKL----------------EIASSGAIQRLVEILNGDLADDDNSYGRISVQAKI 151 (339)
Q Consensus 89 lL~~~~~~~~~~a~~~L~nLs~~~-~~~~----------------~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~ 151 (339)
.++++++++...|...-.-++..+ +... .-.-.+.+|.|+++|.+.+. ++..++...-.
T Consensus 271 ~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~e----d~~~DdWn~sm 346 (858)
T COG5215 271 FMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGE----DYYGDDWNPSM 346 (858)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCC----Cccccccchhh
Confidence 788888888777765443332211 1000 01124578999999966321 11123444555
Q ss_pred HHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccc--cCchHHHHHHHHHHHhhcC-CHhhhHHHHhhCCcHHHHHHHh
Q 048113 152 DAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSE--KSSGLTEKAIALLENIVSS-SEDALQEIAATCGAIRALVETI 228 (339)
Q Consensus 152 ~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~--~~~~~~~~a~~~L~n~l~~-~~~~~~~i~~~~g~i~~Lv~lL 228 (339)
.|..+|.-.+.... .. .+.+...+....- ++-.-++.+..+++..+-. +...+..++. .++|.+...+
T Consensus 347 aA~sCLqlfaq~~g--d~-----i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~--qalp~i~n~m 417 (858)
T COG5215 347 AASSCLQLFAQLKG--DK-----IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVP--QALPGIENEM 417 (858)
T ss_pred hHHHHHHHHHHHhh--hH-----hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHH--hhhHHHHHhc
Confidence 55555554433221 12 2333333332211 1223467788888833322 2345666774 6899999999
Q ss_pred hcCChHHHHHHHHHHHHhhccCchhHHHHHHh-cCChHHHHHhhhc---CCHHHHHHHHHHHHHHhcc
Q 048113 229 EEGSPQCKEHAVAILLLICKSCRDKYRSSILK-EGVMPGLLQLSVD---GTWRAKNMARDLLLLLRDC 292 (339)
Q Consensus 229 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~g~i~~L~~ll~~---~~~~~~~~A~~~L~~l~~~ 292 (339)
.++.-.+++.++||+..++.+ . ..++. .|-++..+.-..- +.|..-.+..|...+|.++
T Consensus 418 ~D~~l~vk~ttAwc~g~iad~----v-a~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h 480 (858)
T COG5215 418 SDSCLWVKSTTAWCFGAIADH----V-AMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDH 480 (858)
T ss_pred ccceeehhhHHHHHHHHHHHH----H-HHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHh
Confidence 888888999999999999854 2 23343 6666666654332 3566667777777777654
No 129
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.85 E-value=0.13 Score=43.97 Aligned_cols=149 Identities=13% Similarity=0.033 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccC-----CHHHHHHHHHHHHHhccCCcch-hhHHhhcCChHHH
Q 048113 15 ETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQ-----DYEAIEAALLSLLSLACGSERN-KIRIVKSGIVPVL 86 (339)
Q Consensus 15 ~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~-----~~~~~~~A~~~L~~Ls~~~~~~-~~~i~~~g~i~~L 86 (339)
.-...|+..|.-++.+ .|..|.++-+--.+-.+|... .+..|..++.+++.|.+.+++. -..+...++||..
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 3445667777777776 899999988777777777643 5678999999999999954443 3345567999999
Q ss_pred HHhhcCCChhHHHHHHHHHHHHhcCccchHHHHh--------cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113 87 LEVLQCQSTTLIELTVAAMLILSSCLENKLEIAS--------SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH 158 (339)
Q Consensus 87 v~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~--------~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~ 158 (339)
++.++.+++..+..|..++..+..++.+-..+.. ...+..++..+.+. .++...++++++..
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~----------ps~RllKhviRcYl 243 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSM----------PSPRLLKHVIRCYL 243 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcC----------CCHHHHHHHHHHHH
Confidence 9999999999999999999999888877554442 22445555555443 78899999999999
Q ss_pred hhcCCCCChHHHHhc
Q 048113 159 NLSTCHQLISPIVSS 173 (339)
Q Consensus 159 nLs~~~~~~~~i~~~ 173 (339)
+|+.++..|..+..+
T Consensus 244 rLsdnprar~aL~~c 258 (293)
T KOG3036|consen 244 RLSDNPRARAALRSC 258 (293)
T ss_pred HhcCCHHHHHHHHhh
Confidence 999998877766553
No 130
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.69 E-value=0.19 Score=41.42 Aligned_cols=111 Identities=21% Similarity=0.174 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCCh-HHHHHhhc
Q 048113 13 ERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIV-PVLLEVLQ 91 (339)
Q Consensus 13 ~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i-~~Lv~lL~ 91 (339)
+|.+|..++.+++.++..+.. .-...++.+...|+++++.+|..|+.+|.+|... +-.+ -.|-+ ..++.++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik----~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIK----VKGQLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-Ccee----ehhhhhHHHHHHHc
Confidence 578899999999999865211 1244578889999999999999999999999883 2222 12333 77888899
Q ss_pred CCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcC
Q 048113 92 CQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNG 133 (339)
Q Consensus 92 ~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~ 133 (339)
.++++++..|...+..++..... ..+ ...++.++..+.+
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~~~~-~~i--~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKKRNP-NII--YNNFPELISSLNN 112 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHhccc-hHH--HHHHHHHHHHHhC
Confidence 99999999999999998865211 111 2345555555544
No 131
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.26 Score=50.94 Aligned_cols=227 Identities=18% Similarity=0.180 Sum_probs=133.6
Q ss_pred HhccCCHHHHHHHHHHHHHhccCCcchhhHHhhc--CChHHHHHhhcCCChhHHHHHHHHHHHHhcCccc-hHHHHhcch
Q 048113 47 MLCSQDYEAIEAALLSLLSLACGSERNKIRIVKS--GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN-KLEIASSGA 123 (339)
Q Consensus 47 lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~-~~~i~~~g~ 123 (339)
+.++.+..+|..+.+.|..++.. +.......+. .....|.+-+++.+...+...+.+|..|-...+. ..... ...
T Consensus 662 ~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i-~k~ 739 (1176)
T KOG1248|consen 662 FENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI-PKL 739 (1176)
T ss_pred hhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH-HHH
Confidence 34455889999999999999994 4443333332 3345555666666666777777777776643221 11111 223
Q ss_pred HHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcC------cHHHHHHHhhccccCchHHHHHH
Q 048113 124 IQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSG------VTYCLLQLIHSSEKSSGLTEKAI 197 (339)
Q Consensus 124 i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g------~i~~Lv~ll~~~~~~~~~~~~a~ 197 (339)
|+.++=.++. .+...+..|..+|..++. .....+.| .+...+..+.-+.-.+.....+.
T Consensus 740 I~EvIL~~Ke-----------~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as 804 (1176)
T KOG1248|consen 740 IPEVILSLKE-----------VNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVAS 804 (1176)
T ss_pred HHHHHHhccc-----------ccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHH
Confidence 3333333344 788999999999998873 11111222 45555555544321223333333
Q ss_pred HHHHHhhcCCHhhhHHHHh---hCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcC
Q 048113 198 ALLENIVSSSEDALQEIAA---TCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDG 274 (339)
Q Consensus 198 ~~L~n~l~~~~~~~~~i~~---~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~ 274 (339)
.+++ .-..-.+. ..+.+ -.+.+..+...|.++++.+...|++.+..++...+.. .-.-...-.+|.+..+.++.
T Consensus 805 ~Iva-i~~il~e~-~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~-~l~~~~~~LL~sll~ls~d~ 881 (1176)
T KOG1248|consen 805 DIVA-ITHILQEF-KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEE-CLSPHLEELLPSLLALSHDH 881 (1176)
T ss_pred HHHH-HHHHHHHH-hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHH-HHhhhHHHHHHHHHHHHHhh
Confidence 2333 11111111 11111 0245566666777889999999999999998776542 22222234789999999999
Q ss_pred CHHHHHHHHHHHHHHh-ccC
Q 048113 275 TWRAKNMARDLLLLLR-DCS 293 (339)
Q Consensus 275 ~~~~~~~A~~~L~~l~-~~~ 293 (339)
+..++.+...++..|. +++
T Consensus 882 k~~~r~Kvr~LlekLirkfg 901 (1176)
T KOG1248|consen 882 KIKVRKKVRLLLEKLIRKFG 901 (1176)
T ss_pred hHHHHHHHHHHHHHHHHHhC
Confidence 9999999999996554 444
No 132
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.63 E-value=0.059 Score=55.45 Aligned_cols=258 Identities=12% Similarity=0.076 Sum_probs=150.3
Q ss_pred CHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhc----CccchHHHHhcchHHHH
Q 048113 52 DYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSS----CLENKLEIASSGAIQRL 127 (339)
Q Consensus 52 ~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~----~~~~~~~i~~~g~i~~L 127 (339)
..+.+..|+..|..|+.. -.. ...---++|.++.++..++..+|..|+.+|..+.. -++.-..|.-.-..|.|
T Consensus 436 ~~~tK~~ALeLl~~lS~~-i~d--e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L 512 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTY-IDD--EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL 512 (1431)
T ss_pred cchhHHHHHHHHHHHhhh-cch--HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence 567888999999999984 211 12223578999999999999999999999988753 12223334444567777
Q ss_pred HHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-------------------CCCC--hH------HHHhc-CcHHHH
Q 048113 128 VEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-------------------CHQL--IS------PIVSS-GVTYCL 179 (339)
Q Consensus 128 v~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-------------------~~~~--~~------~i~~~-g~i~~L 179 (339)
-.++.+. ...-++..-+..|..|+. ++++ .. ..-+. ..|+.+
T Consensus 513 ~~l~~d~----------~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~ 582 (1431)
T KOG1240|consen 513 NHLLNDS----------SAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQM 582 (1431)
T ss_pred HhhhccC----------ccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHH
Confidence 7777652 122222222222222111 1111 00 00000 123333
Q ss_pred HHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHH
Q 048113 180 LQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSIL 259 (339)
Q Consensus 180 v~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 259 (339)
+.-|-.++ ++-+++.-+..++ -||..- +|. ....=.++.|+..|.+.+...+..-..-+.-+|..-+. +-.
T Consensus 583 v~sLlsd~-~~~Vkr~Lle~i~-~LC~FF-Gk~--ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~----rs~ 653 (1431)
T KOG1240|consen 583 VSSLLSDS-PPIVKRALLESII-PLCVFF-GKE--KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW----RSV 653 (1431)
T ss_pred HHHHHcCC-chHHHHHHHHHHH-HHHHHh-hhc--ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee----eeH
Confidence 33332221 2233333334455 333221 111 11123568888888887665555444444444444222 224
Q ss_pred hcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH----hcCcccchHHHHHHHHHHHH
Q 048113 260 KEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID----AEGDTVAGTTLRLVEEMIAK 335 (339)
Q Consensus 260 ~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~a~~~l~~~v~~ 335 (339)
+++.+|.|.+-+.++.+.+..+|+.++..|.+.+.. ..-.+.+|++.+. --+.++|..+-.+++.+...
T Consensus 654 seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll-------~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 654 SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLL-------RKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhccc-------chHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 567888888889999999999999999999998763 2334444444443 34699999999999998887
Q ss_pred hcc
Q 048113 336 LST 338 (339)
Q Consensus 336 ~~~ 338 (339)
|.+
T Consensus 727 ls~ 729 (1431)
T KOG1240|consen 727 LSA 729 (1431)
T ss_pred hhh
Confidence 764
No 133
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.50 E-value=0.37 Score=39.73 Aligned_cols=93 Identities=14% Similarity=0.066 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHh
Q 048113 52 DYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEIL 131 (339)
Q Consensus 52 ~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll 131 (339)
++.+|.+++.+++-|+...+..-+ ..+|.+...|.++++.+|..|+.+|..|...+-.|. +...+..++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~---k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV---KGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee---hhhhhHHHHHHH
Confidence 578999999999999985443222 247889999999999999999999999987655443 122347788888
Q ss_pred cCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC
Q 048113 132 NGDLADDDNSYGRISVQAKIDAIATLHNLSTC 163 (339)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~ 163 (339)
.. .+++++..|..++..+...
T Consensus 73 ~D-----------~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VD-----------ENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cC-----------CCHHHHHHHHHHHHHHHHh
Confidence 77 7999999999999998765
No 134
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.49 E-value=0.39 Score=48.28 Aligned_cols=224 Identities=10% Similarity=0.057 Sum_probs=145.2
Q ss_pred cCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcC-CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHH
Q 048113 50 SQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQC-QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLV 128 (339)
Q Consensus 50 ~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv 128 (339)
+..|.....|.+++..++.....+...+-. .+...+..+.- ..+.++..|+++++..+......+ ...+.+..|.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~--~~p~ild~L~ 536 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLS--LQPMILDGLL 536 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhccCceeccc--cchHHHHHHH
Confidence 346666668888888777743333322211 12223333333 345567777777766553222221 1345677788
Q ss_pred HHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCH
Q 048113 129 EILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSE 208 (339)
Q Consensus 129 ~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~ 208 (339)
++... .+.++...-+.+|+..++.+.-.....+.-+.|.++.++-....++.+...+-.++. -++...
T Consensus 537 qlas~-----------~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~-el~q~~ 604 (1005)
T KOG2274|consen 537 QLASK-----------SSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFE-ELLQIA 604 (1005)
T ss_pred HHccc-----------ccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHH-HHHHHH
Confidence 88776 688899999999999998666666666777888888877655556677777777777 566655
Q ss_pred hhhHHHHhhCCcHHHHHHHhhcCC----hHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHh-hhcCCHHHHHHHH
Q 048113 209 DALQEIAATCGAIRALVETIEEGS----PQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQL-SVDGTWRAKNMAR 283 (339)
Q Consensus 209 ~~~~~i~~~~g~i~~Lv~lL~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~~~~~A~ 283 (339)
.+...+. +-.+|.+++.|..+. ......++.+|.-+.+..++..-..+ -.-+.|++.+. +++++...-..+.
T Consensus 605 ~~~g~m~--e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l-~~~~FpaVak~tlHsdD~~tlQ~~~ 681 (1005)
T KOG2274|consen 605 ANYGPMQ--ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLL-ICYAFPAVAKITLHSDDHETLQNAT 681 (1005)
T ss_pred HhhcchH--HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHH-HHHHhHHhHhheeecCChHHHHhHH
Confidence 5555554 368999999998754 55566677777666655444333332 23578888877 6777777788899
Q ss_pred HHHHHHhcc
Q 048113 284 DLLLLLRDC 292 (339)
Q Consensus 284 ~~L~~l~~~ 292 (339)
.+|+.+-..
T Consensus 682 EcLra~Is~ 690 (1005)
T KOG2274|consen 682 ECLRALISV 690 (1005)
T ss_pred HHHHHHHhc
Confidence 999877554
No 135
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.48 E-value=0.046 Score=47.48 Aligned_cols=98 Identities=13% Similarity=0.062 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhc-cCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhh
Q 048113 15 ETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLC-SQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVL 90 (339)
Q Consensus 15 ~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL 90 (339)
.....|++.|.-++-- .|..+.....+..++.+|+ ...+.++..++.+|..+-.+++.|...|-+.+|+..+++++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 3456677888777653 9999999999999999994 45789999999999888888999999999999999999999
Q ss_pred cCC--ChhHHHHHHHHHHHHhcCc
Q 048113 91 QCQ--STTLIELTVAAMLILSSCL 112 (339)
Q Consensus 91 ~~~--~~~~~~~a~~~L~nLs~~~ 112 (339)
++. +.+++..+...|+-...++
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHccc
Confidence 876 5678888888887665433
No 136
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.47 E-value=0.0062 Score=46.17 Aligned_cols=72 Identities=17% Similarity=0.143 Sum_probs=61.6
Q ss_pred cCChHHHHHHh-ccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHh
Q 048113 38 RGIIAPLISML-CSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILS 109 (339)
Q Consensus 38 ~g~i~~Lv~lL-~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs 109 (339)
-.++..|+++| .+.++.+...|+.-|+.++++.|..|..+-+.|+=..+..++.+++++++..|+.++..+.
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 34788899999 4558888899999999999988888888888899999999999999999999999987654
No 137
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.44 E-value=0.17 Score=50.55 Aligned_cols=168 Identities=10% Similarity=0.042 Sum_probs=117.0
Q ss_pred hcCCChhHHHHHH-HHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChH
Q 048113 90 LQCQSTTLIELTV-AAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLIS 168 (339)
Q Consensus 90 L~~~~~~~~~~a~-~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~ 168 (339)
+.+.+...+..|+ .++..++..++-.. ..+.+++.... .+.++++..-.=|.+.+...+...
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dmss------Lf~dViK~~~t-----------rd~ElKrL~ylYl~~yak~~P~~~ 90 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMSS------LFPDVIKNVAT-----------RDVELKRLLYLYLERYAKLKPELA 90 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChHH------HHHHHHHHHHh-----------cCHHHHHHHHHHHHHHhccCHHHH
Confidence 5666665555555 45566666655222 45666666665 788888877766666666433111
Q ss_pred HHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhc
Q 048113 169 PIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICK 248 (339)
Q Consensus 169 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 248 (339)
.+ ++..+.+=++++ ++.++--|++.++ .+-.. ++.. .+++++.+++.++++.++..|+.++..+-.
T Consensus 91 lL----avNti~kDl~d~--N~~iR~~AlR~ls-~l~~~-----el~~--~~~~~ik~~l~d~~ayVRk~Aalav~kly~ 156 (757)
T COG5096 91 LL----AVNTIQKDLQDP--NEEIRGFALRTLS-LLRVK-----ELLG--NIIDPIKKLLTDPHAYVRKTAALAVAKLYR 156 (757)
T ss_pred HH----HHHHHHhhccCC--CHHHHHHHHHHHH-hcChH-----HHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHHh
Confidence 11 345555666653 5788888888888 43222 3442 578889999999999999999999999876
Q ss_pred cCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhcc
Q 048113 249 SCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDC 292 (339)
Q Consensus 249 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 292 (339)
-+ +....+.|.+..+..++.+.+|.+..+|...|..+-..
T Consensus 157 ld----~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 157 LD----KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred cC----HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 53 25667788999999999999999999999998887543
No 138
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=96.42 E-value=0.55 Score=44.09 Aligned_cols=195 Identities=16% Similarity=0.152 Sum_probs=121.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhccCC---cchhhHHhhcCChHHHHHhhcCCC-------hhHHHHHHHHHHHHhcCc
Q 048113 43 PLISMLCSQDYEAIEAALLSLLSLACGS---ERNKIRIVKSGIVPVLLEVLQCQS-------TTLIELTVAAMLILSSCL 112 (339)
Q Consensus 43 ~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~---~~~~~~i~~~g~i~~Lv~lL~~~~-------~~~~~~a~~~L~nLs~~~ 112 (339)
.+..+++..+.+.+-.|+-.+..+.++. ..+|..+.++=|.+.+=+++.+.+ ...+..+...|.-+++.+
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 3566777778888999999999999853 346888999988898888886542 235667777777777766
Q ss_pred cc--hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCc
Q 048113 113 EN--KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSS 190 (339)
Q Consensus 113 ~~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~ 190 (339)
+- .+.+ -+.||.|..++....+.+ ...+..+...+..+|...+..+.+...++..|+++.+.++-.-++-+.
T Consensus 95 ElAsh~~~--v~~IP~llev~~~~~d~d----~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~ 168 (698)
T KOG2611|consen 95 ELASHEEM--VSRIPLLLEVMSKGIDTD----YEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSH 168 (698)
T ss_pred hhccCHHH--HHhhhHHHHHHHhcCCCc----hhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCch
Confidence 53 3333 246889999886631100 001233778899999999999999999999999999997754332111
Q ss_pred hHHHHHHHHHH---HhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhh
Q 048113 191 GLTEKAIALLE---NIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLIC 247 (339)
Q Consensus 191 ~~~~~a~~~L~---n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 247 (339)
+ ..-++.++- .-+...++.-..+.. .|..+-.-+.......+...+..|..+-
T Consensus 169 d-~alal~Vlll~~~~~~cw~e~~~~fla---li~~va~df~~~~~a~KfElc~lL~~vl 224 (698)
T KOG2611|consen 169 D-MALALKVLLLLVSKLDCWSETIERFLA---LIAAVARDFAVLHNALKFELCHLLSAVL 224 (698)
T ss_pred h-HHHHHHHHHHHHHhcccCcCCHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 1 222222222 111222333333322 2344444444445566777777776443
No 139
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=96.39 E-value=0.59 Score=42.99 Aligned_cols=285 Identities=16% Similarity=0.219 Sum_probs=152.0
Q ss_pred HHHHHHHcCCC-HHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHh--cc--------CCHHHHHHHHHHHHHhccC
Q 048113 3 EMLMDNLLNGE-RETQIQAANELGKLSRR--QKHKLVERGIIAPLISML--CS--------QDYEAIEAALLSLLSLACG 69 (339)
Q Consensus 3 ~~Lv~~L~s~~-~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL--~~--------~~~~~~~~A~~~L~~Ls~~ 69 (339)
+.+++.|..+. +.-+..-+..++.++++ .-..+.....+..|+.+. ++ .+.++...|+++|+|+..+
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 34566666555 34455666667767664 222222222233333332 11 1458899999999999998
Q ss_pred CcchhhHHhhcCChHHHHHhhcCC-----ChhHHHHHHHHHHHHhcCc-cch-HHHHhcchHHHHHHHhcCCCCCCCC--
Q 048113 70 SERNKIRIVKSGIVPVLLEVLQCQ-----STTLIELTVAAMLILSSCL-ENK-LEIASSGAIQRLVEILNGDLADDDN-- 140 (339)
Q Consensus 70 ~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~nLs~~~-~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~-- 140 (339)
++..+..+.+......+++.+... ...+...-++.|.-|..-+ ..| +.+++.+|++.+.+++..+.+.+.+
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n 207 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEIN 207 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcC
Confidence 888888888887776666654321 2345666667777776433 334 4456889999999999876433321
Q ss_pred --ccCCCCHHHHHHHHHHHHhhcCCC-CChH--HHH---hc-CcHHHHHHHhhcccc-----------CchHHHHHHHHH
Q 048113 141 --SYGRISVQAKIDAIATLHNLSTCH-QLIS--PIV---SS-GVTYCLLQLIHSSEK-----------SSGLTEKAIALL 200 (339)
Q Consensus 141 --~~~~~~~~~~~~a~~~L~nLs~~~-~~~~--~i~---~~-g~i~~Lv~ll~~~~~-----------~~~~~~~a~~~L 200 (339)
...+........++.++.|+..+. .... .-. -. +.....+..+..... -+.+...++.++
T Consensus 208 ~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~elhshav~~L~nv~~k~~~~~ 287 (532)
T KOG4464|consen 208 VPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEELHSHAVNLLDNVPEKCLDVL 287 (532)
T ss_pred CCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHHhhccCCccCCchhhhhhcc
Confidence 123344556667888888986532 2211 111 11 222222222211110 133455666665
Q ss_pred HHhhcCCHhhhHH-HHhhCCc-HHHHHHHhhcC---------ChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHH
Q 048113 201 ENIVSSSEDALQE-IAATCGA-IRALVETIEEG---------SPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQ 269 (339)
Q Consensus 201 ~n~l~~~~~~~~~-i~~~~g~-i~~Lv~lL~~~---------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ 269 (339)
. .....++..+ +....|. ...+..+|... ..+.......+|..+|..+.. . .......++|+|..
T Consensus 288 ~--~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~R~-~-Rkylr~qVLPPLrD 363 (532)
T KOG4464|consen 288 A--GAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSHRV-M-RKYLRQQVLPPLRD 363 (532)
T ss_pred c--CCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhhHH-H-HHHHHHhcCCchhh
Confidence 5 1222222222 2111232 22333333221 122333456777777776433 3 44555668998876
Q ss_pred hhhc-----------------CCHHHHHHHHHHHHHHhc
Q 048113 270 LSVD-----------------GTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 270 ll~~-----------------~~~~~~~~A~~~L~~l~~ 291 (339)
.-+. .+..++.-|+..|.-|++
T Consensus 364 V~~RPEvg~tLRnkl~Rlmtl~~~~~K~vaAEfLFvLCK 402 (532)
T KOG4464|consen 364 VSQRPEVGQTLRNKLVRLMTLPDSSVKDVAAEFLFVLCK 402 (532)
T ss_pred hhcCcchhHHHHHhhHhheeccchhhhhhhHHHHHHHhh
Confidence 5544 234456666666666654
No 140
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.33 Score=48.05 Aligned_cols=257 Identities=14% Similarity=0.090 Sum_probs=129.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcch--------h
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERN--------K 74 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~--------~ 74 (339)
+.+-++|.+..+.+..+|++++.++...+.+.+.. .+..|--++++..+.+|-.|.++|..+|...|.. -
T Consensus 248 ~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE 325 (865)
T KOG1078|consen 248 PFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLE 325 (865)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHH
Confidence 34556777889999999999998887653222222 7777778899999999999999999998743321 1
Q ss_pred hHHhhc---CChHHHHHhhcCCChhHHHHHHHHHHHHhc--CccchHHH----H---------hcchHHHHHHHhcCCCC
Q 048113 75 IRIVKS---GIVPVLLEVLQCQSTTLIELTVAAMLILSS--CLENKLEI----A---------SSGAIQRLVEILNGDLA 136 (339)
Q Consensus 75 ~~i~~~---g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~--~~~~~~~i----~---------~~g~i~~Lv~ll~~~~~ 136 (339)
..+-+. -..+++-.+|..++..-...-...+.+..+ +++.|-.+ . ..+.+.-|-.+|+++
T Consensus 326 ~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~e-- 403 (865)
T KOG1078|consen 326 SLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREE-- 403 (865)
T ss_pred hhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhc--
Confidence 111111 123334444444443333322233322221 11222111 0 112233333333332
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHH
Q 048113 137 DDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIA 215 (339)
Q Consensus 137 ~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~ 215 (339)
+..+.+.....++..... +++.|.. +...|..++.++ +....+..+|+ .+-.... ....
T Consensus 404 --------Gg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDc----e~~~i~~rILh-lLG~EgP--~a~~ 463 (865)
T KOG1078|consen 404 --------GGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDC----EFTQIAVRILH-LLGKEGP--KAPN 463 (865)
T ss_pred --------cCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhc----cchHHHHHHHH-HHhccCC--CCCC
Confidence 333444444444443332 3332222 123344444432 11222333333 2211100 0000
Q ss_pred hhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHh
Q 048113 216 ATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLR 290 (339)
Q Consensus 216 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~ 290 (339)
. ...+..+-..+-=.+..++-.|+.+|.++...++. .++ .+...|.+.+.+.+..++++|.-.|.++.
T Consensus 464 P-skyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~-l~~-----sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 464 P-SKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVV-LLP-----SILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred c-chhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC-ccc-----cHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 0 12333333333334566778888999988854322 222 23334555688889999999999999987
No 141
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=96.32 E-value=0.15 Score=48.47 Aligned_cols=178 Identities=13% Similarity=0.120 Sum_probs=116.7
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113 83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST 162 (339)
Q Consensus 83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~ 162 (339)
...+...+.+++...+..+...|..++.+......++...++..|.+++.+... ....+.....+.++..+-.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~-------~~~~~~L~~~L~af~elme 157 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRV-------CMSSELLSTSLRAFSELME 157 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCcc-------chHHHHHHHHHHHHHHHHh
Confidence 456788888888888888999999999888888888899999999999988420 0134555566666665532
Q ss_pred CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHh-hhHHHHhhCCcHHHHHHHhhcCChHHHHHHHH
Q 048113 163 CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSED-ALQEIAATCGAIRALVETIEEGSPQCKEHAVA 241 (339)
Q Consensus 163 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~ 241 (339)
..-.-=..+...+|.....+..-.-.+..+...|++.|- .+..+.. -+..+.+ .--++.|+.+++..+..++..|..
T Consensus 158 hgvvsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE-~~vl~s~~~~~~v~e-ev~i~~li~hlq~~n~~i~~~aia 235 (713)
T KOG2999|consen 158 HGVVSWESVSNDFVVSMASYVNAKREDANTLLAALQMLE-SLVLGSDTLRQLVAE-EVPIETLIRHLQVSNQRIQTCAIA 235 (713)
T ss_pred hceeeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHH-HHHhCChHHHHHHHh-cCcHHHHHHHHHhcchHHHHHHHH
Confidence 221111122233444444444322224667888999999 5555544 4444544 778999999999999999988888
Q ss_pred HHHHhhccCchhHHHHHHhcCChHHHHH
Q 048113 242 ILLLICKSCRDKYRSSILKEGVMPGLLQ 269 (339)
Q Consensus 242 ~L~~l~~~~~~~~~~~~~~~g~i~~L~~ 269 (339)
.+-.+....++.-|..+.+.-....+..
T Consensus 236 l~nal~~~a~~~~R~~~~~~l~~~~~R~ 263 (713)
T KOG2999|consen 236 LLNALFRKAPDDKRFEMAKSLEQKQFRN 263 (713)
T ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHH
Confidence 7777765555544555555433333433
No 142
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=96.32 E-value=0.67 Score=43.55 Aligned_cols=128 Identities=15% Similarity=0.171 Sum_probs=100.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHH------HHHHHHhcCChHHHHHHhccC-------CHHHHHHHHHHHHHhccCCc
Q 048113 5 LMDNLLNGERETQIQAANELGKLSRR------QKHKLVERGIIAPLISMLCSQ-------DYEAIEAALLSLLSLACGSE 71 (339)
Q Consensus 5 Lv~~L~s~~~~~~~~a~~~L~~l~~~------~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~A~~~L~~Ls~~~~ 71 (339)
+..++...+.+.|..|+-....+.++ +|+.+.+.-+.+-+-++|.+. +...+..++..|..+|. .|
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~-~p 94 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR-VP 94 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC-Ch
Confidence 44566677888999999999998875 888899998999988888764 33567778888999988 56
Q ss_pred chhhHHhhcCChHHHHHhhcCC-Chh------HHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcC
Q 048113 72 RNKIRIVKSGIVPVLLEVLQCQ-STT------LIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNG 133 (339)
Q Consensus 72 ~~~~~i~~~g~i~~Lv~lL~~~-~~~------~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~ 133 (339)
+-...=--.+.||.|..++... +++ ..+.+..+|...+..+.+...++..|+++.+.++-.-
T Consensus 95 ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~ 163 (698)
T KOG2611|consen 95 ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYEL 163 (698)
T ss_pred hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhC
Confidence 5433322335789999988764 322 6788999999999999999999999999999987654
No 143
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.30 E-value=0.014 Score=44.27 Aligned_cols=66 Identities=20% Similarity=0.301 Sum_probs=55.7
Q ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 048113 3 EMLMDNL-LNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLAC 68 (339)
Q Consensus 3 ~~Lv~~L-~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~ 68 (339)
+.|+.+| .+.|+....-|+.-|+.+.+. .|..+.+.|+=..+.+++.+++++++..|+.++..+-.
T Consensus 46 k~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 46 KKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4688888 466888888899999999997 77777789999999999999999999999999876643
No 144
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.29 E-value=0.24 Score=44.54 Aligned_cols=171 Identities=12% Similarity=0.063 Sum_probs=111.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcc-hhh-------
Q 048113 4 MLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSER-NKI------- 75 (339)
Q Consensus 4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~-~~~------- 75 (339)
.++.-+++.++.+|..|+++|+-.+--.++.. ...++.+...++.+++.++..|++++.-+..-.+. .-.
T Consensus 31 lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a--~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~ 108 (298)
T PF12719_consen 31 LILPAVQSSDPAVRELALKCLGLCCLLDKELA--KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDE 108 (298)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCc
Confidence 34456678999999999999998886422221 22355677777778999999999999877652221 111
Q ss_pred HHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHH
Q 048113 76 RIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIA 155 (339)
Q Consensus 76 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~ 155 (339)
.......+..+...+.+.+++++..|+..++.|-....... ....+..|+-+.-++.. .++...+..-..
T Consensus 109 ~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t-------~~~~~LrQ~L~~ 178 (298)
T PF12719_consen 109 SVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPST-------EDNQRLRQCLSV 178 (298)
T ss_pred cchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCccc-------CCcHHHHHHHHH
Confidence 11223567788888888999999999999999876443322 13456666655544321 134555555555
Q ss_pred HHHhhcCCCCChHHHHhcCcHHHHHHHhhcc
Q 048113 156 TLHNLSTCHQLISPIVSSGVTYCLLQLIHSS 186 (339)
Q Consensus 156 ~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~ 186 (339)
.+-..+......+..+...+++.+-.+...+
T Consensus 179 Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 179 FFPVYASSSPENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 5566677655445555666777777776654
No 145
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.28 E-value=0.052 Score=46.96 Aligned_cols=190 Identities=18% Similarity=0.113 Sum_probs=129.4
Q ss_pred CHHHHHHHHHHHHHHHHH--HHHHH--HhcCChHHHHH-Hhcc------C--CH---HHHHHHHHHHHHhccCCcchhhH
Q 048113 13 ERETQIQAANELGKLSRR--QKHKL--VERGIIAPLIS-MLCS------Q--DY---EAIEAALLSLLSLACGSERNKIR 76 (339)
Q Consensus 13 ~~~~~~~a~~~L~~l~~~--~~~~i--~~~g~i~~Lv~-lL~~------~--~~---~~~~~A~~~L~~Ls~~~~~~~~~ 76 (339)
+++.|..|+..|+.--+. .-..+ ..-|.+..|++ ..+- + ++ .-..+|+..|..++. +|+.|..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence 677788887766553222 22222 23677766654 2221 1 11 334567778888888 6999999
Q ss_pred HhhcCChHHHHHhhcCCC-----hhHHHHHHHHHHHHhcCcc--chHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHH
Q 048113 77 IVKSGIVPVLLEVLQCQS-----TTLIELTVAAMLILSSCLE--NKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQA 149 (339)
Q Consensus 77 i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~ 149 (339)
+.++...-.|-++|+..+ +.+|...++.++.|...++ .-..+...+.+|..++.+.. ++.-.
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~-----------GselS 155 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEF-----------GSELS 155 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHH-----------S-HHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHh-----------ccHHH
Confidence 999999888888886543 4578889999999986443 23445588999999999998 78888
Q ss_pred HHHHHHHHHhhcCCCCChHHHHhc-C-------cHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHh
Q 048113 150 KIDAIATLHNLSTCHQLISPIVSS-G-------VTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAA 216 (339)
Q Consensus 150 ~~~a~~~L~nLs~~~~~~~~i~~~-g-------~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~ 216 (339)
+..|.-.+..+-.++.+-..+++. . ++..++.-+... +++.+.++.+++.. -++.++..+..+.+
T Consensus 156 KtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~-pS~RLLKhIIrCYl-RLsdnprar~aL~~ 228 (262)
T PF04078_consen 156 KTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQ-PSPRLLKHIIRCYL-RLSDNPRAREALRQ 228 (262)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS---HHHHHHHHHHHH-HHTTSTTHHHHHHH
T ss_pred HHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccC-CChhHHHHHHHHHH-HHccCHHHHHHHHH
Confidence 999999999887777766665553 2 344444444433 36888999999888 78999998888764
No 146
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.27 E-value=0.057 Score=39.67 Aligned_cols=67 Identities=22% Similarity=0.271 Sum_probs=53.6
Q ss_pred CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHh--cCChHHHHHhhhcCCHHHHHHHHHHHHHH
Q 048113 219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILK--EGVMPGLLQLSVDGTWRAKNMARDLLLLL 289 (339)
Q Consensus 219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~A~~~L~~l 289 (339)
..+++++..+.+.+.+++..|+.+|.+++... +..+.. ..+.+.|.+++.+.++.+|..|..+-+.|
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~----~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVA----RGEILPYFNEIFDALCKLSADPDENVRSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh
Confidence 57899999999999999999999999998653 344443 56888999999999999987775444443
No 147
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.26 E-value=0.23 Score=45.31 Aligned_cols=208 Identities=10% Similarity=0.065 Sum_probs=147.8
Q ss_pred hHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc-cchH--H--HHhcchHHHHHHHhcCCCCCCCCccCCCCHHH
Q 048113 75 IRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL-ENKL--E--IASSGAIQRLVEILNGDLADDDNSYGRISVQA 149 (339)
Q Consensus 75 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~--~--i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~ 149 (339)
..+...|.++.|+..|..-+-+.+..++.+..++.... +.+. . ......-+.+..++... +++++
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy----------~~~di 139 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY----------ENPDI 139 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG----------GSTTT
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh----------cCccc
Confidence 35666789999999999999999999999998887533 2222 1 11111122223333443 56667
Q ss_pred HHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhh--CCcHHHHHHH
Q 048113 150 KIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAAT--CGAIRALVET 227 (339)
Q Consensus 150 ~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~--~g~i~~Lv~l 227 (339)
...+-..|+..++.+...+.+.....+..+.+.++.+ .-++...|..++...+..++......... ..++.....+
T Consensus 140 al~~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~--~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~L 217 (335)
T PF08569_consen 140 ALNCGDMLRECIKHESLAKIILYSECFWKFFKYVQLP--NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKL 217 (335)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSS--SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCC--ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888888888888899999998874 58899999999998888888776666541 2456777889
Q ss_pred hhcCChHHHHHHHHHHHHhhccCch-hHHHHHHh-cCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCC
Q 048113 228 IEEGSPQCKEHAVAILLLICKSCRD-KYRSSILK-EGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSS 294 (339)
Q Consensus 228 L~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 294 (339)
|.+++=-++..++..|..+-.+... ......+. ..-+..++.++++.+..+|..|-.+..-+..++.
T Consensus 218 l~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 218 LESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred ccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence 9998888899999999998765433 12222232 3467778888999999999999999999988764
No 148
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.21 E-value=0.6 Score=43.23 Aligned_cols=219 Identities=17% Similarity=0.165 Sum_probs=128.1
Q ss_pred hHHHHHHhc-cCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcC-CChhHHHHHHHHHHHH-hcCccchHH
Q 048113 41 IAPLISMLC-SQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQC-QSTTLIELTVAAMLIL-SSCLENKLE 117 (339)
Q Consensus 41 i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nL-s~~~~~~~~ 117 (339)
|..+++=+. +.+..+|..++-.|+.-+. ++..+..+..+|.+..+++.+.. ++......++.+++.+ +.+..+-..
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 344444444 3456789999988988888 79999999999999999999944 4443555554555444 444444444
Q ss_pred HHhcchHHHHHHHhcC--C---CCCCCCc----------------------------cCCCCHHHHHHHHHHHHhhc---
Q 048113 118 IASSGAIQRLVEILNG--D---LADDDNS----------------------------YGRISVQAKIDAIATLHNLS--- 161 (339)
Q Consensus 118 i~~~g~i~~Lv~ll~~--~---~~~~~~~----------------------------~~~~~~~~~~~a~~~L~nLs--- 161 (339)
+.+.+....+++++.- . ..+.+.. .......-+..|..++-.++
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~~ 181 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRSL 181 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHHH
Confidence 4455666666777761 1 0111100 00112223334444444442
Q ss_pred -----------C-CCCChHHHHhcCcHHHHHHHhhc----cc-----c-----CchHHHHHHHHHHHhhcCCHhhhHHHH
Q 048113 162 -----------T-CHQLISPIVSSGVTYCLLQLIHS----SE-----K-----SSGLTEKAIALLENIVSSSEDALQEIA 215 (339)
Q Consensus 162 -----------~-~~~~~~~i~~~g~i~~Lv~ll~~----~~-----~-----~~~~~~~a~~~L~n~l~~~~~~~~~i~ 215 (339)
. .+..++.+...|+++.++..+.+ .. + +......|+.+|-|.....+++...+.
T Consensus 182 ~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~ 261 (361)
T PF07814_consen 182 REAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYLL 261 (361)
T ss_pred hhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHHH
Confidence 1 12336677788999999999863 10 0 122456788888865555666666665
Q ss_pred hhC-CcHHHHH-HHhhc---CChHHHHHHHHHHHHhhccCchhHHHHHHhc
Q 048113 216 ATC-GAIRALV-ETIEE---GSPQCKEHAVAILLLICKSCRDKYRSSILKE 261 (339)
Q Consensus 216 ~~~-g~i~~Lv-~lL~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 261 (339)
... +.++.+. .++.. ........++..+.|++.+++. .++.+...
T Consensus 262 ~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~-~c~~~~s~ 311 (361)
T PF07814_consen 262 SHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPS-ACEEFASP 311 (361)
T ss_pred HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCcc-chHhhhhh
Confidence 422 2233332 23332 2344567889999999987754 45555544
No 149
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.21 E-value=0.5 Score=45.81 Aligned_cols=180 Identities=14% Similarity=0.165 Sum_probs=100.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhh
Q 048113 11 NGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVL 90 (339)
Q Consensus 11 s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL 90 (339)
.++..++.-|+..|....+.... ....++..++.++.+++..+|..|.+.|-.+|+++++....++ ..|+++|
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~--l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kva-----DvL~QlL 105 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPD--LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVA-----DVLVQLL 105 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GG--GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHH-----HHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHH-----HHHHHHH
Confidence 46777777788877776654000 1244678899999999999999999999999997777766664 5699999
Q ss_pred cCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcC-CCCCCCCccCCCCHHHHHHHHHHHHhhcC--CCCCh
Q 048113 91 QCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNG-DLADDDNSYGRISVQAKIDAIATLHNLST--CHQLI 167 (339)
Q Consensus 91 ~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~~~~~~~~~~~~a~~~L~nLs~--~~~~~ 167 (339)
.++++.-...+-.+|..|...++ .+.+..+.+.+.. ++ ++..+|+.++..|..=-. ..+.-
T Consensus 106 ~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~---------~de~~Re~~lkFl~~kl~~l~~~~~ 169 (556)
T PF05918_consen 106 QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKS---------GDEQVRERALKFLREKLKPLKPELL 169 (556)
T ss_dssp T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---H---------S-HHHHHHHHHHHHHHGGGS-TTTS
T ss_pred hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhccc---------CchHHHHHHHHHHHHHHhhCcHHHh
Confidence 98887766666677766654333 2345556665541 11 677889998888864221 11111
Q ss_pred H--HHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcC-----CHhhhHHHHh
Q 048113 168 S--PIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSS-----SEDALQEIAA 216 (339)
Q Consensus 168 ~--~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~-----~~~~~~~i~~ 216 (339)
. .=.+.=++..+-+.|.+- ...-......+|. .+.. ...++..+++
T Consensus 170 ~p~~E~e~~i~~~ikkvL~DV--TaeEF~l~m~lL~-~lk~~~~~~t~~g~qeLv~ 222 (556)
T PF05918_consen 170 TPQKEMEEFIVDEIKKVLQDV--TAEEFELFMSLLK-SLKIYGGKQTIEGRQELVD 222 (556)
T ss_dssp ---HHHHHHHHHHHHHHCTT----HHHHHHHHHHHH-TSGG---GSSHHHHHHHHH
T ss_pred hchHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHH-hCccccccCChHHHHHHHH
Confidence 1 112222344555666552 1233444555555 4433 4455555543
No 150
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.16 E-value=0.077 Score=46.13 Aligned_cols=100 Identities=13% Similarity=0.161 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcC-CChhHHHHHHHHHHHHh-cCccchHHHHhcchHHHHHHHh
Q 048113 54 EAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQC-QSTTLIELTVAAMLILS-SCLENKLEIASSGAIQRLVEIL 131 (339)
Q Consensus 54 ~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~ll 131 (339)
.....|++.|..++--+|..|..+.+..++..|+++|.. .++.++..++.+|..+. .+++|...+-+.+|+..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 356678899999998889999999999999999999954 46788989998887766 5666777777899999999999
Q ss_pred cCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113 132 NGDLADDDNSYGRISVQAKIDAIATLHNLST 162 (339)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~ 162 (339)
++.. .+.+++...+..|+-...
T Consensus 186 k~~~---------~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 186 KSKS---------TDRELRLKCIEFLYFYLM 207 (257)
T ss_pred cccc---------ccHHHhHHHHHHHHHHHc
Confidence 9853 577888888888775543
No 151
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.07 E-value=0.16 Score=50.74 Aligned_cols=164 Identities=15% Similarity=0.103 Sum_probs=111.8
Q ss_pred HcCCCHHHHHHHHHHHHH-HHHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHH
Q 048113 9 LLNGERETQIQAANELGK-LSRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVL 86 (339)
Q Consensus 9 L~s~~~~~~~~a~~~L~~-l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~L 86 (339)
|.+++...|..|.+.+-. .+.+ . =.-..+.+++...+.|.+++.-----|.+.+..+|+-. .+ ++..+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-----mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~-lL----avNti 97 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-----MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA-LL----AVNTI 97 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH-HH----HHHHH
Confidence 345566777777766532 2222 1 01234455666667788888888778888888655221 11 45667
Q ss_pred HHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCC
Q 048113 87 LEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQL 166 (339)
Q Consensus 87 v~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~ 166 (339)
.+=++++++.+|..|++++..+=..+- -...++++.+.+.+ .++.+|..|+-++.++=. -.
T Consensus 98 ~kDl~d~N~~iR~~AlR~ls~l~~~el------~~~~~~~ik~~l~d-----------~~ayVRk~Aalav~kly~--ld 158 (757)
T COG5096 98 QKDLQDPNEEIRGFALRTLSLLRVKEL------LGNIIDPIKKLLTD-----------PHAYVRKTAALAVAKLYR--LD 158 (757)
T ss_pred HhhccCCCHHHHHHHHHHHHhcChHHH------HHHHHHHHHHHccC-----------CcHHHHHHHHHHHHHHHh--cC
Confidence 777888999999999998866533111 13368888888888 789999999999988732 23
Q ss_pred hHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhh
Q 048113 167 ISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIV 204 (339)
Q Consensus 167 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l 204 (339)
+...-+.|.+..+..++.+. ++.+..+|+.+|. .+
T Consensus 159 ~~l~~~~g~~~~l~~l~~D~--dP~Vi~nAl~sl~-~i 193 (757)
T COG5096 159 KDLYHELGLIDILKELVADS--DPIVIANALASLA-EI 193 (757)
T ss_pred HhhhhcccHHHHHHHHhhCC--CchHHHHHHHHHH-Hh
Confidence 34455668888888888774 5788889998888 44
No 152
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=96.01 E-value=0.1 Score=43.22 Aligned_cols=104 Identities=15% Similarity=0.194 Sum_probs=73.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhcc---------CCHHHHHHHHHHHHHhccC
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCS---------QDYEAIEAALLSLLSLACG 69 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~---------~~~~~~~~A~~~L~~Ls~~ 69 (339)
+.++..|.+..... +.+..|+...+. --+.|++.||+..|+..|.. .+.......++++..+..
T Consensus 69 ~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n- 145 (187)
T PF06371_consen 69 EWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN- 145 (187)
T ss_dssp HHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc-
Confidence 35667776655443 333333333333 34566788999999998764 245788899999999999
Q ss_pred CcchhhHHhh-cCChHHHHHhhcCCChhHHHHHHHHHHHHh
Q 048113 70 SERNKIRIVK-SGIVPVLLEVLQCQSTTLIELTVAAMLILS 109 (339)
Q Consensus 70 ~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs 109 (339)
++.+...+.. .+++..|+..|.+++..++..++.+|..++
T Consensus 146 ~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 146 TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 6777777776 588999999999999999999999988765
No 153
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=1.1 Score=46.15 Aligned_cols=255 Identities=18% Similarity=0.157 Sum_probs=143.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQ-DYEAIEAALLSLLSLACGSERNKIRIVKSG 81 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g 81 (339)
+.|.+.|++.|-.+|-.|++.+..++.... .-....+|...++++.-. ++..-..|+-+|+.|+.. .--.-.. =..
T Consensus 344 e~Lls~l~d~dt~VrWSaAKg~grvt~rlp-~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~r-GlLlps~-l~d 420 (1133)
T KOG1943|consen 344 EHLLSALSDTDTVVRWSAAKGLGRVTSRLP-PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALR-GLLLPSL-LED 420 (1133)
T ss_pred HHHHHhccCCcchhhHHHHHHHHHHHccCc-HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc-CCcchHH-HHH
Confidence 355666677888999999999999987511 112233455555544432 455666888888888883 1111000 014
Q ss_pred ChHHHHHhhcCC--------ChhHHHHHHHHHHHHhcCcc-c--hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHH
Q 048113 82 IVPVLLEVLQCQ--------STTLIELTVAAMLILSSCLE-N--KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAK 150 (339)
Q Consensus 82 ~i~~Lv~lL~~~--------~~~~~~~a~~~L~nLs~~~~-~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~ 150 (339)
++|.+++-|..+ ...+|..|+..+|.++.... . +. +...=.-..|...+-+ ....+|
T Consensus 421 VvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~~L~s~LL~~AlFD-----------revncR 488 (1133)
T KOG1943|consen 421 VVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQSLASALLIVALFD-----------REVNCR 488 (1133)
T ss_pred HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHHHHHHHHHHHHhcC-----------chhhHh
Confidence 567777666433 24589999999999986332 2 22 2111111222233333 578899
Q ss_pred HHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHH-hh
Q 048113 151 IDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVET-IE 229 (339)
Q Consensus 151 ~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~l-L~ 229 (339)
..|..++.....-..|.. .+++ |+...... +-..+.+|...++..++..+.-+..+. ..|+.. +.
T Consensus 489 RAAsAAlqE~VGR~~n~p-----~Gi~-Lis~~dy~--sV~~rsNcy~~l~~~ia~~~~y~~~~f------~~L~t~Kv~ 554 (1133)
T KOG1943|consen 489 RAASAALQENVGRQGNFP-----HGIS-LISTIDYF--SVTNRSNCYLDLCVSIAEFSGYREPVF------NHLLTKKVC 554 (1133)
T ss_pred HHHHHHHHHHhccCCCCC-----Cchh-hhhhcchh--hhhhhhhHHHHHhHHHHhhhhHHHHHH------HHHHhcccc
Confidence 999999987654322221 1111 11122211 234455666666633333333332222 233332 45
Q ss_pred cCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHH----HHHHHHHHHHhc
Q 048113 230 EGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAK----NMARDLLLLLRD 291 (339)
Q Consensus 230 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~----~~A~~~L~~l~~ 291 (339)
+-++.+++.++++|.+|+... ......+.+|+|+....+.+...+ ..+..++..+..
T Consensus 555 HWd~~irelaa~aL~~Ls~~~-----pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~ 615 (1133)
T KOG1943|consen 555 HWDVKIRELAAYALHKLSLTE-----PKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRK 615 (1133)
T ss_pred cccHHHHHHHHHHHHHHHHhh-----HHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhh
Confidence 668999999999999987552 334566788888888777776654 333334444443
No 154
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.92 E-value=0.31 Score=46.40 Aligned_cols=155 Identities=17% Similarity=0.135 Sum_probs=115.2
Q ss_pred hHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhcccc--CchHHHHHHHHH
Q 048113 123 AIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEK--SSGLTEKAIALL 200 (339)
Q Consensus 123 ~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~--~~~~~~~a~~~L 200 (339)
....+..++.+ ++...+..|...|..++.++.....+....++..|.+++.++.. ...+...++.++
T Consensus 84 ~a~~i~e~l~~-----------~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af 152 (713)
T KOG2999|consen 84 YAKRIMEILTE-----------GNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAF 152 (713)
T ss_pred HHHHHHHHHhC-----------CCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHH
Confidence 45677888888 67777777999999999999999999999999999999988644 456777777777
Q ss_pred HHhhcCCHhhhHHHHhhCCcHHHHHHHhhc--CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHH
Q 048113 201 ENIVSSSEDALQEIAATCGAIRALVETIEE--GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRA 278 (339)
Q Consensus 201 ~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~ 278 (339)
. .+-.+....-..+. ..+|.....+..- -...+-..|+..|-++...+.. .+..+.++--+..|+..+..++..+
T Consensus 153 ~-elmehgvvsW~~~~-~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~-~~~~v~eev~i~~li~hlq~~n~~i 229 (713)
T KOG2999|consen 153 S-ELMEHGVVSWESVS-NDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDT-LRQLVAEEVPIETLIRHLQVSNQRI 229 (713)
T ss_pred H-HHHhhceeeeeecc-cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChH-HHHHHHhcCcHHHHHHHHHhcchHH
Confidence 7 33333222222222 3456666665532 2345667888999888877654 5677778889999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 048113 279 KNMARDLLLLLRD 291 (339)
Q Consensus 279 ~~~A~~~L~~l~~ 291 (339)
+..|...+..+..
T Consensus 230 ~~~aial~nal~~ 242 (713)
T KOG2999|consen 230 QTCAIALLNALFR 242 (713)
T ss_pred HHHHHHHHHHHHh
Confidence 9999888865544
No 155
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=1.7 Score=43.10 Aligned_cols=207 Identities=13% Similarity=0.119 Sum_probs=106.8
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHH
Q 048113 7 DNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVL 86 (339)
Q Consensus 7 ~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~L 86 (339)
.-|+++|+.+|-..++.|+.+-.. =.=...+|.+...|.+.++-+|++|.-++..+-+..+. . -.++-+.+
T Consensus 106 kDLQHPNEyiRG~TLRFLckLkE~----ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~---L--~pDapeLi 176 (948)
T KOG1058|consen 106 KDLQHPNEYIRGSTLRFLCKLKEP----ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH---L--IPDAPELI 176 (948)
T ss_pred hhccCchHhhcchhhhhhhhcCcH----HHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh---h--cCChHHHH
Confidence 446788888888888887776432 01123456666777777777777777666655552000 0 01222222
Q ss_pred HHhhcC-CChhHHHHHH----------------------------------HHHHHHhcCccchHHHHhcchHHHHHHHh
Q 048113 87 LEVLQC-QSTTLIELTV----------------------------------AAMLILSSCLENKLEIASSGAIQRLVEIL 131 (339)
Q Consensus 87 v~lL~~-~~~~~~~~a~----------------------------------~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll 131 (339)
-..|.. .++..+.+|. ..+...+...+.. +...|+.+..+|
T Consensus 177 ~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~----~~~~i~~i~~lL 252 (948)
T KOG1058|consen 177 ESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAE----KARYIRCIYNLL 252 (948)
T ss_pred HHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHH----hhHHHHHHHHHH
Confidence 223322 2333333332 2222222111110 133577777788
Q ss_pred cCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhh
Q 048113 132 NGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDAL 211 (339)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~ 211 (339)
.+ .++.++-.|+.+|.+|+.++...+.- ...+++++.+-+ +..+....+.-|. -+. ...
T Consensus 253 ~s-----------tssaV~fEaa~tlv~lS~~p~alk~A-----a~~~i~l~~kes-dnnvklIvldrl~-~l~---~~~ 311 (948)
T KOG1058|consen 253 SS-----------TSSAVIFEAAGTLVTLSNDPTALKAA-----ASTYIDLLVKES-DNNVKLIVLDRLS-ELK---ALH 311 (948)
T ss_pred hc-----------CCchhhhhhcceEEEccCCHHHHHHH-----HHHHHHHHHhcc-CcchhhhhHHHHH-HHh---hhh
Confidence 77 56677777777777776666543332 223444443321 2233333332222 122 222
Q ss_pred HHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhcc
Q 048113 212 QEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKS 249 (339)
Q Consensus 212 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 249 (339)
+.+.+ |.+..+++.|.+++-+++..++.....|...
T Consensus 312 ~~il~--~l~mDvLrvLss~dldvr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 312 EKILQ--GLIMDVLRVLSSPDLDVRSKTLDIALDLVSS 347 (948)
T ss_pred HHHHH--HHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence 23332 5667777777777777777777776666543
No 156
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.85 E-value=0.12 Score=51.16 Aligned_cols=219 Identities=16% Similarity=0.122 Sum_probs=143.7
Q ss_pred HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHH-HhccCCcchhhHHhhcCChHHHHHhhcCCCh-hHHHHHHHHHHHH
Q 048113 31 QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLL-SLACGSERNKIRIVKSGIVPVLLEVLQCQST-TLIELTVAAMLIL 108 (339)
Q Consensus 31 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~-~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~nL 108 (339)
-|...++.|+...|+.+.....++.+..+.++|. .++. +..+ ...+++++...+.+... .-...++.++.||
T Consensus 496 ~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f--~~~~----~~~v~~~~~s~~~~d~~~~en~E~L~altnL 569 (748)
T KOG4151|consen 496 ERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF--PGER----SYEVVKPLDSALHNDEKGLENFEALEALTNL 569 (748)
T ss_pred hcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC--CCCc----hhhhhhhhcchhhhhHHHHHHHHHHHHhhcc
Confidence 5566778999999999988888888888888887 3333 2222 22455666555554432 2356788999999
Q ss_pred hcCcc-chHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCCh-HHHHhc-CcHHHHHHHhhc
Q 048113 109 SSCLE-NKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLI-SPIVSS-GVTYCLLQLIHS 185 (339)
Q Consensus 109 s~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~-~~i~~~-g~i~~Lv~ll~~ 185 (339)
++.++ .|+.|.+.-+++.+-.++-. +++..+..++..+.||...+..- ..+++. ...+.....+..
T Consensus 570 as~s~s~r~~i~ke~~~~~ie~~~~e-----------e~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~ 638 (748)
T KOG4151|consen 570 ASISESDRQKILKEKALGKIEELMTE-----------ENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEV 638 (748)
T ss_pred cCcchhhHHHHHHHhcchhhHHHhhc-----------ccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHh
Confidence 97554 47778776666666666656 79999999999999998877554 455664 455555555544
Q ss_pred cccCchHHHHHHHHHHHhhcCCHhhhHH-HHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCCh
Q 048113 186 SEKSSGLTEKAIALLENIVSSSEDALQE-IAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVM 264 (339)
Q Consensus 186 ~~~~~~~~~~a~~~L~n~l~~~~~~~~~-i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i 264 (339)
- .+.....+++++. .+....++... +..-......++.++.+.+..+|...+.+..|+.... .+..+.+.+...+
T Consensus 639 ~--~E~~~lA~a~a~a-~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~-~ei~~~~~~~~~~ 714 (748)
T KOG4151|consen 639 A--DEKFELAGAGALA-AITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEAL-FEIAEKIFETEVM 714 (748)
T ss_pred h--hhHHhhhcccccc-chhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHH-HHHHHHhccchHH
Confidence 2 3555556656555 33333333222 3332457788899999999999999999999965432 3344555555555
Q ss_pred HHHHHh
Q 048113 265 PGLLQL 270 (339)
Q Consensus 265 ~~L~~l 270 (339)
+.+...
T Consensus 715 ~~l~~~ 720 (748)
T KOG4151|consen 715 ELLSGL 720 (748)
T ss_pred HHHHHH
Confidence 555544
No 157
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.79 E-value=0.072 Score=43.03 Aligned_cols=147 Identities=18% Similarity=0.124 Sum_probs=97.2
Q ss_pred ChHHHHHhhcC--CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHh
Q 048113 82 IVPVLLEVLQC--QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHN 159 (339)
Q Consensus 82 ~i~~Lv~lL~~--~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~n 159 (339)
-+..++..|.. .++++|..+.-++..+- +..+... ..-.-+.+-..+.. .+.+....++.++..
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~-~~~~~~~i~~~~~~-----------~~~d~~i~~~~~l~~ 69 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEF-KEKISDFIESLLDE-----------GEMDSLIIAFSALTA 69 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHCC-----------HHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHH-HHHHHHHHHHHHcc-----------ccchhHHHHHHHHHH
Confidence 34566666654 46789999988887773 2222222 11122233334444 334466677777877
Q ss_pred hcC-CCCChHHHH-hcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc-CChH-H
Q 048113 160 LST-CHQLISPIV-SSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE-GSPQ-C 235 (339)
Q Consensus 160 Ls~-~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~-~ 235 (339)
|=. .++....+. ..|..+.++.++....++......++.+|. .-+.+...|..+.+ .+++-|-++++. .++. +
T Consensus 70 lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~-aAc~d~~~r~~I~~--~~~~~L~~~~~~~~~~~~i 146 (157)
T PF11701_consen 70 LFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLS-AACIDKSCRTFISK--NYVSWLKELYKNSKDDSEI 146 (157)
T ss_dssp HCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHH-HHTTSHHHHHCCHH--HCHHHHHHHTTTCC-HH-C
T ss_pred HhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHH-HHHccHHHHHHHHH--HHHHHHHHHHccccchHHH
Confidence 744 556666665 459999999999833346788889999999 77888888888875 689999999964 4455 7
Q ss_pred HHHHHHHHHH
Q 048113 236 KEHAVAILLL 245 (339)
Q Consensus 236 ~~~a~~~L~~ 245 (339)
+..|+.+|+.
T Consensus 147 r~~A~v~L~K 156 (157)
T PF11701_consen 147 RVLAAVGLCK 156 (157)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8888877764
No 158
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.75 E-value=0.078 Score=38.97 Aligned_cols=87 Identities=14% Similarity=0.106 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHH-HHHHHHh--cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh--cCChHHHHHhhc
Q 048113 17 QIQAANELGKLSRR-QKHKLVE--RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK--SGIVPVLLEVLQ 91 (339)
Q Consensus 17 ~~~a~~~L~~l~~~-~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~--~g~i~~Lv~lL~ 91 (339)
|.-++.+|...+.. ... +.+ ..++++++..+.++++.+|..|+.+|.++++. .+..+.. ..+.+.|.+++.
T Consensus 3 R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHc
Confidence 45567777777766 222 222 56899999999999999999999999999983 2334433 367788888888
Q ss_pred CCChhHHHHHHHHHHHH
Q 048113 92 CQSTTLIELTVAAMLIL 108 (339)
Q Consensus 92 ~~~~~~~~~a~~~L~nL 108 (339)
.+++.++..| ..|-+|
T Consensus 79 D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRL 94 (97)
T ss_pred CCchhHHHHH-HHHHHH
Confidence 8888877766 555444
No 159
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.70 E-value=0.19 Score=49.56 Aligned_cols=208 Identities=14% Similarity=0.120 Sum_probs=117.2
Q ss_pred cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHH
Q 048113 38 RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLE 117 (339)
Q Consensus 38 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~ 117 (339)
.+++..++.=..+.++.+|..|++.++.+..+ .... -...++.+++.+.++.++..++....++=.. ....
T Consensus 85 ~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~i~e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~--~~~~ 155 (734)
T KOG1061|consen 85 ILAVNTFLKDCEDPNPLIRALALRTMGCLRVD--KITE-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI--DPDL 155 (734)
T ss_pred HhhhhhhhccCCCCCHHHHHHHhhceeeEeeh--HHHH-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcC--Chhh
Confidence 34455555555566888888888887766662 1111 2356788899999999999887777766543 3466
Q ss_pred HHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCC-hHHHHhcCcHHHHHHHhhccccCchHHHHH
Q 048113 118 IASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQL-ISPIVSSGVTYCLLQLIHSSEKSSGLTEKA 196 (339)
Q Consensus 118 i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a 196 (339)
+.+.|.++.|.+++.+ .++.+..+|+.+|..+...+.+ -..-...-.+..++..+.... +=-+...
T Consensus 156 ~~~~gl~~~L~~ll~D-----------~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~--EW~qi~I 222 (734)
T KOG1061|consen 156 VEDSGLVDALKDLLSD-----------SNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECT--EWGQIFI 222 (734)
T ss_pred ccccchhHHHHHHhcC-----------CCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhh--hhhHHHH
Confidence 7789999999999997 7999999999999998664332 111111112333333333321 1112233
Q ss_pred HHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCC
Q 048113 197 IALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGT 275 (339)
Q Consensus 197 ~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 275 (339)
+..+.+....++.... ..+..+...|++.++.+.-.+..++..+...... .....-...-|+|+.++...+
T Consensus 223 L~~l~~y~p~d~~ea~------~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~--~~~~~~~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 223 LDCLAEYVPKDSREAE------DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ--VNELLFKKVAPPLVTLLSSES 293 (734)
T ss_pred HHHHHhcCCCCchhHH------HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH--HHHHHHHHhcccceeeecccc
Confidence 3344422222221111 2344455555665655555566666555543211 122233345555555554444
No 160
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=95.65 E-value=0.1 Score=44.56 Aligned_cols=134 Identities=19% Similarity=0.203 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHHHhcCc---cchHHHHhcchHHHHHHHhcCCCCCCC--Ccc-C-CCCHHHHHHHHHHHHhhcCCCCChH
Q 048113 96 TLIELTVAAMLILSSCL---ENKLEIASSGAIQRLVEILNGDLADDD--NSY-G-RISVQAKIDAIATLHNLSTCHQLIS 168 (339)
Q Consensus 96 ~~~~~a~~~L~nLs~~~---~~~~~i~~~g~i~~Lv~ll~~~~~~~~--~~~-~-~~~~~~~~~a~~~L~nLs~~~~~~~ 168 (339)
.+|++|..+|.|++-.= ..-+.| ....+.-|+...-+++++.. +.. + .....-+..|+.+|+.||..+.|.+
T Consensus 81 ~lREnalV~laNisgqLdLs~~~e~I-~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NVD 159 (257)
T PF12031_consen 81 QLRENALVTLANISGQLDLSDYPESI-ARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNVD 159 (257)
T ss_pred HHhhcceEeeeeeeeeeecccCchHH-HHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCcc
Confidence 46888888888887321 112222 23345666666666543332 221 1 1234567889999999999999998
Q ss_pred HHHhcCcHH-------HHHHHhhccccCchHHHHHHHHHHHhhcCCHh-hhHHHHhhCCcHHHHHHHhhcCC
Q 048113 169 PIVSSGVTY-------CLLQLIHSSEKSSGLTEKAIALLENIVSSSED-ALQEIAATCGAIRALVETIEEGS 232 (339)
Q Consensus 169 ~i~~~g~i~-------~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~-~~~~i~~~~g~i~~Lv~lL~~~~ 232 (339)
-+...+-+. .|++++... .+.-.++-|+..|. +++..++ ....+..+.++|..|+.++++..
T Consensus 160 liLaTpp~sRlE~l~~~L~r~l~~~-e~~v~REfAvvlL~-~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 160 LILATPPFSRLERLFHTLVRLLGMR-EDQVCREFAVVLLS-NLAQGDEAAARAIAMQKPCISHLIAFIEDAE 229 (257)
T ss_pred eeeeCCCHHHHHHHHHHHHHHhccc-cchhHHHHHHHHHH-HHhcccHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 888876433 444555444 35677889999999 5655444 34355545799999999998743
No 161
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.60 E-value=1.6 Score=45.66 Aligned_cols=255 Identities=13% Similarity=0.116 Sum_probs=142.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc---CCcchhhHHhhcCChHHHHHh
Q 048113 13 ERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLAC---GSERNKIRIVKSGIVPVLLEV 89 (339)
Q Consensus 13 ~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~---~~~~~~~~i~~~g~i~~Lv~l 89 (339)
..+.+.+|++.|..++...-+...=..++|.++.++.++..++|..|+.+|..+-. .-+..-..+.-.-..|.|-.+
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l 515 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL 515 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh
Confidence 45678899999999987632333335689999999999999999999988876544 233344445555567777777
Q ss_pred hcCCChh-HHHHHHHHHHHHhc------------------CccchHHHH----h------cchHHHHHH-HhcCCCCCCC
Q 048113 90 LQCQSTT-LIELTVAAMLILSS------------------CLENKLEIA----S------SGAIQRLVE-ILNGDLADDD 139 (339)
Q Consensus 90 L~~~~~~-~~~~a~~~L~nLs~------------------~~~~~~~i~----~------~g~i~~Lv~-ll~~~~~~~~ 139 (339)
+.+.+.. ++..=+..|..|+. ++++-+-.. + ...++..+. ++..
T Consensus 516 ~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd------ 589 (1431)
T KOG1240|consen 516 LNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSD------ 589 (1431)
T ss_pred hccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcC------
Confidence 7764332 33333333333321 111100000 0 012222222 3322
Q ss_pred CccCCCCHHHHHHHHHHHHhhcC-CCCCh-HHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhh
Q 048113 140 NSYGRISVQAKIDAIATLHNLST-CHQLI-SPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAAT 217 (339)
Q Consensus 140 ~~~~~~~~~~~~~a~~~L~nLs~-~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~ 217 (339)
..+-++..-+..|.-||. ....+ .. =.++.|..+|.+. +..++-.=...+. -++..- +. +-++
T Consensus 590 -----~~~~Vkr~Lle~i~~LC~FFGk~ksND----~iLshLiTfLNDk--Dw~LR~aFfdsI~-gvsi~V-G~-rs~s- 654 (1431)
T KOG1240|consen 590 -----SPPIVKRALLESIIPLCVFFGKEKSND----VILSHLITFLNDK--DWRLRGAFFDSIV-GVSIFV-GW-RSVS- 654 (1431)
T ss_pred -----CchHHHHHHHHHHHHHHHHhhhccccc----chHHHHHHHhcCc--cHHHHHHHHhhcc-ceEEEE-ee-eeHH-
Confidence 334455555555555543 11100 00 1355666666653 2232222222222 111110 11 1123
Q ss_pred CCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113 218 CGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 218 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 291 (339)
...+|-|.+-|.++++-+...|++++.-|+... . .++.. -...++....++-+++.-+|..++.++...+.
T Consensus 655 eyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~-l-l~K~~-v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 655 EYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG-L-LRKPA-VKDILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc-c-cchHH-HHHHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 467888888999999999999999999998753 2 22221 12245555566778899999999998876654
No 162
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.59 E-value=2.9 Score=41.87 Aligned_cols=282 Identities=11% Similarity=0.103 Sum_probs=166.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHH-HHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113 4 MLMDNLLNGERETQIQAANELGKL-SRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSG 81 (339)
Q Consensus 4 ~Lv~~L~s~~~~~~~~a~~~L~~l-~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g 81 (339)
-|..+|+|.....+..|.+-|-.+ +++ + -....|.+++-..+.+.+++.-..--|...+...++ -..+
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~d-----vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpd-LALL---- 108 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKD-----VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPD-LALL---- 108 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCc-----HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCC-ceee----
Confidence 477888888888877777665544 333 2 233457778878888888888776666666663222 1111
Q ss_pred ChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhc
Q 048113 82 IVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS 161 (339)
Q Consensus 82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs 161 (339)
-|..+-+-|..+++.+|.-|+++|..+ |..++..=.+-.+-+.... .++-+|..|+.++-.|=
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D-----------~s~yVRk~AA~AIpKLY 171 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTD-----------PSPYVRKTAAHAIPKLY 171 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcC-----------CcHHHHHHHHHhhHHHh
Confidence 245666778888888998887777542 2222222223333344444 68899999999999984
Q ss_pred C-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHH
Q 048113 162 T-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAV 240 (339)
Q Consensus 162 ~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~ 240 (339)
. +++.+..+. +.+-.+|.+. ++.+.-.|+.+.. .+ +|+.- .+. .+-...|.++|.+-++.-|-..+
T Consensus 172 sLd~e~k~qL~-----e~I~~LLaD~--splVvgsAv~AF~-ev--CPerl-dLI--HknyrklC~ll~dvdeWgQvvlI 238 (968)
T KOG1060|consen 172 SLDPEQKDQLE-----EVIKKLLADR--SPLVVGSAVMAFE-EV--CPERL-DLI--HKNYRKLCRLLPDVDEWGQVVLI 238 (968)
T ss_pred cCChhhHHHHH-----HHHHHHhcCC--CCcchhHHHHHHH-Hh--chhHH-HHh--hHHHHHHHhhccchhhhhHHHHH
Confidence 4 666666553 3455566664 4666777777777 33 33333 333 35678888888776666666666
Q ss_pred HHHHHhhccCc--hhHHHHHHh-cC------------------------ChHHHHHhhhcCCHHHHHHHHHHHHHHhccC
Q 048113 241 AILLLICKSCR--DKYRSSILK-EG------------------------VMPGLLQLSVDGTWRAKNMARDLLLLLRDCS 293 (339)
Q Consensus 241 ~~L~~l~~~~~--~~~~~~~~~-~g------------------------~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 293 (339)
..|..-|...- +..-....+ .| .+...-.++.+.++.+...++.+.+.++...
T Consensus 239 ~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~ 318 (968)
T KOG1060|consen 239 NMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN 318 (968)
T ss_pred HHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH
Confidence 66655443110 000000000 00 1223334567788888888888988887654
Q ss_pred CCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHHH
Q 048113 294 SFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIA 334 (339)
Q Consensus 294 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v~ 334 (339)
+ .....+.+++.+ -.....++...+-.+.+..
T Consensus 319 ~--------~~~i~kaLvrLL-rs~~~vqyvvL~nIa~~s~ 350 (968)
T KOG1060|consen 319 Q--------VTKIAKALVRLL-RSNREVQYVVLQNIATISI 350 (968)
T ss_pred H--------HHHHHHHHHHHH-hcCCcchhhhHHHHHHHHh
Confidence 2 133466666654 3444555555555554443
No 163
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.59 E-value=0.83 Score=48.61 Aligned_cols=282 Identities=15% Similarity=0.177 Sum_probs=147.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHh--cCChHHHHHHhccCCHHHHHHH---HHHHHHhccC--Ccch--h
Q 048113 5 LMDNLLNGERETQIQAANELGKLSRR-QKHKLVE--RGIIAPLISMLCSQDYEAIEAA---LLSLLSLACG--SERN--K 74 (339)
Q Consensus 5 Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A---~~~L~~Ls~~--~~~~--~ 74 (339)
|+.-|.+..|.+|+.++-+|..+..+ -.+.+.+ ...+..+....++=.+.+|+.| +.+|..++.. +..+ +
T Consensus 1044 LL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~ 1123 (1702)
T KOG0915|consen 1044 LLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAK 1123 (1702)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccc
Confidence 44445688999999999999999986 2222222 2455555555444344555554 5555555432 1111 1
Q ss_pred hHHhhcCChHHHHH--hhcCCChhHHHHHHHHHHHHhcCccc--hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHH
Q 048113 75 IRIVKSGIVPVLLE--VLQCQSTTLIELTVAAMLILSSCLEN--KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAK 150 (339)
Q Consensus 75 ~~i~~~g~i~~Lv~--lL~~~~~~~~~~a~~~L~nLs~~~~~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~ 150 (339)
..=+-..++|.|+. ++ +.-++++..+..++..|+..... ++.+ ...||.|+..... -.+.+.
T Consensus 1124 ~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s~-----------lE~~vL 1189 (1702)
T KOG0915|consen 1124 GKEALDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYSE-----------LEPQVL 1189 (1702)
T ss_pred HHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHccc-----------cchHHH
Confidence 11111123444443 22 45688999999999999865443 3322 3356666666544 222222
Q ss_pred -----------HHHHHHHHh-hcCCCCChHHH------Hh----cCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCC-
Q 048113 151 -----------IDAIATLHN-LSTCHQLISPI------VS----SGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSS- 207 (339)
Q Consensus 151 -----------~~a~~~L~n-Ls~~~~~~~~i------~~----~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~- 207 (339)
.+|+..++. .+++...-+.| ++ ...+|.+.++++++. .-..+..|...+. .++..
T Consensus 1190 nYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sV-gl~Tkvg~A~fI~-~L~~r~ 1267 (1702)
T KOG0915|consen 1190 NYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSV-GLGTKVGCASFIS-LLVQRL 1267 (1702)
T ss_pred HHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC-CCCcchhHHHHHH-HHHHHh
Confidence 223333332 22222211111 11 135677777777653 2334555555555 44321
Q ss_pred HhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHH
Q 048113 208 EDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLL 287 (339)
Q Consensus 208 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~ 287 (339)
+..-.... ...+..+.-.+++.++.++...+.++..++..+.+...+.+ +..+........+..+..++.++.
T Consensus 1268 ~~emtP~s--gKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKL-----ie~~l~~~l~k~es~~siscatis 1340 (1702)
T KOG0915|consen 1268 GSEMTPYS--GKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKL-----IETLLADLLGKDESLKSISCATIS 1340 (1702)
T ss_pred ccccCcch--hHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHH-----HHHHHHHHhccCCCccchhHHHHH
Confidence 11111111 23566777777888899998888888888776655333333 444444433333333366666666
Q ss_pred HHhccCCCcchhhhhhhHHHHHHHHHHH
Q 048113 288 LLRDCSSFGSRSKQLKNELVEQIMQEID 315 (339)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 315 (339)
++++... .+-++....++..+-
T Consensus 1341 ~Ian~s~------e~Lkn~asaILPLiF 1362 (1702)
T KOG0915|consen 1341 NIANYSQ------EMLKNYASAILPLIF 1362 (1702)
T ss_pred HHHHhhH------HHHHhhHHHHHHHHH
Confidence 6665432 244444455555544
No 164
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.57 E-value=0.077 Score=36.61 Aligned_cols=67 Identities=13% Similarity=0.191 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCC
Q 048113 150 KIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCG 219 (339)
Q Consensus 150 ~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g 219 (339)
.+.|++++.+++..+.+...+-+.++++.++++....+ .-.++--|..+|+ .++.+.++.+.+.+ .|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~-v~siRGT~fy~Lg-lis~T~~G~~~L~~-~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSP-VLSIRGTCFYVLG-LISSTEEGAEILDE-LG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCC-ccchHHHHHHHHH-HHhCCHHHHHHHHH-cC
Confidence 56799999999998888888888899999999998764 5788999999999 99999999988765 44
No 165
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=1.5 Score=45.20 Aligned_cols=242 Identities=14% Similarity=0.094 Sum_probs=141.1
Q ss_pred CChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCC-hhHHHHHHHHHHHHhcCccchHH
Q 048113 39 GIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQS-TTLIELTVAAMLILSSCLENKLE 117 (339)
Q Consensus 39 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~nLs~~~~~~~~ 117 (339)
+++..|...|++.+..+++.|++.++.++...|. .+ .-.++...+.++...+ +..-..++-+|..|+...--...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~---~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP---EL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH---HH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 5677777888888999999999999999996551 11 2235666666554433 44556788888888853211110
Q ss_pred HHhcchHHHHHHHhcCCCCCCCCcc--CCCCHHHHHHHHHHHHhhcC--CCCChHHHHhcCcHHHHHHHhhccccCchHH
Q 048113 118 IASSGAIQRLVEILNGDLADDDNSY--GRISVQAKIDAIATLHNLST--CHQLISPIVSSGVTYCLLQLIHSSEKSSGLT 193 (339)
Q Consensus 118 i~~~g~i~~Lv~ll~~~~~~~~~~~--~~~~~~~~~~a~~~L~nLs~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 193 (339)
. =...+|.+++-+.-+ +.+ .+....+|..|+.+.|.++. .+..-+.+++.=+-..|...+.+. .-..+
T Consensus 417 ~-l~dVvplI~kaL~Yd-----~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDr--evncR 488 (1133)
T KOG1943|consen 417 L-LEDVVPLILKALHYD-----VRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDR--EVNCR 488 (1133)
T ss_pred H-HHHHHHHHHHHhhhh-----hhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCc--hhhHh
Confidence 0 023466666655431 111 12356789999999999976 333333343332222333444443 46788
Q ss_pred HHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc---CChHHHHHHHHHHHH-hhccCchhHHHHHHhcCChHHHHH
Q 048113 194 EKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE---GSPQCKEHAVAILLL-ICKSCRDKYRSSILKEGVMPGLLQ 269 (339)
Q Consensus 194 ~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~---~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~~g~i~~L~~ 269 (339)
+.|.+++..++=.. |-+|.=+.++.+ -+...+.++-..++. ++.. +.+++.+ +..|+.
T Consensus 489 RAAsAAlqE~VGR~-----------~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~--~~y~~~~-----f~~L~t 550 (1133)
T KOG1943|consen 489 RAASAALQENVGRQ-----------GNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEF--SGYREPV-----FNHLLT 550 (1133)
T ss_pred HHHHHHHHHHhccC-----------CCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhh--hhHHHHH-----HHHHHh
Confidence 89999998433211 222211222222 123334444433322 2323 2244443 445554
Q ss_pred h-hhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH
Q 048113 270 L-SVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID 315 (339)
Q Consensus 270 l-l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 315 (339)
. +.+.+..+++.|++.|..|+... .+.+.+..+++++....
T Consensus 551 ~Kv~HWd~~irelaa~aL~~Ls~~~-----pk~~a~~~L~~lld~~l 592 (1133)
T KOG1943|consen 551 KKVCHWDVKIRELAAYALHKLSLTE-----PKYLADYVLPPLLDSTL 592 (1133)
T ss_pred cccccccHHHHHHHHHHHHHHHHhh-----HHhhcccchhhhhhhhc
Confidence 4 77889999999999999987753 34566777777766654
No 166
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=95.43 E-value=2 Score=43.43 Aligned_cols=268 Identities=13% Similarity=0.121 Sum_probs=120.9
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhccC-CcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHH
Q 048113 41 IAPLISMLCSQDYEAIEAALLSLLSLACG-SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA 119 (339)
Q Consensus 41 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~ 119 (339)
+++...++++...+.+...+.-...++.. +...+..+.....+|.+-.+..+.+..++...+....+++---+ +..-
T Consensus 357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~t- 434 (759)
T KOG0211|consen 357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERT- 434 (759)
T ss_pred hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcC-
Confidence 34444444444444444444444444431 22233444444455666555555555666655555554442111 0000
Q ss_pred hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHH
Q 048113 120 SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIA 198 (339)
Q Consensus 120 ~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~ 198 (339)
-....|.++..++. ..+.++.+....+..+-. .+......+..-.++.++.+-.+. .-.++...+.
T Consensus 435 i~~llp~~~~~l~d-----------e~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~--~wRvr~ail~ 501 (759)
T KOG0211|consen 435 ISELLPLLIGNLKD-----------EDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL--LWRVRLAILE 501 (759)
T ss_pred ccccChhhhhhcch-----------hhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch--hHHHHHHHHH
Confidence 01234555556666 677788777766655533 333344445555566666555442 2344444444
Q ss_pred HHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHH
Q 048113 199 LLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRA 278 (339)
Q Consensus 199 ~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~ 278 (339)
.+. .++.... ..+.+ .-.-+-+..-+.+..-.+++.|+..+..++...+. .-.....+|.+..+..+++-..
T Consensus 502 ~ip-~la~q~~--~~~~~-~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~----~w~~~~~i~k~L~~~~q~~y~~ 573 (759)
T KOG0211|consen 502 YIP-QLALQLG--VEFFD-EKLAELLRTWLPDHVYSIREAAARNLPALVETFGS----EWARLEEIPKLLAMDLQDNYLV 573 (759)
T ss_pred HHH-HHHHhhh--hHHhh-HHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc----chhHHHhhHHHHHHhcCcccch
Confidence 444 2222211 11111 11111111122222335566666666555543221 1111224555555555544555
Q ss_pred HHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcC-cccchHHHHHHHHHHHHh
Q 048113 279 KNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEG-DTVAGTTLRLVEEMIAKL 336 (339)
Q Consensus 279 ~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~a~~~l~~~v~~~ 336 (339)
|..-+..+..|+.-- ++.+....+..++..+..|. ..+|=++.+.|..++..|
T Consensus 574 R~t~l~si~~la~v~-----g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L 627 (759)
T KOG0211|consen 574 RMTTLFSIHELAEVL-----GQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLL 627 (759)
T ss_pred hhHHHHHHHHHHHHh-----ccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhc
Confidence 555555555554421 22234444444444444444 355556666666666554
No 167
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.43 E-value=0.66 Score=41.69 Aligned_cols=172 Identities=16% Similarity=0.124 Sum_probs=110.9
Q ss_pred CChHHHH-HHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc--ch
Q 048113 39 GIIAPLI-SMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE--NK 115 (339)
Q Consensus 39 g~i~~Lv-~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~--~~ 115 (339)
+.+..|+ .-+++.++.+|+.|+++|+-+|--+.+... ..++.+...++.++++++..|+.++..+....+ .-
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4555555 567888999999999999999985442221 236778888877789999999999998874221 11
Q ss_pred H-------HHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhcccc
Q 048113 116 L-------EIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEK 188 (339)
Q Consensus 116 ~-------~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~ 188 (339)
. .......+..+.+.+.+ .+++++..|+..++.|-....... ...++..|+-+..++..
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~-----------~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t 166 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDS-----------ENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPST 166 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCccc
Confidence 1 12234567778888888 788999999999999865443222 12344455544444321
Q ss_pred -CchHHHHHHHHHHHhhc-CCHhhhHHHHhhCCcHHHHHHHhhcC
Q 048113 189 -SSGLTEKAIALLENIVS-SSEDALQEIAATCGAIRALVETIEEG 231 (339)
Q Consensus 189 -~~~~~~~a~~~L~n~l~-~~~~~~~~i~~~~g~i~~Lv~lL~~~ 231 (339)
+..-.++++...--..+ .++.++..+. ..+++.+-.+.+..
T Consensus 167 ~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~--~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 167 EDNQRLRQCLSVFFPVYASSSPENQERLA--EAFLPTLRTLSNAP 209 (298)
T ss_pred CCcHHHHHHHHHHHHHHHcCCHHHHHHHH--HHHHHHHHHHHhCc
Confidence 22345566654443444 4455555554 47788877777653
No 168
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.37 E-value=1.7 Score=37.80 Aligned_cols=222 Identities=15% Similarity=0.136 Sum_probs=128.3
Q ss_pred CHHHHHHHHHHHHHHHHH-----------------------HHHHHHhcCChHHHHHHhccC--CHHHHHHHHHHHHHhc
Q 048113 13 ERETQIQAANELGKLSRR-----------------------QKHKLVERGIIAPLISMLCSQ--DYEAIEAALLSLLSLA 67 (339)
Q Consensus 13 ~~~~~~~a~~~L~~l~~~-----------------------~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls 67 (339)
....|.+|+..|+++... +-.++.....++.|+..|.+. .|.+|..|..+|+.+.
T Consensus 18 ~l~~r~rALf~Lr~l~~~~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~ 97 (289)
T KOG0567|consen 18 PLQNRFRALFNLRNLLGPAAIKAITKAFIDDSALLKHELAYVLGQMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG 97 (289)
T ss_pred HHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccchhhhhhhhccchhhHHHHHHhcccccchHHHHHHHHHHHhhc
Confidence 345567777777776532 112223455677777766543 5677888888887776
Q ss_pred cCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc---c--ch-HHH-------HhcchHHHHHHHhcCC
Q 048113 68 CGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL---E--NK-LEI-------ASSGAIQRLVEILNGD 134 (339)
Q Consensus 68 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~---~--~~-~~i-------~~~g~i~~Lv~ll~~~ 134 (339)
. .+..+.+-+..+.+...+++-+..++..+---+ . +. ..+ ...+-++.|-..+...
T Consensus 98 ~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~ 166 (289)
T KOG0567|consen 98 D-----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDE 166 (289)
T ss_pred c-----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhc
Confidence 3 224455666665555566665555555542100 0 00 000 1122355555444332
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHH
Q 048113 135 LADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEI 214 (339)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i 214 (339)
+ ...--+..|+-.|.|+-.. ..|..|++-+... +.-.+..+..+++ ++
T Consensus 167 t---------~~l~~Ry~amF~LRn~g~E----------eaI~al~~~l~~~--SalfrhEvAfVfG-----------Ql 214 (289)
T KOG0567|consen 167 T---------KPLFERYRAMFYLRNIGTE----------EAINALIDGLADD--SALFRHEVAFVFG-----------QL 214 (289)
T ss_pred c---------hhHHHHHhhhhHhhccCcH----------HHHHHHHHhcccc--hHHHHHHHHHHHh-----------hc
Confidence 1 2222334455555554211 1344455555442 3445556666776 33
Q ss_pred HhhCCcHHHHHHHhhc--CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHh
Q 048113 215 AATCGAIRALVETIEE--GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLR 290 (339)
Q Consensus 215 ~~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~ 290 (339)
.. .-.|+.|.+.|.+ ..+-++-.|+.+|..++.. . .++.|.+.+.+..+-+++.+..+|.++-
T Consensus 215 ~s-~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e--~----------~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 215 QS-PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE--D----------CVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred cc-hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH--H----------HHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 33 4678999998875 3578889999999998743 2 4678888899888889988888887764
No 169
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.32 E-value=0.076 Score=44.06 Aligned_cols=80 Identities=11% Similarity=0.280 Sum_probs=65.0
Q ss_pred hHHHHhcCcHHHHHHHhhccc-------cCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHH
Q 048113 167 ISPIVSSGVTYCLLQLIHSSE-------KSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHA 239 (339)
Q Consensus 167 ~~~i~~~g~i~~Lv~ll~~~~-------~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a 239 (339)
...+++.||+..|+++|.... .+......++.++. .+..+..+...+..+.+++..++..|.+++..++..+
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clk-al~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~ 178 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLK-ALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLA 178 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHH-HHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHH-HHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHH
Confidence 567788899999999986521 12366778889999 7888889999999888999999999999999999999
Q ss_pred HHHHHHhh
Q 048113 240 VAILLLIC 247 (339)
Q Consensus 240 ~~~L~~l~ 247 (339)
+.+|..+|
T Consensus 179 leiL~~lc 186 (187)
T PF06371_consen 179 LEILAALC 186 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999887
No 170
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.31 E-value=1.6 Score=40.39 Aligned_cols=247 Identities=19% Similarity=0.164 Sum_probs=131.4
Q ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhcc-CCH-HHHHHHHHHHHHhccCCcchhhHH
Q 048113 3 EMLMDNLLN-GERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCS-QDY-EAIEAALLSLLSLACGSERNKIRI 77 (339)
Q Consensus 3 ~~Lv~~L~s-~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~-~~~-~~~~~A~~~L~~Ls~~~~~~~~~i 77 (339)
+++++-|.+ .+...|..++-.|..-+.+ .|..|.++|.+..+.+.+.+ ++. .....++.++.-++. +..+-..+
T Consensus 24 ~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~-d~~~~~l~ 102 (361)
T PF07814_consen 24 EYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSR-DGLNMHLL 102 (361)
T ss_pred HHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHcc-CCcchhhh
Confidence 466666763 3456787877777776655 99999999999999998844 333 444445555556665 34444444
Q ss_pred hhcCChHHHHHhhc--CC-----C-------------------------------------hhHHHHHHHHHHHHh----
Q 048113 78 VKSGIVPVLLEVLQ--CQ-----S-------------------------------------TTLIELTVAAMLILS---- 109 (339)
Q Consensus 78 ~~~g~i~~Lv~lL~--~~-----~-------------------------------------~~~~~~a~~~L~nLs---- 109 (339)
.+.+....+++++. .. + ...+..|..++-.++
T Consensus 103 ~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~~~ 182 (361)
T PF07814_consen 103 LDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRSLR 182 (361)
T ss_pred hchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHHHh
Confidence 44455555555554 00 0 011222223332221
Q ss_pred --------c---CccchHHHHhcchHHHHHHHhcC----CCCCCCC-ccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHh
Q 048113 110 --------S---CLENKLEIASSGAIQRLVEILNG----DLADDDN-SYGRISVQAKIDAIATLHNLST-CHQLISPIVS 172 (339)
Q Consensus 110 --------~---~~~~~~~i~~~g~i~~Lv~ll~~----~~~~~~~-~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~ 172 (339)
. .+.-|+.+.+.|++..+++++.+ ......+ .....+......++++|-|.+. ++++...+..
T Consensus 183 ~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~ 262 (361)
T PF07814_consen 183 EAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYLLS 262 (361)
T ss_pred hcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHHHH
Confidence 0 01124556667889999998863 1100000 0111223345568888888876 5677776655
Q ss_pred c--CcHHHH-HHHhhccc-cCchHHHHHHHHHHHhhcCCH-hhhHHHHh-----hCCcHHHHHHHhhc--------CChH
Q 048113 173 S--GVTYCL-LQLIHSSE-KSSGLTEKAIALLENIVSSSE-DALQEIAA-----TCGAIRALVETIEE--------GSPQ 234 (339)
Q Consensus 173 ~--g~i~~L-v~ll~~~~-~~~~~~~~a~~~L~n~l~~~~-~~~~~i~~-----~~g~i~~Lv~lL~~--------~~~~ 234 (339)
. +..+.+ ..++.... ...++...++.++- |++.++ +....+.. ..|.+..-...+.. ..-+
T Consensus 263 ~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlll-NlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~D 341 (361)
T PF07814_consen 263 HRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLL-NLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVPEESSFD 341 (361)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHee-eCCCCCccchHhhhhhHhccchHHHHHhhcccccccccccccccch
Confidence 4 333333 33333321 12344667888888 676654 33333332 12222221111111 1124
Q ss_pred HHHHHHHHHHHhhccCc
Q 048113 235 CKEHAVAILLLICKSCR 251 (339)
Q Consensus 235 ~~~~a~~~L~~l~~~~~ 251 (339)
..-.++++|.||+..++
T Consensus 342 ~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 342 ILILALGLLINLVEHSE 358 (361)
T ss_pred HHHHHHHhHHHheeeCc
Confidence 55678889999987753
No 171
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.26 E-value=3.9 Score=43.93 Aligned_cols=234 Identities=10% Similarity=0.101 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCcchhhHHh--hcCChHHHHHhhcCCC
Q 048113 18 IQAANELGKLSRRQKHKLVERGIIAPLISMLCSQ-DYEAIEAALLSLLSLACGSERNKIRIV--KSGIVPVLLEVLQCQS 94 (339)
Q Consensus 18 ~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~~i~--~~g~i~~Lv~lL~~~~ 94 (339)
..+-+-|++|+.+ +.+.+.|-.++++-++. ...-+.-|+.-++.++.. . ++.+. -...||.|.+.=.+++
T Consensus 939 isTYKELc~LASd----l~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~-a--~~kl~p~l~kLIPrLyRY~yDP~ 1011 (1702)
T KOG0915|consen 939 ISTYKELCNLASD----LGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQ-A--GEKLEPYLKKLIPRLYRYQYDPD 1011 (1702)
T ss_pred chHHHHHHHHHhh----cCChHHHHHHHHHhhhhchhhcccchhhchHHHHHH-H--HHhhhhHHHHhhHHHhhhccCCc
Confidence 3445556666654 11233444555555543 334566677777777773 2 22222 1245777777766666
Q ss_pred hhHHHHHHHHHHHHhcCcc-chHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhc
Q 048113 95 TTLIELTVAAMLILSSCLE-NKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSS 173 (339)
Q Consensus 95 ~~~~~~a~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~ 173 (339)
+.++. |+.-+||-...+. .-..-.-.....-|+.-+.+ ....+|+.+|.+|..|-..+++-+..-..
T Consensus 1012 ~~Vq~-aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~-----------kewRVReasclAL~dLl~g~~~~~~~e~l 1079 (1702)
T KOG0915|consen 1012 KKVQD-AMTSIWNALITDSKKVVDEYLNEILDELLVNLTS-----------KEWRVREASCLALADLLQGRPFDQVKEKL 1079 (1702)
T ss_pred HHHHH-HHHHHHHHhccChHHHHHHHHHHHHHHHHHhccc-----------hhHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 66654 5577777665443 21111123456666666666 78999999999999998765443222111
Q ss_pred -CcHHHHHHHhhccccCchHHHH---HHHHHHHhhcC-----CHhhhHHHHhhCCcHHHHHH--HhhcCChHHHHHHHHH
Q 048113 174 -GVTYCLLQLIHSSEKSSGLTEK---AIALLENIVSS-----SEDALQEIAATCGAIRALVE--TIEEGSPQCKEHAVAI 242 (339)
Q Consensus 174 -g~i~~Lv~ll~~~~~~~~~~~~---a~~~L~n~l~~-----~~~~~~~i~~~~g~i~~Lv~--lL~~~~~~~~~~a~~~ 242 (339)
..+..+++.+++- .+.+++. ++.+|+-++.. ++..-+++. +.++|-|++ .+ +.-++++..++..
T Consensus 1080 pelw~~~fRvmDDI--KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l--~~iLPfLl~~gim-s~v~evr~~si~t 1154 (1702)
T KOG0915|consen 1080 PELWEAAFRVMDDI--KESVREAADKAARALSKLCVRICDVTNGAKGKEAL--DIILPFLLDEGIM-SKVNEVRRFSIGT 1154 (1702)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH--HHHHHHHhccCcc-cchHHHHHHHHHH
Confidence 4566677777663 2444443 33444422211 111112222 235565554 33 5568899999999
Q ss_pred HHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHH
Q 048113 243 LLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWR 277 (339)
Q Consensus 243 L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~ 277 (339)
+..++..++...+.. -...+|.|......-.+.
T Consensus 1155 l~dl~Kssg~~lkP~--~~~LIp~ll~~~s~lE~~ 1187 (1702)
T KOG0915|consen 1155 LMDLAKSSGKELKPH--FPKLIPLLLNAYSELEPQ 1187 (1702)
T ss_pred HHHHHHhchhhhcch--hhHHHHHHHHHccccchH
Confidence 999998765432222 234677777766554444
No 172
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=95.19 E-value=2.9 Score=42.35 Aligned_cols=264 Identities=12% Similarity=0.098 Sum_probs=157.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV 78 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~ 78 (339)
++....++...++.+..++.-...++.. .+..+....++|.+-.+..+.+..++...+.....++--.+.. . .
T Consensus 358 ~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~--~-t 434 (759)
T KOG0211|consen 358 PPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKE--R-T 434 (759)
T ss_pred hhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcC--c-C
Confidence 3445555666667777777777777765 3445555666777777777777777777766666555422200 0 0
Q ss_pred hcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc-chHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113 79 KSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE-NKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL 157 (339)
Q Consensus 79 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L 157 (339)
-.-..|.++..++...+.++.+..+.+..+-...+ ..........+|.++.+-.. ....++......+
T Consensus 435 i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d-----------~~wRvr~ail~~i 503 (759)
T KOG0211|consen 435 ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAED-----------LLWRVRLAILEYI 503 (759)
T ss_pred ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccc-----------hhHHHHHHHHHHH
Confidence 11235666667777778888888777755543322 23444456667777777655 5677888888888
Q ss_pred HhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHH
Q 048113 158 HNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKE 237 (339)
Q Consensus 158 ~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 237 (339)
..++.... ..+.+.-.-+.+...+.+. -..++++|...+. .++......... ...++.++....+++=..+.
T Consensus 504 p~la~q~~--~~~~~~~~~~l~~~~l~d~--v~~Ir~~aa~~l~-~l~~~~G~~w~~---~~~i~k~L~~~~q~~y~~R~ 575 (759)
T KOG0211|consen 504 PQLALQLG--VEFFDEKLAELLRTWLPDH--VYSIREAAARNLP-ALVETFGSEWAR---LEEIPKLLAMDLQDNYLVRM 575 (759)
T ss_pred HHHHHhhh--hHHhhHHHHHHHHhhhhhh--HHHHHHHHHHHhH-HHHHHhCcchhH---HHhhHHHHHHhcCcccchhh
Confidence 87766433 2222211222222223322 2467777777776 343322211111 12456666655555555566
Q ss_pred HHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhcc
Q 048113 238 HAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDC 292 (339)
Q Consensus 238 ~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 292 (339)
..+.++..++.-.+ +.+..+..+|.+..+..+..+.+|.+++..|.-+...
T Consensus 576 t~l~si~~la~v~g----~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 576 TTLFSIHELAEVLG----QEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred HHHHHHHHHHHHhc----cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence 66666666653322 3455567899999999999999999999988777654
No 173
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.03 E-value=4.3 Score=40.61 Aligned_cols=65 Identities=18% Similarity=0.095 Sum_probs=48.7
Q ss_pred HhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchH
Q 048113 47 MLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKL 116 (339)
Q Consensus 47 lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~ 116 (339)
.|++.+..+...|++++..|..-++.--.. ++..|-.+++++...+|-.|.++|..++...+.+.
T Consensus 253 ~l~~K~emV~~EaArai~~l~~~~~r~l~p-----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v 317 (865)
T KOG1078|consen 253 CLRHKSEMVIYEAARAIVSLPNTNSRELAP-----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV 317 (865)
T ss_pred HHhchhHHHHHHHHHHHhhccccCHhhcch-----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc
Confidence 344567788889999999988743322111 77788888888888999999999999997655443
No 174
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.00 E-value=0.085 Score=36.41 Aligned_cols=67 Identities=12% Similarity=0.075 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcC
Q 048113 98 IELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSG 174 (339)
Q Consensus 98 ~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g 174 (339)
.+.+++++.++.+.+..-+.+.+.+.++.++++..+. +...+|--+..+|.-++...+..+.+-+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s----------~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENS----------PVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhC----------CccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 5678999999999888888888889999999999875 688899999999999999999888877765
No 175
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.92 E-value=0.043 Score=30.91 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=19.0
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 048113 41 IAPLISMLCSQDYEAIEAALLSLLSLAC 68 (339)
Q Consensus 41 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~ 68 (339)
+|.++++++++++++|..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 5666777777777777777777776654
No 176
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.90 E-value=5.2 Score=40.90 Aligned_cols=220 Identities=19% Similarity=0.168 Sum_probs=123.5
Q ss_pred CHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhc----cCC----HHHHHHHHHHHHHhccCCcchhhHH-----
Q 048113 13 ERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLC----SQD----YEAIEAALLSLLSLACGSERNKIRI----- 77 (339)
Q Consensus 13 ~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~----~~~----~~~~~~A~~~L~~Ls~~~~~~~~~i----- 77 (339)
+.+.-...++.|..+++- +|+.+.+.|+++.|+..|. .+. +++.+.-+.++..+... .+...+
T Consensus 135 ~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~e--a~~~~~~~~~~ 212 (802)
T PF13764_consen 135 GRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSE--ANSSSSSESKS 212 (802)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHH--Hhhhhhhhccc
Confidence 334444455555555554 9999999999999998764 333 56777777777666652 111111
Q ss_pred -hhcC--------ChHHHHHhhcCC----ChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCcc-C
Q 048113 78 -VKSG--------IVPVLLEVLQCQ----STTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSY-G 143 (339)
Q Consensus 78 -~~~g--------~i~~Lv~lL~~~----~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~-~ 143 (339)
.... -+..|+..+.++ ++.+....+++|-+|+..++.+.. .|++.++....++.++. .
T Consensus 213 ~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~--------~Lv~~F~p~l~f~~~D~~~ 284 (802)
T PF13764_consen 213 SSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMD--------ALVEHFKPYLDFDKFDEEH 284 (802)
T ss_pred cccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHH--------HHHHHHHHhcChhhccccc
Confidence 1122 267777777664 477888888999999987765443 33333333222222221 1
Q ss_pred CCCHHHHHHHHHHHHhhcC----CC---CChHHHHhcCcHHHHHHHhhcccc------Cc--------hHHHHHHHHHHH
Q 048113 144 RISVQAKIDAIATLHNLST----CH---QLISPIVSSGVTYCLLQLIHSSEK------SS--------GLTEKAIALLEN 202 (339)
Q Consensus 144 ~~~~~~~~~a~~~L~nLs~----~~---~~~~~i~~~g~i~~Lv~ll~~~~~------~~--------~~~~~a~~~L~n 202 (339)
+.+..+ .+..++.++. +. ..|..+++.|+++..++.|....+ ++ +-...++..|.
T Consensus 285 ~~~~~~---~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~iL~lL~- 360 (802)
T PF13764_consen 285 SPDEQF---KLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPYILRLLR- 360 (802)
T ss_pred CchHHH---HHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHHHHHHHHH-
Confidence 122222 2444444432 22 236788999999999998866422 11 22345777777
Q ss_pred hhcCCHhhhHHHHhhCCcHHHHHHHhhc-C-ChHHHHHHHHHHHHhhc
Q 048113 203 IVSSSEDALQEIAATCGAIRALVETIEE-G-SPQCKEHAVAILLLICK 248 (339)
Q Consensus 203 ~l~~~~~~~~~i~~~~g~i~~Lv~lL~~-~-~~~~~~~a~~~L~~l~~ 248 (339)
-++......+.+.. .+++ +++..|.. . +..+=..|-.+|-.++.
T Consensus 361 GLa~gh~~tQ~~~~-~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 361 GLARGHEPTQLLIA-EQLL-PLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred HHHhcCHHHHHHHH-hhHH-HHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 45554443334444 4677 44555543 2 34444444455555554
No 177
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.89 E-value=1.3 Score=41.86 Aligned_cols=150 Identities=10% Similarity=0.009 Sum_probs=90.0
Q ss_pred hcCChHHHHHHhc----cCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcC-CChhHHHHHHHHHHHHhcC
Q 048113 37 ERGIIAPLISMLC----SQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQC-QSTTLIELTVAAMLILSSC 111 (339)
Q Consensus 37 ~~g~i~~Lv~lL~----~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~ 111 (339)
+.|....++..+. +++...+..|++.|.+.+.+.|+....... -.+..++.-|.+ .+.++...++.+|..+...
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 5677666665443 446688999999999999964544333322 244555555544 4677888888888777643
Q ss_pred ccchHHH-HhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCC--CChHHHHhc--CcHHHHHHHhhcc
Q 048113 112 LENKLEI-ASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCH--QLISPIVSS--GVTYCLLQLIHSS 186 (339)
Q Consensus 112 ~~~~~~i-~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~--~~~~~i~~~--g~i~~Lv~ll~~~ 186 (339)
-.+...- .=..+.-.+..++.+ .+++++.+|...+..|+... ..+..+.+. +...+++-.+++.
T Consensus 331 ~~~~~l~~~~l~ialrlR~l~~s-----------e~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~ 399 (533)
T KOG2032|consen 331 ASNDDLESYLLNIALRLRTLFDS-----------EDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDP 399 (533)
T ss_pred hhhcchhhhchhHHHHHHHHHHh-----------cChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCC
Confidence 3222210 012234466677777 89999999999999998732 334444432 3344455555553
Q ss_pred ccCchHHHHHHHHHH
Q 048113 187 EKSSGLTEKAIALLE 201 (339)
Q Consensus 187 ~~~~~~~~~a~~~L~ 201 (339)
.+.+ ..|++...
T Consensus 400 --~p~v-a~ACr~~~ 411 (533)
T KOG2032|consen 400 --NPYV-ARACRSEL 411 (533)
T ss_pred --ChHH-HHHHHHHH
Confidence 2333 34444444
No 178
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.84 E-value=0.03 Score=45.25 Aligned_cols=105 Identities=19% Similarity=0.246 Sum_probs=74.6
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhc--cCCHHHHHHHHHHHHHhccCCcchhh
Q 048113 2 EEMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLC--SQDYEAIEAALLSLLSLACGSERNKI 75 (339)
Q Consensus 2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~--~~~~~~~~~A~~~L~~Ls~~~~~~~~ 75 (339)
++++-.++..++.+....++.++..+--. ....+...|.++.+..+.. +++...+..++.+|..=|. .+.+.
T Consensus 45 ~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r 122 (157)
T PF11701_consen 45 SDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI--DKSCR 122 (157)
T ss_dssp HHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHH
T ss_pred HHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHH
Confidence 34555666555555677777777666543 6667778999999999998 7788888888888877777 45555
Q ss_pred HHhhcCChHHHHHhhcC-CChh-HHHHHHHHHHHH
Q 048113 76 RIVKSGIVPVLLEVLQC-QSTT-LIELTVAAMLIL 108 (339)
Q Consensus 76 ~i~~~g~i~~Lv~lL~~-~~~~-~~~~a~~~L~nL 108 (339)
..+...+++.|-..++. +++. ++..|+..|+.|
T Consensus 123 ~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 123 TFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 55566688999999954 4555 788888877653
No 179
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.78 E-value=4.4 Score=39.50 Aligned_cols=168 Identities=18% Similarity=0.181 Sum_probs=91.0
Q ss_pred CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCChHHHH
Q 048113 93 QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQLISPIV 171 (339)
Q Consensus 93 ~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~ 171 (339)
+++..+..|+..+......-+... ..++..+++++.. ++..+|..|++.|..+|.+ ++....+
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~----~~Ai~a~~DLcED-----------ed~~iR~~aik~lp~~ck~~~~~v~kv- 97 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQ----EEAINAQLDLCED-----------EDVQIRKQAIKGLPQLCKDNPEHVSKV- 97 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGH----HHHHHHHHHHHT------------SSHHHHHHHHHHGGGG--T--T-HHHH-
T ss_pred CCHHHHHHHHHHHHHHHhhChhhH----HHHHHHHHHHHhc-----------ccHHHHHHHHHhHHHHHHhHHHHHhHH-
Confidence 467788888888888775443322 2368999999998 8999999999999999995 5666665
Q ss_pred hcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhh---cCChHHHHHHHHHHHHhhc
Q 048113 172 SSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIE---EGSPQCKEHAVAILLLICK 248 (339)
Q Consensus 172 ~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~---~~~~~~~~~a~~~L~~l~~ 248 (339)
++.|+++|++.+ ..-...+-.+|..++..++ .+.+..+...+. ++++.+++.++..|..-..
T Consensus 98 ----aDvL~QlL~tdd--~~E~~~v~~sL~~ll~~d~---------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~ 162 (556)
T PF05918_consen 98 ----ADVLVQLLQTDD--PVELDAVKNSLMSLLKQDP---------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLK 162 (556)
T ss_dssp ----HHHHHHHTT-----HHHHHHHHHHHHHHHHH-H---------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGG
T ss_pred ----HHHHHHHHhccc--HHHHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHh
Confidence 557899998742 2222222233332333332 234555555554 5677788888876643322
Q ss_pred cCch-hHH-HHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113 249 SCRD-KYR-SSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 249 ~~~~-~~~-~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 291 (339)
.-+. ... ..=.+.-++..+-+.+.+.+..--.....+|..+..
T Consensus 163 ~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~ 207 (556)
T PF05918_consen 163 PLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI 207 (556)
T ss_dssp GS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred hCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence 1111 111 011112233444455666555444555566666654
No 180
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=94.70 E-value=0.59 Score=43.93 Aligned_cols=211 Identities=17% Similarity=0.155 Sum_probs=115.6
Q ss_pred CChHHHHHHhccCCHHHHHHHHHHHHHhccC----CcchhhHHhhc-C-ChHHHHHhhcC---CChhHHHHHHHHHHHHh
Q 048113 39 GIIAPLISMLCSQDYEAIEAALLSLLSLACG----SERNKIRIVKS-G-IVPVLLEVLQC---QSTTLIELTVAAMLILS 109 (339)
Q Consensus 39 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~----~~~~~~~i~~~-g-~i~~Lv~lL~~---~~~~~~~~a~~~L~nLs 109 (339)
.....+...+.+..-..|+.|+++++|++.- -|..+..-... | .+..+++.-.. ....++.++.++|.|++
T Consensus 433 ~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnll 512 (728)
T KOG4535|consen 433 DAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLL 512 (728)
T ss_pred HHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHH
Confidence 3334444555555667899999999998751 22211111111 1 13333332221 23568889999999988
Q ss_pred cCcc----chHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChH-HH-HhcCcHHHHHHHh
Q 048113 110 SCLE----NKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLIS-PI-VSSGVTYCLLQLI 183 (339)
Q Consensus 110 ~~~~----~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~-~i-~~~g~i~~Lv~ll 183 (339)
..-+ +-......+.+..+.+---.+ ...+++-+++.++.||-+++..+- .. ...-+++.|..++
T Consensus 513 Qvlq~i~~~~~~e~~~~~~~~l~~~v~~~----------~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv 582 (728)
T KOG4535|consen 513 QFLQPIEKPTFAEIIEESIQALISTVLTE----------AAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLV 582 (728)
T ss_pred HHHHHhhhccHHHHHHHHHHhcccceecc----------cccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHH
Confidence 5221 111112234444444433232 578899999999999988776532 11 2224678888888
Q ss_pred hccccCchHHHHHHHHHHHhhcCCHhhh-HHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcC
Q 048113 184 HSSEKSSGLTEKAIALLENIVSSSEDAL-QEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEG 262 (339)
Q Consensus 184 ~~~~~~~~~~~~a~~~L~n~l~~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g 262 (339)
.+.. +-+++.+|.++|. . ...+++. ..+. =-...++..|... .+.......+.+.. .+..+..
T Consensus 583 ~~~~-NFKVRi~AA~aL~-v-p~~re~~~d~~~---Lsw~~lv~aLi~s----~~~v~f~eY~~~Ds----l~~q~c~-- 646 (728)
T KOG4535|consen 583 TSCK-NFKVRIRAAAALS-V-PGKREQYGDQYA---LSWNALVTALQKS----EDTIDFLEYKYCDS----LRTQICQ-- 646 (728)
T ss_pred HHhc-cceEeehhhhhhc-C-CCCcccchhHHh---HHHHHHHHHHHHH----HHHHHHHHHHHHHH----HHHHHHH--
Confidence 8864 6889999999998 3 3332211 1111 1234445544321 12233444555522 4455544
Q ss_pred ChHHHHHhhhcCC
Q 048113 263 VMPGLLQLSVDGT 275 (339)
Q Consensus 263 ~i~~L~~ll~~~~ 275 (339)
++..+..+.++++
T Consensus 647 av~hll~la~Ssd 659 (728)
T KOG4535|consen 647 ALIHLLSLASSSD 659 (728)
T ss_pred HHHHHHHHhhccc
Confidence 5666666666654
No 181
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.58 E-value=0.2 Score=48.61 Aligned_cols=135 Identities=19% Similarity=0.197 Sum_probs=90.7
Q ss_pred cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHH
Q 048113 38 RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLE 117 (339)
Q Consensus 38 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~ 117 (339)
+|+--.++.=|.+.-.++|..|...++.|+...|..... .+..|+.+++.+...+|..|..+|..++..-.
T Consensus 372 sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~---- 442 (823)
T KOG2259|consen 372 SGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVHLA---- 442 (823)
T ss_pred ccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe----
Confidence 333445555566667799999999999999966654432 46779999999999999999999999886522
Q ss_pred HHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHH
Q 048113 118 IASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAI 197 (339)
Q Consensus 118 i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~ 197 (339)
....-++.+..-|.. .++++++..-..|.+.=..+.++-.+ ++..|.+.|..++++.+-...|+
T Consensus 443 -i~eeql~~il~~L~D-----------~s~dvRe~l~elL~~~~~~d~~~i~m----~v~~lL~~L~kyPqDrd~i~~cm 506 (823)
T KOG2259|consen 443 -IREEQLRQILESLED-----------RSVDVREALRELLKNARVSDLECIDM----CVAHLLKNLGKYPQDRDEILRCM 506 (823)
T ss_pred -ecHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHhcCCCcHHHHHH----HHHHHHHHhhhCCCCcHHHHHHH
Confidence 233457778888877 68888887777776654444444444 24445555554433333333333
No 182
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.54 E-value=0.63 Score=43.99 Aligned_cols=140 Identities=16% Similarity=0.161 Sum_probs=97.5
Q ss_pred CCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcch-------------hh
Q 048113 11 NGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERN-------------KI 75 (339)
Q Consensus 11 s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~-------------~~ 75 (339)
..+...+..+...+..+++. .|..=.....+..|+.++++ +++...|++.+..+..+.+.. |+
T Consensus 241 ~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQ 318 (415)
T PF12460_consen 241 SEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQ 318 (415)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhH
Confidence 34556677788888888776 33332334567777888766 778889999999888842322 22
Q ss_pred HHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHh-cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHH
Q 048113 76 RIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIAS-SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAI 154 (339)
Q Consensus 76 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~ 154 (339)
++.. ..+|.|++.....+.+.+..-+.+|.++..+-+......+ ...+|.|++-|.. .+.+++..++
T Consensus 319 R~F~-~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~-----------~~~~v~~s~L 386 (415)
T PF12460_consen 319 RFFT-QVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSL-----------PDADVLLSSL 386 (415)
T ss_pred HHHH-HHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC-----------CCHHHHHHHH
Confidence 2222 2567777777777777888888899888875553333333 3478888888877 7888999999
Q ss_pred HHHHhhcCCC
Q 048113 155 ATLHNLSTCH 164 (339)
Q Consensus 155 ~~L~nLs~~~ 164 (339)
.+|..+....
T Consensus 387 ~tL~~~l~~~ 396 (415)
T PF12460_consen 387 ETLKMILEEA 396 (415)
T ss_pred HHHHHHHHcC
Confidence 9999987654
No 183
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.22 E-value=1.9 Score=42.50 Aligned_cols=106 Identities=16% Similarity=0.111 Sum_probs=79.0
Q ss_pred cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHh
Q 048113 80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHN 159 (339)
Q Consensus 80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~n 159 (339)
.|.+..+++...+++..+|...+..|..++..........-.+..+++..-+.. ..+.+|..|+.+|+.
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~D-----------rep~VRiqAv~aLsr 152 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKD-----------REPNVRIQAVLALSR 152 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhc-----------cCchHHHHHHHHHHH
Confidence 466777788888889999999999999988755445555556777888777767 689999999999999
Q ss_pred hcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHH
Q 048113 160 LSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLE 201 (339)
Q Consensus 160 Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~ 201 (339)
+-.++.+- +..++..++.+++++ +++++++.++..+.
T Consensus 153 lQ~d~~de----e~~v~n~l~~liqnD-pS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 153 LQGDPKDE----ECPVVNLLKDLIQND-PSDEVRRAALSNIS 189 (892)
T ss_pred HhcCCCCC----cccHHHHHHHHHhcC-CcHHHHHHHHHhhc
Confidence 96433211 134566788888876 47888888866555
No 184
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.19 E-value=1.3 Score=44.73 Aligned_cols=195 Identities=12% Similarity=0.054 Sum_probs=122.4
Q ss_pred HHHHhccCCcchhhHHhhcCChHHHHHhhcCC-ChhHHHHHHHHHHHHhcCccchHHHHhcchH--HHHHHHhcCCCCCC
Q 048113 62 SLLSLACGSERNKIRIVKSGIVPVLLEVLQCQ-STTLIELTVAAMLILSSCLENKLEIASSGAI--QRLVEILNGDLADD 138 (339)
Q Consensus 62 ~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i--~~Lv~ll~~~~~~~ 138 (339)
+|.+.+..+++++..+.+.|++..+..++..- ..+++..++..+.|++...+.+........+ ..+-.++...
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w---- 569 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKW---- 569 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc----
Confidence 78899999999999999999999999999865 5678999999999999765544332221112 2333344441
Q ss_pred CCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhC
Q 048113 139 DNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATC 218 (339)
Q Consensus 139 ~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~ 218 (339)
.+.+.-..|+..|..+..+.+. ....+. +..+...+.+.....+........ .
T Consensus 570 ------~~~ersY~~~siLa~ll~~~~~---~~~~~~-----------------r~~~~~~l~e~i~~~~~~~~~~~~-~ 622 (699)
T KOG3665|consen 570 ------DSIERSYNAASILALLLSDSEK---TTECVF-----------------RNSVNELLVEAISRWLTSEIRVIN-D 622 (699)
T ss_pred ------chhhHHHHHHHHHHHHHhCCCc---Cccccc-----------------hHHHHHHHHHHhhccCccceeehh-h
Confidence 3447778899899888665443 111111 111222222122222222222222 2
Q ss_pred CcHHH-HHHHhhc-CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhh-hcCCHHHHHHHHHHHHH
Q 048113 219 GAIRA-LVETIEE-GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLS-VDGTWRAKNMARDLLLL 288 (339)
Q Consensus 219 g~i~~-Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~A~~~L~~ 288 (339)
..+.+ +..++.. ..+..+-.|++++.++....+. +++.+.+.|+++.+.++. ......++..+...+.+
T Consensus 623 ~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 694 (699)
T KOG3665|consen 623 RSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKE-YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIES 694 (699)
T ss_pred hhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChh-hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence 33333 5555553 4567788899999999988765 788888899999998873 33345556666555543
No 185
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.16 E-value=0.11 Score=29.15 Aligned_cols=29 Identities=28% Similarity=0.279 Sum_probs=25.4
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHHHhcc
Q 048113 264 MPGLLQLSVDGTWRAKNMARDLLLLLRDC 292 (339)
Q Consensus 264 i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 292 (339)
+|.+++++.+.++.+|..|+.+|..+.+.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999888753
No 186
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.09 E-value=3.9 Score=36.03 Aligned_cols=217 Identities=17% Similarity=0.182 Sum_probs=134.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhcc--CCHHHHHHHHHHHHHhccCCcchhhHHhhc
Q 048113 4 MLMDNLLNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCS--QDYEAIEAALLSLLSLACGSERNKIRIVKS 80 (339)
Q Consensus 4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~ 80 (339)
.|=..|.++++..|.+|+..|..+... -+.. ....-+..|+.+..+ +|......++..+..|... ... ..
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~-L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~-~~~-----~~ 75 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF-LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKM-KNF-----SP 75 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh-ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhC-cCC-----Ch
Confidence 455678899999999999999998887 3333 333336777776654 4666777778888877752 221 11
Q ss_pred CChHHHHHhh-cCC-----ChhHHHHHHHHHHHHhcCccchHHHH--hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHH
Q 048113 81 GIVPVLLEVL-QCQ-----STTLIELTVAAMLILSSCLENKLEIA--SSGAIQRLVEILNGDLADDDNSYGRISVQAKID 152 (339)
Q Consensus 81 g~i~~Lv~lL-~~~-----~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~ 152 (339)
+....+++.+ ++- ....|..+...+..+..... ..+. ..+.+..+++.+..+ .||.....
T Consensus 76 ~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~--~~l~~~~~~fv~~~i~~~~gE----------kDPRnLl~ 143 (262)
T PF14500_consen 76 ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR--EALQSMGDDFVYGFIQLIDGE----------KDPRNLLL 143 (262)
T ss_pred hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH--HHHHhchhHHHHHHHHHhccC----------CCHHHHHH
Confidence 1233333332 221 23467777777777765432 2333 245788899998875 78998888
Q ss_pred HHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhcc-------ccCc--hH-HHHHHHHHHHhhcCCHhhhHHHHhhCCcHH
Q 048113 153 AIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSS-------EKSS--GL-TEKAIALLENIVSSSEDALQEIAATCGAIR 222 (339)
Q Consensus 153 a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~-------~~~~--~~-~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~ 222 (339)
+...+..+...=+. ....+.+.+.+..+ ++++ .+ .+.--..|.+-++.++ .+. .-++|
T Consensus 144 ~F~l~~~i~~~~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~----~fa--~~~~p 211 (262)
T PF14500_consen 144 SFKLLKVILQEFDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP----LFA--PFAFP 211 (262)
T ss_pred HHHHHHHHHHhccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH----hhH--HHHHH
Confidence 88888877553221 23445555555331 1111 22 2233344443333333 232 35789
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhhccCc
Q 048113 223 ALVETIEEGSPQCKEHAVAILLLICKSCR 251 (339)
Q Consensus 223 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 251 (339)
.|++-|.++++.++..++.+|...+...+
T Consensus 212 ~LleKL~s~~~~~K~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 212 LLLEKLDSTSPSVKLDSLQTLKACIENYG 240 (262)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999988775543
No 187
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=94.08 E-value=0.38 Score=48.50 Aligned_cols=212 Identities=16% Similarity=0.148 Sum_probs=130.2
Q ss_pred CHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcc-------------hhhHH
Q 048113 13 ERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSER-------------NKIRI 77 (339)
Q Consensus 13 ~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~-------------~~~~i 77 (339)
+.+.+..|...+..+.+. .|..-....+-..++..|++ +++-..|+.++..+..+++. .|+++
T Consensus 787 s~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRf 864 (1030)
T KOG1967|consen 787 SLDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRF 864 (1030)
T ss_pred CcchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHH
Confidence 445566777777777766 44444445566667777766 33333444555444442221 12222
Q ss_pred hhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHH-h-cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHH
Q 048113 78 VKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA-S-SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIA 155 (339)
Q Consensus 78 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~-~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~ 155 (339)
. ...+|.|++.+...+...+..-..+|.+...+-+. +.+. + ....|.|++-|.- .+..++..+.+
T Consensus 865 F-~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~-----------~D~~v~vstl~ 931 (1030)
T KOG1967|consen 865 F-CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSM-----------PDVIVRVSTLR 931 (1030)
T ss_pred H-HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCC-----------CccchhhhHhh
Confidence 2 35789999988865666666666777776654443 3332 2 3467777777777 68889999999
Q ss_pred HHHhhcC-CCCChHHHHhcCcHHHHHHHhhcccc-CchHHHHHHHHHHHhhcC-CHhhhHHHHhhCCcHHHHHHHhhcCC
Q 048113 156 TLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEK-SSGLTEKAIALLENIVSS-SEDALQEIAATCGAIRALVETIEEGS 232 (339)
Q Consensus 156 ~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~-~~~~~~~a~~~L~n~l~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~ 232 (339)
++.-+.. .+.....=++ -.+|.+..+=.+.+. ..-+++.|+.+|. .+.. .|..+-.-.. ..++..|+..|.++.
T Consensus 932 ~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~-aL~~~~P~~~l~~fr-~~Vl~al~k~LdDkK 1008 (1030)
T KOG1967|consen 932 TIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLN-ALTRRLPTKSLLSFR-PLVLRALIKILDDKK 1008 (1030)
T ss_pred hhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHH-HHhccCCCccccccc-HHHHHHhhhccCcHH
Confidence 9887755 3332221111 246666665555421 1567888999998 6666 5554433333 578899999998877
Q ss_pred hHHHHHHHHH
Q 048113 233 PQCKEHAVAI 242 (339)
Q Consensus 233 ~~~~~~a~~~ 242 (339)
..+++.|+.+
T Consensus 1009 RlVR~eAv~t 1018 (1030)
T KOG1967|consen 1009 RLVRKEAVDT 1018 (1030)
T ss_pred HHHHHHHHHH
Confidence 7788888765
No 188
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.03 E-value=8.3 Score=39.66 Aligned_cols=260 Identities=11% Similarity=0.050 Sum_probs=134.9
Q ss_pred CHHHHHHHHHHHHHHHHH-HH----HHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHH
Q 048113 13 ERETQIQAANELGKLSRR-QK----HKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLL 87 (339)
Q Consensus 13 ~~~~~~~a~~~L~~l~~~-~~----~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv 87 (339)
++....-|+++++.++.- .+ +...+.=.++-+...++++.-.+|..|++.+..++.- +.+..-.-..+.....
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~--df~d~~~l~~ale~t~ 508 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSI--DFKDPNNLSEALELTH 508 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhc--cCCChHHHHHHHHHHH
Confidence 556677788999888854 11 1222333444445566777778999999999999952 2222222233455666
Q ss_pred Hhhc-CCChhHHHHHHHHHHHHhcCcc-chHHHH--hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH-HhhcC
Q 048113 88 EVLQ-CQSTTLIELTVAAMLILSSCLE-NKLEIA--SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL-HNLST 162 (339)
Q Consensus 88 ~lL~-~~~~~~~~~a~~~L~nLs~~~~-~~~~i~--~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L-~nLs~ 162 (339)
.+|. +.+-.++..|+-+|..+..+.+ .++.+. -.+.++.|+++.+.. ..+.....+..+ +..+.
T Consensus 509 ~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~-----------End~Lt~vme~iV~~fse 577 (1010)
T KOG1991|consen 509 NCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEV-----------ENDDLTNVMEKIVCKFSE 577 (1010)
T ss_pred HHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhc-----------chhHHHHHHHHHHHHHHH
Confidence 6666 5556688888899988776554 344443 245677777777662 333333333222 22221
Q ss_pred -CCCChHHHHhcCcHHHHHHHhhcc----ccCchHHHHHHHHHHH------hhcCCHhhhHHHHhhCCcHHHHHHHhhcC
Q 048113 163 -CHQLISPIVSSGVTYCLLQLIHSS----EKSSGLTEKAIALLEN------IVSSSEDALQEIAATCGAIRALVETIEEG 231 (339)
Q Consensus 163 -~~~~~~~i~~~g~i~~Lv~ll~~~----~~~~~~~~~a~~~L~n------~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~ 231 (339)
-......+++ .......++++.. +.+++=...|.++|.. .+..+++.-+.+- .-+++.+-..|++.
T Consensus 578 ElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le--~~~l~vi~~iL~~~ 654 (1010)
T KOG1991|consen 578 ELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLE--PIVLPVIGFILKND 654 (1010)
T ss_pred hhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHHHHHHHHHHh
Confidence 1112222222 2444556666531 1111222333333331 1122333333332 23556655666666
Q ss_pred ChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113 232 SPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 232 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 291 (339)
-.+.-+.++.....+....++ ....|++ ..+.+.+........--....-+|.|+..
T Consensus 655 i~dfyeE~~ei~~~~t~~~~~-Isp~mW~--ll~li~e~~~~~~~dyf~d~~~~l~N~vt 711 (1010)
T KOG1991|consen 655 ITDFYEELLEIVSSLTFLSKE-ISPIMWG--LLELILEVFQDDGIDYFTDMMPALHNYVT 711 (1010)
T ss_pred hHHHHHHHHHHHhhhhhhhcc-cCHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHhhhee
Confidence 566667777777666654422 3344443 45555555555444433444445554433
No 189
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=93.82 E-value=0.61 Score=41.15 Aligned_cols=168 Identities=19% Similarity=0.146 Sum_probs=102.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHhcC--ChHHHHHHhcc----CCHHHHHHHHHHHHHhccCCcchhhH
Q 048113 5 LMDNLLNGERETQIQAANELGKLSRR--QKHKLVERG--IIAPLISMLCS----QDYEAIEAALLSLLSLACGSERNKIR 76 (339)
Q Consensus 5 Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g--~i~~Lv~lL~~----~~~~~~~~A~~~L~~Ls~~~~~~~~~ 76 (339)
+...+.+.+++.+.-++..+|-+..+ ....+...+ +...+..++.. ..+..+..++++++|+-. ++..+..
T Consensus 68 ~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~-~~~~~~~ 146 (268)
T PF08324_consen 68 LLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFS-HPPGRQL 146 (268)
T ss_dssp HHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTT-SCCCHHH
T ss_pred HHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhC-CCccHHH
Confidence 34445555556677777777776654 333443322 34444444433 367889999999999999 6888888
Q ss_pred HhhcC--ChHHHHHhhcCC----ChhHHHHHHHHHHHHhcCc-cch-HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHH
Q 048113 77 IVKSG--IVPVLLEVLQCQ----STTLIELTVAAMLILSSCL-ENK-LEIASSGAIQRLVEILNGDLADDDNSYGRISVQ 148 (339)
Q Consensus 77 i~~~g--~i~~Lv~lL~~~----~~~~~~~a~~~L~nLs~~~-~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~ 148 (339)
+.+.. .+...+..+... +..++..++..++|++..- ..+ ..=.....+..++..+.... .+++
T Consensus 147 ~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~---------~d~E 217 (268)
T PF08324_consen 147 LLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREE---------SDEE 217 (268)
T ss_dssp HHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCH---------TSHH
T ss_pred HHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcccc---------CCHH
Confidence 77663 344444444443 5778999999999998411 111 10011224556666443321 5899
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHhc-CcHHHHHHH
Q 048113 149 AKIDAIATLHNLSTCHQLISPIVSS-GVTYCLLQL 182 (339)
Q Consensus 149 ~~~~a~~~L~nLs~~~~~~~~i~~~-g~i~~Lv~l 182 (339)
....++-+|.+|...+.......+. |+-..+-..
T Consensus 218 a~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~ 252 (268)
T PF08324_consen 218 ALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKK 252 (268)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHH
Confidence 9999999999998766666666554 444443333
No 190
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=93.79 E-value=4.1 Score=37.87 Aligned_cols=189 Identities=12% Similarity=0.112 Sum_probs=114.1
Q ss_pred CCChhHHHHHHHHHHHHhcCccch-HHHHhcchHHHHHHHhcCCCCCCCCccCC-CCHHHHHHHHHHHHhhcCCCCChHH
Q 048113 92 CQSTTLIELTVAAMLILSSCLENK-LEIASSGAIQRLVEILNGDLADDDNSYGR-ISVQAKIDAIATLHNLSTCHQLISP 169 (339)
Q Consensus 92 ~~~~~~~~~a~~~L~nLs~~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~-~~~~~~~~a~~~L~nLs~~~~~~~~ 169 (339)
..+..-+..|..+|.+.-...++. ....-..-++.+++.++.+-. .....+. .+..+...|+++|..+-.+++....
T Consensus 4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~-~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~ 82 (372)
T PF12231_consen 4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDIS-SSSSKGDPFDSRLVIQALKLLGFFLYHPEIVST 82 (372)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHh-cccCCCCCcchHHHHHHHHHHHHHHccHHHHhh
Confidence 445566777777887765433322 111123345566665554211 0011111 3677888999999998877776655
Q ss_pred HHhc--C-cHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc-----CChHHHHHHHH
Q 048113 170 IVSS--G-VTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE-----GSPQCKEHAVA 241 (339)
Q Consensus 170 i~~~--g-~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~a~~ 241 (339)
+-+. . .+...+..+.++..+..+....+.+|. .-.-.+ .+.. ...+..++..+.. ++..+....+.
T Consensus 83 l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls-~Q~f~~----~~~~-~~~~~~l~~~l~~i~~~~~s~si~~erL~ 156 (372)
T PF12231_consen 83 LSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLS-DQKFSP----KIMT-SDRVERLLAALHNIKNRFPSKSIISERLN 156 (372)
T ss_pred CChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-cCCCCC----cccc-hhhHHHHHHHHHHhhccCCchhHHHHHHH
Confidence 5443 1 456666777665445567777777777 322221 2322 3455555555432 45667777888
Q ss_pred HHHHhhccCchhHHHHHHh-c-CChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113 242 ILLLICKSCRDKYRSSILK-E-GVMPGLLQLSVDGTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 242 ~L~~l~~~~~~~~~~~~~~-~-g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 291 (339)
++.++....+ +.|.+ . ..+|.++..+-+....++.+|..++..+..
T Consensus 157 i~~~ll~q~p----~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~ 204 (372)
T PF12231_consen 157 IYKRLLSQFP----QQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKK 204 (372)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 9999886543 34444 3 389999988888888998888887766654
No 191
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.59 E-value=5.7 Score=41.59 Aligned_cols=229 Identities=13% Similarity=0.106 Sum_probs=126.7
Q ss_pred cCCCHHHHHHHHHHHHHHHHH--HHHHHHh--cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCc-chhhHHhhcCChH
Q 048113 10 LNGERETQIQAANELGKLSRR--QKHKLVE--RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSE-RNKIRIVKSGIVP 84 (339)
Q Consensus 10 ~s~~~~~~~~a~~~L~~l~~~--~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~-~~~~~i~~~g~i~ 84 (339)
++.+..+|.++-+.|..++.. ......+ ..+...|..-.++.+...+..++.+|..|-...+ ++...+ ..-+.+
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i-~k~I~E 742 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI-PKLIPE 742 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHH
Confidence 355888999999999998875 2222221 2233344445555566778888888887776433 222222 222233
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHhc----CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhh
Q 048113 85 VLLEVLQCQSTTLIELTVAAMLILSS----CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNL 160 (339)
Q Consensus 85 ~Lv~lL~~~~~~~~~~a~~~L~nLs~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nL 160 (339)
.++.+ ...+...+..|..+|..+.. .++..+. ....+...+.++...... +.+......+-++..+
T Consensus 743 vIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~g-------d~~~~~as~Ivai~~i 812 (1176)
T KOG1248|consen 743 VILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVG-------DSTRVVASDIVAITHI 812 (1176)
T ss_pred HHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcc-------cHHHHHHHHHHHHHHH
Confidence 33333 56677888999888888762 1111111 122455556555441100 2222222224444444
Q ss_pred cCCCC-ChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHH
Q 048113 161 STCHQ-LISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHA 239 (339)
Q Consensus 161 s~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a 239 (339)
..... .-....=.+.++.+...|.+. +.++...|++.+.-.+...|+..-.--. ...++.+..++++....++...
T Consensus 813 l~e~~~~ld~~~l~~li~~V~~~L~s~--sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~d~k~~~r~Kv 889 (1176)
T KOG1248|consen 813 LQEFKNILDDETLEKLISMVCLYLASN--SREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSHDHKIKVRKKV 889 (1176)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHHhhhHHHHHHH
Confidence 33221 111111123455555556654 5789999999998445555654322222 2477888888877777788777
Q ss_pred HHHHHHhhccCch
Q 048113 240 VAILLLICKSCRD 252 (339)
Q Consensus 240 ~~~L~~l~~~~~~ 252 (339)
-..+-.|+...+.
T Consensus 890 r~LlekLirkfg~ 902 (1176)
T KOG1248|consen 890 RLLLEKLIRKFGA 902 (1176)
T ss_pred HHHHHHHHHHhCH
Confidence 7777777765444
No 192
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.59 E-value=0.89 Score=38.49 Aligned_cols=147 Identities=17% Similarity=0.060 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCC-----ChhHHHHHHHHHHHHhcCccc--hHHHHhcchHHHH
Q 048113 55 AIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQ-----STTLIELTVAAMLILSSCLEN--KLEIASSGAIQRL 127 (339)
Q Consensus 55 ~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~nLs~~~~~--~~~i~~~g~i~~L 127 (339)
-..+|+..|..++. .|+.|..+.++-.--.+-+.|... -+.++.-+++.+..|..+++- ...+.....+|.+
T Consensus 116 RvcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 116 RVCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred HHHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 34578888888999 599999999887655555555332 245788899999999976542 3444577899999
Q ss_pred HHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhc-C-------cHHHHHHHhhccccCchHHHHHHHH
Q 048113 128 VEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSS-G-------VTYCLLQLIHSSEKSSGLTEKAIAL 199 (339)
Q Consensus 128 v~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~-g-------~i~~Lv~ll~~~~~~~~~~~~a~~~ 199 (339)
++++.. ++...+..|+..+..+-.++.+-..+++. . .+..++.-+.+. .+..+..+++++
T Consensus 195 LrIme~-----------gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~-~~~RLlKh~iRc 262 (315)
T COG5209 195 LRIMEL-----------GSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSL-GSTRLLKHAIRC 262 (315)
T ss_pred HHHHHh-----------hhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHHHHHHH
Confidence 999999 78888888888888887788777776664 2 222333333332 246778888877
Q ss_pred HHHhhcCCHhhhHHHH
Q 048113 200 LENIVSSSEDALQEIA 215 (339)
Q Consensus 200 L~n~l~~~~~~~~~i~ 215 (339)
-- -++..++.|..+.
T Consensus 263 Yl-RLsd~p~aR~lL~ 277 (315)
T COG5209 263 YL-RLSDKPHARALLS 277 (315)
T ss_pred he-eecCCHhHHHHHh
Confidence 77 5777777776553
No 193
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.47 E-value=6.4 Score=39.88 Aligned_cols=219 Identities=14% Similarity=0.121 Sum_probs=121.8
Q ss_pred CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHH
Q 048113 93 QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIV 171 (339)
Q Consensus 93 ~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~ 171 (339)
+-+.++..++..|..+......+..+...+.+...+..+++ .++-+--+|+..+..||. .++
T Consensus 739 ~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkd-----------edsyvyLnaI~gv~~Lcevy~e------ 801 (982)
T KOG4653|consen 739 DQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKD-----------EDSYVYLNAIRGVVSLCEVYPE------ 801 (982)
T ss_pred CcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcc-----------cCceeeHHHHHHHHHHHHhcch------
Confidence 33457888888888888766666777778888889999988 677777788887777775 333
Q ss_pred hcCcHHHHHHH-hhccccC-chHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhcc
Q 048113 172 SSGVTYCLLQL-IHSSEKS-SGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKS 249 (339)
Q Consensus 172 ~~g~i~~Lv~l-l~~~~~~-~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 249 (339)
..+|.|... ....... .+.+...-.++.+.+-..++-..... +-.+......+++++...+.-+++++.++|.-
T Consensus 802 --~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~--~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 802 --DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK--AVLINTFLSGVREPDHEFRASSLANLGQLCQL 877 (982)
T ss_pred --hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH--HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHH
Confidence 355666653 2222111 22233333444422222222111111 11233334444555555677788888888864
Q ss_pred CchhHHHHHHhcCChHHHHHhhh-cCCHHHHHHHHHHHHHHhccCCCcchhhhhh----hHHHHHHHHHHHhcC-cccch
Q 048113 250 CRDKYRSSILKEGVMPGLLQLSV-DGTWRAKNMARDLLLLLRDCSSFGSRSKQLK----NELVEQIMQEIDAEG-DTVAG 323 (339)
Q Consensus 250 ~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~-~~~~~ 323 (339)
..-.+...+.+ .+..++.+.+ +++..+|+.|+.++..+-.+-.+ .--.+- -+..+.+..-+..+. |.++.
T Consensus 878 ~a~~vsd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~--dlLpilr~~l~Dl~~tl~~~vr~~~dd~~kl 953 (982)
T KOG4653|consen 878 LAFQVSDFFHE--VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGE--DLLPILRLLLIDLDETLLSYVRQHDDDGLKL 953 (982)
T ss_pred HhhhhhHHHHH--HHHHHHHHHccCCchhhHHHHHHHHHHHHhccch--hhHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 21112223333 4555555544 56788899999999888765431 011111 123333333333333 44577
Q ss_pred HHHHHHHHHHHHh
Q 048113 324 TTLRLVEEMIAKL 336 (339)
Q Consensus 324 ~a~~~l~~~v~~~ 336 (339)
.|...+.++-+.|
T Consensus 954 haql~leei~a~l 966 (982)
T KOG4653|consen 954 HAQLCLEEIQAAL 966 (982)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776655
No 194
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.01 E-value=7.1 Score=35.70 Aligned_cols=163 Identities=14% Similarity=0.074 Sum_probs=119.4
Q ss_pred HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCChH-HHHhc--Cc-HHHHHHHhhccccCc
Q 048113 116 LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQLIS-PIVSS--GV-TYCLLQLIHSSEKSS 190 (339)
Q Consensus 116 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~~~-~i~~~--g~-i~~Lv~ll~~~~~~~ 190 (339)
..+...+.+..|+..|.. -+-+.+..+..+..++-.. ..++. ..++. .- -+.|..++..+ ..+
T Consensus 70 ~Ei~~~dll~~Li~~L~~-----------L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy-~~~ 137 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPK-----------LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY-ENP 137 (335)
T ss_dssp HHHHHHTHHHHHHHTGGG-----------S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG-GST
T ss_pred HHHHHhCHHHHHHHHhhh-----------CCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh-cCc
Confidence 345567899999999988 7999999999999999763 34433 22221 22 34444444444 467
Q ss_pred hHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhc---CChHHH
Q 048113 191 GLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKE---GVMPGL 267 (339)
Q Consensus 191 ~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~---g~i~~L 267 (339)
++...|-.+|. .|..++...+.+.. ...+..+.+.++.++-++...|...+..+-..... ........ ......
T Consensus 138 dial~~g~mlR-ec~k~e~l~~~iL~-~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~-~~a~fl~~n~d~ff~~~ 214 (335)
T PF08569_consen 138 DIALNCGDMLR-ECIKHESLAKIILY-SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKK-LVAEFLSNNYDRFFQKY 214 (335)
T ss_dssp TTHHHHHHHHH-HHTTSHHHHHHHHT-SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHH-HHHHHHHHTHHHHHHHH
T ss_pred cccchHHHHHH-HHHhhHHHHHHHhC-cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHH
Confidence 88899999999 89999888888887 78899999999999988888898888876554433 44444443 467788
Q ss_pred HHhhhcCCHHHHHHHHHHHHHHhccC
Q 048113 268 LQLSVDGTWRAKNMARDLLLLLRDCS 293 (339)
Q Consensus 268 ~~ll~~~~~~~~~~A~~~L~~l~~~~ 293 (339)
..++.+++--+++.++.+|.-|--.+
T Consensus 215 ~~Ll~s~NYvtkrqslkLL~ellldr 240 (335)
T PF08569_consen 215 NKLLESSNYVTKRQSLKLLGELLLDR 240 (335)
T ss_dssp HHHCT-SSHHHHHHHHHHHHHHHHSG
T ss_pred HHHccCCCeEeehhhHHHHHHHHHch
Confidence 88999999999999999997776544
No 195
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=92.99 E-value=7 Score=36.96 Aligned_cols=123 Identities=20% Similarity=0.227 Sum_probs=83.6
Q ss_pred cHHHHHHHhhccccCchHHHHHHHHHHHhhcCC-Hhh-------------hHHHHhhCCcHHHHHHHhhcCChHHHHHHH
Q 048113 175 VTYCLLQLIHSSEKSSGLTEKAIALLENIVSSS-EDA-------------LQEIAATCGAIRALVETIEEGSPQCKEHAV 240 (339)
Q Consensus 175 ~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~-~~~-------------~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~ 240 (339)
.++.|++++.+ +++-..+...+. .+..+ ++. |+++.. ..+|.|++..+..+...+.+-.
T Consensus 272 ~~~~L~~lL~~----~~~g~~aA~~f~-il~~d~~~~l~~~~~a~vklLykQR~F~--~~~p~L~~~~~~~~~~~k~~yL 344 (415)
T PF12460_consen 272 LLDKLLELLSS----PELGQQAAKAFG-ILLSDSDDVLNKENHANVKLLYKQRFFT--QVLPKLLEGFKEADDEIKSNYL 344 (415)
T ss_pred HHHHHHHHhCC----hhhHHHHHHHHh-hHhcCcHHhcCccccchhhhHHhHHHHH--HHHHHHHHHHhhcChhhHHHHH
Confidence 45667787776 355566666666 44444 322 333432 4678888888877777888889
Q ss_pred HHHHHhhccCchhHHHHHHh--cCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHH
Q 048113 241 AILLLICKSCRDKYRSSILK--EGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQE 313 (339)
Q Consensus 241 ~~L~~l~~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~ 313 (339)
.+|..+..+-|. +.+.. ...+|.|++-+...++.++..+..+|..+....+ ....+.+..++..
T Consensus 345 ~ALs~ll~~vP~---~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~------~~i~~hl~sLI~~ 410 (415)
T PF12460_consen 345 TALSHLLKNVPK---SVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP------ELISEHLSSLIPR 410 (415)
T ss_pred HHHHHHHhhCCH---HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH------HHHHHHHHHHHHH
Confidence 999999877654 22322 4588888888888999999999999988887542 2334455555544
No 196
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=92.90 E-value=8 Score=36.04 Aligned_cols=192 Identities=12% Similarity=0.075 Sum_probs=116.9
Q ss_pred HHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCC------------------------h------hHHHHHHHHH--
Q 048113 58 AALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQS------------------------T------TLIELTVAAM-- 105 (339)
Q Consensus 58 ~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~------------------------~------~~~~~a~~~L-- 105 (339)
.|.+.|-.+....+..-..+.+.||+..++..|..+- . --|...+..|
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk 82 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK 82 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH
Confidence 3555565565545555667777788877776653210 0 0122333333
Q ss_pred --HHHhc-CccchHH---HHh-cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCChHHHHhcCcHH
Q 048113 106 --LILSS-CLENKLE---IAS-SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQLISPIVSSGVTY 177 (339)
Q Consensus 106 --~nLs~-~~~~~~~---i~~-~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~ 177 (339)
..+.. ....... +.+ ......|..++++... -.+.+-..|+.++.....+ |..-..+.++|.++
T Consensus 83 ~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~--------FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~ 154 (379)
T PF06025_consen 83 FLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEV--------FGPSVFSLAINIVSDFIHNEPTSFSILQEAGLID 154 (379)
T ss_pred HHHHHhccCCCcccccccccchhhHHHHHHHHHhCccc--------cchHHHHHHHHHHHHHHhcCCchhHHHHHcCChH
Confidence 33333 2222222 334 4556677777777421 3577888899999999885 45567778889999
Q ss_pred HHHHHhh-cc-ccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCC--hH-----HHHHHHHHHHHhhc
Q 048113 178 CLLQLIH-SS-EKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGS--PQ-----CKEHAVAILLLICK 248 (339)
Q Consensus 178 ~Lv~ll~-~~-~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~--~~-----~~~~a~~~L~~l~~ 248 (339)
.+++.+. .. .++.++...--.++. .+|-+..+.+.+.+ .+.++.+++++.++. .. .-...-..+-.|.+
T Consensus 155 ~~L~~i~~~~i~~s~e~l~~lP~~l~-AicLN~~Gl~~~~~-~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~R 232 (379)
T PF06025_consen 155 AFLDAITAKGILPSSEVLTSLPNVLS-AICLNNRGLEKVKS-SNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMR 232 (379)
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHh-HHhcCHHHHHHHHh-cChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHc
Confidence 9999988 43 234555555556777 67789999999987 799999999997642 11 11122234455666
Q ss_pred cCchhHHHHHHh
Q 048113 249 SCRDKYRSSILK 260 (339)
Q Consensus 249 ~~~~~~~~~~~~ 260 (339)
+.+. .|..+.+
T Consensus 233 H~p~-Lk~~i~~ 243 (379)
T PF06025_consen 233 HHPS-LKPDIID 243 (379)
T ss_pred cCHH-HHHHHHH
Confidence 6543 6665544
No 197
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.57 E-value=6.1 Score=39.39 Aligned_cols=99 Identities=17% Similarity=0.114 Sum_probs=65.2
Q ss_pred CcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc-CChHHHHHHHHHHHHhhccCch
Q 048113 174 GVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE-GSPQCKEHAVAILLLICKSCRD 252 (339)
Q Consensus 174 g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~ 252 (339)
++|..|++.--++ .+.++++.|..+|+ .++..+ ....+..|++|.. -++-++--++.+|.-.|...+.
T Consensus 554 kair~lLh~aVsD-~nDDVrRaAVialG-FVl~~d---------p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~ 622 (929)
T KOG2062|consen 554 KAIRRLLHVAVSD-VNDDVRRAAVIALG-FVLFRD---------PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL 622 (929)
T ss_pred hhHHHhhcccccc-cchHHHHHHHHHhe-eeEecC---------hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc
Confidence 4667777774443 25788888888888 443221 2345677777764 4788888888888887776443
Q ss_pred hHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113 253 KYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 253 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 291 (339)
++ ++..|-.+..+...=+|+.|+-.+.++--
T Consensus 623 --~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 623 --KE------AINLLEPLTSDPVDFVRQGALIALAMIMI 653 (929)
T ss_pred --HH------HHHHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence 33 34455555666667788888888877754
No 198
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.42 E-value=4.2 Score=41.10 Aligned_cols=175 Identities=16% Similarity=0.126 Sum_probs=115.1
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChH
Q 048113 7 DNLLNGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVP 84 (339)
Q Consensus 7 ~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~ 84 (339)
..+.++-+.+|-.++..|+.+.++ ....+...+++...+.+|++.++-+--+|.+.+..||.-. ....+|
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy--------~e~il~ 805 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY--------PEDILP 805 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc--------chhhHH
Confidence 344566677899999999999996 4555667899999999999999999999999888888732 234567
Q ss_pred HHHHhhcCCC----hhHHHHHHHHHHHHhcCcc-chHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHh
Q 048113 85 VLLEVLQCQS----TTLIELTVAAMLILSSCLE-NKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHN 159 (339)
Q Consensus 85 ~Lv~lL~~~~----~~~~~~a~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~n 159 (339)
.|...-.+.. .+.+...-.++.++...-. -.....+ -.+...++..++ .+...|..++..+.+
T Consensus 806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvre-----------pd~~~RaSS~a~lg~ 873 (982)
T KOG4653|consen 806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVRE-----------PDHEFRASSLANLGQ 873 (982)
T ss_pred HHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCC-----------chHHHHHhHHHHHHH
Confidence 7777433321 2333344467777664221 1111111 345666666665 677789999999999
Q ss_pred hcCCCC--ChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhh
Q 048113 160 LSTCHQ--LISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIV 204 (339)
Q Consensus 160 Ls~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l 204 (339)
||.-.. .-..+.+ ++..++.+.+.+ ++..+++.|+..+...+
T Consensus 874 Lcq~~a~~vsd~~~e--v~~~Il~l~~~d-~s~~vRRaAv~li~~lL 917 (982)
T KOG4653|consen 874 LCQLLAFQVSDFFHE--VLQLILSLETTD-GSVLVRRAAVHLLAELL 917 (982)
T ss_pred HHHHHhhhhhHHHHH--HHHHHHHHHccC-CchhhHHHHHHHHHHHH
Confidence 987322 2223333 455566666543 46788899999888333
No 199
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=92.31 E-value=8.9 Score=36.42 Aligned_cols=282 Identities=12% Similarity=0.067 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC-----CcchhhHHhhcCChHH
Q 048113 14 RETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACG-----SERNKIRIVKSGIVPV 85 (339)
Q Consensus 14 ~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-----~~~~~~~i~~~g~i~~ 85 (339)
...|.++...|..++.. .|..+.+. ...+..-+....+.++..++..+..+-.+ .|+..+.=..-|..-.
T Consensus 269 s~~rle~~qvl~~~a~~~~~~~~~~~~l--~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~ 346 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYFSMTQAYLMEL--GRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT 346 (728)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence 35788999999988886 44444432 23334455667899999999988777652 2222222222221111
Q ss_pred HH------H-hhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113 86 LL------E-VLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH 158 (339)
Q Consensus 86 Lv------~-lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~ 158 (339)
+. . .-++..+..+..++.++.+++......- ..|--..+.-++.... .+.+.-++..|.+++.
T Consensus 347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~l---pn~~~T~~~~Fl~GC~-------d~~~~lv~~aA~Ra~~ 416 (728)
T KOG4535|consen 347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNL---PNDRQTLCITFLLGCN-------DSKNRLVKAAASRALG 416 (728)
T ss_pred HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCC---CCcchhhhHHHHhccc-------chHHHHHHHHHHhhce
Confidence 11 0 1122234567777777777753211100 0110011111221110 0045556777887777
Q ss_pred hhcCCCCChHHH-HhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhc-----CCHhh---hHHHHhhCCcHHHHHHHhh
Q 048113 159 NLSTCHQLISPI-VSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVS-----SSEDA---LQEIAATCGAIRALVETIE 229 (339)
Q Consensus 159 nLs~~~~~~~~i-~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~-----~~~~~---~~~i~~~~g~i~~Lv~lL~ 229 (339)
-+..++..+... .-..+...+...+.+. .-..++++.++++| ++ ..|.. ..++.. -.+..+++.-.
T Consensus 417 VyVLHp~lr~d~~fv~~aa~~il~sl~d~--~ln~r~Kaawtlgn-ITdAL~~~~Ps~~s~~eR~sg--~ll~~~~~~A~ 491 (728)
T KOG4535|consen 417 VYVLHPCLRQDVIFVADAANAILMSLEDK--SLNVRAKAAWSLGN-ITDALIVNMPTPDSFQERFSG--LLLLKMLRSAI 491 (728)
T ss_pred eEEeccchhhhHHHHHHHHHHHHHHhhhH--hHhHHHHHHHHhhh-hHHHHHcCCCCchHHHHHHHH--HHHHHHHHHHH
Confidence 666666665443 2334555555556552 35667888888884 33 22221 122211 12333333222
Q ss_pred ---cCChHHHHHHHHHHHHhhccCch----hHHHHHHhcCChHHHH-HhhhcCCHHHHHHHHHHHHHHhccCCCcchhhh
Q 048113 230 ---EGSPQCKEHAVAILLLICKSCRD----KYRSSILKEGVMPGLL-QLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQ 301 (339)
Q Consensus 230 ---~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~~~g~i~~L~-~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~ 301 (339)
....+++.++..+|.|+...-.+ ..++ ...|.+..+. ...-.+..++|=+|+.++.||-++..+..+..-
T Consensus 492 ~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e--~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~ 569 (728)
T KOG4535|consen 492 EASADKDKVKSNAVRALGNLLQFLQPIEKPTFAE--IIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAP 569 (728)
T ss_pred HhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHH--HHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCC
Confidence 13467889999999888653111 1111 1223333332 223456788999999999999998766334433
Q ss_pred hhhHHHHHHHHHH
Q 048113 302 LKNELVEQIMQEI 314 (339)
Q Consensus 302 ~~~~~~~~i~~~~ 314 (339)
.....+..+...+
T Consensus 570 wA~~~F~~L~~Lv 582 (728)
T KOG4535|consen 570 WASQAFNALTSLV 582 (728)
T ss_pred chHHHHHHHHHHH
Confidence 4445555555444
No 200
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.18 E-value=0.8 Score=38.76 Aligned_cols=145 Identities=16% Similarity=0.039 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhcc---C--CHHHHHHHHHHHHHhccCCcch-hhHHhhcCChHHHHH
Q 048113 17 QIQAANELGKLSRR--QKHKLVERGIIAPLISMLCS---Q--DYEAIEAALLSLLSLACGSERN-KIRIVKSGIVPVLLE 88 (339)
Q Consensus 17 ~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~---~--~~~~~~~A~~~L~~Ls~~~~~~-~~~i~~~g~i~~Lv~ 88 (339)
...|+..|.-++.+ .+..|.++..--.+-.+|.. . .+.+|..++..++.|.+++.+. -..+....++|..++
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 45566667667776 78888877654444455532 2 4468889999999999954443 334455699999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhcCccchHHHHh--------cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhh
Q 048113 89 VLQCQSTTLIELTVAAMLILSSCLENKLEIAS--------SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNL 160 (339)
Q Consensus 89 lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~--------~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nL 160 (339)
+.+.+++--+..|+.++..+..++.+-+.+.. ......++..+-+. ......+.++++-..|
T Consensus 197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~----------~~~RLlKh~iRcYlRL 266 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSL----------GSTRLLKHAIRCYLRL 266 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------cchhHHHHHHHHheee
Confidence 99999888888888888888887776554442 23444555544442 6777888899998888
Q ss_pred cCCCCChHHHH
Q 048113 161 STCHQLISPIV 171 (339)
Q Consensus 161 s~~~~~~~~i~ 171 (339)
|.++..|..+.
T Consensus 267 sd~p~aR~lL~ 277 (315)
T COG5209 267 SDKPHARALLS 277 (315)
T ss_pred cCCHhHHHHHh
Confidence 88887665543
No 201
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=92.16 E-value=2 Score=37.86 Aligned_cols=176 Identities=18% Similarity=0.146 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHHHhccCCcchhhHHhhcC--ChHHHHHhhcC----CChhHHHHHHHHHHHHhcCccchHHHHhcc--h
Q 048113 52 DYEAIEAALLSLLSLACGSERNKIRIVKSG--IVPVLLEVLQC----QSTTLIELTVAAMLILSSCLENKLEIASSG--A 123 (339)
Q Consensus 52 ~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g--~i~~Lv~lL~~----~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g--~ 123 (339)
.++-+--++..++-+.. ++..-..+...+ ....+...+.. .++..+-.++++++|+-.+...+..+.+.. .
T Consensus 76 p~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~ 154 (268)
T PF08324_consen 76 PPESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSS 154 (268)
T ss_dssp -CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTC
T ss_pred CCccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccch
Confidence 33446677778888888 466655555443 24455554433 356688899999999998888887777543 3
Q ss_pred HHHHHHHhcCCCCCCCCccCCC---CHHHHHHHHHHHHhhcC-CCCCh-HHHHhcCcHHHHHHHhhccccCchHHHHHHH
Q 048113 124 IQRLVEILNGDLADDDNSYGRI---SVQAKIDAIATLHNLST-CHQLI-SPIVSSGVTYCLLQLIHSSEKSSGLTEKAIA 198 (339)
Q Consensus 124 i~~Lv~ll~~~~~~~~~~~~~~---~~~~~~~a~~~L~nLs~-~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~ 198 (339)
+...+.-+... . +..++..++..+.|++. ..+.+ ..=.....+..+++.+.....+++..-.++.
T Consensus 155 i~~~~~~~~~~----------~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv 224 (268)
T PF08324_consen 155 ILELLSSLLSS----------LLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLV 224 (268)
T ss_dssp HHHHCHCCCTT----------S-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred HHHHHHHHhhc----------cccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 44444433331 2 68889999999999975 22222 1111112455566644444346888999999
Q ss_pred HHHHhhcCCHhhhHHHHhhCCcHHHHHHHhh-cCChHHHHHH
Q 048113 199 LLENIVSSSEDALQEIAATCGAIRALVETIE-EGSPQCKEHA 239 (339)
Q Consensus 199 ~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~a 239 (339)
++++++ ..+..........|+-..+-..-+ ..++++++.+
T Consensus 225 AlGtL~-~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~ 265 (268)
T PF08324_consen 225 ALGTLL-SSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVA 265 (268)
T ss_dssp HHHHHH-CCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHh-ccChhHHHHHHHcChHHHHHHHHhcccchHHHHHh
Confidence 999555 444444444432344333333322 2346666544
No 202
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.00 E-value=15 Score=36.95 Aligned_cols=97 Identities=10% Similarity=0.193 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhc----c-----ccCchHHHHHHHHHHHhhcCCHhhhHHHH
Q 048113 145 ISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHS----S-----EKSSGLTEKAIALLENIVSSSEDALQEIA 215 (339)
Q Consensus 145 ~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~----~-----~~~~~~~~~a~~~L~n~l~~~~~~~~~i~ 215 (339)
.+.+++..++.....|+.+.+ +..++.+|+. + ++..+-+..-+.+++ .++.... .+.
T Consensus 329 ~dldvr~Ktldi~ldLvssrN----------vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih-~cav~Fp---~~a 394 (948)
T KOG1058|consen 329 PDLDVRSKTLDIALDLVSSRN----------VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIH-ACAVKFP---EVA 394 (948)
T ss_pred ccccHHHHHHHHHHhhhhhcc----------HHHHHHHHHHHHHhccccccccchHHHHHHHHHHH-HHhhcCh---HHH
Confidence 567777777776666655443 3344444422 1 112333455556666 4443321 222
Q ss_pred hhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHH
Q 048113 216 ATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSI 258 (339)
Q Consensus 216 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 258 (339)
+.+++.|++.+.+.++......+..+.......+. .|..+
T Consensus 395 --atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~-Lr~~i 434 (948)
T KOG1058|consen 395 --ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN-LRASI 434 (948)
T ss_pred --HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch-HHHHH
Confidence 45788999999887765544444444443333322 44443
No 203
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.84 E-value=2.9 Score=43.62 Aligned_cols=143 Identities=13% Similarity=0.105 Sum_probs=101.2
Q ss_pred hHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHH
Q 048113 123 AIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLE 201 (339)
Q Consensus 123 ~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~ 201 (339)
..|-+++.+++++- .++|+.+..|.-+|+.+.. +.+.+.. ..|.|+..|... +++.++-++.-+++
T Consensus 920 f~piv~e~c~n~~~-------~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeks-p~p~IRsN~Vvalg 986 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGL-------FSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKS-PSPRIRSNLVVALG 986 (1251)
T ss_pred HHHHHHHHhcCCCc-------CCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcC-CCceeeecchhecc
Confidence 45556666655421 1578999999999998843 4443332 478899999865 36777888877777
Q ss_pred HhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHH
Q 048113 202 NIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNM 281 (339)
Q Consensus 202 n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~ 281 (339)
-++.... .+++ -.-+.|-..|.+.++.+++.|..+|..|-.. .++.-.|.++.+...+.+++++++..
T Consensus 987 -Dlav~fp---nlie--~~T~~Ly~rL~D~~~~vRkta~lvlshLILn------dmiKVKGql~eMA~cl~D~~~~Isdl 1054 (1251)
T KOG0414|consen 987 -DLAVRFP---NLIE--PWTEHLYRRLRDESPSVRKTALLVLSHLILN------DMIKVKGQLSEMALCLEDPNAEISDL 1054 (1251)
T ss_pred -chhhhcc---cccc--hhhHHHHHHhcCccHHHHHHHHHHHHHHHHh------hhhHhcccHHHHHHHhcCCcHHHHHH
Confidence 3432221 2222 3456777888889999999999999999754 35556899999999999999999999
Q ss_pred HHHHHHHHh
Q 048113 282 ARDLLLLLR 290 (339)
Q Consensus 282 A~~~L~~l~ 290 (339)
|-..-.-|+
T Consensus 1055 Ak~FF~Els 1063 (1251)
T KOG0414|consen 1055 AKSFFKELS 1063 (1251)
T ss_pred HHHHHHHhh
Confidence 884444443
No 204
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=91.35 E-value=1.2 Score=35.42 Aligned_cols=73 Identities=15% Similarity=0.300 Sum_probs=63.7
Q ss_pred CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc-CCHHHHHHHHHHHHHHhc
Q 048113 219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD-GTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~A~~~L~~l~~ 291 (339)
.++..|.+-|.++++.++..|+..|-.+..+.+..+...+.....+..|++++.. .++.++.+...++...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 4567777888889999999999999999988888788888889999999999887 788999999999988765
No 205
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=91.35 E-value=10 Score=38.83 Aligned_cols=179 Identities=15% Similarity=0.142 Sum_probs=109.1
Q ss_pred CCChhHHHHHHHHHHHHhcCccchHHHH-hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHH
Q 048113 92 CQSTTLIELTVAAMLILSSCLENKLEIA-SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISP 169 (339)
Q Consensus 92 ~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~ 169 (339)
+++..-+..|+.-+........ +.... ..|.+-.+++....+ .+..+...|+..|..++. .......
T Consensus 264 s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kD----------aN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 264 SKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKD----------ANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred ccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccC----------cchhHHHHHHHHHHHHHHhcchhhHH
Confidence 3445567777777776665444 22211 234455555555443 577788888888888876 3333221
Q ss_pred HHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhcc
Q 048113 170 IVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKS 249 (339)
Q Consensus 170 i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 249 (339)
...+..+.+++-+... ...++..++.++- ..... ... ....+.+...++++++.++..+...+......
T Consensus 333 -~~~~v~p~lld~lkek--k~~l~d~l~~~~d-~~~ns------~~l-~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~ 401 (815)
T KOG1820|consen 333 -YAKNVFPSLLDRLKEK--KSELRDALLKALD-AILNS------TPL-SKMSEAILEALKGKNPQIKGECLLLLDRKLRK 401 (815)
T ss_pred -HHHhhcchHHHHhhhc--cHHHHHHHHHHHH-HHHhc------ccH-HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhh
Confidence 2235777888888764 3455555444444 11111 011 34677888899999999998877776555443
Q ss_pred CchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhcc
Q 048113 250 CRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDC 292 (339)
Q Consensus 250 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 292 (339)
.++.....-.-.+.+|.++....+.+.+++..|..++.-+-+.
T Consensus 402 ~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 402 LGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred cCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 3321112222246899999999999999999999988666543
No 206
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=91.16 E-value=9.7 Score=33.25 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=67.3
Q ss_pred hHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHH
Q 048113 123 AIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLEN 202 (339)
Q Consensus 123 ~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n 202 (339)
.|..|++=+.. ++.-++..++.++..|-+- -.|+.|.+.|.+...++-++..|+.+|+
T Consensus 188 aI~al~~~l~~-----------~SalfrhEvAfVfGQl~s~----------~ai~~L~k~L~d~~E~pMVRhEaAeALG- 245 (289)
T KOG0567|consen 188 AINALIDGLAD-----------DSALFRHEVAFVFGQLQSP----------AAIPSLIKVLLDETEHPMVRHEAAEALG- 245 (289)
T ss_pred HHHHHHHhccc-----------chHHHHHHHHHHHhhccch----------hhhHHHHHHHHhhhcchHHHHHHHHHHH-
Confidence 45566666655 6788888999998887332 2588888888776545666777888888
Q ss_pred hhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhh
Q 048113 203 IVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLIC 247 (339)
Q Consensus 203 ~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 247 (339)
.+.+ ..+++.|.+++.+.++-+++-+..+|-.+-
T Consensus 246 ----------aIa~-e~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 246 ----------AIAD-EDCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred ----------hhcC-HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 3333 578889999999888888888877775543
No 207
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=91.08 E-value=13 Score=34.63 Aligned_cols=132 Identities=10% Similarity=0.136 Sum_probs=92.5
Q ss_pred HHhh-cCChHHHHHhhcCC---ChhHHHHHHHHHHHHhcCccc-hHHHHhcchHHHHHHHhc-CCCCCCCCccCCCCHHH
Q 048113 76 RIVK-SGIVPVLLEVLQCQ---STTLIELTVAAMLILSSCLEN-KLEIASSGAIQRLVEILN-GDLADDDNSYGRISVQA 149 (339)
Q Consensus 76 ~i~~-~g~i~~Lv~lL~~~---~~~~~~~a~~~L~nLs~~~~~-~~~i~~~g~i~~Lv~ll~-~~~~~~~~~~~~~~~~~ 149 (339)
.+.+ ......|..++.+. .+.+-..|+.++..+..+++. -..+.+.|.++.+++.+. .... .+.++
T Consensus 100 nl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~--------~s~e~ 171 (379)
T PF06025_consen 100 NLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGIL--------PSSEV 171 (379)
T ss_pred cccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCC--------CcHHH
Confidence 3445 33455555566665 367888899999999987765 667779999999999887 4211 47788
Q ss_pred HHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCc------hHHHHHHHHHHHhhcCCHhhhHHHHh
Q 048113 150 KIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSS------GLTEKAIALLENIVSSSEDALQEIAA 216 (339)
Q Consensus 150 ~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~------~~~~~a~~~L~n~l~~~~~~~~~i~~ 216 (339)
....-.+|..+|-+..+.+.+.+.+.++.+++++.+.. .- +....--..+-.++..+|.-|..+.+
T Consensus 172 l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~-~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 172 LTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPD-YVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred HHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHH-HHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 88888899999999999999999999999999998742 11 12222223344344556666666654
No 208
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=90.87 E-value=4.5 Score=32.70 Aligned_cols=145 Identities=18% Similarity=0.178 Sum_probs=80.5
Q ss_pred chHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHH
Q 048113 122 GAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLE 201 (339)
Q Consensus 122 g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~ 201 (339)
..++.|.++++++ .+..+|..++++|..|-.-+..+......+. + ..-.. +.........+....
T Consensus 10 ~LL~~L~~iLk~e----------~s~~iR~E~lr~lGilGALDP~~~k~~~~~~-~---~~~~~-~~~~~~~~~~l~~~~ 74 (160)
T PF11865_consen 10 ELLDILLNILKTE----------QSQSIRREALRVLGILGALDPYKHKSIQKSL-D---SKSSE-NSNDESTDISLPMMG 74 (160)
T ss_pred HHHHHHHHHHHhC----------CCHHHHHHHHHHhhhccccCcHHHhcccccC-C---ccccc-cccccchhhHHhhcc
Confidence 4577888999885 6799999999999999664444433222110 0 00000 001121222211111
Q ss_pred HhhcCCHhhhHHHHhhCCcHHHHHHHhhcCC-hHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHH
Q 048113 202 NIVSSSEDALQEIAATCGAIRALVETIEEGS-PQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKN 280 (339)
Q Consensus 202 n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~ 280 (339)
.....++.. - .-++..|+++|++++ ..-+..++.++.++....+.++..-+ ..++|.++..+++.++..++
T Consensus 75 -~~~~~ee~y----~-~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e 146 (160)
T PF11865_consen 75 -ISPSSEEYY----P-TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLRE 146 (160)
T ss_pred -CCCchHHHH----H-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHH
Confidence 111122222 2 346788999999865 44455677777777654333332222 24899999999988877666
Q ss_pred HHHHHHHHH
Q 048113 281 MARDLLLLL 289 (339)
Q Consensus 281 ~A~~~L~~l 289 (339)
.-..-|..|
T Consensus 147 ~~~~qL~~l 155 (160)
T PF11865_consen 147 FYFQQLADL 155 (160)
T ss_pred HHHHHHHHH
Confidence 544444333
No 209
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=90.83 E-value=11 Score=37.27 Aligned_cols=166 Identities=14% Similarity=0.100 Sum_probs=102.3
Q ss_pred HcCCCHHHHHHHHHHHHHHHHH---HHHHHH---hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhc--
Q 048113 9 LLNGERETQIQAANELGKLSRR---QKHKLV---ERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKS-- 80 (339)
Q Consensus 9 L~s~~~~~~~~a~~~L~~l~~~---~~~~i~---~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~-- 80 (339)
+...+++.+.-|+.+||-+..+ +-..+- ....+..++..+. .++..+..++++|.|+-. ++.+++.+...
T Consensus 553 l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~-~~~g~~~~~s~~~ 630 (745)
T KOG0301|consen 553 LLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFS-NPAGRELFMSRLE 630 (745)
T ss_pred HhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhcc-CHHHHHHHHHHHH
Confidence 3344566778888888888876 222222 1335555666555 567888899999999999 58887777654
Q ss_pred CChHHHHHhhcCCChhHHHHHHHHHHHHhc--CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113 81 GIVPVLLEVLQCQSTTLIELTVAAMLILSS--CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH 158 (339)
Q Consensus 81 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~ 158 (339)
-.+..++..=..++..++...+....|++. ...+- +.++.+.+...+.....+ ..+.+....++-||.
T Consensus 631 ~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~------~~d~EA~yR~l~Alg 700 (745)
T KOG0301|consen 631 SILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEP------VDDLEAIYRLLVALG 700 (745)
T ss_pred HHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhccc------chhHHHHHHHHHHHH
Confidence 111222222122345666666666666652 22211 145666666655442100 023345556788889
Q ss_pred hhcCCCCChHHHHhcCcHHHHHHHhhcc
Q 048113 159 NLSTCHQLISPIVSSGVTYCLLQLIHSS 186 (339)
Q Consensus 159 nLs~~~~~~~~i~~~g~i~~Lv~ll~~~ 186 (339)
+|+..+.+...+.+.-.++.+++-+++.
T Consensus 701 tL~t~~~~~~~~A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 701 TLMTVDASVIQLAKNRSVDSIAKKLKEA 728 (745)
T ss_pred hhccccHHHHHHHHhcCHHHHHHHHHHh
Confidence 9998888888888887788888888764
No 210
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=90.70 E-value=1.5 Score=34.49 Aligned_cols=73 Identities=21% Similarity=0.245 Sum_probs=62.3
Q ss_pred CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc------CCHHHHHHHHHHHHHHhc
Q 048113 219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD------GTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~------~~~~~~~~A~~~L~~l~~ 291 (339)
.++..+.+-|+++++.++..|+..|-.+..+.+..+...+...+.+..|++++.. .++.++.+...++..-+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3567788888899999999999999999888877788888889999999999853 468899999999987765
No 211
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=90.54 E-value=12 Score=38.50 Aligned_cols=180 Identities=15% Similarity=0.141 Sum_probs=115.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHH--HHHHhcCChHHHHHHh-ccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRRQK--HKLVERGIIAPLISML-CSQDYEAIEAALLSLLSLACGSERNKIRIVK 79 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~--~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~ 79 (339)
+.|-..+.+.+|..|.+|++.+.....+.+ ..-...|.+..++... .+.+..+...|+.+|..++.......... .
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~-~ 334 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY-A 334 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH-H
Confidence 445566679999999999999988887733 1112244555555543 44477888999999999999644442222 3
Q ss_pred cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHh
Q 048113 80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHN 159 (339)
Q Consensus 80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~n 159 (339)
.++.|.++..+...-..++..+..++-....... -...++.+..++++ .++..+......+..
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~------l~~~~~~I~e~lk~-----------knp~~k~~~~~~l~r 397 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP------LSKMSEAILEALKG-----------KNPQIKGECLLLLDR 397 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc------HHHHHHHHHHHhcC-----------CChhhHHHHHHHHHH
Confidence 4678888888877766666665555533333111 12356777788888 788888876666655
Q ss_pred hcC-CC-CChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHH
Q 048113 160 LST-CH-QLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLEN 202 (339)
Q Consensus 160 Ls~-~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n 202 (339)
.-. .+ .....-.-.+.++.++....+. +.+++..|..+++.
T Consensus 398 ~~~~~~~~~~~~~t~~~l~p~~~~~~~D~--~~~VR~Aa~e~~~~ 440 (815)
T KOG1820|consen 398 KLRKLGPKTVEKETVKTLVPHLIKHINDT--DKDVRKAALEAVAA 440 (815)
T ss_pred HHhhcCCcCcchhhHHHHhHHHhhhccCC--cHHHHHHHHHHHHH
Confidence 433 22 2221111224666777777664 57889888887773
No 212
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.47 E-value=1.5 Score=45.69 Aligned_cols=135 Identities=13% Similarity=0.065 Sum_probs=91.1
Q ss_pred HHHHHHHhhcc--ccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhh-cCChHHHHHHHHHHHHhhccCch
Q 048113 176 TYCLLQLIHSS--EKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIE-EGSPQCKEHAVAILLLICKSCRD 252 (339)
Q Consensus 176 i~~Lv~ll~~~--~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~ 252 (339)
.|.++...+++ ..++.++..|.-+|+..++-..+. . +.-+|.|+..+. +++|.++-+++.++..++...++
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~f----c--es~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEF----C--ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHH----H--HHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 44444444332 124678888888888666655432 2 235788999888 68899999999999999987655
Q ss_pred hHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhh-hHHHHHHHHHHHhcC-cccchHHHHHHH
Q 048113 253 KYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLK-NELVEQIMQEIDAEG-DTVAGTTLRLVE 330 (339)
Q Consensus 253 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~-~~~~~~a~~~l~ 330 (339)
.- +-.-+.|.+.+++.++.+|+.|...|.+|--..- +. .+.+.. |..+..|+ +.++.-|+....
T Consensus 995 -li-----e~~T~~Ly~rL~D~~~~vRkta~lvlshLILndm-------iKVKGql~e-MA~cl~D~~~~IsdlAk~FF~ 1060 (1251)
T KOG0414|consen 995 -LI-----EPWTEHLYRRLRDESPSVRKTALLVLSHLILNDM-------IKVKGQLSE-MALCLEDPNAEISDLAKSFFK 1060 (1251)
T ss_pred -cc-----chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhh-------hHhcccHHH-HHHHhcCCcHHHHHHHHHHHH
Confidence 22 2367889999999999999999999998866442 22 233333 33333555 555777774333
No 213
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=90.46 E-value=1.4 Score=44.68 Aligned_cols=152 Identities=14% Similarity=0.134 Sum_probs=101.1
Q ss_pred cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh-cCChHHHHHhhcCCChhHHHHHHHHHHHHhc-Cccch
Q 048113 38 RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK-SGIVPVLLEVLQCQSTTLIELTVAAMLILSS-CLENK 115 (339)
Q Consensus 38 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~ 115 (339)
..++|.|++.....+...+.+=+.+|.+.-.+-|. ...+-+ ....|.|++.|+-+|..++..+..++.-+.. .+.-.
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 46788888877765556666767777777664333 222222 2568889999999999999999888877664 22222
Q ss_pred HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHH
Q 048113 116 LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTE 194 (339)
Q Consensus 116 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 194 (339)
..- -...+|.++.+=.+.+ +....+|..|+.+|..|.. .|...-.-..-.++..|.+.|.++ .-.++.
T Consensus 945 t~~-~~Tlvp~lLsls~~~~--------n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk--KRlVR~ 1013 (1030)
T KOG1967|consen 945 TEH-LSTLVPYLLSLSSDND--------NNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK--KRLVRK 1013 (1030)
T ss_pred hHH-HhHHHHHHHhcCCCCC--------cchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH--HHHHHH
Confidence 111 1346777777765531 0127899999999999988 666655555556888899999874 245666
Q ss_pred HHHHHHH
Q 048113 195 KAIALLE 201 (339)
Q Consensus 195 ~a~~~L~ 201 (339)
.|..+=.
T Consensus 1014 eAv~tR~ 1020 (1030)
T KOG1967|consen 1014 EAVDTRQ 1020 (1030)
T ss_pred HHHHHhh
Confidence 6665433
No 214
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=90.43 E-value=1.6 Score=34.52 Aligned_cols=73 Identities=18% Similarity=0.209 Sum_probs=62.6
Q ss_pred CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhh-cCCHHHHHHHHHHHHHHhc
Q 048113 219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSV-DGTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~A~~~L~~l~~ 291 (339)
.++..|.+-|+++++.++..|+..|-.+..+.+......+.+.+.+..|++++. ..++.++.+...++..-+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 467788888888999999999999988888877778888888999999999987 5678899999999987765
No 215
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=90.38 E-value=2 Score=33.53 Aligned_cols=73 Identities=21% Similarity=0.385 Sum_probs=61.4
Q ss_pred CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc---CCHHHHHHHHHHHHHHhc
Q 048113 219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD---GTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~---~~~~~~~~A~~~L~~l~~ 291 (339)
.++..|-+-|+++++.++..|+.+|-.+..+.+..+...+.....+..|++++.. .++.++.++..++...+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3567788888899999999999999999888877677777777888889999875 478899999999988765
No 216
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.29 E-value=1.9 Score=42.58 Aligned_cols=116 Identities=19% Similarity=0.115 Sum_probs=80.4
Q ss_pred cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHH
Q 048113 38 RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLE 117 (339)
Q Consensus 38 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~ 117 (339)
.|.+.-++....+.+..+|...+..|..+.. +......-+-.+....+..-+....+.+|..|+.+|..+-.++..-
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de-- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE-- 160 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC--
Confidence 3445555555667788999999999999988 3333444444556666666666777889999999999987433221
Q ss_pred HHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHH
Q 048113 118 IASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIV 171 (339)
Q Consensus 118 i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~ 171 (339)
+..++..++.+++++ .++++|..|+ .|++-++.....|+
T Consensus 161 --e~~v~n~l~~liqnD----------pS~EVRRaaL---snI~vdnsTlp~Iv 199 (892)
T KOG2025|consen 161 --ECPVVNLLKDLIQND----------PSDEVRRAAL---SNISVDNSTLPCIV 199 (892)
T ss_pred --cccHHHHHHHHHhcC----------CcHHHHHHHH---HhhccCcccchhHH
Confidence 133678889999996 7899999876 55555555554443
No 217
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=89.91 E-value=13 Score=37.19 Aligned_cols=131 Identities=17% Similarity=0.122 Sum_probs=84.2
Q ss_pred cCChHHHH-HHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHh-hcCCChhHHHHHHHHHHHHhcCccch
Q 048113 38 RGIIAPLI-SMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEV-LQCQSTTLIELTVAAMLILSSCLENK 115 (339)
Q Consensus 38 ~g~i~~Lv-~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~nLs~~~~~~ 115 (339)
.+-..+++ +++.+.+|-+|.....++..--.+.. ..++|..|+.. .+..+.+++..|..+|.-....++
T Consensus 517 qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp-- 587 (929)
T KOG2062|consen 517 QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP-- 587 (929)
T ss_pred hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecCh--
Confidence 33444454 56777788888877655432222112 23567778877 566688999999999988776444
Q ss_pred HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHH
Q 048113 116 LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEK 195 (339)
Q Consensus 116 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~ 195 (339)
...+..|++|... .++.+|.-++-+|.--|...-++..+ ..|-.+..++ ..=++..
T Consensus 588 ------~~~~s~V~lLses----------~N~HVRyGaA~ALGIaCAGtG~~eAi------~lLepl~~D~--~~fVRQg 643 (929)
T KOG2062|consen 588 ------EQLPSTVSLLSES----------YNPHVRYGAAMALGIACAGTGLKEAI------NLLEPLTSDP--VDFVRQG 643 (929)
T ss_pred ------hhchHHHHHHhhh----------cChhhhhhHHHHHhhhhcCCCcHHHH------HHHhhhhcCh--HHHHHHH
Confidence 2467778888663 79999999999999888766655544 2222333332 2345555
Q ss_pred HHHHHH
Q 048113 196 AIALLE 201 (339)
Q Consensus 196 a~~~L~ 201 (339)
|+-+++
T Consensus 644 AlIa~a 649 (929)
T KOG2062|consen 644 ALIALA 649 (929)
T ss_pred HHHHHH
Confidence 665555
No 218
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.77 E-value=0.86 Score=45.98 Aligned_cols=136 Identities=8% Similarity=0.083 Sum_probs=97.0
Q ss_pred HHHHHhcCChHHHHHHhccC--------CHHHHHHHHHHHHHhccCCcchhhHHhhc--------CChHHHHHhhcC---
Q 048113 32 KHKLVERGIIAPLISMLCSQ--------DYEAIEAALLSLLSLACGSERNKIRIVKS--------GIVPVLLEVLQC--- 92 (339)
Q Consensus 32 ~~~i~~~g~i~~Lv~lL~~~--------~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~--------g~i~~Lv~lL~~--- 92 (339)
..-|.+.+++..++++.... ..+....|+.+|+.+.. -|..+..++.+ .|+..++..-.-
T Consensus 594 aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~-iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~ 672 (1516)
T KOG1832|consen 594 AENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS-IPDIQKALAHATLSNNRAYDGIAIILDAANGSNS 672 (1516)
T ss_pred HHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe-cchHHHHHHHHHhhcccccCceEEEeeccccccc
Confidence 34567788888888876643 45788899999999998 68877776543 245544443221
Q ss_pred -CChhHHHHHHHHHHHHhcCc-cchH-----------------------------------HHHhcchHHHHHHHhcCCC
Q 048113 93 -QSTTLIELTVAAMLILSSCL-ENKL-----------------------------------EIASSGAIQRLVEILNGDL 135 (339)
Q Consensus 93 -~~~~~~~~a~~~L~nLs~~~-~~~~-----------------------------------~i~~~g~i~~Lv~ll~~~~ 135 (339)
.+++++..|+.++.|+.+.+ +++. .+...++|..|+++|+...
T Consensus 673 i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~ 752 (1516)
T KOG1832|consen 673 IVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKN 752 (1516)
T ss_pred ccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccC
Confidence 26899999999999998766 3432 2334678999999998632
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcC
Q 048113 136 ADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSG 174 (339)
Q Consensus 136 ~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g 174 (339)
+-. .-..++..|+++|.-|+.+++.++.+.+.-
T Consensus 753 P~t------~aD~IRalAc~~L~GLaR~~tVrQIltKLp 785 (1516)
T KOG1832|consen 753 PPT------TADCIRALACRVLLGLARDDTVRQILTKLP 785 (1516)
T ss_pred CCC------cHHHHHHHHHHHHhccccCcHHHHHHHhCc
Confidence 110 234577889999999999999888776653
No 219
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=89.30 E-value=17 Score=33.17 Aligned_cols=157 Identities=13% Similarity=0.069 Sum_probs=107.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHH-H----HHHHHHhcC-ChHHHHHHhccC-----C--------HHHHHHHHHHHH
Q 048113 4 MLMDNLLNGERETQIQAANELGKLSR-R----QKHKLVERG-IIAPLISMLCSQ-----D--------YEAIEAALLSLL 64 (339)
Q Consensus 4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~-~----~~~~i~~~g-~i~~Lv~lL~~~-----~--------~~~~~~A~~~L~ 64 (339)
.+...|.++.+.....+++.|..+.. + .++.+..-+ ..+.+.+++... . +.+|....+.+.
T Consensus 60 ~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~L 139 (330)
T PF11707_consen 60 LLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWL 139 (330)
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHH
Confidence 35566777788888899999999887 3 444444433 334455555321 1 278888887666
Q ss_pred Hhcc-CCcchhhHHh-hcCChHHHHHhhcCCChhHHHHHHHHHHH-HhcCcc----chHHHHhcchHHHHHHHhcCCCCC
Q 048113 65 SLAC-GSERNKIRIV-KSGIVPVLLEVLQCQSTTLIELTVAAMLI-LSSCLE----NKLEIASSGAIQRLVEILNGDLAD 137 (339)
Q Consensus 65 ~Ls~-~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~n-Ls~~~~----~~~~i~~~g~i~~Lv~ll~~~~~~ 137 (339)
.+.. +++..+..+. +.+.+..+.+-|..+++++....+.+|.. +..++. .|..+.....+..|..+......
T Consensus 140 sfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~~- 218 (330)
T PF11707_consen 140 SFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDGE- 218 (330)
T ss_pred HHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccCC-
Confidence 5555 3455566555 45779999999999999999999999985 444332 25566678899999998877210
Q ss_pred CCCccCCCCHHHHHHHHHHHHhhcCCCCCh
Q 048113 138 DDNSYGRISVQAKIDAIATLHNLSTCHQLI 167 (339)
Q Consensus 138 ~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~ 167 (339)
.....+...+-..|..+|.++..-
T Consensus 219 ------~~~~~~~~~vh~fL~~lcT~p~~G 242 (330)
T PF11707_consen 219 ------DEKSSVADLVHEFLLALCTDPKHG 242 (330)
T ss_pred ------cccchHHHHHHHHHHHHhcCCCcc
Confidence 023488888999999998776543
No 220
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=89.28 E-value=14 Score=32.57 Aligned_cols=220 Identities=17% Similarity=0.116 Sum_probs=121.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCC--ChhHHHHHHHHHHHHhcCccchHHHH
Q 048113 42 APLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQ--STTLIELTVAAMLILSSCLENKLEIA 119 (339)
Q Consensus 42 ~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~~~~~i~ 119 (339)
+.|-..|.++++..|..|+..|...-..-+... ....-+..|+.++.+. +......++..+..|..........
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~- 77 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES- 77 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-
Confidence 345567888999999999998887666433222 2222356666665442 4445555566666665322211111
Q ss_pred hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHH--hcCcHHHHHHHhhccccCchHHHHHH
Q 048113 120 SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIV--SSGVTYCLLQLIHSSEKSSGLTEKAI 197 (339)
Q Consensus 120 ~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~Lv~ll~~~~~~~~~~~~a~ 197 (339)
....+..+.+-.+-. +.....|......|..|..+. ...+. ..+.+..+++.+.. ++++.-...+.
T Consensus 78 ~~~i~~~l~~~~~~q---------~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~g-EkDPRnLl~~F 145 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQ---------SLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDG-EKDPRNLLLSF 145 (262)
T ss_pred HHHHHHHHHHhCChh---------hhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhcc-CCCHHHHHHHH
Confidence 111233333222111 135567788888888875442 22232 23577778887765 45677777777
Q ss_pred HHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc---------C-Ch--HHHHHHHHHHHHhhccCchhHHHHHHhcCChH
Q 048113 198 ALLENIVSSSEDALQEIAATCGAIRALVETIEE---------G-SP--QCKEHAVAILLLICKSCRDKYRSSILKEGVMP 265 (339)
Q Consensus 198 ~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~---------~-~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~ 265 (339)
..+. .+...-+. ....+.+.+.+.. + ++ -.++.-...|.+.-... +. ...-++|
T Consensus 146 ~l~~-~i~~~~~~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~-~~-----fa~~~~p 211 (262)
T PF14500_consen 146 KLLK-VILQEFDI-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST-PL-----FAPFAFP 211 (262)
T ss_pred HHHH-HHHHhccc-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc-Hh-----hHHHHHH
Confidence 6666 33222111 2334444444421 1 21 22333334444332221 21 2335799
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113 266 GLLQLSVDGTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 266 ~L~~ll~~~~~~~~~~A~~~L~~l~~ 291 (339)
.|++-+.++++.+|.-+...|..+..
T Consensus 212 ~LleKL~s~~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 212 LLLEKLDSTSPSVKLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999888877655
No 221
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=89.28 E-value=20 Score=33.96 Aligned_cols=174 Identities=16% Similarity=0.169 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHHhccCCc-chhhHHhhcCChHHHHHhhcC-CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHH
Q 048113 52 DYEAIEAALLSLLSLACGSE-RNKIRIVKSGIVPVLLEVLQC-QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVE 129 (339)
Q Consensus 52 ~~~~~~~A~~~L~~Ls~~~~-~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ 129 (339)
..+-+..|+.-|..+.+... ..++... ...+..++..|.. .++..+..|++.|.....+.+.+-.=...-+|.++++
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le 378 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE 378 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence 44566777775555555332 2222221 2245567777877 5778899999999998876653321111225666666
Q ss_pred HhcCCCCCCCCccCCCCHHHHH-HHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcC-C
Q 048113 130 ILNGDLADDDNSYGRISVQAKI-DAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSS-S 207 (339)
Q Consensus 130 ll~~~~~~~~~~~~~~~~~~~~-~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~-~ 207 (339)
.-.+ .+..+.. .+-.++.-++....... |.-+..++... +.+....++..+...+-. .
T Consensus 379 aa~d-----------s~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~--D~~~~~~~iKm~Tkl~e~l~ 438 (516)
T KOG2956|consen 379 AAKD-----------SQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTA--DEPRAVAVIKMLTKLFERLS 438 (516)
T ss_pred HHhC-----------CchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcC--cchHHHHHHHHHHHHHhhcC
Confidence 6655 3444444 34444555555333221 22233333332 345555555555522211 1
Q ss_pred HhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhc
Q 048113 208 EDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICK 248 (339)
Q Consensus 208 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 248 (339)
.+.-..++ .++.|.+++--.+.+..++..|+.||..+..
T Consensus 439 ~EeL~~ll--~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 439 AEELLNLL--PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHHHHHhh--hhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 22222334 4788999999999999999999999988864
No 222
>PRK14707 hypothetical protein; Provisional
Probab=88.82 E-value=48 Score=37.68 Aligned_cols=284 Identities=12% Similarity=0.052 Sum_probs=156.1
Q ss_pred CCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHH
Q 048113 12 GERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQ-DYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLE 88 (339)
Q Consensus 12 ~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~ 88 (339)
++..-+..+...-..++.+ -+..+-..|+...|-.+-+-+ ++.++..|...-..|+. ...-+..+-..|+-..|=.
T Consensus 177 ~~~~c~~aa~~la~~~~~~d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l~~~~~~q~va~~lN~ 255 (2710)
T PRK14707 177 DNPDCQAVAPRFAALVASDDRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRLRNELKPQELGNALNA 255 (2710)
T ss_pred CCchHHHHHHHHHHHhcCChhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHHHHhCChHHHHHHHHH
Confidence 4555555555555556554 555554455555555555555 55555555444455555 3444444444444444444
Q ss_pred hhcCCChhHHHHHHHHHH-HHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHH-HHHHHHHHHhhcCCCCC
Q 048113 89 VLQCQSTTLIELTVAAML-ILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQA-KIDAIATLHNLSTCHQL 166 (339)
Q Consensus 89 lL~~~~~~~~~~a~~~L~-nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~-~~~a~~~L~nLs~~~~~ 166 (339)
+-+-++...-..++..+. .++.+..-+..+ +...+...+.-|..- .+..+ +..|...-..|..+++.
T Consensus 256 lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al-~~q~vanalNalSKw----------pd~~vc~~Aa~~la~rl~~d~~l 324 (2710)
T PRK14707 256 LSKWADTPVCAAAASALAERLVDDPGLRKAL-DPINVTQALNALSKW----------ADLPVCAEAAIALAERLADDPEL 324 (2710)
T ss_pred HhcCCCchHHHHHHHHHHHHHhhhHHHHHhc-CHHHHHHHHhhhhcC----------CCchHHHHHHHHHHHHHhccHhh
Confidence 444455545555555553 344333323333 222333444444331 34444 44444444466666666
Q ss_pred hHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc-CChHHHHHHHHHHHH
Q 048113 167 ISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE-GSPQCKEHAVAILLL 245 (339)
Q Consensus 167 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~ 245 (339)
++.+- .-.+...++-|..++ +......|...|+.-+..+++-++.+- ..++...++-|.. ++...-..++..|..
T Consensus 325 ~~~~~-~~~~~~~LNalsKWp-d~~~C~~Aa~~LA~rl~~d~~l~~~l~--~q~~a~~lNalsKWp~~~~c~~aa~~LA~ 400 (2710)
T PRK14707 325 CKALN-ARGLSTALNALSKWP-DNPVCAAAVSALAERLVADPELRKDLE--PQGVSSVLNALSKWPDTPVCAAAASALAE 400 (2710)
T ss_pred hhccc-hHHHHHHHHHhhcCC-CchhHHHHHHHHHHHhccCHhhhcccc--hhHHHHHHhhhhcCCCchHHHHHHHHHHH
Confidence 65443 334666777777775 455566666666667888888887774 3456666666655 455555556666654
Q ss_pred hhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHH-HHHhccCCCcchhhhhhhHHHHHHHHHHH
Q 048113 246 ICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLL-LLLRDCSSFGSRSKQLKNELVEQIMQEID 315 (339)
Q Consensus 246 l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L-~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 315 (339)
=...+ .+.++.+-..|+-..|-.+.+=++..+-..|+..| ..+++..+ -.+.+..-.+.+.+.-++
T Consensus 401 ~l~~d-~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~---l~~~~~p~~va~~LnalS 467 (2710)
T PRK14707 401 HVVDD-LELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTE---LCKALDPINVTQALDALS 467 (2710)
T ss_pred HhccC-hhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHH---HHhhcChHHHHHHHHHhh
Confidence 44444 44777777677777676666666666655555554 66666554 344555555555555554
No 223
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=88.59 E-value=6.1 Score=32.08 Aligned_cols=106 Identities=20% Similarity=0.195 Sum_probs=69.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcC--ChHHHHHHhccC-CHHHHHHHHHHHHHhc---cCCcchhh
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR-QKHKLVERG--IIAPLISMLCSQ-DYEAIEAALLSLLSLA---CGSERNKI 75 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g--~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls---~~~~~~~~ 75 (339)
..+..+|.+++++.|-.++..++..... ..+.+.+.+ .+..++..|+.+ .+.+.+.++.+|..+. .+.++...
T Consensus 28 ~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~R 107 (165)
T PF08167_consen 28 TRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTR 107 (165)
T ss_pred HHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 3567788899999999999999988888 477775533 778888899875 4456666666655544 44455433
Q ss_pred HHhhc---CChHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 048113 76 RIVKS---GIVPVLLEVLQCQSTTLIELTVAAMLILSS 110 (339)
Q Consensus 76 ~i~~~---g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~ 110 (339)
.+.-. +.++.++.+++. ......++.+|..+..
T Consensus 108 ei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 108 EIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred HHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 33322 334555555553 3456677777766653
No 224
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.55 E-value=4.1 Score=39.51 Aligned_cols=103 Identities=15% Similarity=0.181 Sum_probs=74.9
Q ss_pred cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHh
Q 048113 80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHN 159 (339)
Q Consensus 80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~n 159 (339)
.|.+..+++-+.+++..++..++.+|..++..-..-....-.|.+++|.+-+-. ..+.++..|+.+|+.
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~D-----------RE~~VR~eAv~~L~~ 158 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFD-----------REKAVRREAVKVLCY 158 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhc-----------chHHHHHHHHHHHHH
Confidence 467788888889999999999999999888654444455667888888886666 688899999999998
Q ss_pred hcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHH
Q 048113 160 LSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIA 198 (339)
Q Consensus 160 Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~ 198 (339)
+-....+-+.. ....|+.+++++ ++.+++..|+-
T Consensus 159 ~Qe~~~neen~----~~n~l~~~vqnD-PS~EVRr~all 192 (885)
T COG5218 159 YQEMELNEENR----IVNLLKDIVQND-PSDEVRRLALL 192 (885)
T ss_pred HHhccCChHHH----HHHHHHHHHhcC-cHHHHHHHHHH
Confidence 75433322221 233667777765 46777777654
No 225
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=88.31 E-value=3.4 Score=30.33 Aligned_cols=90 Identities=19% Similarity=0.140 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHH-HHH--HHHHHH-hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhh
Q 048113 15 ETQIQAANELGKL-SRR--QKHKLV-ERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVL 90 (339)
Q Consensus 15 ~~~~~a~~~L~~l-~~~--~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL 90 (339)
++|+.|+..+-.- ..+ .-..+. ..+.+..|+.-.+..++.....++..+..+.. .|.....+.+.|+++.|-++=
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr 80 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLR 80 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHH
Confidence 5677777665432 223 333333 56777778887777777788999999999999 688999999999999977776
Q ss_pred cCCChhHHHHHHHHH
Q 048113 91 QCQSTTLIELTVAAM 105 (339)
Q Consensus 91 ~~~~~~~~~~a~~~L 105 (339)
..-++..+...-.++
T Consensus 81 ~~~~~~~~~~id~il 95 (98)
T PF14726_consen 81 PNVEPNLQAEIDEIL 95 (98)
T ss_pred hcCCHHHHHHHHHHH
Confidence 555666665554444
No 226
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=88.24 E-value=1.8 Score=37.08 Aligned_cols=130 Identities=21% Similarity=0.204 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhhcCCCC---ChHHHHhcCcHHHHHHHhhccc-------------cCchHHHHHHHHHHHhhcCCHhh
Q 048113 147 VQAKIDAIATLHNLSTCHQ---LISPIVSSGVTYCLLQLIHSSE-------------KSSGLTEKAIALLENIVSSSEDA 210 (339)
Q Consensus 147 ~~~~~~a~~~L~nLs~~~~---~~~~i~~~g~i~~Lv~ll~~~~-------------~~~~~~~~a~~~L~n~l~~~~~~ 210 (339)
...|++|+-+|.|++..-+ .-+.| ..-+++-|++....+. ..-.-++.|+.+|+ -++..+.|
T Consensus 80 ~~lREnalV~laNisgqLdLs~~~e~I-~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLc-KLsV~e~N 157 (257)
T PF12031_consen 80 EQLRENALVTLANISGQLDLSDYPESI-ARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALC-KLSVIENN 157 (257)
T ss_pred HHHhhcceEeeeeeeeeeecccCchHH-HHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHH-HhheeccC
Confidence 3477788888888875322 11122 1112333343332210 01235788999999 88888877
Q ss_pred hHHHHhh------CCcHHHHHHHhhc-CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHH
Q 048113 211 LQEIAAT------CGAIRALVETIEE-GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRA 278 (339)
Q Consensus 211 ~~~i~~~------~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~ 278 (339)
..-+..+ ...+..|++++.. .++-.+|.|+..|.+||..+....|....+.+.|..|+..+.+.....
T Consensus 158 VDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~~~ 232 (257)
T PF12031_consen 158 VDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQNA 232 (257)
T ss_pred cceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 7666542 1234555666654 468889999999999999876655565667899999999998765444
No 227
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.15 E-value=4.4 Score=36.10 Aligned_cols=134 Identities=16% Similarity=0.205 Sum_probs=87.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHh--cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113 5 LMDNLLNGERETQIQAANELGKLSRRQKHKLVE--RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI 82 (339)
Q Consensus 5 Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~ 82 (339)
.+..|.|.+|+....++..++.++......+.. +.+|-.+++-+++....+...|+.++.-+... -.+ .+.+ -
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~-ln~--~i~~--~ 167 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSS-LNN--SIDQ--E 167 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH-HHH--HHHH--H
Confidence 456778999999999999999999863333322 45666777778888889999999999888873 222 2222 3
Q ss_pred hHHHHHhh-cCCC---hhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113 83 VPVLLEVL-QCQS---TTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH 158 (339)
Q Consensus 83 i~~Lv~lL-~~~~---~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~ 158 (339)
...++..| ...+ .-+++.|-.+|..+..+-.-. -.++.|...+++ .++.++..++.++.
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~-----------~n~r~r~~a~~~~~ 230 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQH-----------SNPRVRAKAALCFS 230 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhh-----------hchhhhhhhhcccc
Confidence 33344433 3322 236777777776665433211 146777777877 67778877775555
Q ss_pred hh
Q 048113 159 NL 160 (339)
Q Consensus 159 nL 160 (339)
+.
T Consensus 231 ~~ 232 (334)
T KOG2933|consen 231 RC 232 (334)
T ss_pred cc
Confidence 54
No 228
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=88.06 E-value=20 Score=36.35 Aligned_cols=136 Identities=13% Similarity=0.098 Sum_probs=86.5
Q ss_pred HHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHH--HHHHHhhcC-
Q 048113 156 TLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIR--ALVETIEEG- 231 (339)
Q Consensus 156 ~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~--~Lv~lL~~~- 231 (339)
+|++... ++++++.+.+.|+...+.+.++.. ...++...+++.+. +++...+.+..... ...+. ..-.++...
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-~~~~~~~~il~~l~-n~~~~~~~~~~~~~-~~~~~~~~f~~~~~~w~ 570 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF-DNEELHRKILGLLG-NLAEVLELRELLMI-FEFIDFSVFKVLLNKWD 570 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-cchhHHHHHHHHHH-HHHHHhhhhhhhhH-HHHHHHHHHHHHHhhcc
Confidence 8899987 679999999999999999999976 57899999999999 67665544433321 11111 222244333
Q ss_pred ChHHHHHHHHHHHHhhccCch--------hHHHHHHh--------------cCChHH-HHHhhh-cCCHHHHHHHHHHHH
Q 048113 232 SPQCKEHAVAILLLICKSCRD--------KYRSSILK--------------EGVMPG-LLQLSV-DGTWRAKNMARDLLL 287 (339)
Q Consensus 232 ~~~~~~~a~~~L~~l~~~~~~--------~~~~~~~~--------------~g~i~~-L~~ll~-~~~~~~~~~A~~~L~ 287 (339)
+.+.-..++++|+.+..+++. ...+.+.+ ...+.+ +.+++. +..+..+.-|++.++
T Consensus 571 ~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~ 650 (699)
T KOG3665|consen 571 SIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIK 650 (699)
T ss_pred hhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHH
Confidence 347777888888877764210 11111111 112222 444444 345667788888898
Q ss_pred HHhccCC
Q 048113 288 LLRDCSS 294 (339)
Q Consensus 288 ~l~~~~~ 294 (339)
++.....
T Consensus 651 ~~~~~~~ 657 (699)
T KOG3665|consen 651 NVLEQNK 657 (699)
T ss_pred HHHHcCh
Confidence 8877543
No 229
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=87.73 E-value=8.7 Score=37.40 Aligned_cols=86 Identities=17% Similarity=0.307 Sum_probs=67.0
Q ss_pred hhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHH
Q 048113 203 IVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMA 282 (339)
Q Consensus 203 ~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A 282 (339)
.+...|++ ..+++ |.+..+++.+.+++..++..++.+|+.+...-++ .....-.|.+..|.+.+.+..+.++..|
T Consensus 78 ~~~~dpeg-~~~V~--~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e--IDe~l~N~L~ekl~~R~~DRE~~VR~eA 152 (885)
T COG5218 78 DMPDDPEG-EELVA--GTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE--IDEVLANGLLEKLSERLFDREKAVRREA 152 (885)
T ss_pred cCCCChhh-hHHHH--HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34556666 45663 7889999999999999999999999998765333 1244556888889888999999999999
Q ss_pred HHHHHHHhccC
Q 048113 283 RDLLLLLRDCS 293 (339)
Q Consensus 283 ~~~L~~l~~~~ 293 (339)
+.+|..+-...
T Consensus 153 v~~L~~~Qe~~ 163 (885)
T COG5218 153 VKVLCYYQEME 163 (885)
T ss_pred HHHHHHHHhcc
Confidence 99998886544
No 230
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=86.30 E-value=4.5 Score=32.06 Aligned_cols=67 Identities=13% Similarity=0.115 Sum_probs=57.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccC
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCS-QDYEAIEAALLSLLSLACG 69 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~ 69 (339)
..|.+.|.++++.++..|+..|-.+.++ .+..+...+.+..|+.++.. .++.++...+..+...+..
T Consensus 40 ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 40 KAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 3577888999999999999999999987 56677778899999999887 6889999999998887763
No 231
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=86.25 E-value=24 Score=34.93 Aligned_cols=168 Identities=14% Similarity=0.086 Sum_probs=94.8
Q ss_pred HHhccCCHHHHHHHHHHHHHhccCCcchhhHHh---hcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcc
Q 048113 46 SMLCSQDYEAIEAALLSLLSLACGSERNKIRIV---KSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSG 122 (339)
Q Consensus 46 ~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~---~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g 122 (339)
..+..-..+.+-.|+.+|+.+..+...+-..+- .+..+..++..+. .++..+..++++|.|+-.++.++..+...
T Consensus 551 ~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~- 628 (745)
T KOG0301|consen 551 AILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR- 628 (745)
T ss_pred HHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH-
Confidence 344445677888899999999985443333222 1234555555555 45677888999999998887777766543
Q ss_pred hHHHHHHHhcC-CCCCCCCccCCCCHHHHHHHHHHHHhhcC--CCCChHHHHhcCcHHHHHHHhhc---cccCchHHHHH
Q 048113 123 AIQRLVEILNG-DLADDDNSYGRISVQAKIDAIATLHNLST--CHQLISPIVSSGVTYCLLQLIHS---SEKSSGLTEKA 196 (339)
Q Consensus 123 ~i~~Lv~ll~~-~~~~~~~~~~~~~~~~~~~a~~~L~nLs~--~~~~~~~i~~~g~i~~Lv~ll~~---~~~~~~~~~~a 196 (339)
.+.+...+.. .+ ..+..+.........|++. ...+-+ .|..+.+...+.. ..++-+..-..
T Consensus 629 -~~~i~~~~~~~~s--------~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~ 695 (745)
T KOG0301|consen 629 -LESILDPVIEASS--------LSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRL 695 (745)
T ss_pred -HHHHhhhhhhhhc--------ccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHH
Confidence 3333332211 10 0334455544444445543 222211 3444444444433 21222345567
Q ss_pred HHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc
Q 048113 197 IALLENIVSSSEDALQEIAATCGAIRALVETIEE 230 (339)
Q Consensus 197 ~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~ 230 (339)
+.+|+ .+...+....++.+ .--+..+..-+++
T Consensus 696 l~Alg-tL~t~~~~~~~~A~-~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 696 LVALG-TLMTVDASVIQLAK-NRSVDSIAKKLKE 727 (745)
T ss_pred HHHHH-hhccccHHHHHHHH-hcCHHHHHHHHHH
Confidence 78888 56666666667766 4567777777765
No 232
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=85.74 E-value=33 Score=32.58 Aligned_cols=129 Identities=14% Similarity=0.171 Sum_probs=77.5
Q ss_pred HHHHHH-HHHHhhcCCHhh-hHHHHhhCCcHHHHHHHhhc-CChHHHHHHHHHHHHhhccCchhHHHHHHh--cCChHHH
Q 048113 193 TEKAIA-LLENIVSSSEDA-LQEIAATCGAIRALVETIEE-GSPQCKEHAVAILLLICKSCRDKYRSSILK--EGVMPGL 267 (339)
Q Consensus 193 ~~~a~~-~L~n~l~~~~~~-~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~g~i~~L 267 (339)
+..|+. +.. .++..... ..+.. ...+..+++.|.+ .++.++..|+.+|..+|...+. .+.+ +=++..+
T Consensus 304 ~k~alsel~~-m~~e~sfsvWeq~f--~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~----~l~DstE~ai~K~ 376 (516)
T KOG2956|consen 304 RKEALSELPK-MLCEGSFSVWEQHF--AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA----RLFDSTEIAICKV 376 (516)
T ss_pred HHHHHHHHHH-HHHccchhHHHHHH--HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH----hhhchHHHHHHHH
Confidence 445554 333 44444322 22222 2355677788877 5788999999999999977433 3332 2355555
Q ss_pred HHhhhcCCHHHH-HHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHHHHhc
Q 048113 268 LQLSVDGTWRAK-NMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIAKLS 337 (339)
Q Consensus 268 ~~ll~~~~~~~~-~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v~~~~ 337 (339)
++-..+..+.+- ..+-.+++.++.+.++.. +..|...+..++++..-.+-++++.++++|.
T Consensus 377 Leaa~ds~~~v~~~Aeed~~~~las~~P~~~---------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~ 438 (516)
T KOG2956|consen 377 LEAAKDSQDEVMRVAEEDCLTTLASHLPLQC---------IVNISPLILTADEPRAVAVIKMLTKLFERLS 438 (516)
T ss_pred HHHHhCCchhHHHHHHHHHHHHHHhhCchhH---------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcC
Confidence 555556666554 444457888888766421 2233334434566666678888888888764
No 233
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=85.73 E-value=4.9 Score=39.81 Aligned_cols=109 Identities=14% Similarity=0.030 Sum_probs=78.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH-HHH-HHHh------cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchh
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR-QKH-KLVE------RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNK 74 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~-~i~~------~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~ 74 (339)
+.++.+|+++....|+.-+++.+|+..+ .++ .+.+ ...+..|++-+.+..|-+|..|++.+..++.-+..
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk-- 379 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK-- 379 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc--
Confidence 4678899999999999999999999876 222 2333 33455556666777999999999988777653211
Q ss_pred hHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc
Q 048113 75 IRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE 113 (339)
Q Consensus 75 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~ 113 (339)
..=..+.++...++.++..+.-+|.+|...+..|....+
T Consensus 380 ~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 380 TVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred ccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 111223456678888888888899999998888765443
No 234
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=85.68 E-value=9 Score=28.12 Aligned_cols=95 Identities=16% Similarity=0.090 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHh
Q 048113 191 GLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQL 270 (339)
Q Consensus 191 ~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~l 270 (339)
+++..|+.-+-.-+..+--....+++..+.+..|++-+..+....++.++..+..+...+. ..+.+.+-|++.-|.++
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~--a~~~l~~iG~~~fL~kl 79 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPY--AAQILRDIGAVRFLSKL 79 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcH--HHHHHHHccHHHHHHHH
Confidence 3455555333223333333333444445677788887877777788999999999987742 45777789999998888
Q ss_pred hhcCCHHHHHHHHHHHH
Q 048113 271 SVDGTWRAKNMARDLLL 287 (339)
Q Consensus 271 l~~~~~~~~~~A~~~L~ 287 (339)
-...++..+...-.++.
T Consensus 80 r~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 80 RPNVEPNLQAEIDEILD 96 (98)
T ss_pred HhcCCHHHHHHHHHHHh
Confidence 77777877766655554
No 235
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.18 E-value=26 Score=36.90 Aligned_cols=226 Identities=15% Similarity=0.143 Sum_probs=133.7
Q ss_pred HHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCC--C
Q 048113 60 LLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLA--D 137 (339)
Q Consensus 60 ~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~--~ 137 (339)
..+|..+-+++.+|...+.++.++..++.++-+ ++-|.-.++++..|...++.+. +..-+-.++..|++... .
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkqv---hhqelmalVdtLksgmvt~I 737 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQV---HHQELMALVDTLKSGMVTRI 737 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCcccc---cHHHHHHHHHHHHhcceecc
Confidence 456777777788999999999999888888743 4456666666666665444321 12234566666665200 0
Q ss_pred CCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhcccc------CchH------HH----------
Q 048113 138 DDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEK------SSGL------TE---------- 194 (339)
Q Consensus 138 ~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~------~~~~------~~---------- 194 (339)
.-+ ...-........+.++|..-. +...+..+.++|++..|...|..-.. ..+. ..
T Consensus 738 sge-qyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav 816 (2799)
T KOG1788|consen 738 SGE-QYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV 816 (2799)
T ss_pred chh-HHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence 000 000012344556777787754 55667778888777777666532100 0000 00
Q ss_pred -----------------------------------HHHHHHHH----------------------hhc-----------C
Q 048113 195 -----------------------------------KAIALLEN----------------------IVS-----------S 206 (339)
Q Consensus 195 -----------------------------------~a~~~L~n----------------------~l~-----------~ 206 (339)
+.+..|-. .+. .
T Consensus 817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGq 896 (2799)
T KOG1788|consen 817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ 896 (2799)
T ss_pred hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC
Confidence 00000000 000 1
Q ss_pred CHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhh---hcCCHHHHHHHH
Q 048113 207 SEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLS---VDGTWRAKNMAR 283 (339)
Q Consensus 207 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll---~~~~~~~~~~A~ 283 (339)
....++++.+ +|++..|++.+-...++.|-.-+..+..++..++. +.+.....|.+..|.+++ .+++.+.-..|.
T Consensus 897 fnpdk~~iyn-agavRvlirslLlnypK~qlefl~lleSlaRaspf-naelltS~gcvellleIiypflsgsspfLshal 974 (2799)
T KOG1788|consen 897 FNPDKQKIYN-AGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPF-NAELLTSAGCVELLLEIIYPFLSGSSPFLSHAL 974 (2799)
T ss_pred cCchHhhhcc-cchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCC-chhhhhcccHHHHHHHHhhhhhcCCchHhhccH
Confidence 1223455555 77888888877777888888888888888877654 555556689999988875 456777777788
Q ss_pred HHHHHHhccC
Q 048113 284 DLLLLLRDCS 293 (339)
Q Consensus 284 ~~L~~l~~~~ 293 (339)
.++.+|.-.+
T Consensus 975 kIvemLgayr 984 (2799)
T KOG1788|consen 975 KIVEMLGAYR 984 (2799)
T ss_pred HHHHHHhhcc
Confidence 8877776543
No 236
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=85.12 E-value=4.1 Score=31.79 Aligned_cols=73 Identities=19% Similarity=0.259 Sum_probs=59.7
Q ss_pred CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCC--HHHHHHHHHHHHHHhc
Q 048113 219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGT--WRAKNMARDLLLLLRD 291 (339)
Q Consensus 219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~~~~~A~~~L~~l~~ 291 (339)
.++..|-+-|+++++.++..|+..|-.+..+++..+...+...+.+..|..++.... +.++.+...++..-+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 356677778888999999999999999988877778888888899999999987643 3389999988877654
No 237
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=85.11 E-value=2.9 Score=32.89 Aligned_cols=73 Identities=22% Similarity=0.341 Sum_probs=59.9
Q ss_pred CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcC-CHH---HHHHHHHHHHHHhc
Q 048113 219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDG-TWR---AKNMARDLLLLLRD 291 (339)
Q Consensus 219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~---~~~~A~~~L~~l~~ 291 (339)
.++..|-+-|+++++.++..|+..|-.+..+.++.++..+.....+..|.+++.+. ... +++++..++...+.
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 35677888888999999999999999998887777888888888999999987754 333 89999998877765
No 238
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=85.10 E-value=16 Score=29.56 Aligned_cols=115 Identities=11% Similarity=0.135 Sum_probs=75.9
Q ss_pred CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHh--cCChHHHHHhhhcCC-HHHHHHHHHHHHHHhcc-CC
Q 048113 219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILK--EGVMPGLLQLSVDGT-WRAKNMARDLLLLLRDC-SS 294 (339)
Q Consensus 219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~g~i~~L~~ll~~~~-~~~~~~A~~~L~~l~~~-~~ 294 (339)
..+..+..+|+++++..+..++..+...+..++ .+.+.+ .-.+..|+++++..+ +.+++.|+.+|..|... ..
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~---~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS---WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 456778889999888888888888888886642 245544 347777888887654 55678888888666442 22
Q ss_pred CcchhhhhhhHHHHHHHHHHH--hcCcccchHHHHHHHHHHHHh
Q 048113 295 FGSRSKQLKNELVEQIMQEID--AEGDTVAGTTLRLVEEMIAKL 336 (339)
Q Consensus 295 ~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~a~~~l~~~v~~~ 336 (339)
+..-..++....+..+++.+. .++....+.+...|..++..-
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPHH 145 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHC
Confidence 211122344555666666664 333567778888888888754
No 239
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=85.09 E-value=24 Score=30.43 Aligned_cols=144 Identities=16% Similarity=0.088 Sum_probs=85.6
Q ss_pred HHHHH-HhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHh
Q 048113 42 APLIS-MLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIAS 120 (339)
Q Consensus 42 ~~Lv~-lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 120 (339)
+.|+. .-+..+++.+...+.+|..++.++..+... ++..|..+.+.+..+.+..+.+.+..+...++-..
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence 44444 445568999999999999999953122222 34556666667766676677777777776444211
Q ss_pred cchHHHHHHH--hcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHh-hccccCchHHHHHH
Q 048113 121 SGAIQRLVEI--LNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLI-HSSEKSSGLTEKAI 197 (339)
Q Consensus 121 ~g~i~~Lv~l--l~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll-~~~~~~~~~~~~a~ 197 (339)
+.++.++.. ++.... ...++...+.......++..+|...++ .....++.+..++ ++. ++..+..++
T Consensus 74 -~~L~~~L~~~~~r~~~~---~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~--~~~~~alal 143 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSS---FSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSC--DEVAQALAL 143 (234)
T ss_pred -HHHHHHHHHHHhhcccc---cCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccc--cHHHHHHHH
Confidence 445555544 110000 000113455556666788888874443 2224677788888 443 466777888
Q ss_pred HHHHHhhc
Q 048113 198 ALLENIVS 205 (339)
Q Consensus 198 ~~L~n~l~ 205 (339)
.+|. .++
T Consensus 144 e~l~-~Lc 150 (234)
T PF12530_consen 144 EALA-PLC 150 (234)
T ss_pred HHHH-HHH
Confidence 8888 555
No 240
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=84.74 E-value=39 Score=33.92 Aligned_cols=131 Identities=13% Similarity=0.027 Sum_probs=90.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhc-cCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhh
Q 048113 12 GERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLC-SQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVL 90 (339)
Q Consensus 12 ~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL 90 (339)
+|++.+..|--+|..+..-.-.. -..-.|.|+..+. +++|.+|.+|.-.|+.++.-....... .-..|.+-|
T Consensus 908 sd~~lq~aA~l~L~klMClS~~f--c~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLyrrL 980 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEF--CSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLYRRL 980 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHHHHh
Confidence 68899999988888876431111 1234677887765 789999999988888776521111111 234577777
Q ss_pred cCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCC
Q 048113 91 QCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCH 164 (339)
Q Consensus 91 ~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~ 164 (339)
...+..++..+..++.+|......|. .|-.+.+...|.+ ++..+..-|-..+..++..+
T Consensus 981 ~De~~~V~rtclmti~fLilagq~KV----KGqlg~ma~~L~d-----------eda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 981 GDEDADVRRTCLMTIHFLILAGQLKV----KGQLGKMALLLTD-----------EDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred cchhhHHHHHHHHHHHHHHHccceee----ccchhhhHhhccC-----------CcchHHHHHHHHHHHHHhcc
Confidence 77888899999999999876443322 5667888888888 67777777777777776543
No 241
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=83.58 E-value=5.8 Score=39.57 Aligned_cols=137 Identities=18% Similarity=0.113 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHHHHHH-HHH-----------HHHhcCChHHHHHHhc----cCCHHHHHHHHHHHHHhccCCcchhhH
Q 048113 13 ERETQIQAANELGKLSRR-QKH-----------KLVERGIIAPLISMLC----SQDYEAIEAALLSLLSLACGSERNKIR 76 (339)
Q Consensus 13 ~~~~~~~a~~~L~~l~~~-~~~-----------~i~~~g~i~~Lv~lL~----~~~~~~~~~A~~~L~~Ls~~~~~~~~~ 76 (339)
++..+..|+-++..+... +.. .......++.+...+. ..+.+.+..++++|+|+...
T Consensus 448 ~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~------- 520 (618)
T PF01347_consen 448 SPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP------- 520 (618)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-------
T ss_pred ChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-------
Confidence 456677777777777766 222 1223456777776665 34678889999999999762
Q ss_pred HhhcCChHHHHHhhcCC---ChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHH
Q 048113 77 IVKSGIVPVLLEVLQCQ---STTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDA 153 (339)
Q Consensus 77 i~~~g~i~~Lv~lL~~~---~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a 153 (339)
..++.|.+.+... +..+|..|+++|..++...+. .+.+.+..++.+.. .+.++|..|
T Consensus 521 ----~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~-------~v~~~l~~I~~n~~---------e~~EvRiaA 580 (618)
T PF01347_consen 521 ----ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE-------KVREILLPIFMNTT---------EDPEVRIAA 580 (618)
T ss_dssp ----GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH-------HHHHHHHHHHH-TT---------S-HHHHHHH
T ss_pred ----hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH-------HHHHHHHHHhcCCC---------CChhHHHHH
Confidence 3567788877766 567888999998877543332 24778888887754 788999999
Q ss_pred HHHHHhhcCCCCChHHHHhcCcHHHHHHHhhc
Q 048113 154 IATLHNLSTCHQLISPIVSSGVTYCLLQLIHS 185 (339)
Q Consensus 154 ~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~ 185 (339)
..+|... +|. ...+..+...+..
T Consensus 581 ~~~lm~~--~P~-------~~~l~~i~~~l~~ 603 (618)
T PF01347_consen 581 YLILMRC--NPS-------PSVLQRIAQSLWN 603 (618)
T ss_dssp HHHHHHT------------HHHHHHHHHHHTT
T ss_pred HHHHHhc--CCC-------HHHHHHHHHHHhh
Confidence 8777662 222 1235556666654
No 242
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=83.19 E-value=7 Score=29.97 Aligned_cols=32 Identities=13% Similarity=0.031 Sum_probs=28.1
Q ss_pred ChHHHHHhhhcCCHHHHHHHHHHHHHHhccCC
Q 048113 263 VMPGLLQLSVDGTWRAKNMARDLLLLLRDCSS 294 (339)
Q Consensus 263 ~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 294 (339)
++..|.+-+.+.++.++.+|+.+|.+++..+.
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~ 70 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN 70 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence 57788888999999999999999999988664
No 243
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=83.03 E-value=6.1 Score=28.64 Aligned_cols=83 Identities=13% Similarity=0.084 Sum_probs=60.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhc
Q 048113 42 APLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASS 121 (339)
Q Consensus 42 ~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~ 121 (339)
...+..+.++.+.+|..|+..|+.|... .. ....-..+++..+...|.++++-+-.+|...|..|+...+..
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~-~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~------ 77 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIES-KS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE------ 77 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHc-CC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH------
Confidence 4456778888889999999999999994 33 222223466777888888888889999999999988654432
Q ss_pred chHHHHHHHhcC
Q 048113 122 GAIQRLVEILNG 133 (339)
Q Consensus 122 g~i~~Lv~ll~~ 133 (339)
+++.|++...+
T Consensus 78 -vl~~L~~~y~~ 88 (92)
T PF10363_consen 78 -VLPILLDEYAD 88 (92)
T ss_pred -HHHHHHHHHhC
Confidence 46666665544
No 244
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=82.89 E-value=9.2 Score=29.75 Aligned_cols=67 Identities=16% Similarity=0.202 Sum_probs=54.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhcc---CCHHHHHHHHHHHHHhccC
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCS---QDYEAIEAALLSLLSLACG 69 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~---~~~~~~~~A~~~L~~Ls~~ 69 (339)
..|-..|+++++.++..|+..|-.+..+ .+..+.....+..|+.++.. .++.++..++..+...+..
T Consensus 40 raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 40 RAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999987 55566666777788888865 4789999999999887764
No 245
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=82.82 E-value=9.1 Score=30.12 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=54.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhcc------CCHHHHHHHHHHHHHhcc
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCS------QDYEAIEAALLSLLSLAC 68 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~A~~~L~~Ls~ 68 (339)
+.+...|.++++.++..|+..|-.+.++ .+..+...+.+..|+++++. .++.++...+..+..-+.
T Consensus 41 rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 41 RLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3577888999999999999999998887 66677778888899998853 467899988888876665
No 246
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=82.76 E-value=58 Score=32.99 Aligned_cols=135 Identities=17% Similarity=0.113 Sum_probs=89.0
Q ss_pred cCChHHHHHHhccC--------CHHHHHHHHHHHHHhcc--CCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHH
Q 048113 38 RGIIAPLISMLCSQ--------DYEAIEAALLSLLSLAC--GSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLI 107 (339)
Q Consensus 38 ~g~i~~Lv~lL~~~--------~~~~~~~A~~~L~~Ls~--~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~n 107 (339)
.|+++-++..|... ++.-.+.|++.+.++.. ..+.--..+.+.=.++.+++.++++..-++..||..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 67888888888321 23334556666666554 223334445555567778888888888899999999988
Q ss_pred HhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhc--CcHHHHHHHhhc
Q 048113 108 LSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSS--GVTYCLLQLIHS 185 (339)
Q Consensus 108 Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~--g~i~~Lv~ll~~ 185 (339)
++.+- +....-..+.+.....+++ ++.+++..|+.||.-+-.+.+....+.+. +.++.|+.+-..
T Consensus 487 ~eeDf--kd~~ill~aye~t~ncl~n-----------n~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~ 553 (970)
T COG5656 487 IEEDF--KDNGILLEAYENTHNCLKN-----------NHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNT 553 (970)
T ss_pred HHHhc--ccchHHHHHHHHHHHHHhc-----------CCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhccc
Confidence 85422 2222334456666777777 78899999999999998877666666554 455555555444
No 247
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.73 E-value=21 Score=37.56 Aligned_cols=247 Identities=13% Similarity=0.030 Sum_probs=142.9
Q ss_pred cCCCHHHHHHHHHHHHHHHH-H--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC--CcchhhHHhhcCChH
Q 048113 10 LNGERETQIQAANELGKLSR-R--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACG--SERNKIRIVKSGIVP 84 (339)
Q Consensus 10 ~s~~~~~~~~a~~~L~~l~~-~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~--~~~~~~~i~~~g~i~ 84 (339)
++.+.+.+...+..+..+-. + |.....+.-.+|.++.-+......+|..-+..|..-... .-..++. -
T Consensus 477 kaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvncvPeqEL-------l 549 (2799)
T KOG1788|consen 477 KAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPEQEL-------L 549 (2799)
T ss_pred HhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcHHHH-------H
Confidence 46677777777777766543 3 666667788888888777766555665555544321110 0111221 1
Q ss_pred HHHHhhcCC-ChhHHHHHHHHHHHHhc-CccchHHHHhcchHHHHHHHhcCC-----CCCC-------C-Cc--------
Q 048113 85 VLLEVLQCQ-STTLIELTVAAMLILSS-CLENKLEIASSGAIQRLVEILNGD-----LADD-------D-NS-------- 141 (339)
Q Consensus 85 ~Lv~lL~~~-~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~-----~~~~-------~-~~-------- 141 (339)
.|+-+|+.+ +..+..-.+.....|.. +...|..+.+-|.++.|...++.+ .+.+ + +.
T Consensus 550 SLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvsehydrnpss~sf~~~ 629 (2799)
T KOG1788|consen 550 SLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEHYDRNPSSPSFKQH 629 (2799)
T ss_pred HHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHHhhcCCCCchhhhc
Confidence 344556655 33333333444455554 445688888999999998877652 1111 1 10
Q ss_pred -------------c--CCCCHHHHH------HHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHH
Q 048113 142 -------------Y--GRISVQAKI------DAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIAL 199 (339)
Q Consensus 142 -------------~--~~~~~~~~~------~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~ 199 (339)
+ +++..++.. -.-.+|..+.+ +.+|.+.+.++.++..++.++-+ ++-+...+.+
T Consensus 630 ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpflin----dehRSslLri 705 (2799)
T KOG1788|consen 630 LDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLIN----DEHRSSLLRI 705 (2799)
T ss_pred cccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeeec----hHHHHHHHHH
Confidence 1 122212211 12344555555 66888888888878877777754 3445556666
Q ss_pred HHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCCh------------HHHHHHHHHHHHhhccCchhHHHHHHhcCChHHH
Q 048113 200 LENIVSSSEDALQEIAATCGAIRALVETIEEGSP------------QCKEHAVAILLLICKSCRDKYRSSILKEGVMPGL 267 (339)
Q Consensus 200 L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~------------~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L 267 (339)
+..++...+.. +. ...+..+|+.|+++-. .......+++|.+...++. .+..+.++++...|
T Consensus 706 vscLitvdpkq----vh-hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngs-aqrvFgeatGFslL 779 (2799)
T KOG1788|consen 706 VSCLITVDPKQ----VH-HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGS-AQRVFGEATGFSLL 779 (2799)
T ss_pred HHHHhccCccc----cc-HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCch-heeehhccccHHHH
Confidence 66444444431 11 2457778888887421 2334556788888755544 67778889999888
Q ss_pred HHhhhc
Q 048113 268 LQLSVD 273 (339)
Q Consensus 268 ~~ll~~ 273 (339)
...++.
T Consensus 780 lttLht 785 (2799)
T KOG1788|consen 780 LTTLHT 785 (2799)
T ss_pred HHHHHH
Confidence 877653
No 248
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=82.66 E-value=8.2 Score=30.49 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=54.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhc-cCCHHHHHHHHHHHHHhcc
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLC-SQDYEAIEAALLSLLSLAC 68 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~ 68 (339)
..|...|.++++.++..|+..|--+.++ ....+.+.+.+..|+.+++ ..++.++...+..+..-+.
T Consensus 44 ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 44 RALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 3577888999999999999999988887 5566777889999999886 4577899999888877765
No 249
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=82.61 E-value=55 Score=32.69 Aligned_cols=249 Identities=12% Similarity=0.112 Sum_probs=147.2
Q ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCC--HHHHHHHHHHHHHhccCCcchhhHHhhcCChHHH
Q 048113 9 LLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQD--YEAIEAALLSLLSLACGSERNKIRIVKSGIVPVL 86 (339)
Q Consensus 9 L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~--~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~L 86 (339)
|...+.+++.+=...|..........++..-+++.|+..+..++ .++.......-.-+.. ++ .+.+.+|.|
T Consensus 263 l~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~--~e-----yq~~i~p~l 335 (690)
T KOG1243|consen 263 LRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDE--EE-----YQVRIIPVL 335 (690)
T ss_pred cccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccc--cc-----cccchhhhH
Confidence 34455666655555555533334455566677778877776654 2333333333333333 12 677899999
Q ss_pred HHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CC
Q 048113 87 LEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQ 165 (339)
Q Consensus 87 v~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~ 165 (339)
++++.+.+..+|..-+.-+-+... .-...+.+....|.+..-+.+ .++.+++.++..+..|+.. .+
T Consensus 336 ~kLF~~~Dr~iR~~LL~~i~~~i~--~Lt~~~~~d~I~phv~~G~~D-----------Tn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 336 LKLFKSPDRQIRLLLLQYIEKYID--HLTKQILNDQIFPHVALGFLD-----------TNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred HHHhcCcchHHHHHHHHhHHHHhh--hcCHHhhcchhHHHHHhhccc-----------CCHHHHHHHHHHHHHHHhhhch
Confidence 999999998888755444433332 223445567788888888878 7999999999998888652 22
Q ss_pred ChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHH
Q 048113 166 LISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLL 245 (339)
Q Consensus 166 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 245 (339)
+ -.....+..+ .-++. +.+..++-+..-+|+ -...+-. ..+...-.+.+..+-++++-...+..+..+++.
T Consensus 403 ~---~Ln~Ellr~~-ar~q~-d~~~~irtntticlg-ki~~~l~---~~~R~~vL~~aftralkdpf~paR~a~v~~l~a 473 (690)
T KOG1243|consen 403 R---NLNGELLRYL-ARLQP-DEHGGIRTNTTICLG-KIAPHLA---ASVRKRVLASAFTRALKDPFVPARKAGVLALAA 473 (690)
T ss_pred h---hhcHHHHHHH-HhhCc-cccCcccccceeeec-ccccccc---hhhhccccchhhhhhhcCCCCCchhhhhHHHhh
Confidence 1 1111112222 22232 235666666655555 3333211 111112223444445666666677888888877
Q ss_pred hhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHh
Q 048113 246 ICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLR 290 (339)
Q Consensus 246 l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~ 290 (339)
-+..... .-+...++|.++.+.-+.+..++..|-..+..+-
T Consensus 474 t~~~~~~----~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 474 TQEYFDQ----SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred cccccch----hhhhhhccccccccccCcccchhhHHHHHHHHHH
Confidence 7655322 2245568899988888888888888777665543
No 250
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=82.39 E-value=42 Score=31.20 Aligned_cols=173 Identities=18% Similarity=0.089 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHh-----h----------------------c-CCChhHHHHHHH
Q 048113 52 DYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEV-----L----------------------Q-CQSTTLIELTVA 103 (339)
Q Consensus 52 ~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~l-----L----------------------~-~~~~~~~~~a~~ 103 (339)
...+...|+.-|...+. .+..+..+...+.++.++.- + + ++...-+..|+.
T Consensus 155 ~D~lv~~al~FL~~v~~-~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~d 233 (370)
T PF08506_consen 155 YDILVSKALQFLSSVAE-SPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACD 233 (370)
T ss_dssp GHHHHHHHHHHHHHHHT-SHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHc-chhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHH
Confidence 34566778888887776 44444333222333333321 1 1 111335778888
Q ss_pred HHHHHhcCccch-HHHHhcchHHHHHHHh-cCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCCh-------------H
Q 048113 104 AMLILSSCLENK-LEIASSGAIQRLVEIL-NGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLI-------------S 168 (339)
Q Consensus 104 ~L~nLs~~~~~~-~~i~~~g~i~~Lv~ll-~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~-------------~ 168 (339)
.+..|+...+.. ..+ -.+.+..++.-. .++. .+...+..|+..+..|+...... .
T Consensus 234 fl~~L~~~~~~~v~~i-~~~~i~~~l~~y~~~~~---------~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 234 FLRSLCKKFEKQVTSI-LMQYIQQLLQQYASNPS---------NNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-TT---------T-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred HHHHHHHHHhHHHHHH-HHHHHHHHHHHHhhCCc---------ccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 888887532211 111 112233332211 2322 67788888999999997644321 1
Q ss_pred HHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHH
Q 048113 169 PIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAIL 243 (339)
Q Consensus 169 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 243 (339)
.+...-++|.|. .+.+..+-++..|+..+. ..... -.+..+. +.+|.+++.|.+++.-+...|+.++
T Consensus 304 ~Ff~~~v~peL~---~~~~~~piLka~aik~~~-~Fr~~-l~~~~l~---~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 304 DFFSQHVLPELQ---PDVNSHPILKADAIKFLY-TFRNQ-LPKEQLL---QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHTCHHHH----SS-S-HHHHHHHHHHHH-HHGGG-S-HHHHH---HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHhHHHhc---ccCCCCcchHHHHHHHHH-HHHhh-CCHHHHH---HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 222222233332 122224556677777766 33322 2223333 5899999999999988888888764
No 251
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=81.98 E-value=2.4 Score=30.77 Aligned_cols=67 Identities=18% Similarity=0.098 Sum_probs=54.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCc
Q 048113 5 LMDNLLNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSE 71 (339)
Q Consensus 5 Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~ 71 (339)
.+..|.++.+.+|..++..|+++... ........+++..+...|+++++-+=-+|.+.|..|+...+
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 45667788899999999999999987 41333346777778889999999999999999999998433
No 252
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=81.44 E-value=11 Score=37.43 Aligned_cols=133 Identities=14% Similarity=0.225 Sum_probs=87.5
Q ss_pred cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHh
Q 048113 80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHN 159 (339)
Q Consensus 80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~n 159 (339)
..++|.|.+.++..+..+++.++..+...+..-+ ...++.-.+|++-.+...+ .+..++.+++.++..
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~t----------t~~~vkvn~L~c~~~ 455 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKT----------TNLYVKVNVLPCLAG 455 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcc----------cchHHHHHHHHHHHH
Confidence 3466777777788888899999998888875433 3334555688888875443 688999999999998
Q ss_pred hcCCCCChHHHHhcCcHHHHHHHhhcc-ccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCC
Q 048113 160 LSTCHQLISPIVSSGVTYCLLQLIHSS-EKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGS 232 (339)
Q Consensus 160 Ls~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~ 232 (339)
+. +.+-..-+++.+..+++.. ..++.+...++.+..+.....+.+ ..+.- ..++|.++-+...+.
T Consensus 456 l~------q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~-~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 456 LI------QRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMA-ENVLPLLIPLSVAPS 521 (700)
T ss_pred HH------HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeeh-hhhhhhhhhhhhccc
Confidence 87 2222223444444444332 235778888888888444444444 23332 578888888877655
No 253
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.31 E-value=20 Score=34.97 Aligned_cols=121 Identities=13% Similarity=0.168 Sum_probs=71.2
Q ss_pred cCChHHHHHH-hccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCC-ChhHHHHHHHHHHHHhcCccch
Q 048113 38 RGIIAPLISM-LCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQ-STTLIELTVAAMLILSSCLENK 115 (339)
Q Consensus 38 ~g~i~~Lv~l-L~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~ 115 (339)
.|+|..|+.. .++.+.++++.|.-+|+-.|+.++ ..++..+.+|..+ ++-+|...+.+|.-.+.....+
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~---------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~ 620 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR---------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK 620 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecCc---------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH
Confidence 5667777665 566677888888888877777422 3445566666544 5667776666666555444333
Q ss_pred HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC--CCCChHHHHhcCcHHHHHHHhhcc
Q 048113 116 LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST--CHQLISPIVSSGVTYCLLQLIHSS 186 (339)
Q Consensus 116 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~--~~~~~~~i~~~g~i~~Lv~ll~~~ 186 (339)
. ++..|-.+... .+.-+|..|+-++.-+.. +++.-... .+++..+.+++.+.
T Consensus 621 ~------a~diL~~L~~D-----------~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~K 674 (926)
T COG5116 621 V------ATDILEALMYD-----------TNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVDK 674 (926)
T ss_pred H------HHHHHHHHhhC-----------cHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhhh
Confidence 3 34444445555 577788888888776643 22221111 24455666666553
No 254
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=80.84 E-value=31 Score=28.55 Aligned_cols=134 Identities=19% Similarity=0.193 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHH--------HHHHHHhcC------ChHHHHH-HhccCCHHHHHHHHHHHHHhccCCcchhhHHhh-
Q 048113 16 TQIQAANELGKLSRR--------QKHKLVERG------IIAPLIS-MLCSQDYEAIEAALLSLLSLACGSERNKIRIVK- 79 (339)
Q Consensus 16 ~~~~a~~~L~~l~~~--------~~~~i~~~g------~i~~Lv~-lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~- 79 (339)
+|..|+.+|..+++. ++..+.-.+ .-+.|+. ++.++++.+|..|+.++..+-.+.... -...+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~-L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPF-LAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHH-HHHHHh
Confidence 578888888888875 555554333 5555655 567789999999999999888753221 11111
Q ss_pred cC----C---------------hHHHHHhhcCC-ChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHH----HHhcCCC
Q 048113 80 SG----I---------------VPVLLEVLQCQ-STTLIELTVAAMLILSSCLENKLEIASSGAIQRLV----EILNGDL 135 (339)
Q Consensus 80 ~g----~---------------i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv----~ll~~~~ 135 (339)
.. . -..|+..|+.+ +..+....+.++..|....+.... ..|.++.++ .++.+
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL--~~~ll~~~v~~v~~~l~~-- 156 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL--PPGLLTEVVTQVRPLLRH-- 156 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc--CHhHHHHHHHHHHHHHhc--
Confidence 11 1 13444555554 566777888888888876665321 245444444 45556
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHhhcCC
Q 048113 136 ADDDNSYGRISVQAKIDAIATLHNLSTC 163 (339)
Q Consensus 136 ~~~~~~~~~~~~~~~~~a~~~L~nLs~~ 163 (339)
.|++++..++.++..+...
T Consensus 157 ---------~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 157 ---------RDPNVRVAALSCLGALLSV 175 (182)
T ss_pred ---------CCCcHHHHHHHHHHHHHcC
Confidence 7888999998888887653
No 255
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=80.19 E-value=32 Score=28.42 Aligned_cols=131 Identities=19% Similarity=0.163 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhccC-Ccch----hhHHh------hcCChHHHHH-hhcCCChhHHHHHHHHHHHHhcCccchHHHH--h
Q 048113 55 AIEAALLSLLSLACG-SERN----KIRIV------KSGIVPVLLE-VLQCQSTTLIELTVAAMLILSSCLENKLEIA--S 120 (339)
Q Consensus 55 ~~~~A~~~L~~Ls~~-~~~~----~~~i~------~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~--~ 120 (339)
+|..|+.+|..+++. ++.. +..+. ....-+.|+. ++.++++.+|..|+.++..+.... +..+. +
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs--k~~L~~Ae 79 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS--KPFLAQAE 79 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc--HHHHHHHH
Confidence 577788888888874 1111 11111 1223444444 556678899999999998876532 21111 0
Q ss_pred --------------------cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCChHHHHhcCcHHHH
Q 048113 121 --------------------SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQLISPIVSSGVTYCL 179 (339)
Q Consensus 121 --------------------~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~L 179 (339)
......|+..++.+ .+..+....+++|..|... +-.|- +.|.++.+
T Consensus 80 ~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E----------~~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~ 146 (182)
T PF13251_consen 80 ESKGPSGSFTSLSSTLASMIMELHRGLLLALQAE----------KSPPVLTQLLKCLAVLVQATPYHRL---PPGLLTEV 146 (182)
T ss_pred hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc----------cccHHHHHHHHHHHHHHccCChhhc---CHhHHHHH
Confidence 22345677777774 5788888999999999774 33332 23555554
Q ss_pred H----HHhhccccCchHHHHHHHHHHH
Q 048113 180 L----QLIHSSEKSSGLTEKAIALLEN 202 (339)
Q Consensus 180 v----~ll~~~~~~~~~~~~a~~~L~n 202 (339)
+ .++.+ .+.+++..++.+++.
T Consensus 147 v~~v~~~l~~--~d~~v~v~~l~~~~~ 171 (182)
T PF13251_consen 147 VTQVRPLLRH--RDPNVRVAALSCLGA 171 (182)
T ss_pred HHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 4 44444 357888888888883
No 256
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=78.47 E-value=16 Score=34.56 Aligned_cols=225 Identities=12% Similarity=0.062 Sum_probs=110.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCCc-chhhHHh
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCS-QDYEAIEAALLSLLSLACGSE-RNKIRIV 78 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~-~~~~~i~ 78 (339)
..|+.++.|.|+.+|...-..|.++-.. ..+.++...+...+.+++.. .+.......+..++.+-.+.. ..++..
T Consensus 136 ~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh- 214 (409)
T PF01603_consen 136 KKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEH- 214 (409)
T ss_dssp HHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHH-
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHH-
Confidence 3578888999999999999999998765 55555555666667777654 344555666666766666422 111111
Q ss_pred hcCChHHHHHhhcCCCh-hHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113 79 KSGIVPVLLEVLQCQST-TLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL 157 (339)
Q Consensus 79 ~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L 157 (339)
..=....|+++...+.- .....-..++......++.-. ...+..+++..-. .++.=...-+.-+
T Consensus 215 ~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~----~~~i~~llk~WP~-----------t~s~Kev~FL~el 279 (409)
T PF01603_consen 215 KQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLA----EPVIKGLLKHWPK-----------TNSQKEVLFLNEL 279 (409)
T ss_dssp HHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGH----HHHHHHHHHHS-S-----------S-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhH----HHHHHHHHHhCCC-----------CCchhHHHHHHHH
Confidence 00012334444444421 122222233333332222111 1134555555544 3333333344444
Q ss_pred HhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhh-CCcHHHHHHHhh-----c
Q 048113 158 HNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAAT-CGAIRALVETIE-----E 230 (339)
Q Consensus 158 ~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~-~g~i~~Lv~lL~-----~ 230 (339)
..+.. .++..-.-+..-....+...+.+. +.++.+.|+.... ++.....+.+. ...+|.+..-|. +
T Consensus 280 ~~il~~~~~~~f~~i~~~lf~~la~ci~S~--h~qVAErAl~~w~-----n~~~~~li~~~~~~i~p~i~~~L~~~~~~H 352 (409)
T PF01603_consen 280 EEILEVLPPEEFQKIMVPLFKRLAKCISSP--HFQVAERALYFWN-----NEYFLSLISQNSRVILPIIFPALYRNSKNH 352 (409)
T ss_dssp HHHHTT--HHHHHHHHHHHHHHHHHHHTSS--SHHHHHHHHGGGG-----SHHHHHHHHCTHHHHHHHHHHHHSSTTSS-
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHC-----CHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 44433 121111111112344555556653 5677777765444 22222222110 124455555543 3
Q ss_pred CChHHHHHHHHHHHHhhccC
Q 048113 231 GSPQCKEHAVAILLLICKSC 250 (339)
Q Consensus 231 ~~~~~~~~a~~~L~~l~~~~ 250 (339)
-+..++..|..++..+..-+
T Consensus 353 Wn~~Vr~~a~~vl~~l~~~d 372 (409)
T PF01603_consen 353 WNQTVRNLAQNVLKILMEMD 372 (409)
T ss_dssp SSTTHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHHHHHhC
Confidence 46889999999988887654
No 257
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=77.64 E-value=77 Score=31.33 Aligned_cols=232 Identities=14% Similarity=0.116 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcch----hhHHhhcCC---hHHHH
Q 048113 17 QIQAANELGKLSRRQKHKLV--ERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERN----KIRIVKSGI---VPVLL 87 (339)
Q Consensus 17 ~~~a~~~L~~l~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~----~~~i~~~g~---i~~Lv 87 (339)
.......+..|+......+. ....+-.|+.+|+.-+.+-......-+.. .. ... ...+...|- +..+.
T Consensus 287 ~~~~~~~l~~L~~~~~~~~~~~~~~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~--~~~r~~~~Dal~~~GT~~a~~~i~ 363 (574)
T smart00638 287 EVQIVEVLKHLVQDIASDVQEPAAAKFLRLVRLLRTLSEEQLEQLWRQLYE-KK--KKARRIFLDAVAQAGTPPALKFIK 363 (574)
T ss_pred hhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCHHHHHHHHHHHHh-CC--HHHHHHHHHHHHhcCCHHHHHHHH
Confidence 34455666666655323333 23456667777777666555555554443 21 222 334444554 55556
Q ss_pred HhhcCCChhHHHHHHHHHHHHh-c-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC---
Q 048113 88 EVLQCQSTTLIELTVAAMLILS-S-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST--- 162 (339)
Q Consensus 88 ~lL~~~~~~~~~~a~~~L~nLs-~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~--- 162 (339)
..+.++...-. .+..++..+. . ..+..+ .++.+..+++++.. ...+.++..|+.++.++..
T Consensus 364 ~~i~~~~~~~~-ea~~~~~~~~~~~~~Pt~~------~l~~l~~l~~~~~~-------~~~~~l~~sa~l~~~~lv~~~c 429 (574)
T smart00638 364 QWIKNKKITPL-EAAQLLAVLPHTARYPTEE------ILKALFELAESPEV-------QKQPYLRESALLAYGSLVRRYC 429 (574)
T ss_pred HHHHcCCCCHH-HHHHHHHHHHHhhhcCCHH------HHHHHHHHhcCccc-------cccHHHHHHHHHHHHHHHHHHh
Confidence 66666532222 2223333322 2 123333 57778888876311 1355666666666666543
Q ss_pred -CCCChHHHHhcCcHHHHHHHhhcc--ccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhh-c--CChHHH
Q 048113 163 -CHQLISPIVSSGVTYCLLQLIHSS--EKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIE-E--GSPQCK 236 (339)
Q Consensus 163 -~~~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~-~--~~~~~~ 236 (339)
+.+.+...+....++.+...|... ..+..-+...+.+|+ |+- + ...++.+..++. + .+..++
T Consensus 430 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG-N~g-~----------~~~i~~l~~~l~~~~~~~~~iR 497 (574)
T smart00638 430 VNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG-NAG-H----------PSSIKVLEPYLEGAEPLSTFIR 497 (574)
T ss_pred cCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh-ccC-C----------hhHHHHHHHhcCCCCCCCHHHH
Confidence 333322222234666677666542 123344566778888 432 1 233445555554 2 346789
Q ss_pred HHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcC--CHHHHHHHHHHH
Q 048113 237 EHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDG--TWRAKNMARDLL 286 (339)
Q Consensus 237 ~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~A~~~L 286 (339)
..|+++|..++...+.. +-+.|..+..+. ++++|..|..+|
T Consensus 498 ~~Av~Alr~~a~~~p~~---------v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 498 LAAILALRNLAKRDPRK---------VQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred HHHHHHHHHHHHhCchH---------HHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 99999999887654443 345566665554 455666555444
No 258
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=77.44 E-value=16 Score=28.49 Aligned_cols=66 Identities=12% Similarity=0.093 Sum_probs=52.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhccC--CHHHHHHHHHHHHHhcc
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCSQ--DYEAIEAALLSLLSLAC 68 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~ 68 (339)
..|-..|.++++.++..|+..|--+.++ .+..+...+.+..|..+++.. .+.++...+..+..-+.
T Consensus 40 r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 40 RLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 3567788899999999999999999887 556667788889999888764 33488888888876665
No 259
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=77.21 E-value=45 Score=36.42 Aligned_cols=101 Identities=10% Similarity=0.028 Sum_probs=64.1
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113 4 MLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK 79 (339)
Q Consensus 4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~ 79 (339)
.++..|......+|.+|.++|..+..- -.+..+..|+. .-+.+.+..+|+.|+..++..--..++.-..+.
T Consensus 820 ~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh----~R~~DssasVREAaldLvGrfvl~~~e~~~qyY- 894 (1692)
T KOG1020|consen 820 LILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVH----GRLNDSSASVREAALDLVGRFVLSIPELIFQYY- 894 (1692)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHH----HhhccchhHHHHHHHHHHhhhhhccHHHHHHHH-
Confidence 455666777888999999999998764 22233333333 334456778999999888855543344322222
Q ss_pred cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc
Q 048113 80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE 113 (339)
Q Consensus 80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~ 113 (339)
..+..-+..+...+|..+..++..++...+
T Consensus 895 ----~~i~erIlDtgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 895 ----DQIIERILDTGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred ----HHHHhhcCCCchhHHHHHHHHHHHHHHhCC
Confidence 224444455667789999999988885333
No 260
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=77.20 E-value=29 Score=27.93 Aligned_cols=144 Identities=11% Similarity=0.066 Sum_probs=75.8
Q ss_pred ChHHHHHhhcCC-ChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhh
Q 048113 82 IVPVLLEVLQCQ-STTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNL 160 (339)
Q Consensus 82 ~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nL 160 (339)
.++.|+++|..+ +..+|.+++++|+.|-.-|+.+......+.-. ..-.+ .+........ .+.
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~---~~~~~-----------~~~~~~~~~l---~~~ 73 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDS---KSSEN-----------SNDESTDISL---PMM 73 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCc---ccccc-----------ccccchhhHH---hhc
Confidence 356777888766 68899999999999987776654422211000 00000 1111111111 111
Q ss_pred cCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHH
Q 048113 161 STCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAV 240 (339)
Q Consensus 161 s~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~ 240 (339)
. ....-+...-..++..|++.|++.+ ...-...++.++.+.+........... ..++|.+++.+++.++..++.-.
T Consensus 74 ~-~~~~~ee~y~~vvi~~L~~iL~D~s-Ls~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~ 149 (160)
T PF11865_consen 74 G-ISPSSEEYYPTVVINALMRILRDPS-LSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYF 149 (160)
T ss_pred c-CCCchHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHH
Confidence 1 1113344444457788888888753 233334455555533322222222333 25789999999876667777655
Q ss_pred HHHHHh
Q 048113 241 AILLLI 246 (339)
Q Consensus 241 ~~L~~l 246 (339)
.-|..+
T Consensus 150 ~qL~~l 155 (160)
T PF11865_consen 150 QQLADL 155 (160)
T ss_pred HHHHHH
Confidence 555444
No 261
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=76.98 E-value=58 Score=35.66 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=15.6
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHHhcCc
Q 048113 83 VPVLLEVLQCQSTTLIELTVAAMLILSSCL 112 (339)
Q Consensus 83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~ 112 (339)
+..++..+..+...+|..|+.+|.++...+
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~ive~D 847 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIVEAD 847 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhcC
Confidence 344444445444555556666665555444
No 262
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=76.88 E-value=8.1 Score=29.62 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=45.1
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHh-cCChHHHHHHhccC--------CHHHHHHHHHHHHHh
Q 048113 2 EEMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVE-RGIIAPLISMLCSQ--------DYEAIEAALLSLLSL 66 (339)
Q Consensus 2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~-~g~i~~Lv~lL~~~--------~~~~~~~A~~~L~~L 66 (339)
.++|.+.|++.++.++.++++.|..++.. .+..+.. ...|..+.++=... ...+|..|-.++..+
T Consensus 40 ~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 40 LEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 57899999999999999999999999986 4555544 55666666654322 224555555555444
No 263
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.74 E-value=1e+02 Score=32.24 Aligned_cols=275 Identities=13% Similarity=0.107 Sum_probs=147.6
Q ss_pred cHHHHHHH----cCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhc-cCCHHHHHHHHHHHHHhccCCcchhh
Q 048113 2 EEMLMDNL----LNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLC-SQDYEAIEAALLSLLSLACGSERNKI 75 (339)
Q Consensus 2 ~~~Lv~~L----~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~~~ 75 (339)
|-+|+... +|.---.|.+||+.+..++.. .+..-.-..+.+...+.|. +.+-.++..|+-+|..+-.+.+.+..
T Consensus 460 E~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e 539 (1010)
T KOG1991|consen 460 EYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADE 539 (1010)
T ss_pred HHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhh
Confidence 44444444 456667899999999999954 3322233344555566555 66778999999999999987666666
Q ss_pred HHhhc--CChHHHHHhhcCCChhHHHHHHHH-HHHHhc-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHH
Q 048113 76 RIVKS--GIVPVLLEVLQCQSTTLIELTVAA-MLILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKI 151 (339)
Q Consensus 76 ~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~~-L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~ 151 (339)
.+..+ +.+..|+.+.+.-+.+.....+.. ++..+. -.+....+ .........++++...+ .++.+.+-..
T Consensus 540 ~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL-~q~La~~F~k~l~~~~~-----~~~~~ddk~i 613 (1010)
T KOG1991|consen 540 KVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVEL-CQNLAETFLKVLQTSED-----EDESDDDKAI 613 (1010)
T ss_pred hHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHH-HHHHHHHHHHHHhccCC-----CCccchHHHH
Confidence 66554 556666666555433333333322 233332 11111111 23345566677764110 1113444555
Q ss_pred HHHHHHHhhcC---CCCChHHHHhc--Cc-HHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHH
Q 048113 152 DAIATLHNLST---CHQLISPIVSS--GV-TYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALV 225 (339)
Q Consensus 152 ~a~~~L~nLs~---~~~~~~~i~~~--g~-i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv 225 (339)
.|+++|..++. +-++...+.+. .. .+.+-.+|++. -.+.-+.++.+..+.....++....+= |..+-+.
T Consensus 614 aA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~--i~dfyeE~~ei~~~~t~~~~~Isp~mW---~ll~li~ 688 (1010)
T KOG1991|consen 614 AASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKND--ITDFYEELLEIVSSLTFLSKEISPIMW---GLLELIL 688 (1010)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHhhhhhhhcccCHHHH---HHHHHHH
Confidence 66666666543 33444444332 33 34444445543 356677777766633222333222222 4566777
Q ss_pred HHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhc-CChHHHHHh----hhc--CCHHHHHHHHHHHHHHhc
Q 048113 226 ETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKE-GVMPGLLQL----SVD--GTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 226 ~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-g~i~~L~~l----l~~--~~~~~~~~A~~~L~~l~~ 291 (339)
+.++...-..-....-+|.|....+.+ .+... .-...+..+ +.+ +...-.+.|+.++..+.-
T Consensus 689 e~~~~~~~dyf~d~~~~l~N~vt~g~~----~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL 757 (1010)
T KOG1991|consen 689 EVFQDDGIDYFTDMMPALHNYVTYGTP----SLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIIL 757 (1010)
T ss_pred HHHhhhhHHHHHHHHHHHhhheeeCch----hhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 777776666667777888888766433 23332 223333332 333 233334567777766543
No 264
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.64 E-value=22 Score=33.96 Aligned_cols=155 Identities=14% Similarity=0.139 Sum_probs=86.4
Q ss_pred hcCChHHHHHhhc----CCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHH
Q 048113 79 KSGIVPVLLEVLQ----CQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAI 154 (339)
Q Consensus 79 ~~g~i~~Lv~lL~----~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~ 154 (339)
+.|...-++..+. +++...+..|+..|.|.++.-+.+..=-..-.+..++.-|-++ .+.++.-.++
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~----------~~~~V~leam 321 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDD----------LNEEVQLEAM 321 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcC----------CccHHHHHHH
Confidence 3455555554442 3456789999999999998633222111223455555544332 6788999999
Q ss_pred HHHHhhcCCCCChHHHHh-cCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCH--hhhHHHHh-hCCcHHHHHHHhhc
Q 048113 155 ATLHNLSTCHQLISPIVS-SGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSE--DALQEIAA-TCGAIRALVETIEE 230 (339)
Q Consensus 155 ~~L~nLs~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~--~~~~~i~~-~~g~i~~Lv~lL~~ 230 (339)
.+|..+...-.+....-- ..+.-.+-.++.+. +++++..+...++ .++... ..+..+.+ .-+...+++-.+++
T Consensus 322 ~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se--~~~~R~aa~~Lfg-~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d 398 (533)
T KOG2032|consen 322 KCLTMVLEKASNDDLESYLLNIALRLRTLFDSE--DDKMRAAAFVLFG-ALAKLAGGGWEEFFTEQVKKRLAPLLLHLQD 398 (533)
T ss_pred HHHHHHHHhhhhcchhhhchhHHHHHHHHHHhc--ChhhhhhHHHHHH-HHHHHcCCCchhhhHHHHHhccccceeeeCC
Confidence 988887654333322111 12344566666663 4677887776666 454322 22222221 12344566667777
Q ss_pred CChHHHHHHHHHHHHhh
Q 048113 231 GSPQCKEHAVAILLLIC 247 (339)
Q Consensus 231 ~~~~~~~~a~~~L~~l~ 247 (339)
+++.+-. |++.....|
T Consensus 399 ~~p~va~-ACr~~~~~c 414 (533)
T KOG2032|consen 399 PNPYVAR-ACRSELRTC 414 (533)
T ss_pred CChHHHH-HHHHHHHhc
Confidence 7776655 555555554
No 265
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=76.58 E-value=53 Score=28.92 Aligned_cols=180 Identities=17% Similarity=0.159 Sum_probs=108.5
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHH-------HHHHHH------hc-CChHHHHHHhccC--CHHHHHHHHHHHHHhccC
Q 048113 6 MDNLLNGERETQIQAANELGKLSRR-------QKHKLV------ER-GIIAPLISMLCSQ--DYEAIEAALLSLLSLACG 69 (339)
Q Consensus 6 v~~L~s~~~~~~~~a~~~L~~l~~~-------~~~~i~------~~-g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~ 69 (339)
+.+|.+..+.+=..|++.|..+... .+..+. .. |..+-+..++=-+ ++...+.+++.|..|+..
T Consensus 13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~ 92 (262)
T PF14225_consen 13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPL 92 (262)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHHHHhcC
Confidence 5678888888889999998887643 333222 12 4555554443222 445566777777777762
Q ss_pred -------CcchhhHHhhcCChHHHHHhhcCCC----hhHHHHHHHHHHHHhcCcc--chHHHH-----------------
Q 048113 70 -------SERNKIRIVKSGIVPVLLEVLQCQS----TTLIELTVAAMLILSSCLE--NKLEIA----------------- 119 (339)
Q Consensus 70 -------~~~~~~~i~~~g~i~~Lv~lL~~~~----~~~~~~a~~~L~nLs~~~~--~~~~i~----------------- 119 (339)
++++|-.+.-.+.+|.++.-+++++ .......+..|..++.... +-..+.
T Consensus 93 ~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~ 172 (262)
T PF14225_consen 93 PDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQ 172 (262)
T ss_pred CCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHH
Confidence 2223444444566788888777776 1334455577777764322 111111
Q ss_pred -------------hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhcc
Q 048113 120 -------------SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSS 186 (339)
Q Consensus 120 -------------~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~ 186 (339)
+...+--|+.+|.+ +.+-++...+.+|+.+-..-+.+.. ...+.+.++.++++.
T Consensus 173 v~~~l~~~f~P~~~~~~l~~Ll~lL~n-----------~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t- 239 (262)
T PF14225_consen 173 VVSYLREAFFPDHEFQILTFLLGLLEN-----------GPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQT- 239 (262)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhC-----------CcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCC-
Confidence 12234445566655 6778888888888888665444443 444678888888876
Q ss_pred ccCchHHHHHHHHHHH
Q 048113 187 EKSSGLTEKAIALLEN 202 (339)
Q Consensus 187 ~~~~~~~~~a~~~L~n 202 (339)
+.-..|+.+|.+
T Consensus 240 ----~~~~eAL~VLd~ 251 (262)
T PF14225_consen 240 ----DLWMEALEVLDE 251 (262)
T ss_pred ----ccHHHHHHHHHH
Confidence 335567777763
No 266
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=76.24 E-value=6.2 Score=40.20 Aligned_cols=71 Identities=18% Similarity=0.232 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHHhccCCcchh-----------------------------------hHHhhcCChHHHHHhhcCCC--
Q 048113 52 DYEAIEAALLSLLSLACGSERNK-----------------------------------IRIVKSGIVPVLLEVLQCQS-- 94 (339)
Q Consensus 52 ~~~~~~~A~~~L~~Ls~~~~~~~-----------------------------------~~i~~~g~i~~Lv~lL~~~~-- 94 (339)
+++++..|+.++.|+.+..|++| ..+...+||..|+++|+-..
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~ 754 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPP 754 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCC
Confidence 88999999999999988654332 23456689999999998653
Q ss_pred ---hhHHHHHHHHHHHHhcCccchHHHHhcc
Q 048113 95 ---TTLIELTVAAMLILSSCLENKLEIASSG 122 (339)
Q Consensus 95 ---~~~~~~a~~~L~nLs~~~~~~~~i~~~g 122 (339)
..++..|+.+|.-|+.++..++.+.+..
T Consensus 755 t~aD~IRalAc~~L~GLaR~~tVrQIltKLp 785 (1516)
T KOG1832|consen 755 TTADCIRALACRVLLGLARDDTVRQILTKLP 785 (1516)
T ss_pred CcHHHHHHHHHHHHhccccCcHHHHHHHhCc
Confidence 4589999999999999999988777543
No 267
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=75.98 E-value=23 Score=32.50 Aligned_cols=138 Identities=11% Similarity=0.142 Sum_probs=77.0
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccC-------CHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113 6 MDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQ-------DYEAIEAALLSLLSLACGSERNKIRIV 78 (339)
Q Consensus 6 v~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~A~~~L~~Ls~~~~~~~~~i~ 78 (339)
.+.+.+++...|..|+..|+.=.. =+..+|.++.++... +.......++++..|.. |+.-....-
T Consensus 184 t~a~~~~~~~~r~~aL~sL~tD~g-------l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~-N~~l~le~Y 255 (343)
T cd08050 184 TEALVGSNEEKRREALQSLRTDPG-------LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD-NPNLHLEPY 255 (343)
T ss_pred HHHHhCCCHHHHHHHHHHhccCCC-------chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc-CCCCchHHh
Confidence 334445555555555555432110 123455556655443 35556667788888888 666555444
Q ss_pred hcCChHHHHHhhcCC----------ChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHH
Q 048113 79 KSGIVPVLLEVLQCQ----------STTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQ 148 (339)
Q Consensus 79 ~~g~i~~Lv~lL~~~----------~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~ 148 (339)
-+-.+|.++.++-.. ...+|..|+.+|..++..-.....-.....+..+.+.+.++. ....
T Consensus 256 lh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~---------~~~~ 326 (343)
T cd08050 256 LHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPK---------KPLT 326 (343)
T ss_pred HHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCC---------CCcc
Confidence 455888888877321 236899999999998842211111113334557777666531 2333
Q ss_pred HHHHHHHHHHhh
Q 048113 149 AKIDAIATLHNL 160 (339)
Q Consensus 149 ~~~~a~~~L~nL 160 (339)
...-|+..|..|
T Consensus 327 ~~YGAi~GL~~l 338 (343)
T cd08050 327 THYGAIVGLSAL 338 (343)
T ss_pred hhhHHHHHHHHh
Confidence 355566666555
No 268
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=74.09 E-value=68 Score=28.94 Aligned_cols=208 Identities=9% Similarity=0.043 Sum_probs=142.5
Q ss_pred hhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc-chH---HHHhcchHHHHHHHhcCCCCCCCCccCCC-CHH
Q 048113 74 KIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE-NKL---EIASSGAIQRLVEILNGDLADDDNSYGRI-SVQ 148 (339)
Q Consensus 74 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~-~~~---~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~-~~~ 148 (339)
.+.+.++|..+.|+..+...+-+.+..++.+..|+-..+- .+. .+.... .+.+-.+++.. . .++
T Consensus 72 tqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~-~e~~~~lv~~~----------~~~~~ 140 (342)
T KOG1566|consen 72 TQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETN-PEILDNLVKGY----------ENTPE 140 (342)
T ss_pred HHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhC-HHHHHHHHhhh----------ccchH
Confidence 3467789999999999999888888888888888764332 222 121111 22222333332 3 355
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhh--CCc-HHHHH
Q 048113 149 AKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAAT--CGA-IRALV 225 (339)
Q Consensus 149 ~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~--~g~-i~~Lv 225 (339)
....+-..|....+.+...+.+....-+......++.+ .-++...|..+....+..+.....++... ... .+.--
T Consensus 141 iaL~cg~mlrEcirhe~LakiiL~s~~~~~FF~~vq~p--~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~ 218 (342)
T KOG1566|consen 141 IALTCGNMLRECIRHEFLAKIILESTNFEKFFLYVQLP--NFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYE 218 (342)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHcchhHHHHHHHHhcc--chHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHH
Confidence 66656666666666777777888888888888888875 46888888888887777776666555531 122 33355
Q ss_pred HHhhcCChHHHHHHHHHHHHhhccCchh--HHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCC
Q 048113 226 ETIEEGSPQCKEHAVAILLLICKSCRDK--YRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSS 294 (339)
Q Consensus 226 ~lL~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 294 (339)
.++.+++--++..+...+..+-.+.++. ..+.+..-..+..++.++++.+..+|..|=..-+.+..+++
T Consensus 219 ~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 219 KLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 6888888888899999998887654431 11222224678889999999999999999999998887664
No 269
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=73.89 E-value=30 Score=27.06 Aligned_cols=70 Identities=17% Similarity=0.159 Sum_probs=47.9
Q ss_pred ChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHh-cC-cc--cchHHHHHHHHH
Q 048113 263 VMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDA-EG-DT--VAGTTLRLVEEM 332 (339)
Q Consensus 263 ~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~-~~--~~~~a~~~l~~~ 332 (339)
++..|.+-+.++++.++..|+.+|..+.+++....+.......-+..+...+.. .. .. +++++..++..-
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 577788889999999999999999988876632224444455666666665552 22 22 777777766654
No 270
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.60 E-value=1.1e+02 Score=31.33 Aligned_cols=272 Identities=15% Similarity=0.119 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCCh
Q 048113 18 IQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQST 95 (339)
Q Consensus 18 ~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 95 (339)
.+|...|...++. +...|...+++..+++...-+ |++. ...-+.+.+-+.+..+-+-|...|.
T Consensus 311 s~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~Vvlp-------------N~~l--R~eDeElFED~pleYiRRDlEGsDv 375 (960)
T KOG1992|consen 311 SKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLP-------------NLIL--REEDEELFEDNPLEYIRRDLEGSDV 375 (960)
T ss_pred HHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhccc-------------cccc--chhhHHHhccCHHHHHHHhcccCCc
Confidence 3445555555543 444445555555555443322 2332 2233456666677777777877665
Q ss_pred hH-HHHHHHHHHHHhcCccchHHHHhcchHHHHHH-HhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCC-ChHHH--
Q 048113 96 TL-IELTVAAMLILSSCLENKLEIASSGAIQRLVE-ILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQ-LISPI-- 170 (339)
Q Consensus 96 ~~-~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~-ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~-~~~~i-- 170 (339)
+. |..|+..+.-|+..-+.+..=+-.+-++.+++ .-.+++ .+..-+..++.....++.... .+.-+
T Consensus 376 dTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS---------~nWk~kd~aiyL~talaik~~t~~~Gvts 446 (960)
T KOG1992|consen 376 DTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPS---------GNWKKKDRAIYLVTALAIKGQTAKHGVTS 446 (960)
T ss_pred chhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCC---------ccccccchhhhhhHHHHhhcchhhcceee
Confidence 55 56677778888865544332222334555554 444443 455666666666666665322 11111
Q ss_pred -Hhc-CcHHHHH----HHhhcc--ccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHH
Q 048113 171 -VSS-GVTYCLL----QLIHSS--EKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAI 242 (339)
Q Consensus 171 -~~~-g~i~~Lv----~ll~~~--~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~ 242 (339)
.+. +.+.-+. .-|.++ .+.+-++..++.-+. .-+..-++..+. ..+|.++++|+.++.-+...|+.+
T Consensus 447 tn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~--~FR~ql~~~~lm---~~~p~li~~L~a~s~vvhsYAA~a 521 (960)
T KOG1992|consen 447 TNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIY--TFRNQLGKEHLM---ALLPRLIRFLEAESRVVHSYAAIA 521 (960)
T ss_pred ccccccHHHHHHHHhhHHhccCccccccchhhcccceee--eecccCChHHHH---HHHHHHHHhccCcchHHHHHHHHH
Confidence 111 2222222 222221 112222333332222 122223343443 379999999999999999999999
Q ss_pred HHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCccc-
Q 048113 243 LLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTV- 321 (339)
Q Consensus 243 L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~- 321 (339)
+-.+-.-..+ ....+...+-+++.+. .++.+|-+.-.. ..+.-..-.+..||+.+.+..+.+
T Consensus 522 iEkil~vre~-~~~~if~~~~iap~~~--------------~ll~nLf~a~s~--p~~~EneylmKaImRii~i~~~~i~ 584 (960)
T KOG1992|consen 522 IEKLLTVREN-SNAKIFGAEDIAPFVE--------------ILLTNLFKALSL--PGKAENEYLMKAIMRIISILQSAII 584 (960)
T ss_pred HHhccccccC-ccccccchhhcchHHH--------------HHHHHHHHhccC--CcccccHHHHHHHHHHHHhCHHhhh
Confidence 8665432212 1222333333332211 112222211110 122233455566677666555444
Q ss_pred --chHHHHHHHHHHHH
Q 048113 322 --AGTTLRLVEEMIAK 335 (339)
Q Consensus 322 --~~~a~~~l~~~v~~ 335 (339)
.+.+.+-|+++|..
T Consensus 585 p~~~~~l~~Lteiv~~ 600 (960)
T KOG1992|consen 585 PHAPELLRQLTEIVEE 600 (960)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 66666777776654
No 271
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=72.59 E-value=8.1 Score=28.83 Aligned_cols=42 Identities=14% Similarity=0.332 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHH
Q 048113 193 TEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCK 236 (339)
Q Consensus 193 ~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 236 (339)
....+..+. .++..|+-...+++ .|+++.|+.+|.+.+..+.
T Consensus 63 Ld~~Ik~l~-~La~~P~LYp~lv~-l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 63 LDEEIKKLS-VLATAPELYPELVE-LGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHH-HccCChhHHHHHHH-cCCHHHHHHHHCCCCccee
Confidence 455677788 78999999999997 8999999999998776543
No 272
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=72.33 E-value=74 Score=32.59 Aligned_cols=101 Identities=14% Similarity=0.112 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhh-------hH
Q 048113 233 PQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLK-------NE 305 (339)
Q Consensus 233 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~-------~~ 305 (339)
..+......+|..++..+++...+.+.+.++...++.++-++++++.+.|..+|+...+... +.+.+. ..
T Consensus 495 ~~~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~---R~e~i~~ll~~~~~~ 571 (727)
T PF12726_consen 495 GQITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG---RLEAIQALLQSNFSP 571 (727)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc---HHHHHHHHHHHhHHH
Confidence 34566778889999988877777777778999999999999999999999999999986332 444332 12
Q ss_pred HHHHHHHHHH----hcC-cccchHHHHHHHHHHHHhc
Q 048113 306 LVEQIMQEID----AEG-DTVAGTTLRLVEEMIAKLS 337 (339)
Q Consensus 306 ~~~~i~~~~~----~~~-~~~~~~a~~~l~~~v~~~~ 337 (339)
.+..+...+. ... ++.. ++-|++.+||..|.
T Consensus 572 tL~ai~~~l~~~~~~~~~~p~p-r~vr~~~DIi~~Lc 607 (727)
T PF12726_consen 572 TLSAINWSLRQLTKLKFFEPCP-RMVRCLMDIIEVLC 607 (727)
T ss_pred HHHHHHHHHHHHHhhhhhcchH-HHHHHHHHHHHHHc
Confidence 2222222222 122 2222 38888888888875
No 273
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=72.19 E-value=63 Score=27.75 Aligned_cols=159 Identities=14% Similarity=0.067 Sum_probs=101.9
Q ss_pred HhcchHHHHHHHhcCCCCCC-CCccC-CCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhcccc--------
Q 048113 119 ASSGAIQRLVEILNGDLADD-DNSYG-RISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEK-------- 188 (339)
Q Consensus 119 ~~~g~i~~Lv~ll~~~~~~~-~~~~~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~-------- 188 (339)
.....+.+|+.+.+-..--. +.+.+ ..+......++..+..|...+++...+.+.+.++.+...|..-++
T Consensus 48 ~~~kF~kRLl~FyrP~~~rfs~~~~~~~~~~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~ 127 (226)
T PF14666_consen 48 KSTKFFKRLLSFYRPFKYRFSNLDLNTKNNQKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHD 127 (226)
T ss_pred hcChHHHHHHHhcCCccccccccccccccchHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccc
Confidence 34557888887775321000 00011 124677778999999999999998888899999999988865310
Q ss_pred ---C-----chHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHh
Q 048113 189 ---S-----SGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILK 260 (339)
Q Consensus 189 ---~-----~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 260 (339)
+ ..+...=...++ .++.++.+.+.+-+ .+++..+.++.+..+. ......++.++=-..+...|
T Consensus 128 ~lfs~~~l~~tl~~~Yf~~IG-~lS~~~~Gl~lLe~-~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~R----- 198 (226)
T PF14666_consen 128 PLFSPQRLSTTLSRGYFLFIG-VLSSTPNGLKLLER-WNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHPR----- 198 (226)
T ss_pred cccCHHHHHhhHHHHHHHHHH-HHhCChhHHHHHHH-CCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHHH-----
Confidence 0 112222336777 78899999877776 8999999999987533 22222344444211111112
Q ss_pred cCChHHHHHhhhcCCHHHHHHHHHHHHHHh
Q 048113 261 EGVMPGLLQLSVDGTWRAKNMARDLLLLLR 290 (339)
Q Consensus 261 ~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~ 290 (339)
..|-+.+.+++..+|..|...|+-+.
T Consensus 199 ----~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 199 ----IILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 23456688999999999999887654
No 274
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=71.91 E-value=86 Score=29.19 Aligned_cols=139 Identities=16% Similarity=0.172 Sum_probs=77.2
Q ss_pred HHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHh--cCChHHHHHHh---ccCCHHHHHHHHHHHHHhccCCcchh--
Q 048113 3 EMLMDNLLNGER-ETQIQAANELGKLSRRQKHKLVE--RGIIAPLISML---CSQDYEAIEAALLSLLSLACGSERNK-- 74 (339)
Q Consensus 3 ~~Lv~~L~s~~~-~~~~~a~~~L~~l~~~~~~~i~~--~g~i~~Lv~lL---~~~~~~~~~~A~~~L~~Ls~~~~~~~-- 74 (339)
|++-.-+..+|. .-|..|+..++.+++.....+.. .+.+..++.-. .+.+..-+..|+..+..|+.. ....
T Consensus 213 EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k-~~t~~~ 291 (370)
T PF08506_consen 213 EYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASK-GSTTKS 291 (370)
T ss_dssp HHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBS-S--BTT
T ss_pred HHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhh-hccccC
Confidence 344444443333 45677888888888763333222 23344443311 134667888999999999984 3221
Q ss_pred -----------hHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccC
Q 048113 75 -----------IRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYG 143 (339)
Q Consensus 75 -----------~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~ 143 (339)
..+...-++|-|- -=.+..|-++..|+..+......-+ ++.+ .+.+|.++..|.+
T Consensus 292 Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~-~~~l--~~~~~~l~~~L~~---------- 357 (370)
T PF08506_consen 292 GVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP-KEQL--LQIFPLLVNHLQS---------- 357 (370)
T ss_dssp B-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HHHH--HHHHHHHHHHTTS----------
T ss_pred CcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC-HHHH--HHHHHHHHHHhCC----------
Confidence 1222222333332 1012346678888888877765322 2322 4589999999999
Q ss_pred CCCHHHHHHHHHHH
Q 048113 144 RISVQAKIDAIATL 157 (339)
Q Consensus 144 ~~~~~~~~~a~~~L 157 (339)
++.-+...|+.++
T Consensus 358 -~~~vv~tyAA~~i 370 (370)
T PF08506_consen 358 -SSYVVHTYAAIAI 370 (370)
T ss_dssp -S-HHHHHHHHHHH
T ss_pred -CCcchhhhhhhhC
Confidence 7888888887764
No 275
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=71.54 E-value=26 Score=34.84 Aligned_cols=148 Identities=10% Similarity=0.074 Sum_probs=85.7
Q ss_pred HhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHH
Q 048113 119 ASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIA 198 (339)
Q Consensus 119 ~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~ 198 (339)
...+.+|.|++++.. .+..+|..-+.-+-+. -+..-+.+++.-++|.+..-+.++ ++.+++.++.
T Consensus 327 yq~~i~p~l~kLF~~-----------~Dr~iR~~LL~~i~~~--i~~Lt~~~~~d~I~phv~~G~~DT--n~~Lre~Tlk 391 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKS-----------PDRQIRLLLLQYIEKY--IDHLTKQILNDQIFPHVALGFLDT--NATLREQTLK 391 (690)
T ss_pred cccchhhhHHHHhcC-----------cchHHHHHHHHhHHHH--hhhcCHHhhcchhHHHHHhhcccC--CHHHHHHHHH
Confidence 346689999999998 6777776544333222 233445667777888888888875 5788999888
Q ss_pred HHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHH
Q 048113 199 LLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRA 278 (339)
Q Consensus 199 ~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~ 278 (339)
.+. .++..= +.. .++ ...+..+-++-.+....++.+..-||..++....+..|..+ .+.++.+-+++.-+..
T Consensus 392 sm~-~La~kL-~~~-~Ln-~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~v----L~~aftralkdpf~pa 463 (690)
T KOG1243|consen 392 SMA-VLAPKL-SKR-NLN-GELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRV----LASAFTRALKDPFVPA 463 (690)
T ss_pred HHH-HHHhhh-chh-hhc-HHHHHHHHhhCccccCcccccceeeecccccccchhhhccc----cchhhhhhhcCCCCCc
Confidence 777 333211 111 222 11222222222233466788888888888766433222221 2333444456666666
Q ss_pred HHHHHHHHHHH
Q 048113 279 KNMARDLLLLL 289 (339)
Q Consensus 279 ~~~A~~~L~~l 289 (339)
|..+...+..-
T Consensus 464 R~a~v~~l~at 474 (690)
T KOG1243|consen 464 RKAGVLALAAT 474 (690)
T ss_pred hhhhhHHHhhc
Confidence 76666665544
No 276
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=71.32 E-value=30 Score=34.58 Aligned_cols=126 Identities=12% Similarity=0.129 Sum_probs=82.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH-hccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113 4 MLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISM-LCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI 82 (339)
Q Consensus 4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~l-L~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~ 82 (339)
.|..-+++.+..+|..++..+..++...-..++..-++|.+-.+ ++..+..++.+++.++..+.. ......-..-
T Consensus 393 lL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q----~lD~~~v~d~ 468 (700)
T KOG2137|consen 393 LLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ----RLDKAAVLDE 468 (700)
T ss_pred HHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH----HHHHHHhHHH
Confidence 34444556777888888888888877622445566667777654 455677888888888888873 2222222234
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcC
Q 048113 83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNG 133 (339)
Q Consensus 83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~ 133 (339)
+.++.+.....++.+.-....+..++.........+....++|.++-+...
T Consensus 469 ~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~ 519 (700)
T KOG2137|consen 469 LLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVA 519 (700)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhc
Confidence 555666666777888887777877777655544445556677777766655
No 277
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=71.15 E-value=0.76 Score=43.45 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=42.4
Q ss_pred hcCChHHHHHHHHHHHHhhccCchhHHHHHHh-cCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113 229 EEGSPQCKEHAVAILLLICKSCRDKYRSSILK-EGVMPGLLQLSVDGTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 229 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 291 (339)
.+.++++++.+..++.+++.+.. .|...+. ...-..+++++....+++-+.+..++..+-+
T Consensus 338 a~~n~~l~~qa~~~v~~~~~~~~--~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 338 AHKNPELQRQALLAVGNLAFCLE--NRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred cccChHHHHHHHHHHHHheeccc--ccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 34679999999999999998853 3443333 3345556777777777777777777766543
No 278
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=70.37 E-value=38 Score=33.78 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=70.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccC---CHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHH
Q 048113 10 LNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQ---DYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVL 86 (339)
Q Consensus 10 ~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~L 86 (339)
..++.+.+..++++|+|+-. ...++.|..++... +..+|..|+++|..++...+.. +.+.|
T Consensus 500 ~~~~~~~~~~~LkaLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l 563 (618)
T PF01347_consen 500 SRGDEEEKIVYLKALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREIL 563 (618)
T ss_dssp HTT-HHHHHHHHHHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHH
T ss_pred hccCHHHHHHHHHHhhccCC--------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHH
Confidence 35677888889999988752 35777777777665 6789999999999887743322 23557
Q ss_pred HHhhcCC--ChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113 87 LEVLQCQ--STTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL 157 (339)
Q Consensus 87 v~lL~~~--~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L 157 (339)
.+++.+. +.++|..|...|.. ..+. ...+..+...+..+ .+..+.......|
T Consensus 564 ~~I~~n~~e~~EvRiaA~~~lm~---~~P~------~~~l~~i~~~l~~E----------~~~QV~sfv~S~L 617 (618)
T PF01347_consen 564 LPIFMNTTEDPEVRIAAYLILMR---CNPS------PSVLQRIAQSLWNE----------PSNQVASFVYSHL 617 (618)
T ss_dssp HHHHH-TTS-HHHHHHHHHHHHH---T---------HHHHHHHHHHHTT-----------S-HHHHHHHHHHH
T ss_pred HHHhcCCCCChhHHHHHHHHHHh---cCCC------HHHHHHHHHHHhhC----------chHHHHHHHHHhc
Confidence 8877654 57788888666544 2121 12467777777664 5666665544443
No 279
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=70.07 E-value=36 Score=26.77 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=56.6
Q ss_pred cHHHHHHHhhc-CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHH-HHHhhhc---CCHHHHHHHHHHHHHHhc
Q 048113 220 AIRALVETIEE-GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPG-LLQLSVD---GTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 220 ~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~-L~~ll~~---~~~~~~~~A~~~L~~l~~ 291 (339)
++..|-+-|.+ .++.++..|+..|-.+..+.+..+...+...+.+.. |++++.. ....++.+.+.++...+.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 55666666654 578888889999988888887778888888899987 9999863 345789999999988775
No 280
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=69.96 E-value=6.4 Score=29.36 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHH
Q 048113 56 IEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLI 98 (339)
Q Consensus 56 ~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~ 98 (339)
....++.+..|+. .|+....+++.|+++.|+.+|.+++.++.
T Consensus 63 Ld~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 63 LDEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 4567788999999 68889999999999999999999876554
No 281
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=69.28 E-value=35 Score=25.51 Aligned_cols=71 Identities=20% Similarity=0.351 Sum_probs=50.8
Q ss_pred cHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhh------hcCCHHHHHHHHHHHHHHh
Q 048113 220 AIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLS------VDGTWRAKNMARDLLLLLR 290 (339)
Q Consensus 220 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll------~~~~~~~~~~A~~~L~~l~ 290 (339)
++..|.+-|.++++..+..|+..|-.+..+.++.+...+.....+..+++.. ...+..+++++..++...+
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 5566677777888999999999999999888777777776665555554421 1235778888888776553
No 282
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=69.15 E-value=81 Score=27.79 Aligned_cols=173 Identities=19% Similarity=0.155 Sum_probs=88.3
Q ss_pred HHHHHHhcCChH-HHHHHhcc--CCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCC--ChhHHHHHHHHH
Q 048113 31 QKHKLVERGIIA-PLISMLCS--QDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQ--STTLIELTVAAM 105 (339)
Q Consensus 31 ~~~~i~~~g~i~-~Lv~lL~~--~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L 105 (339)
.+..+.+.++++ .|+.+|.+ +++.+...+++.|.+|+.. -.. + .... +...+.......
T Consensus 32 v~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P--~~~-----------~---~~~~~~~~~~~~~~~~l~ 95 (266)
T PF04821_consen 32 VRRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWP--IEL-----------L---VESQPKDKNQRRNIPELL 95 (266)
T ss_pred HHHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCC--HHH-----------h---ccCCCCChHHHHHHHHHH
Confidence 345555555555 56665544 3678888888888888882 111 0 1111 111222111111
Q ss_pred HHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhc
Q 048113 106 LILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHS 185 (339)
Q Consensus 106 ~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~ 185 (339)
..+ ...|..+.+.+++..++.++...-..+....++.+..+.+..+..+.|+..-++.-..-...+
T Consensus 96 ~~l---~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~----------- 161 (266)
T PF04821_consen 96 KYL---QSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSD----------- 161 (266)
T ss_pred HHH---HHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccc-----------
Confidence 111 134666667777777776664321111122333566778888888889866543221111111
Q ss_pred cccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC-ChHHHHHHHHHHHHhhccC
Q 048113 186 SEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEG-SPQCKEHAVAILLLICKSC 250 (339)
Q Consensus 186 ~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~ 250 (339)
.+...+...+++|. + .|+...|+.+.++. ........+.++..+..+.
T Consensus 162 --~~~~~~d~li~~l~--------------~-~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~ 210 (266)
T PF04821_consen 162 --EDSSLHDQLIWALF--------------E-SGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQ 210 (266)
T ss_pred --hhHHHHHHHHHHHH--------------H-cCHHHHHHHHHhCccccchhhHHHHHHHHHHcCC
Confidence 12334444444444 2 57777777777764 2333335555655555443
No 283
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=68.38 E-value=33 Score=35.71 Aligned_cols=128 Identities=14% Similarity=0.186 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc-CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHH
Q 048113 191 GLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE-GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQ 269 (339)
Q Consensus 191 ~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ 269 (339)
.++..++-+|++.|-.++ .+.. ..+|.|++-|+- ....++.+.+.++..+|... .+....-+|.+..
T Consensus 946 ~vra~~vvTlakmcLah~----~LaK--r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y------Tam~d~YiP~I~~ 1013 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHD----RLAK--RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY------TAMTDRYIPMIAA 1013 (1529)
T ss_pred HHHHHHHHHHHHHHhhhh----HHHH--HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH------HHHHHHhhHHHHH
Confidence 466677777884333333 3332 468899998875 44677888888888888652 2233457899999
Q ss_pred hhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHHHH
Q 048113 270 LSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIAK 335 (339)
Q Consensus 270 ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v~~ 335 (339)
-+.++++-+++.+...|.+|-....+. .....+-+.|..+.-..++++.-|...+.++..+
T Consensus 1014 ~L~Dp~~iVRrqt~ilL~rLLq~~~vK-----w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1014 SLCDPSVIVRRQTIILLARLLQFGIVK-----WNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhhhhh-----cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 999999999999999998887655321 3345555555555345699999999999988764
No 284
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=66.50 E-value=1.3e+02 Score=29.02 Aligned_cols=296 Identities=13% Similarity=0.092 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhcCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhc
Q 048113 14 RETQIQAANELGKLSRRQK-HKLVERGIIAPLISMLCSQ-DYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQ 91 (339)
Q Consensus 14 ~~~~~~a~~~L~~l~~~~~-~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~ 91 (339)
...|.+|++.|+.....++ ..+ ..++...-.++..+ .++.|..+...|..+..+ ...+..... ..+.+.+.
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i--~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~-~~~~~~~~R----~~fF~~I~ 76 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSI--EEIWYAAKDLIDPNQPSEARRAALELLIACIKR-QDSSSGLMR----AEFFRDIS 76 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHH--HHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHc-cccccHHHH----HHHHHHHh
Confidence 4567778777777665521 111 22444444556554 667899999999999985 332211111 11222233
Q ss_pred C-CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCC-------------CCCCCc---cCCCCHHHHHHHH
Q 048113 92 C-QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDL-------------ADDDNS---YGRISVQAKIDAI 154 (339)
Q Consensus 92 ~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~-------------~~~~~~---~~~~~~~~~~~a~ 154 (339)
. +.++.-..-+.+|..|+.+...- ...+.+..+.|...+.... ...... ..+.+.......+
T Consensus 77 ~~~~~~d~~~~l~aL~~LT~~Grdi-~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll 155 (464)
T PF11864_consen 77 DPSNDDDFDLRLEALIALTDNGRDI-DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLL 155 (464)
T ss_pred cCCCchhHHHHHHHHHHHHcCCcCc-hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHH
Confidence 2 33433344456666666533322 2246777787877775410 000000 0000112222333
Q ss_pred HHHHhhcCCCC-ChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc--C
Q 048113 155 ATLHNLSTCHQ-LISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE--G 231 (339)
Q Consensus 155 ~~L~nLs~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~--~ 231 (339)
..+.|+.+... .-..-.-.+.+..++.+-..+. .+...+.|+.++-..++... +. .+.++.++..|-+ +
T Consensus 156 ~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts-~~~di~~~L~vldaii~y~~------iP-~~sl~~~i~vLCsi~~ 227 (464)
T PF11864_consen 156 QFLVNVIKFNFNYLDEDEISSLVDQICTICKSTS-SEDDIEACLSVLDAIITYGD------IP-SESLSPCIEVLCSIVN 227 (464)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHcCc------CC-hHHHHHHHHHHhhHhc
Confidence 33444433211 1111111133444444422221 22333444444441111110 00 1233444444432 3
Q ss_pred ChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc------CCHHHHHHHHHHHHHHhccCCCcchhhhhhh-
Q 048113 232 SPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD------GTWRAKNMARDLLLLLRDCSSFGSRSKQLKN- 304 (339)
Q Consensus 232 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~------~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~- 304 (339)
.....+.+-.++.||+.... +.. ++..|..++.+ .+..+-.-|+.++..+............-..
T Consensus 228 ~~~l~~~~w~~m~nL~~S~~--g~~------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~ 299 (464)
T PF11864_consen 228 SVSLCKPSWRTMRNLLKSHL--GHS------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSP 299 (464)
T ss_pred ccccchhHHHHHHHHHcCcc--HHH------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccH
Confidence 34666778888888886531 222 45677777732 2345567888888777655421111111111
Q ss_pred -HHHHHHHHHHHhcCcccchHHHHHHHHHH
Q 048113 305 -ELVEQIMQEIDAEGDTVAGTTLRLVEEMI 333 (339)
Q Consensus 305 -~~~~~i~~~~~~~~~~~~~~a~~~l~~~v 333 (339)
..+..+..-+...++.+.......+.+++
T Consensus 300 ~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 300 SSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 24444444444455555666666666655
No 285
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=66.13 E-value=31 Score=33.72 Aligned_cols=109 Identities=12% Similarity=0.187 Sum_probs=73.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhc-cCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHH
Q 048113 10 LNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLC-SQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLE 88 (339)
Q Consensus 10 ~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~ 88 (339)
.++|.++|..|+.+|.-++. -+...++..+++|. +.++.+|...+-+|+..|.+...+. ++..|-.
T Consensus 562 sD~nDDVrRAAViAlGfvc~------~D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~ 628 (926)
T COG5116 562 SDGNDDVRRAAVIALGFVCC------DDRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEA 628 (926)
T ss_pred ccCchHHHHHHHHheeeeEe------cCcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHH
Confidence 35677888888888877664 24556677788775 4588999999999998888533322 3455666
Q ss_pred hhcCCChhHHHHHHHHHHHHhc--CccchHHHHhcchHHHHHHHhcC
Q 048113 89 VLQCQSTTLIELTVAAMLILSS--CLENKLEIASSGAIQRLVEILNG 133 (339)
Q Consensus 89 lL~~~~~~~~~~a~~~L~nLs~--~~~~~~~i~~~g~i~~Lv~ll~~ 133 (339)
+...++.-+|..|+-++..+.. +++--+.+ .+.++.+.+++.+
T Consensus 629 L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~ 673 (926)
T COG5116 629 LMYDTNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVD 673 (926)
T ss_pred HhhCcHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhh
Confidence 6777777788888888877653 22222222 4567777777766
No 286
>PRK14707 hypothetical protein; Provisional
Probab=66.08 E-value=2.6e+02 Score=32.44 Aligned_cols=253 Identities=14% Similarity=0.082 Sum_probs=139.7
Q ss_pred hHHHHHHh-cc-CCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhh-cCCChhHHHHHHHHHHH-HhcCccchH
Q 048113 41 IAPLISML-CS-QDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVL-QCQSTTLIELTVAAMLI-LSSCLENKL 116 (339)
Q Consensus 41 i~~Lv~lL-~~-~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~n-Ls~~~~~~~ 116 (339)
+..+++-. +. ++.+++..+...-..++. .+.-+..+-.. +|..++.-+ +-++..--..++..|.. |+..+.-+.
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~~~q-~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~ 242 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAMDAQ-GVATVLNALCKWPDTPDCGNAVSALAERLADESRLRN 242 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcC-ChhhhcccchH-HHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHH
Confidence 44444433 32 477888888888888888 46666666433 444444444 44443334444455544 444433233
Q ss_pred HHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH-hhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHH
Q 048113 117 EIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH-NLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEK 195 (339)
Q Consensus 117 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~-nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~ 195 (339)
.+ +...+-..+.-|..- .+......++.+|. .++.+...++.+-.. .+-..++-|..+. +..+...
T Consensus 243 ~~-~~q~va~~lN~lsKw----------p~~~~C~~a~~~lA~rl~~~~~l~~al~~q-~vanalNalSKwp-d~~vc~~ 309 (2710)
T PRK14707 243 EL-KPQELGNALNALSKW----------ADTPVCAAAASALAERLVDDPGLRKALDPI-NVTQALNALSKWA-DLPVCAE 309 (2710)
T ss_pred hC-ChHHHHHHHHHHhcC----------CCchHHHHHHHHHHHHHhhhHHHHHhcCHH-HHHHHHhhhhcCC-CchHHHH
Confidence 33 444455555555442 45555555665555 455455544444332 3445566666654 5666666
Q ss_pred HHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc-CC-hHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc
Q 048113 196 AIALLENIVSSSEDALQEIAATCGAIRALVETIEE-GS-PQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD 273 (339)
Q Consensus 196 a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~ 273 (339)
|...|+.-+...++-++.+- .-.+...++-|.. ++ ......|...-..++.+ .+.++.+-..|+-..|-.+.+=
T Consensus 310 Aa~~la~rl~~d~~l~~~~~--~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d--~~l~~~l~~q~~a~~lNalsKW 385 (2710)
T PRK14707 310 AAIALAERLADDPELCKALN--ARGLSTALNALSKWPDNPVCAAAVSALAERLVAD--PELRKDLEPQGVSSVLNALSKW 385 (2710)
T ss_pred HHHHHHHHHhccHhhhhccc--hHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccC--HhhhcccchhHHHHHHhhhhcC
Confidence 66666657777776665442 3445666666654 33 44444444444555544 3466665545555555555554
Q ss_pred CCHHHHHHHHH-HHHHHhccCCCcchhhhhhhHHHHHHHHHHH
Q 048113 274 GTWRAKNMARD-LLLLLRDCSSFGSRSKQLKNELVEQIMQEID 315 (339)
Q Consensus 274 ~~~~~~~~A~~-~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 315 (339)
++..+-..|+. +-..+..+.+ ..+.++..++...+.-++
T Consensus 386 p~~~~c~~aa~~LA~~l~~d~~---l~~~~~~Q~van~lnals 425 (2710)
T PRK14707 386 PDTPVCAAAASALAEHVVDDLE---LRKGLDPQGVSNALNALA 425 (2710)
T ss_pred CCchHHHHHHHHHHHHhccChh---hhhhcchhhHHHHHHHhh
Confidence 44444444444 4466666655 677788888888777775
No 287
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.45 E-value=1.1e+02 Score=27.72 Aligned_cols=139 Identities=16% Similarity=0.257 Sum_probs=86.5
Q ss_pred hHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHH
Q 048113 123 AIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLE 201 (339)
Q Consensus 123 ~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~ 201 (339)
.+...+..|.+ .+......++..+..|+. +++....+.. .++-.+++-+++. ...+...|+.+++
T Consensus 89 al~~~l~~L~s-----------~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl--RS~VsraA~~t~~ 154 (334)
T KOG2933|consen 89 ALKQALKKLSS-----------DDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL--RSAVSRAACMTLA 154 (334)
T ss_pred HHHHHHHHhch-----------HHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh--HHHHHHHHHHHHH
Confidence 45666777777 788899999999999987 4444433332 2455666667663 4677778888777
Q ss_pred HhhcCCHhhhHHHHhhCCcHHHHHH-HhhcC---ChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHH
Q 048113 202 NIVSSSEDALQEIAATCGAIRALVE-TIEEG---SPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWR 277 (339)
Q Consensus 202 n~l~~~~~~~~~i~~~~g~i~~Lv~-lL~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~ 277 (339)
...+..+..... ....++. |+... +.=+++.|-.+|..+...-.+ . .+++.|+..+++.++.
T Consensus 155 difs~ln~~i~~------~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp---~-----~~L~~L~~~~~~~n~r 220 (334)
T KOG2933|consen 155 DIFSSLNNSIDQ------ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP---Q-----KLLRKLIPILQHSNPR 220 (334)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh---H-----HHHHHHHHHHhhhchh
Confidence 333322222222 2333343 34332 344677788888777754322 1 2477777778888999
Q ss_pred HHHHHHHHHHHH
Q 048113 278 AKNMARDLLLLL 289 (339)
Q Consensus 278 ~~~~A~~~L~~l 289 (339)
++..++.+..++
T Consensus 221 ~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 221 VRAKAALCFSRC 232 (334)
T ss_pred hhhhhhcccccc
Confidence 888877665444
No 288
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=65.29 E-value=1e+02 Score=27.43 Aligned_cols=118 Identities=17% Similarity=0.187 Sum_probs=67.9
Q ss_pred CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHH----hhh--------cCCHHHHHHHHHHH
Q 048113 219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQ----LSV--------DGTWRAKNMARDLL 286 (339)
Q Consensus 219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~----ll~--------~~~~~~~~~A~~~L 286 (339)
-++|.++.++++.++.++..++.+|..+....+......+...|..+.+.. .+. +.+..+-..|-.+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 468999999999999999999999999987654422122566675555443 333 34455667777777
Q ss_pred HHHhcc---CCCcchhhhhhhHHHHHHHHHHH--hc--CcccchHHHHHHHHHHHHh
Q 048113 287 LLLRDC---SSFGSRSKQLKNELVEQIMQEID--AE--GDTVAGTTLRLVEEMIAKL 336 (339)
Q Consensus 287 ~~l~~~---~~~~~~~~~~~~~~~~~i~~~~~--~~--~~~~~~~a~~~l~~~v~~~ 336 (339)
..|... .+...+.........+.|+..+. .+ ..++.....+-+..+|..|
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~l 255 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDEL 255 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHh
Confidence 777442 11111222333333344555543 11 2444444555555555544
No 289
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=64.55 E-value=93 Score=26.78 Aligned_cols=139 Identities=19% Similarity=0.135 Sum_probs=80.5
Q ss_pred HHHHH-hhcCCChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhc
Q 048113 84 PVLLE-VLQCQSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS 161 (339)
Q Consensus 84 ~~Lv~-lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs 161 (339)
|.|+. .-+..+++.+...+.+|..++.++ .+... +++.|..+... ++.....-+.+.+..+-
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~-----------~~~~~~~~~~rLl~~lw 66 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQ-----------GSLELRYVALRLLTLLW 66 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcC-----------CchhHHHHHHHHHHHHH
Confidence 44444 334557889999999999999877 44443 36667777766 45555455556565554
Q ss_pred CCCCChHHHHhcCcHHHHHHHh--h---ccc-c--CchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHh-hcCC
Q 048113 162 TCHQLISPIVSSGVTYCLLQLI--H---SSE-K--SSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETI-EEGS 232 (339)
Q Consensus 162 ~~~~~~~~i~~~g~i~~Lv~ll--~---~~~-~--~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~ 232 (339)
...+ +.. +.++.++..+ + ... . ..+........++..+...|+ . ....++.+...+ ++.+
T Consensus 67 ~~~~-r~f----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~-g~~ll~~ls~~L~~~~~ 135 (234)
T PF12530_consen 67 KAND-RHF----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----H-GVDLLPLLSGCLNQSCD 135 (234)
T ss_pred HhCc-hHH----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----h-HHHHHHHHHHHHhcccc
Confidence 3222 111 3344444331 1 111 1 112222222344434444444 1 134678888888 7788
Q ss_pred hHHHHHHHHHHHHhhcc
Q 048113 233 PQCKEHAVAILLLICKS 249 (339)
Q Consensus 233 ~~~~~~a~~~L~~l~~~ 249 (339)
+.++..++.+|..+|..
T Consensus 136 ~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 136 EVAQALALEALAPLCEA 152 (234)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88999999999999943
No 290
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=63.61 E-value=1e+02 Score=27.07 Aligned_cols=170 Identities=11% Similarity=0.106 Sum_probs=92.9
Q ss_pred CHHHHHHHHHHHHhhcCCCC--------ChHHHHhcCcHHHHHHHhhcccc--CchHHHHHHHHHHHhhcCCHhhhHHHH
Q 048113 146 SVQAKIDAIATLHNLSTCHQ--------LISPIVSSGVTYCLLQLIHSSEK--SSGLTEKAIALLENIVSSSEDALQEIA 215 (339)
Q Consensus 146 ~~~~~~~a~~~L~nLs~~~~--------~~~~i~~~g~i~~Lv~ll~~~~~--~~~~~~~a~~~L~n~l~~~~~~~~~i~ 215 (339)
+...-..++..|..|...+. ++-.+.=.+.+|.++.-+.++.+ .......++..|+ .++...
T Consensus 75 Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La-~~a~~~------- 146 (262)
T PF14225_consen 75 SSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALA-QVAEAQ------- 146 (262)
T ss_pred CCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH-HHHHhC-------
Confidence 33445556666666654322 22222223567777777766430 0133445556666 333110
Q ss_pred hhCCcHHHHHHHhhcC-ChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCC
Q 048113 216 ATCGAIRALVETIEEG-SPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSS 294 (339)
Q Consensus 216 ~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 294 (339)
+ ...+..+......+ -.....-...+...++...-++ .+...+-.|..++.++.+..|.....+|..+-...+
T Consensus 147 ~-~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d 220 (262)
T PF14225_consen 147 G-LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPD-----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVD 220 (262)
T ss_pred C-CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch-----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcccc
Confidence 1 22333444433332 2222232333333333322111 122357789999999999999999999999988766
Q ss_pred CcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHHHH
Q 048113 295 FGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIAK 335 (339)
Q Consensus 295 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v~~ 335 (339)
..+ ....+.+..+++.+ ..+....|..+|..+|.+
T Consensus 221 ~~~---~~~~dlispllrlL---~t~~~~eAL~VLd~~v~~ 255 (262)
T PF14225_consen 221 MRS---PHGADLISPLLRLL---QTDLWMEALEVLDEIVTR 255 (262)
T ss_pred CCC---CcchHHHHHHHHHh---CCccHHHHHHHHHHHHhh
Confidence 432 24455555555544 566777899999999875
No 291
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=63.61 E-value=1e+02 Score=26.92 Aligned_cols=72 Identities=19% Similarity=0.154 Sum_probs=45.9
Q ss_pred cCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHH-hhcCChHHHHHHHHHHHHhh
Q 048113 173 SGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVET-IEEGSPQCKEHAVAILLLIC 247 (339)
Q Consensus 173 ~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~l~ 247 (339)
.|-++.|.+++.++.-++=++..|+.+|.-....++..|..+++ .+..++.. +......+...-+..++.|.
T Consensus 110 ~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~---~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~ 182 (249)
T PF06685_consen 110 DGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQ---YFRELLNYFLERNPSFLWGSLVADICDLY 182 (249)
T ss_pred CCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH---HHHHHHHHHhccCchHHHHHHHHHHHhcC
Confidence 47788899999886555667788889998444556667777775 46666654 54443434444444444443
No 292
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=62.18 E-value=1.4e+02 Score=30.45 Aligned_cols=70 Identities=16% Similarity=0.087 Sum_probs=47.1
Q ss_pred CCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHH-hccC
Q 048113 218 CGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLL-RDCS 293 (339)
Q Consensus 218 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l-~~~~ 293 (339)
..+|+.|..+..++=+.++..++..+..|-...++. +...+..|+.-+.+....+-.+|...|..| +.++
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEq------E~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HP 373 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQ------ENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHP 373 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHH------HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCC
Confidence 357777777777777888899999998887665542 223455666666666666667777766555 4444
No 293
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=61.06 E-value=1.3e+02 Score=27.69 Aligned_cols=104 Identities=12% Similarity=0.043 Sum_probs=56.8
Q ss_pred ChHHHHHhhcCC-------ChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHH
Q 048113 82 IVPVLLEVLQCQ-------STTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAI 154 (339)
Q Consensus 82 ~i~~Lv~lL~~~-------~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~ 154 (339)
.+|.++.++... +-......+..+..|..++...-...=...+|.++..+-.+.-.. +....++...|..|+
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~-~~~~~~h~~LRd~AA 289 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCS-RPPDDNHWALRDYAA 289 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcC-CCCCchHHHHHHHHH
Confidence 468888877553 334455666777777776665333222336777776553310000 000115678999999
Q ss_pred HHHHhhcCCCCChHHHHhcCcHHHHHHHhhcc
Q 048113 155 ATLHNLSTCHQLISPIVSSGVTYCLLQLIHSS 186 (339)
Q Consensus 155 ~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~ 186 (339)
..|..+|..-.....-....++..+.+.+.+.
T Consensus 290 ~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~ 321 (343)
T cd08050 290 RLLAQICRKFSTSYNTLQPRITRTLLKALLDP 321 (343)
T ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCC
Confidence 99999986322211112223344566666654
No 294
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=60.82 E-value=1.2e+02 Score=26.93 Aligned_cols=66 Identities=24% Similarity=0.280 Sum_probs=46.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH-HHHH---HHhcCChHHHHH----Hhc--------cCCHHHHHHHHHHHHHh
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR-QKHK---LVERGIIAPLIS----MLC--------SQDYEAIEAALLSLLSL 66 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~---i~~~g~i~~Lv~----lL~--------~~~~~~~~~A~~~L~~L 66 (339)
+.+..++++.++..+..++..|..+..+ .... +...|..+.+-+ +|- .++..+...|.-+|..|
T Consensus 122 P~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L 201 (282)
T PF10521_consen 122 PPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSL 201 (282)
T ss_pred hhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHH
Confidence 4667788889999999999999999987 4444 667776554433 232 23456777777777777
Q ss_pred cc
Q 048113 67 AC 68 (339)
Q Consensus 67 s~ 68 (339)
..
T Consensus 202 ~~ 203 (282)
T PF10521_consen 202 LK 203 (282)
T ss_pred HH
Confidence 43
No 295
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.52 E-value=1.5e+02 Score=30.56 Aligned_cols=178 Identities=13% Similarity=0.141 Sum_probs=88.0
Q ss_pred CChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHH-HHHh-------hcCCChhHHHHHHHHHHHHh-
Q 048113 39 GIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPV-LLEV-------LQCQSTTLIELTVAAMLILS- 109 (339)
Q Consensus 39 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~-Lv~l-------L~~~~~~~~~~a~~~L~nLs- 109 (339)
..+|.++.+|++++..+-.+|+.++-.+-.-.+.+...+..++-+++ +..+ ++.+...-.+....++...-
T Consensus 498 ~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~ 577 (960)
T KOG1992|consen 498 ALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIIS 577 (960)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHH
Confidence 45788899999999999999999887665534444555665544433 2222 22332233344444444332
Q ss_pred cCccchHHHHhcchHHHHHH----HhcCCCCCCCCccCCCCHHHHHH---HHHHHH-hhcCCCCChHHHHhcCcHHHHHH
Q 048113 110 SCLENKLEIASSGAIQRLVE----ILNGDLADDDNSYGRISVQAKID---AIATLH-NLSTCHQLISPIVSSGVTYCLLQ 181 (339)
Q Consensus 110 ~~~~~~~~i~~~g~i~~Lv~----ll~~~~~~~~~~~~~~~~~~~~~---a~~~L~-nLs~~~~~~~~i~~~g~i~~Lv~ 181 (339)
..++.-... ....+..|.+ .-+++ .++..-.. +..++. ..|......-.-.+...+|.+-.
T Consensus 578 i~~~~i~p~-~~~~l~~Lteiv~~v~KNP----------s~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~ 646 (960)
T KOG1992|consen 578 ILQSAIIPH-APELLRQLTEIVEEVSKNP----------SNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQT 646 (960)
T ss_pred hCHHhhhhh-hhHHHHHHHHHHHHHhcCC----------CCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 222211000 1112333333 33454 45544433 333332 23333322233334445555555
Q ss_pred HhhccccCchHHHHHHHHHHHhhcCC-----HhhhHHH---------HhhCCcHHHHHHHhhc
Q 048113 182 LIHSSEKSSGLTEKAIALLENIVSSS-----EDALQEI---------AATCGAIRALVETIEE 230 (339)
Q Consensus 182 ll~~~~~~~~~~~~a~~~L~n~l~~~-----~~~~~~i---------~~~~g~i~~Lv~lL~~ 230 (339)
.|..+ -.+..-.++.+++ .+... ++....+ -++.|-+|+++++++.
T Consensus 647 Il~eD--I~EfiPYvfQlla-~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~a 706 (960)
T KOG1992|consen 647 ILSED--IQEFIPYVFQLLA-VLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQA 706 (960)
T ss_pred HHHHH--HHHHHHHHHHHHH-HHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHH
Confidence 66542 2455556666666 44322 2233222 2356889999998874
No 296
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=58.16 E-value=56 Score=24.39 Aligned_cols=68 Identities=12% Similarity=0.041 Sum_probs=43.5
Q ss_pred ChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHH--HhcC----cccchHHHHHHH
Q 048113 263 VMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEI--DAEG----DTVAGTTLRLVE 330 (339)
Q Consensus 263 ~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~----~~~~~~a~~~l~ 330 (339)
++..|.+.+.+.++.++.+|+.+|..+.+++...-+........+..++... ...| ..++.++..+++
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 5777888888899999999999999998876543344434455555554421 1233 344555555544
No 297
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.72 E-value=12 Score=34.03 Aligned_cols=62 Identities=13% Similarity=0.065 Sum_probs=50.9
Q ss_pred HHHHHHHhccCCcchhhHHhhcCChHHHHHh--hcCCChhHHHHHHHHHHHHhcCc-cchHHHHh
Q 048113 59 ALLSLLSLACGSERNKIRIVKSGIVPVLLEV--LQCQSTTLIELTVAAMLILSSCL-ENKLEIAS 120 (339)
Q Consensus 59 A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~l--L~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~ 120 (339)
-.+.+++||+.+++++..+.+.||++.++.- ++..+|-+++....++.+|..+. +++..|.+
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 4568899999899999999999999999874 44557889999999999999755 56666653
No 298
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=56.19 E-value=2.1e+02 Score=28.22 Aligned_cols=206 Identities=16% Similarity=0.085 Sum_probs=103.2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHH---HHHH-HHHHHHhcCC---hHHHHHHhccCC--HHHHHHHHHHHHHhccCCcchhh
Q 048113 5 LMDNLLNGERETQIQAANELGK---LSRR-QKHKLVERGI---IAPLISMLCSQD--YEAIEAALLSLLSLACGSERNKI 75 (339)
Q Consensus 5 Lv~~L~s~~~~~~~~a~~~L~~---l~~~-~~~~i~~~g~---i~~Lv~lL~~~~--~~~~~~A~~~L~~Ls~~~~~~~~ 75 (339)
|+.+|+.-+.+........+.. ..+. ..+.+...|. +..+.+.+.++. ......++..+..... .|. .
T Consensus 316 lv~~lR~~~~e~l~~l~~~~~~~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~-~Pt-~- 392 (574)
T smart00638 316 LVRLLRTLSEEQLEQLWRQLYEKKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTAR-YPT-E- 392 (574)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhh-cCC-H-
Confidence 4555555555555555554443 1122 5555555554 444445555542 2222333333333332 121 1
Q ss_pred HHhhcCChHHHHHhhcCC----ChhHHHHHHHHHHHHhc----CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCH
Q 048113 76 RIVKSGIVPVLLEVLQCQ----STTLIELTVAAMLILSS----CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISV 147 (339)
Q Consensus 76 ~i~~~g~i~~Lv~lL~~~----~~~~~~~a~~~L~nLs~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~ 147 (339)
..+..+..++.++ .+.++..|+-++.++.. +.+.+........++.+...|.... ...+.
T Consensus 393 -----~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~~~~ 460 (574)
T smart00638 393 -----EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAV-------SKGDE 460 (574)
T ss_pred -----HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHH-------hcCCc
Confidence 2345566777654 34566666666666542 2221111122345667766664410 00455
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhh-ccccCchHHHHHHHHHHHhhcC-CHhhhHHHHhhCCcHHHHH
Q 048113 148 QAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIH-SSEKSSGLTEKAIALLENIVSS-SEDALQEIAATCGAIRALV 225 (339)
Q Consensus 148 ~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~~~a~~~L~n~l~~-~~~~~~~i~~~~g~i~~Lv 225 (339)
+.+...+.+|.|+.... .++.+...+. +...+..++..|+.+|. .++. ++ ..+-+.|.
T Consensus 461 ~~~~~~LkaLGN~g~~~----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr-~~a~~~p---------~~v~~~l~ 520 (574)
T smart00638 461 EEIQLYLKALGNAGHPS----------SIKVLEPYLEGAEPLSTFIRLAAILALR-NLAKRDP---------RKVQEVLL 520 (574)
T ss_pred hheeeHHHhhhccCChh----------HHHHHHHhcCCCCCCCHHHHHHHHHHHH-HHHHhCc---------hHHHHHHH
Confidence 56677888888874422 2445555554 32234568888999998 4432 22 12345666
Q ss_pred HHhhcC--ChHHHHHHHHHHHH
Q 048113 226 ETIEEG--SPQCKEHAVAILLL 245 (339)
Q Consensus 226 ~lL~~~--~~~~~~~a~~~L~~ 245 (339)
.++.+. +++++-.|..+|..
T Consensus 521 ~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 521 PIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred HHHcCCCCChHHHHHHHHHHHh
Confidence 766654 45666655555443
No 299
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=55.51 E-value=2e+02 Score=27.68 Aligned_cols=129 Identities=19% Similarity=0.175 Sum_probs=66.2
Q ss_pred HHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC------ChHHHHHHHHHHHHhhccC
Q 048113 177 YCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEG------SPQCKEHAVAILLLICKSC 250 (339)
Q Consensus 177 ~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~------~~~~~~~a~~~L~~l~~~~ 250 (339)
+.++..|.+.....+....+..++. +++....+. -++..|.++|.++ +..+-.-|+..+..+....
T Consensus 216 ~~~i~vLCsi~~~~~l~~~~w~~m~-nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~ 287 (464)
T PF11864_consen 216 SPCIEVLCSIVNSVSLCKPSWRTMR-NLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGS 287 (464)
T ss_pred HHHHHHHhhHhcccccchhHHHHHH-HHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcc
Confidence 3444555433223455666777777 454443222 3466778888422 2334455666666665443
Q ss_pred chhHHHHHHhcC--ChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHH
Q 048113 251 RDKYRSSILKEG--VMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEI 314 (339)
Q Consensus 251 ~~~~~~~~~~~g--~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 314 (339)
+.+....+--.- ++|.|..-++..++.+-.....++..+-. +.+...-.....+.+-.++..+
T Consensus 288 ~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~-~~~~~~l~~~~W~~~~~i~~~~ 352 (464)
T PF11864_consen 288 GEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLD-GKYGRELSEEDWDIILDIIEEI 352 (464)
T ss_pred ccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh-HhhhhhhcccCchHHHHHHHHH
Confidence 222222221222 77788888887777776666666655543 2332222233445555555443
No 300
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=55.47 E-value=27 Score=29.40 Aligned_cols=100 Identities=15% Similarity=0.138 Sum_probs=48.4
Q ss_pred HHHHHHhcCChHHHHHHhccC---C---------------HHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcC
Q 048113 31 QKHKLVERGIIAPLISMLCSQ---D---------------YEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQC 92 (339)
Q Consensus 31 ~~~~i~~~g~i~~Lv~lL~~~---~---------------~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~ 92 (339)
.++.+.+.|++..++.+|+.+ . .++...+.+.|..++.++++|+..+.+. ++.++..+..
T Consensus 35 rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~ 112 (207)
T PF01365_consen 35 RQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQ 112 (207)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHC
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHH
Confidence 666777899999999888752 1 3567889999999999999999988875 2322333322
Q ss_pred CChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcC
Q 048113 93 QSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNG 133 (339)
Q Consensus 93 ~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~ 133 (339)
.....-..+..++..+-.+. +-...+.+. .|..++.++..
T Consensus 113 ~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll~~ 153 (207)
T PF01365_consen 113 LQIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELLRK 153 (207)
T ss_dssp CCH-TTHHHHHHHHHHHTT-----------------------
T ss_pred hhccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHHHH
Confidence 21111223455565555433 334444444 38888998877
No 301
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.18 E-value=41 Score=32.26 Aligned_cols=69 Identities=13% Similarity=0.259 Sum_probs=55.0
Q ss_pred cHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcC--CHHHHHHHHHHHHH
Q 048113 220 AIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDG--TWRAKNMARDLLLL 288 (339)
Q Consensus 220 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~A~~~L~~ 288 (339)
++..|-+-+.+.++.++..|+..|--+..+++..+...+.+.+++.-++.+.+.. +..+|+++..+|..
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 4556666666777899999999887777777777777888999999999997754 67789999988843
No 302
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=53.60 E-value=2.2e+02 Score=27.86 Aligned_cols=140 Identities=12% Similarity=0.140 Sum_probs=82.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhcc--------CCHHHHHHHHHHHHHhccCCcchhhH
Q 048113 5 LMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCS--------QDYEAIEAALLSLLSLACGSERNKIR 76 (339)
Q Consensus 5 Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~--------~~~~~~~~A~~~L~~Ls~~~~~~~~~ 76 (339)
+.+.+.++++..+.+|+..|..=+. - +-.+|.++.++.. .+-....+..+..+.|.. |+.-...
T Consensus 212 It~a~~g~~~~~r~eAL~sL~TDsG--L-----~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~-Np~i~le 283 (576)
T KOG2549|consen 212 ITEACTGSDEPLRQEALQSLETDSG--L-----QQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD-NPNIFLE 283 (576)
T ss_pred HHHHHhcCCHHHHHHHHHhhccCcc--H-----HHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc-CCccchh
Confidence 3444556777777777777643211 0 1123444444443 245677788889999998 6766555
Q ss_pred HhhcCChHHHHHhhcCCC----------hhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCC
Q 048113 77 IVKSGIVPVLLEVLQCQS----------TTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRIS 146 (339)
Q Consensus 77 i~~~g~i~~Lv~lL~~~~----------~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~ 146 (339)
-.-+-.+|.++.++-+.. -.+|..|+..+..++.+-.....=.....+..+.+.+.+.. ..
T Consensus 284 pYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~---------~~ 354 (576)
T KOG2549|consen 284 PYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNK---------KP 354 (576)
T ss_pred hHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCC---------CC
Confidence 555567888888774421 34888888888877643332221134556777777776531 34
Q ss_pred HHHHHHHHHHHHhhc
Q 048113 147 VQAKIDAIATLHNLS 161 (339)
Q Consensus 147 ~~~~~~a~~~L~nLs 161 (339)
.....-++..|..|.
T Consensus 355 ~st~YGai~gL~~lg 369 (576)
T KOG2549|consen 355 LSTHYGAIAGLSELG 369 (576)
T ss_pred chhhhhHHHHHHHhh
Confidence 444444555555553
No 303
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=53.55 E-value=53 Score=24.79 Aligned_cols=38 Identities=11% Similarity=-0.005 Sum_probs=30.3
Q ss_pred ChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHH
Q 048113 82 IVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA 119 (339)
Q Consensus 82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~ 119 (339)
+|+.|+..|..+++++...|..+|...+..+.+.+.++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v 46 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLV 46 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHH
Confidence 57888999988888999999999988887665554444
No 304
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=52.88 E-value=1.8e+02 Score=26.30 Aligned_cols=132 Identities=15% Similarity=0.221 Sum_probs=88.0
Q ss_pred hhHHhhcCChHHHHHhhcC-------CC--------------h--hHHHHHHHHHHHHhcCccchHHH------------
Q 048113 74 KIRIVKSGIVPVLLEVLQC-------QS--------------T--TLIELTVAAMLILSSCLENKLEI------------ 118 (339)
Q Consensus 74 ~~~i~~~g~i~~Lv~lL~~-------~~--------------~--~~~~~a~~~L~nLs~~~~~~~~i------------ 118 (339)
+..+.+.|.||.|-.++++ ++ | .++..=++.+.+++..+.++..+
T Consensus 2 q~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF12463_consen 2 QTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESE 81 (303)
T ss_pred hHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccc
Confidence 4567888999999888743 11 1 26777788899988755433211
Q ss_pred ----------HhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCC---hHHHHhcCcHHHHHHHhhc
Q 048113 119 ----------ASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQL---ISPIVSSGVTYCLLQLIHS 185 (339)
Q Consensus 119 ----------~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~---~~~i~~~g~i~~Lv~ll~~ 185 (339)
.+.|.+..+++.+.... .+...+-.-+.++-..-+.... +..+.+.|.++.++..+-+
T Consensus 82 ~~~~~~~~~~~~~gLl~kIi~~l~~e~---------~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~ 152 (303)
T PF12463_consen 82 LNSNKLAECKEKKGLLSKIIHVLKKEP---------IDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILS 152 (303)
T ss_pred ccccccccccccccHHHHHHHHHHhCC---------CchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhc
Confidence 13577888888776643 5666777777777777664433 4456778999999988765
Q ss_pred c-ccCchHHHHHHHHHHHhhcCCHhhhHHH
Q 048113 186 S-EKSSGLTEKAIALLENIVSSSEDALQEI 214 (339)
Q Consensus 186 ~-~~~~~~~~~a~~~L~n~l~~~~~~~~~i 214 (339)
+ ..+..+...+...|+.++..+...-..+
T Consensus 153 ~~~~~~~v~Q~~FDLLGELiK~n~~~f~~l 182 (303)
T PF12463_consen 153 DGCMSQEVLQSNFDLLGELIKFNRDAFQRL 182 (303)
T ss_pred CccchHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3 2234678888899995555555544443
No 305
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=52.81 E-value=1.1e+02 Score=28.47 Aligned_cols=73 Identities=15% Similarity=0.272 Sum_probs=61.3
Q ss_pred CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhh-cCCHHHHHHHHHHHHHHhc
Q 048113 219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSV-DGTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~A~~~L~~l~~ 291 (339)
+++..+.+-|.+.++-+...|+..+..++.+++..+|..+....+...|..++. +.-+.++++-..++...++
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 467778888888899999999999988888877778888888899999999988 5667888887778888776
No 306
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=52.24 E-value=2e+02 Score=29.44 Aligned_cols=99 Identities=14% Similarity=0.070 Sum_probs=57.0
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113 83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST 162 (339)
Q Consensus 83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~ 162 (339)
|..|..+...+=++++..++.++++|..+.+..+. ..+..+|.-|.. ....+-..|...|.+|..
T Consensus 306 ievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~----~LL~~lVNKlGD-----------pqnKiaskAsylL~~L~~ 370 (988)
T KOG2038|consen 306 IEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN----NLLVLLVNKLGD-----------PQNKIASKASYLLEGLLA 370 (988)
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH----HHHHHHHHhcCC-----------cchhhhhhHHHHHHHHHh
Confidence 34444443444467888999999998876665442 245566666655 455666677788888855
Q ss_pred -CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHH
Q 048113 163 -CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLE 201 (339)
Q Consensus 163 -~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~ 201 (339)
+|..+..++ ..+.+++-.++.+....-.|+..|.
T Consensus 371 ~HPnMK~Vvi-----~EIer~~FRpn~~~ra~Yyav~fLn 405 (988)
T KOG2038|consen 371 KHPNMKIVVI-----DEIERLAFRPNVSERAHYYAVIFLN 405 (988)
T ss_pred hCCcceeehH-----HHHHHHHcccCccccceeehhhhhh
Confidence 566555543 3455555544323333334444333
No 307
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=52.11 E-value=1.1e+02 Score=23.57 Aligned_cols=96 Identities=21% Similarity=0.221 Sum_probs=59.5
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHH-----------HH-----HHHHh--cCChHHHHHHhccCC----HHHHHHHHHH
Q 048113 5 LMDNLLNGERETQIQAANELGKLSRR-----------QK-----HKLVE--RGIIAPLISMLCSQD----YEAIEAALLS 62 (339)
Q Consensus 5 Lv~~L~s~~~~~~~~a~~~L~~l~~~-----------~~-----~~i~~--~g~i~~Lv~lL~~~~----~~~~~~A~~~ 62 (339)
++..+.+ ++......+..|+.+..+ .| ..+.+ ..++..+.+.+.... .+....++.+
T Consensus 31 l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~ 109 (148)
T PF08389_consen 31 LLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELVKAALKC 109 (148)
T ss_dssp HHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHH
T ss_pred HHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 4445544 566666777777776654 11 11222 223333444444432 7888999999
Q ss_pred HHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHH
Q 048113 63 LLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAM 105 (339)
Q Consensus 63 L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 105 (339)
+..... --.-..+...+.++.+..++.++ .++..|+.+|
T Consensus 110 l~s~i~--~~~~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 110 LKSWIS--WIPIELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHTT--TS-HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHH--hCCHHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 999888 33455666778999999999554 4577777664
No 308
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=51.20 E-value=1.4e+02 Score=24.69 Aligned_cols=64 Identities=27% Similarity=0.329 Sum_probs=45.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHh--cCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 048113 5 LMDNLLNGERETQIQAANELGKLSRR-QKHKLVE--RGIIAPLISMLCSQDYEAIEAALLSLLSLAC 68 (339)
Q Consensus 5 Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~ 68 (339)
+++=|...+..-+.-|...+..+... ....+.- .-.|.++-.-|.+.++++...++.+|..|..
T Consensus 43 f~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 43 FFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred HHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 34444555556667777777777665 4444433 5677777788889999999999999999965
No 309
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=50.35 E-value=1.4e+02 Score=24.55 Aligned_cols=126 Identities=15% Similarity=0.063 Sum_probs=76.7
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccc--hHHH
Q 048113 41 IAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN--KLEI 118 (339)
Q Consensus 41 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~--~~~i 118 (339)
++.++++.-+.+..++..|+..+...-..---|. ...+|.|+.+..++++.++..|...+..+....+. ...+
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~ 84 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRY 84 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4566777778899999999998877666311111 12589999999999999999999999888753332 1111
Q ss_pred HhcchHHHHHHHhcCCCCCCCCccCCCCHHH---HHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhc
Q 048113 119 ASSGAIQRLVEILNGDLADDDNSYGRISVQA---KIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHS 185 (339)
Q Consensus 119 ~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~---~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~ 185 (339)
..|+..-.++-+.-..+ ..... ...-+.-|+.+.. +...|..+ +..|++.+..
T Consensus 85 --~~gi~~af~~~~~l~~~-------~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~ 141 (187)
T PF12830_consen 85 --SEGIRLAFDYQRRLSSD-------SRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDF 141 (187)
T ss_pred --HHHHHHHHHHHHHhcCC-------ccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHh
Confidence 22455444433321000 11111 4455566666655 44556655 5566777655
No 310
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=49.69 E-value=75 Score=28.99 Aligned_cols=67 Identities=13% Similarity=0.221 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhcCccchHHHHhc--chHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHh
Q 048113 98 IELTVAAMLILSSCLENKLEIASS--GAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVS 172 (339)
Q Consensus 98 ~~~a~~~L~nLs~~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 172 (339)
|..|...+............+... +.+..|+++++.+.. -...++..|+.+|..++....-...++.
T Consensus 239 RllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~--------v~~~i~~~Al~~L~ai~~~~~~~~~V~~ 307 (329)
T PF06012_consen 239 RLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEK--------VPMDIQTAALRALEAISHKRPRCSDVLR 307 (329)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCC--------CCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 333434443333334445555544 499999999987421 4677899999999999886554444433
No 311
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=49.68 E-value=93 Score=28.37 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhccCCcchhhHHhhcC--ChHHHHHhhcCC---ChhHHHHHHHHHHHHhcCccchHHHH-------hc
Q 048113 54 EAIEAALLSLLSLACGSERNKIRIVKSG--IVPVLLEVLQCQ---STTLIELTVAAMLILSSCLENKLEIA-------SS 121 (339)
Q Consensus 54 ~~~~~A~~~L~~Ls~~~~~~~~~i~~~g--~i~~Lv~lL~~~---~~~~~~~a~~~L~nLs~~~~~~~~i~-------~~ 121 (339)
.+|-.|+..+..... ++.....+...+ .+.-|++++..+ +..++..|+.+|.-++........|. ..
T Consensus 237 ~iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~H 315 (329)
T PF06012_consen 237 QIRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSH 315 (329)
T ss_pred HHHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCc
Confidence 344556556655555 677788888887 899999999875 35789999999999998665433333 35
Q ss_pred chHHHHHHH
Q 048113 122 GAIQRLVEI 130 (339)
Q Consensus 122 g~i~~Lv~l 130 (339)
|.+..+++-
T Consensus 316 GiL~~llR~ 324 (329)
T PF06012_consen 316 GILPQLLRK 324 (329)
T ss_pred ccHHHHHHH
Confidence 666666653
No 312
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=47.47 E-value=4.9e+02 Score=29.91 Aligned_cols=133 Identities=11% Similarity=0.110 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHh-c---cCCHHHHHHHHHHHHHhccCCcchhhHH----hhcCChHHH
Q 048113 17 QIQAANELGKLSRR--QKHKLVERGIIAPLISML-C---SQDYEAIEAALLSLLSLACGSERNKIRI----VKSGIVPVL 86 (339)
Q Consensus 17 ~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL-~---~~~~~~~~~A~~~L~~Ls~~~~~~~~~i----~~~g~i~~L 86 (339)
|.-.+.-|..++.. .|-.+....++..+...+ . +.+..+...|+..|+.+|...-+ +..+ .+...+.++
T Consensus 1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle-~eEL~~f~FQkefLkPf 1187 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLE-REELANYNFQNEFMKPF 1187 (1780)
T ss_pred chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcc-hhhhhchhHHHHHHHHH
Confidence 34444445555544 555555566666666533 2 23567888899988888873222 2221 234567778
Q ss_pred HHhhcC-CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhc
Q 048113 87 LEVLQC-QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS 161 (339)
Q Consensus 87 v~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs 161 (339)
..++.+ .+.++++..+.++.++..... ..| .+ |=+.+..++...-. ..++.+...|..++..+.
T Consensus 1188 e~im~~s~~~eVrE~ILeCv~qmI~s~~--~nI-kS-GWktIF~VLs~aa~-------d~~e~iV~lAFetl~~I~ 1252 (1780)
T PLN03076 1188 VIVMRKSNAVEIRELIIRCVSQMVLSRV--NNV-KS-GWKSMFMVFTTAAY-------DDHKNIVLLAFEIIEKII 1252 (1780)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHH--hhh-hc-CcHHHHHHHHHHHh-------CccHHHHHHHHHHHHHHH
Confidence 776664 467899999999988865322 112 22 34444444432100 046667777777766554
No 313
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=47.13 E-value=36 Score=30.46 Aligned_cols=57 Identities=33% Similarity=0.390 Sum_probs=44.3
Q ss_pred HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCc--------------chhhHHhhcCChHHHHHhhcC
Q 048113 36 VERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSE--------------RNKIRIVKSGIVPVLLEVLQC 92 (339)
Q Consensus 36 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~--------------~~~~~i~~~g~i~~Lv~lL~~ 92 (339)
.+...+..+++-|.+.+...+..|+++|..++.|.- .|...+.+.|+++.|+.+|..
T Consensus 57 ~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 57 QRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred hHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 346678889999999999999999999999998632 345556777888888777643
No 314
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=45.86 E-value=84 Score=20.56 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=35.0
Q ss_pred HHHhhccCchhHHHHHHhcCChHHHHHh-hhcCCHHHHHHHHHHHHHHhcc
Q 048113 243 LLLICKSCRDKYRSSILKEGVMPGLLQL-SVDGTWRAKNMARDLLLLLRDC 292 (339)
Q Consensus 243 L~~l~~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~~~~~A~~~L~~l~~~ 292 (339)
|..||.. ..+|+.+.+.|+-|.|-.+ ....++.+++..-.+...|-..
T Consensus 2 LllL~~T--~~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLird 50 (58)
T PF04064_consen 2 LLLLCAT--REGREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRD 50 (58)
T ss_pred HhHHhcc--HHHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 4556655 4589999999999988887 4456788877777777776544
No 315
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.66 E-value=2.7e+02 Score=28.95 Aligned_cols=208 Identities=15% Similarity=0.113 Sum_probs=96.3
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHH
Q 048113 7 DNLLNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPV 85 (339)
Q Consensus 7 ~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~ 85 (339)
+....|+-..|...+++...--++ +. .+.....+......-.++||.-+...++.++.++.- +-+...++.
T Consensus 70 DaF~~Gn~llRf~V~rv~~q~g~hln~-v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~l-------ipEfn~~hh 141 (970)
T KOG1988|consen 70 DAFPVGNNLLRFAVLRVDQQSGKHLNK-VLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSAL-------IPEFNQVHH 141 (970)
T ss_pred HHhccCcHHHHHHHHHHHhhccccchh-hhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhh-------cccccchhH
Confidence 334445555555555444422222 11 111222333333344466888888888888877762 223455666
Q ss_pred HHHh-hcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCC
Q 048113 86 LLEV-LQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCH 164 (339)
Q Consensus 86 Lv~l-L~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~ 164 (339)
+++. ++++++--.+.|..+..+.+..... ..+.-.|-+..+++.++- .++.+..++.++..+..+.
T Consensus 142 lIr~sl~S~helE~eaa~~Aaa~Faa~sk~-FA~si~gkis~mIef~d~------------~~~mkL~li~Vfs~M~c~a 208 (970)
T KOG1988|consen 142 LIRISLDSHHELEVEAAEFAAACFAAQSKD-FACSICGKISDMIEFLDL------------PVPMKLSLIPVFSHMHCHA 208 (970)
T ss_pred HHHHHhcCccchhhHHHHHHHhhhhhhhhh-hHHHHHHHHHHHhhcccC------------CCCcchhHhHHHHHhcchh
Confidence 7664 4454444455565666555532211 111112334444444433 4556667777777775544
Q ss_pred CChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC-ChHHHHHHHHHH
Q 048113 165 QLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEG-SPQCKEHAVAIL 243 (339)
Q Consensus 165 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L 243 (339)
..... +.....+++.+++ ..+....-+..+. +++. + ......+-+..|.+.++.+ ..-++..+.+.+
T Consensus 209 t~A~r-----a~~l~m~lv~~tp-s~d~~v~fL~stT-~Las--r---s~~ai~eq~d~l~q~~ked~~kivr~~vl~kl 276 (970)
T KOG1988|consen 209 TGASR-----AFGLCMSLVSGTP-SIDRVVAFLYSTT-NLAS--R---SLVAISEQSDVLLQFLKEDERKIVRLKVLRKL 276 (970)
T ss_pred hhhHH-----HHHHHHHHhcCCC-cccceeeehhhhH-HHHH--H---HHHHhHHHHHHHHHhhcCCchhHHHHHHHHHH
Confidence 33222 2334455555442 2333333333333 2211 1 1111134456666666643 233344444444
Q ss_pred HHhh
Q 048113 244 LLIC 247 (339)
Q Consensus 244 ~~l~ 247 (339)
.+++
T Consensus 277 ~~La 280 (970)
T KOG1988|consen 277 DFLA 280 (970)
T ss_pred HHHh
Confidence 4443
No 316
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=44.12 E-value=2.5e+02 Score=25.50 Aligned_cols=187 Identities=14% Similarity=0.072 Sum_probs=127.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHh-----cCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCcchh
Q 048113 4 MLMDNLLNGERETQIQAANELGKLSRR---QKHKLVE-----RGIIAPLISMLCSQ-DYEAIEAALLSLLSLACGSERNK 74 (339)
Q Consensus 4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~-----~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~ 74 (339)
.|+..|...+.+.+..++....++-+. .|...++ ...+..|+.- .. .+++....-..+..+.+ .+...
T Consensus 83 ~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~mlrEcir-he~La 159 (342)
T KOG1566|consen 83 LLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNMLRECIR-HEFLA 159 (342)
T ss_pred HHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHHHHHHh-hHHHH
Confidence 467777788888888888888887764 3322222 3344444433 12 36666666667778777 46677
Q ss_pred hHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc-c-hHHHHh-cc--hHHHHHHHhcCCCCCCCCccCCCCHHH
Q 048113 75 IRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE-N-KLEIAS-SG--AIQRLVEILNGDLADDDNSYGRISVQA 149 (339)
Q Consensus 75 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~-~-~~~i~~-~g--~i~~Lv~ll~~~~~~~~~~~~~~~~~~ 149 (339)
+.|....-........+.++-++...|..+...+..... . .+.+.. .+ ..+.--.++.+ ++.-.
T Consensus 160 kiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s-----------~Nyvt 228 (342)
T KOG1566|consen 160 KIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRS-----------ENYVT 228 (342)
T ss_pred HHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcc-----------cceeh
Confidence 777788888888888888888888888888877764332 1 222221 11 24446667777 78889
Q ss_pred HHHHHHHHHhhcCCCCChHHH----HhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCC
Q 048113 150 KIDAIATLHNLSTCHQLISPI----VSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSS 207 (339)
Q Consensus 150 ~~~a~~~L~nLs~~~~~~~~i----~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~ 207 (339)
+..+..+|..+-.+..|-..+ .+...+..+..+|+++ +..++-.|..+.. ....+
T Consensus 229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk--skniQ~eAFhvFK-vfvAn 287 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK--SKNIQLEAFHVFK-VFVAN 287 (342)
T ss_pred HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc--cccchHHHHHHHH-HHhcC
Confidence 999999999998777665444 3346788899999985 5788888888877 55444
No 317
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=43.78 E-value=75 Score=25.58 Aligned_cols=84 Identities=20% Similarity=0.288 Sum_probs=56.8
Q ss_pred HHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHH-hcc-hHHHHHH-HhcCCCCCCCCccCCCCHHHHHH
Q 048113 76 RIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA-SSG-AIQRLVE-ILNGDLADDDNSYGRISVQAKID 152 (339)
Q Consensus 76 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g-~i~~Lv~-ll~~~~~~~~~~~~~~~~~~~~~ 152 (339)
.+++....+.|++.+.++++.+-..+++++..+...- +..+. +.+ .++.++. ++.+++ .....+..
T Consensus 68 ~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~--~~~Lk~ele~~l~~i~~~il~~~~---------~~~~~k~~ 136 (168)
T PF12783_consen 68 NLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRF--RSHLKLELEVFLSHIILRILESDN---------SSLWQKEL 136 (168)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHccCC---------CcHHHHHH
Confidence 4556677888888888777888889999999988422 22221 222 4555555 666531 23567888
Q ss_pred HHHHHHhhcCCCCChHHH
Q 048113 153 AIATLHNLSTCHQLISPI 170 (339)
Q Consensus 153 a~~~L~nLs~~~~~~~~i 170 (339)
++.++..++.++.....+
T Consensus 137 ~Le~l~~l~~~p~~l~~l 154 (168)
T PF12783_consen 137 ALEILRELCKDPQFLVDL 154 (168)
T ss_pred HHHHHHHHHhChhHHHHH
Confidence 999999999888654433
No 318
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=41.38 E-value=2.1e+02 Score=27.43 Aligned_cols=75 Identities=24% Similarity=0.231 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhh
Q 048113 15 ETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVL 90 (339)
Q Consensus 15 ~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL 90 (339)
..|..|+++|+.++.. ....+.+. .|+.+|++.+.--|..|+.++...+.........-.-....+.|..+|
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~----~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQP----LLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHH----HHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 4678899999998875 21111111 578899998888888888888888874222111110123345666777
Q ss_pred cCC
Q 048113 91 QCQ 93 (339)
Q Consensus 91 ~~~ 93 (339)
..+
T Consensus 178 ~~~ 180 (441)
T PF12054_consen 178 ENP 180 (441)
T ss_pred cCC
Confidence 743
No 319
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=41.04 E-value=4e+02 Score=27.07 Aligned_cols=135 Identities=17% Similarity=0.156 Sum_probs=83.8
Q ss_pred CChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhh
Q 048113 81 GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNL 160 (339)
Q Consensus 81 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nL 160 (339)
.-|.-|+.+|.+.+-...+.+-..+..+...+.... .+..||+..-+. ++. .++.+|..+
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~------l~~~l~~y~~~t----------~s~----~~~~il~~~ 63 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREPW------LVNGLVDYYLST----------NSQ----RALEILVGV 63 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHH------HHHHHHHHHhhc----------CcH----HHHHHHHhc
Confidence 346678888888887777777776655544332222 466677654331 232 234444432
Q ss_pred cCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc-CChHHHHHH
Q 048113 161 STCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE-GSPQCKEHA 239 (339)
Q Consensus 161 s~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a 239 (339)
..+..+ . .+..|-+.+.. ..-+..++..|+..+...+.....|.+ ...++.|++.|+. .+..+...|
T Consensus 64 -~~P~~K-~-----~~~~l~~~~~~----~~~Rl~~L~Ll~~~v~~qp~~l~~i~~-t~Lf~~LLk~L~~D~~~~~~~~a 131 (668)
T PF04388_consen 64 -QEPHDK-H-----LFDKLNDYFVK----PSYRLQALTLLGHFVRSQPPWLYKILQ-TPLFKSLLKCLQFDTSITVVSSA 131 (668)
T ss_pred -CCccHH-H-----HHHHHHHHHcC----chhHHHHHHHHHHHHhcCCchHHHHhc-ChhHHHHHHHHhhcccHHHHHHH
Confidence 222212 1 23334444443 466888999999666677888888887 7899999998875 456667777
Q ss_pred HHHHHHhh
Q 048113 240 VAILLLIC 247 (339)
Q Consensus 240 ~~~L~~l~ 247 (339)
+.+|.-|-
T Consensus 132 l~~LimlL 139 (668)
T PF04388_consen 132 LLVLIMLL 139 (668)
T ss_pred HHHHHHHh
Confidence 77776654
No 320
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=40.93 E-value=2.8e+02 Score=25.16 Aligned_cols=143 Identities=17% Similarity=0.168 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHHHHhccCCcchhhHHhhc-----------CChHHHHHhhc------CCChhHHHHHHHHHHHHhcCc-c
Q 048113 52 DYEAIEAALLSLLSLACGSERNKIRIVKS-----------GIVPVLLEVLQ------CQSTTLIELTVAAMLILSSCL-E 113 (339)
Q Consensus 52 ~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~-----------g~i~~Lv~lL~------~~~~~~~~~a~~~L~nLs~~~-~ 113 (339)
.-++|..|+.++.....+|++.+..+++. +....|+..|- +.++.-...|+.+|..+-.++ .
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 45889999999999999889998887643 11223555444 334555678888888887644 4
Q ss_pred chHHHHh------------cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhh-cCCCCChHHHHhc-CcHHHH
Q 048113 114 NKLEIAS------------SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNL-STCHQLISPIVSS-GVTYCL 179 (339)
Q Consensus 114 ~~~~i~~------------~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nL-s~~~~~~~~i~~~-g~i~~L 179 (339)
+|+...+ ...++.+..+|..... .+.++.++..-+..|.-- ..++.....+.+. +.++.|
T Consensus 131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~------~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~L 204 (312)
T PF04869_consen 131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLR------RNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSL 204 (312)
T ss_dssp HHHHHTT--EE--STTS--EEHHHHHHHHTTT----------T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHH
T ss_pred HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhh------cCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHH
Confidence 5665442 1246666666654110 013444444444444433 3355666667666 689999
Q ss_pred HHHhhccccCchHHHHHH--HHHH
Q 048113 180 LQLIHSSEKSSGLTEKAI--ALLE 201 (339)
Q Consensus 180 v~ll~~~~~~~~~~~~a~--~~L~ 201 (339)
+......+ +.+...+++ ..|+
T Consensus 205 i~~~~~~~-~~~~~VqGL~A~LLG 227 (312)
T PF04869_consen 205 IEFSNQSS-SEDVLVQGLCAFLLG 227 (312)
T ss_dssp HHHHS--T-CCCHHHHHHHHHHHH
T ss_pred HHHhhcCC-CCcchHHHHHHHHHH
Confidence 99864443 344444433 4444
No 321
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.84 E-value=1.2e+02 Score=30.66 Aligned_cols=141 Identities=12% Similarity=0.078 Sum_probs=80.6
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHH--H------HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcch
Q 048113 2 EEMLMDNLLNGERETQIQAANELGKLSR--R------QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERN 73 (339)
Q Consensus 2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~--~------~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~ 73 (339)
++.|..-|+-.|.++|..|+..+-++-- + ..+.+.+ .-...|..+|+++-|.+|..|..-++.... ..
T Consensus 176 ~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s---~f 251 (1005)
T KOG1949|consen 176 KPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITS---KF 251 (1005)
T ss_pred hHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHH---HH
Confidence 3455666778899999999999887642 1 1222222 224567789999999999998877666554 34
Q ss_pred hhHHhhcCChHHHHHhhc---C-CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHH
Q 048113 74 KIRIVKSGIVPVLLEVLQ---C-QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQA 149 (339)
Q Consensus 74 ~~~i~~~g~i~~Lv~lL~---~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~ 149 (339)
++.|-..-.+..|-.+.+ . ...++|......|-.+..++.+...+ .-++|.+-..++. .+..+
T Consensus 252 We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~l--e~~Lpal~~~l~D-----------~se~V 318 (1005)
T KOG1949|consen 252 WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLL--EQLLPALRYSLHD-----------NSEKV 318 (1005)
T ss_pred HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHH--HHHHHhcchhhhc-----------cchhH
Confidence 444433333333333332 1 22356666666666666555544422 1234444445555 45666
Q ss_pred HHHHHHHHHh
Q 048113 150 KIDAIATLHN 159 (339)
Q Consensus 150 ~~~a~~~L~n 159 (339)
|.++...|..
T Consensus 319 RvA~vd~ll~ 328 (1005)
T KOG1949|consen 319 RVAFVDMLLK 328 (1005)
T ss_pred HHHHHHHHHH
Confidence 6655555443
No 322
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.54 E-value=34 Score=31.33 Aligned_cols=61 Identities=16% Similarity=-0.002 Sum_probs=50.3
Q ss_pred HHHHHHHHHHH---HHHHHHhcCChHHHHHHh--ccCCHHHHHHHHHHHHHhccCCcchhhHHhhc
Q 048113 20 AANELGKLSRR---QKHKLVERGIIAPLISML--CSQDYEAIEAALLSLLSLACGSERNKIRIVKS 80 (339)
Q Consensus 20 a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL--~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~ 80 (339)
..+.+++++-. .++.+.+.|+++.++.-. ++.+|-+++.+.-++++|..+|.+|+..+.+-
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km 441 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM 441 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence 45577777765 899999999999888754 45589999999999999999999998877654
No 323
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=40.33 E-value=1.6e+02 Score=24.57 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=42.1
Q ss_pred HHhcCcHHHHHHHhhccccC----------------chHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCCh
Q 048113 170 IVSSGVTYCLLQLIHSSEKS----------------SGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSP 233 (339)
Q Consensus 170 i~~~g~i~~Lv~ll~~~~~~----------------~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~ 233 (339)
+...|++..++.+|+.+-.. .++...|...|+..+..+.+|...+.+. ++-++..+.....
T Consensus 39 lrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~---~~~l~~~~~~~~~ 115 (207)
T PF01365_consen 39 LRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH---LDFLISIFMQLQI 115 (207)
T ss_dssp HHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH---HH-----HHCCCH
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH---HhHHHHHHHHhhc
Confidence 45558888888888664221 2566788899995555566677666653 3433443332111
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhcc
Q 048113 234 QCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDC 292 (339)
Q Consensus 234 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 292 (339)
..--.+..++..+-.+++. ....+.+. .+..++.++...... ..-...|..+...
T Consensus 116 ~~~~~~~d~l~~i~~dN~~-L~~~i~e~-~I~~~i~ll~~~gr~--~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 116 GYGLGALDVLTEIFRDNPE-LCESISEE-HIEKFIELLRKHGRQ--PRYLDFLSSLCVC 170 (207)
T ss_dssp -TTHHHHHHHHHHHTT-------------------------------------------
T ss_pred cCCchHHHHHHHHHHCcHH-HHHHhhHH-HHHHHHHHHHHcCCC--hHHHHHHhhhccc
Confidence 1113455666777666543 45554443 488888888764322 2234455555443
No 324
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=39.84 E-value=41 Score=32.39 Aligned_cols=67 Identities=19% Similarity=0.181 Sum_probs=46.8
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHH-hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhc
Q 048113 84 PVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA-SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS 161 (339)
Q Consensus 84 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs 161 (339)
..+-.+....++++++.|..++.+++.+.++|.... +...-..+++++.. ..+.+-+.+..++..+.
T Consensus 331 ~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~-----------~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 331 KALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVT-----------PEPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcc-----------cccccchhhhHHHHHhh
Confidence 334444556789999999999999998887766444 44566677777777 45666666666665554
No 325
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=39.80 E-value=2.9e+02 Score=25.10 Aligned_cols=156 Identities=17% Similarity=0.201 Sum_probs=102.5
Q ss_pred HHHHHHHhhccccCchHHHHHHHHHHHhhc-CCHhhhHHHHhhCCc-HHHHHHHhhcC----C---------hHHHHHHH
Q 048113 176 TYCLLQLIHSSEKSSGLTEKAIALLENIVS-SSEDALQEIAATCGA-IRALVETIEEG----S---------PQCKEHAV 240 (339)
Q Consensus 176 i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~-~~~~~~~~i~~~~g~-i~~Lv~lL~~~----~---------~~~~~~a~ 240 (339)
++.+-+.|.+. ...+...|+..|.+.+. ..+.....+...-+. .+.+.+++... . +.++...+
T Consensus 58 ~k~lyr~L~~~--~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI 135 (330)
T PF11707_consen 58 LKLLYRSLSSS--KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFI 135 (330)
T ss_pred HHHHHHHhCcC--cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHH
Confidence 56666777664 36778899999995444 344555556543333 45666666431 1 16777777
Q ss_pred HHHHHhhccCchhHHHHHHh-cCChHHHHHhhhcCCHHHHHHHHHHHH-HHhccCCCcch--hhhhhhHHHHHHHHHHHh
Q 048113 241 AILLLICKSCRDKYRSSILK-EGVMPGLLQLSVDGTWRAKNMARDLLL-LLRDCSSFGSR--SKQLKNELVEQIMQEIDA 316 (339)
Q Consensus 241 ~~L~~l~~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~A~~~L~-~l~~~~~~~~~--~~~~~~~~~~~i~~~~~~ 316 (339)
..+..+....++..+..+++ .+.+..+.+-+..+++.+.......|. .+-....+.+. .+.+....++++.....-
T Consensus 136 ~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 136 RFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence 77766666555667777776 667888888888888888888888775 45554443222 235678888888886666
Q ss_pred cCc----ccchHHHHHHHHHH
Q 048113 317 EGD----TVAGTTLRLVEEMI 333 (339)
Q Consensus 317 ~~~----~~~~~a~~~l~~~v 333 (339)
+|+ .+++.|..+|..+-
T Consensus 216 ~~~~~~~~~~~~vh~fL~~lc 236 (330)
T PF11707_consen 216 DGEDEKSSVADLVHEFLLALC 236 (330)
T ss_pred cCCcccchHHHHHHHHHHHHh
Confidence 666 66777777776554
No 326
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=39.45 E-value=3.7e+02 Score=27.34 Aligned_cols=106 Identities=16% Similarity=0.109 Sum_probs=70.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHH---------HHHHHHhcCChHH--------------HHHHhcc--CCHHHHHH
Q 048113 4 MLMDNLLNGERETQIQAANELGKLSRR---------QKHKLVERGIIAP--------------LISMLCS--QDYEAIEA 58 (339)
Q Consensus 4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~---------~~~~i~~~g~i~~--------------Lv~lL~~--~~~~~~~~ 58 (339)
.|+.+|.|.+..+...+-..+...... .-+.+.+.|-.+. +...|+. ..+..|..
T Consensus 8 ~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s~~~~~il~~~~~P~~K~~~~~l~~~~~~~~~Rl~ 87 (668)
T PF04388_consen 8 ELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNSQRALEILVGVQEPHDKHLFDKLNDYFVKPSYRLQ 87 (668)
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCcHHHHHHHHhcCCccHHHHHHHHHHHHcCchhHHH
Confidence 477888888888777776666655432 1122222222222 2222221 14567888
Q ss_pred HHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCC-ChhHHHHHHHHHHHHh
Q 048113 59 ALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQ-STTLIELTVAAMLILS 109 (339)
Q Consensus 59 A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs 109 (339)
++..|+.+....+..-..|.+...++.|+++|..+ +..+...|+.+|..|.
T Consensus 88 ~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 88 ALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred HHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 99999999997788888999999999999999876 5566677777776665
No 327
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=38.98 E-value=4.5e+02 Score=27.04 Aligned_cols=234 Identities=12% Similarity=0.108 Sum_probs=114.9
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhc--CChHHHH
Q 048113 10 LNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKS--GIVPVLL 87 (339)
Q Consensus 10 ~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~--g~i~~Lv 87 (339)
++.---.+..||..+..+..+-++.-+-..+.+...+.+++.+-.++..|+-+|.-+-. +.+.-..+.++ +.++.|+
T Consensus 470 ~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~-~~q~h~k~sahVp~tmekLL 548 (970)
T COG5656 470 RSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIF-NEQSHEKFSAHVPETMEKLL 548 (970)
T ss_pred cCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHh-chhhhHHHHhhhhHHHHHHH
Confidence 45555678889999998866544444445555666777777888888889888888888 34555555443 4444444
Q ss_pred HhhcCCChhHHHHHHHHH-HHHhc-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC---
Q 048113 88 EVLQCQSTTLIELTVAAM-LILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST--- 162 (339)
Q Consensus 88 ~lL~~~~~~~~~~a~~~L-~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~--- 162 (339)
.+-+.-+.+.....+..+ ...+. -.+....++ ...++..+++.++.-+.+ -+..+...+-...|.+.|..+..
T Consensus 549 sLSn~feiD~LS~vMe~fVe~fseELspfa~eLa-~~Lv~qFlkiaq~l~ens-~d~~s~vDDKqmaasGiL~T~~smiL 626 (970)
T COG5656 549 SLSNTFEIDPLSMVMESFVEYFSEELSPFAPELA-GSLVRQFLKIAQSLLENS-SDTSSVVDDKQMAASGILRTIESMIL 626 (970)
T ss_pred HhcccccchHHHHHHHHHHHHhHHhhchhHHHHH-HHHHHHHHHHHHHHHcCC-ccccccccHHHHHHHHHHHHHHHHHH
Confidence 443332333333333222 22221 111111111 223333333333210000 00111122444556666655532
Q ss_pred CCCChHHHHhc--CcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCC-hHHHHHH
Q 048113 163 CHQLISPIVSS--GVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGS-PQCKEHA 239 (339)
Q Consensus 163 ~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~a 239 (339)
+-+++..+.+. -..-+.++++-..+ -.+....|+..+- .++-.......+. -|..+-+.+++.+.. ....+.+
T Consensus 627 Slen~p~vLk~le~slypvi~Filkn~-i~dfy~Ea~dild-g~tf~skeI~pim--wgi~Ell~~~l~~~~t~~y~ee~ 702 (970)
T COG5656 627 SLENRPLVLKYLEVSLYPVISFILKNE-ISDFYQEALDILD-GYTFMSKEIEPIM--WGIFELLLNLLIDEITAVYSEEV 702 (970)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHh-hhhHHHHHhhhhh--hHHHHHHHhcccccchhhhHHHH
Confidence 34554433322 11223333332221 3566667777776 3332222222222 345555555665543 3556777
Q ss_pred HHHHHHhhccC
Q 048113 240 VAILLLICKSC 250 (339)
Q Consensus 240 ~~~L~~l~~~~ 250 (339)
.-++-|+....
T Consensus 703 ~~al~nfityG 713 (970)
T COG5656 703 ADALDNFITYG 713 (970)
T ss_pred HHHHHHHHHhC
Confidence 78888887664
No 328
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=38.43 E-value=6.8e+02 Score=28.90 Aligned_cols=266 Identities=12% Similarity=0.111 Sum_probs=145.5
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHH----HhcCChHHHHHHhc-cCCHHHHHHHHHHHHHhccCCcchhhHH
Q 048113 5 LMDNLLNGERETQIQAANELGKLSRR--QKHKL----VERGIIAPLISMLC-SQDYEAIEAALLSLLSLACGSERNKIRI 77 (339)
Q Consensus 5 Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i----~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~~~~i 77 (339)
++..=.+.+..+...|+..|+.++.. .+..+ .+...+.++..++. +.+.++++..++++.++-.... ..|
T Consensus 1142 f~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~nI 1218 (1780)
T PLN03076 1142 FVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NNV 1218 (1780)
T ss_pred HHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hhh
Confidence 33333355778899999999999876 33322 23456777777554 4578999999999988876311 122
Q ss_pred hhcCChHHHHHhhc----CCChhHHHHHHHHHHHHhcCccc------hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCH
Q 048113 78 VKSGIVPVLLEVLQ----CQSTTLIELTVAAMLILSSCLEN------KLEIASSGAIQRLVEILNGDLADDDNSYGRISV 147 (339)
Q Consensus 78 ~~~g~i~~Lv~lL~----~~~~~~~~~a~~~L~nLs~~~~~------~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~ 147 (339)
+. |.+.+..++. ..++.+...|..++..+..+.-. ...+ ...|..|..+..+. .+.
T Consensus 1219 -kS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~----------~~~ 1284 (1780)
T PLN03076 1219 -KS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSR----------FNK 1284 (1780)
T ss_pred -hc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCc----------Ccc
Confidence 22 6777777665 34577888888887766532110 1111 34566666666552 346
Q ss_pred HHHHHHHHHHHhhcC----CC------------------------CChHHHHh-----cCcHHHHH---HHhhccccCch
Q 048113 148 QAKIDAIATLHNLST----CH------------------------QLISPIVS-----SGVTYCLL---QLIHSSEKSSG 191 (339)
Q Consensus 148 ~~~~~a~~~L~nLs~----~~------------------------~~~~~i~~-----~g~i~~Lv---~ll~~~~~~~~ 191 (339)
++-..|+..|++++. .+ +.-..+.+ ..-+|.|. ++..+ .+.+
T Consensus 1285 nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D--~RlE 1362 (1780)
T PLN03076 1285 DISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFD--PRPE 1362 (1780)
T ss_pred cccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcC--CcHH
Confidence 666677777776521 00 00000000 11222222 22332 3678
Q ss_pred HHHHHHHHHHHhhcCC-----HhhhHHHHhhCCcHHHHHHHhhcC-----------------------ChHHHHHHHHHH
Q 048113 192 LTEKAIALLENIVSSS-----EDALQEIAATCGAIRALVETIEEG-----------------------SPQCKEHAVAIL 243 (339)
Q Consensus 192 ~~~~a~~~L~n~l~~~-----~~~~~~i~~~~g~i~~Lv~lL~~~-----------------------~~~~~~~a~~~L 243 (339)
++..|+.+|-..+..+ ++....+.. +++.++.+-++.. +....+.+..+|
T Consensus 1363 VR~~ALqtLF~iL~~yG~~Fs~~~W~~if~--~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL 1440 (1780)
T PLN03076 1363 IRKSALQVLFDTLRNHGHLFSLPLWERVFE--SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLAL 1440 (1780)
T ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHH--HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHH
Confidence 8999998887555433 233444443 6777877766521 012334555555
Q ss_pred HHhhccCchhHHHHHHh--cCChHHHHHhhhcCCHHHHHHHHHHHHHHhcc
Q 048113 244 LLICKSCRDKYRSSILK--EGVMPGLLQLSVDGTWRAKNMARDLLLLLRDC 292 (339)
Q Consensus 244 ~~l~~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 292 (339)
..++.--.. +=..+.. .+.+..|...+...+..+-.-...+|..|...
T Consensus 1441 ~~lvdLft~-fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ 1490 (1780)
T PLN03076 1441 QLVVDLFVK-FYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSN 1490 (1780)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 555432111 1111111 12333444445556777777777788766543
No 329
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=37.42 E-value=3.9e+02 Score=25.86 Aligned_cols=112 Identities=15% Similarity=0.202 Sum_probs=63.7
Q ss_pred CcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHH---HHhhCCcHHHHHHHhhc-CChHHHHHHHHHHHHhhcc
Q 048113 174 GVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQE---IAATCGAIRALVETIEE-GSPQCKEHAVAILLLICKS 249 (339)
Q Consensus 174 g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~---i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~ 249 (339)
++++.+++.+..+ .+..--+.++. +..++.+.. ...+.+.|+.|+.+|.. .++.++.+|+..|+.+...
T Consensus 21 ~~v~~llkHI~~~----~ImDlLLklIs---~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~i 93 (475)
T PF04499_consen 21 NFVDNLLKHIDTP----AIMDLLLKLIS---TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRI 93 (475)
T ss_pred cHHHHHHHhcCCc----HHHHHHHHHHc---cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 6677777666542 32222223222 111222222 23347999999999974 4578899999888777432
Q ss_pred C------------chhHHHHHHhcCChHHHHHhhhc-CCHHHHHHHHH-HHHHHhcc
Q 048113 250 C------------RDKYRSSILKEGVMPGLLQLSVD-GTWRAKNMARD-LLLLLRDC 292 (339)
Q Consensus 250 ~------------~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~A~~-~L~~l~~~ 292 (339)
+ +...-..+.....+..|+..+.. .....-..++. ++..|++.
T Consensus 94 s~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 94 SRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred hhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 2 12244455666788888877552 22333344554 55666654
No 330
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=36.42 E-value=3.5e+02 Score=25.07 Aligned_cols=268 Identities=13% Similarity=0.108 Sum_probs=138.6
Q ss_pred ccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhc----C-------CChhHHHHHHHHHHHHhcCccchHH
Q 048113 49 CSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQ----C-------QSTTLIELTVAAMLILSSCLENKLE 117 (339)
Q Consensus 49 ~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~----~-------~~~~~~~~a~~~L~nLs~~~~~~~~ 117 (339)
.+.+..-|..|...|.+.-..++.......-..-++.+++.+. + .+.++...|+.+|..+..++..-..
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~ 82 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVST 82 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhh
Confidence 3445555666666666554422211111111233444544442 2 1456788899999888876654443
Q ss_pred HHhc---chHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhc---cccCch
Q 048113 118 IASS---GAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHS---SEKSSG 191 (339)
Q Consensus 118 i~~~---g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~---~~~~~~ 191 (339)
+-+. -.+...+..+.+++ .+-.+....+++|..-...+. +.....+..++..+.. +-++..
T Consensus 83 l~~d~~~~~i~~~i~~l~~~~---------~~K~i~~~~l~~ls~Q~f~~~----~~~~~~~~~l~~~l~~i~~~~~s~s 149 (372)
T PF12231_consen 83 LSDDFASFIIDHSIESLQNPN---------SPKSICTHYLWCLSDQKFSPK----IMTSDRVERLLAALHNIKNRFPSKS 149 (372)
T ss_pred CChHHHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHcCCCCCc----ccchhhHHHHHHHHHHhhccCCchh
Confidence 3322 14667777776642 345566666666655333322 3344455555555433 223567
Q ss_pred HHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhc--cCchhHHHHHH---hcC----
Q 048113 192 LTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICK--SCRDKYRSSIL---KEG---- 262 (339)
Q Consensus 192 ~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~---~~g---- 262 (339)
+....+.++.+.+...|..-..-. .--++.++..+-+....++..|...+..+.. .........+. +..
T Consensus 150 i~~erL~i~~~ll~q~p~~M~~~~--~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~ 227 (372)
T PF12231_consen 150 IISERLNIYKRLLSQFPQQMIKHA--DIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG 227 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc
Confidence 778888888866666665322222 1367888887767677777766666544432 21111111111 112
Q ss_pred -----ChHHHHHhhhc-CCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH---hcCc-ccchHHHHHHHHH
Q 048113 263 -----VMPGLLQLSVD-GTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID---AEGD-TVAGTTLRLVEEM 332 (339)
Q Consensus 263 -----~i~~L~~ll~~-~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~-~~~~~a~~~l~~~ 332 (339)
..+.|.+++.+ ++...-...-..+-.|-.... .-..+.+...+.... ..++ ..+-.|...+..+
T Consensus 228 ~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~------~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~l 301 (372)
T PF12231_consen 228 KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSR------LDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRL 301 (372)
T ss_pred cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCch------hhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 23336667666 333332333333333333221 223445555444443 3344 4577798888888
Q ss_pred HHHhc
Q 048113 333 IAKLS 337 (339)
Q Consensus 333 v~~~~ 337 (339)
|+..+
T Consensus 302 iy~~~ 306 (372)
T PF12231_consen 302 IYASN 306 (372)
T ss_pred HHHhc
Confidence 87543
No 331
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.32 E-value=6.7e+02 Score=28.23 Aligned_cols=175 Identities=13% Similarity=0.098 Sum_probs=100.7
Q ss_pred chhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccch-HHHHhcchHHHHHHHhcCCCCCCCCc---------
Q 048113 72 RNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENK-LEIASSGAIQRLVEILNGDLADDDNS--------- 141 (339)
Q Consensus 72 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~--------- 141 (339)
..|..+++.|....+...+.+.++.++..|.+++.-.-.+.++. +...+.-.+..+..+.++...+++-.
T Consensus 1430 ~~r~~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~ 1509 (1758)
T KOG1791|consen 1430 EIRLIFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFI 1509 (1758)
T ss_pred hcchhhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHH
Confidence 34557788899999999999999999999988887665555552 44444445666666666643322200
Q ss_pred ----------------------------------------cCC--CCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHH
Q 048113 142 ----------------------------------------YGR--ISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCL 179 (339)
Q Consensus 142 ----------------------------------------~~~--~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L 179 (339)
+++ +....+..-...+..--.++.........+....+
T Consensus 1510 A~~~~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~~D~ql~~~~~~~~~~ 1589 (1758)
T KOG1791|consen 1510 AFFSDILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSCPDYQLLQIRNIFETL 1589 (1758)
T ss_pred HHHHHHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCchhhhHHhhcCcceEe
Confidence 000 11113333333333333333333334444555555
Q ss_pred HHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCC--hHHHHH-HHHHHHHhh
Q 048113 180 LQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGS--PQCKEH-AVAILLLIC 247 (339)
Q Consensus 180 v~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~-a~~~L~~l~ 247 (339)
.....+.--+..-+.--+.+|+ +....|.....+++..|...=+..++.++. +..... -..++.++-
T Consensus 1590 lsf~sS~l~~~~S~~LIL~~L~-~~Vk~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l~ 1659 (1758)
T KOG1791|consen 1590 LSFYSSPLASEESKRLILATLQ-KGVKFPFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVLW 1659 (1758)
T ss_pred ehhhcchhHHHHHHHHHHHHHH-hcCCCcHHHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHHH
Confidence 5555443222333445568888 677777766677766899999999998753 333333 444555554
No 332
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=35.98 E-value=2e+02 Score=23.40 Aligned_cols=73 Identities=12% Similarity=0.074 Sum_probs=49.8
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHH-----HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhH
Q 048113 2 EEMLMDNLLNGERETQIQAANELGKLSRR-----QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIR 76 (339)
Q Consensus 2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~~-----~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~ 76 (339)
|+.+-.+..++||..+..+-..-.-+... ....+...+.+..+..++...|+++.+.+ ..+....-|-..+.
T Consensus 59 ~~li~~~~~s~dp~~~~~a~~~~~~~~R~~~L~~~~~~l~~~~~~~r~~~~~~~~d~~i~~~t---~~~f~p~vplt~~g 135 (167)
T PF11157_consen 59 EALIAHYRQSSDPVFRARAESMQATIERYQRLSQQLQALAQASPFERAWYFLRPADPEIAQET---WQNFSPAVPLTPEG 135 (167)
T ss_pred HHHHHHHHhCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhcccHHHHHHH---HHhCCCcCcCCHHH
Confidence 34455555788888888777776666654 45556688999999999999999988866 44444433333333
Q ss_pred H
Q 048113 77 I 77 (339)
Q Consensus 77 i 77 (339)
+
T Consensus 136 i 136 (167)
T PF11157_consen 136 I 136 (167)
T ss_pred H
Confidence 3
No 333
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=35.57 E-value=1.5e+02 Score=23.66 Aligned_cols=122 Identities=11% Similarity=0.073 Sum_probs=82.4
Q ss_pred CcchhhHHhhcCChHHHHHhhcC-CChhHHHHHHHHHHHHhcCcc---chHHHHhcchHHHHHHHhcCCCCCCCCccCCC
Q 048113 70 SERNKIRIVKSGIVPVLLEVLQC-QSTTLIELTVAAMLILSSCLE---NKLEIASSGAIQRLVEILNGDLADDDNSYGRI 145 (339)
Q Consensus 70 ~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~---~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~ 145 (339)
+++.-+.+.+...+..+++++.. .+..++...+.++.-|-.+-. ..-.+.+.+.+..++..--+- .
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~----------~ 84 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDF----------S 84 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCC----------C
Confidence 45556678888999999999988 456677777777777664333 334455788888888754332 5
Q ss_pred CHHHHHHHHHHHHhhcC--CCCChHHHHhc--CcHHHHHHHhhccccCchHHHHHHHHHH
Q 048113 146 SVQAKIDAIATLHNLST--CHQLISPIVSS--GVTYCLLQLIHSSEKSSGLTEKAIALLE 201 (339)
Q Consensus 146 ~~~~~~~a~~~L~nLs~--~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~~a~~~L~ 201 (339)
+.++...=+..|..||. +++...-+... +-.|.+...++-....+.+.+.|.+.+.
T Consensus 85 ~ee~l~yYIsfLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~ 144 (149)
T PF09758_consen 85 DEEVLSYYISFLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTIT 144 (149)
T ss_pred cchhHHHHHHHHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHH
Confidence 77888888888888875 55555555443 6677666655433224677777776654
No 334
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=35.51 E-value=1.9e+02 Score=21.72 Aligned_cols=39 Identities=23% Similarity=0.128 Sum_probs=31.6
Q ss_pred ChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113 40 IIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK 79 (339)
Q Consensus 40 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~ 79 (339)
+|+.|+..|.+.++++...|...|...+.. +..-+.++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~-~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACED-KEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-hhhHHHHHH
Confidence 578899999999999999999999999994 455555544
No 335
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.44 E-value=65 Score=30.96 Aligned_cols=68 Identities=12% Similarity=0.123 Sum_probs=49.4
Q ss_pred ChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcC--cccchHHHHHHH
Q 048113 263 VMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEG--DTVAGTTLRLVE 330 (339)
Q Consensus 263 ~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~a~~~l~ 330 (339)
++..|.+.+.+.++.++..|+.+|..+.+++.+..+......+.+..+|..+.-.+ .++++++.-++.
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~ 108 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELID 108 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHH
Confidence 67777888888889999999999998888776655656667788888777765332 445666555444
No 336
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=35.34 E-value=2.2e+02 Score=22.33 Aligned_cols=65 Identities=12% Similarity=0.102 Sum_probs=49.1
Q ss_pred HHHHHHcC-CCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHH-HHHHhcc---CCHHHHHHHHHHHHHhcc
Q 048113 4 MLMDNLLN-GERETQIQAANELGKLSRR----QKHKLVERGIIAP-LISMLCS---QDYEAIEAALLSLLSLAC 68 (339)
Q Consensus 4 ~Lv~~L~s-~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~-Lv~lL~~---~~~~~~~~A~~~L~~Ls~ 68 (339)
.|...|.+ .++.++..|+..|--+.++ ....+...+.+.. |++++.. .+..++...+..+...+.
T Consensus 42 alkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 42 ALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 45566764 5899999999988888887 5566667888887 8888863 245788888888877765
No 337
>PF14961 BROMI: Broad-minded protein
Probab=35.24 E-value=5.5e+02 Score=28.03 Aligned_cols=209 Identities=15% Similarity=0.144 Sum_probs=120.8
Q ss_pred HHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcC----C------ChhHHHHHHHHHHHHhcCccchHHHHh-------
Q 048113 58 AALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQC----Q------STTLIELTVAAMLILSSCLENKLEIAS------- 120 (339)
Q Consensus 58 ~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~----~------~~~~~~~a~~~L~nLs~~~~~~~~i~~------- 120 (339)
-...+|+.||..+.-..+.+.+..++..|+.-+.+ . ++......+.+|..++..+.++..+.-
T Consensus 485 lV~eiL~~lc~~~~ca~eCL~~~~Vi~~LL~Pi~~~l~~~~~~~~~~e~tli~iAdiLariAs~~~Gl~lLLyg~n~~s~ 564 (1296)
T PF14961_consen 485 LVMEILRMLCDQKECAVECLYKDTVIEVLLQPIHSLLKGTEASKNCSETTLIHIADILARIASTEEGLALLLYGENMSSS 564 (1296)
T ss_pred HHHHHHHHHhcCHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHhhccchhhhhcccccCcc
Confidence 34677888888655556677788888888775532 2 134556678999999988877655442
Q ss_pred ----cchHHHHHHHhcCCCCCC--CCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccc-------
Q 048113 121 ----SGAIQRLVEILNGDLADD--DNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSE------- 187 (339)
Q Consensus 121 ----~g~i~~Lv~ll~~~~~~~--~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~------- 187 (339)
..+...++++-+.-.+++ .+.-++..+.+.-.-+.+-+.+-...++-..+...|.-..+.+.-+..+
T Consensus 565 ~~~~~~~ahiIaqFtkklL~~~~~~~~~s~~~~~v~gafifvcRQ~Y~TCeGL~~L~pY~LH~~ia~Awkk~s~lse~~~ 644 (1296)
T PF14961_consen 565 EEESSTAAHIIAQFTKKLLDEDISTLSGSEMLPVVKGAFIFVCRQMYSTCEGLQVLIPYGLHESIANAWKKTSLLSERIP 644 (1296)
T ss_pred ccCCCchhhHHHHHHHHHcCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhHHHhhhcchHHHHHHHHHHhhhhhccCC
Confidence 224444444433211111 0111112233444444444555556777777777787777766554320
Q ss_pred ------c--C-------chH--HHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC-C-----hHHHHHHHHHH-
Q 048113 188 ------K--S-------SGL--TEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEG-S-----PQCKEHAVAIL- 243 (339)
Q Consensus 188 ------~--~-------~~~--~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~-----~~~~~~a~~~L- 243 (339)
+ . ..+ -+.-+..|- |.+.+|.+...+.+ .|++...+..|.+. . ........+++
T Consensus 645 tpv~~s~s~ss~~~~~~n~~~Wee~LlD~ll-nfa~TPkG~~lL~~-tg~i~~Cv~~m~~~~~kklQvS~~ekfgyGv~v 722 (1296)
T PF14961_consen 645 TPVPGSDSVSSVSQESQNIMLWEETLLDNLL-NFAATPKGLLLLQQ-TGAINECVSFMFNRYTKKLQVSRCEKFGYGVMV 722 (1296)
T ss_pred CCCCCCCccccccccchhHHHHHHHHHHHHH-HhhcCHHHHHHHHh-cCcHHHHHHHHHHHHhhccccccccccCccEEE
Confidence 0 0 001 134557777 68999999988876 89999999887542 1 11112122222
Q ss_pred HHhhccCchhHHHHHHhcCChHHHHHh
Q 048113 244 LLICKSCRDKYRSSILKEGVMPGLLQL 270 (339)
Q Consensus 244 ~~l~~~~~~~~~~~~~~~g~i~~L~~l 270 (339)
.+++... .+...+.+.|.+..|+.=
T Consensus 723 tqvasT~--~G~~AL~~sGfi~~Lv~d 747 (1296)
T PF14961_consen 723 TQVASTA--AGAQALQKSGFIKALVTD 747 (1296)
T ss_pred EEeecCc--hHHHHHHhccHHHHHHHH
Confidence 4444432 255677778888877653
No 338
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.67 E-value=6.8e+02 Score=27.84 Aligned_cols=168 Identities=11% Similarity=0.155 Sum_probs=85.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhc----c-ccCchHHHHHHHHHHHhhcCCHhhh-HHHHhhC
Q 048113 145 ISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHS----S-EKSSGLTEKAIALLENIVSSSEDAL-QEIAATC 218 (339)
Q Consensus 145 ~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~----~-~~~~~~~~~a~~~L~n~l~~~~~~~-~~i~~~~ 218 (339)
...+++.....+|.++-..+- ..++. | .+...+++++ + ++..++.+.+...|. +++.+.-.. ..=.- .
T Consensus 854 ~~~evr~~sl~~l~silet~g--e~ll~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lr-lIssDfLqSLp~sci-~ 927 (1610)
T KOG1848|consen 854 RGVEVRISSLEALVSILETVG--EHLLH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLR-LISSDFLQSLPTSCI-L 927 (1610)
T ss_pred ccceeeHHHHHHHHHHHhccc--hhhcc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhh-hhhhcchhcCChHHH-H
Confidence 567788888888887744322 22222 2 4555555543 1 123566777777777 555431100 00000 2
Q ss_pred CcHHHHHHHhhc-CChHHHHHHHHHHHHhhccCchhHHHHHHh---cCChHHHHHhhhc--CCHHHHHHHHHH--HHHHh
Q 048113 219 GAIRALVETIEE-GSPQCKEHAVAILLLICKSCRDKYRSSILK---EGVMPGLLQLSVD--GTWRAKNMARDL--LLLLR 290 (339)
Q Consensus 219 g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---~g~i~~L~~ll~~--~~~~~~~~A~~~--L~~l~ 290 (339)
++++.++..-+. .+..+.-.|++.+|.++.. .+..+.. .+--...++-+.+ ....+--.++|+ +.+|+
T Consensus 928 ~lidtl~~fs~QktdlNISltAi~lfWtvsDf----l~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~ 1003 (1610)
T KOG1848|consen 928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVSDF----LKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLA 1003 (1610)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHHHH----HHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHH
Confidence 455555555543 4566777888888888743 1221211 1111122222222 223333455553 35555
Q ss_pred ccCCCcchhhhhhhHHHHHHHHHHHhcCcccchH
Q 048113 291 DCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGT 324 (339)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 324 (339)
+..+. .+..+.++.+.-+.+.+..+|-..+..
T Consensus 1004 ~~~~d--sr~eVRngAvqtlfri~~Shg~~l~~~ 1035 (1610)
T KOG1848|consen 1004 DLCED--SRAEVRNGAVQTLFRIFNSHGSKLGTN 1035 (1610)
T ss_pred HHhcc--chHHHhhhHHHHHHHHHhhhcccCChh
Confidence 54432 344566777777777777777766664
No 339
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=34.59 E-value=75 Score=29.53 Aligned_cols=95 Identities=11% Similarity=0.109 Sum_probs=68.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCc-chhhHHhhcCChHHHHH
Q 048113 10 LNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSE-RNKIRIVKSGIVPVLLE 88 (339)
Q Consensus 10 ~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~-~~~~~i~~~g~i~~Lv~ 88 (339)
.+++|+..+.+|..+.+=.. ....++..+.+-|.+.++.+...|+..+..|+.++. ..+..+.......-|..
T Consensus 22 T~enW~~IlDvCD~v~~~~~------~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~a 95 (462)
T KOG2199|consen 22 TSENWSLILDVCDKVGSDPD------GGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRA 95 (462)
T ss_pred ccccHHHHHHHHHhhcCCCc------ccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHH
Confidence 35566666666555543221 234567888888999999999999999999987543 34777778888888999
Q ss_pred hhc-CCChhHHHHHHHHHHHHhc
Q 048113 89 VLQ-CQSTTLIELTVAAMLILSS 110 (339)
Q Consensus 89 lL~-~~~~~~~~~a~~~L~nLs~ 110 (339)
++. +..+.+.+....++.+.+.
T Consensus 96 l~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 96 LIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHhhcccHHHHHHHHHHHHHHHH
Confidence 998 4467777777677777664
No 340
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.33 E-value=1.2e+02 Score=31.78 Aligned_cols=85 Identities=13% Similarity=0.058 Sum_probs=62.0
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHH--hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhc
Q 048113 6 MDNLLNGERETQIQAANELGKLSRR---QKHKLV--ERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKS 80 (339)
Q Consensus 6 v~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~ 80 (339)
+.+|.+.+...|.+|+.++....-- +...+. -+-.+|.++..+..+++-+...|..++.+++....+.-..=+-.
T Consensus 809 ~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~ 888 (1014)
T KOG4524|consen 809 IHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLE 888 (1014)
T ss_pred HHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4567788999999999998764432 333333 37789999999999999999999999999998755543333334
Q ss_pred CChHHHHHhh
Q 048113 81 GIVPVLLEVL 90 (339)
Q Consensus 81 g~i~~Lv~lL 90 (339)
+++|.+-.++
T Consensus 889 dvlP~l~~~~ 898 (1014)
T KOG4524|consen 889 DVLPWLKHLC 898 (1014)
T ss_pred HHHHHHHHHH
Confidence 5666665544
No 341
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=33.20 E-value=4.6e+02 Score=25.40 Aligned_cols=119 Identities=15% Similarity=0.212 Sum_probs=67.8
Q ss_pred HHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhcc--CchhHHHHHHhcCChHHHHHhhh-cCCHHHHHHHHHHHHHHh
Q 048113 214 IAATCGAIRALVETIEEGSPQCKEHAVAILLLICKS--CRDKYRSSILKEGVMPGLLQLSV-DGTWRAKNMARDLLLLLR 290 (339)
Q Consensus 214 i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~A~~~L~~l~ 290 (339)
+....++++.+++++.. +.+...-+..+. +.. .+....+-+.+.+.++.|+.++. +.++..+..|+.+|..+.
T Consensus 16 ik~~~~~v~~llkHI~~--~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII 91 (475)
T PF04499_consen 16 IKSQPNFVDNLLKHIDT--PAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAII 91 (475)
T ss_pred HHhCccHHHHHHHhcCC--cHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 33346777777777753 444443333333 111 12234444556899999999986 457788999999887774
Q ss_pred ccCC-Ccc-----------hhhhhhhHHHHHHHHHHHh-cCcccchHHHHHHHHHHHHh
Q 048113 291 DCSS-FGS-----------RSKQLKNELVEQIMQEIDA-EGDTVAGTTLRLVEEMIAKL 336 (339)
Q Consensus 291 ~~~~-~~~-----------~~~~~~~~~~~~i~~~~~~-~~~~~~~~a~~~l~~~v~~~ 336 (339)
..+. ... -++....+.++.++..+.. .+...-..+-.++-++|+|-
T Consensus 92 ~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 92 RISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred HHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 4321 100 1123345666666655532 33333334666777776553
No 342
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=33.14 E-value=35 Score=18.42 Aligned_cols=12 Identities=42% Similarity=0.523 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHH
Q 048113 16 TQIQAANELGKL 27 (339)
Q Consensus 16 ~~~~a~~~L~~l 27 (339)
+|..|+.+|.++
T Consensus 3 vR~~aa~aLg~~ 14 (30)
T smart00567 3 VRHEAAFALGQL 14 (30)
T ss_pred HHHHHHHHHHHc
Confidence 455555555554
No 343
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=32.32 E-value=81 Score=25.14 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=19.9
Q ss_pred hHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113 123 AIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST 162 (339)
Q Consensus 123 ~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~ 162 (339)
-|++|+.+|++ ++..+...|+.+|.+-..
T Consensus 95 NV~~LI~~L~~-----------~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 95 NVQPLIDLLKS-----------DDEELAEEAAEALKNTLL 123 (154)
T ss_dssp THHHHHHGG-------------G-TTTHHHHHHHHHT--T
T ss_pred cHHHHHHHHcC-----------CcHHHHHHHHHHHHhhHH
Confidence 48899999987 677888888888887544
No 344
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=32.20 E-value=90 Score=23.99 Aligned_cols=62 Identities=15% Similarity=0.128 Sum_probs=42.0
Q ss_pred cHHHHHHHhhcCC----hHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHH
Q 048113 220 AIRALVETIEEGS----PQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLL 286 (339)
Q Consensus 220 ~i~~Lv~lL~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L 286 (339)
.+..+.+.+.... +.....++.++.......+. ..+.+.+.++.+.+++.++ ..+..|+.+|
T Consensus 83 i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~---~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 83 ILEILSQILSQSSSEANEELVKAALKCLKSWISWIPI---ELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-H---HHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCH---HHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 3444445554432 77888899999888875433 5677778999999988544 4477777765
No 345
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=31.48 E-value=3e+02 Score=22.67 Aligned_cols=146 Identities=10% Similarity=0.082 Sum_probs=82.3
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113 83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST 162 (339)
Q Consensus 83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~ 162 (339)
++.++++..+++..++..|+..+.-....-=..+ ...+|.|+-+..+ .++.++..|...+..+..
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP----~~cvp~lIAL~ts-----------~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNP----KQCVPTLIALETS-----------PNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh----HHHHhHhhhhhCC-----------CChHHHHHHHHHHHHHHH
Confidence 4567777778888999999988876654221111 1268999999888 799999999999999865
Q ss_pred CC-CChHHHHhcCcHHHHHHHhhccccCch--H---HHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC-----
Q 048113 163 CH-QLISPIVSSGVTYCLLQLIHSSEKSSG--L---TEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEG----- 231 (339)
Q Consensus 163 ~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~--~---~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~----- 231 (339)
.. .....=... ++..-..+-+.-..+.. . ...-+.-+...+......|. .++..|++.+...
T Consensus 75 K~~s~v~~~~~~-gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~------~Fl~~l~k~f~~~~~~~~ 147 (187)
T PF12830_consen 75 KHESLVESRYSE-GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRR------KFLKSLLKQFDFDLTKLS 147 (187)
T ss_pred HhHHHHHHHHHH-HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHH------HHHHHHHHHHHhhccccc
Confidence 33 322221112 34433333322110111 0 23333444423333334443 3556677766543
Q ss_pred ---ChHHHHHHHHHHHHhhccC
Q 048113 232 ---SPQCKEHAVAILLLICKSC 250 (339)
Q Consensus 232 ---~~~~~~~a~~~L~~l~~~~ 250 (339)
.+.-......+..||+.-+
T Consensus 148 ~~~~~~~l~~~~Fla~nLA~l~ 169 (187)
T PF12830_consen 148 SESSPSDLDFLLFLAENLATLP 169 (187)
T ss_pred cccchhHHHHHHHHHHHHhcCC
Confidence 2334455666667776543
No 346
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=29.73 E-value=2.6e+02 Score=31.30 Aligned_cols=101 Identities=16% Similarity=0.130 Sum_probs=61.5
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh-cCChHHH
Q 048113 8 NLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK-SGIVPVL 86 (339)
Q Consensus 8 ~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~-~g~i~~L 86 (339)
+|+|.++.++.-+......+-... +.+....++..|+..+.+++......|+.+|..|+..++ ..+.. +-.+..+
T Consensus 443 Ll~S~e~~v~~FG~~~Y~~lF~~f-ds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~---~~l~~fa~~l~gi 518 (1426)
T PF14631_consen 443 LLRSKEPSVREFGSHLYKYLFKEF-DSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNP---SELQPFATFLKGI 518 (1426)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-H---HHHHHTHHHHHGG
T ss_pred HHhCCCHHHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHH
Confidence 456778887777776666655541 123345588899999888877777899999999998433 33322 2334445
Q ss_pred HHhhcCCChhHHHHHHHHHHHHhcCc
Q 048113 87 LEVLQCQSTTLIELTVAAMLILSSCL 112 (339)
Q Consensus 87 v~lL~~~~~~~~~~a~~~L~nLs~~~ 112 (339)
+..++.=+..-.......|+.++..+
T Consensus 519 LD~l~~Ls~~qiR~lf~il~~La~~~ 544 (1426)
T PF14631_consen 519 LDYLDNLSLQQIRKLFDILCTLAFSD 544 (1426)
T ss_dssp GGGGGG--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 55555544444455577777777543
No 347
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.33 E-value=7.4e+02 Score=27.59 Aligned_cols=122 Identities=15% Similarity=0.083 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhhcCCC-CChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHH
Q 048113 147 VQAKIDAIATLHNLSTCH-QLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALV 225 (339)
Q Consensus 147 ~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv 225 (339)
.++...+...|.-++.+- ..-..=+-.|.++.++.+-+.. .+..+--.|++.+. .++..-.++..-..+.+.-...+
T Consensus 900 k~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~fs~Qk-tdlNISltAi~lfW-tvsDfl~~km~S~sed~~~~~~~ 977 (1610)
T KOG1848|consen 900 KKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLVFSRQK-TDLNISLTAIGLFW-TVSDFLKNKMFSTSEDSCAYNSV 977 (1610)
T ss_pred hhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHHHHhhh-ccccccHHHHHHHH-HHHHHHHhhhhccchhhhhhcch
Confidence 334444555555444321 1111112224555666555443 24566667777777 44433222222111123333444
Q ss_pred HHhhcC--ChHH-----HHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCC
Q 048113 226 ETIEEG--SPQC-----KEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGT 275 (339)
Q Consensus 226 ~lL~~~--~~~~-----~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 275 (339)
+.+.+. ...+ .......|.++|.++.. -+..|+++.|.+.+.+..
T Consensus 978 e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~-----eVRngAvqtlfri~~Shg 1029 (1610)
T KOG1848|consen 978 EDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRA-----EVRNGAVQTLFRIFNSHG 1029 (1610)
T ss_pred hhhcccccchhhhhhHHHHHHHHHHHHHhccchH-----HHhhhHHHHHHHHHhhhc
Confidence 444432 2222 23333444556654322 244577888877776543
No 348
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=28.56 E-value=1.7e+02 Score=20.97 Aligned_cols=57 Identities=19% Similarity=0.113 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHH
Q 048113 145 ISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLE 201 (339)
Q Consensus 145 ~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~ 201 (339)
++..+|..|+..|..++..-.....-.+..++..+.+.+.++..+....--|+..|.
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~ 74 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLS 74 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 578899999999999986432222222334566777777765433344444555555
No 349
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=28.37 E-value=6.1e+02 Score=28.51 Aligned_cols=109 Identities=13% Similarity=0.144 Sum_probs=72.0
Q ss_pred cCChHHHHH----HhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc
Q 048113 38 RGIIAPLIS----MLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE 113 (339)
Q Consensus 38 ~g~i~~Lv~----lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~ 113 (339)
.+.++.++. ++.+.++.++.-+......+-...+. +.+..++..|+.++.+++..-...|+.+|..|+...+
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~ 505 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNP 505 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccH
Confidence 455666654 46678889988888877777775432 3344577889999988877667889999999996332
Q ss_pred chHHHH-hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC
Q 048113 114 NKLEIA-SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC 163 (339)
Q Consensus 114 ~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~ 163 (339)
..+. -...+..+++.+.+ -+..-......+|+.|+..
T Consensus 506 --~~l~~fa~~l~giLD~l~~-----------Ls~~qiR~lf~il~~La~~ 543 (1426)
T PF14631_consen 506 --SELQPFATFLKGILDYLDN-----------LSLQQIRKLFDILCTLAFS 543 (1426)
T ss_dssp --HHHHHTHHHHHGGGGGGGG-------------HHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHhcC
Confidence 3333 23456667777766 5666666778888888763
No 350
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=27.56 E-value=58 Score=19.56 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=19.0
Q ss_pred CChHHHHHhhhcCCHHHHHHHHHHH
Q 048113 262 GVMPGLLQLSVDGTWRAKNMARDLL 286 (339)
Q Consensus 262 g~i~~L~~ll~~~~~~~~~~A~~~L 286 (339)
.+...+.+.+.+.++.+|+.|..++
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4566667778888999999888753
No 351
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=27.54 E-value=1.8e+02 Score=20.91 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccC--CHHHHHHHHHHHHHh
Q 048113 12 GERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQ--DYEAIEAALLSLLSL 66 (339)
Q Consensus 12 ~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~L 66 (339)
..+..|..|+..|..++.. ....-....++..+.+.+.++ +.....-|+..|..|
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999986 333334556777777766543 455677788888777
No 352
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=27.49 E-value=5.4e+02 Score=24.44 Aligned_cols=155 Identities=17% Similarity=0.153 Sum_probs=89.9
Q ss_pred HHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhh--cc------ccCchHHHH
Q 048113 124 IQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIH--SS------EKSSGLTEK 195 (339)
Q Consensus 124 i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~--~~------~~~~~~~~~ 195 (339)
-..++++|.+. .-...+...+.++.-|+.+...-..+...--.+.|..+-. .. ..+..+...
T Consensus 47 ~e~i~~Vle~~----------~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~E 116 (532)
T KOG4464|consen 47 GERIFEVLENG----------EPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIME 116 (532)
T ss_pred HHHHHHHHhcC----------CCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHH
Confidence 45667777662 2355666777778888877665544433333444443321 11 113467888
Q ss_pred HHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC-----ChHHHHHHHHHHHHhhccCchhHHHHHH-hcCChHHHHH
Q 048113 196 AIALLENIVSSSEDALQEIAATCGAIRALVETIEEG-----SPQCKEHAVAILLLICKSCRDKYRSSIL-KEGVMPGLLQ 269 (339)
Q Consensus 196 a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~g~i~~L~~ 269 (339)
++.+|+|.+-..+..+..... ......+.+.+... -..++-.=...|.-+..-. ...|.+++ +.++++.+.+
T Consensus 117 slKCLcNlvf~Sq~~q~~~~~-~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale-~~~Rsql~~~l~Gl~~lt~ 194 (532)
T KOG4464|consen 117 SLKCLCNLVFHSQRAQDLFLE-NPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALE-TDHRSQLIAELLGLELLTN 194 (532)
T ss_pred HHHHHHHHHhccHHHHHHHHh-hhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhh-HHHHHHHHHHhcccHHHHH
Confidence 999999777777778877776 56666666655421 1122222233333333322 23566654 5899999998
Q ss_pred hhhcC------------CHHHHHHHHHHHHHHh
Q 048113 270 LSVDG------------TWRAKNMARDLLLLLR 290 (339)
Q Consensus 270 ll~~~------------~~~~~~~A~~~L~~l~ 290 (339)
.+.+. +|+-...|+.+|.-|-
T Consensus 195 ~led~lgidse~n~~~l~pqe~n~a~EaLK~~F 227 (532)
T KOG4464|consen 195 WLEDKLGIDSEINVPPLNPQETNRACEALKVFF 227 (532)
T ss_pred HhhccccCCCCcCCCCCCHHHHHHHHHHHHHHh
Confidence 87652 1244566777775553
No 353
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=27.02 E-value=70 Score=16.92 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhh
Q 048113 149 AKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIH 184 (339)
Q Consensus 149 ~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~ 184 (339)
+|..|+.+|.++.. .-+++.|++.|+
T Consensus 1 VR~~Aa~aLg~igd----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----------HHHHHHHHHHhc
Confidence 45667777777643 225666666654
No 354
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=26.75 E-value=3.9e+02 Score=24.19 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=50.4
Q ss_pred cHHHHHHHhhccc--cCchHHHHHHHHHHHhhcCCHhhhHHHHhh--------C--CcHHHHHHHhh------cCChHHH
Q 048113 175 VTYCLLQLIHSSE--KSSGLTEKAIALLENIVSSSEDALQEIAAT--------C--GAIRALVETIE------EGSPQCK 236 (339)
Q Consensus 175 ~i~~Lv~ll~~~~--~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~--------~--g~i~~Lv~lL~------~~~~~~~ 236 (339)
++..|+..+-... ..-+++.+|+.++...+..+++.+..++++ . .....|.+.|- +.++.-.
T Consensus 35 vi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~ 114 (312)
T PF04869_consen 35 VIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRC 114 (312)
T ss_dssp HHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHH
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHH
Confidence 4455555553332 245778888899997888889999888752 1 12223555444 2355556
Q ss_pred HHHHHHHHHhhccCchhHHHHHHh
Q 048113 237 EHAVAILLLICKSCRDKYRSSILK 260 (339)
Q Consensus 237 ~~a~~~L~~l~~~~~~~~~~~~~~ 260 (339)
..|+.+|..+-.+++. .|+.+..
T Consensus 115 wfAa~il~hll~dn~~-~Ke~al~ 137 (312)
T PF04869_consen 115 WFAAVILMHLLRDNPE-AKEQALR 137 (312)
T ss_dssp HHHHHHHHHHHTT-HH-HHHHHTT
T ss_pred HHHHHHHHHHHhcCHH-HHHHHHc
Confidence 6788888888877643 5665543
No 355
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.71 E-value=5e+02 Score=24.36 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=69.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113 4 MLMDNLLNGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSG 81 (339)
Q Consensus 4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g 81 (339)
.|...+++-+..+|..|...|+.+-.. ..-...-..+++.+..+..+.+..+|......+-.+....-.......-.=
T Consensus 62 eLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l 141 (393)
T KOG2149|consen 62 ELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSL 141 (393)
T ss_pred HHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHH
Confidence 356667788999999999999998776 222223356777777777777888888888888776653222220000001
Q ss_pred ChHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 048113 82 IVPVLLEVLQCQSTTLIELTVAAMLILSS 110 (339)
Q Consensus 82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~ 110 (339)
.++.+-.-+.+-.+++++.++..|.-|..
T Consensus 142 ~~~yi~~AMThit~~i~~dslkfL~~Ll~ 170 (393)
T KOG2149|consen 142 LMPYISSAMTHITPEIQEDSLKFLSLLLE 170 (393)
T ss_pred HHHHHHHHHhhccHHHHHhhHHHHHHHHH
Confidence 22333333455678999999998888874
No 356
>PHA02855 anti-apoptotic membrane protein; Provisional
Probab=26.22 E-value=1.7e+02 Score=23.59 Aligned_cols=56 Identities=11% Similarity=0.246 Sum_probs=40.9
Q ss_pred HHHHHh-hhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCccc
Q 048113 265 PGLLQL-SVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTV 321 (339)
Q Consensus 265 ~~L~~l-l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 321 (339)
..+++- ..+..|.++.++..+|..+.+--.+. +...+....+..++..++.+|.++
T Consensus 79 ~~iie~L~~D~rPSVKLA~iSLlSiIiek~~~k-n~~~v~s~lid~I~~kiSe~~~di 135 (180)
T PHA02855 79 SQIIESLNNDNRPSVKLAIISLISMIAEKKGYK-NNNIVMSDLINEIANKISENSKDL 135 (180)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhhhhhHHH
Confidence 344444 47788999999999999998765542 445577888888888887666554
No 357
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.15 E-value=2.3e+02 Score=31.12 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=48.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHh--cCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVE--RGIIAPLISMLCSQDYEAIEAALLSLLSLAC 68 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~ 68 (339)
+.|-..|.+.+.++|.+|+..++.+.......+.+ ...+...+.-+.+.+.++|...+....++-.
T Consensus 262 p~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~ 329 (1266)
T KOG1525|consen 262 PQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLL 329 (1266)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHh
Confidence 45677788999999999999999998873333332 4566666666677788888887776665554
No 358
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=25.78 E-value=7.4e+02 Score=25.46 Aligned_cols=65 Identities=18% Similarity=0.098 Sum_probs=41.4
Q ss_pred HHHHHH-HHhhcCC---CCChHHHHhcCcHHHHHHHhhcccc----------CchHHHHHHHHHHHhhcC-CHhhhHHHH
Q 048113 151 IDAIAT-LHNLSTC---HQLISPIVSSGVTYCLLQLIHSSEK----------SSGLTEKAIALLENIVSS-SEDALQEIA 215 (339)
Q Consensus 151 ~~a~~~-L~nLs~~---~~~~~~i~~~g~i~~Lv~ll~~~~~----------~~~~~~~a~~~L~n~l~~-~~~~~~~i~ 215 (339)
..++.+ +..+++. +-.+..+...|+.+.++..+..+-. .....+.|+.++. ..+. ++.+...+.
T Consensus 475 ~lamet~vl~lsSk~~~d~~k~elr~Lg~lq~iv~~i~~~~~~~~~~~~e~~~~~tL~rC~rvle-s~s~hn~snq~yLi 553 (865)
T KOG2152|consen 475 SLAMETLVLILSSKRAGDWFKSELRNLGGLQHIVSKIETNVSPTSDNGDESSVILTLERCLRVLE-SVSVHNGSNQGYLI 553 (865)
T ss_pred hhhhheeEEEEeccccchhHHHHHHhcchHHHHHHHHHhccCcCCCCcchhhHHHhHHHHHHHhh-cccccCcchhHHHH
Confidence 456666 5555542 3446778888999999988855210 1223478999998 5555 566766665
Q ss_pred h
Q 048113 216 A 216 (339)
Q Consensus 216 ~ 216 (339)
.
T Consensus 554 s 554 (865)
T KOG2152|consen 554 S 554 (865)
T ss_pred h
Confidence 4
No 359
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=25.61 E-value=7.5e+02 Score=25.44 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHH--HHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHH
Q 048113 235 CKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWR--AKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQ 312 (339)
Q Consensus 235 ~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~--~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~ 312 (339)
....++.++.--..+..+.+|..+.+.|++...++.+.+.... .-..+..++..|+... ....+....++..++
T Consensus 348 m~trCLSaISla~Kc~~p~FR~~lRa~G~v~~vfkalmDs~~~d~Lsl~tsalMylLs~d~----lnmdldf~Slelmi~ 423 (865)
T KOG2152|consen 348 METRCLSAISLADKCVMPDFRMHLRAHGMVDAVFKALMDSHEDDLLSLCTSALMYLLSRDK----LNMDLDFLSLELMIH 423 (865)
T ss_pred HHHHHHhhhhhhhhccChHHHHHHHHcccHHHHHHHHhccccchhhHHHHHHHHHHHhhhh----hcccccchhHHHHHH
Confidence 3444444443333334456999999999999999987765422 2233334455555443 233455666777777
Q ss_pred HHHhcC
Q 048113 313 EIDAEG 318 (339)
Q Consensus 313 ~~~~~~ 318 (339)
.+..++
T Consensus 424 LL~~ek 429 (865)
T KOG2152|consen 424 LLRLEK 429 (865)
T ss_pred HHhhhc
Confidence 776554
No 360
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=25.28 E-value=3.6e+02 Score=21.60 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=19.6
Q ss_pred cHHHHHHHhhccccCchHHHHHHHHHHH
Q 048113 175 VTYCLLQLIHSSEKSSGLTEKAIALLEN 202 (339)
Q Consensus 175 ~i~~Lv~ll~~~~~~~~~~~~a~~~L~n 202 (339)
-|++|+.+|.+. +..+...|..+|.+
T Consensus 95 NV~~LI~~L~~~--d~~lA~~Aa~aLk~ 120 (154)
T PF11791_consen 95 NVQPLIDLLKSD--DEELAEEAAEALKN 120 (154)
T ss_dssp THHHHHHGG--G---TTTHHHHHHHHHT
T ss_pred cHHHHHHHHcCC--cHHHHHHHHHHHHh
Confidence 388999999764 57889999999994
No 361
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=25.12 E-value=1.2e+02 Score=27.12 Aligned_cols=48 Identities=25% Similarity=0.295 Sum_probs=37.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH-----------------HHHHHHhcCChHHHHHHhcc
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR-----------------QKHKLVERGIIAPLISMLCS 50 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~-----------------~~~~i~~~g~i~~Lv~lL~~ 50 (339)
+.+++.|.+++...|.+|+++|.=++.+ |-..+.+.|+++.++.+|+.
T Consensus 63 ~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 63 EKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3567778888999999999998887742 55666788999998888764
No 362
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=24.84 E-value=4e+02 Score=22.05 Aligned_cols=74 Identities=9% Similarity=-0.053 Sum_probs=48.6
Q ss_pred CcHHHHHHHhhcCChHHHHHHHHHHHHhhcc-CchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCC
Q 048113 219 GAIRALVETIEEGSPQCKEHAVAILLLICKS-CRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSS 294 (339)
Q Consensus 219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 294 (339)
-.++.+.+-|.......+..|......+... .+++.-..+ -..+++|.+-+.+.++.+...++.+|+.|...++
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl--PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL--PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 4567777777666555556666666555544 323222221 2367777777888999999999999999966544
No 363
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=24.62 E-value=4.8e+02 Score=22.82 Aligned_cols=102 Identities=16% Similarity=0.147 Sum_probs=58.9
Q ss_pred CcHHHHHHHhhccc---------cCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHH
Q 048113 174 GVTYCLLQLIHSSE---------KSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILL 244 (339)
Q Consensus 174 g~i~~Lv~ll~~~~---------~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~ 244 (339)
-.+|.|..+|.+.. ++......++..|+ ++.+ ..+++.++++++.++...- ..+.
T Consensus 31 ~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLa-----------q~re-~~A~~~li~l~~~~~~~~~----~l~G 94 (249)
T PF06685_consen 31 EITPELLKILEDAIERANELLDDEEYNLHFYALYLLA-----------QFRE-ERALPPLIRLFSQDDDFLE----DLFG 94 (249)
T ss_pred HhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHH-----------HHhh-hhhHHHHHHHHcCCcchHH----HHHc
Confidence 46888888886621 11123445555555 3333 6789999999976543111 1111
Q ss_pred HhhccCchhHHHHH--HhcCChHHHHHhhhcCCHH--HHHHHHHHHHHHhccCC
Q 048113 245 LICKSCRDKYRSSI--LKEGVMPGLLQLSVDGTWR--AKNMARDLLLLLRDCSS 294 (339)
Q Consensus 245 ~l~~~~~~~~~~~~--~~~g~i~~L~~ll~~~~~~--~~~~A~~~L~~l~~~~~ 294 (339)
.... +.....+ .-.|-++.|.+++.+++.. +|..|..+|..+...++
T Consensus 95 D~~t---E~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~ 145 (249)
T PF06685_consen 95 DFIT---EDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGP 145 (249)
T ss_pred chhH---hHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 1111 1111222 2246677888888877544 68888889988887665
No 364
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=24.19 E-value=3e+02 Score=20.32 Aligned_cols=57 Identities=18% Similarity=0.041 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH--hcCcccchHHHHHHHHHHHHhc
Q 048113 275 TWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID--AEGDTVAGTTLRLVEEMIAKLS 337 (339)
Q Consensus 275 ~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~a~~~l~~~v~~~~ 337 (339)
+...|.++...+..+-+... .--.....+|+..+. .+-++++..|-++|...|..|.
T Consensus 28 ~~~ek~~~l~si~~lI~~~~------~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~ 86 (107)
T PF08064_consen 28 PIPEKKRALRSIEELIKLGG------SHISSARPQIMACLQSALEIPELREEALSCWNCFIKTLD 86 (107)
T ss_pred CHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCC
Confidence 44456667766655544221 123455566666665 4556777778888888777664
No 365
>PLN03205 ATR interacting protein; Provisional
Probab=23.51 E-value=2.9e+02 Score=26.05 Aligned_cols=113 Identities=12% Similarity=0.089 Sum_probs=66.0
Q ss_pred CChHHHHHHhccCCHHHHHHHHHHHHHhccC---CcchhhHHhhcCChHHHHHhhc----CCChhHHHHHHHHHHHHhc-
Q 048113 39 GIIAPLISMLCSQDYEAIEAALLSLLSLACG---SERNKIRIVKSGIVPVLLEVLQ----CQSTTLIELTVAAMLILSS- 110 (339)
Q Consensus 39 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~---~~~~~~~i~~~g~i~~Lv~lL~----~~~~~~~~~a~~~L~nLs~- 110 (339)
..+++|+.+..-++..+...+++.|..+-.| ++.--+.--+.+-+..+--+.+ +..+.++..|+.++--+..
T Consensus 323 tLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlms 402 (652)
T PLN03205 323 SLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMS 402 (652)
T ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhc
Confidence 3456777777778877888887776544432 2221111122233333222222 2234467777666544442
Q ss_pred Cc--cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhc
Q 048113 111 CL--ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS 161 (339)
Q Consensus 111 ~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs 161 (339)
.+ ..++.++.....+.+-++|+.. ....+++.|+..|+-|-
T Consensus 403 sna~~eREkFG~~~VfESiaQLLkkE----------aGl~VqKealhLLfLLL 445 (652)
T PLN03205 403 TDAYTARESFVSKEVFESISLLLRKE----------GGLHVRKEAIHLFYLLL 445 (652)
T ss_pred cchhHHHHHhcchHHHHHHHHHHHHh----------ccchhhHHHHHHHHHHH
Confidence 22 2377787888899999999885 56677787777766543
No 366
>PLN03205 ATR interacting protein; Provisional
Probab=23.27 E-value=3e+02 Score=25.89 Aligned_cols=110 Identities=11% Similarity=0.102 Sum_probs=68.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHh--cCChHHHHHHhc-----cCCHHHHHHHHHHHHHhcc--CC
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVE--RGIIAPLISMLC-----SQDYEAIEAALLSLLSLAC--GS 70 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~--~g~i~~Lv~lL~-----~~~~~~~~~A~~~L~~Ls~--~~ 70 (339)
|.|..+=.-++..+.-.+++.|..+..+ ++..|.. .--+..|.+++. +....++..|+.++..+.. +.
T Consensus 326 EaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmssna 405 (652)
T PLN03205 326 EPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMSTDA 405 (652)
T ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhccch
Confidence 3444444566777777888888777766 4444432 223334444332 2234566667766655444 22
Q ss_pred cchhhHHhhcCChHHHHHhhcCC-ChhHHHHHHHHHHHHhcCc
Q 048113 71 ERNKIRIVKSGIVPVLLEVLQCQ-STTLIELTVAAMLILSSCL 112 (339)
Q Consensus 71 ~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~ 112 (339)
...|+.|...-+.+.+-++|+.+ .-.++..++..|+-|...+
T Consensus 406 ~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCp 448 (652)
T PLN03205 406 YTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCP 448 (652)
T ss_pred hHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCc
Confidence 23477787778888888898876 4568888888887776543
No 367
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=22.03 E-value=5.9e+02 Score=22.98 Aligned_cols=178 Identities=16% Similarity=0.153 Sum_probs=97.4
Q ss_pred hHHHHhcchHHHHHHHhcCCCCCCC-----Ccc--------CCCCHHHHHHHHHHHHhhcCCCCChHHH-----------
Q 048113 115 KLEIASSGAIQRLVEILNGDLADDD-----NSY--------GRISVQAKIDAIATLHNLSTCHQLISPI----------- 170 (339)
Q Consensus 115 ~~~i~~~g~i~~Lv~ll~~~~~~~~-----~~~--------~~~~~~~~~~a~~~L~nLs~~~~~~~~i----------- 170 (339)
+..+++.|.||.|-++++.- .|.. +.. -+.+...+..-++.+.++|..+.++..+
T Consensus 2 q~~l~~~~li~~L~~~fd~l-~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~ 80 (303)
T PF12463_consen 2 QTRLAELGLIPTLNDMFDKL-IWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVES 80 (303)
T ss_pred hHHHHHcCCHhHHHHHHHhc-cCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccc
Confidence 35677889999998888652 1211 100 1334457778889999988744322211
Q ss_pred -----------HhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHh-hhHHHHhhCCcHHHHHHHhhcC---ChHH
Q 048113 171 -----------VSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSED-ALQEIAATCGAIRALVETIEEG---SPQC 235 (339)
Q Consensus 171 -----------~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~-~~~~i~~~~g~i~~Lv~lL~~~---~~~~ 235 (339)
.+.|.+..+++.+...+.+...+---..++-..+-..+. ..+.+..+.|.++.+++-+-++ +..+
T Consensus 81 ~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v 160 (303)
T PF12463_consen 81 ELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEV 160 (303)
T ss_pred cccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHH
Confidence 123778888888876533344443333444423334333 2333444489999999966543 2456
Q ss_pred HHHHHHHHHHhhccCchhHHHH--HHhcCChHHHHHhhhcC--CHHHH-HHHHHHHHHHhccC
Q 048113 236 KEHAVAILLLICKSCRDKYRSS--ILKEGVMPGLLQLSVDG--TWRAK-NMARDLLLLLRDCS 293 (339)
Q Consensus 236 ~~~a~~~L~~l~~~~~~~~~~~--~~~~g~i~~L~~ll~~~--~~~~~-~~A~~~L~~l~~~~ 293 (339)
.+..--.|..|...+....+.- .+.......+++.+... ++.+- +...-.+..+....
T Consensus 161 ~Q~~FDLLGELiK~n~~~f~~l~~~l~~~kF~~fl~~v~~nlVDSNvfiRsi~Ls~~~f~~~~ 223 (303)
T PF12463_consen 161 LQSNFDLLGELIKFNRDAFQRLNKYLNNDKFQRFLEVVSDNLVDSNVFIRSIVLSLDHFKNEN 223 (303)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcC
Confidence 7777888888887765422211 11112444455544332 33332 33333455555544
No 368
>PF14515 HOASN: Haem-oxygenase-associated N-terminal helices; PDB: 3BJD_B.
Probab=21.37 E-value=3e+02 Score=19.23 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHHHHh
Q 048113 279 KNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIAKL 336 (339)
Q Consensus 279 ~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v~~~ 336 (339)
...|+..|..+...+- .++...-....+++..+.+.+|+.....+|-+++-|++.
T Consensus 35 i~~A~~al~A~t~kgL---~GD~~AYA~YQ~LL~~L~~~~D~~T~~TRRW~A~~iYrV 89 (93)
T PF14515_consen 35 ITSAASALAALTEKGL---QGDRQAYAAYQQLLYELSLSDDVPTAPTRRWMASAIYRV 89 (93)
T ss_dssp HHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHH---GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc---CCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHh
Confidence 3556666666654332 344445566778888888888888888999999998874
No 369
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=20.39 E-value=6.5e+02 Score=22.83 Aligned_cols=37 Identities=11% Similarity=0.189 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhcCccchHHHHhcchHHHHHH-HhcC
Q 048113 97 LIELTVAAMLILSSCLENKLEIASSGAIQRLVE-ILNG 133 (339)
Q Consensus 97 ~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~-ll~~ 133 (339)
+|..|+..+......-.+.-.-.+......+.+ +|+.
T Consensus 303 lRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~ 340 (450)
T COG5095 303 LRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDR 340 (450)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhc
Confidence 677777777655432222222223444566665 4444
No 370
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=20.05 E-value=4e+02 Score=25.96 Aligned_cols=98 Identities=13% Similarity=0.108 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHH---HHhccCCcchhh----HHhhcCChHHHHH----hhcCCChhHHHHHHHHHHHHhcCccchHHH-H
Q 048113 52 DYEAIEAALLSL---LSLACGSERNKI----RIVKSGIVPVLLE----VLQCQSTTLIELTVAAMLILSSCLENKLEI-A 119 (339)
Q Consensus 52 ~~~~~~~A~~~L---~~Ls~~~~~~~~----~i~~~g~i~~Lv~----lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i-~ 119 (339)
+..++..++..+ .....+.+.... .++..|+.|.+-. -..+.+...+..+..+|+.|+...+. .+ .
T Consensus 334 ~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~--l~~~ 411 (501)
T PF13001_consen 334 NSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPS--LFSK 411 (501)
T ss_pred ccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcc--cccc
Confidence 456666666665 443333333222 2333455555410 11223567899999999999975542 22 2
Q ss_pred hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113 120 SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST 162 (339)
Q Consensus 120 ~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~ 162 (339)
+-+.+..|.+-|.. +.++++...-.+|..|+.
T Consensus 412 d~~li~~LF~sL~~-----------~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 412 DLSLIEFLFDSLED-----------ESPEVRVSIQEALSSLAP 443 (501)
T ss_pred cHHHHHHHHHHhhC-----------cchHHHHHHHHHHHHHHH
Confidence 45678888887755 678888877777777643
Done!