Query 048113
Match_columns 339
No_of_seqs 186 out of 1716
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 10:47:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048113.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048113hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xm9_A Plakophilin 1; armadill 100.0 6.8E-36 2.3E-40 283.3 26.4 304 3-315 5-381 (457)
2 3nmw_A APC variant protein; AR 100.0 3.3E-36 1.1E-40 274.7 22.4 268 14-294 46-337 (354)
3 3l6x_A Catenin delta-1; cateni 100.0 3.2E-35 1.1E-39 281.9 26.8 325 3-333 51-431 (584)
4 3ul1_B Importin subunit alpha- 100.0 9.3E-35 3.2E-39 279.3 28.2 328 3-334 60-430 (510)
5 3nmz_A APC variant protein; pr 100.0 1.2E-34 4.3E-39 271.9 22.5 265 17-294 165-453 (458)
6 3tpo_A Importin subunit alpha- 100.0 2.1E-33 7.2E-38 271.1 30.3 328 3-334 79-449 (529)
7 3nmz_A APC variant protein; pr 100.0 1.6E-33 5.5E-38 264.4 23.5 315 3-334 73-450 (458)
8 3now_A UNC-45 protein, SD10334 100.0 1.4E-32 4.8E-37 271.9 25.8 315 3-334 424-782 (810)
9 3ul1_B Importin subunit alpha- 100.0 5.5E-32 1.9E-36 260.0 29.2 314 3-331 103-475 (510)
10 3now_A UNC-45 protein, SD10334 100.0 2.2E-32 7.6E-37 270.4 25.0 314 3-333 380-736 (810)
11 3tpo_A Importin subunit alpha- 100.0 1.6E-31 5.5E-36 257.9 30.1 315 3-331 122-494 (529)
12 4b8j_A Importin subunit alpha- 100.0 4.8E-31 1.6E-35 254.5 31.7 317 3-334 120-443 (528)
13 4b8j_A Importin subunit alpha- 100.0 1.4E-30 4.7E-35 251.3 32.7 316 3-334 77-400 (528)
14 1xm9_A Plakophilin 1; armadill 100.0 1.5E-31 5.2E-36 253.4 23.9 317 3-332 47-447 (457)
15 1wa5_B Importin alpha subunit; 100.0 3.3E-30 1.1E-34 248.8 32.4 317 3-334 133-457 (530)
16 3l6x_A Catenin delta-1; cateni 100.0 1.4E-30 4.9E-35 249.8 25.5 317 3-333 93-475 (584)
17 1wa5_B Importin alpha subunit; 100.0 1.5E-29 5E-34 244.3 32.0 316 3-334 90-412 (530)
18 2jdq_A Importin alpha-1 subuni 100.0 1.9E-29 6.4E-34 237.9 31.3 316 3-334 67-390 (450)
19 3nmw_A APC variant protein; AR 100.0 7.5E-31 2.6E-35 239.4 17.9 243 3-256 76-342 (354)
20 4hxt_A De novo protein OR329; 100.0 2.1E-29 7.2E-34 219.1 25.3 240 39-294 2-244 (252)
21 4db8_A Armadillo-repeat protei 100.0 1.7E-29 5.7E-34 220.4 22.9 232 3-248 15-251 (252)
22 2jdq_A Importin alpha-1 subuni 100.0 4.9E-28 1.7E-32 228.1 33.1 315 3-334 23-347 (450)
23 1jdh_A Beta-catenin; beta-cate 100.0 2.5E-29 8.6E-34 241.9 24.6 310 3-332 20-337 (529)
24 1jdh_A Beta-catenin; beta-cate 100.0 8.8E-29 3E-33 238.1 28.3 300 3-316 62-408 (529)
25 4hxt_A De novo protein OR329; 100.0 1.7E-28 5.9E-33 213.3 24.2 236 3-252 5-245 (252)
26 4db8_A Armadillo-repeat protei 100.0 5.8E-29 2E-33 216.9 20.8 238 38-291 11-251 (252)
27 2z6h_A Catenin beta-1, beta-ca 100.0 1.3E-28 4.3E-33 243.1 24.9 311 3-333 17-335 (644)
28 2z6h_A Catenin beta-1, beta-ca 100.0 5.2E-28 1.8E-32 238.7 29.2 300 3-315 59-404 (644)
29 2z6g_A B-catenin; FULL-length, 100.0 2.4E-27 8.1E-32 238.3 23.2 310 3-332 153-470 (780)
30 2z6g_A B-catenin; FULL-length, 100.0 3.6E-26 1.2E-30 229.7 28.8 300 3-315 195-540 (780)
31 3tt9_A Plakophilin-2; cell adh 99.9 3.8E-27 1.3E-31 201.3 16.0 199 39-249 8-230 (233)
32 3tt9_A Plakophilin-2; cell adh 99.9 7.7E-27 2.6E-31 199.4 17.9 202 3-206 11-229 (233)
33 4db6_A Armadillo repeat protei 99.9 4.7E-25 1.6E-29 186.9 20.7 199 36-248 9-209 (210)
34 4db6_A Armadillo repeat protei 99.9 3.2E-24 1.1E-28 181.7 22.2 198 79-291 10-209 (210)
35 3opb_A SWI5-dependent HO expre 99.9 6.2E-24 2.1E-28 206.9 23.6 317 3-334 337-728 (778)
36 3opb_A SWI5-dependent HO expre 99.9 1.3E-22 4.4E-27 197.6 24.4 256 31-291 449-728 (778)
37 1xqr_A HSPBP1 protein; armadil 99.9 2.2E-22 7.4E-27 178.9 20.2 221 14-247 54-286 (296)
38 1xqr_A HSPBP1 protein; armadil 99.9 4.5E-22 1.6E-26 176.8 21.1 184 53-250 54-240 (296)
39 3grl_A General vesicular trans 99.7 5.7E-16 2E-20 147.5 24.7 316 3-333 24-393 (651)
40 3grl_A General vesicular trans 99.6 1.5E-13 5.1E-18 131.0 22.3 278 38-334 20-342 (651)
41 1oyz_A Hypothetical protein YI 99.5 1.6E-12 5.6E-17 114.4 20.8 224 3-291 26-250 (280)
42 4fdd_A Transportin-1; heat rep 99.5 1.8E-12 6.2E-17 131.6 21.9 312 3-336 131-473 (852)
43 3ltm_A Alpha-REP4; protein eng 99.5 8E-12 2.7E-16 105.2 19.7 190 37-294 17-206 (211)
44 3ltj_A Alpharep-4; protein eng 99.5 7.3E-12 2.5E-16 104.6 18.9 182 2-247 16-197 (201)
45 3ltm_A Alpha-REP4; protein eng 99.4 6E-12 2.1E-16 106.0 18.1 184 3-250 22-205 (211)
46 1oyz_A Hypothetical protein YI 99.4 2.9E-11 9.8E-16 106.4 22.7 199 36-290 20-220 (280)
47 1b3u_A Protein (protein phosph 99.4 8.2E-12 2.8E-16 120.9 20.8 301 3-335 167-471 (588)
48 3ltj_A Alpharep-4; protein eng 99.4 2.3E-11 7.8E-16 101.6 19.4 186 38-291 13-198 (201)
49 1b3u_A Protein (protein phosph 99.4 1.8E-11 6.1E-16 118.5 19.1 259 7-291 94-353 (588)
50 4fdd_A Transportin-1; heat rep 99.3 8E-11 2.7E-15 119.5 22.0 266 4-291 219-512 (852)
51 2vgl_B AP-2 complex subunit be 99.3 3.1E-11 1.1E-15 117.6 14.9 181 3-202 124-308 (591)
52 2bpt_A Importin beta-1 subunit 99.3 2E-10 6.7E-15 116.3 19.5 314 4-336 373-713 (861)
53 1ibr_B P95, importin beta-1 su 99.3 1.1E-10 3.7E-15 109.6 15.8 272 3-293 131-439 (462)
54 1qgr_A Protein (importin beta 99.2 3.9E-09 1.3E-13 107.0 25.5 315 3-336 131-481 (876)
55 4gmo_A Putative uncharacterize 99.2 3.6E-10 1.2E-14 111.9 15.4 208 38-247 33-257 (684)
56 4gmo_A Putative uncharacterize 99.2 2.7E-10 9.2E-15 112.7 13.8 197 81-290 34-257 (684)
57 1w63_A Adapter-related protein 99.1 4.5E-09 1.5E-13 102.8 21.9 261 5-293 112-381 (618)
58 1w63_A Adapter-related protein 99.1 6E-09 2E-13 102.0 22.3 292 2-333 144-450 (618)
59 1qgr_A Protein (importin beta 99.1 1.7E-09 6E-14 109.6 19.0 315 4-336 370-724 (876)
60 1ibr_B P95, importin beta-1 su 99.1 3.1E-09 1.1E-13 99.6 19.2 310 4-336 94-439 (462)
61 2bpt_A Importin beta-1 subunit 99.1 2.9E-09 1E-13 107.7 20.3 303 13-336 344-670 (861)
62 2vgl_B AP-2 complex subunit be 99.1 1.1E-08 3.8E-13 99.6 22.7 254 5-291 54-311 (591)
63 1u6g_C TIP120 protein, CAND1; 98.9 3.3E-08 1.1E-12 104.1 15.9 227 4-252 52-288 (1230)
64 2vgl_A Adaptor protein complex 98.8 1.3E-06 4.3E-11 85.4 24.9 264 5-292 116-399 (621)
65 2vgl_A Adaptor protein complex 98.8 9.3E-07 3.2E-11 86.4 22.6 262 2-291 148-433 (621)
66 2qk2_A LP04448P; mini spindles 98.6 2.7E-07 9.1E-12 79.2 11.9 174 3-201 18-201 (242)
67 1u6g_C TIP120 protein, CAND1; 98.6 5.3E-07 1.8E-11 95.0 15.2 272 41-336 8-286 (1230)
68 2qk2_A LP04448P; mini spindles 98.5 9.3E-07 3.2E-11 75.7 12.4 186 42-249 18-206 (242)
69 1ho8_A Vacuolar ATP synthase s 98.5 5.4E-06 1.8E-10 76.6 17.7 236 43-291 171-476 (480)
70 3b2a_A TON_1937, putative unch 98.5 1.5E-05 5E-10 66.4 18.4 180 4-206 37-219 (265)
71 3b2a_A TON_1937, putative unch 98.4 1.8E-05 6.3E-10 65.8 16.9 225 38-289 32-259 (265)
72 1te4_A Conserved protein MTH18 98.4 3.8E-08 1.3E-12 76.1 0.6 117 3-160 15-131 (131)
73 4ady_A RPN2, 26S proteasome re 98.3 0.00023 7.9E-09 71.4 25.6 235 11-292 406-677 (963)
74 2qk1_A Protein STU2; STU2P, XM 98.3 4.8E-06 1.6E-10 71.7 10.9 186 2-201 18-216 (249)
75 1ho8_A Vacuolar ATP synthase s 98.2 2.9E-05 9.9E-10 71.8 14.5 232 5-248 172-476 (480)
76 2qk1_A Protein STU2; STU2P, XM 98.2 4.9E-05 1.7E-09 65.3 14.7 191 43-249 20-221 (249)
77 1te4_A Conserved protein MTH18 98.2 3.2E-07 1.1E-11 70.8 0.8 120 37-201 10-129 (131)
78 4ady_A RPN2, 26S proteasome re 98.1 0.00019 6.6E-09 71.9 20.2 200 14-252 451-680 (963)
79 3tjz_B Coatomer subunit gamma; 98.1 2.8E-05 9.6E-10 70.0 12.7 244 6-293 74-318 (355)
80 3dad_A FH1/FH2 domain-containi 98.1 0.00014 4.9E-09 64.0 16.7 182 4-194 122-325 (339)
81 2iw3_A Elongation factor 3A; a 98.1 0.0002 6.8E-09 72.5 19.5 296 5-335 19-325 (986)
82 3dad_A FH1/FH2 domain-containi 98.1 0.0002 6.9E-09 63.1 16.8 184 42-237 121-325 (339)
83 2db0_A 253AA long hypothetical 98.0 0.001 3.6E-08 53.2 18.2 215 36-290 29-245 (253)
84 3tjz_B Coatomer subunit gamma; 97.9 9.5E-05 3.2E-09 66.6 12.2 236 5-285 109-347 (355)
85 2db0_A 253AA long hypothetical 97.8 0.0045 1.5E-07 49.6 17.7 181 81-294 32-213 (253)
86 2iw3_A Elongation factor 3A; a 97.7 0.0027 9.1E-08 64.4 20.0 245 18-291 70-324 (986)
87 1wa5_C Importin alpha RE-expor 97.4 0.0026 9E-08 65.2 15.7 254 15-290 376-669 (960)
88 3oc3_A Helicase MOT1, MOT1; re 97.4 0.00085 2.9E-08 62.9 10.6 239 3-287 177-432 (800)
89 4ffb_C Protein STU2; tubulin f 97.2 0.011 3.7E-07 51.3 15.2 178 5-201 14-208 (278)
90 3ebb_A Phospholipase A2-activa 96.9 0.018 6.2E-07 50.5 13.1 178 5-195 108-296 (304)
91 2x19_B Importin-13; nuclear tr 96.8 0.21 7.3E-06 50.9 22.4 219 10-249 459-715 (963)
92 2fv2_A RCD1 required for cell 96.6 0.076 2.6E-06 44.8 14.4 190 13-216 14-234 (268)
93 3oc3_A Helicase MOT1, MOT1; re 96.6 0.018 6E-07 54.3 11.3 241 41-330 176-432 (800)
94 1wa5_C Importin alpha RE-expor 96.5 0.067 2.3E-06 54.7 16.2 220 11-247 416-669 (960)
95 2fv2_A RCD1 required for cell 96.3 0.15 5E-06 43.1 14.3 195 52-260 14-234 (268)
96 2f31_A Diaphanous protein homo 96.1 0.39 1.3E-05 40.3 16.1 171 3-186 3-210 (233)
97 2x19_B Importin-13; nuclear tr 96.1 1.4 4.7E-05 44.8 23.3 137 145-292 461-600 (963)
98 4hat_C Exportin-1; heat repeat 96.1 0.62 2.1E-05 47.9 20.5 142 12-164 465-620 (1023)
99 1upk_A MO25 protein; transfera 96.0 0.35 1.2E-05 42.6 15.8 207 75-294 72-286 (341)
100 3eg5_B Protein diaphanous homo 95.9 0.7 2.4E-05 41.8 18.1 171 3-186 69-276 (383)
101 2of3_A ZYG-9; multifunctional 95.8 0.1 3.4E-06 44.7 11.5 176 3-201 49-232 (266)
102 2x1g_F Cadmus; transport prote 95.8 1.8 6.3E-05 44.0 23.0 136 145-292 476-616 (971)
103 2of3_A ZYG-9; multifunctional 95.8 0.12 4.2E-06 44.2 11.9 132 8-161 95-235 (266)
104 2x1g_F Cadmus; transport prote 95.8 0.69 2.4E-05 47.2 19.6 259 12-293 518-816 (971)
105 4ffb_C Protein STU2; tubulin f 95.7 0.13 4.6E-06 44.2 12.2 141 5-162 60-212 (278)
106 1upk_A MO25 protein; transfera 95.7 1 3.5E-05 39.6 18.2 202 33-250 72-285 (341)
107 1lrv_A LRV, leucine-rich repea 95.7 0.012 4.1E-07 50.0 5.0 64 7-103 57-120 (244)
108 3ebb_A Phospholipase A2-activa 95.3 0.35 1.2E-05 42.3 13.2 184 41-239 105-297 (304)
109 3u0r_A Apoptosis inhibitor 5; 95.1 1.2 4.2E-05 41.1 16.6 175 50-257 39-215 (507)
110 2bnx_A Diaphanous protein homo 94.6 1.7 5.8E-05 39.4 16.4 175 3-192 7-219 (386)
111 3m1i_C Exportin-1; heat repeat 93.7 7.1 0.00024 40.1 21.4 233 40-291 345-618 (1049)
112 2f31_A Diaphanous protein homo 93.4 0.94 3.2E-05 37.9 11.3 146 168-315 38-208 (233)
113 3c2g_A SYS-1 protein; beta-cat 93.3 1.9 6.6E-05 38.2 13.1 129 63-202 266-400 (619)
114 3eg5_B Protein diaphanous homo 93.2 1.4 4.7E-05 39.9 12.9 147 167-315 103-274 (383)
115 3u0r_A Apoptosis inhibitor 5; 92.7 6.2 0.00021 36.5 18.8 119 92-243 39-158 (507)
116 3c2g_A SYS-1 protein; beta-cat 92.2 5.9 0.0002 35.1 15.1 159 157-321 266-454 (619)
117 4hat_C Exportin-1; heat repeat 91.8 1.9 6.4E-05 44.4 13.1 142 145-293 465-620 (1023)
118 3qml_C Protein SLS1, nucleotid 91.4 0.93 3.2E-05 39.3 8.7 141 6-160 28-187 (315)
119 1lrv_A LRV, leucine-rich repea 90.9 0.11 3.7E-06 44.1 2.4 62 43-104 126-193 (244)
120 3gjx_A Exportin-1; transport, 90.3 8.6 0.00029 39.7 16.2 214 5-249 33-276 (1073)
121 2bnx_A Diaphanous protein homo 89.7 4.2 0.00014 36.7 12.2 142 173-315 46-212 (386)
122 3ibv_A Exportin-T; karyopherin 89.3 9.6 0.00033 39.0 15.7 304 11-336 204-568 (980)
123 3ldz_A STAM-1, signal transduc 89.0 1.1 3.7E-05 34.3 6.6 73 219-291 42-114 (140)
124 1lsh_A Lipovitellin (LV-1N, LV 88.2 7.5 0.00026 40.1 14.2 157 12-206 407-576 (1056)
125 1x5b_A Signal transducing adap 87.0 1.9 6.6E-05 33.8 7.1 73 219-291 52-125 (163)
126 3qml_C Protein SLS1, nucleotid 87.0 14 0.00049 31.9 14.0 138 146-290 41-188 (315)
127 1mhq_A ADP-ribosylation factor 86.9 1.7 5.8E-05 33.5 6.6 73 219-291 38-116 (148)
128 3g2s_A C-terminal fragment of 86.6 2.1 7E-05 33.1 6.9 73 219-291 48-126 (149)
129 3l9t_A Putative uncharacterize 86.2 5.5 0.00019 33.2 9.6 137 8-172 79-218 (240)
130 1lsh_A Lipovitellin (LV-1N, LV 86.0 6.2 0.00021 40.7 12.1 127 4-165 444-579 (1056)
131 3a6p_A Exportin-5; exportin-5, 85.6 16 0.00056 38.2 15.2 211 12-250 25-278 (1204)
132 1juq_A ADP-ribosylation factor 85.2 2.1 7.2E-05 33.9 6.4 72 220-291 51-128 (171)
133 3gjx_A Exportin-1; transport, 84.5 40 0.0014 34.8 17.6 219 41-292 30-276 (1073)
134 3l9t_A Putative uncharacterize 81.6 22 0.00074 29.6 11.7 141 84-257 74-216 (240)
135 3ldz_A STAM-1, signal transduc 79.1 5.1 0.00017 30.4 6.4 65 4-68 46-114 (140)
136 3ibv_A Exportin-T; karyopherin 77.5 66 0.0023 32.8 21.6 211 12-250 20-262 (980)
137 1x5b_A Signal transducing adap 76.7 8.1 0.00028 30.2 7.0 65 4-68 56-125 (163)
138 3m1i_C Exportin-1; heat repeat 76.1 73 0.0025 32.6 24.7 181 6-206 54-264 (1049)
139 1mhq_A ADP-ribosylation factor 75.8 8.9 0.00031 29.4 6.9 65 4-68 42-116 (148)
140 3g2s_A C-terminal fragment of 75.0 10 0.00035 29.1 7.0 65 4-68 52-126 (149)
141 3zyq_A Hepatocyte growth facto 74.6 5.8 0.0002 32.8 6.0 72 220-291 46-118 (226)
142 1juq_A ADP-ribosylation factor 72.9 12 0.0004 29.5 7.1 66 4-69 54-129 (171)
143 1dvp_A HRS, hepatocyte growth 71.4 8.5 0.00029 31.6 6.3 72 220-291 43-115 (220)
144 3gae_A Protein DOA1; UFD3, CDC 71.3 13 0.00045 31.2 7.5 137 56-205 71-217 (253)
145 1elk_A Target of MYB1; superhe 70.4 12 0.0004 29.0 6.5 72 220-291 54-130 (157)
146 3zyq_A Hepatocyte growth facto 66.6 13 0.00045 30.7 6.4 65 4-68 49-118 (226)
147 3a6p_A Exportin-5; exportin-5, 62.3 1.5E+02 0.0053 30.8 22.2 288 10-314 57-401 (1204)
148 1dvp_A HRS, hepatocyte growth 61.8 18 0.00062 29.6 6.4 65 4-68 46-115 (220)
149 1vdy_A Hypothetical protein (R 61.0 20 0.00069 27.1 5.9 74 220-293 50-132 (140)
150 3o2t_A Symplekin; heat repeat, 59.4 99 0.0034 27.7 14.1 180 3-201 25-252 (386)
151 3gae_A Protein DOA1; UFD3, CDC 57.3 11 0.00038 31.7 4.4 110 49-164 100-219 (253)
152 1vdy_A Hypothetical protein (R 54.1 14 0.00048 28.0 4.0 32 263-294 50-81 (140)
153 4atg_A TAF6; transcription, TF 54.0 46 0.0016 26.7 7.3 113 40-162 41-162 (196)
154 1elk_A Target of MYB1; superhe 52.9 25 0.00084 27.1 5.4 69 263-331 54-127 (157)
155 3o2t_A Symplekin; heat repeat, 52.6 1.3E+02 0.0044 26.9 10.9 112 218-336 62-185 (386)
156 3pst_A Protein DOA1; protein d 46.5 33 0.0011 31.1 5.9 108 50-163 273-390 (425)
157 3l3f_X Protein DOA1, DOA1/UFD3 42.9 31 0.0011 30.6 5.1 108 49-162 209-326 (362)
158 3gs3_A Symplekin, LD45768P; he 41.0 1.6E+02 0.0054 24.6 16.1 140 3-160 15-171 (257)
159 3pst_A Protein DOA1; protein d 38.8 32 0.0011 31.2 4.6 100 10-112 272-391 (425)
160 3l3f_X Protein DOA1, DOA1/UFD3 35.5 21 0.00073 31.7 2.8 100 10-112 209-328 (362)
161 3rru_A TOM1L1 protein; structu 34.6 43 0.0015 25.6 4.1 73 219-291 53-130 (152)
162 4atg_A TAF6; transcription, TF 27.7 2E+02 0.0068 22.9 7.1 148 104-272 28-178 (196)
163 3gs3_A Symplekin, LD45768P; he 25.7 2.9E+02 0.0099 23.0 11.4 111 219-336 53-175 (257)
164 2oxl_A Hypothetical protein YM 20.6 1.6E+02 0.0054 18.8 4.2 17 305-321 28-44 (64)
No 1
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=6.8e-36 Score=283.27 Aligned_cols=304 Identities=17% Similarity=0.157 Sum_probs=252.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK 79 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~ 79 (339)
+.||.+|.+++++.|..|+++|++++.+ .+..+.+.|+||.|+.+|++++++++..|+++|.+|+.++++++..+++
T Consensus 5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~ 84 (457)
T 1xm9_A 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR 84 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5789999999999999999999999965 6879999999999999999999999999999999999977999999999
Q ss_pred cCChHHHHHhhc-CCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhc--------CCCCCCCCccCCCCHHHH
Q 048113 80 SGIVPVLLEVLQ-CQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILN--------GDLADDDNSYGRISVQAK 150 (339)
Q Consensus 80 ~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~--------~~~~~~~~~~~~~~~~~~ 150 (339)
.|++|.|+++|. ++++++++.|+++|+||+.++++|..|.+ |++|.|++++. ++. .......++.+.
T Consensus 85 ~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~---~~~~e~~~~~v~ 160 (457)
T 1xm9_A 85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNS---NMSREVVDPEVF 160 (457)
T ss_dssp TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC------------CCCHHHH
T ss_pred cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCcc---chhcccccHHHH
Confidence 999999999999 78899999999999999998888998999 99999999993 210 000001256777
Q ss_pred HHHHHHHHhhcCCCCChHHHHhc-CcHHHHHHHhhcc----ccCchHHHHHHHHHHHhhcCCH-----------------
Q 048113 151 IDAIATLHNLSTCHQLISPIVSS-GVTYCLLQLIHSS----EKSSGLTEKAIALLENIVSSSE----------------- 208 (339)
Q Consensus 151 ~~a~~~L~nLs~~~~~~~~i~~~-g~i~~Lv~ll~~~----~~~~~~~~~a~~~L~n~l~~~~----------------- 208 (339)
..|+++|+|||.+++++..+++. |+++.|+.+|+++ ..+.+.+++|+.+|. +++...
T Consensus 161 ~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~-nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLH-NLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHH-HHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHH-hcccchhccCcchhhhccccccc
Confidence 89999999999988889999998 9999999999862 124678899999999 565211
Q ss_pred ----------------------------------hhhHHHHhhCCcHHHHHHHhhcC-ChHHHHHHHHHHHHhhccCch-
Q 048113 209 ----------------------------------DALQEIAATCGAIRALVETIEEG-SPQCKEHAVAILLLICKSCRD- 252 (339)
Q Consensus 209 ----------------------------------~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~- 252 (339)
.+.+.+.+ .|+++.|+.+|.++ ++.+++.|+++|.|+|..+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~ 318 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYH-SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhC-cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence 11222333 57789999999864 689999999999999986533
Q ss_pred --hH-HHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH
Q 048113 253 --KY-RSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID 315 (339)
Q Consensus 253 --~~-~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 315 (339)
.. +..+.++|++|.|++++.++++.++..|+++|++|+.+.+ ....+..+++..++..+.
T Consensus 319 ~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~---~~~~i~~~~i~~Lv~lL~ 381 (457)
T 1xm9_A 319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL---LHRVMGNQVFPEVTRLLT 381 (457)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG---GHHHHHHHTHHHHHHTTT
T ss_pred hHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH---HHHHHHHhhhHHHHHhcc
Confidence 12 3334468999999999999999999999999999998654 455667788888887765
No 2
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=3.3e-36 Score=274.71 Aligned_cols=268 Identities=19% Similarity=0.188 Sum_probs=236.4
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhcc-----------CCHHHHHHHHHHHHHhccCCcchhhHHhhc
Q 048113 14 RETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCS-----------QDYEAIEAALLSLLSLACGSERNKIRIVKS 80 (339)
Q Consensus 14 ~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~ 80 (339)
...+..|+++|.+++.+ +|+.+.+.|+++.|+.+|.. .++.++.+|+++|.+|+.+++.++..+...
T Consensus 46 ~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 35667899999999986 99999999999999999953 246899999999999999766788888655
Q ss_pred -CChHHHHHhhcCCChhHHHHHHHHHHHHhcC--ccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113 81 -GIVPVLLEVLQCQSTTLIELTVAAMLILSSC--LENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL 157 (339)
Q Consensus 81 -g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L 157 (339)
|+||.|+.+|.++++++++.|+++|.||+.. +.+|..|.+.|+||.|+++|.+. .+..+++.|+.+|
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~----------~~~~~~~~A~~aL 195 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV----------KKESTLKSVLSAL 195 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHC----------CCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcC----------CCHHHHHHHHHHH
Confidence 5599999999999999999999999999974 46799999999999999975432 6889999999999
Q ss_pred HhhcC-CCCChHHHH-hcCcHHHHHHHhhccccCc--hHHHHHHHHHHHhhc----CCHhhhHHHHhhCCcHHHHHHHhh
Q 048113 158 HNLST-CHQLISPIV-SSGVTYCLLQLIHSSEKSS--GLTEKAIALLENIVS----SSEDALQEIAATCGAIRALVETIE 229 (339)
Q Consensus 158 ~nLs~-~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~--~~~~~a~~~L~n~l~----~~~~~~~~i~~~~g~i~~Lv~lL~ 229 (339)
+||+. +++++..++ ..|+++.|+++|.++.+.. ++++.|+++|. +++ .+++++..+.+ .|+++.|+++|+
T Consensus 196 ~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~-nLs~~~a~~~~~~~~i~~-~g~i~~Lv~lL~ 273 (354)
T 3nmw_A 196 WNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR-NVSSLIATNEDHRQILRE-NNCLQTLLQHLK 273 (354)
T ss_dssp HHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHT-TTHHHHHHHHTT
T ss_pred HHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHH-HHHhhccCCHHHHHHHHH-cCCHHHHHHHHc
Confidence 99998 668888888 6799999999998753221 58999999999 566 48899988887 899999999999
Q ss_pred cCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCC
Q 048113 230 EGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSS 294 (339)
Q Consensus 230 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 294 (339)
+++..+++.|+++|+|++..+ ++.++.+.+.|++|+|+++++++++.+++.|+++|.+|+.+.+
T Consensus 274 ~~~~~v~~~A~~aL~nLa~~~-~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 274 SHSLTIVSNACGTLWNLSARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp CSCHHHHHHHHHHHHHHTSSC-HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred CCChHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999999655 4478899999999999999999999999999999999998765
No 3
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=3.2e-35 Score=281.95 Aligned_cols=325 Identities=18% Similarity=0.199 Sum_probs=259.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC-CcchhhHHh
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACG-SERNKIRIV 78 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~~i~ 78 (339)
+.||.+|.+++++.+..|+++|.+++.+ +|..+.+.|+||.|+.+|+++++++++.|+++|.||+.+ ++++|..|+
T Consensus 51 ~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~ 130 (584)
T 3l6x_A 51 PEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIK 130 (584)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5789999999999999999999999963 999999999999999999999999999999999999995 589999999
Q ss_pred hcCChHHHHHhhcC-CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCC-CCCCC--C----ccCCCCHHHH
Q 048113 79 KSGIVPVLLEVLQC-QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGD-LADDD--N----SYGRISVQAK 150 (339)
Q Consensus 79 ~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~--~----~~~~~~~~~~ 150 (339)
+.|+||.|+.+|.+ .+.++++.++++|+||+.++++|..|++ ++++.|++++..+ +.|.. + ...+.+..++
T Consensus 131 ~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~ 209 (584)
T 3l6x_A 131 NCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209 (584)
T ss_dssp HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHH
T ss_pred HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHH
Confidence 99999999999997 5788999999999999999999999985 5799999987210 00000 0 0122468999
Q ss_pred HHHHHHHHhhcCCC-CChHHHHhc-CcHHHHHHHhhcc----ccCchHHHHHHHHHHHhhcCCHh---------------
Q 048113 151 IDAIATLHNLSTCH-QLISPIVSS-GVTYCLLQLIHSS----EKSSGLTEKAIALLENIVSSSED--------------- 209 (339)
Q Consensus 151 ~~a~~~L~nLs~~~-~~~~~i~~~-g~i~~Lv~ll~~~----~~~~~~~~~a~~~L~n~l~~~~~--------------- 209 (339)
.+|+++|.||+... +++..+++. |+++.|+.++++. ..+.+.+++|+++|. |++...+
T Consensus 210 ~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~-NLs~~~~~e~~~~~~~~~~~~~ 288 (584)
T 3l6x_A 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLR-NLSYQVHREIPQAERYQEAAPN 288 (584)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHH-HHHTTHHHHSTTCCC-------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHH-Hhhccccccccchhhhhhhccc
Confidence 99999999999865 569999987 7788999999752 235688999999999 5654421
Q ss_pred -----------hhHHHHhhCCcHHHHHHHhhc-CChHHHHHHHHHHHHhhccCch---hHHHHHHhcCChHHHHHhhhcC
Q 048113 210 -----------ALQEIAATCGAIRALVETIEE-GSPQCKEHAVAILLLICKSCRD---KYRSSILKEGVMPGLLQLSVDG 274 (339)
Q Consensus 210 -----------~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~~g~i~~L~~ll~~~ 274 (339)
+...+.+ .++++.|+.+|++ .++.+++.|+++|+|||..... ..+..+.+++++|.|++|+.++
T Consensus 289 ~~~~~~~~~~~Gve~L~~-~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~ 367 (584)
T 3l6x_A 289 VANNTGTSPARGYELLFQ-PEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE 367 (584)
T ss_dssp -------CCCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS
T ss_pred ccccccccCchhHHHHhc-ccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC
Confidence 1111122 3457788999974 5799999999999999976422 2344555689999999999999
Q ss_pred CHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcC--------cccchHHHHHHHHHH
Q 048113 275 TWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEG--------DTVAGTTLRLVEEMI 333 (339)
Q Consensus 275 ~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~~~a~~~l~~~v 333 (339)
++.+++.|+++|+||+.+.. .+..+..+++..+++.+.... +++...|-+.|.+++
T Consensus 368 ~~~v~~~A~~aL~nLs~~~~---~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~ 431 (584)
T 3l6x_A 368 HERVVKAASGALRNLAVDAR---NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVI 431 (584)
T ss_dssp CHHHHHHHHHHHHHHHTTCS---CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCChh---HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHh
Confidence 99999999999999999775 556678888888888875322 122334556665554
No 4
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=9.3e-35 Score=279.27 Aligned_cols=328 Identities=16% Similarity=0.227 Sum_probs=275.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCCcchhhHH
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCS-QDYEAIEAALLSLLSLACGSERNKIRI 77 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~~i 77 (339)
+.+|+.++|+|++.|..|+..++.+... -.+.+++.|+||+|+++|++ +++++|..|+++|.|++.++++++..+
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~v 139 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 139 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 5689999999999999999999997653 46789999999999999975 568999999999999999899999999
Q ss_pred hhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCC-----------------
Q 048113 78 VKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDD----------------- 139 (339)
Q Consensus 78 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~----------------- 139 (339)
++.|++|.|+.+|.++++++++.|+++|+||+.+. .++..+.+.|+++.|+.++..+.....
T Consensus 140 v~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 219 (510)
T 3ul1_B 140 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 219 (510)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999764 568889999999999999987532110
Q ss_pred --Cc-----------------cCCCCHHHHHHHHHHHHhhcCCCCC-hHHHHhcCcHHHHHHHhhccccCchHHHHHHHH
Q 048113 140 --NS-----------------YGRISVQAKIDAIATLHNLSTCHQL-ISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIAL 199 (339)
Q Consensus 140 --~~-----------------~~~~~~~~~~~a~~~L~nLs~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~ 199 (339)
.. ..+.+++++..|+++|++|+..++. ...+.+.|+++.|+.+|.+. +..++..++.+
T Consensus 220 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~al~a 297 (510)
T 3ul1_B 220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT--ELPIVTPALRA 297 (510)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS--CHHHHHHHHHH
T ss_pred cccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC--ChhhhhHHHHH
Confidence 00 4678889999999999999986654 45677889999999999985 57899999999
Q ss_pred HHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHH
Q 048113 200 LENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAK 279 (339)
Q Consensus 200 L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~ 279 (339)
|+|..+.++..+..+.+ .|+++.|+.+|+++++.+++.|+++|.|++..++ ..+..+.+.|++|.|+.++.+++..++
T Consensus 298 L~nl~~~~~~~~~~i~~-~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~-~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 375 (510)
T 3ul1_B 298 IGNIVTGTDEQTQKVID-AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ-DQIQQVVNHGLVPFLVGVLSKADFKTQ 375 (510)
T ss_dssp HHHHTTSCHHHHHHHHH-TTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHHhhcCCHHHHHHHhh-ccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcH-HHHHHHHhcCCHHHHHHHHcCCCHHHH
Confidence 99666667778888887 8999999999999999999999999999998764 478888999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHHH
Q 048113 280 NMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIA 334 (339)
Q Consensus 280 ~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v~ 334 (339)
..|+++|.+++..+...........++++.++..+...+.++...+...|.++..
T Consensus 376 ~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 376 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999876542222234456777777776655555666667776666653
No 5
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=271.93 Aligned_cols=265 Identities=19% Similarity=0.190 Sum_probs=233.8
Q ss_pred HHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhcc-----------CCHHHHHHHHHHHHHhccCCcchhhHHhhc-CC
Q 048113 17 QIQAANELGKLSRR--QKHKLVERGIIAPLISMLCS-----------QDYEAIEAALLSLLSLACGSERNKIRIVKS-GI 82 (339)
Q Consensus 17 ~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~-g~ 82 (339)
+..|+++|.|++.+ +|+.+.+.|++++|+.+|.. .++.++.+|+++|.||+.+++.++..+... |+
T Consensus 165 ~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 244 (458)
T 3nmz_A 165 ICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244 (458)
T ss_dssp THHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence 34999999999876 99999999999999999952 346789999999999999766688777655 56
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHHhcC--ccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhh
Q 048113 83 VPVLLEVLQCQSTTLIELTVAAMLILSSC--LENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNL 160 (339)
Q Consensus 83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nL 160 (339)
||.|+.+|.++++++++.|+++|.||+.. +.+|..|.+.|+++.|+++|... .+..+++.|+.+|+||
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s----------~~~~v~~~A~~aL~nL 314 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV----------KKESTLKSVLSALWNL 314 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTC----------CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcC----------CCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999974 46789999999999999986442 6889999999999999
Q ss_pred cC-CCCChHHHH-hcCcHHHHHHHhhccccCc--hHHHHHHHHHHHhhc----CCHhhhHHHHhhCCcHHHHHHHhhcCC
Q 048113 161 ST-CHQLISPIV-SSGVTYCLLQLIHSSEKSS--GLTEKAIALLENIVS----SSEDALQEIAATCGAIRALVETIEEGS 232 (339)
Q Consensus 161 s~-~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~--~~~~~a~~~L~n~l~----~~~~~~~~i~~~~g~i~~Lv~lL~~~~ 232 (339)
+. .++++..++ ..|+++.|+++|.++.+.. ++++.|+++|. +++ .+++++..+.+ .|+++.|+++|++++
T Consensus 315 s~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~-nLs~~~a~~~~~~~~i~~-~G~i~~Lv~LL~~~~ 392 (458)
T 3nmz_A 315 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR-NVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHS 392 (458)
T ss_dssp HHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHH-HHHHHHTTCHHHHHHHHH-TTHHHHHHHHSSCSC
T ss_pred ccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHH-HHHhcccCCHHHHHHHHH-cccHHHHHHHHcCCC
Confidence 98 778898888 6799999999998753221 48999999999 566 58899989887 899999999999999
Q ss_pred hHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCC
Q 048113 233 PQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSS 294 (339)
Q Consensus 233 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 294 (339)
..+++.|+++|+|++..+ ++.+..+.+.|++|+|++++.++++.+++.|+++|.+|+.+.+
T Consensus 393 ~~v~~~A~~aL~nLa~~~-~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 393 LTIVSNACGTLWNLSARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHHHHHHHHHHHSSC-HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred hHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999654 4578899999999999999999999999999999999998754
No 6
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=2.1e-33 Score=271.09 Aligned_cols=328 Identities=16% Similarity=0.227 Sum_probs=276.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCCcchhhHH
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCS-QDYEAIEAALLSLLSLACGSERNKIRI 77 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~~i 77 (339)
+.++..+.|+|++.+..|+..++++... ..+.+++.|+||.|+.+|+. ++++++..|+++|.+++.+++.++..+
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~v 158 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 158 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4578899999999999999999997653 56788999999999999964 579999999999999999888899999
Q ss_pred hhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcC-ccchHHHHhcchHHHHHHHhcCCCCCCC-----------------
Q 048113 78 VKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSC-LENKLEIASSGAIQRLVEILNGDLADDD----------------- 139 (339)
Q Consensus 78 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~----------------- 139 (339)
++.|++|.|+.+|.++++++++.|+++|+||+.+ +.++..+.+.|++++|+.++..+.....
T Consensus 159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 238 (529)
T 3tpo_A 159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 238 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999975 4678899999999999999976432110
Q ss_pred ---C----------------ccCCCCHHHHHHHHHHHHhhcCCCCC-hHHHHhcCcHHHHHHHhhccccCchHHHHHHHH
Q 048113 140 ---N----------------SYGRISVQAKIDAIATLHNLSTCHQL-ISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIAL 199 (339)
Q Consensus 140 ---~----------------~~~~~~~~~~~~a~~~L~nLs~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~ 199 (339)
. -..+.+++++..|+++|.+++..++. ...+++.|+++.|+.+|.+. +..++..++.+
T Consensus 239 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~a~~a 316 (529)
T 3tpo_A 239 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT--ELPIVTPALRA 316 (529)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS--CHHHHHHHHHH
T ss_pred cccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC--ChhHHHHHHHH
Confidence 0 04678889999999999999986644 56677889999999999875 57899999999
Q ss_pred HHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHH
Q 048113 200 LENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAK 279 (339)
Q Consensus 200 L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~ 279 (339)
|+|.++.++..+..+.+ .|+++.|+.+|.++++.++..|+++|.|++..++ ..+..+.+.|++|.|+.++.++++.++
T Consensus 317 L~nl~~~~~~~~~~i~~-~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~-~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 394 (529)
T 3tpo_A 317 IGNIVTGTDEQTQKVID-AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ-DQIQQVVNHGLVPFLVGVLSKADFKTQ 394 (529)
T ss_dssp HHHHTTSCHHHHHHHHH-TTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHHHHccchHHHHHHhh-cccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccH-HHHHHHHhcCcHHHHHHHhcCCCHHHH
Confidence 99665667778888887 8999999999999999999999999999998764 477888899999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHHH
Q 048113 280 NMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIA 334 (339)
Q Consensus 280 ~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v~ 334 (339)
..|+++|.+++.++...........++++.++..+...+.++...+...|.++..
T Consensus 395 ~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 395 KAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999876542212233456777777777655556666667777776653
No 7
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=264.40 Aligned_cols=315 Identities=19% Similarity=0.172 Sum_probs=254.1
Q ss_pred HHHHHHHcC------------CCHHHHHHHHHHHHHHHHH---HHHHHHhcCCh----------HHHHHHhccCC--HH-
Q 048113 3 EMLMDNLLN------------GERETQIQAANELGKLSRR---QKHKLVERGII----------APLISMLCSQD--YE- 54 (339)
Q Consensus 3 ~~Lv~~L~s------------~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i----------~~Lv~lL~~~~--~~- 54 (339)
+.||++|.. ++++.+.+|+++|.|++.+ ..+...+.|++ +.+++++.+.. .+
T Consensus 73 p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 152 (458)
T 3nmz_A 73 PLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQ 152 (458)
T ss_dssp HHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCC
T ss_pred HHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccccc
Confidence 578899985 3479999999999999987 44455556666 55666666542 12
Q ss_pred ----HHH-------HHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcC-----------CChhHHHHHHHHHHHHhcCc
Q 048113 55 ----AIE-------AALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQC-----------QSTTLIELTVAAMLILSSCL 112 (339)
Q Consensus 55 ----~~~-------~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~nLs~~~ 112 (339)
+++ +|+++|.|++. ++++|..|.+.|++++|+.+|.. .++.++..|+++|.||+..+
T Consensus 153 ~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~ 231 (458)
T 3nmz_A 153 DKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD 231 (458)
T ss_dssp CSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCC
Confidence 444 89999999999 69999999999999999999952 23678999999999999866
Q ss_pred c-chHHHHh-cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC--CCChHHHHhcCcHHHHHHHhhcccc
Q 048113 113 E-NKLEIAS-SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC--HQLISPIVSSGVTYCLLQLIHSSEK 188 (339)
Q Consensus 113 ~-~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~~~ 188 (339)
+ ++..+.. .|+||.|+++|++ ++++++..|+++|+||+.. ++++..+++.|+++.|+++|.+. .
T Consensus 232 ~~~k~~i~~~~GaIp~LV~LL~s-----------~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s-~ 299 (458)
T 3nmz_A 232 VANKATLCSMKGCMRALVAQLKS-----------ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV-K 299 (458)
T ss_dssp HHHHHHHHHCHHHHHHHHHGGGC-----------SCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTC-C
T ss_pred cccHHHHHHcCCcHHHHHHHHhC-----------CCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcC-C
Confidence 5 6777764 5669999999998 8999999999999999984 46889999999999999986543 2
Q ss_pred CchHHHHHHHHHHHhhcC-CHhhhHHHHhhCCcHHHHHHHhhcCCh----HHHHHHHHHHHHhhc---cCchhHHHHHHh
Q 048113 189 SSGLTEKAIALLENIVSS-SEDALQEIAATCGAIRALVETIEEGSP----QCKEHAVAILLLICK---SCRDKYRSSILK 260 (339)
Q Consensus 189 ~~~~~~~a~~~L~n~l~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~----~~~~~a~~~L~~l~~---~~~~~~~~~~~~ 260 (339)
+..+++.++.+|+ +++. +++++..++...|+++.|+++|.++++ .+++.|+++|+|++. .+ ++.++.+.+
T Consensus 300 ~~~v~~~A~~aL~-nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~-~~~~~~i~~ 377 (458)
T 3nmz_A 300 KESTLKSVLSALW-NLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN-EDHRQILRE 377 (458)
T ss_dssp SHHHHHHHHHHHH-HHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCC-HHHHHHHHH
Confidence 5788999999999 6777 788999998448999999999997654 489999999999996 33 458899999
Q ss_pred cCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhh-hhhhHHHHHHHHHHHhcCcccchHHHHHHHHHHH
Q 048113 261 EGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSK-QLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIA 334 (339)
Q Consensus 261 ~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v~ 334 (339)
.|++|.|++++++++..+++.|+++|.+|+...+. +.. ....++++.++..+....++++..|...|.++..
T Consensus 378 ~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~--~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 378 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK--DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp TTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHH--HHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHH--HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999964331 333 3445666766665544456668888888888764
No 8
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.4e-32 Score=271.89 Aligned_cols=315 Identities=14% Similarity=0.133 Sum_probs=264.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH--------------------------------HH---HHHHhcCChHHHHHH
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR--------------------------------QK---HKLVERGIIAPLISM 47 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~--------------------------------~~---~~i~~~g~i~~Lv~l 47 (339)
+.||.+|+++++..+..|+++|.|++.+ ++ +.+++.|++|.|+.+
T Consensus 424 p~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~L 503 (810)
T 3now_A 424 HALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCAL 503 (810)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHH
Confidence 5789999999999999999999999962 22 678899999999999
Q ss_pred hccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHH---HhcchH
Q 048113 48 LCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEI---ASSGAI 124 (339)
Q Consensus 48 L~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i---~~~g~i 124 (339)
|+++++.+++.|+++|.|++. ++++|..+++.|++|+|+.+|.++++..++.|+++|.||+...+....+ ...|++
T Consensus 504 L~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aI 582 (810)
T 3now_A 504 AKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVI 582 (810)
T ss_dssp HTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTH
T ss_pred HcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHH
Confidence 999999999999999999998 7889999999999999999999999999999999999998643322222 124699
Q ss_pred HHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHh
Q 048113 125 QRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENI 203 (339)
Q Consensus 125 ~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~ 203 (339)
|+|+++|.++ .+...+..|+++|.||+.. ++++..+++.|+++.|+.+|.+. +..++..|+.+++ +
T Consensus 583 ppLv~LL~~~----------~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~--~~~Vq~~A~~~L~-N 649 (810)
T 3now_A 583 RPLLNLLQQD----------CTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED--HLYLTRAAAQCLC-N 649 (810)
T ss_dssp HHHHHTTSTT----------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC--CTTHHHHHHHHHH-H
T ss_pred HHHHHHhCCC----------CcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHH-H
Confidence 9999999862 3556667899999999986 57889999999999999999875 5789999999999 7
Q ss_pred hcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHh-cCChHHHHHhhhcCCHHHHHHH
Q 048113 204 VSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILK-EGVMPGLLQLSVDGTWRAKNMA 282 (339)
Q Consensus 204 l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~A 282 (339)
++.+++.+..++...|+++.|+.++.+++..+++.|+++|++++..++. .++.+++ .|++|+|+.++.+++..++..|
T Consensus 650 La~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~-~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A 728 (810)
T 3now_A 650 LVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVK-CCEKILAIASWLDILHTLIANPSPAVQHRG 728 (810)
T ss_dssp HTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHH-HHHHHHTSTTHHHHHHHHHTCSSHHHHHHH
T ss_pred HhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHH-HHHHHHHHcCCHHHHHHHHCCCCHHHHHHH
Confidence 8888889888884369999999999999999999999999999985433 5677787 8999999999999999999999
Q ss_pred HHHHHHHhccCCCcchhhh-hhhHHHHHHHHHHHhc---CcccchHHHHHHHHHHH
Q 048113 283 RDLLLLLRDCSSFGSRSKQ-LKNELVEQIMQEIDAE---GDTVAGTTLRLVEEMIA 334 (339)
Q Consensus 283 ~~~L~~l~~~~~~~~~~~~-~~~~~~~~i~~~~~~~---~~~~~~~a~~~l~~~v~ 334 (339)
++++.|+..++.. +.+. ...++++.+...+... ..++.+.|...|..+++
T Consensus 729 ~~aL~NL~~~s~e--~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 729 IVIILNMINAGEE--IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp HHHHHHHHTTCHH--HHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHH--HHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 9999999875432 3333 3455555555444322 35567778888888865
No 9
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=5.5e-32 Score=259.97 Aligned_cols=314 Identities=16% Similarity=0.232 Sum_probs=254.4
Q ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113 3 EMLMDNLL-NGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV 78 (339)
Q Consensus 3 ~~Lv~~L~-s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~ 78 (339)
+.||.+|+ ++++.+|..|+++|.|++.+ ++..+++.|+||.|+.+|+++++++++.|+++|++++.+++..|..+.
T Consensus 103 p~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~ 182 (510)
T 3ul1_B 103 PKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVI 182 (510)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 57899997 56789999999999999875 888999999999999999999999999999999999997788899999
Q ss_pred hcCChHHHHHhhcCCC-----------------------------------------------hhHHHHHHHHHHHHhcC
Q 048113 79 KSGIVPVLLEVLQCQS-----------------------------------------------TTLIELTVAAMLILSSC 111 (339)
Q Consensus 79 ~~g~i~~Lv~lL~~~~-----------------------------------------------~~~~~~a~~~L~nLs~~ 111 (339)
+.|+++.|+.++.+++ ++++..|+++|.+|+..
T Consensus 183 ~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~ 262 (510)
T 3ul1_B 183 KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG 262 (510)
T ss_dssp HTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred HcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 9999998888875432 34455666666666654
Q ss_pred ccc-hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccC
Q 048113 112 LEN-KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKS 189 (339)
Q Consensus 112 ~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 189 (339)
+.. ...+.+.|+++.|++++.+ .+..++..++++|+|++. ++..+..+.+.|+++.|+.+|.++ +
T Consensus 263 ~~~~~~~i~~~g~i~~Lv~lL~~-----------~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~--~ 329 (510)
T 3ul1_B 263 PNERIEMVVKKGVVPQLVKLLGA-----------TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP--K 329 (510)
T ss_dssp CHHHHHHHHTTTCHHHHHHHHTC-----------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS--S
T ss_pred hhhhHHHHHhcccchhhhhhhcC-----------CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC--C
Confidence 433 4456677888888888888 799999999999999977 556778899999999999999875 5
Q ss_pred chHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHH
Q 048113 190 SGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQ 269 (339)
Q Consensus 190 ~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ 269 (339)
..++..|+++|+|..+..+..+..+.+ .|+++.|+.++++++..++..|+++|.|++.....+.+..+.+.|++++|+.
T Consensus 330 ~~v~~~A~~aL~nl~a~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~ 408 (510)
T 3ul1_B 330 TNIQKEATWTMSNITAGRQDQIQQVVN-HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 408 (510)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHh-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHH
Confidence 789999999999655566777777876 8999999999999999999999999999998765667788899999999999
Q ss_pred hhhcCCHHHHHHHHHHHHHHhccCCCcchhh----hh-hhHHHHHHHHHHH-hcCcccchHHHHHHHH
Q 048113 270 LSVDGTWRAKNMARDLLLLLRDCSSFGSRSK----QL-KNELVEQIMQEID-AEGDTVAGTTLRLVEE 331 (339)
Q Consensus 270 ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~----~~-~~~~~~~i~~~~~-~~~~~~~~~a~~~l~~ 331 (339)
++.+.++.++..++++|.++....+.....+ .+ ..+++.. +..+. -+++++..+|..++..
T Consensus 409 LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~-ie~Lq~~~n~~i~~~A~~iie~ 475 (510)
T 3ul1_B 409 LLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK-IEALQRHENESVYKASLNLIEK 475 (510)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHH-HHHGGGCSSHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHH-HHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999875432111111 12 2233433 33333 4567788888888754
No 10
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.2e-32 Score=270.44 Aligned_cols=314 Identities=16% Similarity=0.149 Sum_probs=262.5
Q ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHHHHH--HHHHHH-hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcc-----
Q 048113 3 EMLMDNLLNG--ERETQIQAANELGKLSRR--QKHKLV-ERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSER----- 72 (339)
Q Consensus 3 ~~Lv~~L~s~--~~~~~~~a~~~L~~l~~~--~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~----- 72 (339)
+.|+.+|.++ +++++..|+++|..++.+ .|..++ +.|++|.|+.+|+++++.++..|+++|.||+.+++.
T Consensus 380 ~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~ 459 (810)
T 3now_A 380 EACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLP 459 (810)
T ss_dssp HHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCC
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhH
Confidence 4578888887 899999999999999986 777766 589999999999999999999999999999985421
Q ss_pred ------------------------hh---hHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHH
Q 048113 73 ------------------------NK---IRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQ 125 (339)
Q Consensus 73 ------------------------~~---~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~ 125 (339)
++ +.++++|++|.|+.++.++++.+++.|+++|.|++.+++++..+.+.|++|
T Consensus 460 ~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip 539 (810)
T 3now_A 460 EMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVK 539 (810)
T ss_dssp SCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHH
T ss_pred HHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 22 678899999999999999999999999999999998888999999999999
Q ss_pred HHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHH---hcCcHHHHHHHhhccccCchHHHHHHHHHHH
Q 048113 126 RLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIV---SSGVTYCLLQLIHSSEKSSGLTEKAIALLEN 202 (339)
Q Consensus 126 ~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~---~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n 202 (339)
+|+.+|.+ +++..+..|+++|.||+.+.+....+. ..|++++|+.+|.++ .+...+..|+.+|.|
T Consensus 540 ~Lv~LL~s-----------~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~-~~~l~~~eAl~AL~N 607 (810)
T 3now_A 540 ALLRMALE-----------GTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQD-CTALENFESLMALTN 607 (810)
T ss_dssp HHHHHHHS-----------SCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTT-SCHHHHHHHHHHHHH
T ss_pred HHHHHHcc-----------CCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCC-CcHHHHHHHHHHHHH
Confidence 99999998 789999999999999987543333221 247999999999853 123335689999994
Q ss_pred hhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHh-cCChHHHHHhhhcCCHHHHHH
Q 048113 203 IVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILK-EGVMPGLLQLSVDGTWRAKNM 281 (339)
Q Consensus 203 ~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~ 281 (339)
+....++++..+++ .|+++.|++++.++++.+++.|+++|+|++.+ ++.+..+.+ .|.+|.|+.++.+.+..+|..
T Consensus 608 La~~~d~~~~~Ii~-aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~--~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~ 684 (810)
T 3now_A 608 LASMNESVRQRIIK-EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS--EDVIKMFEGNNDRVKFLALLCEDEDEETATA 684 (810)
T ss_dssp HTTSCHHHHHHHHH-TTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS--HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHH
T ss_pred HhcCCHHHHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--hHHHHHHHhccCcHHHHHHHhcCCCHHHHHH
Confidence 43444688888987 89999999999999999999999999999976 346777775 799999999999999999999
Q ss_pred HHHHHHHHhccCCCcchhh-hhh-hHHHHHHHHHHHhcCcccchHHHHHHHHHH
Q 048113 282 ARDLLLLLRDCSSFGSRSK-QLK-NELVEQIMQEIDAEGDTVAGTTLRLVEEMI 333 (339)
Q Consensus 282 A~~~L~~l~~~~~~~~~~~-~~~-~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v 333 (339)
|+++|.+|+.+++. +.+ .+. .+.++.++..+..+.++++..|...+.+++
T Consensus 685 Aa~ALanLt~~s~~--~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~ 736 (810)
T 3now_A 685 CAGALAIITSVSVK--CCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMI 736 (810)
T ss_dssp HHHHHHHHHHHCHH--HHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHH--HHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 99999999985331 333 344 578888887776666777888888887765
No 11
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.6e-31 Score=257.91 Aligned_cols=315 Identities=16% Similarity=0.221 Sum_probs=255.4
Q ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113 3 EMLMDNLL-NGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV 78 (339)
Q Consensus 3 ~~Lv~~L~-s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~ 78 (339)
+.||.+|. +.++..+..|+++|.+++.+ .+..+++.|+||.|+.+|.++++++++.|+++|++++.+++.+|..+.
T Consensus 122 p~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~ 201 (529)
T 3tpo_A 122 PKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVI 201 (529)
T ss_dssp HHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 57889996 56689999999999999975 778899999999999999999999999999999999998888999999
Q ss_pred hcCChHHHHHhhcCC-----------------------------------------------ChhHHHHHHHHHHHHhcC
Q 048113 79 KSGIVPVLLEVLQCQ-----------------------------------------------STTLIELTVAAMLILSSC 111 (339)
Q Consensus 79 ~~g~i~~Lv~lL~~~-----------------------------------------------~~~~~~~a~~~L~nLs~~ 111 (339)
+.|+++.|+.+|..+ +++++..|+++|.+++..
T Consensus 202 ~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~ 281 (529)
T 3tpo_A 202 KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG 281 (529)
T ss_dssp HTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS
T ss_pred HcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh
Confidence 999998888877532 234556667777777754
Q ss_pred ccc-hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccC
Q 048113 112 LEN-KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKS 189 (339)
Q Consensus 112 ~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 189 (339)
+.. ...+.+.|+++.|+.++.+ .+..++..++.+|+|++. ++..+..+.+.|+++.|+.+|.++ +
T Consensus 282 ~~~~~~~v~~~g~i~~Lv~lL~~-----------~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~--~ 348 (529)
T 3tpo_A 282 PNERIEMVVKKGVVPQLVKLLGA-----------TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP--K 348 (529)
T ss_dssp CHHHHHHHHTTTCHHHHHHHHTC-----------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS--S
T ss_pred hhhhHHHHHhccchHHHHHHhcC-----------CChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC--C
Confidence 433 4566788999999999998 799999999999999987 556778899999999999999875 5
Q ss_pred chHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHH
Q 048113 190 SGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQ 269 (339)
Q Consensus 190 ~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ 269 (339)
..++..|+++|+|..+..+..+..+.+ .|+++.|+.++.+++..++..|+++|.|++.....+.+..+.+.|++++|+.
T Consensus 349 ~~i~~~a~~aL~nl~~~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~ 427 (529)
T 3tpo_A 349 TNIQKEATWTMSNITAGRQDQIQQVVN-HGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 427 (529)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHh-cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHH
Confidence 789999999999655566777777776 8999999999999999999999999999998655667778899999999999
Q ss_pred hhhcCCHHHHHHHHHHHHHHhccCCCcchhhh----h-hhHHHHHHHHHHHhcCcccchHHHHHHHH
Q 048113 270 LSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQ----L-KNELVEQIMQEIDAEGDTVAGTTLRLVEE 331 (339)
Q Consensus 270 ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~----~-~~~~~~~i~~~~~~~~~~~~~~a~~~l~~ 331 (339)
++.+.++.+...++++|.++....+.....+. + ..++++.|-....-+.+++..+|..++..
T Consensus 428 LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~ 494 (529)
T 3tpo_A 428 LLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 494 (529)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999998754321101111 1 12333332221113457778888887754
No 12
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=4.8e-31 Score=254.49 Aligned_cols=317 Identities=15% Similarity=0.177 Sum_probs=269.9
Q ss_pred HHHHHHHcCCC-HHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113 3 EMLMDNLLNGE-RETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV 78 (339)
Q Consensus 3 ~~Lv~~L~s~~-~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~ 78 (339)
+.|+.+|.+++ +.++..|+++|.+++.+ ++..+.+.|+++.|+.+|.++++.++..|+++|++++.+++.++..+.
T Consensus 120 ~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~ 199 (528)
T 4b8j_A 120 PRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVL 199 (528)
T ss_dssp HHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence 57899999876 99999999999999984 888999999999999999999999999999999999997788899999
Q ss_pred hcCChHHHHHhh-cCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113 79 KSGIVPVLLEVL-QCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL 157 (339)
Q Consensus 79 ~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L 157 (339)
+.|+++.|+.+| .++++.++..++++|.+|+...+........++++.|+.++.+ .++.++..|+++|
T Consensus 200 ~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~-----------~~~~v~~~a~~aL 268 (528)
T 4b8j_A 200 ANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHS-----------NDEEVLTDACWAL 268 (528)
T ss_dssp HTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTC-----------CCHHHHHHHHHHH
T ss_pred HCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCC-----------CCHHHHHHHHHHH
Confidence 999999999999 5668999999999999999876555555668999999999988 7999999999999
Q ss_pred HhhcCCCCC-hHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC-ChHH
Q 048113 158 HNLSTCHQL-ISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEG-SPQC 235 (339)
Q Consensus 158 ~nLs~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~ 235 (339)
.+++..++. ...+++.|+++.|+.+|.++ +..++..|+.+|+|.....+..+..+.+ .|+++.|+.+|.++ ++.+
T Consensus 269 ~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v 345 (528)
T 4b8j_A 269 SYLSDGTNDKIQAVIEAGVCPRLVELLLHP--SPSVLIPALRTVGNIVTGDDAQTQCIID-HQALPCLLSLLTQNLKKSI 345 (528)
T ss_dssp HHHTSSCHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHHHSCCCHHH
T ss_pred HHHHcCCHHHHHHHHHcCHHHHHHHHHcCC--ChhHHHHHHHHHHHHHcCCHHHHHHHHH-hhhHHHHHHHHcCCCcHHH
Confidence 999986554 46778889999999999885 5789999999999544456777777886 89999999999998 8999
Q ss_pred HHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH
Q 048113 236 KEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID 315 (339)
Q Consensus 236 ~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 315 (339)
+..|+++|.+++..++ .....+.+.|++|.|+.++.++++.++..|+++|.+++..+...........+.++.++..+.
T Consensus 346 ~~~A~~~L~nl~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~ 424 (528)
T 4b8j_A 346 KKEACWTISNITAGNK-DQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLI 424 (528)
T ss_dssp HHHHHHHHHHHHTSCH-HHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHHHHHHHHCCCH-HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHc
Confidence 9999999999998653 467778889999999999999999999999999999988632111222234566777766665
Q ss_pred hcCcccchHHHHHHHHHHH
Q 048113 316 AEGDTVAGTTLRLVEEMIA 334 (339)
Q Consensus 316 ~~~~~~~~~a~~~l~~~v~ 334 (339)
...+++...|...|..++.
T Consensus 425 ~~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 425 CPDIRIVTVCLEGLENILK 443 (528)
T ss_dssp CSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 5556667777777777764
No 13
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.4e-30 Score=251.30 Aligned_cols=316 Identities=17% Similarity=0.202 Sum_probs=270.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhccCC-HHHHHHHHHHHHHhccCCcchhhHH
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCSQD-YEAIEAALLSLLSLACGSERNKIRI 77 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~A~~~L~~Ls~~~~~~~~~i 77 (339)
+.|+..|.+++++.+..|++.|++++.. ....+.+.|+++.|+.+|++++ +.++..|+++|.+++.++++++..+
T Consensus 77 ~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~ 156 (528)
T 4b8j_A 77 PAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVV 156 (528)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4688999999999999999999999764 5788899999999999999886 9999999999999999878999999
Q ss_pred hhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHH
Q 048113 78 VKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIAT 156 (339)
Q Consensus 78 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~ 156 (339)
++.|++|.|+.+|.++++.++..|+++|.|++.+. .++..+.+.|+++.|+.++... .++.++..++++
T Consensus 157 ~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~----------~~~~v~~~a~~~ 226 (528)
T 4b8j_A 157 IDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH----------TKLSMLRNATWT 226 (528)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT----------CCHHHHHHHHHH
T ss_pred HhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC----------CCHHHHHHHHHH
Confidence 99999999999999999999999999999999754 5688888999999999999543 789999999999
Q ss_pred HHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhh-hHHHHhhCCcHHHHHHHhhcCChHH
Q 048113 157 LHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDA-LQEIAATCGAIRALVETIEEGSPQC 235 (339)
Q Consensus 157 L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~ 235 (339)
|.+|+............|+++.|+.++.+. +..++..|+++|+ +++..+.. ...+.+ .|+++.|+.+|.++++.+
T Consensus 227 L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~aL~-~l~~~~~~~~~~~~~-~g~v~~Lv~lL~~~~~~v 302 (528)
T 4b8j_A 227 LSNFCRGKPQPSFEQTRPALPALARLIHSN--DEEVLTDACWALS-YLSDGTNDKIQAVIE-AGVCPRLVELLLHPSPSV 302 (528)
T ss_dssp HHHHHCSSSCCCHHHHTTHHHHHHHHTTCC--CHHHHHHHHHHHH-HHTSSCHHHHHHHHH-TTCHHHHHHHTTCSCHHH
T ss_pred HHHHHcCCCCCcHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHH-HHHcCCHHHHHHHHH-cCHHHHHHHHHcCCChhH
Confidence 999998765555666789999999999874 5789999999999 56655444 456665 899999999999999999
Q ss_pred HHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcC-CHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHH
Q 048113 236 KEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDG-TWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEI 314 (339)
Q Consensus 236 ~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 314 (339)
+..|+++|.+++..++ ..+..+.+.|++|.|+.++.++ ++.++..|+++|.+|+..... .....+..+.++.++..+
T Consensus 303 ~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~-~~~~~~~~~~i~~L~~lL 380 (528)
T 4b8j_A 303 LIPALRTVGNIVTGDD-AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD-QIQAVINAGIIGPLVNLL 380 (528)
T ss_dssp HHHHHHHHHHHTTSCH-HHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHH-HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHH-HHHHHHHCCCHHHHHHHH
Confidence 9999999999998654 4677888999999999999999 999999999999999875431 112334457777777777
Q ss_pred HhcCcccchHHHHHHHHHHH
Q 048113 315 DAEGDTVAGTTLRLVEEMIA 334 (339)
Q Consensus 315 ~~~~~~~~~~a~~~l~~~v~ 334 (339)
.....+++..|...|.++..
T Consensus 381 ~~~~~~v~~~a~~aL~nl~~ 400 (528)
T 4b8j_A 381 QTAEFDIKKEAAWAISNATS 400 (528)
T ss_dssp HHSCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHc
Confidence 55556777778877777654
No 14
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.5e-31 Score=253.40 Aligned_cols=317 Identities=17% Similarity=0.156 Sum_probs=252.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhc-cCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLC-SQDYEAIEAALLSLLSLACGSERNKIRIV 78 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~ 78 (339)
+.|+.+|.+++++.+..|+++|++++.+ ++..+.+.|+||.|+++|+ ++++++++.|+++|.+|+.+ +++|..++
T Consensus 47 ~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~ 125 (457)
T 1xm9_A 47 CKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELI 125 (457)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHH
Confidence 6799999999999999999999999963 9999999999999999999 88999999999999999995 88999999
Q ss_pred hcCChHHHHHhhc--------CC--------ChhHHHHHHHHHHHHhcCccchHHHHhc-chHHHHHHHhcCCCCCCCCc
Q 048113 79 KSGIVPVLLEVLQ--------CQ--------STTLIELTVAAMLILSSCLENKLEIASS-GAIQRLVEILNGDLADDDNS 141 (339)
Q Consensus 79 ~~g~i~~Lv~lL~--------~~--------~~~~~~~a~~~L~nLs~~~~~~~~i~~~-g~i~~Lv~ll~~~~~~~~~~ 141 (339)
+ |++|.|+.+|. ++ ++.+...|+++|.||+.+++++..+.+. |+++.|+.++++....
T Consensus 126 ~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~---- 200 (457)
T 1xm9_A 126 A-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA---- 200 (457)
T ss_dssp H-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHH----
T ss_pred h-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccc----
Confidence 9 99999999993 22 3456679999999999887788999987 9999999999851000
Q ss_pred cCCCCHHHHHHHHHHHHhhcCC---------------------------------------------------CCChHHH
Q 048113 142 YGRISVQAKIDAIATLHNLSTC---------------------------------------------------HQLISPI 170 (339)
Q Consensus 142 ~~~~~~~~~~~a~~~L~nLs~~---------------------------------------------------~~~~~~i 170 (339)
+..+...+++++.+|+||+.. ++..+.+
T Consensus 201 -~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 279 (457)
T 1xm9_A 201 -SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWL 279 (457)
T ss_dssp -TCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGG
T ss_pred -cCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHH
Confidence 002345778888889998631 2233456
Q ss_pred HhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCC-Hh----hhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHH
Q 048113 171 VSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSS-ED----ALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLL 245 (339)
Q Consensus 171 ~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~-~~----~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 245 (339)
.+.|+++.|+.+|.+.. ++.+++.|+++|. +++.. .. ..+.++.+.|++|.|+++|.+++..++..|+++|.|
T Consensus 280 ~~~~~l~~L~~lL~~~~-~~~~~e~a~~aL~-nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~n 357 (457)
T 1xm9_A 280 YHSDAIRTYLNLMGKSK-KDATLEACAGALQ-NLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSN 357 (457)
T ss_dssp GSHHHHHHHHHHHHHCC-CHHHHHHHHHHHH-HHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hCcchHHHHHHHHhhcC-CHHHHHHHHHHHH-HhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHH
Confidence 67789999999998763 5789999999999 45543 22 212344348999999999999999999999999999
Q ss_pred hhccCchhHHHHHHhcCChHHHHHhhhcCCH------HHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhc-C
Q 048113 246 ICKSCRDKYRSSILKEGVMPGLLQLSVDGTW------RAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAE-G 318 (339)
Q Consensus 246 l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~------~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~ 318 (339)
++.+. +.+.. +..|++|+|++++.++++ .+...++++|.++...... ........++++.++.....+ .
T Consensus 358 ls~~~--~~~~~-i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~-~~~~i~~~g~l~~L~~L~~~~~~ 433 (457)
T 1xm9_A 358 MSRHP--LLHRV-MGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ-LAKQYFSSSMLNNIINLCRSSAS 433 (457)
T ss_dssp HHTSG--GGHHH-HHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTH-HHHHHCCHHHHHHHHHHHHCTTC
T ss_pred HhcCH--HHHHH-HHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHcCCHHHHHHHHcCCCc
Confidence 99863 35554 456899999999998743 5778999999999765442 123345678888888887655 5
Q ss_pred cccchHHHHHHHHH
Q 048113 319 DTVAGTTLRLVEEM 332 (339)
Q Consensus 319 ~~~~~~a~~~l~~~ 332 (339)
+++..+|..+|.++
T Consensus 434 ~~i~~~A~~~L~~~ 447 (457)
T 1xm9_A 434 PKAAEAARLLLSDM 447 (457)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH
Confidence 77788888887654
No 15
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=3.3e-30 Score=248.78 Aligned_cols=317 Identities=15% Similarity=0.192 Sum_probs=269.2
Q ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113 3 EMLMDNLLNG-ERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV 78 (339)
Q Consensus 3 ~~Lv~~L~s~-~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~ 78 (339)
+.|+.+|.++ ++.++..|+++|.+++.+ .+..+.+.|+++.|+.+|++++++++..|+++|.+++.+++.++..+.
T Consensus 133 ~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~ 212 (530)
T 1wa5_B 133 PRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVL 212 (530)
T ss_dssp HHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHH
Confidence 5788889887 899999999999999984 778888999999999999999999999999999999997788999999
Q ss_pred hcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113 79 KSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL 157 (339)
Q Consensus 79 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L 157 (339)
..|+++.|+.++.++++.++..|+++|.+|+... +........++++.|+.++.+ .++.++..|+++|
T Consensus 213 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~-----------~d~~v~~~a~~~L 281 (530)
T 1wa5_B 213 QCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS-----------MDTETLVDACWAI 281 (530)
T ss_dssp HTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC-----------CCHHHHHHHHHHH
T ss_pred HcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcC-----------CCHHHHHHHHHHH
Confidence 9999999999999999999999999999999765 555556678999999999988 7899999999999
Q ss_pred HhhcCC-CCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHH
Q 048113 158 HNLSTC-HQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCK 236 (339)
Q Consensus 158 ~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 236 (339)
.+|+.. ++....+++.|+++.|+.+|.+. +..++..|+.+|+|.....+.....+.+ .|+++.|+.+|+++++.++
T Consensus 282 ~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~vr 358 (530)
T 1wa5_B 282 SYLSDGPQEAIQAVIDVRIPKRLVELLSHE--STLVQTPALRAVGNIVTGNDLQTQVVIN-AGVLPALRLLLSSPKENIK 358 (530)
T ss_dssp HHHHSSCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHH
T ss_pred HHHhCCCHHHHHHHHhcCcHHHHHHHHCCC--ChhhHHHHHHHHHHHHcCCHHHHHHHHH-cchHHHHHHHHcCCCHHHH
Confidence 999975 45677888899999999999874 5789999999999544456666777776 7999999999999999999
Q ss_pred HHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCC--cchhhhhhhHHHHHHHHHH
Q 048113 237 EHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSF--GSRSKQLKNELVEQIMQEI 314 (339)
Q Consensus 237 ~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~--~~~~~~~~~~~~~~i~~~~ 314 (339)
..|+++|.+++..++. ....+.+.|++|.|+.++.++++.++..|+++|.+++..... .........++++.++..+
T Consensus 359 ~~A~~aL~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll 437 (530)
T 1wa5_B 359 KEACWTISNITAGNTE-QIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL 437 (530)
T ss_dssp HHHHHHHHHHTTSCHH-HHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999986543 566778899999999999999999999999999999875421 1122233456677766665
Q ss_pred HhcCcccchHHHHHHHHHHH
Q 048113 315 DAEGDTVAGTTLRLVEEMIA 334 (339)
Q Consensus 315 ~~~~~~~~~~a~~~l~~~v~ 334 (339)
.....+++..|...|..++.
T Consensus 438 ~~~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 438 EIADNRIIEVTLDALENILK 457 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHH
Confidence 44456667777777777664
No 16
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=1.4e-30 Score=249.76 Aligned_cols=317 Identities=13% Similarity=0.155 Sum_probs=250.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHH---H-HHHHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCCcchhhHH
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSR---R-QKHKLVERGIIAPLISMLCS-QDYEAIEAALLSLLSLACGSERNKIRI 77 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~---~-~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~~i 77 (339)
+.||.+|.+++++++..|+++|++++. . +|..+.+.|+|+.|+.+|++ .+.++++.|+.+|++|+. +++++..|
T Consensus 93 p~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I 171 (584)
T 3l6x_A 93 PVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEI 171 (584)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHH
Confidence 679999999999999999999999996 4 99999999999999999997 588999999999999999 79999999
Q ss_pred hhcCChHHHHHhhc------------------CCChhHHHHHHHHHHHHhcCcc-chHHHHhc-chHHHHHHHhcCCCCC
Q 048113 78 VKSGIVPVLLEVLQ------------------CQSTTLIELTVAAMLILSSCLE-NKLEIASS-GAIQRLVEILNGDLAD 137 (339)
Q Consensus 78 ~~~g~i~~Lv~lL~------------------~~~~~~~~~a~~~L~nLs~~~~-~~~~i~~~-g~i~~Lv~ll~~~~~~ 137 (339)
++ |++|.|++++. .+++.+++.|+++|.||+...+ ++..|.+. |+++.|+.++++...
T Consensus 172 ~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~- 249 (584)
T 3l6x_A 172 VD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIG- 249 (584)
T ss_dssp HH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHH-
T ss_pred Hh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhc-
Confidence 95 67999999872 2257899999999999998664 48888864 677899999975100
Q ss_pred CCCccCCCCHHHHHHHHHHHHhhcCCC--------------------------CChHHHHhcCcHHHHHHHhhccccCch
Q 048113 138 DDNSYGRISVQAKIDAIATLHNLSTCH--------------------------QLISPIVSSGVTYCLLQLIHSSEKSSG 191 (339)
Q Consensus 138 ~~~~~~~~~~~~~~~a~~~L~nLs~~~--------------------------~~~~~i~~~g~i~~Lv~ll~~~~~~~~ 191 (339)
.+..+...+++|+++|+|||... .+...+.+.++++.|+.+|+.+. ...
T Consensus 250 ----~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~-~~~ 324 (584)
T 3l6x_A 250 ----QKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESK-TPA 324 (584)
T ss_dssp ----TTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCC-CHH
T ss_pred ----ccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCC-CHH
Confidence 00036678999999999998641 12234455567888999997653 588
Q ss_pred HHHHHHHHHHHhhcCCH-----hhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHH
Q 048113 192 LTEKAIALLENIVSSSE-----DALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPG 266 (339)
Q Consensus 192 ~~~~a~~~L~n~l~~~~-----~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~ 266 (339)
+++.|+++|. +++... ..+..+. +.|+++.|+++|.++++.+++.|+++|.||+.+.. .+.. +..|++|.
T Consensus 325 v~E~Aa~AL~-nL~ag~~~~~~~~~~~v~-~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~~-I~~g~ip~ 399 (584)
T 3l6x_A 325 ILEASAGAIQ-NLCAGRWTYGRYIRSALR-QEKALSAIADLLTNEHERVVKAASGALRNLAVDAR--NKEL-IGKHAIPN 399 (584)
T ss_dssp HHHHHHHHHH-HHHSSCSHHHHHHHHHHT-SHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS--CHHH-HHHHHHHH
T ss_pred HHHHHHHHHH-HHHcCCccccHHHHHHHH-HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh--HHHH-HHhCCHHH
Confidence 9999999999 554331 2333343 47899999999999999999999999999998753 4554 47899999
Q ss_pred HHHhhhcC--------CHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhc--CcccchHHHHHHHHHH
Q 048113 267 LLQLSVDG--------TWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAE--GDTVAGTTLRLVEEMI 333 (339)
Q Consensus 267 L~~ll~~~--------~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~a~~~l~~~v 333 (339)
|++++.++ +..+...|+++|.||...+.. +.+.....++++.++..+... ++.+...|..+|.++.
T Consensus 400 LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~-~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 400 LVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE-AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp HHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH-HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 99999876 467889999999999765432 123345678888888887543 4555666777777664
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.97 E-value=1.5e-29 Score=244.27 Aligned_cols=316 Identities=15% Similarity=0.148 Sum_probs=270.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCcchhhHH
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCSQ-DYEAIEAALLSLLSLACGSERNKIRI 77 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~~i 77 (339)
+.|+..|.+++++.+..|+..|+++... .+..+.+.|+++.|+.+|+++ ++.++..|+++|.+++.++++++..+
T Consensus 90 ~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~ 169 (530)
T 1wa5_B 90 PQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVV 169 (530)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 5688899999999999999999998642 667788999999999999997 89999999999999999878889999
Q ss_pred hhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHH
Q 048113 78 VKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIAT 156 (339)
Q Consensus 78 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~ 156 (339)
++.|++|.|+.+|.++++.+++.|+++|.+++... .++..+...|+++.|+.++.+ .++.++..|+++
T Consensus 170 ~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-----------~~~~v~~~a~~~ 238 (530)
T 1wa5_B 170 VDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-----------NKPSLIRTATWT 238 (530)
T ss_dssp HHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-----------CCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-----------CCHHHHHHHHHH
Confidence 99999999999999999999999999999999764 568888899999999999998 789999999999
Q ss_pred HHhhcCCC-CChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHH
Q 048113 157 LHNLSTCH-QLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQC 235 (339)
Q Consensus 157 L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~ 235 (339)
|.+|+... .........|+++.|+.++.+. +..++..++++|.++....++.+..+.+ .|+++.|+.+|.++++.+
T Consensus 239 L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~Lv~lL~~~~~~v 315 (530)
T 1wa5_B 239 LSNLCRGKKPQPDWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLV 315 (530)
T ss_dssp HHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSCHHH
T ss_pred HHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCHHHHHHHHh-cCcHHHHHHHHCCCChhh
Confidence 99999865 5556667789999999999875 5789999999999544445667777776 899999999999999999
Q ss_pred HHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH
Q 048113 236 KEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID 315 (339)
Q Consensus 236 ~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 315 (339)
+..|+++|.+++..++. ....+.+.|++|.|+.++.++++.++..|+++|.+|+..+... ....+..++++.++..+.
T Consensus 316 ~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~-~~~~~~~~~l~~L~~lL~ 393 (530)
T 1wa5_B 316 QTPALRAVGNIVTGNDL-QTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQ-IQAVIDANLIPPLVKLLE 393 (530)
T ss_dssp HHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHH-HHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH-HHHHHHCCCHHHHHHHHh
Confidence 99999999999987543 6677788999999999999999999999999999998754310 122334567777777775
Q ss_pred hcCcccchHHHHHHHHHHH
Q 048113 316 AEGDTVAGTTLRLVEEMIA 334 (339)
Q Consensus 316 ~~~~~~~~~a~~~l~~~v~ 334 (339)
....+++..|...|.++..
T Consensus 394 ~~~~~v~~~a~~aL~~l~~ 412 (530)
T 1wa5_B 394 VAEYKTKKEACWAISNASS 412 (530)
T ss_dssp HSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHh
Confidence 5556677778777777654
No 18
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.97 E-value=1.9e-29 Score=237.89 Aligned_cols=316 Identities=17% Similarity=0.208 Sum_probs=262.0
Q ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113 3 EMLMDNLLNG-ERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV 78 (339)
Q Consensus 3 ~~Lv~~L~s~-~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~ 78 (339)
+.|+..|.++ ++.+|..|+++|.+++.+ ....+.+.|+++.|+.+|++++++++..|+++|.+++.+++.++..+.
T Consensus 67 ~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 146 (450)
T 2jdq_A 67 ARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVL 146 (450)
T ss_dssp HHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5678888888 899999999999999973 667778899999999999999999999999999999997778899999
Q ss_pred hcCChHHHHHhhcC-CChhHHHHHHHHHHHHhcCc-cc-hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHH
Q 048113 79 KSGIVPVLLEVLQC-QSTTLIELTVAAMLILSSCL-EN-KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIA 155 (339)
Q Consensus 79 ~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~-~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~ 155 (339)
+.|+++.|+.++.+ +++.++..++++|.+++... +. +..+ ..++++.|++++.+ .++.++..+++
T Consensus 147 ~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~-----------~~~~v~~~a~~ 214 (450)
T 2jdq_A 147 DCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFV-----------SDTDVLADACW 214 (450)
T ss_dssp HTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTC-----------CCHHHHHHHHH
T ss_pred HCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHcc-----------CCHHHHHHHHH
Confidence 99999999999996 68999999999999999754 32 3333 37899999999988 78999999999
Q ss_pred HHHhhcCC-CCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChH
Q 048113 156 TLHNLSTC-HQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQ 234 (339)
Q Consensus 156 ~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~ 234 (339)
+|.+++.. ++.+..+.+.|+++.|++++.+. +..++..|+.+|+|.....+..+..+.+ .|+++.|+++++++++.
T Consensus 215 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~ 291 (450)
T 2jdq_A 215 ALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN--DYKVVSPALRAVGNIVTGDDIQTQVILN-CSALQSLLHLLSSPKES 291 (450)
T ss_dssp HHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHTTCSSHH
T ss_pred HHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC--chhHHHHHHHHHHHHhhCChHHHHHHHH-CccHHHHHHHHcCCCHH
Confidence 99999985 46677788899999999999864 5789999999999443444555566665 79999999999999999
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHH
Q 048113 235 CKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEI 314 (339)
Q Consensus 235 ~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 314 (339)
++..|+++|.+++..++. ..+.+.+.|++|.|++++.++++.++..|+++|.+++...........+..+.++.++..+
T Consensus 292 vr~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll 370 (450)
T 2jdq_A 292 IKKEACWTISNITAGNRA-QIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLL 370 (450)
T ss_dssp HHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGG
T ss_pred HHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHh
Confidence 999999999999976543 6677888999999999999999999999999999998753211112233455666666665
Q ss_pred HhcCcccchHHHHHHHHHHH
Q 048113 315 DAEGDTVAGTTLRLVEEMIA 334 (339)
Q Consensus 315 ~~~~~~~~~~a~~~l~~~v~ 334 (339)
.....+++..|...|..+..
T Consensus 371 ~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 371 TVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp GSSCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 44445667777777776654
No 19
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=7.5e-31 Score=239.37 Aligned_cols=243 Identities=20% Similarity=0.195 Sum_probs=209.2
Q ss_pred HHHHHHHcC-----------CCHHHHHHHHHHHHHHHHH---HHHHHHh-cCChHHHHHHhccCCHHHHHHHHHHHHHhc
Q 048113 3 EMLMDNLLN-----------GERETQIQAANELGKLSRR---QKHKLVE-RGIIAPLISMLCSQDYEAIEAALLSLLSLA 67 (339)
Q Consensus 3 ~~Lv~~L~s-----------~~~~~~~~a~~~L~~l~~~---~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls 67 (339)
+.|+.+|.+ .++..|..|+++|.+++.+ ++..+.. .|+||.|+.+|+++++++++.|+++|++|+
T Consensus 76 ~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs 155 (354)
T 3nmw_A 76 QAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLS 155 (354)
T ss_dssp HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 577888842 2467899999999999975 6666755 556999999999999999999999999999
Q ss_pred cC-CcchhhHHhhcCChHHHHHhh-cCCChhHHHHHHHHHHHHhc-CccchHHHH-hcchHHHHHHHhcCCCCCCCCccC
Q 048113 68 CG-SERNKIRIVKSGIVPVLLEVL-QCQSTTLIELTVAAMLILSS-CLENKLEIA-SSGAIQRLVEILNGDLADDDNSYG 143 (339)
Q Consensus 68 ~~-~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~~~ 143 (339)
.+ ++++|..+.+.|++|.|+++| .++++++++.|+.+|+||+. +++++..|. ..|+++.|+++|.++++
T Consensus 156 ~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~------- 228 (354)
T 3nmw_A 156 WRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQ------- 228 (354)
T ss_dssp TTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCS-------
T ss_pred ccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCC-------
Confidence 84 578999999999999999975 56788999999999999998 667888888 78999999999987310
Q ss_pred CCCHHHHHHHHHHHHhhcC----CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhc-CCHhhhHHHHhhC
Q 048113 144 RISVQAKIDAIATLHNLST----CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVS-SSEDALQEIAATC 218 (339)
Q Consensus 144 ~~~~~~~~~a~~~L~nLs~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~-~~~~~~~~i~~~~ 218 (339)
+...++++.|+++|+||+. +++++..+.+.|+++.|+++|+++ +..+++.|+++|. +++ .+++++..+.+ .
T Consensus 229 ~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~-nLa~~~~~~~~~i~~-~ 304 (354)
T 3nmw_A 229 TNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH--SLTIVSNACGTLW-NLSARNPKDQEALWD-M 304 (354)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS--CHHHHHHHHHHHH-HHTSSCHHHHHHHHH-T
T ss_pred cccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC--ChHHHHHHHHHHH-HHhCCCHHHHHHHHH-C
Confidence 0112689999999999985 778899999999999999999975 5789999999999 566 68899999987 8
Q ss_pred CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHH
Q 048113 219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRS 256 (339)
Q Consensus 219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 256 (339)
|+++.|+++|+++++.+++.|+++|.+|+...+.+++.
T Consensus 305 G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~~~ 342 (354)
T 3nmw_A 305 GAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKD 342 (354)
T ss_dssp THHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGGC-
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHHhh
Confidence 99999999999999999999999999999987765443
No 20
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.97 E-value=2.1e-29 Score=219.09 Aligned_cols=240 Identities=22% Similarity=0.289 Sum_probs=219.9
Q ss_pred CChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcC-ccchHH
Q 048113 39 GIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSC-LENKLE 117 (339)
Q Consensus 39 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~ 117 (339)
|.++.|+.+|++++++++..|+++|.+++.++++++..+.+.|+++.|+.+|.+++++++..++++|.+++.. ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 6789999999999999999999999999997777999999999999999999999999999999999999986 677899
Q ss_pred HHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHH
Q 048113 118 IASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKA 196 (339)
Q Consensus 118 i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a 196 (339)
+.+.|+++.|++++++ .++.++..|+++|.+|+. +++++..+.+.|+++.|+++++++ +..++..+
T Consensus 82 ~~~~~~i~~l~~ll~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a 148 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTS-----------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEA 148 (252)
T ss_dssp HHHTTHHHHHHHHTTC-----------SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHH
T ss_pred HHHCCCHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHH
Confidence 9999999999999998 799999999999999995 678889999999999999999975 57899999
Q ss_pred HHHHHHhhcC-CHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCC
Q 048113 197 IALLENIVSS-SEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGT 275 (339)
Q Consensus 197 ~~~L~n~l~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 275 (339)
+.+|+ +++. .+..+..+.+ .|+++.|+++++++++.++..|+++|.+++..+ +..++.+.+.|+++.|++++.+++
T Consensus 149 ~~~L~-~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~L~~ll~~~~ 225 (252)
T 4hxt_A 149 ARALA-NIASGPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGP-TSAIKAIVDAGGVEVLQKLLTSTD 225 (252)
T ss_dssp HHHHH-HHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HHHHHHHHHTTHHHHHHHGGGCSC
T ss_pred HHHHH-HHHcCCHHHHHHHHH-CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHCCCc
Confidence 99999 5655 5666677776 899999999999999999999999999999865 447888899999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCC
Q 048113 276 WRAKNMARDLLLLLRDCSS 294 (339)
Q Consensus 276 ~~~~~~A~~~L~~l~~~~~ 294 (339)
+.+++.|+++|.+|.....
T Consensus 226 ~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 226 SEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 9999999999999998654
No 21
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.97 E-value=1.7e-29 Score=220.36 Aligned_cols=232 Identities=19% Similarity=0.347 Sum_probs=212.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHH-H--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSR-R--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK 79 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~-~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~ 79 (339)
+.++.+|.+++++++..|+++|+++.. + ++..+.+.|+++.|+.+|++++++++..|+++|.+++.++++++..+.+
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 578999999999999999999987655 3 8889999999999999999999999999999999999988999999999
Q ss_pred cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccch-HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113 80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENK-LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH 158 (339)
Q Consensus 80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~ 158 (339)
.|++|.|+.+|.++++.++..|+++|.|++.+++.+ ..+.+.|+++.|++++++ .++.++..|+++|+
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-----------~~~~v~~~a~~~L~ 163 (252)
T 4db8_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-----------PNEQILQEALWALS 163 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-----------SCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC-----------CCHHHHHHHHHHHH
Confidence 999999999999999999999999999999988887 888899999999999998 79999999999999
Q ss_pred hhcCC-CCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHH
Q 048113 159 NLSTC-HQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKE 237 (339)
Q Consensus 159 nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 237 (339)
+|+.. ++.+..+.+.|+++.|++++.++ +..++..|+.+|+|.+...++.+..+.+ .|+++.|+++++++++.+++
T Consensus 164 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~ 240 (252)
T 4db8_A 164 NIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQKQAVKE-AGALEKLEQLQSHENEKIQK 240 (252)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHTTTTCSSSHHHH
T ss_pred HHHcCChHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCcHHHHHHHhCCCCHHHHH
Confidence 99984 56677888999999999999875 5889999999999554567788888887 89999999999999999999
Q ss_pred HHHHHHHHhhc
Q 048113 238 HAVAILLLICK 248 (339)
Q Consensus 238 ~a~~~L~~l~~ 248 (339)
.|+++|.+++.
T Consensus 241 ~A~~~L~~l~~ 251 (252)
T 4db8_A 241 EAQEALEKLQS 251 (252)
T ss_dssp THHHHHHTTC-
T ss_pred HHHHHHHHHhc
Confidence 99999999974
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.97 E-value=4.9e-28 Score=228.15 Aligned_cols=315 Identities=15% Similarity=0.166 Sum_probs=263.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHH---H-HHHHHHhc-CChHHHHHHhccC-CHHHHHHHHHHHHHhccCCcchhhH
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSR---R-QKHKLVER-GIIAPLISMLCSQ-DYEAIEAALLSLLSLACGSERNKIR 76 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~---~-~~~~i~~~-g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~~ 76 (339)
+.|+..|.++++.+|..|+..|+.+.. + ....+.+. |+++.|+.+|+++ ++.++..|+++|.+++.+++++...
T Consensus 23 ~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 102 (450)
T 2jdq_A 23 SDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRI 102 (450)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 468899999999999999999999865 2 33456666 9999999999998 8999999999999999977788888
Q ss_pred HhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHH
Q 048113 77 IVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIA 155 (339)
Q Consensus 77 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~ 155 (339)
+++.|++|.|+.+|.++++.+++.|+++|.+++... ..+..+.+.|+++.|+++++++ .+..++..|++
T Consensus 103 ~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~----------~~~~v~~~a~~ 172 (450)
T 2jdq_A 103 VIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ----------NRLTMTRNAVW 172 (450)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC----------CCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC----------CCHHHHHHHHH
Confidence 999999999999999999999999999999999765 5688888999999999999863 68999999999
Q ss_pred HHHhhcCCC--CChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcC-CHhhhHHHHhhCCcHHHHHHHhhcCC
Q 048113 156 TLHNLSTCH--QLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSS-SEDALQEIAATCGAIRALVETIEEGS 232 (339)
Q Consensus 156 ~L~nLs~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~ 232 (339)
+|.+++... .....++ .|+++.|++++.+. +..++..++++|. +++. .++.+..+.. .|+++.|++++.+++
T Consensus 173 ~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~--~~~v~~~a~~~L~-~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~ 247 (450)
T 2jdq_A 173 ALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVS--DTDVLADACWALS-YLSDGPNDKIQAVID-AGVCRRLVELLMHND 247 (450)
T ss_dssp HHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCC--CHHHHHHHHHHHH-HHTSSSHHHHHHHHH-TTTHHHHHHHTTCSC
T ss_pred HHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccC--CHHHHHHHHHHHH-HHHCCCcHHHHHHHH-cCcHHHHHHHHCCCc
Confidence 999999753 4444444 78999999999874 5789999999999 5655 4566777776 899999999999999
Q ss_pred hHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHH
Q 048113 233 PQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQ 312 (339)
Q Consensus 233 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~ 312 (339)
+.++..|+++|.+++...+. .++.+.+.|++|.|++++.++++.++..|+++|.+++.+.... ....+..+.++.++.
T Consensus 248 ~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~L~~ 325 (450)
T 2jdq_A 248 YKVVSPALRAVGNIVTGDDI-QTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQ-IQTVIDANIFPALIS 325 (450)
T ss_dssp HHHHHHHHHHHHHHTTSCHH-HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhCChH-HHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH-HHHHHHCCCHHHHHH
Confidence 99999999999999987543 5667788999999999999999999999999999998754311 122234567777777
Q ss_pred HHHhcCcccchHHHHHHHHHHH
Q 048113 313 EIDAEGDTVAGTTLRLVEEMIA 334 (339)
Q Consensus 313 ~~~~~~~~~~~~a~~~l~~~v~ 334 (339)
.+.....+++..|...|.++..
T Consensus 326 ~l~~~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 326 ILQTAEFRTRKEAAWAITNATS 347 (450)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHc
Confidence 7654456677777777776654
No 23
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.97 E-value=2.5e-29 Score=241.91 Aligned_cols=310 Identities=16% Similarity=0.214 Sum_probs=267.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHh-cCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR--QKHKLVE-RGIIAPLISMLCSQ-DYEAIEAALLSLLSLACGSERNKIRIV 78 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~-~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~~i~ 78 (339)
+.|+.+|.++++.+|..|+.+|.+++.+ ++..+.. .|+++.|+++|.++ +++++..|+.+|.+|+. +++++..+.
T Consensus 20 ~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~ 98 (529)
T 1jdh_A 20 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIF 98 (529)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-CchhHHHHH
Confidence 5789999999999999999999999986 7766665 58999999999765 89999999999999999 578999999
Q ss_pred hcCChHHHHHhhcCCChhHHHHHHHHHHHHhcC-ccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113 79 KSGIVPVLLEVLQCQSTTLIELTVAAMLILSSC-LENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL 157 (339)
Q Consensus 79 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L 157 (339)
+.|++|.|+.+|.++++.++..|+++|.+++.. +..+..+.+.|+++.|++++++ .++.++..++.+|
T Consensus 99 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-----------~~~~~~~~~~~~L 167 (529)
T 1jdh_A 99 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-----------TNVKFLAITTDCL 167 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-----------CCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc-----------CCHHHHHHHHHHH
Confidence 999999999999999999999999999999976 4557888899999999999998 7899999999999
Q ss_pred HhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHH
Q 048113 158 HNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCK 236 (339)
Q Consensus 158 ~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 236 (339)
.+++. +++++..+.+.|+++.|++++++++ .......++.+|. +++.+++++..+.+ .|+++.|+++++++++.++
T Consensus 168 ~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~-~l~~~~~~~~~~~~-~g~~~~L~~ll~~~~~~~~ 244 (529)
T 1jdh_A 168 QILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLK-VLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLV 244 (529)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHH-HHTTSTTHHHHHHH-TTHHHHHHTTTTSSCHHHH
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC-hHHHHHHHHHHHH-HHhcCcccHHHHHH-CCCHHHHHHHHhCCChHHH
Confidence 99987 5788899999999999999999864 5677888999999 78889999999997 8999999999999999999
Q ss_pred HHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHh
Q 048113 237 EHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDA 316 (339)
Q Consensus 237 ~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 316 (339)
+.++++|.+++...+.. ....|++|.|++++.+.++.++..|+++|.+|+..++. ........++++.++..+..
T Consensus 245 ~~a~~~L~~l~~~~~~~----~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~-~~~~~~~~~~v~~L~~ll~~ 319 (529)
T 1jdh_A 245 QNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK-NKMMVCQVGGIEALVRTVLR 319 (529)
T ss_dssp HHHHHHHHHHHTTCTTC----SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHH-HHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChhh----HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCChHHHHHHHHc
Confidence 99999999999765321 12247899999999999999999999999999876431 12334456778888888764
Q ss_pred cC--cccchHHHHHHHHH
Q 048113 317 EG--DTVAGTTLRLVEEM 332 (339)
Q Consensus 317 ~~--~~~~~~a~~~l~~~ 332 (339)
.+ ++++..|.+.|.++
T Consensus 320 ~~~~~~v~~~a~~~L~nl 337 (529)
T 1jdh_A 320 AGDREDITEPAICALRHL 337 (529)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 33 56777788777765
No 24
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.97 E-value=8.8e-29 Score=238.12 Aligned_cols=300 Identities=20% Similarity=0.221 Sum_probs=253.4
Q ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113 3 EMLMDNLLNG-ERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK 79 (339)
Q Consensus 3 ~~Lv~~L~s~-~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~ 79 (339)
+.|+..|.++ +++++..|+.+|++++.+ ++..+.+.|+++.|+.+|++++++++..|+++|.+++.+++..+..+.+
T Consensus 62 ~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 141 (529)
T 1jdh_A 62 SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL 141 (529)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 4678888754 899999999999999875 8999999999999999999999999999999999999976788889999
Q ss_pred cCChHHHHHhhcCCChhHHHHHHHHHHHHhcC-ccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113 80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSC-LENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH 158 (339)
Q Consensus 80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~ 158 (339)
.|++|.|+.++.+++++++..++.+|.+++.. ++++..+.+.|+++.|+++++++ .....+..++.+|+
T Consensus 142 ~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~----------~~~~~~~~a~~~L~ 211 (529)
T 1jdh_A 142 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY----------TYEKLLWTTSRVLK 211 (529)
T ss_dssp HTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC----------CCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhC----------ChHHHHHHHHHHHH
Confidence 99999999999999999999999999999974 56788899999999999999884 56677788999999
Q ss_pred hhcCCCCChHHHHhcCcHHHHHHHhhcc-------------------------------------ccCchHHHHHHHHHH
Q 048113 159 NLSTCHQLISPIVSSGVTYCLLQLIHSS-------------------------------------EKSSGLTEKAIALLE 201 (339)
Q Consensus 159 nLs~~~~~~~~i~~~g~i~~Lv~ll~~~-------------------------------------~~~~~~~~~a~~~L~ 201 (339)
+|+.+++++..+++.|+++.|++++.++ +.+.+++..|+++|+
T Consensus 212 ~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 291 (529)
T 1jdh_A 212 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 291 (529)
T ss_dssp HHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999888899998888888877776542 124667788888999
Q ss_pred HhhcC-CHhhhHHHHhhCCcHHHHHHHhhcC--ChHHHHHHHHHHHHhhccCch--hHHHHHHhcCChHHHHHhhhcCC-
Q 048113 202 NIVSS-SEDALQEIAATCGAIRALVETIEEG--SPQCKEHAVAILLLICKSCRD--KYRSSILKEGVMPGLLQLSVDGT- 275 (339)
Q Consensus 202 n~l~~-~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~g~i~~L~~ll~~~~- 275 (339)
+++. .++++..+.+ .|+++.|++++.+. ++.+++.|+.+|.+++..++. ..+..+.+.|++|.|++++.+++
T Consensus 292 -~L~~~~~~~~~~~~~-~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~ 369 (529)
T 1jdh_A 292 -NLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH 369 (529)
T ss_dssp -HHTTTCHHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCC
T ss_pred -HHhcCCHHHHHHHHH-cCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccc
Confidence 4544 4678888887 89999999999863 379999999999999976433 25678889999999999999876
Q ss_pred HHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHh
Q 048113 276 WRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDA 316 (339)
Q Consensus 276 ~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 316 (339)
+.++..|+++|.+++.++.. +......+.++.++..+..
T Consensus 370 ~~v~~~a~~~l~nl~~~~~~--~~~~~~~~~i~~L~~ll~~ 408 (529)
T 1jdh_A 370 WPLIKATVGLIRNLALCPAN--HAPLREQGAIPRLVQLLVR 408 (529)
T ss_dssp HHHHHHHHHHHHHHTTSGGG--HHHHHHTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcChhh--hHHHHHcCCHHHHHHHHHH
Confidence 68999999999999986653 3334456677777777653
No 25
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.97 E-value=1.7e-28 Score=213.31 Aligned_cols=236 Identities=24% Similarity=0.329 Sum_probs=215.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK 79 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~ 79 (339)
+.|+..|.+++++++..|+++|.+++.+ ++..+.+.|+++.|+.+|++++++++..|+++|.+++.+++.++..+.+
T Consensus 5 ~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 84 (252)
T 4hxt_A 5 EKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD 84 (252)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 5789999999999999999999999875 8889999999999999999999999999999999999977999999999
Q ss_pred cCChHHHHHhhcCCChhHHHHHHHHHHHHh-cCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113 80 SGIVPVLLEVLQCQSTTLIELTVAAMLILS-SCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH 158 (339)
Q Consensus 80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~ 158 (339)
.|+++.|+.++.+++++++..|+++|.+++ .++..+..+.+.|+++.|++++++ .++.++..++++|+
T Consensus 85 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-----------~~~~~~~~a~~~L~ 153 (252)
T 4hxt_A 85 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-----------TDSEVQKEAARALA 153 (252)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-----------SCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-----------CCHHHHHHHHHHHH
Confidence 999999999999999999999999999999 566778889999999999999998 78999999999999
Q ss_pred hhcCC-CCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHH
Q 048113 159 NLSTC-HQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKE 237 (339)
Q Consensus 159 nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 237 (339)
|++.. +..+..+.+.|+++.|++++.++ ++.++..|+.+|+|.+...++.+..+.+ .|+++.|+++++++++.+++
T Consensus 154 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~ 230 (252)
T 4hxt_A 154 NIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPTSAIKAIVD-AGGVEVLQKLLTSTDSEVQK 230 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSBHHHHHHHHH-TTHHHHHHHGGGCSCHHHHH
T ss_pred HHHcCCHHHHHHHHHCcCHHHHHHHHCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHCCCcHHHHH
Confidence 99984 45567888999999999999974 5799999999999544447777888887 89999999999999999999
Q ss_pred HHHHHHHHhhccCch
Q 048113 238 HAVAILLLICKSCRD 252 (339)
Q Consensus 238 ~a~~~L~~l~~~~~~ 252 (339)
.|+++|.+++...+.
T Consensus 231 ~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 231 EAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHHHHHTCBC
T ss_pred HHHHHHHHHHcCCCc
Confidence 999999999976543
No 26
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.97 E-value=5.8e-29 Score=216.93 Aligned_cols=238 Identities=19% Similarity=0.277 Sum_probs=215.1
Q ss_pred cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhc-CccchH
Q 048113 38 RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSS-CLENKL 116 (339)
Q Consensus 38 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~ 116 (339)
....+.+..+|++++++++..|+++|.++...+++++..+.+.|++|.|+.+|.+++++++..|+++|.+++. +++++.
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3468899999999999999999999976555478889999999999999999999999999999999999997 567788
Q ss_pred HHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCCh-HHHHhcCcHHHHHHHhhccccCchHHHH
Q 048113 117 EIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLI-SPIVSSGVTYCLLQLIHSSEKSSGLTEK 195 (339)
Q Consensus 117 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~ 195 (339)
.+.+.|+++.|++++++ +++.++..|+++|.|++..++++ ..+.+.|+++.|+++|+++ +..++..
T Consensus 91 ~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~ 157 (252)
T 4db8_A 91 AVIDAGALPALVQLLSS-----------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQE 157 (252)
T ss_dssp HHHHTTHHHHHHHGGGC-----------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHH
T ss_pred HHHHcCCHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC--CHHHHHH
Confidence 99999999999999999 79999999999999999988888 8899999999999999875 5789999
Q ss_pred HHHHHHHhhcC-CHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcC
Q 048113 196 AIALLENIVSS-SEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDG 274 (339)
Q Consensus 196 a~~~L~n~l~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~ 274 (339)
|+++|+ +++. .++.+..+.+ .|+++.|+++++++++.+++.|+++|.+++..++ ..+..+.+.|+++.|++++.++
T Consensus 158 a~~~L~-~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~ 234 (252)
T 4db8_A 158 ALWALS-NIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQSHE 234 (252)
T ss_dssp HHHHHH-HHTTSCHHHHHHHHH-TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHTTTTCS
T ss_pred HHHHHH-HHHcCChHHHHHHHH-CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCcHHHHHHHhCCC
Confidence 999999 5554 6677777776 8999999999999999999999999999997654 4778889999999999999999
Q ss_pred CHHHHHHHHHHHHHHhc
Q 048113 275 TWRAKNMARDLLLLLRD 291 (339)
Q Consensus 275 ~~~~~~~A~~~L~~l~~ 291 (339)
++.+++.|+++|.+|+.
T Consensus 235 ~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 235 NEKIQKEAQEALEKLQS 251 (252)
T ss_dssp SSHHHHTHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999999875
No 27
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.96 E-value=1.3e-28 Score=243.11 Aligned_cols=311 Identities=16% Similarity=0.211 Sum_probs=268.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHh-cCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR--QKHKLVE-RGIIAPLISMLCSQ-DYEAIEAALLSLLSLACGSERNKIRIV 78 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~-~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~~i~ 78 (339)
+.|+.+|.++++.+|..|+.+|.+++.+ ++..+.. .|+++.|+.+|.++ +++++..|+.+|.+|+. +++++..+.
T Consensus 17 ~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~-~~~~~~~i~ 95 (644)
T 2z6h_A 17 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIF 95 (644)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-SHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHH
Confidence 5789999999999999999999999987 7777776 48999999999875 89999999999999999 577999999
Q ss_pred hcCChHHHHHhhcCCChhHHHHHHHHHHHHhcC-ccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113 79 KSGIVPVLLEVLQCQSTTLIELTVAAMLILSSC-LENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL 157 (339)
Q Consensus 79 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L 157 (339)
+.|+++.|+.+|.++++.++..|+++|.|++.. +..+..+.+.|+++.|++++++ .++.++..++.+|
T Consensus 96 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L 164 (644)
T 2z6h_A 96 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-----------TNVKFLAITTDCL 164 (644)
T ss_dssp TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC-----------CCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc-----------CCHHHHHHHHHHH
Confidence 999999999999999999999999999999975 4567788899999999999999 7888899999999
Q ss_pred HhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHH
Q 048113 158 HNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCK 236 (339)
Q Consensus 158 ~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 236 (339)
++++. +++++..+.+.|+++.|++++++.+ .+..+..++.+|. +++.+++++..+++ .|+++.|+.+++++++.++
T Consensus 165 ~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~-nLs~~~~~~~~l~~-~g~l~~L~~ll~~~~~~~~ 241 (644)
T 2z6h_A 165 QILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLK-VLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLV 241 (644)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC-CHHHHHHHHHHHH-HHTTCTTHHHHHHH-TTHHHHHHTTTTCSCHHHH
T ss_pred HHHHhcCcHHHHHHHHcCChHHHHHHHHcCC-hHHHHHHHHHHHH-HHhcCcccHHHHHH-CCCHHHHHHHHhcCCHHHH
Confidence 99997 7788999999999999999998863 5678899999999 78899999999997 8999999999999999999
Q ss_pred HHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHh
Q 048113 237 EHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDA 316 (339)
Q Consensus 237 ~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 316 (339)
+.++++|.+++...+. .....+++|.|++++.+.++.+++.|+++|.+|+..+.. ........++++.++..+..
T Consensus 242 ~~a~~~L~nL~~~~~~----~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~-~~~~v~~~g~v~~Lv~lL~~ 316 (644)
T 2z6h_A 242 QNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK-NKMMVCQVGGIEALVRTVLR 316 (644)
T ss_dssp HHHHHHHHHHGGGCTT----CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchh----hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH-HHHHHHHcCCHHHHHHHHHc
Confidence 9999999999976432 112247899999999999999999999999999886532 12233456678888887764
Q ss_pred cC--cccchHHHHHHHHHH
Q 048113 317 EG--DTVAGTTLRLVEEMI 333 (339)
Q Consensus 317 ~~--~~~~~~a~~~l~~~v 333 (339)
.+ ++++..|.+.|..+.
T Consensus 317 ~~~~~~v~~~a~~aL~nL~ 335 (644)
T 2z6h_A 317 AGDREDITEPAICALRHLT 335 (644)
T ss_dssp HTTCHHHHHHHHHHHHHHT
T ss_pred cCCcHHHHHHHHHHHHHHh
Confidence 33 567777777777653
No 28
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.96 E-value=5.2e-28 Score=238.75 Aligned_cols=300 Identities=20% Similarity=0.230 Sum_probs=254.6
Q ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113 3 EMLMDNLLNG-ERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK 79 (339)
Q Consensus 3 ~~Lv~~L~s~-~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~ 79 (339)
+.|+..|.++ +++++..|+.+|++++.+ ++..+.+.|+++.|+.+|+++++.++..|+++|.+++.+++..+..+.+
T Consensus 59 ~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~ 138 (644)
T 2z6h_A 59 SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL 138 (644)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHH
Confidence 4678888865 899999999999999876 8999999999999999999999999999999999999976778888999
Q ss_pred cCChHHHHHhhcCCChhHHHHHHHHHHHHhc-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113 80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH 158 (339)
Q Consensus 80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~ 158 (339)
.|++|.|+.+|.++++.++..++.+|.+++. +++++..+.+.|+++.|++++++. .....+..++.+|+
T Consensus 139 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~----------~~~~~~~~a~~~L~ 208 (644)
T 2z6h_A 139 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY----------TYEKLLWTTSRVLK 208 (644)
T ss_dssp TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTC----------CCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcC----------ChHHHHHHHHHHHH
Confidence 9999999999999999899999999999996 667789999999999999999884 46778889999999
Q ss_pred hhcCCCCChHHHHhcCcHHHHHHHhhcc-------------------------------------ccCchHHHHHHHHHH
Q 048113 159 NLSTCHQLISPIVSSGVTYCLLQLIHSS-------------------------------------EKSSGLTEKAIALLE 201 (339)
Q Consensus 159 nLs~~~~~~~~i~~~g~i~~Lv~ll~~~-------------------------------------~~~~~~~~~a~~~L~ 201 (339)
||+.+++++..+++.|+++.|+.++.+. +.+..++..|+++|+
T Consensus 209 nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~ 288 (644)
T 2z6h_A 209 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 288 (644)
T ss_dssp HHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999999999999888887776542 124567778888888
Q ss_pred HhhcCCHhhhHHHHhhCCcHHHHHHHhhcC-C-hHHHHHHHHHHHHhhccCch--hHHHHHHhcCChHHHHHhhhcCC-H
Q 048113 202 NIVSSSEDALQEIAATCGAIRALVETIEEG-S-PQCKEHAVAILLLICKSCRD--KYRSSILKEGVMPGLLQLSVDGT-W 276 (339)
Q Consensus 202 n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~-~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~g~i~~L~~ll~~~~-~ 276 (339)
|+....++++..+.+ .|+++.|++++.+. + +.+++.|+.+|.+++...+. ..+..+.+.|++|.|++++.+.+ +
T Consensus 289 ~L~~~~~~~~~~v~~-~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~ 367 (644)
T 2z6h_A 289 NLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367 (644)
T ss_dssp HHHTTCHHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCH
T ss_pred HHHcCCHHHHHHHHH-cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCch
Confidence 444445678888887 89999999999873 3 79999999999999975432 24566788999999999999875 7
Q ss_pred HHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH
Q 048113 277 RAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID 315 (339)
Q Consensus 277 ~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 315 (339)
.++..|+++|.+|+.+... +......++++.++..+.
T Consensus 368 ~v~~~a~~~L~nLa~~~~~--~~~i~~~~~i~~Lv~lL~ 404 (644)
T 2z6h_A 368 PLIKATVGLIRNLALCPAN--HAPLREQGAIPRLVQLLV 404 (644)
T ss_dssp HHHHHHHHHHHHHTTSGGG--HHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHH--HHHHHHcCCHHHHHHHHh
Confidence 9999999999999987653 344456677777777765
No 29
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.95 E-value=2.4e-27 Score=238.31 Aligned_cols=310 Identities=16% Similarity=0.209 Sum_probs=265.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHh-cCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR--QKHKLVE-RGIIAPLISMLCSQ-DYEAIEAALLSLLSLACGSERNKIRIV 78 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~-~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~~i~ 78 (339)
+.|+.+|.++++.+|..|+.+|.+++.+ ++..+.+ .|+++.|+.+|+++ +++++..|+.+|.+|+. +++++..+.
T Consensus 153 p~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~~~~~~~i~ 231 (780)
T 2z6g_A 153 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-HREGLLAIF 231 (780)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHH
Confidence 5688999999999999999999999985 6777775 58999999999865 89999999999999999 688899999
Q ss_pred hcCChHHHHHhhcCCChhHHHHHHHHHHHHhcC-ccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113 79 KSGIVPVLLEVLQCQSTTLIELTVAAMLILSSC-LENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL 157 (339)
Q Consensus 79 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L 157 (339)
+.|+++.|+.+|.++++.++..|+++|.||+.. +..+..+.+.|+++.|++++.+ .+..++..++.+|
T Consensus 232 ~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~-----------~~~~v~~~a~~aL 300 (780)
T 2z6g_A 232 KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-----------TNVKFLAITTDCL 300 (780)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC-----------CCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc-----------CCHHHHHHHHHHH
Confidence 999999999999999999999999999999975 4557778889999999999998 7899999999999
Q ss_pred HhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHH
Q 048113 158 HNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCK 236 (339)
Q Consensus 158 ~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 236 (339)
.+++. +++++..+++.|+++.|+.++++++ .......++.+|. +++.++.++..+++ .|+++.|+.++.++++.++
T Consensus 301 ~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~-~~~~~~~a~~aL~-~Ls~~~~~~~~i~~-~g~l~~Ll~lL~~~~~~~~ 377 (780)
T 2z6g_A 301 QILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLK-VLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLV 377 (780)
T ss_dssp HHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC-CHHHHHHHHHHHH-HHHTSTTHHHHHHH-TTHHHHHGGGTTCSCHHHH
T ss_pred HHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHH-HhhcChHHHHHHHH-hchHHHHHHHHcCCchHHH
Confidence 99987 5788899999999999999999763 4667778899999 78888899999997 8999999999999999999
Q ss_pred HHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHh
Q 048113 237 EHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDA 316 (339)
Q Consensus 237 ~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 316 (339)
+.++++|.+++..... .....+++|.|++++.+.++.++..|+++|.+|+..+.. ........++++.++..+..
T Consensus 378 ~~a~~~L~~L~~~~~~----~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~-~~~~i~~~g~i~~Lv~lL~~ 452 (780)
T 2z6g_A 378 QNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK-NKMMVCQVGGIEALVRTVLR 452 (780)
T ss_dssp HHHHHHHHHHHTTCTT----CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH-HHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchh----hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH-HHHHHHHCCCHHHHHHHHHc
Confidence 9999999999976432 112246899999999999999999999999999886532 12233456788888888864
Q ss_pred cC--cccchHHHHHHHHH
Q 048113 317 EG--DTVAGTTLRLVEEM 332 (339)
Q Consensus 317 ~~--~~~~~~a~~~l~~~ 332 (339)
.+ ++++..|.+.|.++
T Consensus 453 ~~~~~~v~~~Al~aL~nL 470 (780)
T 2z6g_A 453 AGDREDITEPAICALRHL 470 (780)
T ss_dssp HTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 33 36777787777755
No 30
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.95 E-value=3.6e-26 Score=229.72 Aligned_cols=300 Identities=20% Similarity=0.234 Sum_probs=248.0
Q ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113 3 EMLMDNLLNG-ERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK 79 (339)
Q Consensus 3 ~~Lv~~L~s~-~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~ 79 (339)
+.|+..|.++ +++++..|+.+|++++.. ++..+.+.|+++.|+.+|+++++.++..|+++|.+|+.+++..+..+.+
T Consensus 195 ~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~ 274 (780)
T 2z6g_A 195 SAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRL 274 (780)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH
Confidence 4577788754 999999999999999875 8888999999999999999999999999999999999976788888989
Q ss_pred cCChHHHHHhhcCCChhHHHHHHHHHHHHhc-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113 80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH 158 (339)
Q Consensus 80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~ 158 (339)
.|+++.|+.+|.+++..++..++.+|.+++. +++++..+.+.|+++.|++++++. .....+..++.+|+
T Consensus 275 ~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~----------~~~~~~~~a~~aL~ 344 (780)
T 2z6g_A 275 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY----------TYEKLLWTTSRVLK 344 (780)
T ss_dssp TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTC----------CCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC----------CHHHHHHHHHHHHH
Confidence 9999999999999999999999999999996 567788889999999999999884 45667778899999
Q ss_pred hhcCCCCChHHHHhcCcHHHHHHHhhcc-------------------------------------ccCchHHHHHHHHHH
Q 048113 159 NLSTCHQLISPIVSSGVTYCLLQLIHSS-------------------------------------EKSSGLTEKAIALLE 201 (339)
Q Consensus 159 nLs~~~~~~~~i~~~g~i~~Lv~ll~~~-------------------------------------~~~~~~~~~a~~~L~ 201 (339)
+|+..+.++..+++.|+++.|+.++.+. ..+..++..|+++|+
T Consensus 345 ~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~ 424 (780)
T 2z6g_A 345 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 424 (780)
T ss_dssp HHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9998888888888888888777766442 124567788889999
Q ss_pred HhhcCCHhhhHHHHhhCCcHHHHHHHhhcC-C-hHHHHHHHHHHHHhhccCch--hHHHHHHhcCChHHHHHhhhcCC-H
Q 048113 202 NIVSSSEDALQEIAATCGAIRALVETIEEG-S-PQCKEHAVAILLLICKSCRD--KYRSSILKEGVMPGLLQLSVDGT-W 276 (339)
Q Consensus 202 n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~-~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~g~i~~L~~ll~~~~-~ 276 (339)
|+....++++..+.+ .|+++.|+++|.+. + +.+++.|+++|.+|+...+. ..+..+...|++|.|++++.+++ +
T Consensus 425 ~L~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~ 503 (780)
T 2z6g_A 425 NLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHW 503 (780)
T ss_dssp HHTSSCHHHHHHHHT-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCH
T ss_pred HHHhCCHHHHHHHHH-CCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChH
Confidence 443445677888886 89999999999873 3 48999999999999875433 13567888999999999998876 4
Q ss_pred HHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH
Q 048113 277 RAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID 315 (339)
Q Consensus 277 ~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 315 (339)
.++..|+++|.+|+.+... +......+.++.++..+.
T Consensus 504 ~v~~~A~~aL~nLa~~~~~--~~~i~~~g~i~~Lv~lL~ 540 (780)
T 2z6g_A 504 PLIKATVGLIRNLALCPAN--HAPLREQGAIPRLVQLLV 540 (780)
T ss_dssp HHHHHHHHHHHHHHSSHHH--HHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHH--HHHHHHCCCHHHHHHHHH
Confidence 9999999999999976542 222334566677666664
No 31
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.95 E-value=3.8e-27 Score=201.30 Aligned_cols=199 Identities=20% Similarity=0.210 Sum_probs=175.3
Q ss_pred CChHHHHHHhccCCH--HHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhc-Cccch
Q 048113 39 GIIAPLISMLCSQDY--EAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSS-CLENK 115 (339)
Q Consensus 39 g~i~~Lv~lL~~~~~--~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~ 115 (339)
-.++.++++|+++++ +++..|++++.+|+.++++++..+++.|+||.|+++|.++++++++.|+++|.||+. +++++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 368999999999988 899999999999998789999999999999999999999999999999999999997 56789
Q ss_pred HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhc---c------
Q 048113 116 LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHS---S------ 186 (339)
Q Consensus 116 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~---~------ 186 (339)
..|.+.|+||.|+++|.+. .+.++++.|+.+|+||+..+++|..|++. +++.|++++.. +
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~----------~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~ 156 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQT----------RDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDY 156 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGC
T ss_pred HHHHHcCCHHHHHHHHccC----------CCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCccccc
Confidence 9999999999999999842 68999999999999999999999999874 69999987631 1
Q ss_pred -----ccCchHHHHHHHHHHHhhc-CCHhhhHHHHhhCCcHHHHHHHhhcC------ChHHHHHHHHHHHHhhcc
Q 048113 187 -----EKSSGLTEKAIALLENIVS-SSEDALQEIAATCGAIRALVETIEEG------SPQCKEHAVAILLLICKS 249 (339)
Q Consensus 187 -----~~~~~~~~~a~~~L~n~l~-~~~~~~~~i~~~~g~i~~Lv~lL~~~------~~~~~~~a~~~L~~l~~~ 249 (339)
..+..++++|.++|. +++ .++++|+.+.+..|.|+.|+.+++.+ +.+.+|+|+.+|+||+..
T Consensus 157 ~~~~~~~~~~v~~na~~~L~-nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 157 PKANGLLDFDIFYNVTGCLR-NMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CCCCTTCCHHHHHHHHHHHH-HHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred ccccccchHHHHHHHHHHHH-HHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 114588999999999 565 47799999998568899999999863 467899999999999854
No 32
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.95 E-value=7.7e-27 Score=199.39 Aligned_cols=202 Identities=18% Similarity=0.154 Sum_probs=174.2
Q ss_pred HHHHHHHcCCCH--HHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHH
Q 048113 3 EMLMDNLLNGER--ETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRI 77 (339)
Q Consensus 3 ~~Lv~~L~s~~~--~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i 77 (339)
+.||.+|.++++ +++..|+++|++++.+ +|..+.+.|+||+|+.+|+++++++|+.|+++|.+|+.++++++..|
T Consensus 11 ~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I 90 (233)
T 3tt9_A 11 ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEV 90 (233)
T ss_dssp HHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 678999999988 8899999999999975 89999999999999999999999999999999999999789999999
Q ss_pred hhcCChHHHHHhhc-CCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCC-CCCC--CC--ccCCCCHHHHH
Q 048113 78 VKSGIVPVLLEVLQ-CQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGD-LADD--DN--SYGRISVQAKI 151 (339)
Q Consensus 78 ~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~--~~--~~~~~~~~~~~ 151 (339)
.+.|+||.|+++|. +++.++++.|+.+|+||+..+.+|..|.+ +++++|++++..+ ++|. +. ..++.++.++.
T Consensus 91 ~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~ 169 (233)
T 3tt9_A 91 AELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFY 169 (233)
T ss_dssp HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHH
T ss_pred HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHHHH
Confidence 99999999999998 46899999999999999999999998887 4799999876421 1111 11 12335889999
Q ss_pred HHHHHHHhhcC-CCCChHHHHhc-CcHHHHHHHhhcc----ccCchHHHHHHHHHHHhhcC
Q 048113 152 DAIATLHNLST-CHQLISPIVSS-GVTYCLLQLIHSS----EKSSGLTEKAIALLENIVSS 206 (339)
Q Consensus 152 ~a~~~L~nLs~-~~~~~~~i~~~-g~i~~Lv~ll~~~----~~~~~~~~~a~~~L~n~l~~ 206 (339)
+|..+|+||+. ++++|+.|.+. |+|+.|+.+++.+ ..+.+.+++|+++|. +|+.
T Consensus 170 na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~-nLs~ 229 (233)
T 3tt9_A 170 NVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILH-NLSY 229 (233)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH-HHCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHH-HHHh
Confidence 99999999988 55899999987 7899999999863 235688999999999 6664
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.94 E-value=4.7e-25 Score=186.87 Aligned_cols=199 Identities=21% Similarity=0.329 Sum_probs=178.7
Q ss_pred HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhc-Cccc
Q 048113 36 VERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSS-CLEN 114 (339)
Q Consensus 36 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~ 114 (339)
...|..+.|+.+|++++++++..|+++|.+++.++++++..+.+.|++|.|+.+|.+++++++..|+++|.|++. ++..
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 457899999999999999999999999999998788999999999999999999999999999999999999995 5567
Q ss_pred hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHH
Q 048113 115 KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLT 193 (339)
Q Consensus 115 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 193 (339)
+..+.+.|+++.|++++++ .++.++..|+++|+|++. +++.+..+.+.|+++.|+++++++ +..++
T Consensus 89 ~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~ 155 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSS-----------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQIL 155 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTC-----------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHH
T ss_pred HHHHHHCCCHHHHHHHHcC-----------CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHHH
Confidence 8889999999999999999 799999999999999997 456667888999999999999975 57899
Q ss_pred HHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhc
Q 048113 194 EKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICK 248 (339)
Q Consensus 194 ~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 248 (339)
..|+++|.|.+...++.+..+.+ .|+++.|+++++++++.+++.|+++|.+++.
T Consensus 156 ~~a~~aL~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 156 QEALWALSNIASGGNEQKQAVKE-AGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 99999999544445888888887 8999999999999999999999999999975
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.93 E-value=3.2e-24 Score=181.71 Aligned_cols=198 Identities=21% Similarity=0.307 Sum_probs=177.1
Q ss_pred hcCChHHHHHhhcCCChhHHHHHHHHHHHHhc-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113 79 KSGIVPVLLEVLQCQSTTLIELTVAAMLILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL 157 (339)
Q Consensus 79 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L 157 (339)
..|+.+.|+.+|.+++++++..|+++|.+++. +++.+..+.+.|+++.|+++|++ .++.++..|+++|
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L 78 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-----------PNEQILQEALWAL 78 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-----------SCHHHHHHHHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC-----------CCHHHHHHHHHHH
Confidence 45789999999999999999999999999995 55678889999999999999998 7999999999999
Q ss_pred HhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHH
Q 048113 158 HNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCK 236 (339)
Q Consensus 158 ~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 236 (339)
.|++. +++++..+++.|+++.|+.+|+++ +..++..|+++|+|.....++.+..+.+ .|+++.|+++++++++.++
T Consensus 79 ~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~ 155 (210)
T 4db6_A 79 SNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQIL 155 (210)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHH
T ss_pred HHHhcCCcHHHHHHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHH
Confidence 99996 668889999999999999999985 5799999999999544456777777876 8999999999999999999
Q ss_pred HHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113 237 EHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 237 ~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 291 (339)
+.|+++|.+++..++ ..+..+.+.|+++.|++++.++++.+++.|+++|.+|++
T Consensus 156 ~~a~~aL~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 156 QEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCc-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 999999999998754 478888999999999999999999999999999999975
No 35
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=6.2e-24 Score=206.86 Aligned_cols=317 Identities=14% Similarity=0.110 Sum_probs=250.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHh-cCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCCcc------
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR--QKHKLVE-RGIIAPLISMLCS-QDYEAIEAALLSLLSLACGSER------ 72 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~-~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~------ 72 (339)
+.++.+|.+++.+.+..|++.|.-++.+ .|..+.+ .|.++.|+.++++ ++..+...++.+|.||+...+.
T Consensus 337 ~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~ 416 (778)
T 3opb_A 337 EIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXX 416 (778)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhh
Confidence 5677888887777899999999999987 8888887 6679999999995 6778999999999999984331
Q ss_pred --------------------------------hhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHh
Q 048113 73 --------------------------------NKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIAS 120 (339)
Q Consensus 73 --------------------------------~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 120 (339)
++..+.++|++|.|+.++.++++.+++.++++|.||+.++++|..+++
T Consensus 417 ~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvq 496 (778)
T 3opb_A 417 XXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQ 496 (778)
T ss_dssp ------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHH
T ss_pred hhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 567788999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHhcCCCCCCCCccCCCCH---HHHHHHHHHHHhhcCCCCChHHHH--h-cCcHHHHHHHhhccccCc----
Q 048113 121 SGAIQRLVEILNGDLADDDNSYGRISV---QAKIDAIATLHNLSTCHQLISPIV--S-SGVTYCLLQLIHSSEKSS---- 190 (339)
Q Consensus 121 ~g~i~~Lv~ll~~~~~~~~~~~~~~~~---~~~~~a~~~L~nLs~~~~~~~~i~--~-~g~i~~Lv~ll~~~~~~~---- 190 (339)
.|+++.|+.++.+ ... ..+..|+.+|.+++.+.+....+. . .|++++|+.+|..++...
T Consensus 497 qGal~~LL~lL~s-----------~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l 565 (778)
T 3opb_A 497 QGAVKIILEYLAN-----------KQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPL 565 (778)
T ss_dssp TTHHHHHHHHTTC-----------C---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC-
T ss_pred CCCHHHHHHHHhc-----------CCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccc
Confidence 9999999999988 333 378999999999986555444332 1 399999999998321111
Q ss_pred --------hHHHHHHHHHHHhhcCCH-----hhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHH-H
Q 048113 191 --------GLTEKAIALLENIVSSSE-----DALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYR-S 256 (339)
Q Consensus 191 --------~~~~~a~~~L~n~l~~~~-----~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~-~ 256 (339)
.-+..|+.+|. |++..+ +.|..++.+.|+++.|.++|.++++.++..|+++++||+.+. . .+ +
T Consensus 566 ~~~~~~~~l~~feAL~ALT-NLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~-e-~i~~ 642 (778)
T 3opb_A 566 HNDEQIKLTDNYEALLALT-NLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP-L-TIAA 642 (778)
T ss_dssp --CCCCCHHHHHHHHHHHH-HHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG-G-GTGG
T ss_pred cccccccHHHHHHHHHHHH-HHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc-H-HHHH
Confidence 12668999999 566654 457778862389999999999999999999999999999753 2 32 2
Q ss_pred HHHhc------CChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhh-hHHHHHHHHHHHh--cCcccchHHHH
Q 048113 257 SILKE------GVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLK-NELVEQIMQEIDA--EGDTVAGTTLR 327 (339)
Q Consensus 257 ~~~~~------g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~~~~~~~a~~ 327 (339)
.+... +.++.|+.++.+++.++|+.|+++|.+++...+.. -+..+. .++++.++..+.. +.++++..+..
T Consensus 643 k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i-a~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~ 721 (778)
T 3opb_A 643 KFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI-AKELLTKKELIENAIQVFADQIDDIELRQRLLM 721 (778)
T ss_dssp GTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH-HHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH-HHHHHHccccHHHHHHHHhccCCCHHHHHHHHH
Confidence 33321 23889999999999999999999999997543321 122333 3677777777764 67778888888
Q ss_pred HHHHHHH
Q 048113 328 LVEEMIA 334 (339)
Q Consensus 328 ~l~~~v~ 334 (339)
++.+++.
T Consensus 722 ~l~NL~~ 728 (778)
T 3opb_A 722 LFFGLFE 728 (778)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 8888774
No 36
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.3e-22 Score=197.60 Aligned_cols=256 Identities=16% Similarity=0.176 Sum_probs=204.1
Q ss_pred HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChh---HHHHHHHHHHH
Q 048113 31 QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTT---LIELTVAAMLI 107 (339)
Q Consensus 31 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~---~~~~a~~~L~n 107 (339)
++..+.+.|+++.|+.+++++++.+++.|+++|.++|. ++++|..+++.|+++.|+.++.+.+.. .+..|+.+|.+
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALAr 527 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTR 527 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999998 799999999999999999999988644 89999999999
Q ss_pred HhcCccchHHHH---hcchHHHHHHHhcCCCCCCCCc---cCCCCHHHHHHHHHHHHhhcCCCC-----ChHHHHhc-Cc
Q 048113 108 LSSCLENKLEIA---SSGAIQRLVEILNGDLADDDNS---YGRISVQAKIDAIATLHNLSTCHQ-----LISPIVSS-GV 175 (339)
Q Consensus 108 Ls~~~~~~~~i~---~~g~i~~Lv~ll~~~~~~~~~~---~~~~~~~~~~~a~~~L~nLs~~~~-----~~~~i~~~-g~ 175 (339)
++...+....+. ..|+|++|+.+|...+.-..+. ....+...+..|+.+|.||+..++ .+..|+.. |+
T Consensus 528 Llis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga 607 (778)
T 3opb_A 528 MLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVY 607 (778)
T ss_dssp HHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHH
T ss_pred HHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCH
Confidence 996444333332 1489999999998311000000 000112347789999999998763 37888885 99
Q ss_pred HHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhh-HHHHhh-----CCcHHHHHHHhhcCChHHHHHHHHHHHHhhcc
Q 048113 176 TYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDAL-QEIAAT-----CGAIRALVETIEEGSPQCKEHAVAILLLICKS 249 (339)
Q Consensus 176 i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~-~~i~~~-----~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 249 (339)
++.|..+|.+. +..+++.|+.+++ |++.+++++ ..+.+. .+.++.|+.++++++..++..|+++|.+++..
T Consensus 608 ~~~L~~LL~s~--n~~VrrAA~elI~-NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 608 WSTIENLMLDE--NVPLQRSTLELIS-NMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHGGGCS--SHHHHHHHHHHHH-HHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC--CHHHHHHHHHHHH-HHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 99999999874 5789999999999 677788765 344321 12488999999999999999999999999765
Q ss_pred CchhHHHHHHhc-CChHHHHHhhhc--CCHHHHHHHHHHHHHHhc
Q 048113 250 CRDKYRSSILKE-GVMPGLLQLSVD--GTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 250 ~~~~~~~~~~~~-g~i~~L~~ll~~--~~~~~~~~A~~~L~~l~~ 291 (339)
++. ....+.+. ++++.++.++.+ .++.++.+++.++.|+..
T Consensus 685 ~~~-ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 685 IPL-IAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp CHH-HHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred ChH-HHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 443 66777775 899999999999 899999999999999996
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.90 E-value=2.2e-22 Score=178.91 Aligned_cols=221 Identities=14% Similarity=0.118 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHH-HhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhh
Q 048113 14 RETQIQAANELGKLSRR--QKHKLVERGIIAPLIS-MLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVL 90 (339)
Q Consensus 14 ~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL 90 (339)
.+.+..|+..|.+++.+ +...|.+.|++++|+. +|++++++++..|+++|++++.+++..+..+++.|++|.|+.+|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 36788899999999986 8888899999999999 99999999999999999999998899999999999999999999
Q ss_pred cCC-ChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCCh
Q 048113 91 QCQ-STTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLI 167 (339)
Q Consensus 91 ~~~-~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~ 167 (339)
.++ ++.++..|+++|.|++.+. +....+.+.|+++.|+.+|++ .+..++..|+++|.+++. +++.+
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~-----------~d~~v~~~A~~aLs~L~~~~~~~~ 202 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ-----------QVQKLKVKSAFLLQNLLVGHPEHK 202 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS-----------SCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHhCChHHH
Confidence 964 7889999999999999754 456778889999999999999 899999999999999987 67788
Q ss_pred HHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHH----HHHhhc-C-ChHHHHHHHH
Q 048113 168 SPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRAL----VETIEE-G-SPQCKEHAVA 241 (339)
Q Consensus 168 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~L----v~lL~~-~-~~~~~~~a~~ 241 (339)
..+++.|+++.|+.+|.++ +.++++.|+.+|.|.+...+............+..+ ++-++. . +.++.+.+..
T Consensus 203 ~~vv~~g~i~~Lv~LL~~~--d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~ 280 (296)
T 1xqr_A 203 GTLCSMGMVQQLVALVRTE--HSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEK 280 (296)
T ss_dssp HHHHHTTHHHHHHHHHTSC--CSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHcCC--ChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 9999999999999999985 579999999999955454444444433211112222 233331 1 3455666666
Q ss_pred HHHHhh
Q 048113 242 ILLLIC 247 (339)
Q Consensus 242 ~L~~l~ 247 (339)
++.++.
T Consensus 281 il~~~f 286 (296)
T 1xqr_A 281 LLQTCF 286 (296)
T ss_dssp HHHHHC
T ss_pred HHHHHc
Confidence 665554
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.90 E-value=4.5e-22 Score=176.83 Aligned_cols=184 Identities=16% Similarity=0.190 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHH-hhcCCChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHH
Q 048113 53 YEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLE-VLQCQSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEI 130 (339)
Q Consensus 53 ~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~l 130 (339)
.+.+..|+..|..++. +.++...+.+.|++|.|+. +|.++++.++..|+++|.|++.++ .++..+.+.|++++|+++
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 3678899999999999 6889999999999999999 999999999999999999999755 568889999999999999
Q ss_pred hcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHh
Q 048113 131 LNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSED 209 (339)
Q Consensus 131 l~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~ 209 (339)
|+++ .+..++..|+++|.|++.+ ++....+.+.|+++.|+.+|+++ +..++..|+++|+|.+..+++
T Consensus 133 L~~~----------~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~--d~~v~~~A~~aLs~L~~~~~~ 200 (296)
T 1xqr_A 133 LDRD----------ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQKLKVKSAFLLQNLLVGHPE 200 (296)
T ss_dssp HHHC----------SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCGG
T ss_pred HccC----------CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCChH
Confidence 9863 4789999999999999985 55677888999999999999985 589999999999965566778
Q ss_pred hhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccC
Q 048113 210 ALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSC 250 (339)
Q Consensus 210 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 250 (339)
.+..+++ .|+++.|+.+|.++++.+++.++.+|.+++...
T Consensus 201 ~~~~vv~-~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 201 HKGTLCS-MGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp GHHHHHH-TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHH-cCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 8888887 899999999999999999999999999999774
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.74 E-value=5.7e-16 Score=147.51 Aligned_cols=316 Identities=15% Similarity=0.160 Sum_probs=235.2
Q ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccC--CHHHHHHHHHHHHHhccCCcc-------
Q 048113 3 EMLMDNLL-NGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQ--DYEAIEAALLSLLSLACGSER------- 72 (339)
Q Consensus 3 ~~Lv~~L~-s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~~------- 72 (339)
+.|++++. +.-.+.|..|+..|+.++++++..+ ..++++.|+..|+.+ |.++...++.+|.++...+++
T Consensus 24 ~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~V-g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~ 102 (651)
T 3grl_A 24 QKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEV-GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENS 102 (651)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHH-HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---------
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHh-hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccc
Confidence 45777787 4567899999999999998766554 467789999999775 889999999999887664332
Q ss_pred ----------hhhHHh-hcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc--chHHHH-hcchHHHHHHHhcCCCCCC
Q 048113 73 ----------NKIRIV-KSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE--NKLEIA-SSGAIQRLVEILNGDLADD 138 (339)
Q Consensus 73 ----------~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~--~~~~i~-~~g~i~~Lv~ll~~~~~~~ 138 (339)
+...+. +.+.++.|+.+|++.+..++..++.+|..|+...+ .+..|. ..++|+.|+.+|.+
T Consensus 103 ~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d----- 177 (651)
T 3grl_A 103 TRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD----- 177 (651)
T ss_dssp -----CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC-----
T ss_pred cccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC-----
Confidence 122333 45889999999999999999999999999986543 467777 56999999999998
Q ss_pred CCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhc-CcHHHHHHHhhccc--cCchHHHHHHHHHHHhhcCCHhhhHHHH
Q 048113 139 DNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSS-GVTYCLLQLIHSSE--KSSGLTEKAIALLENIVSSSEDALQEIA 215 (339)
Q Consensus 139 ~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~-g~i~~Lv~ll~~~~--~~~~~~~~a~~~L~n~l~~~~~~~~~i~ 215 (339)
....+|..++..|.+|+.+....+.++.. |+++.|++++.... +...+...|+.++.|++..++.|+..+.
T Consensus 178 ------~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~Fr 251 (651)
T 3grl_A 178 ------SREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFK 251 (651)
T ss_dssp ------SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------chHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHH
Confidence 78999999999999999987777776666 99999999997732 1346789999999977778888988888
Q ss_pred hhCCcHHHHHHHhhcCChH------HHHH---HHHHHHHhhccCc-----hhHHHHHHhcCChHHHHHhhhcC--CHHHH
Q 048113 216 ATCGAIRALVETIEEGSPQ------CKEH---AVAILLLICKSCR-----DKYRSSILKEGVMPGLLQLSVDG--TWRAK 279 (339)
Q Consensus 216 ~~~g~i~~Lv~lL~~~~~~------~~~~---a~~~L~~l~~~~~-----~~~~~~~~~~g~i~~L~~ll~~~--~~~~~ 279 (339)
+ .|+++.|..+++.+.+. ...+ +..++.-|+..+. ..++..+.+.|+++.|++++... ...++
T Consensus 252 E-t~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~ 330 (651)
T 3grl_A 252 E-GSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADIL 330 (651)
T ss_dssp H-TTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHH
T ss_pred H-cCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHH
Confidence 7 89999999999754321 2223 5566666665432 23677889999999999998765 67788
Q ss_pred HHHHHHHHHHhccCCCcchhhhhhh---------HHHHHHHHHHH--hcCcccchHHHHHHHHHH
Q 048113 280 NMARDLLLLLRDCSSFGSRSKQLKN---------ELVEQIMQEID--AEGDTVAGTTLRLVEEMI 333 (339)
Q Consensus 280 ~~A~~~L~~l~~~~~~~~~~~~~~~---------~~~~~i~~~~~--~~~~~~~~~a~~~l~~~v 333 (339)
..|..++..+.+++.. .++.+.. ..+-.++..+. ...-++|-.|..++++.+
T Consensus 331 ~~Al~tla~~irgN~~--~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 331 TETINTVSEVIRGCQV--NQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp HHHHHHHHHHHTTCHH--HHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHH--HHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 9999999887766542 2333321 22222222221 223445666777777765
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.59 E-value=1.5e-13 Score=131.01 Aligned_cols=278 Identities=18% Similarity=0.190 Sum_probs=209.1
Q ss_pred cCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCC--ChhHHHHHHHHHHHHhcCccc
Q 048113 38 RGIIAPLISMLCSQ-DYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQ--STTLIELTVAAMLILSSCLEN 114 (339)
Q Consensus 38 ~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~~ 114 (339)
...|+.|+.-+++. -.+-|+.|+..|..+++. .+ .-+..++++.|+..|+.. |.++...++.+|.++-..++.
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~-~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YR-LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TT-THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hH-HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 44577777766554 678899999999999983 33 334577899999999875 788999999999998653321
Q ss_pred ------------------h-HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CC-ChHHHHhc
Q 048113 115 ------------------K-LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQ-LISPIVSS 173 (339)
Q Consensus 115 ------------------~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~-~~~~i~~~ 173 (339)
. ..+.+.+.|+.|+.+|++ .+..++.+++..|..|+.. ++ ..+.|..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~-----------~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~ 164 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE-----------FDFHVRWPGVKLLTSLLKQLGPQVQQIILVS 164 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTC-----------CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHS
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC-----------ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhC
Confidence 0 123367899999999998 8999999999999999874 44 67888877
Q ss_pred -CcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCC----hHHHHHHHHHHHHhhc
Q 048113 174 -GVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGS----PQCKEHAVAILLLICK 248 (339)
Q Consensus 174 -g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~----~~~~~~a~~~L~~l~~ 248 (339)
++++.|+.+|.+. ++.++..++..|. .++.+....++++.-+|+++.|+++++... ..+.+.++.+|.+|..
T Consensus 165 p~gi~~Lv~lL~d~--rE~iRneallLL~-~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr 241 (651)
T 3grl_A 165 PMGVSRLMDLLADS--REVIRNDGVLLLQ-ALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLK 241 (651)
T ss_dssp TTHHHHHHGGGGCS--SHHHHHHHHHHHH-HHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHhCc--hHHHHHHHHHHHH-HHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHh
Confidence 9999999999974 5889999999999 566665555555544799999999998733 4778889999999999
Q ss_pred cCchhHHHHHHhcCChHHHHHhhhcCC------HHHH---HHHHHHHHHHhccCCC----cchh-hhhhhHHHHHHHHHH
Q 048113 249 SCRDKYRSSILKEGVMPGLLQLSVDGT------WRAK---NMARDLLLLLRDCSSF----GSRS-KQLKNELVEQIMQEI 314 (339)
Q Consensus 249 ~~~~~~~~~~~~~g~i~~L~~ll~~~~------~~~~---~~A~~~L~~l~~~~~~----~~~~-~~~~~~~~~~i~~~~ 314 (339)
.++. .+..+.+.|.+|.|..++..+. ++.. ..+..+++.|...+.. ..++ ...+.+++..+++..
T Consensus 242 ~N~s-NQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll 320 (651)
T 3grl_A 242 NNNS-NQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTIL 320 (651)
T ss_dssp TCHH-HHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred cCHH-HHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHH
Confidence 8754 7888999999999999986432 2222 3366677777664321 1122 234567777777776
Q ss_pred HhcC--cccchHHHHHHHHHHH
Q 048113 315 DAEG--DTVAGTTLRLVEEMIA 334 (339)
Q Consensus 315 ~~~~--~~~~~~a~~~l~~~v~ 334 (339)
...+ ++++..|.+.+++++.
T Consensus 321 ~~~~~p~~i~~~Al~tla~~ir 342 (651)
T 3grl_A 321 MATGVPADILTETINTVSEVIR 342 (651)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHHHHHHHHh
Confidence 6665 5667778888888764
No 41
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.52 E-value=1.6e-12 Score=114.44 Aligned_cols=224 Identities=12% Similarity=0.062 Sum_probs=172.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI 82 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~ 82 (339)
+.|+..|.++++.+|..|++.|.++. ..+.++.|+.+|+++++.++..|+++|..+... +.... ..
T Consensus 26 ~~L~~~L~~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-~~~~~-----~l 91 (280)
T 1oyz_A 26 DELFRLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-KKCED-----NV 91 (280)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-TTTHH-----HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHccC--------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-cccch-----HH
Confidence 56889999999999999999998765 345688899999999999999999999998762 22111 12
Q ss_pred hHHHHH-hhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhc
Q 048113 83 VPVLLE-VLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS 161 (339)
Q Consensus 83 i~~Lv~-lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs 161 (339)
++.|.. ++.++++.++..++++|.++....+. .....++.|+..+.+ .++.++..|+.+|.++.
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d-----------~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFD-----------KSTNVRRATAFAISVIN 156 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTC-----------SCHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhC-----------CCHHHHHHHHHHHHhcC
Confidence 344442 45677899999999999998742221 123468999999988 79999999999999875
Q ss_pred CCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHH
Q 048113 162 TCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVA 241 (339)
Q Consensus 162 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~ 241 (339)
. .++++.|+.++.++ +..++..|+.+|+ .+... ...+++.|+.+++++++.++..|+.
T Consensus 157 ~----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~-~~~~~---------~~~~~~~L~~~l~d~~~~vR~~A~~ 214 (280)
T 1oyz_A 157 D----------KATIPLLINLLKDP--NGDVRNWAAFAIN-INKYD---------NSDIRDCFVEMLQDKNEEVRIEAII 214 (280)
T ss_dssp ------------CCHHHHHHHHTCS--SHHHHHHHHHHHH-HHTCC---------CHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred C----------HHHHHHHHHHHcCC--CHHHHHHHHHHHH-hhccC---------cHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 3 24899999999874 5788999999999 55321 1246788999999999999999999
Q ss_pred HHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113 242 ILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 242 ~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 291 (339)
+|..+.. + .++|.|++.+.+++ ++..|..+|..+..
T Consensus 215 aL~~~~~---~---------~~~~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 215 GLSYRKD---K---------RVLSVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp HHHHTTC---G---------GGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred HHHHhCC---H---------hhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence 9998862 1 36888999888754 78888888877743
No 42
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.49 E-value=1.8e-12 Score=131.61 Aligned_cols=312 Identities=11% Similarity=0.092 Sum_probs=212.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHh-------cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhh
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVE-------RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKI 75 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~-------~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~ 75 (339)
+.|+..+.++++..+..|+.+|..++.+....+.. ..+++.+++.+++.++.+|..|+++|..+....+.. .
T Consensus 131 ~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~-~ 209 (852)
T 4fdd_A 131 PKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA-L 209 (852)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH-H
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHH-H
Confidence 45778888999999999999999999873333321 336777777888889999999999999888743321 1
Q ss_pred HHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccc--hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHH
Q 048113 76 RIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN--KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDA 153 (339)
Q Consensus 76 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a 153 (339)
.-.-.+.++.+...+.+++++++..++.+|.+++...+. +..+ .+.++.+++.+++ .++.++..|
T Consensus 210 ~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l--~~l~~~l~~~~~~-----------~~~~vr~~a 276 (852)
T 4fdd_A 210 MLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM--HNIVEYMLQRTQD-----------QDENVALEA 276 (852)
T ss_dssp HTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH--HHHHHHHHHHHTC-----------SSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH--HHHHHHHHHHccC-----------CcHHHHHHH
Confidence 111125678888888889999999999999999864432 1211 2478888888887 789999999
Q ss_pred HHHHHhhcCCCCChHHHHh--cCcHHHHHHHhh----------cc--c--------cCchHHHHHHHHHHHhhcCCHhhh
Q 048113 154 IATLHNLSTCHQLISPIVS--SGVTYCLLQLIH----------SS--E--------KSSGLTEKAIALLENIVSSSEDAL 211 (339)
Q Consensus 154 ~~~L~nLs~~~~~~~~i~~--~g~i~~Lv~ll~----------~~--~--------~~~~~~~~a~~~L~n~l~~~~~~~ 211 (339)
+.++..++.....+..+.. ...++.++..+. .. + ..-.++..+..+|. .++....
T Consensus 277 ~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~-~la~~~~-- 353 (852)
T 4fdd_A 277 CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALD-VLANVYR-- 353 (852)
T ss_dssp HHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHH-HHHHHHG--
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHH-HHHHhcc--
Confidence 9999999875533332211 135666666662 11 0 11245777777777 4543322
Q ss_pred HHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113 212 QEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 212 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 291 (339)
..+.. ..++.+.+.+.+++...++.|+.++.+++...+..... .-.+++|.|+..+.+.++.++..|++++..++.
T Consensus 354 ~~~~~--~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~--~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 429 (852)
T 4fdd_A 354 DELLP--HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP--YLPELIPHLIQCLSDKKALVRSITCWTLSRYAH 429 (852)
T ss_dssp GGGHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG--GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHH
T ss_pred HHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 12332 46777788888889999999999999999765332111 124678999999999999999999999999887
Q ss_pred cCCCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHHHHh
Q 048113 292 CSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIAKL 336 (339)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v~~~ 336 (339)
..... .....-...++.++..+.-...+++..|...+..+++..
T Consensus 430 ~~~~~-~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 430 WVVSQ-PPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp HHHHS-CTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred Hhccc-hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 42100 111223445555554443234566777877777776543
No 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.46 E-value=8e-12 Score=105.25 Aligned_cols=190 Identities=16% Similarity=0.140 Sum_probs=156.6
Q ss_pred hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchH
Q 048113 37 ERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKL 116 (339)
Q Consensus 37 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~ 116 (339)
..+.++.|+.+|+++++.++..|+..|..+.. .++++.|+.++.++++.++..++.+|..+..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 46789999999999999999999999988755 2578999999999999999999999988642
Q ss_pred HHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHH
Q 048113 117 EIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKA 196 (339)
Q Consensus 117 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a 196 (339)
.+.++.|+.++.+ .++.++..|+.+|..+.. .+.++.|+.++.++ +..++..|
T Consensus 80 ----~~~~~~L~~~l~~-----------~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~--~~~vr~~a 132 (211)
T 3ltm_A 80 ----ERAVEPLIKALKD-----------EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE--DWFVRIAA 132 (211)
T ss_dssp ----GGGHHHHHHHTTC-----------SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS--SHHHHHHH
T ss_pred ----HHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC--CHHHHHHH
Confidence 4578999999988 799999999999998843 25789999999764 57899999
Q ss_pred HHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCH
Q 048113 197 IALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTW 276 (339)
Q Consensus 197 ~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~ 276 (339)
+.+|+ .+. . ...++.|..+++++++.++..++.+|..+.. + .+++.|.+++.++++
T Consensus 133 ~~aL~-~~~----------~-~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---~---------~~~~~L~~~l~d~~~ 188 (211)
T 3ltm_A 133 AFALG-EIG----------D-ERAVEPLIKALKDEDGWVRQSAADALGEIGG---E---------RVRAAMEKLAETGTG 188 (211)
T ss_dssp HHHHH-HHC----------C-GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---H---------HHHHHHHHHHHHCCH
T ss_pred HHHHH-HcC----------C-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---h---------hHHHHHHHHHhCCCH
Confidence 99999 442 1 4578999999999999999999999999852 2 257889999999999
Q ss_pred HHHHHHHHHHHHHhccCC
Q 048113 277 RAKNMARDLLLLLRDCSS 294 (339)
Q Consensus 277 ~~~~~A~~~L~~l~~~~~ 294 (339)
.++..|..+|..+.....
T Consensus 189 ~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 189 FARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHhcCCCCC
Confidence 999999999998876543
No 44
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.45 E-value=7.3e-12 Score=104.64 Aligned_cols=182 Identities=20% Similarity=0.183 Sum_probs=154.7
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113 2 EEMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSG 81 (339)
Q Consensus 2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g 81 (339)
.+.++..|.++++.+|..|+..|..+. ..+.++.|+.+|.++++.++..|+.+|..+.. .+
T Consensus 16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-----------~~ 76 (201)
T 3ltj_A 16 VEMYIKNLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRAAADALGQIGD-----------ER 76 (201)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GG
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----------HH
Confidence 367899999999999999999997654 35788999999999999999999999988864 25
Q ss_pred ChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhc
Q 048113 82 IVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS 161 (339)
Q Consensus 82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs 161 (339)
+++.|+.+|.++++.++..|+++|.++.. ...++.|+.++.+ .++.++..|+.+|..+.
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d-----------~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKD-----------EDWFVRIAAAFALGEIG 135 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC-----------SSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHhC
Confidence 78999999999999999999999988643 3578999999988 79999999999999984
Q ss_pred CCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHH
Q 048113 162 TCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVA 241 (339)
Q Consensus 162 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~ 241 (339)
. .+.++.|..++.+. +..++..|+.+|+ .+. ...+++.|..+++++++.++..|..
T Consensus 136 ~----------~~~~~~L~~~l~d~--~~~vr~~A~~aL~-~~~-----------~~~~~~~L~~~l~d~~~~vr~~A~~ 191 (201)
T 3ltj_A 136 D----------ERAVEPLIKALKDE--DGWVRQSAADALG-EIG-----------GERVRAAMEKLAETGTGFARKVAVN 191 (201)
T ss_dssp C----------GGGHHHHHHHTTCS--SHHHHHHHHHHHH-HHC-----------SHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred C----------HHHHHHHHHHHcCC--CHHHHHHHHHHHH-HhC-----------chhHHHHHHHHHhCCCHHHHHHHHH
Confidence 2 35788999999874 5789999999999 441 1346788999999999999999999
Q ss_pred HHHHhh
Q 048113 242 ILLLIC 247 (339)
Q Consensus 242 ~L~~l~ 247 (339)
+|..+.
T Consensus 192 aL~~l~ 197 (201)
T 3ltj_A 192 YLETHK 197 (201)
T ss_dssp HHHHCC
T ss_pred HHHHHH
Confidence 998874
No 45
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.45 E-value=6e-12 Score=106.00 Aligned_cols=184 Identities=20% Similarity=0.179 Sum_probs=153.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI 82 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~ 82 (339)
+.|+..|.++++.+|..|+..|..+. ..+.++.|+.+|.++++.++..|+++|..+.. .+.
T Consensus 22 ~~L~~~L~~~~~~vR~~A~~~L~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~ 82 (211)
T 3ltm_A 22 EMYIKNLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRAAADALGQIGD-----------ERA 82 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----------HHH
Confidence 57889999999999999999997653 35789999999999999999999999998864 357
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113 83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST 162 (339)
Q Consensus 83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~ 162 (339)
++.|+.+|.++++.++..|+.+|.++.. .+.++.|+.++.+ .++.++..|+.+|.++..
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d-----------~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKD-----------EDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC-----------SSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHcCC
Confidence 8999999999999999999999988743 3578999999988 799999999999999842
Q ss_pred CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHH
Q 048113 163 CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAI 242 (339)
Q Consensus 163 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~ 242 (339)
...++.|..++.+. +..++..++.+|+ .+.. ..+++.|..+++++++.++..|..+
T Consensus 142 ----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~-~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~a 197 (211)
T 3ltm_A 142 ----------ERAVEPLIKALKDE--DGWVRQSAADALG-EIGG-----------ERVRAAMEKLAETGTGFARKVAVNY 197 (211)
T ss_dssp ----------GGGHHHHHHHTTCS--SHHHHHHHHHHHH-HHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCC--CHHHHHHHHHHHH-HhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 24788999999764 5789999999999 4421 3567889999999999999999999
Q ss_pred HHHhhccC
Q 048113 243 LLLICKSC 250 (339)
Q Consensus 243 L~~l~~~~ 250 (339)
|.++....
T Consensus 198 L~~~~~~~ 205 (211)
T 3ltm_A 198 LETHKSFN 205 (211)
T ss_dssp HHC-----
T ss_pred HHhcCCCC
Confidence 99987654
No 46
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.44 E-value=2.9e-11 Score=106.41 Aligned_cols=199 Identities=10% Similarity=0.021 Sum_probs=157.4
Q ss_pred HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccch
Q 048113 36 VERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENK 115 (339)
Q Consensus 36 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~ 115 (339)
...+.++.|+..|+++++.++..|+++|..+.. .++++.|+.++.++++.++..|+++|.++...+...
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~ 88 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE 88 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence 457899999999999999999999999998873 246889999999999999999999999887533321
Q ss_pred HHHHhcchHHHHHH-HhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHH
Q 048113 116 LEIASSGAIQRLVE-ILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLT 193 (339)
Q Consensus 116 ~~i~~~g~i~~Lv~-ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 193 (339)
. ..++.|.+ ++.+ .++.++..++.+|.++.. ++.. ...+++.|+..+.+. +..++
T Consensus 89 ~-----~l~~~L~~~~~~d-----------~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~--~~~vR 145 (280)
T 1oyz_A 89 D-----NVFNILNNMALND-----------KSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDK--STNVR 145 (280)
T ss_dssp H-----HHHHHHHHHHHHC-----------SCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCS--CHHHH
T ss_pred h-----HHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCC--CHHHH
Confidence 1 13444543 3455 789999999999999864 2211 224678899999874 57889
Q ss_pred HHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc
Q 048113 194 EKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD 273 (339)
Q Consensus 194 ~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~ 273 (339)
..|+.+|+ .+. . .++++.|+.+++++++.++..|+.+|..+.... + .+++.|.+++.+
T Consensus 146 ~~a~~aL~-~~~----------~-~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~---------~~~~~L~~~l~d 203 (280)
T 1oyz_A 146 RATAFAIS-VIN----------D-KATIPLLINLLKDPNGDVRNWAAFAININKYDN-S---------DIRDCFVEMLQD 203 (280)
T ss_dssp HHHHHHHH-TC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC-H---------HHHHHHHHHTTC
T ss_pred HHHHHHHH-hcC----------C-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc-H---------HHHHHHHHHhcC
Confidence 99999999 432 1 468999999999999999999999999985332 2 257889999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q 048113 274 GTWRAKNMARDLLLLLR 290 (339)
Q Consensus 274 ~~~~~~~~A~~~L~~l~ 290 (339)
.++.++..|+.+|..+.
T Consensus 204 ~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp SCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999998875
No 47
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.44 E-value=8.2e-12 Score=120.91 Aligned_cols=301 Identities=11% Similarity=0.179 Sum_probs=205.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSG 81 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g 81 (339)
+.+..++.++++.+|..|+.+|..++.. ... ......++.+..+++++++.+|..|+.+|..++...+.. .....
T Consensus 167 ~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~ 242 (588)
T 1b3u_A 167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLELD-NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEAL 242 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH-HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH-hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHH
Confidence 3455666788999999999999999876 222 224567888889999999999999999999988743321 22335
Q ss_pred ChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhc
Q 048113 82 IVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS 161 (339)
Q Consensus 82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs 161 (339)
.+|.+..++++++..+|..++.+|..++..-.. .......++.+++++++ .++.++..|+.+|..++
T Consensus 243 ~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d-----------~~~~vr~~a~~~l~~~~ 309 (588)
T 1b3u_A 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKD-----------CEAEVRAAASHKVKEFC 309 (588)
T ss_dssp THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTC-----------SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCC-----------CcHHHHHHHHHHHHHHH
Confidence 788888888888899999999999998853211 12234578999999988 79999999999999987
Q ss_pred CCC--CChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHH
Q 048113 162 TCH--QLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHA 239 (339)
Q Consensus 162 ~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a 239 (339)
..- +.+....-...++.+..++++. +..++..++.+|. .++..-. ..... ...++.+..++++.++.++..+
T Consensus 310 ~~~~~~~~~~~~~~~l~p~l~~~l~d~--~~~vR~~a~~~l~-~l~~~~~-~~~~~--~~l~p~l~~~l~d~~~~Vr~~a 383 (588)
T 1b3u_A 310 ENLSADCRENVIMSQILPCIKELVSDA--NQHVKSALASVIM-GLSPILG-KDNTI--EHLLPLFLAQLKDECPEVRLNI 383 (588)
T ss_dssp HTSCTTTHHHHHHHTHHHHHHHHHTCS--CHHHHHHHHTTGG-GGHHHHC-HHHHH--HHTHHHHHHHHTCSCHHHHHHH
T ss_pred HHhChhhhhhHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHH-HHHHHhh-HhHHH--HHHHHHHHHHhCCCchHHHHHH
Confidence 632 2222122345678888888764 5788888888887 4542211 11122 3477888889988888999999
Q ss_pred HHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcC-
Q 048113 240 VAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEG- 318 (339)
Q Consensus 240 ~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 318 (339)
+.++..++...+.. . .....+|.|.+++.+.++.++..++.++..++..-. ........++.++..+ .|+
T Consensus 384 ~~~l~~l~~~~~~~---~-~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~~l-~d~~ 454 (588)
T 1b3u_A 384 ISNLDCVNEVIGIR---Q-LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG----VEFFDEKLNSLCMAWL-VDHV 454 (588)
T ss_dssp HTTCHHHHHHSCHH---H-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC----GGGCCHHHHHHHHHGG-GCSS
T ss_pred HHHHHHHHHhcCHH---H-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHh-cCCc
Confidence 98888887543321 1 223467888888888888888888888887765321 1112223333333322 333
Q ss_pred cccchHHHHHHHHHHHH
Q 048113 319 DTVAGTTLRLVEEMIAK 335 (339)
Q Consensus 319 ~~~~~~a~~~l~~~v~~ 335 (339)
..++..|...+..++..
T Consensus 455 ~~Vr~~a~~~l~~l~~~ 471 (588)
T 1b3u_A 455 YAIREAATSNLKKLVEK 471 (588)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566677766666554
No 48
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.41 E-value=2.3e-11 Score=101.60 Aligned_cols=186 Identities=16% Similarity=0.139 Sum_probs=156.7
Q ss_pred cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHH
Q 048113 38 RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLE 117 (339)
Q Consensus 38 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~ 117 (339)
.+..+.++++|+++++.++..|+.+|..+.. .+.++.|+.+|.++++.++..|+.+|..+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 4567889999999999999999999998765 2578999999999999999999999987642
Q ss_pred HHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHH
Q 048113 118 IASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAI 197 (339)
Q Consensus 118 i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~ 197 (339)
.+.++.|+.++.+ .++.++..|+.+|..+.. ..+++.|+.++.+. +..++..|+
T Consensus 75 ---~~~~~~L~~~l~d-----------~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~--~~~vr~~a~ 128 (201)
T 3ltj_A 75 ---ERAVEPLIKALKD-----------EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE--DWFVRIAAA 128 (201)
T ss_dssp ---GGGHHHHHHHTTC-----------SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS--SHHHHHHHH
T ss_pred ---HHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCC--CHHHHHHHH
Confidence 3578999999988 799999999999998743 24788999999764 578999999
Q ss_pred HHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHH
Q 048113 198 ALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWR 277 (339)
Q Consensus 198 ~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~ 277 (339)
.+|+ .+. . .+.++.|+.+++++++.++..|+.+|..+.. + .+++.|.+++.+.++.
T Consensus 129 ~aL~-~~~----------~-~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---~---------~~~~~L~~~l~d~~~~ 184 (201)
T 3ltj_A 129 FALG-EIG----------D-ERAVEPLIKALKDEDGWVRQSAADALGEIGG---E---------RVRAAMEKLAETGTGF 184 (201)
T ss_dssp HHHH-HHT----------C-GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---H---------HHHHHHHHHHHHCCHH
T ss_pred HHHH-HhC----------C-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---h---------hHHHHHHHHHhCCCHH
Confidence 9999 442 2 4688999999999999999999999999842 2 1578899999999999
Q ss_pred HHHHHHHHHHHHhc
Q 048113 278 AKNMARDLLLLLRD 291 (339)
Q Consensus 278 ~~~~A~~~L~~l~~ 291 (339)
++..|..+|..+..
T Consensus 185 vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 185 ARKVAVNYLETHKS 198 (201)
T ss_dssp HHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987743
No 49
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.38 E-value=1.8e-11 Score=118.54 Aligned_cols=259 Identities=10% Similarity=0.069 Sum_probs=184.2
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHH
Q 048113 7 DNLLNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPV 85 (339)
Q Consensus 7 ~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~ 85 (339)
.++.++++.+|..|+.+|.+++.. ... ....-.++.+..+.+++++..|..|+.++..++...+.. .....+|.
T Consensus 94 ~l~~~~~~~vR~~a~~~L~~l~~~~~~~-~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~----~~~~l~~~ 168 (588)
T 1b3u_A 94 SLATVEETVVRDKAVESLRAISHEHSPS-DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA----VKAELRQY 168 (588)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHTTSCHH-HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH----HHHHHHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH----HHHHHHHH
Confidence 334678889999999999998876 222 122335666667777788889999999999888743321 23346788
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCC
Q 048113 86 LLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQ 165 (339)
Q Consensus 86 Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~ 165 (339)
+..++.++++.+|..|+.+|..++..-... ......+|.+..++.+ ++..++..|+.+|..++..-.
T Consensus 169 l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d-----------~~~~vr~~a~~~l~~l~~~~~ 235 (588)
T 1b3u_A 169 FRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASD-----------EQDSVRLLAVEACVNIAQLLP 235 (588)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTC-----------SCHHHHTTHHHHHHHHHHHSC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcC-----------CcHHHHHHHHHHHHHHHHhCC
Confidence 888888889999999999999998644322 2235678888888887 789999999999999875321
Q ss_pred ChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHH
Q 048113 166 LISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLL 245 (339)
Q Consensus 166 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 245 (339)
. ......+++.+..++.+. +..++..++.+|+ .+...... .... ...++.++++++++++.++..|+.+|..
T Consensus 236 ~--~~~~~~~~~~l~~~~~d~--~~~vR~~a~~~l~-~l~~~~~~-~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 307 (588)
T 1b3u_A 236 Q--EDLEALVMPTLRQAAEDK--SWRVRYMVADKFT-ELQKAVGP-EITK--TDLVPAFQNLMKDCEAEVRAAASHKVKE 307 (588)
T ss_dssp H--HHHHHHTHHHHHHHHTCS--SHHHHHHHHHTHH-HHHHHHCH-HHHH--HTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHccCC--CHHHHHHHHHHHH-HHHHHhCc-ccch--hHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 1 112234677777777663 5678889988888 45432111 1122 4678999999999999999999999999
Q ss_pred hhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113 246 ICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 246 l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 291 (339)
++...+...+....-...+|.+..++.+.++.++..++++|..++.
T Consensus 308 ~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~ 353 (588)
T 1b3u_A 308 FCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP 353 (588)
T ss_dssp HHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHH
T ss_pred HHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9875443222222334567888888888888888888877766654
No 50
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.34 E-value=8e-11 Score=119.50 Aligned_cols=266 Identities=15% Similarity=0.075 Sum_probs=184.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHh--cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh--
Q 048113 4 MLMDNLLNGERETQIQAANELGKLSRRQKHKLVE--RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK-- 79 (339)
Q Consensus 4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~-- 79 (339)
.++..+.++++++|..|+++|..++......+.. .++++.++..+++.+++++..|+..+..++.. +..+..+..
T Consensus 219 ~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~-~~~~~~~~~~~ 297 (852)
T 4fdd_A 219 NLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQ-PICKDVLVRHL 297 (852)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS-TTHHHHHTTTH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 4566677899999999999999999873232322 35788888888889999999999999999983 433332211
Q ss_pred cCChHHHHHhh-----------cC-----------CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCC
Q 048113 80 SGIVPVLLEVL-----------QC-----------QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLAD 137 (339)
Q Consensus 80 ~g~i~~Lv~lL-----------~~-----------~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 137 (339)
...+|.++..+ .. .+..++..|..+|..++...+. .+ -...++.+...+.+
T Consensus 298 ~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~-~~~l~~~l~~~l~~---- 370 (852)
T 4fdd_A 298 PKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--EL-LPHILPLLKELLFH---- 370 (852)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG--GG-HHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--HH-HHHHHHHHHHHhcC----
Confidence 13466666666 22 1124688888999888853321 11 12467788888877
Q ss_pred CCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhh--hHHHH
Q 048113 138 DDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDA--LQEIA 215 (339)
Q Consensus 138 ~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~--~~~i~ 215 (339)
.++.++..|+.+|.+++........-.-.++++.++..+.+. +..++..|+.+++ .++..-.. .....
T Consensus 371 -------~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~--~~~Vr~~a~~~l~-~l~~~~~~~~~~~~~ 440 (852)
T 4fdd_A 371 -------HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK--KALVRSITCWTLS-RYAHWVVSQPPDTYL 440 (852)
T ss_dssp -------SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCS--SHHHHHHHHHHHH-HTHHHHHHSCTTTTH
T ss_pred -------CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHH-HHHHHhccchHHHHH
Confidence 789999999999999987543211111236788888888774 5789999999999 55532111 11122
Q ss_pred hhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113 216 ATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 216 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 291 (339)
.+.++.|++.+.++++.++..|+++|.+++...+......+ .+.++.|+..+..........+..++..+..
T Consensus 441 --~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~ 512 (852)
T 4fdd_A 441 --KPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLAD 512 (852)
T ss_dssp --HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 25778888889888999999999999999865333221211 3577888888887777776667777777764
No 51
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.29 E-value=3.1e-11 Score=117.62 Aligned_cols=181 Identities=12% Similarity=0.113 Sum_probs=131.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI 82 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~ 82 (339)
+.+...|.+.++.+|.+|+.++.++...+...+.+.+.++.+..+|+++++.++..|+.+|..++.++++....-...+.
T Consensus 124 ~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~ 203 (591)
T 2vgl_B 124 EPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQN 203 (591)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHH
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHH
Confidence 34778888999999999999999998753333344578899999999999999999999999999965543211112245
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113 83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST 162 (339)
Q Consensus 83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~ 162 (339)
++.|+..+...++-.+...+.++..+...++.. ....++.+..++++ .++.++..|++++.++..
T Consensus 204 ~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~-----------~~~~V~~ea~~~i~~l~~ 268 (591)
T 2vgl_B 204 INKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSH-----------ANSAVVLSAVKVLMKFLE 268 (591)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCS-----------STTHHHHHHHHHHHHSCC
T ss_pred HHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcC-----------CChHHHHHHHHHHHHHhh
Confidence 677888887788888888888777766432211 23467788888887 788999999999999874
Q ss_pred ----CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHH
Q 048113 163 ----CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLEN 202 (339)
Q Consensus 163 ----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n 202 (339)
+++....+. ..+.+.|+.++.+ +..++..++.+|..
T Consensus 269 ~~~~~~~~~~~~~-~~~~~~L~~L~~~---d~~vr~~aL~~l~~ 308 (591)
T 2vgl_B 269 LLPKDSDYYNMLL-KKLAPPLVTLLSG---EPEVQYVALRNINL 308 (591)
T ss_dssp SCCBTTBSHHHHH-HHTHHHHHHHTTS---CHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHH-HHHHHHHHHHhcC---CccHHHHHHHHHHH
Confidence 233333332 3456777766642 47888888888883
No 52
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.26 E-value=2e-10 Score=116.33 Aligned_cols=314 Identities=10% Similarity=0.121 Sum_probs=205.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHh--cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchh-hHHhh
Q 048113 4 MLMDNLLNGERETQIQAANELGKLSRR-QKHKLVE--RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNK-IRIVK 79 (339)
Q Consensus 4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~-~~i~~ 79 (339)
.+...+.+.+|..|..|+.++..++.. ....+.. ..+++.++..+++.++.+|..++++++.++...+..- ..-.-
T Consensus 373 ~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 452 (861)
T 2bpt_A 373 FVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL 452 (861)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH
T ss_pred HHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH
Confidence 455666788999999999999999864 2222211 3578888999999999999999999999987321110 00011
Q ss_pred cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc------cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHH
Q 048113 80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL------ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDA 153 (339)
Q Consensus 80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~------~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a 153 (339)
...+|.++..+.++ +.++..+++++.+++..- .....+ ...++.|++.+.+.+ .+..++..+
T Consensus 453 ~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d---------~~~~vr~~a 520 (861)
T 2bpt_A 453 PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRID---------NEFNARASA 520 (861)
T ss_dssp HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSC---------CGGGHHHHH
T ss_pred HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcC---------cchHHHHHH
Confidence 24578888888775 889999999999987521 112222 356888888887521 346789999
Q ss_pred HHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhcc-------------ccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCC
Q 048113 154 IATLHNLST-CHQLISPIVSSGVTYCLLQLIHSS-------------EKSSGLTEKAIALLENIVSSSEDALQEIAATCG 219 (339)
Q Consensus 154 ~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~-------------~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g 219 (339)
+.+|..+.. .++....... ..++.+++.+.+. +....++..++.+|.+.+...+....... ..
T Consensus 521 ~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~ 597 (861)
T 2bpt_A 521 FSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DM 597 (861)
T ss_dssp HHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HH
T ss_pred HHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HH
Confidence 999999976 3332222222 3666777776532 11234666788888844433333222222 24
Q ss_pred cHHHHHHHhhcCCh-HHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcch
Q 048113 220 AIRALVETIEEGSP-QCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSR 298 (339)
Q Consensus 220 ~i~~Lv~lL~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~ 298 (339)
.++.++..+++.+. .+++.+..++..++...+......+- ..+|.|.+.+.+.++.++..|..++..+...... .
T Consensus 598 l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~--~ 673 (861)
T 2bpt_A 598 LMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE--TFSPYLLKALNQVDSPVSITAVGFIADISNSLEE--D 673 (861)
T ss_dssp HHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG--G
T ss_pred HHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhch--h
Confidence 67788888888766 88999999998887654333333332 3788899888888888999999999888765321 2
Q ss_pred hhhhhhHHHHHHHHHHHhcC--cccchHHHHHHHHHHHHh
Q 048113 299 SKQLKNELVEQIMQEIDAEG--DTVAGTTLRLVEEMIAKL 336 (339)
Q Consensus 299 ~~~~~~~~~~~i~~~~~~~~--~~~~~~a~~~l~~~v~~~ 336 (339)
........+..++..+.... .+++..|...+..++...
T Consensus 674 ~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~ 713 (861)
T 2bpt_A 674 FRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNI 713 (861)
T ss_dssp GHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHh
Confidence 22223444444444443222 557778888888777654
No 53
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.25 E-value=1.1e-10 Score=109.60 Aligned_cols=272 Identities=14% Similarity=0.105 Sum_probs=186.4
Q ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHHHHHH-HHHHH--hcCChHHHHHHhccC--CHHHHHHHHHHHHHhccCCcchhh
Q 048113 3 EMLMDNLLNG--ERETQIQAANELGKLSRRQ-KHKLV--ERGIIAPLISMLCSQ--DYEAIEAALLSLLSLACGSERNKI 75 (339)
Q Consensus 3 ~~Lv~~L~s~--~~~~~~~a~~~L~~l~~~~-~~~i~--~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~~~~~ 75 (339)
+.|+..+.++ ++..+..|+.+|..++... ...+. -..+++.+...++++ ++.+|..|++++.++....+.+-.
T Consensus 131 ~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~ 210 (462)
T 1ibr_B 131 PQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFD 210 (462)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHT
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4577788888 9999999999999999862 11111 134777888888887 799999999999987652121110
Q ss_pred -HHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccc--hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHH
Q 048113 76 -RIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN--KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKID 152 (339)
Q Consensus 76 -~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~ 152 (339)
.....-.++.+...+.+++++++..++.+|..+...... ...+ ..+.++.++..++. .+..++..
T Consensus 211 ~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~-----------~~~~v~~~ 278 (462)
T 1ibr_B 211 KESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKS-----------DIDEVALQ 278 (462)
T ss_dssp SHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHC-----------SSHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC-----------CchHHHHH
Confidence 111111466677777788899999999999999853322 2222 11677888888877 78999999
Q ss_pred HHHHHHhhcCCC------------------CChHHHHh---cCcHHHHHHHhhcc-----ccCchHHHHHHHHHHHhhcC
Q 048113 153 AIATLHNLSTCH------------------QLISPIVS---SGVTYCLLQLIHSS-----EKSSGLTEKAIALLENIVSS 206 (339)
Q Consensus 153 a~~~L~nLs~~~------------------~~~~~i~~---~g~i~~Lv~ll~~~-----~~~~~~~~~a~~~L~n~l~~ 206 (339)
|+..+..++... .....+++ ...+|.+++.+.+. +++...+..|..+|. .++.
T Consensus 279 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~-~l~~ 357 (462)
T 1ibr_B 279 GIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLM-LLAT 357 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHH-HHHH
Confidence 999988887532 01111221 23566677777542 122467788888888 4443
Q ss_pred CHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchh-HHHHHHhcCChHHHHHhhhcCCHHHHHHHHHH
Q 048113 207 SEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDK-YRSSILKEGVMPGLLQLSVDGTWRAKNMARDL 285 (339)
Q Consensus 207 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~ 285 (339)
.-. ..+. ..+++.+...+.+++...++.|+.++..++.....+ .... -..++|.++..+.+.++.+|..|+++
T Consensus 358 ~~~--~~~~--~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~--l~~~~~~l~~~l~d~~~~Vr~~a~~~ 431 (462)
T 1ibr_B 358 CCE--DDIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL--VIQAMPTLIELMKDPSVVVRDTAAWT 431 (462)
T ss_dssp HTT--TTHH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT--TTTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred hcc--HHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 221 1233 246777778888888999999999999999754321 1111 15689999999999999999999999
Q ss_pred HHHHhccC
Q 048113 286 LLLLRDCS 293 (339)
Q Consensus 286 L~~l~~~~ 293 (339)
|..++..-
T Consensus 432 l~~~~~~~ 439 (462)
T 1ibr_B 432 VGRICELL 439 (462)
T ss_dssp HHHHHHHG
T ss_pred HHHHHHhc
Confidence 99998743
No 54
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.21 E-value=3.9e-09 Score=106.99 Aligned_cols=315 Identities=13% Similarity=0.092 Sum_probs=206.3
Q ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHHHHH-HHHHHHh--cCChHHHHHHhccC--CHHHHHHHHHHHHHhccCCcchh-
Q 048113 3 EMLMDNLLNG--ERETQIQAANELGKLSRR-QKHKLVE--RGIIAPLISMLCSQ--DYEAIEAALLSLLSLACGSERNK- 74 (339)
Q Consensus 3 ~~Lv~~L~s~--~~~~~~~a~~~L~~l~~~-~~~~i~~--~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~~~~- 74 (339)
+.|+..+.++ ++..|..++.++..++.. ....+.. ..+++.+...+.++ ++.+|..|++++..+...-+.+-
T Consensus 131 ~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~ 210 (876)
T 1qgr_A 131 PQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFD 210 (876)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHT
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888 999999999999999976 3333332 44667777778776 68999999999999876322211
Q ss_pred hHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc-c-hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHH
Q 048113 75 IRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE-N-KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKID 152 (339)
Q Consensus 75 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~-~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~ 152 (339)
........++.+...+.+++++++..++.+|..+..... . ... .....++.++..+.+ .++.++..
T Consensus 211 ~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~l~~~~~~~~~~-----------~~~~v~~~ 278 (876)
T 1qgr_A 211 KESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETY-MGPALFAITIEAMKS-----------DIDEVALQ 278 (876)
T ss_dssp SHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHH-HTTTHHHHHHHHHTC-----------SSHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHhcC-----------CchHHHHH
Confidence 111112357777778878888999999999999985332 2 222 233678888887776 78899999
Q ss_pred HHHHHHhhcCCC-------------------CChHHHH--hcCcHHHHHHHhhcc-----ccCchHHHHHHHHHHHhhcC
Q 048113 153 AIATLHNLSTCH-------------------QLISPIV--SSGVTYCLLQLIHSS-----EKSSGLTEKAIALLENIVSS 206 (339)
Q Consensus 153 a~~~L~nLs~~~-------------------~~~~~i~--~~g~i~~Lv~ll~~~-----~~~~~~~~~a~~~L~n~l~~ 206 (339)
|+..+.+++... .....+. -...++.+++.+... +++...+..|..+|. .++.
T Consensus 279 al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~-~l~~ 357 (876)
T 1qgr_A 279 GIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLM-LLAT 357 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHH-HHHH
Confidence 999988886531 0001110 023566777777532 123467777777777 4543
Q ss_pred CHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHH
Q 048113 207 SEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLL 286 (339)
Q Consensus 207 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L 286 (339)
... ..+. ..+++.+...+.+.+..+++.++.++..++....++..... -...+|.|+..+.+.++.++..|+++|
T Consensus 358 ~~~--~~~~--~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l 432 (876)
T 1qgr_A 358 CCE--DDIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTV 432 (876)
T ss_dssp HHG--GGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HCc--HhhH--HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 221 1223 24667777778888899999999999999976542211111 234899999999999999999999999
Q ss_pred HHHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHHHHh
Q 048113 287 LLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIAKL 336 (339)
Q Consensus 287 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v~~~ 336 (339)
..++............-...++.++..+ .+..+++..|...+..++...
T Consensus 433 ~~~~~~~~~~~~~~~~l~~~l~~l~~~l-~~~~~v~~~a~~al~~l~~~~ 481 (876)
T 1qgr_A 433 GRICELLPEAAINDVYLAPLLQCLIEGL-SAEPRVASNVCWAFSSLAEAA 481 (876)
T ss_dssp HHHHHHCGGGTSSTTTHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCchhcccHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHh
Confidence 9998753210001122334445444443 233556666777777776543
No 55
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.17 E-value=3.6e-10 Score=111.85 Aligned_cols=208 Identities=12% Similarity=0.126 Sum_probs=150.6
Q ss_pred cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHH-hhcCCChhHHHHHHHHHHHHhcC--ccc
Q 048113 38 RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLE-VLQCQSTTLIELTVAAMLILSSC--LEN 114 (339)
Q Consensus 38 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~nLs~~--~~~ 114 (339)
.+.|.++++.|++++++.|..|+.+|.+|+. ++..+..+...|+|+.++. +|.+++.+++..|+++|.||+.. .+.
T Consensus 33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 3456678888999999999999999999998 7999999999999887654 78888999999999999999964 355
Q ss_pred hHHHHhcchHHHHHHHhcCCCC-CCCC--ccCCC-------CHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHh
Q 048113 115 KLEIASSGAIQRLVEILNGDLA-DDDN--SYGRI-------SVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLI 183 (339)
Q Consensus 115 ~~~i~~~g~i~~Lv~ll~~~~~-~~~~--~~~~~-------~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll 183 (339)
+..+...|++++|..++++... .... ..... -.++..+++.+|++||. +++....+...|.++.|+..|
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 7788899999999999864200 0000 00000 12355678899999987 556667888889999999998
Q ss_pred hcccc-CchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHH--HHHHHhhcCChHHHHHHHHHHHHhh
Q 048113 184 HSSEK-SSGLTEKAIALLENIVSSSEDALQEIAATCGAIR--ALVETIEEGSPQCKEHAVAILLLIC 247 (339)
Q Consensus 184 ~~~~~-~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~--~Lv~lL~~~~~~~~~~a~~~L~~l~ 247 (339)
.+.+. ..++...|+.+|.+....+++....+.+ .+... .++..+...+...+..++++|.|+.
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~-~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSEDNLKVGQAITD-DQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHT-CCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHh-cchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 65432 3578899999999433445566666665 45322 2222233344455677889999874
No 56
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.16 E-value=2.7e-10 Score=112.71 Aligned_cols=197 Identities=11% Similarity=0.066 Sum_probs=148.7
Q ss_pred CChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHH-HhcCCCCCCCCccCCCCHHHHHHHHHHHHh
Q 048113 81 GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVE-ILNGDLADDDNSYGRISVQAKIDAIATLHN 159 (339)
Q Consensus 81 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~-ll~~~~~~~~~~~~~~~~~~~~~a~~~L~n 159 (339)
+.+.+++..|+++++..|..|+++|.||+.++..+..+...++|..++. +|.+ .+.+++..|+++|.|
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D-----------~~~~Vr~~A~gaLrn 102 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTD-----------NNIDSRAAGWEILKV 102 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTC-----------SCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCC-----------CCHHHHHHHHHHHHH
Confidence 3455677889999999999999999999998888888888998888765 5666 799999999999999
Q ss_pred hcCC--CCChHHHHhcCcHHHHHHHhhcccc------------C-------chHHHHHHHHHHHhhcCCHhhhHHHHhhC
Q 048113 160 LSTC--HQLISPIVSSGVTYCLLQLIHSSEK------------S-------SGLTEKAIALLENIVSSSEDALQEIAATC 218 (339)
Q Consensus 160 Ls~~--~~~~~~i~~~g~i~~Lv~ll~~~~~------------~-------~~~~~~a~~~L~n~l~~~~~~~~~i~~~~ 218 (339)
|+.. .+.+..++..|++++|..+++.... . ..+...++.+|.+++....+....+.. .
T Consensus 103 L~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~-~ 181 (684)
T 4gmo_A 103 LAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT-K 181 (684)
T ss_dssp HHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT-C
T ss_pred HHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh-c
Confidence 9874 4678899999999999999865210 0 123456677777433445666667776 7
Q ss_pred CcHHHHHHHhhcC---ChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHh--hhcCCHHHHHHHHHHHHHHh
Q 048113 219 GAIRALVETIEEG---SPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQL--SVDGTWRAKNMARDLLLLLR 290 (339)
Q Consensus 219 g~i~~Lv~lL~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~l--l~~~~~~~~~~A~~~L~~l~ 290 (339)
+.++.|+..|.+. ...++..|+.+|..++.++.+ ..+.+.+.+....+..+ +...+...+..++++|.|+.
T Consensus 182 ~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~-~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 182 QTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLK-VGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHH-HHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 9999999988643 367899999999999988754 66777776644332222 23344445778889998875
No 57
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.15 E-value=4.5e-09 Score=102.84 Aligned_cols=261 Identities=13% Similarity=0.106 Sum_probs=173.4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChH
Q 048113 5 LMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVP 84 (339)
Q Consensus 5 Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~ 84 (339)
|.+-|.++++.+|..|+++|+++... . + -..+++.+..+|++.++.+|..|+.++.++...+|+... +.++
T Consensus 112 l~kDL~~~n~~vr~lAL~~L~~i~~~--~-~-~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~ 182 (618)
T 1w63_A 112 IKNDLNHSTQFVQGLALCTLGCMGSS--E-M-CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLP 182 (618)
T ss_dssp HHHHHSCSSSHHHHHHHHHHHHHCCH--H-H-HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGG
T ss_pred HHHhcCCCCHhHHHHHHHHHHhcCCH--H-H-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHH
Confidence 55667788999999999999888743 1 1 135678888999999999999999999999986554332 6788
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHhcCccc-hHHHHhcchHHHHHHHhcCCC---CCCCCc-cCCCCHHHHHHHHHHHHh
Q 048113 85 VLLEVLQCQSTTLIELTVAAMLILSSCLEN-KLEIASSGAIQRLVEILNGDL---ADDDNS-YGRISVQAKIDAIATLHN 159 (339)
Q Consensus 85 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~-~~~i~~~g~i~~Lv~ll~~~~---~~~~~~-~~~~~~~~~~~a~~~L~n 159 (339)
.+..+|.+.++.++..|+.+|..++..++. ...+ ...+|.++++|.+.. .-.+.. .+..++-.+...+.+|..
T Consensus 183 ~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~ 260 (618)
T 1w63_A 183 ATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRI 260 (618)
T ss_dssp GTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHH
Confidence 888999999999999999999999865432 1122 256888888775310 000000 112478888889999999
Q ss_pred hcCCCCChHHHHhcCcHHHHHHHhhccc----cCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHH
Q 048113 160 LSTCHQLISPIVSSGVTYCLLQLIHSSE----KSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQC 235 (339)
Q Consensus 160 Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~----~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~ 235 (339)
++..+... .....+.|..++...+ .+..+...|+.++. .+...+. +.. .++..|..++.++++.+
T Consensus 261 l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~-~l~~~~~----l~~--~a~~~L~~~L~~~d~~v 329 (618)
T 1w63_A 261 LGRNDDDS----SEAMNDILAQVATNTETSKNVGNAILYETVLTIM-DIKSESG----LRV--LAINILGRFLLNNDKNI 329 (618)
T ss_dssp HTTTCHHH----HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHH-HSCCCHH----HHH--HHHHHHHHHHTCSSTTT
T ss_pred hCCCCHHH----HHHHHHHHHHHHhccccccchHHHHHHHHHHHHH-hcCCCHH----HHH--HHHHHHHHHHhCCCCch
Confidence 88643211 1234455555553211 12356666777777 4544332 221 35677777787777888
Q ss_pred HHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccC
Q 048113 236 KEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCS 293 (339)
Q Consensus 236 ~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 293 (339)
+..|+.+|..++...+ .+. ....+.++..+.+.+..++..|..+|..+.+..
T Consensus 330 r~~aL~~L~~i~~~~p-----~~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~ 381 (618)
T 1w63_A 330 RYVALTSLLKTVQTDH-----NAV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGN 381 (618)
T ss_dssp HHHHHHHHHHHHHHHH-----HHH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHhhCH-----HHH-HHHHHHHHHHccCCChhHHHHHHHHHHHHcccc
Confidence 8888888887775421 112 124556666777777777777777777776654
No 58
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.14 E-value=6e-09 Score=101.97 Aligned_cols=292 Identities=12% Similarity=0.105 Sum_probs=199.3
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113 2 EEMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSG 81 (339)
Q Consensus 2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g 81 (339)
.+.+...|.+.++.+|.+|+.++.++...+...+ .+.++.+..+|.+.++.++..|+.+|..++..+++....+ ..
T Consensus 144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v--~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~ 219 (618)
T 1w63_A 144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM--EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RK 219 (618)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG--GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH--HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HH
Confidence 3567888899999999999999999988633222 2678888889999999999999999999998544432223 25
Q ss_pred ChHHHHHhhcC---------------CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCC
Q 048113 82 IVPVLLEVLQC---------------QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRIS 146 (339)
Q Consensus 82 ~i~~Lv~lL~~---------------~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~ 146 (339)
.+|.++.+|.+ +++-.+...+.+|..+...++.. .....+.|..++.... ...+.+
T Consensus 220 ~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~-----~~~~~~ 290 (618)
T 1w63_A 220 LVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS----SEAMNDILAQVATNTE-----TSKNVG 290 (618)
T ss_dssp THHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSC-----CSSTHH
T ss_pred HHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccc-----cccchH
Confidence 78888887753 36778888889999988654321 1224555555554210 000035
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHH
Q 048113 147 VQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVE 226 (339)
Q Consensus 147 ~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~ 226 (339)
..+...|++++.++...+. +.. .+++.|..++.+. +..++..|+.+|. .+... ....+. ...+.++.
T Consensus 291 ~aV~~ea~~~i~~l~~~~~----l~~-~a~~~L~~~L~~~--d~~vr~~aL~~L~-~i~~~---~p~~~~--~~~~~i~~ 357 (618)
T 1w63_A 291 NAILYETVLTIMDIKSESG----LRV-LAINILGRFLLNN--DKNIRYVALTSLL-KTVQT---DHNAVQ--RHRSTIVD 357 (618)
T ss_dssp HHHHHHHHHHHHHSCCCHH----HHH-HHHHHHHHHHTCS--STTTHHHHHHHHH-HHHHH---HHHHHG--GGHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHH----HHH-HHHHHHHHHHhCC--CCchHHHHHHHHH-HHHhh---CHHHHH--HHHHHHHH
Confidence 6788899999998754322 222 4678888888874 5788999999998 44432 223443 46778889
Q ss_pred HhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHH
Q 048113 227 TIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNEL 306 (339)
Q Consensus 227 lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~ 306 (339)
.+.+++..++..|+.+|..++.... . .. .++.|.+.+.+.+...+..+...+..++..-. . .....
T Consensus 358 ~l~d~d~~Ir~~alelL~~l~~~~n--v-~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~--~----~~~~~ 423 (618)
T 1w63_A 358 CLKDLDVSIKRRAMELSFALVNGNN--I-RG-----MMKELLYFLDSCEPEFKADCASGIFLAAEKYA--P----SKRWH 423 (618)
T ss_dssp GGGSSCHHHHHHHHHHHHHHCCSSS--T-HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSC--C----CHHHH
T ss_pred HccCCChhHHHHHHHHHHHHccccc--H-HH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC--c----cHHHH
Confidence 9999999999999999999986532 2 22 35778888888999999999999988876321 0 11233
Q ss_pred HHHHHHHHHhcCcccchHHHHHHHHHH
Q 048113 307 VEQIMQEIDAEGDTVAGTTLRLVEEMI 333 (339)
Q Consensus 307 ~~~i~~~~~~~~~~~~~~a~~~l~~~v 333 (339)
+..++..+...|+.++..+-..+..++
T Consensus 424 v~~ll~lL~~~~~~v~~~~~~~l~~ii 450 (618)
T 1w63_A 424 IDTIMRVLTTAGSYVRDDAVPNLIQLI 450 (618)
T ss_dssp HHHHHHHHHHTGGGSCSSHHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 444444444445444444444444443
No 59
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.13 E-value=1.7e-09 Score=109.55 Aligned_cols=315 Identities=11% Similarity=0.102 Sum_probs=197.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHH--HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchh-hHHhh
Q 048113 4 MLMDNLLNGERETQIQAANELGKLSRR-QKHKL--VERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNK-IRIVK 79 (339)
Q Consensus 4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i--~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~-~~i~~ 79 (339)
.+...+.+.+|.+|..|+.++..++.+ ....+ .-..+++.++..++++++.+|..|+++|.+++...+..- ..-.-
T Consensus 370 ~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l 449 (876)
T 1qgr_A 370 FIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL 449 (876)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH
T ss_pred HHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH
Confidence 455667789999999999999998865 21111 124578899999999999999999999999998533210 00011
Q ss_pred cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc----------------chHHHHhcchHHHHHHHhcCCCCCCCCccC
Q 048113 80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE----------------NKLEIASSGAIQRLVEILNGDLADDDNSYG 143 (339)
Q Consensus 80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~----------------~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~ 143 (339)
...++.|+..+.++ +.++..++++|.+++..-. ....+ ...++.|+..+.....
T Consensus 450 ~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~------- 519 (876)
T 1qgr_A 450 APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDG------- 519 (876)
T ss_dssp HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSS-------
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCc-------
Confidence 24677888888775 8899999999999884311 11111 3578888888876310
Q ss_pred CCCHHHHHHHHHHHHhhcCC-CCChHHHHhcCcHHHHHHHhhcc---------ccC----chHHHHHHHHHHHhhcCCH-
Q 048113 144 RISVQAKIDAIATLHNLSTC-HQLISPIVSSGVTYCLLQLIHSS---------EKS----SGLTEKAIALLENIVSSSE- 208 (339)
Q Consensus 144 ~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~---------~~~----~~~~~~a~~~L~n~l~~~~- 208 (339)
++..++..++.++..+... +....... ...++.++..+... +.+ .+++..++.++...+...+
T Consensus 520 -~~~~~r~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~ 597 (876)
T 1qgr_A 520 -HQNNLRSSAYESLMEIVKNSAKDCYPAV-QKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH 597 (876)
T ss_dssp -CSTTHHHHHHHHHHHHHHTCCSTTHHHH-HHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCH
T ss_pred -chhhHHHHHHHHHHHHHHHCchhhHHHH-HHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 2346777888888888653 33222222 24566666665531 111 2345667777773333333
Q ss_pred hhhHHHHhhCCcHHHHHHHhhcCC--hHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcC-CHHHHHHHHHH
Q 048113 209 DALQEIAATCGAIRALVETIEEGS--PQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDG-TWRAKNMARDL 285 (339)
Q Consensus 209 ~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~A~~~ 285 (339)
....... ...++.++.++++.+ ..+++.++.++..++...+......+- ..+|.|...+.+. ++.++..|.++
T Consensus 598 ~~~~~~~--~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~vr~~a~~~ 673 (876)
T 1qgr_A 598 QDALQIS--DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME--AFKPFLGIGLKNYAEYQVCLAAVGL 673 (876)
T ss_dssp HHHHTTH--HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH--HHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred hhhhHHH--HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHcCcchHHHHHHHHHH
Confidence 2222233 246788888888754 478899999998887643222222222 3678888888886 89999999999
Q ss_pred HHHHhccCCCcchhhhhhhHHHHHHHHHHHh--cCcccchHHHHHHHHHHHHh
Q 048113 286 LLLLRDCSSFGSRSKQLKNELVEQIMQEIDA--EGDTVAGTTLRLVEEMIAKL 336 (339)
Q Consensus 286 L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~a~~~l~~~v~~~ 336 (339)
+..|...... +-.......+..++..+.. ...+++..+...+..++..+
T Consensus 674 l~~l~~~~~~--~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~ 724 (876)
T 1qgr_A 674 VGDLCRALQS--NIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAI 724 (876)
T ss_dssp HHHHHHHHGG--GGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHh
Confidence 9888764320 1112224444444444432 13467778888888877654
No 60
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.13 E-value=3.1e-09 Score=99.56 Aligned_cols=310 Identities=13% Similarity=0.117 Sum_probs=198.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccC--CHHHHHHHHHHHHHhccCC-cchhhHHhh
Q 048113 4 MLMDNLLNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQ--DYEAIEAALLSLLSLACGS-ERNKIRIVK 79 (339)
Q Consensus 4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~-~~~~~~i~~ 79 (339)
.|+..|.+.++.+ ..++.++..++.. ... -...+.++.|+..+.++ ++..+..|+.+|..++... +..-... -
T Consensus 94 ~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~-~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~ 170 (462)
T 1ibr_B 94 YVLQTLGTETYRP-SSASQCVAGIACAEIPV-NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-S 170 (462)
T ss_dssp HHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG-TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-H
T ss_pred HHHHHhCCCCchh-hHHHHHHHHHHHHhccc-cccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-H
Confidence 4566677777677 7788888888765 221 01367888899999888 8999999999999999732 2211111 1
Q ss_pred cCChHHHHHhhcCC--ChhHHHHHHHHHHHHhcCcc-c-hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHH
Q 048113 80 SGIVPVLLEVLQCQ--STTLIELTVAAMLILSSCLE-N-KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIA 155 (339)
Q Consensus 80 ~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~-~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~ 155 (339)
...++.++..+.++ ++.++..|+.++.++...-. . .......-.++.+...+.+ .+..++..++.
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----------~~~~vr~~~~~ 239 (462)
T 1ibr_B 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC-----------PDTRVRVAALQ 239 (462)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC-----------SSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-----------CCHHHHHHHHH
Confidence 24678888999887 78999999999998764211 1 0001111245666666665 78999999999
Q ss_pred HHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHH------------------HHh
Q 048113 156 TLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQE------------------IAA 216 (339)
Q Consensus 156 ~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~------------------i~~ 216 (339)
+|..++. .++.-......++++.++..+++. ++.++..++..+. .++........ +.+
T Consensus 240 ~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~v~~~a~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (462)
T 1ibr_B 240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSD--IDEVALQGIEFWS-NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAK 316 (462)
T ss_dssp HHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS--SHHHHHHHHHHHH-HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--chHHHHHHHHHHH-HHHHHHHHHHHhcccccccCCCccchhHHHHH
Confidence 9999975 322111112225677777777663 5788888888877 45433211000 100
Q ss_pred --hCCcHHHHHHHhhc-------CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHH
Q 048113 217 --TCGAIRALVETIEE-------GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLL 287 (339)
Q Consensus 217 --~~g~i~~Lv~lL~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~ 287 (339)
-...+|.+++.+.. ++..++..|+.+|..++...+... . ..++|.+.+.+.+.++..|..|+.++.
T Consensus 317 ~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~----~-~~~~~~l~~~l~~~~~~~r~aal~~l~ 391 (462)
T 1ibr_B 317 GALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI----V-PHVLPFIKEHIKNPDWRYRDAAVMAFG 391 (462)
T ss_dssp HHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH----H-HHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHH----H-HHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 01355666666643 234678889999999886543211 1 246778888888999999999999999
Q ss_pred HHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHHHHh
Q 048113 288 LLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIAKL 336 (339)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v~~~ 336 (339)
.++.+.... .-...-...++.++..+.-....++..|...|..+...+
T Consensus 392 ~l~~~~~~~-~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 392 CILEGPEPS-QLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HTSSSSCTT-TTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HHhcCCcHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 998754310 111122344554444443233567888888888887655
No 61
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.13 E-value=2.9e-09 Score=107.71 Aligned_cols=303 Identities=12% Similarity=0.139 Sum_probs=192.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCc-chhhHHhhcCChHHHHHhhc
Q 048113 13 ERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSE-RNKIRIVKSGIVPVLLEVLQ 91 (339)
Q Consensus 13 ~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~-~~~~~i~~~g~i~~Lv~lL~ 91 (339)
++..|..|..+|..++......+. ...++.+...+.+.+...++.|+.+++.++.+.. ..-.... ...++.++..+.
T Consensus 344 ~~~~r~~a~~~L~~l~~~~~~~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~ 421 (861)
T 2bpt_A 344 DWNVSMSAGACLQLFAQNCGNHIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMN 421 (861)
T ss_dssp CCHHHHHHHHHHHHHHHHHGGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGG
T ss_pred cCcHHHHHHHHHHHHHHHccHhHH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcC
Confidence 467899999999999876211111 2345566667778899999999999999998532 2111122 247888999999
Q ss_pred CCChhHHHHHHHHHHHHhcCccch--HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-C----
Q 048113 92 CQSTTLIELTVAAMLILSSCLENK--LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-H---- 164 (339)
Q Consensus 92 ~~~~~~~~~a~~~L~nLs~~~~~~--~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~---- 164 (339)
++++.++..+++++..++..-... ..-.-...++.+++.+++ . +.++..|+++|.+++.. .
T Consensus 422 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~-----------~-~~v~~~a~~al~~l~~~~~~~~~ 489 (861)
T 2bpt_A 422 DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD-----------H-PKVATNCSWTIINLVEQLAEATP 489 (861)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS-----------C-HHHHHHHHHHHHHHHHHHSSSSS
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc-----------C-hHHHHHHHHHHHHHHHhcccccc
Confidence 899999999999999988531110 000123467888888866 4 88999999999998763 1
Q ss_pred CChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC-------------
Q 048113 165 QLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEG------------- 231 (339)
Q Consensus 165 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~------------- 231 (339)
+...... ..+++.|++.+.+.+.+..++..++.+++......+........ ..++.+++.+...
T Consensus 490 ~~l~~~~-~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~i~~~~~~ 566 (861)
T 2bpt_A 490 SPIYNFY-PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA--SISTFVMDKLGQTMSVDENQLTLEDA 566 (861)
T ss_dssp CGGGGGH-HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH--HHHHHHHHHHHHHTTSCGGGCCHHHH
T ss_pred hhhHHHH-HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH--HHHHHHHHHHHHHHhhhcccCChhhH
Confidence 1111111 24577888888754333678888888888444334333333332 4667777776531
Q ss_pred --ChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCH-HHHHHHHHHHHHHhccCCCcchhhhhhhHHHH
Q 048113 232 --SPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTW-RAKNMARDLLLLLRDCSSFGSRSKQLKNELVE 308 (339)
Q Consensus 232 --~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~ 308 (339)
...++..++.+|..++...+......+ ...++.+...+.+.++ .+++.+..++..++..... .....-...++
T Consensus 567 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~--~~~~~l~~i~~ 642 (861)
T 2bpt_A 567 QSLQELQSNILTVLAAVIRKSPSSVEPVA--DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGK--GFEKYLETFSP 642 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGG--GGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhh--hHHHHHHHHHH
Confidence 345677888898888865443222111 2467778888888776 8889999988888764321 12122234444
Q ss_pred HHHHHHHhcCcccchHHHHHHHHHHHHh
Q 048113 309 QIMQEIDAEGDTVAGTTLRLVEEMIAKL 336 (339)
Q Consensus 309 ~i~~~~~~~~~~~~~~a~~~l~~~v~~~ 336 (339)
.++..+..+..+++..|..++..++..+
T Consensus 643 ~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 643 YLLKALNQVDSPVSITAVGFIADISNSL 670 (861)
T ss_dssp HHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 4444443334555666777776666543
No 62
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.11 E-value=1.1e-08 Score=99.58 Aligned_cols=254 Identities=12% Similarity=0.084 Sum_probs=180.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChH
Q 048113 5 LMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVP 84 (339)
Q Consensus 5 Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~ 84 (339)
++.++.+.+...|.-+.-++..++....+.. .-++..+.+.|+++++.+|..|+++|+++.. ++.... .++
T Consensus 54 vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~--~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~--~~~~~~-----l~~ 124 (591)
T 2vgl_B 54 VVNCMQTDNLELKKLVYLYLMNYAKSQPDMA--IMAVNSFVKDCEDPNPLIRALAVRTMGCIRV--DKITEY-----LCE 124 (591)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH--HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS--GGGHHH-----HHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHcccCchHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh--HHHHHH-----HHH
Confidence 5566678888888888777777766422221 2345677777888999999999999998874 333222 357
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCC
Q 048113 85 VLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCH 164 (339)
Q Consensus 85 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~ 164 (339)
.+.+++.++++.+|..|+.++.++....+. .+.+.+.++.+..+|.+ .++.++..|+.+|..++...
T Consensus 125 ~l~~~L~d~~~~VRk~A~~al~~i~~~~p~--~~~~~~~~~~l~~lL~d-----------~d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 125 PLRKCLKDEDPYVRKTAAVCVAKLHDINAQ--MVEDQGFLDSLRDLIAD-----------SNPMVVANAVAALSEISESH 191 (591)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHHSSCC--CHHHHHHHHHHHHTTSC-----------SCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHhhChh--hcccccHHHHHHHHhCC-----------CChhHHHHHHHHHHHHHhhC
Confidence 899999999999999999999999864332 23345789999999987 89999999999999998754
Q ss_pred -CChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHH
Q 048113 165 -QLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAIL 243 (339)
Q Consensus 165 -~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 243 (339)
+....-...+.+..|++.+.+. ++-.+...+.++. .+...++ ... ...++.+..++++.++.+...|+.++
T Consensus 192 ~~~~~~~l~~~~~~~Ll~~l~~~--~~~~q~~il~~l~-~l~~~~~---~~~--~~~l~~l~~~l~~~~~~V~~ea~~~i 263 (591)
T 2vgl_B 192 PNSNLLDLNPQNINKLLTALNEC--TEWGQIFILDCLS-NYNPKDD---REA--QSICERVTPRLSHANSAVVLSAVKVL 263 (591)
T ss_dssp CSCCSCCCHHHHHHHHHHHHHHC--CHHHHHHHHHHHH-TSCCCSH---HHH--HHHHHHHTTCSCSSTTHHHHHHHHHH
T ss_pred CCccchhccHHHHHHHHHcCCCC--CchHHHHHHHHHH-HhCCCCh---HHH--HHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 3211111124566777777654 3556677778888 5543321 111 24677788888888999999999999
Q ss_pred HHhhcc---CchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113 244 LLICKS---CRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 244 ~~l~~~---~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 291 (339)
..+... +++..+ .+ -..+.++|+.++. +++.+|..|+..|..+..
T Consensus 264 ~~l~~~~~~~~~~~~-~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~ 311 (591)
T 2vgl_B 264 MKFLELLPKDSDYYN-ML-LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQ 311 (591)
T ss_dssp HHSCCSCCBTTBSHH-HH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHH
T ss_pred HHHhhccCCCHHHHH-HH-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHH
Confidence 998742 222122 22 2346788887664 788999999998888865
No 63
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.86 E-value=3.3e-08 Score=104.14 Aligned_cols=227 Identities=15% Similarity=0.112 Sum_probs=155.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchh-----hHH
Q 048113 4 MLMDNLLNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNK-----IRI 77 (339)
Q Consensus 4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~-----~~i 77 (339)
.|+..|.+.++.+|..|+.+|..++.. .... -..+++.|+..+.++++.+|..|+.+|..++...+... ..-
T Consensus 52 ~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~--~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~ 129 (1230)
T 1u6g_C 52 MILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ--VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN 129 (1230)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH--HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHH--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHH
Confidence 466777889999999999999999875 2111 13466778888888888999999999999886432210 111
Q ss_pred hhcCChHHHHHhhc-CCChhHHHHHHHHHHHHhcC--ccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHH
Q 048113 78 VKSGIVPVLLEVLQ-CQSTTLIELTVAAMLILSSC--LENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAI 154 (339)
Q Consensus 78 ~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~ 154 (339)
.-...+|.|+..+. ++++..+..|+.++..++.. +..... -...++.++..+.+ .++.++..|+
T Consensus 130 ~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~--~~~ll~~l~~~L~~-----------~~~~vR~~a~ 196 (1230)
T 1u6g_C 130 VCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF--HPSILTCLLPQLTS-----------PRLAVRKRTI 196 (1230)
T ss_dssp HHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT--HHHHHHHHGGGGGC-----------SSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHHHcC-----------CcHHHHHHHH
Confidence 12357899999998 57889999999999998842 111111 14467778888877 6889999999
Q ss_pred HHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcC-CHhhhHHHHhhCCcHHHHHHHhhcCCh
Q 048113 155 ATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSS-SEDALQEIAATCGAIRALVETIEEGSP 233 (339)
Q Consensus 155 ~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~ 233 (339)
.+|..++...... + -...++.++..+.+.. +...+..++.++. .+.. .+..-.... ...++.+++.+.+.++
T Consensus 197 ~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~-~~~~r~~a~~~l~-~l~~~~~~~~~~~l--~~l~~~ll~~l~d~~~ 269 (1230)
T 1u6g_C 197 IALGHLVMSCGNI--V-FVDLIEHLLSELSKND-SMSTTRTYIQCIA-AISRQAGHRIGEYL--EKIIPLVVKFCNVDDD 269 (1230)
T ss_dssp HHHHHHTTTC-------CTTHHHHHHHHHHHTC-SSCSCTTHHHHHH-HHHHHSSGGGTTSC--TTHHHHHHHHHSSCCT
T ss_pred HHHHHHHHhcCHH--H-HHHHHHHHHHHhccCC-chhHHHHHHHHHH-HHHHHhHHHHHHHH--HHHHHHHHHHhcCCCH
Confidence 9999998643221 1 1246888888887642 2344555666666 3322 221111111 3678899999988888
Q ss_pred HHHHHHHHHHHHhhccCch
Q 048113 234 QCKEHAVAILLLICKSCRD 252 (339)
Q Consensus 234 ~~~~~a~~~L~~l~~~~~~ 252 (339)
.+++.++.++..++...+.
T Consensus 270 ~vR~~a~~~l~~l~~~~~~ 288 (1230)
T 1u6g_C 270 ELREYCIQAFESFVRRCPK 288 (1230)
T ss_dssp TTHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHChH
Confidence 8999999999888875443
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.83 E-value=1.3e-06 Score=85.40 Aligned_cols=264 Identities=13% Similarity=0.112 Sum_probs=174.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHh--ccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113 5 LMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISML--CSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI 82 (339)
Q Consensus 5 Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL--~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~ 82 (339)
+.+-|.++++.+|..|+++|+++.... .-..+++.+.+.| .+.++.+|..|+.++..+...+|+ .+...+.
T Consensus 116 l~kDl~~~n~~ir~lALr~L~~i~~~e----~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~---~~~~~~~ 188 (621)
T 2vgl_A 116 IKNDLASRNPTFMGLALHCIANVGSRE----MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD---LVPMGDW 188 (621)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHCCHH----HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG---GCCCCSC
T ss_pred HHHhcCCCCHHHHHHHHHHhhccCCHH----HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh---hcCchhH
Confidence 344567889999999999998886431 1235677888888 888999999999999999985443 2223588
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHH----HHhcCC-CCCCCCc-cCCCCHHHHHHHHHH
Q 048113 83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLV----EILNGD-LADDDNS-YGRISVQAKIDAIAT 156 (339)
Q Consensus 83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv----~ll~~~-~~~~~~~-~~~~~~~~~~~a~~~ 156 (339)
++.+..+|.++++.++..|+.++..++..++. .+ ...+|.++ +++... .+..+.. ++..++-.+...+..
T Consensus 189 ~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~l 264 (621)
T 2vgl_A 189 TSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRL 264 (621)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHH
T ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHH
Confidence 99999999988999999999999998864432 11 12344444 444321 0000000 112267788889999
Q ss_pred HHhhcCCC--CChHHHHhcCcHHHHHHHhhccc---------cCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHH
Q 048113 157 LHNLSTCH--QLISPIVSSGVTYCLLQLIHSSE---------KSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALV 225 (339)
Q Consensus 157 L~nLs~~~--~~~~~i~~~g~i~~Lv~ll~~~~---------~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv 225 (339)
|..++..+ +.+..+.+ .++.++..+.+.+ ....+...|..++. .+...++ +.. .++..|.
T Consensus 265 l~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~-~l~~~~~----~~~--~~~~~L~ 335 (621)
T 2vgl_A 265 LQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLII-HHDSEPN----LLV--RACNQLG 335 (621)
T ss_dssp GGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHH-HHCCCHH----HHH--HHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHH-hcCCcHH----HHH--HHHHHHH
Confidence 98887632 33333333 3444443332211 01256666777777 5553332 222 3667888
Q ss_pred HHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhh-cCCHHHHHHHHHHHHHHhcc
Q 048113 226 ETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSV-DGTWRAKNMARDLLLLLRDC 292 (339)
Q Consensus 226 ~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~A~~~L~~l~~~ 292 (339)
.++.++++.++..++.+|..++...+. ...+ ....+.++..+. +.++.++..|..+|..+.+.
T Consensus 336 ~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~ 399 (621)
T 2vgl_A 336 QFLQHRETNLRYLALESMCTLASSEFS--HEAV--KTHIETVINALKTERDVSVRQRAVDLLYAMCDR 399 (621)
T ss_dssp HHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH
T ss_pred HHhcCCCcchHHHHHHHHHHHHhccCc--HHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh
Confidence 889888899999999999999876532 1222 235677777777 88899999999999888754
No 65
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.79 E-value=9.3e-07 Score=86.37 Aligned_cols=262 Identities=13% Similarity=0.122 Sum_probs=173.7
Q ss_pred cHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113 2 EEMLMDNL--LNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK 79 (339)
Q Consensus 2 ~~~Lv~~L--~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~ 79 (339)
.+.+...| .+.++.+|.+|+-++..+...+...+...+.++.+.++|.+.++.++..|+.++..++..++...
T Consensus 148 ~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~----- 222 (621)
T 2vgl_A 148 AGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEF----- 222 (621)
T ss_dssp TTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHH-----
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHH-----
Confidence 45677888 78999999999999999988644444345899999999999999999999999999988544321
Q ss_pred cCChHHHHHhhc----CC-------------ChhHHHHHHHHHHHHhcCcc--chHHHHhcchHHHHHHHhcCCCCCCCC
Q 048113 80 SGIVPVLLEVLQ----CQ-------------STTLIELTVAAMLILSSCLE--NKLEIASSGAIQRLVEILNGDLADDDN 140 (339)
Q Consensus 80 ~g~i~~Lv~lL~----~~-------------~~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 140 (339)
...+|.+++.|. .+ ++-.+...+..|..+...++ .+..+. +.++.++..+.... .++
T Consensus 223 ~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~-ks~- 298 (621)
T 2vgl_A 223 KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPP-KSK- 298 (621)
T ss_dssp TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCC-SCS-
T ss_pred HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCc-ccc-
Confidence 123455554332 21 35577777777777664322 122221 23444443322100 000
Q ss_pred ccCCC--CHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhC
Q 048113 141 SYGRI--SVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATC 218 (339)
Q Consensus 141 ~~~~~--~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~ 218 (339)
...+. ...+...++.++..+...++... .++..|..++.+. +..++..++..|. .+....... ..+.
T Consensus 299 ~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~~--~~niry~aL~~l~-~l~~~~~~~-~~~~-- 367 (621)
T 2vgl_A 299 KVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQHR--ETNLRYLALESMC-TLASSEFSH-EAVK-- 367 (621)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSSCS--CHHHHHHHHHHHH-HHTTCTTTH-HHHH--
T ss_pred cccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhcCC--CcchHHHHHHHHH-HHHhccCcH-HHHH--
Confidence 00001 23788889999998863222111 3567788888753 5789999999999 555443222 2333
Q ss_pred CcHHHHHHHhh-cCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113 219 GAIRALVETIE-EGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 219 g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 291 (339)
.....++..|+ +++..++..++.+|..++.. . ..+. ++..|.+.+.+.+...+..++..+..++.
T Consensus 368 ~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~-Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 368 THIETVINALKTERDVSVRQRAVDLLYAMCDR--S-NAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAE 433 (621)
T ss_dssp TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--H-HHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--h-hHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 46788888888 88899999999999999854 2 2232 46677788888888888888887777763
No 66
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.63 E-value=2.7e-07 Score=79.16 Aligned_cols=174 Identities=16% Similarity=0.154 Sum_probs=131.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHh---cCChHHHHHHhc-cCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVE---RGIIAPLISMLC-SQDYEAIEAALLSLLSLACGSERNKIRIV 78 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~---~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~ 78 (339)
+.+.+.+.+.+|..|..|+..|..+...+.. +.. ..+++.|...+. +.+..++..|+.++..|+..-. ..+.
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~-~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~---~~~~ 93 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPK-LENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA---KRFS 93 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSS-BCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG---GGGH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCC-CCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh---hhHH
Confidence 4578889999999999999999999876111 111 234666777784 8899999999999999997321 1222
Q ss_pred --hcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHH
Q 048113 79 --KSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIAT 156 (339)
Q Consensus 79 --~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~ 156 (339)
-...+|.++..+.++.+.++..+..+|..+...... ...++.+...+++ .++.++..++..
T Consensus 94 ~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~-----------~~~~vr~~~l~~ 156 (242)
T 2qk2_A 94 NYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSN-----------KNPSVKSETALF 156 (242)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTC-----------SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcC-----------CChHHHHHHHHH
Confidence 124789999999999999999999999999865432 2367888898988 799999999999
Q ss_pred HHhhc-CC-CC--ChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHH
Q 048113 157 LHNLS-TC-HQ--LISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLE 201 (339)
Q Consensus 157 L~nLs-~~-~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~ 201 (339)
|..+. .. ++ ....+ . ..++.|+.++.+. ..+++..|..+++
T Consensus 157 l~~~l~~~~~~~~~~~~l-~-~l~p~l~~~l~D~--~~~VR~~A~~~l~ 201 (242)
T 2qk2_A 157 IARALTRTQPTALNKKLL-K-LLTTSLVKTLNEP--DPTVRDSSAEALG 201 (242)
T ss_dssp HHHHHTTCCGGGCCHHHH-H-HHHHHHHHHHTSS--CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCccHHHH-H-HHHHHHHHHhcCC--ChHHHHHHHHHHH
Confidence 99964 33 22 12222 2 5788899999764 5788999988888
No 67
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.59 E-value=5.3e-07 Score=94.99 Aligned_cols=272 Identities=12% Similarity=0.128 Sum_probs=176.3
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHh
Q 048113 41 IAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIAS 120 (339)
Q Consensus 41 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 120 (339)
++.|+.-+.+.|+++|..|...|.+....+...-..-.....++.|++.|.++++.+|..|+.+|.+++..-.. .. -
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~--~ 84 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQ--V 84 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HH--H
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HH--H
Confidence 55677778889999999999999887653211100011224678899999988999999999999999863322 11 1
Q ss_pred cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCC-----hHHHHhcCcHHHHHHHhhccccCchHHH
Q 048113 121 SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQL-----ISPIVSSGVTYCLLQLIHSSEKSSGLTE 194 (339)
Q Consensus 121 ~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~-----~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 194 (339)
...++.|+..+.+ .++.+|..|+.+|..++. .... ...-.-...+|.|+..+.+. ++...+.
T Consensus 85 ~~i~~~Ll~~l~d-----------~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~-~~~~~~~ 152 (1230)
T 1u6g_C 85 ETIVDTLCTNMLS-----------DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ-EDVSVQL 152 (1230)
T ss_dssp HHHHHHHHHHTTC-----------SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC-SCHHHHH
T ss_pred HHHHHHHHHHhcC-----------CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC-CchHHHH
Confidence 2357778888777 677889999999998865 2221 01112235788888888742 2568889
Q ss_pred HHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcC
Q 048113 195 KAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDG 274 (339)
Q Consensus 195 ~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~ 274 (339)
.|+.++.+.+...+..-.... ...++.++..+.++++.++..|+.++..++...+.. + -...++.|++.+.+.
T Consensus 153 ~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~----~-~~~~l~~l~~~L~~~ 225 (1230)
T 1u6g_C 153 EALDIMADMLSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI----V-FVDLIEHLLSELSKN 225 (1230)
T ss_dssp HHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC---------CTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH----H-HHHHHHHHHHHhccC
Confidence 999999943321111111111 235677777788888999999999999998764331 2 234688888877654
Q ss_pred C-HHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHHHHh
Q 048113 275 T-WRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIAKL 336 (339)
Q Consensus 275 ~-~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v~~~ 336 (339)
+ +..+..|+.++..+...... .....-...++.++..+.-+.++++..|...+..++..+
T Consensus 226 ~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~ 286 (1230)
T 1u6g_C 226 DSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRC 286 (1230)
T ss_dssp CSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT
T ss_pred CchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHC
Confidence 3 35667788888877764321 111122455666555554445777888888887776643
No 68
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.53 E-value=9.3e-07 Score=75.71 Aligned_cols=186 Identities=11% Similarity=0.170 Sum_probs=135.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhc-CCChhHHHHHHHHHHHHhcCccchHHHHh
Q 048113 42 APLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQ-CQSTTLIELTVAAMLILSSCLENKLEIAS 120 (339)
Q Consensus 42 ~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 120 (339)
+.+.+.+++.+...|..|+..|..+..+.+.....- -...++.|...+. +++..++..|+.++..|+..-...-.-.-
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 347788889999999999999999988533211100 1245777888885 88999999999999999842211111112
Q ss_pred cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHH
Q 048113 121 SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALL 200 (339)
Q Consensus 121 ~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L 200 (339)
...++.++..+.+ .+..++..|..+|.++...... ...++.+...+++. +..++..++..|
T Consensus 97 ~~ilp~ll~~l~d-----------~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~--~~~vr~~~l~~l 157 (242)
T 2qk2_A 97 SACVPSLLEKFKE-----------KKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNK--NPSVKSETALFI 157 (242)
T ss_dssp HHHHHHHHHGGGC-----------CCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCS--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCC--ChHHHHHHHHHH
Confidence 4478899999988 7899999999999999764321 13567788888764 578999999999
Q ss_pred HHhhcCC-Hh-hhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhcc
Q 048113 201 ENIVSSS-ED-ALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKS 249 (339)
Q Consensus 201 ~n~l~~~-~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 249 (339)
...+... ++ .-..... ..++.|+.++.+.++.++..|..++..++..
T Consensus 158 ~~~l~~~~~~~~~~~~l~--~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 158 ARALTRTQPTALNKKLLK--LLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHHHTTCCGGGCCHHHHH--HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCccHHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 9445554 32 1122332 4789999999999999999999999998854
No 69
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.52 E-value=5.4e-06 Score=76.64 Aligned_cols=236 Identities=14% Similarity=0.099 Sum_probs=158.8
Q ss_pred HHHHHhcc-CCHHHHHHHHHHHHHhccCCcchhhHHhhcCC--hHHHHHhhcC---------------C--ChhHHHHHH
Q 048113 43 PLISMLCS-QDYEAIEAALLSLLSLACGSERNKIRIVKSGI--VPVLLEVLQC---------------Q--STTLIELTV 102 (339)
Q Consensus 43 ~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~--i~~Lv~lL~~---------------~--~~~~~~~a~ 102 (339)
.++..|.. ++.+.+..++++|..|.. .+..|..+.+.++ +|.++.++.. . ..+++-+++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 34555554 245667789999999999 7999999987643 6777654431 1 245678899
Q ss_pred HHHHHHhcCccchHHHHhcchH--HHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCC-CCh----H-HHHhcC
Q 048113 103 AAMLILSSCLENKLEIASSGAI--QRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCH-QLI----S-PIVSSG 174 (339)
Q Consensus 103 ~~L~nLs~~~~~~~~i~~~g~i--~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~-~~~----~-~i~~~g 174 (339)
.++|-|+..++..+.+.+.+.. +.|+.+++.. ...++..-++.+|.|+.... ... . .++..+
T Consensus 250 l~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s----------~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~ 319 (480)
T 1ho8_A 250 LLIWLLTFNPVFANELVQKYLSDFLDLLKLVKIT----------IKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGN 319 (480)
T ss_dssp HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHC----------CSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHC
T ss_pred HHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhh----------ccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHcc
Confidence 9999999988776767666644 7888888774 67899999999999997643 222 2 233344
Q ss_pred cHHHHHHHhhc-cccCchHHHHH---------------------HHHHHHhhcCCHhhhH---------HHHh-hCCcHH
Q 048113 175 VTYCLLQLIHS-SEKSSGLTEKA---------------------IALLENIVSSSEDALQ---------EIAA-TCGAIR 222 (339)
Q Consensus 175 ~i~~Lv~ll~~-~~~~~~~~~~a---------------------~~~L~n~l~~~~~~~~---------~i~~-~~g~i~ 222 (339)
+ +++++.|.. ...++++.+.- ..+....+...|..+. ++.+ ....+.
T Consensus 320 ~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk 398 (480)
T 1ho8_A 320 A-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFR 398 (480)
T ss_dssp H-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHH
T ss_pred c-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHH
Confidence 4 455555543 33344444321 1111112233333322 1211 123578
Q ss_pred HHHHHhhc----------CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113 223 ALVETIEE----------GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 223 ~Lv~lL~~----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 291 (339)
.|+++|++ .++.+..-||.=+..++...|. +|..+.+.|+=..+++++.+.++.++..|..+++-+-.
T Consensus 399 ~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~-gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 399 QLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE-SIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcc-hhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999974 2466777788888888888765 78888888999999999999999999999999976644
No 70
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.51 E-value=1.5e-05 Score=66.35 Aligned_cols=180 Identities=16% Similarity=0.181 Sum_probs=139.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhc
Q 048113 4 MLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKS 80 (339)
Q Consensus 4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~ 80 (339)
.|..+|...|+.++..|+.+|.++.+. .-+...=...++.++.++++.+..+...|+++|..|-.+.|-....+..
T Consensus 37 ~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~K- 115 (265)
T 3b2a_A 37 LILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLK- 115 (265)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHH-
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHH-
Confidence 467788899999999999999999886 2222333668899999999999999999999999999987776666654
Q ss_pred CChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhh
Q 048113 81 GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNL 160 (339)
Q Consensus 81 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nL 160 (339)
.+.+|..++.++++-++++++..+..+.-....+. .+..+.+++.+ .+..++..|+++|.++
T Consensus 116 -l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~------V~~~l~sLl~S-----------kd~~vK~agl~~L~ei 177 (265)
T 3b2a_A 116 -AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKL------VRTYINELVVS-----------PDLYTKVAGFCLFLNM 177 (265)
T ss_dssp -HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHH------HHHHHHHHHTC-----------SSHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHH------HHHHHHHHHhC-----------CChhHHHHHHHHHHHh
Confidence 35778999999999999999999999943333333 67888889966 8999999999999999
Q ss_pred cCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcC
Q 048113 161 STCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSS 206 (339)
Q Consensus 161 s~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~ 206 (339)
+...+....+ .+++.-+-.++++. ++.+++.|+.++.+.++.
T Consensus 178 a~~S~D~~i~--~~I~~eI~elL~~e--D~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 178 LNSSADSGHL--TLILDEIPSLLQND--NEFIVELALDVLEKALSF 219 (265)
T ss_dssp GGGCSSCCCG--GGTTTTHHHHHTCS--CHHHHHHHHHHHHHHTTS
T ss_pred hcccCCHHHH--HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHcC
Confidence 8743322211 12344566777764 689999999999954443
No 71
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.43 E-value=1.8e-05 Score=65.76 Aligned_cols=225 Identities=12% Similarity=0.059 Sum_probs=158.7
Q ss_pred cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccc-hH
Q 048113 38 RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN-KL 116 (339)
Q Consensus 38 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~-~~ 116 (339)
.+.+..|..+|.+.|+.++.+|+.+|..+-+.-+..-....-...++.++.++.++++.+...|+.+|..|..+.+- ..
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 45788899999999999999999999999985333333333346889999999999999999999999999865543 33
Q ss_pred HHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHH
Q 048113 117 EIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKA 196 (339)
Q Consensus 117 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a 196 (339)
.+ .-.+..|.+++.+ +++-.+..|+..|..+......+ +++..+..++.+ ++..++..+
T Consensus 112 ~y--~Kl~~aL~dlik~-----------~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~S--kd~~vK~ag 170 (265)
T 3b2a_A 112 TF--LKAAKTLVSLLES-----------PDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVS--PDLYTKVAG 170 (265)
T ss_dssp HH--HHHHHHHHHHTTS-----------CCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTC--SSHHHHHHH
T ss_pred HH--HHHHHHHHHHhcC-----------CCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhC--CChhHHHHH
Confidence 33 1257788888887 89999999999999993322222 346678888855 367889999
Q ss_pred HHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHH-Hhh-hcC
Q 048113 197 IALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLL-QLS-VDG 274 (339)
Q Consensus 197 ~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~-~ll-~~~ 274 (339)
+.+|. +++...+... +. .+.+..+-++|++.++.+++.|+.++..+...+-.+ +.+-+--.+...+ .+. ..+
T Consensus 171 l~~L~-eia~~S~D~~-i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~--~~~~~~~~~~~~v~~l~~~~~ 244 (265)
T 3b2a_A 171 FCLFL-NMLNSSADSG-HL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLE--NVKIELLKISRIVDGLVYREG 244 (265)
T ss_dssp HHHHH-HHGGGCSSCC-CG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCS--CCHHHHHHHHHHHHHGGGCSS
T ss_pred HHHHH-HhhcccCCHH-HH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccH--hHHHHHHHHHHHHHHHHHhcC
Confidence 99999 5554332221 12 246667778899999999999999999998763110 1111111122222 233 567
Q ss_pred CHHHHHHHHHHHHHH
Q 048113 275 TWRAKNMARDLLLLL 289 (339)
Q Consensus 275 ~~~~~~~A~~~L~~l 289 (339)
.|.++.+|-.+...+
T Consensus 245 ~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 245 APIIRLKAKKVSDLI 259 (265)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHH
Confidence 888888876655443
No 72
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.41 E-value=3.8e-08 Score=76.11 Aligned_cols=117 Identities=12% Similarity=0.105 Sum_probs=93.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI 82 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~ 82 (339)
+.|+..|.++++.+|..|++.|..+. ...++.|+.+|+++++.+|..|+++|.++.. .++
T Consensus 15 ~~l~~~L~~~~~~vR~~A~~~L~~~~---------~~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-----------~~a 74 (131)
T 1te4_A 15 VPRGSHMADENKWVRRDVSTALSRMG---------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERA 74 (131)
T ss_dssp ------CCSSCCCSSSSCCSSTTSCS---------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhC---------chHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-----------HHH
Confidence 45777888889999999988887653 1237999999999999999999999998864 125
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhh
Q 048113 83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNL 160 (339)
Q Consensus 83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nL 160 (339)
++.|+..+.++++.++..|+++|.++. +..+++.|+.++++ .++.++..|+.+|..+
T Consensus 75 ~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d-----------~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 75 VEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAET-----------GTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTS-----------CCTHHHHHHHHHGGGC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHhC
Confidence 899999999999999999999998875 23478999999987 7889999999988753
No 73
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.34 E-value=0.00023 Score=71.42 Aligned_cols=235 Identities=16% Similarity=0.084 Sum_probs=138.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCC--------HHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113 11 NGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQD--------YEAIEAALLSLLSLACGSERNKIRIVKSGI 82 (339)
Q Consensus 11 s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~--------~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~ 82 (339)
++++.++.-|+-+|..+..+++. .++..|...|.+++ +.++..|+..|+....++. +. .+
T Consensus 406 s~~~~ik~GAllaLGli~ag~~~-----~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~--~e-----ev 473 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFGR-----DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA--NI-----EV 473 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTTH-----HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC--CH-----HH
T ss_pred CCcHHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC--CH-----HH
Confidence 67788899999999888766322 14667777777655 6788888888888765422 11 24
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113 83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST 162 (339)
Q Consensus 83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~ 162 (339)
++.|..++.+++...++.|+.+|..+-....+.. +++.|+..+.+. .+.+++..++..|..+..
T Consensus 474 ~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~------ai~~LL~~~~e~----------~~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 474 YEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE------AIHDMFTYSQET----------QHGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH------HHHHHHHHHHHC----------SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH------HHHHHHHHHhcc----------CcHHHHHHHHHHHHhhhC
Confidence 5678888887777677777777766543333222 345555544432 455566666666655533
Q ss_pred -CCCChHHHHh-----------c----------------CcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHH
Q 048113 163 -CHQLISPIVS-----------S----------------GVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEI 214 (339)
Q Consensus 163 -~~~~~~~i~~-----------~----------------g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i 214 (339)
.++....+++ . .+|+.|++.+.++. ++.++..|+.+|+ .+....
T Consensus 538 g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLG-lI~~g~------ 609 (963)
T 4ady_A 538 GRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALG-FVLLRD------ 609 (963)
T ss_dssp TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHH-HHTSSS------
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHH-hhccCC------
Confidence 2221111100 0 13455555554432 3456666666666 433221
Q ss_pred HhhCCcHHHHHHHh-hcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhcc
Q 048113 215 AATCGAIRALVETI-EEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDC 292 (339)
Q Consensus 215 ~~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 292 (339)
...++.++++| ++.++.++..++.+|..++...+. .. ++..|..+.++.++.++..|+.+|..+-..
T Consensus 610 ---~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~---~~-----aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 610 ---YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL---QS-----AIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp ---CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC---HH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc---HH-----HHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 23456666644 345677777777777777655432 11 355677777777777777777777776543
No 74
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.29 E-value=4.8e-06 Score=71.72 Aligned_cols=186 Identities=10% Similarity=0.111 Sum_probs=132.1
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHH---Hh-cCChHHHHHHh-ccCCHHHHHHHHHHHHHhccCCc-chh
Q 048113 2 EEMLMDNLLNGERETQIQAANELGK-LSRRQKHKL---VE-RGIIAPLISML-CSQDYEAIEAALLSLLSLACGSE-RNK 74 (339)
Q Consensus 2 ~~~Lv~~L~s~~~~~~~~a~~~L~~-l~~~~~~~i---~~-~g~i~~Lv~lL-~~~~~~~~~~A~~~L~~Ls~~~~-~~~ 74 (339)
.+-+...+.|.+|..|..|+..|.. +..++.+.. .+ ...+..|...+ ++.+..++..|+.++..++.+-. ..-
T Consensus 18 ~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f 97 (249)
T 2qk1_A 18 PKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGF 97 (249)
T ss_dssp CTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred ChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccc
Confidence 3456778899999999999999999 875422211 11 23466777778 67899999999999999997421 111
Q ss_pred h-HHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhc-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHH
Q 048113 75 I-RIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKID 152 (339)
Q Consensus 75 ~-~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~ 152 (339)
. .. ..-.+|.++..+.+..+.++..+..++..+.. .++....-.=...++.|...+++ .++.++..
T Consensus 98 ~~~y-~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~-----------k~~~vk~~ 165 (249)
T 2qk1_A 98 SKDY-VSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKH-----------KTPQIRME 165 (249)
T ss_dssp CHHH-HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTC-----------SSHHHHHH
T ss_pred cHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcC-----------CChHHHHH
Confidence 1 11 12368899999988888999999898888875 22211100011368899999988 79999999
Q ss_pred HHHHHHhhcCCCCC-hHHH---HhcCcHHHHHHHhhccccCchHHHHHHHHHH
Q 048113 153 AIATLHNLSTCHQL-ISPI---VSSGVTYCLLQLIHSSEKSSGLTEKAIALLE 201 (339)
Q Consensus 153 a~~~L~nLs~~~~~-~~~i---~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~ 201 (339)
++.+|..+...... -..+ +....+|.|.+++.+. +..++..|..++.
T Consensus 166 al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~--~~~VR~aA~~~l~ 216 (249)
T 2qk1_A 166 CTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT--QPAIRTIGFESFA 216 (249)
T ss_dssp HHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHH
Confidence 99999998763322 1222 2246899999999774 5789999998888
No 75
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.20 E-value=2.9e-05 Score=71.78 Aligned_cols=232 Identities=14% Similarity=0.126 Sum_probs=150.2
Q ss_pred HHHHHcC-CCHHHHHHHHHHHHHHHHH--HHHHHHhcC--ChHHHHHHhcc---------------C--CHHHHHHHHHH
Q 048113 5 LMDNLLN-GERETQIQAANELGKLSRR--QKHKLVERG--IIAPLISMLCS---------------Q--DYEAIEAALLS 62 (339)
Q Consensus 5 Lv~~L~s-~~~~~~~~a~~~L~~l~~~--~~~~i~~~g--~i~~Lv~lL~~---------------~--~~~~~~~A~~~ 62 (339)
+...|.+ ++...+--++.+|..+... +|..|.+.+ .++.++.+++. + ..+++.+++.+
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~ 251 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLL 251 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHH
Confidence 4445544 3455566788888888775 888887643 36666544331 1 35678999999
Q ss_pred HHHhccCCcchhhHHhhcCCh--HHHHHhhcCCC-hhHHHHHHHHHHHHhcCcc-c-----hHHHHhcchHHHHHHHhcC
Q 048113 63 LLSLACGSERNKIRIVKSGIV--PVLLEVLQCQS-TTLIELTVAAMLILSSCLE-N-----KLEIASSGAIQRLVEILNG 133 (339)
Q Consensus 63 L~~Ls~~~~~~~~~i~~~g~i--~~Lv~lL~~~~-~~~~~~a~~~L~nLs~~~~-~-----~~~i~~~g~i~~Lv~ll~~ 133 (339)
++.|+. +++....+...+.. +.|+.++.... +.+.+.++.++.|+..... . ++.+...++ +++++.|+.
T Consensus 252 iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~ 329 (480)
T 1ho8_A 252 IWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE 329 (480)
T ss_dssp HHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred HHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence 999999 67777888777754 67777777654 5688889999999987542 1 223333445 456665544
Q ss_pred -CCCCCCCccCCCCHHHHH---------------------HHHHHHHh-hcCCCC---------ChHHHHhc--CcHHHH
Q 048113 134 -DLADDDNSYGRISVQAKI---------------------DAIATLHN-LSTCHQ---------LISPIVSS--GVTYCL 179 (339)
Q Consensus 134 -~~~~~~~~~~~~~~~~~~---------------------~a~~~L~n-Ls~~~~---------~~~~i~~~--g~i~~L 179 (339)
+. .++++.. ........ |.=+|. |...+-+. ..+..|
T Consensus 330 rk~---------~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L 400 (480)
T 1ho8_A 330 RKY---------SDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQL 400 (480)
T ss_dssp SCC---------SSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHH
T ss_pred CCC---------CcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHH
Confidence 33 2332222 12222221 111221 22233332 367889
Q ss_pred HHHhhcc--------ccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhc
Q 048113 180 LQLIHSS--------EKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICK 248 (339)
Q Consensus 180 v~ll~~~--------~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 248 (339)
+++|.+. +.++....-||.=++..+...|++|..+-+ -|+=..+.+++.+++++++.+|+.|+..+..
T Consensus 401 ~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~-lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 401 IELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDK-TGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHH-HSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHH-cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999742 224566666776677566678888877665 8999999999999999999999999877654
No 76
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.17 E-value=4.9e-05 Score=65.32 Aligned_cols=191 Identities=10% Similarity=0.116 Sum_probs=131.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHH-hccCCcchhhHHhh-cCChHHHHHhh-cCCChhHHHHHHHHHHHHhcCc---cch-
Q 048113 43 PLISMLCSQDYEAIEAALLSLLS-LACGSERNKIRIVK-SGIVPVLLEVL-QCQSTTLIELTVAAMLILSSCL---ENK- 115 (339)
Q Consensus 43 ~Lv~lL~~~~~~~~~~A~~~L~~-Ls~~~~~~~~~i~~-~g~i~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~---~~~- 115 (339)
.+-+.+.+.+...|..|+..|.. +..++++....-.+ ...+..|.+.+ ...+..++..|+.++..++..- ...
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 34567788999999999999999 87643432210111 13477788888 6778899999999999998421 111
Q ss_pred HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCChHHHHhcCcHHHHHHHhhccccCchHHH
Q 048113 116 LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQLISPIVSSGVTYCLLQLIHSSEKSSGLTE 194 (339)
Q Consensus 116 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 194 (339)
.. ....+|.++..+.+ ....++..+..+|..++.. ++....-.=...++.|+..|++. ...+++
T Consensus 100 ~y--~~~llp~ll~~l~d-----------kk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~~vk~ 164 (249)
T 2qk1_A 100 DY--VSLVFTPLLDRTKE-----------KKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TPQIRM 164 (249)
T ss_dssp HH--HHHHHHHHHHGGGC-----------CCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SHHHHH
T ss_pred HH--HHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--ChHHHH
Confidence 21 13368899999988 6888999988888888762 22111100012577888888774 478999
Q ss_pred HHHHHHHHhhcCCHh---hhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhcc
Q 048113 195 KAIALLENIVSSSED---ALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKS 249 (339)
Q Consensus 195 ~a~~~L~n~l~~~~~---~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 249 (339)
.++..|...+...+. .-...+. ...+|.|.+++.+.++.++..|..++..++..
T Consensus 165 ~al~~l~~~~~~~~~~~~~l~~~l~-~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 165 ECTQLFNASMKEEKDGYSTLQRYLK-DEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp HHHHHHHHHHHHCCSCSHHHHHHHT-TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcchhHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 999998844433332 1112231 46899999999999999999999999888743
No 77
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.17 E-value=3.2e-07 Score=70.83 Aligned_cols=120 Identities=16% Similarity=0.126 Sum_probs=89.6
Q ss_pred hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchH
Q 048113 37 ERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKL 116 (339)
Q Consensus 37 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~ 116 (339)
....++.++.+|+++++.+|..|+++|..+.. + .++.|+.+|.++++.++..|+++|.++..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS------
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC------
Confidence 45678889999999999999999888876543 1 26999999999999999999999987652
Q ss_pred HHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHH
Q 048113 117 EIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKA 196 (339)
Q Consensus 117 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a 196 (339)
...++.|+..+++ .++.++..|+++|.++.. ..+++.|..++++. +..++..|
T Consensus 72 ----~~a~~~L~~~L~d-----------~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~--~~~vr~~A 124 (131)
T 1te4_A 72 ----ERAVEPLIKLLED-----------DSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETG--TGFARKVA 124 (131)
T ss_dssp ----HHHHHHHHHHHHH-----------CCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSC--CTHHHHHH
T ss_pred ----HHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC--CHHHHHHH
Confidence 3468999999988 799999999999999852 24688999999763 57888888
Q ss_pred HHHHH
Q 048113 197 IALLE 201 (339)
Q Consensus 197 ~~~L~ 201 (339)
..+|.
T Consensus 125 ~~aL~ 129 (131)
T 1te4_A 125 VNYLE 129 (131)
T ss_dssp HHHGG
T ss_pred HHHHH
Confidence 88776
No 78
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.14 E-value=0.00019 Score=71.94 Aligned_cols=200 Identities=14% Similarity=0.113 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhc-
Q 048113 14 RETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQ- 91 (339)
Q Consensus 14 ~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~- 91 (339)
+.+|..|+-.|+....+ . +..++..|..++.+++...++.|+.+|+.+-.+.... .++..|+..+.
T Consensus 451 ~~ir~gAaLGLGla~~GS~-----~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-------~ai~~LL~~~~e 518 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSA-----NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-------EAIHDMFTYSQE 518 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCC-----CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-------HHHHHHHHHHhc
Confidence 45555666666554322 1 1124566777777777666667777777653322211 12344444332
Q ss_pred CCChhHHHHHHHHHHHHhcCccc-hHHHH---------------------------hcchHHHHHHHhcCCCCCCCCccC
Q 048113 92 CQSTTLIELTVAAMLILSSCLEN-KLEIA---------------------------SSGAIQRLVEILNGDLADDDNSYG 143 (339)
Q Consensus 92 ~~~~~~~~~a~~~L~nLs~~~~~-~~~i~---------------------------~~g~i~~Lv~ll~~~~~~~~~~~~ 143 (339)
..+..++..++..|..+....+. .+.+. +...|+.|+..+.++
T Consensus 519 ~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--------- 589 (963)
T 4ady_A 519 TQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--------- 589 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---------
T ss_pred cCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---------
Confidence 33455666666666655432211 11110 112577777777654
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHH
Q 048113 144 RISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRA 223 (339)
Q Consensus 144 ~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~ 223 (339)
.+..++..|+.+|..+...++ ..++.++.+|..+. ++.++..+..+|+ +++.... . ..++..
T Consensus 590 -~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~-d~~VR~gAalALG-li~aGn~------~-~~aid~ 651 (963)
T 4ady_A 590 -SNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSH-NAHVRCGTAFALG-IACAGKG------L-QSAIDV 651 (963)
T ss_dssp -SCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCS-CHHHHHHHHHHHH-HHTSSSC------C-HHHHHH
T ss_pred -CcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcC-CHHHHHHHHHHHH-HhccCCC------c-HHHHHH
Confidence 577889999999988765432 25777887766543 5788999999999 5554322 1 247888
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhhccCch
Q 048113 224 LVETIEEGSPQCKEHAVAILLLICKSCRD 252 (339)
Q Consensus 224 Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~ 252 (339)
|..++.+.+..++..|+.+|..+.....+
T Consensus 652 L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 652 LDPLTKDPVDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHSTTCCT
T ss_pred HHHHccCCCHHHHHHHHHHHHHHhcCCcc
Confidence 88888888999999999999998765433
No 79
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.13 E-value=2.8e-05 Score=70.02 Aligned_cols=244 Identities=7% Similarity=-0.018 Sum_probs=148.0
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHH
Q 048113 6 MDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPV 85 (339)
Q Consensus 6 v~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~ 85 (339)
++++.+.|.+.+.-.--++.+++..... + -=++..+.+-++++++-+|..|+++|+++... +--+ ...+.
T Consensus 74 ~kl~~s~d~~lKrLvYLyl~~~~~~~~e-~--iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~-----~l~~~ 143 (355)
T 3tjz_B 74 TKLFQSNDPTLRRMCYLTIKEMSCIAED-V--IIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQ-----AIERY 143 (355)
T ss_dssp HGGGGCCCHHHHHHHHHHHHHHTTTSSC-G--GGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHH-----HHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHhCCCHHH-H--HHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHH-----HHHHH
Confidence 4566677777777666666665543100 0 12455566777888999999999999999882 2222 24566
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCC
Q 048113 86 LLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQ 165 (339)
Q Consensus 86 Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~ 165 (339)
+-+.|.+.++.++..|+.+...|....+ +.+ .++++.+-+++.+ .++-+..+|+.+|..+...+.
T Consensus 144 lk~~L~d~~pyVRk~A~l~~~kL~~~~p--e~v--~~~~~~l~~ll~d-----------~n~~V~~~Al~lL~ei~~~d~ 208 (355)
T 3tjz_B 144 MKQAIVDKVPSVSSSALVSSLHLLKCSF--DVV--KRWVNEAQEAASS-----------DNIMVQYHALGLLYHVRKNDR 208 (355)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTTTCH--HHH--HTTHHHHHHHTTC-----------SSHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHhccCH--HHH--HHHHHHHHHHhcC-----------CCccHHHHHHHHHHHHHhhch
Confidence 7788889999999999999998875443 323 3689999999988 799999999999999976431
Q ss_pred ChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhh-HHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHH
Q 048113 166 LISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDAL-QEIAATCGAIRALVETIEEGSPQCKEHAVAILL 244 (339)
Q Consensus 166 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~ 244 (339)
. .+..|+..+..+.-..+ ..-+..+. .+......- ... ....++.+...|++.++.+.-.|+.++.
T Consensus 209 --~------a~~kLv~~l~~~~l~~~--~~q~~llr-~l~~~~~~d~~~~--~~~~~~~l~~~L~~~~~aVvyEa~k~I~ 275 (355)
T 3tjz_B 209 --L------AVSKMISKFTRHGLKSP--FAYCMMIR-VASRQLEDEDGSR--DSPLFDFIESCLRNKHEMVVYEAASAIV 275 (355)
T ss_dssp --H------HHHHHHHHHHSSCCSCH--HHHHHHHH-HHTCC-------------------CCCCCSSHHHHHHHHHHHT
T ss_pred --H------HHHHHHHHHhcCCCcCh--HHHHHHHH-HHHHhccccchhh--HHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 1 45556666654211012 12222333 332221111 111 1356677777788889999999999998
Q ss_pred HhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccC
Q 048113 245 LICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCS 293 (339)
Q Consensus 245 ~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 293 (339)
.+...+ . . . -..++..|..++.++++.+|..|+..|..+....
T Consensus 276 ~l~~~~-~---~-~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~ 318 (355)
T 3tjz_B 276 NLPGCS-A---K-E-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKH 318 (355)
T ss_dssp C-----------------CCCTHHHHHHSSSSSSHHHHHHCC-------
T ss_pred hccCCC-H---H-H-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHC
Confidence 886532 1 1 1 1345777888899999999999999888777644
No 80
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.12 E-value=0.00014 Score=64.04 Aligned_cols=182 Identities=12% Similarity=0.127 Sum_probs=133.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHH-HHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh-
Q 048113 4 MLMDNLLNGERETQIQAANELGK-LSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK- 79 (339)
Q Consensus 4 ~Lv~~L~s~~~~~~~~a~~~L~~-l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~- 79 (339)
.+++.|.+++...+..++..|+. +..+ ....|++.+++..|+......+.+.+..++++|.+|=. ...+...+++
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v~Gm~gvvs~ 200 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SHHHHHHHHHC
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-ccccccchhCC
Confidence 46778888999999999999999 5554 88889999999999999999999999999999999998 5777766664
Q ss_pred cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc-cchHHHHhc--------c--hHHHHHHHhcCCCCCCCCccCCCCHH
Q 048113 80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL-ENKLEIASS--------G--AIQRLVEILNGDLADDDNSYGRISVQ 148 (339)
Q Consensus 80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~--------g--~i~~Lv~ll~~~~~~~~~~~~~~~~~ 148 (339)
...|..+..++.+.+..+...|+.+|..+.... .+...+.+. | -.+.|+.+|+..+ +.+.+
T Consensus 201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~--------~~D~e 272 (339)
T 3dad_A 201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKN--------GADPE 272 (339)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTT--------SCCHH
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccC--------CCCHH
Confidence 467899999999888889999999999998644 344433321 1 2779999998321 17899
Q ss_pred HHHHHHHHHHhhcC-CC--CChHHHH----hcCcHHHHHHHhhccccCchHHH
Q 048113 149 AKIDAIATLHNLST-CH--QLISPIV----SSGVTYCLLQLIHSSEKSSGLTE 194 (339)
Q Consensus 149 ~~~~a~~~L~nLs~-~~--~~~~~i~----~~g~i~~Lv~ll~~~~~~~~~~~ 194 (339)
++.+|+..+-.+-. .+ +.+..+. +.|.-..+.+.|.+...+.++++
T Consensus 273 lq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 273 LLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 99999888776633 23 2233333 23544455555655322334443
No 81
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.10 E-value=0.0002 Score=72.52 Aligned_cols=296 Identities=11% Similarity=0.090 Sum_probs=187.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcc--hhhHHhhcC
Q 048113 5 LMDNLLNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSER--NKIRIVKSG 81 (339)
Q Consensus 5 Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~--~~~~i~~~g 81 (339)
++..+..++...+..|+..+..+..+ ........+.+..|.+.+.+.... +.|+.++..++...+. .-+.+ -.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~-~~~ 95 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPY-IVQ 95 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHH-HHT
T ss_pred HHhhccccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccc-hHH
Confidence 44555554556667777777776653 111112236677777777665333 8999999999964322 11221 125
Q ss_pred ChHHHHHhhcCCChhHHHHHHHHHHHHhc-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhh
Q 048113 82 IVPVLLEVLQCQSTTLIELTVAAMLILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNL 160 (339)
Q Consensus 82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nL 160 (339)
.+|.++....+....++..|..++..+.. .++... ...+|.|+..+++. .....+..|+.++..|
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~----------~kw~~k~~~l~~~~~~ 161 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVET----------NKWQEKIAILAAFSAM 161 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccc----------cchHHHHHHHHHHHHH
Confidence 78888888888888899888877777663 333222 34799999999773 5799999999999999
Q ss_pred cCCCCChHHHHhc--CcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHH
Q 048113 161 STCHQLISPIVSS--GVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEH 238 (339)
Q Consensus 161 s~~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 238 (339)
+... ...+... ..||.+...+-+. ..++...|..++. .+|..-.|+. -..++|.|++-+.+++. ...
T Consensus 162 ~~~~--~~~~~~~~~~~~p~~~~~~~d~--k~~v~~~~~~~~~-~~~~~~~n~d----~~~~~~~~~~~~~~p~~--~~~ 230 (986)
T 2iw3_A 162 VDAA--KDQVALRMPELIPVLSETMWDT--KKEVKAAATAAMT-KATETVDNKD----IERFIPSLIQCIADPTE--VPE 230 (986)
T ss_dssp HHHS--HHHHHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHH-HHGGGCCCTT----TGGGHHHHHHHHHCTTH--HHH
T ss_pred HHHh--HHHHHHhccchhcchHhhcccC--cHHHHHHHHHHHH-HHHhcCCCcc----hhhhHHHHHHHhcChhh--hHH
Confidence 8643 3444333 6788888888775 4788888888888 5554444432 14689999999988743 233
Q ss_pred HHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH--h
Q 048113 239 AVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID--A 316 (339)
Q Consensus 239 a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~--~ 316 (339)
++..|..-++-..-+. ..+ +=.+|.|.+=+...+...+++++.+..|+++.-+. ......-++.++..+. .
T Consensus 231 ~~~~l~~~tfv~~v~~-~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~----~~~~~~f~~~l~p~~~~~~ 303 (986)
T 2iw3_A 231 TVHLLGATTFVAEVTP-ATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED----PQVIAPFLGKLLPGLKSNF 303 (986)
T ss_dssp HHHHHTTCCCCSCCCH-HHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC----HHHHHHHHTTTHHHHHHHT
T ss_pred HHHHhhcCeeEeeecc-hhH--HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCC----HHHHhhhhhhhhhHHHHHh
Confidence 4444433332211100 111 01356666667778999999999999999997642 1223334444444443 2
Q ss_pred c---CcccchHHHHHHHHHHHH
Q 048113 317 E---GDTVAGTTLRLVEEMIAK 335 (339)
Q Consensus 317 ~---~~~~~~~a~~~l~~~v~~ 335 (339)
+ ..++|+.|.+.+..+...
T Consensus 304 ~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 304 ATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHHh
Confidence 3 366677777777776554
No 82
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.08 E-value=0.0002 Score=63.07 Aligned_cols=184 Identities=13% Similarity=0.139 Sum_probs=132.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH-hccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHH-
Q 048113 42 APLISMLCSQDYEAIEAALLSLLS-LACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA- 119 (339)
Q Consensus 42 ~~Lv~lL~~~~~~~~~~A~~~L~~-Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~- 119 (339)
..+++-|.+++...+..++..|.. ++. +.+.-..|+..||+..|+++....+...+.+++.++.+|..+...-.-|+
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~-D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQE-DKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHT-CTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhc-chHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence 445666777788889999999998 776 78999999999999999999999999999999999999998777654444
Q ss_pred hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCChHHHHhc-C---------cHHHHHHHhhcc-c
Q 048113 120 SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQLISPIVSS-G---------VTYCLLQLIHSS-E 187 (339)
Q Consensus 120 ~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~-g---------~i~~Lv~ll~~~-~ 187 (339)
...+|..+..++.+ ....+...|+..|..++.. +.+...+.++ . -++.|+.+|++. .
T Consensus 200 ~~~fI~~lyslv~s-----------~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~ 268 (339)
T 3dad_A 200 HSDTIQWLYTLCAS-----------LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNG 268 (339)
T ss_dssp CHHHHHHHHHGGGC-----------SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTS
T ss_pred CHHHHHHHHHHHcC-----------ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCC
Confidence 66799999999987 7899999999999999874 4454433332 1 377999999731 1
Q ss_pred cCchHHHHHHHHHHHhhcCCH--hhhHHHH---hhCCcHHHHHHHhhcC--ChHHHH
Q 048113 188 KSSGLTEKAIALLENIVSSSE--DALQEIA---ATCGAIRALVETIEEG--SPQCKE 237 (339)
Q Consensus 188 ~~~~~~~~a~~~L~n~l~~~~--~~~~~i~---~~~g~i~~Lv~lL~~~--~~~~~~ 237 (339)
.+.+++.+|+..+-..+...+ +.+..+. +..|.=..+.++++.. ++..++
T Consensus 269 ~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 269 ADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 357888887765543333322 3233333 2234444555566653 344443
No 83
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.03 E-value=0.001 Score=53.22 Aligned_cols=215 Identities=13% Similarity=0.155 Sum_probs=150.2
Q ss_pred HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcC-CChhHHHHHHHHHHHHhcCccc
Q 048113 36 VERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQC-QSTTLIELTVAAMLILSSCLEN 114 (339)
Q Consensus 36 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~ 114 (339)
.+...+..++.+|+++-..+|.+|+..+..++...++-.+.+. ..|+-++.. ....+....+.+++.++...+.
T Consensus 29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 4566788899999999999999999999999997666555543 446666554 4555555566888888753321
Q ss_pred hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHH
Q 048113 115 KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLT 193 (339)
Q Consensus 115 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 193 (339)
.| .+.+|.+..=.+- ++++.+.+...+|..+.. +|+... +++.-+..++.++ +..-+
T Consensus 104 --~v--~~vVp~lfanyri-----------gd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltsk--d~~Dk 161 (253)
T 2db0_A 104 --LV--KSMIPVLFANYRI-----------GDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSK--NREDK 161 (253)
T ss_dssp --HH--HHHHHHHHHHSCC-----------CSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCS--SHHHH
T ss_pred --HH--HhhHHHHHHHHhc-----------CCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCC--ChHHH
Confidence 11 2245655555555 799999999999999877 555333 3456678888864 33323
Q ss_pred HHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc
Q 048113 194 EKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD 273 (339)
Q Consensus 194 ~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~ 273 (339)
..|+. .+..-.+|..+.+. -++|.|..+|.+++.-++..|+.+|.+++..++ +.|+.+. .-++-+.+
T Consensus 162 l~aLn----Fi~alGen~~~yv~--PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np-klRkii~------~kl~e~~D 228 (253)
T 2db0_A 162 LTALN----FIEAMGENSFKYVN--PFLPRIINLLHDGDEIVRASAVEALVHLATLND-KLRKVVI------KRLEELND 228 (253)
T ss_dssp HHHHH----HHHTCCTTTHHHHG--GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH-HHHHHHH------HHHHHCCC
T ss_pred HHHHH----HHHHHhccCccccC--cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH-HHHHHHH------HHHHHhcC
Confidence 34444 44455566666663 689999999999999999999999999998864 4777543 34445667
Q ss_pred CCHHHHHHHHHHHHHHh
Q 048113 274 GTWRAKNMARDLLLLLR 290 (339)
Q Consensus 274 ~~~~~~~~A~~~L~~l~ 290 (339)
.+..++......|..+.
T Consensus 229 ~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 229 TSSLVNKTVKEGISRLL 245 (253)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 77777777666665554
No 84
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.93 E-value=9.5e-05 Score=66.57 Aligned_cols=236 Identities=13% Similarity=0.014 Sum_probs=129.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCCh
Q 048113 5 LMDNLLNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIV 83 (339)
Q Consensus 5 Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i 83 (339)
|..=+.++++-+|-.|+++|+++... .- ..+.+.+.+.+.+.++.++..|+-+..+|...+|+.- + +.+
T Consensus 109 l~kDl~~~N~~iR~lALRtL~~I~~~~m~-----~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~-~~~ 178 (355)
T 3tjz_B 109 LTKDMTGKEDSYRGPAVRALCQITDSTML-----QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----K-RWV 178 (355)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCTTTH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----H-TTH
T ss_pred HHhhcCCCcHhHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----H-HHH
Confidence 34556789999999999999998743 11 1234445667788999999999999999988655432 2 578
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC
Q 048113 84 PVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC 163 (339)
Q Consensus 84 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~ 163 (339)
+.+-.++.+.++.++.+|+.+|+.+...+. . .+.+|+..+.... -.++-.+..-++.+..++..
T Consensus 179 ~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--~------a~~kLv~~l~~~~--------l~~~~~q~~llr~l~~~~~~ 242 (355)
T 3tjz_B 179 NEAQEAASSDNIMVQYHALGLLYHVRKNDR--L------AVSKMISKFTRHG--------LKSPFAYCMMIRVASRQLED 242 (355)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--H------HHHHHHHHHHSSC--------CSCHHHHHHHHHHHTCC---
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHhhch--H------HHHHHHHHHhcCC--------CcChHHHHHHHHHHHHhccc
Confidence 889999999999999999999999986541 1 5666676665510 02565666666666665553
Q ss_pred C--CChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHH
Q 048113 164 H--QLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVA 241 (339)
Q Consensus 164 ~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~ 241 (339)
+ +.. ...++.+...|++. ++.+.-.|+.++. .+...+. ... ..++..|..++.++++.++..|+.
T Consensus 243 d~~~~~-----~~~~~~l~~~L~~~--~~aVvyEa~k~I~-~l~~~~~---~~~--~~a~~~L~~fLss~d~niryvaLr 309 (355)
T 3tjz_B 243 EDGSRD-----SPLFDFIESCLRNK--HEMVVYEAASAIV-NLPGCSA---KEL--APAVSVLQLFCSSPKAALRYAAVR 309 (355)
T ss_dssp -------------------CCCCCS--SHHHHHHHHHHHT-C----------------CCCTHHHHHHSSSSSSHHHHHH
T ss_pred cchhhH-----HHHHHHHHHHHcCC--ChHHHHHHHHHHH-hccCCCH---HHH--HHHHHHHHHHHcCCCchHHHHHHH
Confidence 2 212 23455666667653 5678888888888 5544221 222 345677888888888999999999
Q ss_pred HHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHH
Q 048113 242 ILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDL 285 (339)
Q Consensus 242 ~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~ 285 (339)
.|..+....|.. +. ..-..+.+++.+++..+...|...
T Consensus 310 ~L~~l~~~~P~~----v~--~~n~~ie~li~d~n~sI~t~Aitt 347 (355)
T 3tjz_B 310 TLNKVAMKHPSA----VT--ACNLDLENLVTDANRSIATLAITT 347 (355)
T ss_dssp CC------------------------------------------
T ss_pred HHHHHHHHCcHH----HH--HHHHHHHHHccCCcHhHHHHHHHH
Confidence 998888765432 11 134556677788777776665543
No 85
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.76 E-value=0.0045 Score=49.61 Aligned_cols=181 Identities=12% Similarity=0.202 Sum_probs=132.0
Q ss_pred CChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhh
Q 048113 81 GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNL 160 (339)
Q Consensus 81 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nL 160 (339)
..+..++.+|+.+--.++.+|+..+.+++...+.-. ...+.+|+-+++.+ +..+......+++..+
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~----epl~~kL~vm~~ks----------EaIpltqeIa~a~G~l 97 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLY----EPMLKKLFSLLKKS----------EAIPLTQEIAKAFGQM 97 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGH----HHHHHHHHHHHHHC----------CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHH----HHHHHHHHHHHhhc----------ccCchHHHHHHHHhHH
Confidence 467888999988888899999999999997544311 22577788887663 7888888888888888
Q ss_pred cC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHH
Q 048113 161 ST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHA 239 (339)
Q Consensus 161 s~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a 239 (339)
+. .|+... +.+|.+..-..-+ +++++.+-..+|......+|+.- .+++..+..++.+++..-+..|
T Consensus 98 a~i~Pe~v~-----~vVp~lfanyrig--d~kikIn~~yaLeeIaranP~l~------~~v~rdi~smltskd~~Dkl~a 164 (253)
T 2db0_A 98 AKEKPELVK-----SMIPVLFANYRIG--DEKTKINVSYALEEIAKANPMLM------ASIVRDFMSMLSSKNREDKLTA 164 (253)
T ss_dssp HHHCHHHHH-----HHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHCHHHH------HHHHHHHHHHTSCSSHHHHHHH
T ss_pred HHhCHHHHH-----hhHHHHHHHHhcC--CccceecHHHHHHHHHHhChHHH------HHHHHHHHHHhcCCChHHHHHH
Confidence 76 555222 2344444444443 57888888888885555555433 3566778889998887778878
Q ss_pred HHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCC
Q 048113 240 VAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSS 294 (339)
Q Consensus 240 ~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 294 (339)
+..+..+..+.. +. -.-.+|.|..++.+.+.-++..|+..|-+++..++
T Consensus 165 LnFi~alGen~~---~y---v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np 213 (253)
T 2db0_A 165 LNFIEAMGENSF---KY---VNPFLPRIINLLHDGDEIVRASAVEALVHLATLND 213 (253)
T ss_dssp HHHHHTCCTTTH---HH---HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHhccCc---cc---cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH
Confidence 777777765532 21 23479999999999999999999999999998654
No 86
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.72 E-value=0.0027 Score=64.42 Aligned_cols=245 Identities=14% Similarity=0.138 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHH------HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhc
Q 048113 18 IQAANELGKLSRR------QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQ 91 (339)
Q Consensus 18 ~~a~~~L~~l~~~------~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~ 91 (339)
+.|+..+..++.. .--.+ .+.++.++..+.+....++..|-.++..+...-+.+ .+ ..++|.|+..|.
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~--~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~--a~--~~~~~~~~~~~~ 143 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYI--VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV--AI--KALLPHLTNAIV 143 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG--GH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccch--HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH--HH--HHHHHHHHHHhc
Confidence 7777777777743 11111 257888888888888899998888877777632222 22 456899999887
Q ss_pred CCC-hhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHH
Q 048113 92 CQS-TTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPI 170 (339)
Q Consensus 92 ~~~-~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i 170 (339)
+.. -..+..|+.++..|+...+......=...||.+...+.. ..+++...|..++..+|..-.|++.-
T Consensus 144 ~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d-----------~k~~v~~~~~~~~~~~~~~~~n~d~~ 212 (986)
T 2iw3_A 144 ETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWD-----------TKKEVKAAATAAMTKATETVDNKDIE 212 (986)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTC-----------SSHHHHHHHHHHHHHHGGGCCCTTTG
T ss_pred cccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhccc-----------CcHHHHHHHHHHHHHHHhcCCCcchh
Confidence 663 678899999999998644322222235678888888877 68999999999999988755554332
Q ss_pred HhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccC
Q 048113 171 VSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSC 250 (339)
Q Consensus 171 ~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 250 (339)
..+|.|++.+.+++ + ...|+..|+ ..+--.+.-..... =.+|-|.+-|...+..++..++.++-|+|.--
T Consensus 213 ---~~~~~~~~~~~~p~---~-~~~~~~~l~-~~tfv~~v~~~~l~--~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv 282 (986)
T 2iw3_A 213 ---RFIPSLIQCIADPT---E-VPETVHLLG-ATTFVAEVTPATLS--IMVPLLSRGLNERETGIKRKSAVIIDNMCKLV 282 (986)
T ss_dssp ---GGHHHHHHHHHCTT---H-HHHHHHHHT-TCCCCSCCCHHHHH--HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTC
T ss_pred ---hhHHHHHHHhcChh---h-hHHHHHHhh-cCeeEeeecchhHH--HHHHHHHhhhccCcchhheeeEEEEcchhhhc
Confidence 46899999998742 2 555666666 33322222222221 24677778888888889999999999999732
Q ss_pred --chhHHHHHHhcCChHHHHHhhh-cCCHHHHHHHHHHHHHHhc
Q 048113 251 --RDKYRSSILKEGVMPGLLQLSV-DGTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 251 --~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~A~~~L~~l~~ 291 (339)
+...+. + --..+|.|.+... -.+|++|+.|..++..|.+
T Consensus 283 ~~~~~~~~-f-~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 283 EDPQVIAP-F-LGKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp CCHHHHHH-H-HTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHhh-h-hhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 222111 1 1346666666544 3689999888888877744
No 87
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.43 E-value=0.0026 Score=65.18 Aligned_cols=254 Identities=13% Similarity=0.114 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhc------cCCHHHHHHHHHHHHHhccCCcchhhHHhhc-----CCh
Q 048113 15 ETQIQAANELGKLSRRQKHKLVERGIIAPLISMLC------SQDYEAIEAALLSLLSLACGSERNKIRIVKS-----GIV 83 (339)
Q Consensus 15 ~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~------~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~-----g~i 83 (339)
..|..|...|..++......+.. -+++.+-..+. +.+...++.|+.+++.++.+ ...+..-... ...
T Consensus 376 s~R~aa~~~L~~l~~~~~~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~-~~~~~~~~~~~~~~~~l~ 453 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNEVLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAIN-GNITNAGVSSTNNLLNVV 453 (960)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBS-SCCBTTBCCCBCTTCCHH
T ss_pred CcHHHHHHHHHHHHHHcchhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHH-hccccCCcccccccccHH
Confidence 46777888888888762232211 12233333444 45667899999999999863 1111100000 222
Q ss_pred HH----HHHhhcCC---ChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHH
Q 048113 84 PV----LLEVLQCQ---STTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIAT 156 (339)
Q Consensus 84 ~~----Lv~lL~~~---~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~ 156 (339)
+. ++..|.++ .+-+|..|++++..++..-. +. .-...++.+++.+.+ .+..++..|+.+
T Consensus 454 ~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-~~--~l~~~l~~l~~~L~d-----------~~~~V~~~A~~A 519 (960)
T 1wa5_C 454 DFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-KA--QLIELMPILATFLQT-----------DEYVVYTYAAIT 519 (960)
T ss_dssp HHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-HH--HHHHHHHHHHHHTTC-----------SCHHHHHHHHHH
T ss_pred HHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC-HH--HHHHHHHHHHHHhCC-----------CChhHHHHHHHH
Confidence 32 33445555 78899999999999986421 22 123467788888877 789999999999
Q ss_pred HHhhcCCC--------C-ChHHHHhc--CcHHHHHHHhhccc------cCchHHHHHHHHHHHhhcCCHhhhHHHHhhCC
Q 048113 157 LHNLSTCH--------Q-LISPIVSS--GVTYCLLQLIHSSE------KSSGLTEKAIALLENIVSSSEDALQEIAATCG 219 (339)
Q Consensus 157 L~nLs~~~--------~-~~~~i~~~--g~i~~Lv~ll~~~~------~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g 219 (339)
|.+++... + .+..+... ..++.|+.++.... ...+....|+..+...+. +....... .
T Consensus 520 l~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~---~~~~p~~~--~ 594 (960)
T 1wa5_C 520 IEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSE---DSIQPLFP--Q 594 (960)
T ss_dssp HHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHT---TTTGGGHH--H
T ss_pred HHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHH---HhhhhHHH--H
Confidence 99998632 1 23333221 45666677776530 012223333333331221 11111121 2
Q ss_pred cHHHHHHHhhc-----CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHh
Q 048113 220 AIRALVETIEE-----GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLR 290 (339)
Q Consensus 220 ~i~~Lv~lL~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~ 290 (339)
.++.|+..+.. .++.....+..++..++....++... -.....+|.+..++..........+..++..+.
T Consensus 595 l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 595 LLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 34455554432 24556666778887777653222222 233457788888887765555566666665554
No 88
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.42 E-value=0.00085 Score=62.90 Aligned_cols=239 Identities=15% Similarity=0.112 Sum_probs=153.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH-H----HHHHHhcCChHHHHHHhc--c------C--CHHHHHHHHHHHHHhc
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRR-Q----KHKLVERGIIAPLISMLC--S------Q--DYEAIEAALLSLLSLA 67 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~----~~~i~~~g~i~~Lv~lL~--~------~--~~~~~~~A~~~L~~Ls 67 (339)
|.|+.-|-+..|++|.-|+-+|+.+.+. . |..-...+..-+|+-.+. . + -..+|+.++++|+.+
T Consensus 177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL- 255 (800)
T 3oc3_A 177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI- 255 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-
Confidence 5577777899999999999999999876 1 110011233444433322 1 1 237999999999999
Q ss_pred cCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHH-hcchHHHHHHHhcCCCCCCCCccCCCC
Q 048113 68 CGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA-SSGAIQRLVEILNGDLADDDNSYGRIS 146 (339)
Q Consensus 68 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~~~~~~ 146 (339)
.+-+.. ..++..|+..+..+.-+++..++-.|..+ +..+. =.+.++.++.-|++ .+
T Consensus 256 ~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D-----------~D 312 (800)
T 3oc3_A 256 YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSS-----------PD 312 (800)
T ss_dssp TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTC-----------SS
T ss_pred HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCC-----------cc
Confidence 754432 34555555555777889999999999888 11111 24567788888888 79
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHH
Q 048113 147 VQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVE 226 (339)
Q Consensus 147 ~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~ 226 (339)
.+++..|+.+|.-++ .++.... ++..+-+.|.+-++-..-....+..|+ .++..+.. . ......+|.|.-
T Consensus 313 DDVRAVAAetLiPIA-~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLA-kL~s~p~~--a-~~dp~LVPRL~P 382 (800)
T 3oc3_A 313 EDIKLLSAELLCHFP-ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLT-KIYRENPE--L-SIPPERLKDIFP 382 (800)
T ss_dssp HHHHHHHHHHHTTSC-CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHH-HHHHHCTT--C-CCCSGGGGGTGG
T ss_pred cHHHHHHHHHhhhhc-chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHH-HHHcCCcc--c-ccChHHHHHHHh
Confidence 999999999999998 3322222 233344444443222233444455555 33333321 1 112467899999
Q ss_pred HhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHH-HHhhhcCCHHHHHHHHHHHH
Q 048113 227 TIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGL-LQLSVDGTWRAKNMARDLLL 287 (339)
Q Consensus 227 lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L-~~ll~~~~~~~~~~A~~~L~ 287 (339)
++.+.-+.++..++.+|..+. ... ++..+ ..++-..+++++..+..+-.
T Consensus 383 FLRHtITSVR~AVL~TL~tfL--~~~----------~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 383 CFTSPVPEVRTSILNMVKNLS--EES----------IDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GGTCSSHHHHHHHHHHTTTCC--CHH----------HHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred hhcCCcHHHHHHHHHHHHHHH--hhh----------HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999999999987776 111 23333 34577788888877777664
No 89
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.011 Score=51.29 Aligned_cols=178 Identities=15% Similarity=0.120 Sum_probs=118.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHH-HH----HHHH-hc-CChHHHHHHhccCCHHHHHHHHHHHHHhccCCcc--h-h
Q 048113 5 LMDNLLNGERETQIQAANELGKLSRR-QK----HKLV-ER-GIIAPLISMLCSQDYEAIEAALLSLLSLACGSER--N-K 74 (339)
Q Consensus 5 Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~----~~i~-~~-g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~--~-~ 74 (339)
|-+.|.|.+|..|..|+..|..+... .+ .... .. ...+.+-..+.+.+..++..|+.++..++..... . +
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 56789999999999999999887765 11 1111 12 3445566788888999999999999988763211 1 1
Q ss_pred --hHHhhcCChHHHHH-hhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHH
Q 048113 75 --IRIVKSGIVPVLLE-VLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKI 151 (339)
Q Consensus 75 --~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~ 151 (339)
....-...+|.|+. .+.++.+.++..+..++..+......... .++.+...+.+ .++.++.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~-----------Knpkv~~ 157 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEK-----------KLPKLIA 157 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGC-----------SCHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhc-----------cCHHHHH
Confidence 11222346777775 47777888999998888877643332222 35667777777 7999999
Q ss_pred HHHHHHHhhcCC--CCCh--HHHHhcCcHHHHHHHhhccccCchHHHHHHHHHH
Q 048113 152 DAIATLHNLSTC--HQLI--SPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLE 201 (339)
Q Consensus 152 ~a~~~L~nLs~~--~~~~--~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~ 201 (339)
.++..|..+... .... ...+. .+++.+..++.+. +..++..|..++.
T Consensus 158 ~~l~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~--~~~VR~aA~~l~~ 208 (278)
T 4ffb_C 158 AAANCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHG--DRNVRSQTMNLIV 208 (278)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCS--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCC--cHHHHHHHHHHHH
Confidence 999999887431 2211 11111 2445566777764 5899999998888
No 90
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=96.86 E-value=0.018 Score=50.55 Aligned_cols=178 Identities=12% Similarity=0.102 Sum_probs=106.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHH----HHhcc-CCHHHHHHHHHHHHHhccCCcchhhHH
Q 048113 5 LMDNLLNGERETQIQAANELGKLSRR--QKHKLVERGIIAPLI----SMLCS-QDYEAIEAALLSLLSLACGSERNKIRI 77 (339)
Q Consensus 5 Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv----~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~~i 77 (339)
+.+++ +...+.+.-++..+|-+..+ ....+.+.+.-..++ ..+.+ ..+..+..++++++|+.. ++..+..+
T Consensus 108 l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l 185 (304)
T 3ebb_A 108 LWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLM 185 (304)
T ss_dssp HHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHH
T ss_pred HHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHH
Confidence 33343 44556667777777766554 333443332223333 33332 356779999999999999 68888877
Q ss_pred hhc--CChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc-chHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHH
Q 048113 78 VKS--GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE-NKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAI 154 (339)
Q Consensus 78 ~~~--g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~ 154 (339)
... .+++.+...+.+++..++..++..++|++.... .+..=.....+..+..++... .+.+....++
T Consensus 186 ~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~----------~d~EalyR~L 255 (304)
T 3ebb_A 186 MSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVV----------QDLEATFRLL 255 (304)
T ss_dssp HHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTC----------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcc----------CCHHHHHHHH
Confidence 653 345555555566688899999999999985211 010000112445555666553 6889999999
Q ss_pred HHHHhhcCCCCChHHHHhc-CcHHHHHHHhhccccCchHHHH
Q 048113 155 ATLHNLSTCHQLISPIVSS-GVTYCLLQLIHSSEKSSGLTEK 195 (339)
Q Consensus 155 ~~L~nLs~~~~~~~~i~~~-g~i~~Lv~ll~~~~~~~~~~~~ 195 (339)
-+|.+|...+.....+.+. |+-..+-+.... ....++.+.
T Consensus 256 vALGtL~~~~~~~~~lak~l~~~~~v~~~~~~-~~~~kv~~~ 296 (304)
T 3ebb_A 256 VALGTLISDDSNAVQLAKSLGVDSQIKKYSSV-SEPAKVSEC 296 (304)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGC-CSSHHHHHH
T ss_pred HHHHHHHhCChhHHHHHHHcCHHHHHHHHHhC-CCchhHHHH
Confidence 9999998765555555555 444333333333 233444433
No 91
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.77 E-value=0.21 Score=50.86 Aligned_cols=219 Identities=10% Similarity=0.122 Sum_probs=127.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHh---ccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHH
Q 048113 10 LNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISML---CSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPV 85 (339)
Q Consensus 10 ~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL---~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~ 85 (339)
.+.+|..+..++.+++.++.. .. .....++.++..+ .++++.++..++++++.++..-..+.. . -..+++.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~---~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~-l~~vl~~ 533 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDV---NYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-M-INSVLPL 533 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCS---SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-H-HTTTHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCc---hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-H-HHHHHHH
Confidence 567899999999999998865 11 0123344444433 335788999999999999873222222 2 2368889
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhcCccchHHHH--hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC
Q 048113 86 LLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA--SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC 163 (339)
Q Consensus 86 Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~ 163 (339)
++..|.+ +.++..|+.++.+++.. ++..+. -...++.|..++.+.. -+...+..+..++..++..
T Consensus 534 l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~---------~~~~~~~~~~eai~~i~~~ 600 (963)
T 2x19_B 534 VLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQI---------HKTSQCMWLMQALGFLLSA 600 (963)
T ss_dssp HHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTC---------SCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCC---------CChHHHHHHHHHHHHHHhc
Confidence 9988855 78999999999999852 223222 1345666667776521 3577888888888888653
Q ss_pred C--CChHHHHhcCcHHHHHHHhhc---cccCchHHH---HHHHHHH---HhhcCC-H------------------hhhHH
Q 048113 164 H--QLISPIVSSGVTYCLLQLIHS---SEKSSGLTE---KAIALLE---NIVSSS-E------------------DALQE 213 (339)
Q Consensus 164 ~--~~~~~i~~~g~i~~Lv~ll~~---~~~~~~~~~---~a~~~L~---n~l~~~-~------------------~~~~~ 213 (339)
. +......+ ..++++...+.. ...+++... ..+.+|+ ..+... + .....
T Consensus 601 ~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (963)
T 2x19_B 601 LQVEEILKNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV 679 (963)
T ss_dssp SCHHHHHHHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH
Confidence 2 22222221 344455544432 111222222 3333333 122211 0 01111
Q ss_pred HHhhCCcHHHHHHHhhc--CChHHHHHHHHHHHHhhcc
Q 048113 214 IAATCGAIRALVETIEE--GSPQCKEHAVAILLLICKS 249 (339)
Q Consensus 214 i~~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~ 249 (339)
+. ....+.+..++.. .++.+.+.++.++..+...
T Consensus 680 ~~--~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~ 715 (963)
T 2x19_B 680 VL--QQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKT 715 (963)
T ss_dssp HH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHh
Confidence 22 2355666666653 4578888888888887643
No 92
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.62 E-value=0.076 Score=44.81 Aligned_cols=190 Identities=17% Similarity=0.102 Sum_probs=133.1
Q ss_pred CHHHHHHHHHHHHHHHHH--HHHHH--HhcCChHHHHH-Hhcc------C-----CHHHHHHHHHHHHHhccCCcchhhH
Q 048113 13 ERETQIQAANELGKLSRR--QKHKL--VERGIIAPLIS-MLCS------Q-----DYEAIEAALLSLLSLACGSERNKIR 76 (339)
Q Consensus 13 ~~~~~~~a~~~L~~l~~~--~~~~i--~~~g~i~~Lv~-lL~~------~-----~~~~~~~A~~~L~~Ls~~~~~~~~~ 76 (339)
+++.|..|+..|+.--.. .-..+ ..-|.+..|++ ..+- + ...-..+|+..|..++. +|+.|..
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence 555677776665442221 22222 24666666643 2221 1 12334567777888888 6999999
Q ss_pred HhhcCChHHHHHhhcCCC-----hhHHHHHHHHHHHHhcCcc--chHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHH
Q 048113 77 IVKSGIVPVLLEVLQCQS-----TTLIELTVAAMLILSSCLE--NKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQA 149 (339)
Q Consensus 77 i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~ 149 (339)
+.++...-.|-++|+..+ +-+|..+++.++.|...++ .-..+.+.+.+|..++.+.. ++.-.
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~-----------GselS 161 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMES-----------GSELS 161 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHH-----------SCHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhh-----------ccHHH
Confidence 999999888888887654 4588899999999986443 23344478899999999999 89999
Q ss_pred HHHHHHHHHhhcCCCCChHHHHhc-C-------cHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHh
Q 048113 150 KIDAIATLHNLSTCHQLISPIVSS-G-------VTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAA 216 (339)
Q Consensus 150 ~~~a~~~L~nLs~~~~~~~~i~~~-g-------~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~ 216 (339)
+..|.-.+..+-.++.+...++.. . ++..+|.-+... ++..+..+.+++.- -++.++..|..+.+
T Consensus 162 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~-ps~RLLKhiircYl-RLsdn~rar~aL~~ 234 (268)
T 2fv2_A 162 KTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKE-PSARLLKHVVRCYL-RLSDNPRAREALRQ 234 (268)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTS-CCHHHHHHHHHHHH-HHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence 999999999988787777666653 2 333344444333 46788999999988 79999999988864
No 93
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.60 E-value=0.018 Score=54.26 Aligned_cols=241 Identities=13% Similarity=0.145 Sum_probs=148.6
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhc--CChHHHHHhh--cC-----C---ChhHHHHHHHHHHHH
Q 048113 41 IAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKS--GIVPVLLEVL--QC-----Q---STTLIELTVAAMLIL 108 (339)
Q Consensus 41 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~--g~i~~Lv~lL--~~-----~---~~~~~~~a~~~L~nL 108 (339)
...|+.-|-++..++|.-|+.+|+.+-+............ +..-.|+-++ +. + -..+|+.|+.+|..+
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL 255 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI 255 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH
Confidence 3456666667899999999999998877432111111111 2233333322 21 1 145899999999888
Q ss_pred hcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHH-hcCcHHHHHHHhhccc
Q 048113 109 SSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIV-SSGVTYCLLQLIHSSE 187 (339)
Q Consensus 109 s~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~ll~~~~ 187 (339)
..-+.. ..++..|+..+.. ...+++..++-.|..+ .+.+. =.++++.++.-|.+.
T Consensus 256 -~hLp~e-----~~IL~qLV~~l~~-----------~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~- 311 (800)
T 3oc3_A 256 -YPLIGP-----NDIIEQLVGFLDS-----------GDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSP- 311 (800)
T ss_dssp -TTTSCS-----CCHHHHHTTGGGC-----------SCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCS-
T ss_pred -HhCChh-----HHHHHHHHhhcCC-----------CCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCc-
Confidence 422222 4556666666666 7899999999999998 11111 135677777777774
Q ss_pred cCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC-C-hHHHHHHHHHHHHhhccCchhHHHHHHhcCChH
Q 048113 188 KSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEG-S-PQCKEHAVAILLLICKSCRDKYRSSILKEGVMP 265 (339)
Q Consensus 188 ~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~ 265 (339)
+++++..|+.+|. -++ .++.. ...+..+.+.|.+- + ..........|..|+..+.. .......+|
T Consensus 312 -DDDVRAVAAetLi-PIA-~p~~l------~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~----a~~dp~LVP 378 (800)
T 3oc3_A 312 -DEDIKLLSAELLC-HFP-ITDSL------DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE----LSIPPERLK 378 (800)
T ss_dssp -SHHHHHHHHHHHT-TSC-CSSTH------HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT----CCCCSGGGG
T ss_pred -ccHHHHHHHHHhh-hhc-chhhH------HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc----cccChHHHH
Confidence 5789999999888 555 22111 12344555555432 1 11223344555666655321 111236899
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcC-cccchHHHHHHH
Q 048113 266 GLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEG-DTVAGTTLRLVE 330 (339)
Q Consensus 266 ~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~a~~~l~ 330 (339)
.|...+++.-+.+|..++.+|..+. ....+.-+.+.+.+|. +++...+.++|.
T Consensus 379 RL~PFLRHtITSVR~AVL~TL~tfL------------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 379 DIFPCFTSPVPEVRTSILNMVKNLS------------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GTGGGGTCSSHHHHHHHHHHTTTCC------------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHhhhcCCcHHHHHHHHHHHHHHH------------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999999999999999886665 2345556666666654 677777777774
No 94
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.48 E-value=0.067 Score=54.75 Aligned_cols=220 Identities=10% Similarity=0.109 Sum_probs=125.6
Q ss_pred CCCHHHHHHHHHHHHHHHHH--HHHHHHhc-----CChHH----HHHHhccC---CHHHHHHHHHHHHHhccCCcchhhH
Q 048113 11 NGERETQIQAANELGKLSRR--QKHKLVER-----GIIAP----LISMLCSQ---DYEAIEAALLSLLSLACGSERNKIR 76 (339)
Q Consensus 11 s~~~~~~~~a~~~L~~l~~~--~~~~i~~~-----g~i~~----Lv~lL~~~---~~~~~~~A~~~L~~Ls~~~~~~~~~ 76 (339)
+.+|..+..|+.+++.++.+ ........ ...+. ++..+.++ ++.+|..|+++++.++..-+ ...
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~~ 493 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KAQ 493 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HHH
Confidence 67888899999999888743 11100000 22222 23334566 89999999999999998421 221
Q ss_pred HhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc---------chHHHH--hcchHHHHHHHhcCCCCCCCCccCCC
Q 048113 77 IVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE---------NKLEIA--SSGAIQRLVEILNGDLADDDNSYGRI 145 (339)
Q Consensus 77 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~---------~~~~i~--~~g~i~~Lv~ll~~~~~~~~~~~~~~ 145 (339)
-..+++.++..|.++++.++..|+.+|.+++.... .+..+. -...++.|+.+++..+ +
T Consensus 494 --l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~---------~ 562 (960)
T 1wa5_C 494 --LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHG---------S 562 (960)
T ss_dssp --HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTC---------C
T ss_pred --HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhcc---------C
Confidence 23467888888888889999999999999986321 233332 2346777778877620 0
Q ss_pred C-HH--HHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhcc---ccCchHHHHHHHHHHHhhcC--CHhhhHHHHh
Q 048113 146 S-VQ--AKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSS---EKSSGLTEKAIALLENIVSS--SEDALQEIAA 216 (339)
Q Consensus 146 ~-~~--~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~---~~~~~~~~~a~~~L~n~l~~--~~~~~~~i~~ 216 (339)
. .+ ....++.+|..++. ..+....... ..++.|+..+... +.+......++.+++ .+.. .++....+.+
T Consensus 563 ~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~-~l~~~~~~~~~~~~~~ 640 (960)
T 1wa5_C 563 SPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIG-AILNYTQRQNLPLLVD 640 (960)
T ss_dssp CHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH-HHHHTSCGGGHHHHHH
T ss_pred CCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH-HHHhcCCcchHHHHHH
Confidence 1 11 22345555555433 2222222211 2455666655431 223445555666666 3332 3444444443
Q ss_pred hCCcHHHHHHHhhcCChHHHHHHHHHHHHhh
Q 048113 217 TCGAIRALVETIEEGSPQCKEHAVAILLLIC 247 (339)
Q Consensus 217 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 247 (339)
..+|.+...|+.......+.+..++..+.
T Consensus 641 --~~~p~~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 641 --SMMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp --HHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 46788888887765556666666555544
No 95
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.32 E-value=0.15 Score=43.10 Aligned_cols=195 Identities=16% Similarity=0.135 Sum_probs=123.1
Q ss_pred CHHHHHHHHHHHHHhccCCcchhh-HHhhcCChHHHHHhhcC-------CC--hh---HHHHHHHHHHHHhcCccchHHH
Q 048113 52 DYEAIEAALLSLLSLACGSERNKI-RIVKSGIVPVLLEVLQC-------QS--TT---LIELTVAAMLILSSCLENKLEI 118 (339)
Q Consensus 52 ~~~~~~~A~~~L~~Ls~~~~~~~~-~i~~~g~i~~Lv~lL~~-------~~--~~---~~~~a~~~L~nLs~~~~~~~~i 118 (339)
+++.|+.|+..|..=-...++-.. ....-|.+..|++=+-+ ++ .. -..+|+..|-.++++++.|..+
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~F 93 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAF 93 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHH
Confidence 455688775554432221222222 23345778777653321 11 11 2356666667778888889989
Q ss_pred HhcchHHHHHHHhcCCCCCCCCccCCCC---HHHHHHHHHHHHhhcCC--CCChHHHHhcCcHHHHHHHhhccccCchHH
Q 048113 119 ASSGAIQRLVEILNGDLADDDNSYGRIS---VQAKIDAIATLHNLSTC--HQLISPIVSSGVTYCLLQLIHSSEKSSGLT 193 (339)
Q Consensus 119 ~~~g~i~~Lv~ll~~~~~~~~~~~~~~~---~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 193 (339)
.+....-.|-.+|...+ .+ ...|..++++++.|.+. ++....+.+.+++|..++.|..+ ++--+
T Consensus 94 l~a~iplyLyPfL~t~s---------k~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G--selSK 162 (268)
T 2fv2_A 94 LAAHIPLFLYPFLHTVS---------KTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG--SELSK 162 (268)
T ss_dssp HHTTGGGGTHHHHHCCC---------CSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS--CHHHH
T ss_pred HHccchHHhhhhhcccc---------CCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc--cHHHH
Confidence 88887777777776632 22 45778899999999873 34556778889999999999986 35556
Q ss_pred HHHHHHHHHhhcCCHhhhHHHHhhC-------CcHHHHHHH-hhcCChHHHHHHHHHHHHhhccCchhHHHHHHh
Q 048113 194 EKAIALLENIVSSSEDALQEIAATC-------GAIRALVET-IEEGSPQCKEHAVAILLLICKSCRDKYRSSILK 260 (339)
Q Consensus 194 ~~a~~~L~n~l~~~~~~~~~i~~~~-------g~i~~Lv~l-L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 260 (339)
..|..++. .+-.++.+-..+..+. .++..+|.- .+.++++.-.+.+.|-..|+.+ +..|+.+..
T Consensus 163 tvAtfIlq-KIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn--~rar~aL~~ 234 (268)
T 2fv2_A 163 TVATFILQ-KILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN--PRAREALRQ 234 (268)
T ss_dssp HHHHHHHH-HHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS--HHHHHHHHH
T ss_pred HHHHHHHH-HHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC--HHHHHHHHH
Confidence 66777777 4444444444433221 234444443 3457889999999999999876 445666554
No 96
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=96.06 E-value=0.39 Score=40.27 Aligned_cols=171 Identities=13% Similarity=0.146 Sum_probs=107.9
Q ss_pred HHHHHHHcCCCHH-HHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhccC-----------CHHHHHHHHHHHHHh
Q 048113 3 EMLMDNLLNGERE-TQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCSQ-----------DYEAIEAALLSLLSL 66 (339)
Q Consensus 3 ~~Lv~~L~s~~~~-~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~~-----------~~~~~~~A~~~L~~L 66 (339)
+++|..|++.... ...+-+..|+...+. --+.| ..+|+..|+..|..- +...+...+++|+.+
T Consensus 3 ~~yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkal 81 (233)
T 2f31_A 3 MMYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 81 (233)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH
Confidence 4567888765322 222223333332232 12233 467888888877531 346788899999999
Q ss_pred ccCCcchhhHHhhc-CChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc--c-hHHHH----------hcchHHHHHHHhc
Q 048113 67 ACGSERNKIRIVKS-GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE--N-KLEIA----------SSGAIQRLVEILN 132 (339)
Q Consensus 67 s~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~--~-~~~i~----------~~g~i~~Lv~ll~ 132 (339)
.. +..+...+... +++..++..|.++++.++..++..|.-++..+. + ...|. +..-...+++.++
T Consensus 82 mn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~ 160 (233)
T 2f31_A 82 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 160 (233)
T ss_dssp TS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred hC-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHh
Confidence 98 67777777664 789999999999999999999999988886443 4 44443 1223445666665
Q ss_pred CCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCC-------hHHHHhcCcHHHHHHHhhcc
Q 048113 133 GDLADDDNSYGRISVQAKIDAIATLHNLSTCHQL-------ISPIVSSGVTYCLLQLIHSS 186 (339)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~-------~~~i~~~g~i~~Lv~ll~~~ 186 (339)
+. .+.+.+..++..+-.+...++. |..+...|. ..++..++..
T Consensus 161 ~~----------~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl-~~il~~l~~~ 210 (233)
T 2f31_A 161 SG----------TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL-HQVLQELREI 210 (233)
T ss_dssp TT----------SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH-HHHHHHHHHC
T ss_pred cC----------ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh-HHHHHHHhcc
Confidence 42 6778888777777777665543 234445564 4444555543
No 97
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.06 E-value=1.4 Score=44.83 Aligned_cols=137 Identities=13% Similarity=0.123 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhc-cccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHH
Q 048113 145 ISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHS-SEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRA 223 (339)
Q Consensus 145 ~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~ 223 (339)
.+...++.++.++..++...... ....++.++..+.. ..+++.++..++.+++ ..+..-....... ..+++.
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~-~~~~~l~~~~~~l--~~vl~~ 533 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIG-ALSEWLADHPVMI--NSVLPL 533 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHH-HTHHHHHHCHHHH--TTTHHH
T ss_pred CchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHH-HHHHHHHhCHHHH--HHHHHH
Confidence 57888999999999997632210 02344555555422 1125678888899998 4544322222444 368889
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc--CCHHHHHHHHHHHHHHhcc
Q 048113 224 LVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD--GTWRAKNMARDLLLLLRDC 292 (339)
Q Consensus 224 Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~A~~~L~~l~~~ 292 (339)
++..|.+ +.++..|+.++.++|...+......+ ...+..|..++.. .+...+.....++..+...
T Consensus 534 l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~ 600 (963)
T 2x19_B 534 VLHALGN--PELSVSSVSTLKKICRECKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSA 600 (963)
T ss_dssp HHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhc
Confidence 9988865 88999999999999965332111100 1234445555554 3567788888888777653
No 98
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.05 E-value=0.62 Score=47.93 Aligned_cols=142 Identities=8% Similarity=0.040 Sum_probs=85.7
Q ss_pred CCHHHHHHHHHHHHHHHHH-HH--HHHHhcCChHHHHHHhcc-----CCHHHHHHHHHHHHHhccCCcchhhHHhhcCCh
Q 048113 12 GERETQIQAANELGKLSRR-QK--HKLVERGIIAPLISMLCS-----QDYEAIEAALLSLLSLACGSERNKIRIVKSGIV 83 (339)
Q Consensus 12 ~~~~~~~~a~~~L~~l~~~-~~--~~i~~~g~i~~Lv~lL~~-----~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i 83 (339)
.+|..++.++.+++.++.. .. ..-.=..+++.|+.++.+ ....++..++++++..+.--..+.. + =..++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~-~-L~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-F-LRTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH-H-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH-H-HHHHH
Confidence 5899999999999999875 22 211224566777787753 2334555677888776652111111 1 11244
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHh------cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113 84 PVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIAS------SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL 157 (339)
Q Consensus 84 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~------~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L 157 (339)
..|+..+..+++.++..|++++.+++. .++..+.. ...++.++..+....+ .-....+..+..++
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~-------~l~~~~~~~lyeai 613 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTA-------DLQPQQVHTFYKAC 613 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHT-------TSCHHHHHHHHHHH
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHH-------hCCHHHHHHHHHHH
Confidence 556666666678899999999999997 34444432 1245544443322000 04666667788888
Q ss_pred HhhcCCC
Q 048113 158 HNLSTCH 164 (339)
Q Consensus 158 ~nLs~~~ 164 (339)
..+....
T Consensus 614 ~~vi~~~ 620 (1023)
T 4hat_C 614 GIIISEE 620 (1023)
T ss_dssp HHHHTTC
T ss_pred HHHHHhC
Confidence 8876643
No 99
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.00 E-value=0.35 Score=42.55 Aligned_cols=207 Identities=12% Similarity=0.072 Sum_probs=152.2
Q ss_pred hHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc-chH---HHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHH
Q 048113 75 IRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE-NKL---EIASSGAIQRLVEILNGDLADDDNSYGRISVQAK 150 (339)
Q Consensus 75 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~-~~~---~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~ 150 (339)
..+...+.+..|+..|..=+-+.+..+..+..++..... .+. ..... --+.|..++... +++++-
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~-~peil~~L~~gY----------e~~diA 140 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT-QQNILFMLLKGY----------ESPEIA 140 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT-CTHHHHHHHHGG----------GSTTTH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc-CHHHHHHHHHhh----------ccchhH
Confidence 345667899999999999899999999999888875432 221 11122 122333344443 456666
Q ss_pred HHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHh--hCCcHHHHHHHh
Q 048113 151 IDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAA--TCGAIRALVETI 228 (339)
Q Consensus 151 ~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~--~~g~i~~Lv~lL 228 (339)
..+-..|+.....+...+.+...+.+..+.+.++.+ .-++...|..++..++..+..-...... ...++...-++|
T Consensus 141 l~~G~mLRecir~e~la~~iL~~~~f~~fF~yv~~~--~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll 218 (341)
T 1upk_A 141 LNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMS--TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL 218 (341)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCS--SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCC--CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHh
Confidence 677777888888888888888888888999998874 5889999999999888888776666654 124567777899
Q ss_pred hcCChHHHHHHHHHHHHhhccCch-hHHHHHHh-cCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCC
Q 048113 229 EEGSPQCKEHAVAILLLICKSCRD-KYRSSILK-EGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSS 294 (339)
Q Consensus 229 ~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 294 (339)
.+++=-++..++..|..+-.+..+ ......+. ..-+..++.++++.+..+|..|-.+...+..++.
T Consensus 219 ~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 219 HSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp TCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred cCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence 998888899999999988765322 12222222 3467788899999999999999999999987664
No 100
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.90 E-value=0.7 Score=41.84 Aligned_cols=171 Identities=13% Similarity=0.123 Sum_probs=110.9
Q ss_pred HHHHHHHcCCCH-HHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhcc-----------CCHHHHHHHHHHHHHh
Q 048113 3 EMLMDNLLNGER-ETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCS-----------QDYEAIEAALLSLLSL 66 (339)
Q Consensus 3 ~~Lv~~L~s~~~-~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~A~~~L~~L 66 (339)
+.++..|+++.. +...+.+..|+.-... --+.|. .+|+..|+..|.. .+...+...+++|+.+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 346777776532 2223344444443333 113344 6778888888752 2457788899999999
Q ss_pred ccCCcchhhHHhhc-CChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc--c-hHHHH----------hcchHHHHHHHhc
Q 048113 67 ACGSERNKIRIVKS-GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE--N-KLEIA----------SSGAIQRLVEILN 132 (339)
Q Consensus 67 s~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~--~-~~~i~----------~~g~i~~Lv~ll~ 132 (339)
.. +..+...+... ..+..|+..|.++.+.++..++..|.-++..+. + ...+. +..-...++..++
T Consensus 148 mN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~ 226 (383)
T 3eg5_B 148 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 226 (383)
T ss_dssp TS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred hc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 88 67777777665 789999999999999999999999988886443 3 44333 2234566777776
Q ss_pred CCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCC---h----HHHHhcCcHHHHHHHhhcc
Q 048113 133 GDLADDDNSYGRISVQAKIDAIATLHNLSTCHQL---I----SPIVSSGVTYCLLQLIHSS 186 (339)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~---~----~~i~~~g~i~~Lv~ll~~~ 186 (339)
+. .+.+.+..++..+-.+...++. | ..+...|..+.+- -|+..
T Consensus 227 ~~----------~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~-~lr~~ 276 (383)
T 3eg5_B 227 SG----------TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQ-ELREI 276 (383)
T ss_dssp TT----------SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHH-HHTTS
T ss_pred cc----------CcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHH-HHhcC
Confidence 63 5778888777777767665443 2 3344556555444 46654
No 101
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.84 E-value=0.1 Score=44.75 Aligned_cols=176 Identities=13% Similarity=0.111 Sum_probs=118.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHhcC-ChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh--
Q 048113 3 EMLMDNLLNGERETQIQAANELGKLSRRQK-HKLVERG-IIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV-- 78 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~-~~i~~~g-~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~-- 78 (339)
+.+...|-+.|+..+.+|+..|......+. ..+...+ .++++.--+.+.++.+...++..|..+...-.+.-..+.
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 345677778899999999999998776633 3333333 344443234466888888888888776431011001121
Q ss_pred h-cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113 79 K-SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL 157 (339)
Q Consensus 79 ~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L 157 (339)
+ .-.+|.|+.-+..+-+.+|..+-.++..+.... .-....+.++.-+++ .+...+..++..+
T Consensus 129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~------~~~~v~~~l~~g~ks-----------KN~R~R~e~l~~l 191 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV------GPLKMTPMLLDALKS-----------KNARQRSECLLVI 191 (266)
T ss_dssp HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHGGGC-----------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHcc-----------CCHHHHHHHHHHH
Confidence 1 236899999998888888888887776665311 122357778887777 7899999999998
Q ss_pred HhhcCCCCChHHHHhcCcH---HHHHHHhhccccCchHHHHHHHHHH
Q 048113 158 HNLSTCHQLISPIVSSGVT---YCLLQLIHSSEKSSGLTEKAIALLE 201 (339)
Q Consensus 158 ~nLs~~~~~~~~i~~~g~i---~~Lv~ll~~~~~~~~~~~~a~~~L~ 201 (339)
..+-...... ...++ +.+.+++.+. +..++..|+.++.
T Consensus 192 ~~li~~~G~~----~~~~l~~~~~ia~ll~D~--d~~VR~aAl~~lv 232 (266)
T 2of3_A 192 EYYITNAGIS----PLKSLSVEKTVAPFVGDK--DVNVRNAAINVLV 232 (266)
T ss_dssp HHHHHHHCSG----GGGGGCHHHHHGGGGGCS--SHHHHHHHHHHHH
T ss_pred HHHHHhcCCC----ccccccchHHHHHHHcCC--CHHHHHHHHHHHH
Confidence 8874421111 13467 8999999874 5889999988887
No 102
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=95.82 E-value=1.8 Score=44.00 Aligned_cols=136 Identities=10% Similarity=-0.006 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHh---hccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcH
Q 048113 145 ISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLI---HSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAI 221 (339)
Q Consensus 145 ~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll---~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i 221 (339)
.+...++.|+.++..++....... ...++.++.++ ...+.++.++..++.+++ ..+..-........ .++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~-~~~~~l~~~~~~l~--~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMG-SYCNWLMENPAYIP--PAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHH-HTHHHHC----CHH--HHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHH-HHHHHHhcCHHHHH--HHH
Confidence 466788999999999876322111 13444455444 211125778888999888 44432111112222 356
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc--CCHHHHHHHHHHHHHHhcc
Q 048113 222 RALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD--GTWRAKNMARDLLLLLRDC 292 (339)
Q Consensus 222 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~A~~~L~~l~~~ 292 (339)
+.|+..| + +.++..|+.++.++|...+...... -...+..|.+++.. .+...+..+..++..+...
T Consensus 549 ~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~--~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 549 NLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPY--ADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHH--HHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 6677766 3 7789999999999996543322111 13456666677776 3577888888888777653
No 103
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.81 E-value=0.12 Score=44.24 Aligned_cols=132 Identities=9% Similarity=0.046 Sum_probs=97.3
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHH-HHH--HHH--h-cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113 8 NLLNGERETQIQAANELGKLSRR-QKH--KLV--E-RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSG 81 (339)
Q Consensus 8 ~L~s~~~~~~~~a~~~L~~l~~~-~~~--~i~--~-~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g 81 (339)
.+.+.+..+...++.+|..+... ... .+. + .-.+|.|+.-+.+....+|..+-.++..++.-.+.. .
T Consensus 95 r~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~-------~ 167 (266)
T 2of3_A 95 RFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------K 167 (266)
T ss_dssp HTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------H
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH-------H
Confidence 34478999999999999987654 111 111 1 347788898888888889988888877776522222 2
Q ss_pred ChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchH---HHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113 82 IVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAI---QRLVEILNGDLADDDNSYGRISVQAKIDAIATLH 158 (339)
Q Consensus 82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i---~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~ 158 (339)
+.+.++.-+.+.+...++.++..+..+-...... -..++ +.+.+++.+ .+..+|..|+.++.
T Consensus 168 v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D-----------~d~~VR~aAl~~lv 232 (266)
T 2of3_A 168 MTPMLLDALKSKNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGD-----------KDVNVRNAAINVLV 232 (266)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGC-----------SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcC-----------CCHHHHHHHHHHHH
Confidence 5567888888899999999999998886433222 13467 999999988 89999999999998
Q ss_pred hhc
Q 048113 159 NLS 161 (339)
Q Consensus 159 nLs 161 (339)
.+-
T Consensus 233 e~y 235 (266)
T 2of3_A 233 ACF 235 (266)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 104
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=95.76 E-value=0.69 Score=47.18 Aligned_cols=259 Identities=11% Similarity=0.029 Sum_probs=131.8
Q ss_pred CCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh--cCChHHHHH
Q 048113 12 GERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK--SGIVPVLLE 88 (339)
Q Consensus 12 ~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~--~g~i~~Lv~ 88 (339)
..+.+|..+++++..++.. ....-.-..+++.|+..++ +.++..|+.++..++... +..+.. .+.+..+..
T Consensus 518 ~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~---~~~l~p~~~~ll~~l~~ 591 (971)
T 2x1g_F 518 LNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN---SSMSAQATLGLKELCRDC---QLQLKPYADPLLNACHA 591 (971)
T ss_dssp SCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHH---HHhccccHHHHHHHHHH
Confidence 4889999999999999875 2211011234556666662 678999999999999732 233321 245556667
Q ss_pred hhcCC--ChhHHHHHHHHHHHHhcCc--cchHHHHhcchHHHHHH----HhcCCCCCCCCccCCCCHHHHHH---HHHHH
Q 048113 89 VLQCQ--STTLIELTVAAMLILSSCL--ENKLEIASSGAIQRLVE----ILNGDLADDDNSYGRISVQAKID---AIATL 157 (339)
Q Consensus 89 lL~~~--~~~~~~~a~~~L~nLs~~~--~~~~~i~~~g~i~~Lv~----ll~~~~~~~~~~~~~~~~~~~~~---a~~~L 157 (339)
++.++ +...+..+..++..++..- +.+.... ...+++++. ++++.. .+.+.+.. ++..|
T Consensus 592 ~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~---------~~~~~~~~~~~~l~~L 661 (971)
T 2x1g_F 592 SLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL-DIIVSPCFEELQAICQADS---------KTPAARIRTIFRLNMI 661 (971)
T ss_dssp HHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH-HHHHHHHHHHHHHHHTC------------CHHHHHHHHHHHHHH
T ss_pred HHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHHHHHhcCC---------CChhhHHHHHHHHHHH
Confidence 77764 4678888888988887532 2222221 123344443 333310 03333333 33333
Q ss_pred HhhcC--CC---CC------hH--HHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHH
Q 048113 158 HNLST--CH---QL------IS--PIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRAL 224 (339)
Q Consensus 158 ~nLs~--~~---~~------~~--~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~L 224 (339)
..+.. .+ ++ .. .-....+++.+..++.....+..+.+.++.++++ ++..-. ..+ ...++.+
T Consensus 662 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~-~~~~~~--~~~---~p~l~~~ 735 (971)
T 2x1g_F 662 STLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKH-AITNLR--SSF---QPMLQDL 735 (971)
T ss_dssp HHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHHH--C-----CTHHHHH
T ss_pred HHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-HHHhhh--hhc---cccHHHH
Confidence 33211 11 00 01 1112357777777776543356889999999984 332110 011 2346666
Q ss_pred HHHhhcC--ChHHHHHHHHHHHHhhccCch--hHHHHHHh--cCChHHHHHhhhc-------CCHHHHHHHHHHHHHHhc
Q 048113 225 VETIEEG--SPQCKEHAVAILLLICKSCRD--KYRSSILK--EGVMPGLLQLSVD-------GTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 225 v~lL~~~--~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~--~g~i~~L~~ll~~-------~~~~~~~~A~~~L~~l~~ 291 (339)
+..+-.. +... ..+++.+..++...+. .....+.+ ...+.....++.. .+|++++..-..+..+..
T Consensus 736 ~~~l~~~~~~~~~-~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~ 814 (971)
T 2x1g_F 736 CLFIVASFQTRCC-APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIK 814 (971)
T ss_dssp HHHHHHHCC--CC-HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCc-hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHH
Confidence 6655321 1111 2345555555442222 12222222 1223333444433 267777777777766655
Q ss_pred cC
Q 048113 292 CS 293 (339)
Q Consensus 292 ~~ 293 (339)
..
T Consensus 815 ~~ 816 (971)
T 2x1g_F 815 KI 816 (971)
T ss_dssp SS
T ss_pred hC
Confidence 44
No 105
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.13 Score=44.23 Aligned_cols=141 Identities=11% Similarity=0.103 Sum_probs=96.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHH------HHHH--HHhcCChHHHHH-HhccCCHHHHHHHHHHHHHhccCCcchhh
Q 048113 5 LMDNLLNGERETQIQAANELGKLSRR------QKHK--LVERGIIAPLIS-MLCSQDYEAIEAALLSLLSLACGSERNKI 75 (339)
Q Consensus 5 Lv~~L~s~~~~~~~~a~~~L~~l~~~------~~~~--i~~~g~i~~Lv~-lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~ 75 (339)
+-..+.+.|..++..++.++..++.. .+.. ..-..+++.|+. .+.+..+.++..|..++..+... .....
T Consensus 60 lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~-~~~~~ 138 (278)
T 4ffb_C 60 FAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL-DTSIT 138 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHT-SSSSH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHh-cCcHH
Confidence 34555688999999999999988753 1222 223557777876 47888899999998888777652 21111
Q ss_pred HHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccch---HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHH
Q 048113 76 RIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENK---LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKID 152 (339)
Q Consensus 76 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~---~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~ 152 (339)
. .++.++..+.+.++.++..++..|..+...-..+ ..-.-...++.+.+++.+ .++.+|..
T Consensus 139 ~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d-----------~~~~VR~a 202 (278)
T 4ffb_C 139 Q-----SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGH-----------GDRNVRSQ 202 (278)
T ss_dssp H-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTC-----------SSHHHHHH
T ss_pred H-----HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhC-----------CcHHHHHH
Confidence 1 2456777788889999999999998876421111 111112345667778877 89999999
Q ss_pred HHHHHHhhcC
Q 048113 153 AIATLHNLST 162 (339)
Q Consensus 153 a~~~L~nLs~ 162 (339)
|..++..+-.
T Consensus 203 A~~l~~~ly~ 212 (278)
T 4ffb_C 203 TMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 106
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.69 E-value=1 Score=39.65 Aligned_cols=202 Identities=13% Similarity=0.116 Sum_probs=143.0
Q ss_pred HHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhH----Hhh-cCChHHHHHhhcCCChhHHHHHHHHHHH
Q 048113 33 HKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIR----IVK-SGIVPVLLEVLQCQSTTLIELTVAAMLI 107 (339)
Q Consensus 33 ~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~----i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~n 107 (339)
..+...+.+..|+..|..-+-+.|..+..+..++-.....++.. +.. ...+..|+..-+ ++++-..+-..|..
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRe 149 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHH
Confidence 34456788999999888889999999999999988854443322 222 133333333333 34455555566677
Q ss_pred HhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhc---CcHHHHHHHh
Q 048113 108 LSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSS---GVTYCLLQLI 183 (339)
Q Consensus 108 Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~---g~i~~Lv~ll 183 (339)
+..++.....+...+.+..+.+.++. .+-++...|..++..|-. +......+... .++...-++|
T Consensus 150 cir~e~la~~iL~~~~f~~fF~yv~~-----------~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll 218 (341)
T 1upk_A 150 CIRHEPLAKIILWSEQFYDFFRYVEM-----------STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL 218 (341)
T ss_dssp HHTSHHHHHHHHHSGGGGHHHHHTTC-----------SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcC-----------CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHh
Confidence 77777777777788888899999998 799999999999998844 44444444443 3566777888
Q ss_pred hccccCchHHHHHHHHHHHhhcCCHhhhHHH---HhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccC
Q 048113 184 HSSEKSSGLTEKAIALLENIVSSSEDALQEI---AATCGAIRALVETIEEGSPQCKEHAVAILLLICKSC 250 (339)
Q Consensus 184 ~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i---~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 250 (339)
.++ +--.+++++..|+. +-.+..|...+ +....-+..+..+|++.++.+|..|.-+..-+..++
T Consensus 219 ~S~--NYVTkRQSlKLLge-lLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 219 HSE--NYVTKRQSLKLLGE-LLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp TCS--SHHHHHHHHHHHHH-HHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred cCC--cchhHHHHHHHHHH-HHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 774 45678899999994 54454444333 333456888899999999999999999988877653
No 107
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.66 E-value=0.012 Score=50.01 Aligned_cols=64 Identities=13% Similarity=0.022 Sum_probs=38.1
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHH
Q 048113 7 DNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVL 86 (339)
Q Consensus 7 ~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~L 86 (339)
.++.++++++|..|+..+ ....+..+++++++.+|..++..| . .+.|
T Consensus 57 ~ll~d~~~~VR~~AA~~l---------------~~~~l~~L~~D~~~~VR~~aA~~L---~---------------~~~L 103 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS---------------PVEALTPLIRDSDEVVRRAVAYRL---P---------------REQL 103 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS---------------CGGGGGGGTTCSSHHHHHHHHTTS---C---------------SGGG
T ss_pred HHhcCCCHHHHHHHHHhC---------------CHHHHHHHccCcCHHHHHHHHHHC---C---------------HHHH
Confidence 445667777777777643 123345566666777776666431 1 1346
Q ss_pred HHhhcCCChhHHHHHHH
Q 048113 87 LEVLQCQSTTLIELTVA 103 (339)
Q Consensus 87 v~lL~~~~~~~~~~a~~ 103 (339)
..++..+++.++..++.
T Consensus 104 ~~ll~D~d~~VR~~aA~ 120 (244)
T 1lrv_A 104 SALMFDEDREVRITVAD 120 (244)
T ss_dssp GGTTTCSCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHH
Confidence 66667777777776665
No 108
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.26 E-value=0.35 Score=42.29 Aligned_cols=184 Identities=11% Similarity=0.050 Sum_probs=105.6
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChH----HHHHhhcC-CChhHHHHHHHHHHHHhcCccch
Q 048113 41 IAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVP----VLLEVLQC-QSTTLIELTVAAMLILSSCLENK 115 (339)
Q Consensus 41 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~----~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~ 115 (339)
+..+.++++. ..+.+-.++..++.+.. ++.....+.+.+.-. .+...+.+ ..+..+..++++++|+-..+..+
T Consensus 105 l~~l~kil~W-P~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~ 182 (304)
T 3ebb_A 105 LQILWKAINC-PEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ 182 (304)
T ss_dssp HHHHHHHHTS-CTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred HHHHHHHHcC-CHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence 3455555533 33456667777777777 466655555433222 33344433 24667889999999999888887
Q ss_pred HHHHhc--chHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCChHHHHhcCcHHHHHHHhhccccCchH
Q 048113 116 LEIASS--GAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQLISPIVSSGVTYCLLQLIHSSEKSSGL 192 (339)
Q Consensus 116 ~~i~~~--g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 192 (339)
..+... ..++.+...+.. .+..++..++..+.|++.. .+.+..=...-+...+..++... .+.+.
T Consensus 183 ~~l~~~~~~il~~~~~~~~~-----------~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~-~d~Ea 250 (304)
T 3ebb_A 183 KLMMSQRESLMSHAIELKSG-----------SNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVV-QDLEA 250 (304)
T ss_dssp HHHHHTHHHHHHHHHGGGSS-----------CCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTC-CCHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC-----------CChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcc-CCHHH
Confidence 766642 244444444444 6889999999999999752 11111000011344455555543 46788
Q ss_pred HHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc-CChHHHHHH
Q 048113 193 TEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE-GSPQCKEHA 239 (339)
Q Consensus 193 ~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a 239 (339)
...++.+|++++... .....+.+..|+-..+-...+. ..+++.+.+
T Consensus 251 lyR~LvALGtL~~~~-~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~ 297 (304)
T 3ebb_A 251 TFRLLVALGTLISDD-SNAVQLAKSLGVDSQIKKYSSVSEPAKVSECC 297 (304)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-hhHHHHHHHcCHHHHHHHHHhCCCchhHHHHH
Confidence 899999999544443 4344444434444433333333 235555543
No 109
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.15 E-value=1.2 Score=41.07 Aligned_cols=175 Identities=11% Similarity=-0.000 Sum_probs=105.9
Q ss_pred cCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHH
Q 048113 50 SQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVE 129 (339)
Q Consensus 50 ~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ 129 (339)
.+++..+.-|++.+..+.++.|+.... ++..++.++...+..+|..|...|..++.+ +.-.. .+..|++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~Q 107 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----VADILTQ 107 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHHH
Confidence 357888889999998888877776554 456799999999999999999998888876 33332 4778899
Q ss_pred HhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCH
Q 048113 130 ILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSE 208 (339)
Q Consensus 130 ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~ 208 (339)
+|+. +++.-....-.+|..|-. ++. |.+..|..-+..+ ++.+++.++.-|+..+-.-+
T Consensus 108 lLqt-----------dd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~--~e~~Rer~lkFi~~kl~~l~ 166 (507)
T 3u0r_A 108 LLQT-----------DDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQG--EDIVRERAIKFLSTKLKTLP 166 (507)
T ss_dssp HTTC-----------CCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHS--CHHHHHHHHHHHHHHGGGSC
T ss_pred HHhc-----------cchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHccc--chHHHHHHHHHHHHHHhhcc
Confidence 9988 666666666566665544 332 3444555555443 46888888887764442211
Q ss_pred -hhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHH
Q 048113 209 -DALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSS 257 (339)
Q Consensus 209 -~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 257 (339)
+....-++ .-++..+-+.|++-+..--......|..+-.......++.
T Consensus 167 ~~~l~~E~E-~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qe 215 (507)
T 3u0r_A 167 DEVLTKEVE-ELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQ 215 (507)
T ss_dssp TTTSCHHHH-HHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHH
T ss_pred hhhccHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHH
Confidence 11111111 1234455556655443333334455544443333333333
No 110
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=94.64 E-value=1.7 Score=39.37 Aligned_cols=175 Identities=14% Similarity=0.157 Sum_probs=110.8
Q ss_pred HHHHHHHcCCCHHHH-HHHHHHHHHHHHH-----HHHHHHhcCChHHHHHHhccC-----------CHHHHHHHHHHHHH
Q 048113 3 EMLMDNLLNGERETQ-IQAANELGKLSRR-----QKHKLVERGIIAPLISMLCSQ-----------DYEAIEAALLSLLS 65 (339)
Q Consensus 3 ~~Lv~~L~s~~~~~~-~~a~~~L~~l~~~-----~~~~i~~~g~i~~Lv~lL~~~-----------~~~~~~~A~~~L~~ 65 (339)
+++|..|++.....+ .+-+..|+...+. .+.+ . .+|+..|+.+|..- +...+...+++|+.
T Consensus 7 ~~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLka 84 (386)
T 2bnx_A 7 MMYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-G-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA 84 (386)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-H-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHH-H-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 456788876543322 1223333332232 3333 3 67788888877521 35678889999999
Q ss_pred hccCCcchhhHHhhc-CChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc--c-hHHHH----------hcchHHHHHHHh
Q 048113 66 LACGSERNKIRIVKS-GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE--N-KLEIA----------SSGAIQRLVEIL 131 (339)
Q Consensus 66 Ls~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~--~-~~~i~----------~~g~i~~Lv~ll 131 (339)
+.. +..+...+... +++..+...|.++.+.++..++..|..++..+. + ...|. +..-...++..+
T Consensus 85 lmN-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l 163 (386)
T 2bnx_A 85 FMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGL 163 (386)
T ss_dssp HTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHT
T ss_pred HhC-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHH
Confidence 998 67777766655 789999999999999999999988888886443 4 33332 222455677777
Q ss_pred cCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCC-------hHHHHhcCcHHHHHHHhhccccCchH
Q 048113 132 NGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQL-------ISPIVSSGVTYCLLQLIHSSEKSSGL 192 (339)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~-------~~~i~~~g~i~~Lv~ll~~~~~~~~~ 192 (339)
.+. .+.+.+..++..+-.+...++. |..+...|..+ ++.-|+... ++.+
T Consensus 164 ~~~----------~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~-il~~Lr~~~-~~~L 219 (386)
T 2bnx_A 164 KSG----------TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ-VLQELREIE-NEDM 219 (386)
T ss_dssp STT----------SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHH-HHHHHTTCC-CHHH
T ss_pred HcC----------ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHH-HHHHHhccC-ChhH
Confidence 643 6788888777777777665544 34455556444 455555542 3444
No 111
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=93.74 E-value=7.1 Score=40.15 Aligned_cols=233 Identities=13% Similarity=0.067 Sum_probs=114.0
Q ss_pred ChHHHHHHhccCCHHHHHHHHHHHHHhccC---CcchhhHHhh--cCChHHHHHhhcCCC-------------------h
Q 048113 40 IIAPLISMLCSQDYEAIEAALLSLLSLACG---SERNKIRIVK--SGIVPVLLEVLQCQS-------------------T 95 (339)
Q Consensus 40 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~---~~~~~~~i~~--~g~i~~Lv~lL~~~~-------------------~ 95 (339)
.++.++.....++.++...++.....++.. .+..+..+.. ...++.++..+..++ .
T Consensus 345 ~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~ 424 (1049)
T 3m1i_C 345 AHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKES 424 (1049)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccc
Confidence 345555555566778888888777776651 0111222111 123344444432211 0
Q ss_pred ---hHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCCh-HHHH
Q 048113 96 ---TLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLI-SPIV 171 (339)
Q Consensus 96 ---~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~-~~i~ 171 (339)
..+..+..+|..++..... .+ -.-..+.+-+.+.+.. .+...++.++.++..++..-... ..-.
T Consensus 425 d~~~~~~~~~~~L~~l~~~~~~--~~-l~~v~~~l~~~l~~~~---------~~W~~~eaal~algsia~~~~~~~e~~~ 492 (1049)
T 3m1i_C 425 DTIQLYKSEREVLVYLTHLNVI--DT-EEIMISKLARQIDGSE---------WSWHNINTLSWAIGSISGTMSEDTEKRF 492 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHH--HH-HHHHHHHHHHHHTSSS---------CCHHHHHHHHHHHHHTTTSSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCHH--HH-HHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHHHHhcccCchhhHHH
Confidence 1233455666666532111 00 0112333334443211 57888999999999887532111 1100
Q ss_pred hcCcHHHHHHHhhcc---ccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhc
Q 048113 172 SSGVTYCLLQLIHSS---EKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICK 248 (339)
Q Consensus 172 ~~g~i~~Lv~ll~~~---~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 248 (339)
-..+++.|..+.... .++..++..++.+++ ..+..-........ .+++.+++.+.++++.++..|+.++.++|.
T Consensus 493 l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lg-ry~~~~~~~~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 493 VVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVG-QYPRFLKAHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH-HCHHHHHHCHHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccchHHHHHHHHHHHH-HHHHHHHhHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 112333333322210 011222334667777 34332222223332 467778888888889999999999999997
Q ss_pred cCchhHHHHHHh------cCChHH----HHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113 249 SCRDKYRSSILK------EGVMPG----LLQLSVDGTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 249 ~~~~~~~~~~~~------~g~i~~----L~~ll~~~~~~~~~~A~~~L~~l~~ 291 (339)
.. +..+.. ...++. |..++..-+.........++..+..
T Consensus 570 ~~----~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 570 KC----KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp HH----THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HH----HHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 53 233331 022333 3344444445445555555555544
No 112
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.36 E-value=0.94 Score=37.89 Aligned_cols=146 Identities=16% Similarity=0.115 Sum_probs=96.4
Q ss_pred HHHHhcCcHHHHHHHhhccc---------cCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHH
Q 048113 168 SPIVSSGVTYCLLQLIHSSE---------KSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEH 238 (339)
Q Consensus 168 ~~i~~~g~i~~Lv~ll~~~~---------~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 238 (339)
+.+ ..||+..|+..|.... .+......++.+|. .+..+..+...+..+.+++..|...|.++++.++..
T Consensus 38 ~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLk-almn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~ 115 (233)
T 2f31_A 38 QTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLK-AFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMID 115 (233)
T ss_dssp HHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHH-HHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHH
T ss_pred HHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHH-HHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHH
Confidence 344 3577888887775421 12355677888898 777888888888887889999999998889999999
Q ss_pred HHHHHHHhhccCchhH-HHHHH----------hcCChHHHHHhhh-cCCHHHHHHHHHHHHHHhccCCCcch----hhhh
Q 048113 239 AVAILLLICKSCRDKY-RSSIL----------KEGVMPGLLQLSV-DGTWRAKNMARDLLLLLRDCSSFGSR----SKQL 302 (339)
Q Consensus 239 a~~~L~~l~~~~~~~~-~~~~~----------~~g~i~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~~~~----~~~~ 302 (339)
++..|..+|..+++.+ ...+. +..-..++++.+. +.+...+......+..+...++.-.. +.++
T Consensus 116 ~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef 195 (233)
T 2f31_A 116 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSEL 195 (233)
T ss_dssp HHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 9999998987653212 22222 2234555666665 34555666666666666665542111 2345
Q ss_pred hhHHHHHHHHHHH
Q 048113 303 KNELVEQIMQEID 315 (339)
Q Consensus 303 ~~~~~~~i~~~~~ 315 (339)
..-++..++..+.
T Consensus 196 ~~~Gl~~il~~l~ 208 (233)
T 2f31_A 196 MRLGLHQVLQELR 208 (233)
T ss_dssp HHTTHHHHHHHHH
T ss_pred HHCChHHHHHHHh
Confidence 5667777777765
No 113
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=93.25 E-value=1.9 Score=38.16 Aligned_cols=129 Identities=15% Similarity=0.141 Sum_probs=94.5
Q ss_pred HHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCcc
Q 048113 63 LLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSY 142 (339)
Q Consensus 63 L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 142 (339)
|.+|-.++...-.-+++.+|+..+...++.++.++....+..|...|....-+. .--...+|-++..+.-+
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~-t~L~e~LPFi~~~i~~h-------- 336 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK-TPLENILPFLLRLIEIH-------- 336 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT-SCCTTHHHHHHHHHHHC--------
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh-ccccccchHHHHHhccC--------
Confidence 445555467778889999999999999999999999999999988876443211 11234678888877654
Q ss_pred CCCCHHHHHHHHHHHHhhcCCC-CChHHHHhcCcHHHHHHHhhcccc-----CchHHHHHHHHHHH
Q 048113 143 GRISVQAKIDAIATLHNLSTCH-QLISPIVSSGVTYCLLQLIHSSEK-----SSGLTEKAIALLEN 202 (339)
Q Consensus 143 ~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~-----~~~~~~~a~~~L~n 202 (339)
++.++.....+.|.|..... ..++..+..|+++.|-+.+..+.+ +..-+..++++++|
T Consensus 337 --~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN 400 (619)
T 3c2g_A 337 --PDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN 400 (619)
T ss_dssp --CCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred --CCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence 78999999999999997654 556666778999999988765422 22334556677774
No 114
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.23 E-value=1.4 Score=39.87 Aligned_cols=147 Identities=16% Similarity=0.127 Sum_probs=99.9
Q ss_pred hHHHHhcCcHHHHHHHhhcc---------ccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHH
Q 048113 167 ISPIVSSGVTYCLLQLIHSS---------EKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKE 237 (339)
Q Consensus 167 ~~~i~~~g~i~~Lv~ll~~~---------~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 237 (339)
.+.++ .+|+..|+.+|..- ..+......++.+|. .+-.+..+...+..+..++..|...+.+..+.++.
T Consensus 103 V~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLk-almN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~ 180 (383)
T 3eg5_B 103 VQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLK-AFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMI 180 (383)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHH-HHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHH
T ss_pred HHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHH-HHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHH
Confidence 34555 66788888888531 112356677888898 67788888888888889999999999999999999
Q ss_pred HHHHHHHHhhccCc-hhHHHHHHh----------cCChHHHHHhhhc-CCHHHHHHHHHHHHHHhccCCCcchh----hh
Q 048113 238 HAVAILLLICKSCR-DKYRSSILK----------EGVMPGLLQLSVD-GTWRAKNMARDLLLLLRDCSSFGSRS----KQ 301 (339)
Q Consensus 238 ~a~~~L~~l~~~~~-~~~~~~~~~----------~g~i~~L~~ll~~-~~~~~~~~A~~~L~~l~~~~~~~~~~----~~ 301 (339)
.++..|..+|..+. ..+.+.+++ ..-...++..+.+ .+...+..+...+..+...++....+ .+
T Consensus 181 ~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~e 260 (383)
T 3eg5_B 181 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSE 260 (383)
T ss_dssp HHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999999998764 211232222 2456677777775 46666676677776666655422112 33
Q ss_pred hhhHHHHHHHHHHH
Q 048113 302 LKNELVEQIMQEID 315 (339)
Q Consensus 302 ~~~~~~~~i~~~~~ 315 (339)
+..-++..++..+.
T Consensus 261 f~~~Gl~~il~~lr 274 (383)
T 3eg5_B 261 LMRLGLHQVLQELR 274 (383)
T ss_dssp HHHTTHHHHHHHHT
T ss_pred HHHCChHHHHHHHh
Confidence 44566666666654
No 115
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=92.68 E-value=6.2 Score=36.49 Aligned_cols=119 Identities=19% Similarity=0.200 Sum_probs=76.6
Q ss_pred CCChhHHHHHHHHHHHHhc-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHH
Q 048113 92 CQSTTLIELTVAAMLILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPI 170 (339)
Q Consensus 92 ~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i 170 (339)
++++..+..|+..+..... .++.. ..++..+++++.. ++..+|..|++.|..+|.+ ++...+
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~-----~~Ai~a~lDLcED-----------ed~~IR~qaik~Lp~~ck~-~~i~ki 101 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELA-----DSAINAQLDLCED-----------EDVSIRRQAIKELPQFATG-ENLPRV 101 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGH-----HHHHHHHHHHHTC-----------SSHHHHHHHHHHGGGGCCT-TCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhc-----------ccHHHHHHHHHhhHHHhhh-hhhhhH
Confidence 4567888888888887764 44332 2368999999999 8999999999999999998 554444
Q ss_pred HhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHH
Q 048113 171 VSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAIL 243 (339)
Q Consensus 171 ~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 243 (339)
++.|+++|+..+ ..-....-.+|..++..++ .+.+..|...+.++++.+++.++.-|
T Consensus 102 -----aDvL~QlLqtdd--~~E~~~V~~sL~sllk~Dp---------k~tl~~lf~~i~~~~e~~Rer~lkFi 158 (507)
T 3u0r_A 102 -----ADILTQLLQTDD--SAEFNLVNNALLSIFKMDA---------KGTLGGLFSQILQGEDIVRERAIKFL 158 (507)
T ss_dssp -----HHHHHHHTTCCC--HHHHHHHHHHHHHHHHHCH---------HHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred -----HHHHHHHHhccc--hHHHHHHHHHHHHHHhcCh---------HHHHHHHHHHHcccchHHHHHHHHHH
Confidence 567899998742 2222222222221222222 23445555555555666666665555
No 116
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=92.20 E-value=5.9 Score=35.14 Aligned_cols=159 Identities=13% Similarity=0.096 Sum_probs=105.5
Q ss_pred HHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhh-cCChH
Q 048113 157 LHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIE-EGSPQ 234 (339)
Q Consensus 157 L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~ 234 (339)
|.||-. +.+..+-++..+++..+...+... +.++.+..+..|- .++....-...-. ...+|-+++.+. +++.+
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYp--N~~l~RaG~KLLL-QVSDaksL~~t~L--~e~LPFi~~~i~~h~eDd 340 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYP--NNDLIRAGCKLLL-QVSDAKALAKTPL--ENILPFLLRLIEIHPDDE 340 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSS--CHHHHHHHHHHHH-HHTTCGGGGTSCC--TTHHHHHHHHHHHCCCHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecC--CcHHHHhhhheee-eecchHHHhhccc--cccchHHHHHhccCCCcc
Confidence 344444 445567789999999999999874 5778888777776 4544332221111 245677777665 57788
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCC-------HHHHHHHHHHHHHHhc----------------
Q 048113 235 CKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGT-------WRAKNMARDLLLLLRD---------------- 291 (339)
Q Consensus 235 ~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~-------~~~~~~A~~~L~~l~~---------------- 291 (339)
+.....+.|.|......+ .++..+..|+++.|...+...+ ..-+..|++++.|.-+
T Consensus 341 vvYSGTGFLSNVVAHKq~-VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGq 419 (619)
T 3c2g_A 341 VIYSGTGFLSNVVAHKQH-VKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGE 419 (619)
T ss_dssp HHHHHHHHHHHHSTTCHH-HHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSC
T ss_pred eEEecchHHHHHHhcccc-hHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCc
Confidence 889999999999887644 7888889999999998865432 3335666666544311
Q ss_pred ---cCCCcc--hhhhhhhHHHHHHHHHHHhcCccc
Q 048113 292 ---CSSFGS--RSKQLKNELVEQIMQEIDAEGDTV 321 (339)
Q Consensus 292 ---~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~ 321 (339)
.+++++ ..+.+..+.+.++|..++.||=++
T Consensus 420 r~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv 454 (619)
T 3c2g_A 420 TKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDT 454 (619)
T ss_dssp CCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CC
T ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHhcccccCc
Confidence 011111 124456799999999998888444
No 117
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=91.81 E-value=1.9 Score=44.40 Aligned_cols=142 Identities=11% Similarity=0.025 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHHHHhhcCCCCC-hHHHHhcCcHHHHHHHhhccc-cCch--HHHHHHHHHHHhhcCCHhhhHHHHhhCCc
Q 048113 145 ISVQAKIDAIATLHNLSTCHQL-ISPIVSSGVTYCLLQLIHSSE-KSSG--LTEKAIALLENIVSSSEDALQEIAATCGA 220 (339)
Q Consensus 145 ~~~~~~~~a~~~L~nLs~~~~~-~~~i~~~g~i~~Lv~ll~~~~-~~~~--~~~~a~~~L~n~l~~~~~~~~~i~~~~g~ 220 (339)
.+...++.++.+++.++..... ...-.=..+++.|+.++.... ++.+ ++..++.+++ ..+..-........ ..
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lG-ry~~wl~~~~~~L~--~v 541 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVG-QYPRFLKAHWNFLR--TV 541 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-TCHHHHHHCHHHHH--HH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHH-HHHHHHhccHHHHH--HH
Confidence 5799999999999999864422 121111235777888775311 0122 3334557777 33332222223332 35
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHh------cCChHHHHH----hhhcCCHHHHHHHHHHHHHHh
Q 048113 221 IRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILK------EGVMPGLLQ----LSVDGTWRAKNMARDLLLLLR 290 (339)
Q Consensus 221 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~------~g~i~~L~~----ll~~~~~~~~~~A~~~L~~l~ 290 (339)
+..|++.+.++++.++..|++++.++|.. ++..+.. ...++.++. ....-++.....+..++..+.
T Consensus 542 l~~L~~~l~~~~~~v~~~A~~al~~l~~~----c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi 617 (1023)
T 4hat_C 542 ILKLFEFMHETHEGVQDMACDTFIKIVQK----CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1023)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHH----HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHH----HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 55666666667789999999999999964 3344432 123444433 333356666677777777776
Q ss_pred ccC
Q 048113 291 DCS 293 (339)
Q Consensus 291 ~~~ 293 (339)
...
T Consensus 618 ~~~ 620 (1023)
T 4hat_C 618 SEE 620 (1023)
T ss_dssp TTC
T ss_pred HhC
Confidence 654
No 118
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=91.41 E-value=0.93 Score=39.28 Aligned_cols=141 Identities=11% Similarity=0.074 Sum_probs=89.8
Q ss_pred HHHHcCC------CHHHHHHHHHHHHHHHHH--HHHHHHh--cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhh
Q 048113 6 MDNLLNG------ERETQIQAANELGKLSRR--QKHKLVE--RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKI 75 (339)
Q Consensus 6 v~~L~s~------~~~~~~~a~~~L~~l~~~--~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~ 75 (339)
.++++++ +.+....|+..|-.++++ +-..|.+ -..+..|+ +..+.++.+++.|++++...-.+||..-.
T Consensus 28 r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~ 106 (315)
T 3qml_C 28 RNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVE 106 (315)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHH
Confidence 4556666 556678899999999987 3334443 44444444 34456778999999999999999998877
Q ss_pred HHhhc--CChHHHHHhhcC-------CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCC
Q 048113 76 RIVKS--GIVPVLLEVLQC-------QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRIS 146 (339)
Q Consensus 76 ~i~~~--g~i~~Lv~lL~~-------~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~ 146 (339)
.+.+. ..+..+..-|.. ....++..-+.+|--|..+.. .+ ...++..|.+++.... .+
T Consensus 107 ~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~---------~d 173 (315)
T 3qml_C 107 FINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNN---------KD 173 (315)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTT---------TC
T ss_pred HHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCC---------CC
Confidence 77664 334444433322 233455666677777766541 11 2345677777776510 37
Q ss_pred HHHHHHHHHHHHhh
Q 048113 147 VQAKIDAIATLHNL 160 (339)
Q Consensus 147 ~~~~~~a~~~L~nL 160 (339)
+.++..++..+..+
T Consensus 174 ~~~k~Kvl~li~d~ 187 (315)
T 3qml_C 174 KQLQIKVLELISKI 187 (315)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777776655
No 119
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=90.88 E-value=0.11 Score=44.08 Aligned_cols=62 Identities=11% Similarity=0.057 Sum_probs=33.4
Q ss_pred HHHHHhccCCHHHHHHHHHHH-----HHhccC-CcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHH
Q 048113 43 PLISMLCSQDYEAIEAALLSL-----LSLACG-SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAA 104 (339)
Q Consensus 43 ~Lv~lL~~~~~~~~~~A~~~L-----~~Ls~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~ 104 (339)
.|..+++++++.+|..++..+ ..+..+ ++..|..+...-..+.+..++..++..++..++..
T Consensus 126 ~L~~L~~D~d~~VR~~aA~~l~~~~l~~l~~D~d~~VR~~aa~~l~~~ll~~ll~D~d~~VR~aaa~~ 193 (244)
T 1lrv_A 126 QLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASR 193 (244)
T ss_dssp GGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhcCHHHHHHHHcCCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHh
Confidence 344555666666666665531 122221 22334444444334555566677778888777754
No 120
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=90.32 E-value=8.6 Score=39.68 Aligned_cols=214 Identities=15% Similarity=0.121 Sum_probs=123.8
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCC----cchhhHHhh
Q 048113 5 LMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCS-QDYEAIEAALLSLLSLACGS----ERNKIRIVK 79 (339)
Q Consensus 5 Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~----~~~~~~i~~ 79 (339)
++.-+.+++.+.|..|-..|..+-. ..+++..+..+|.. .++++|.-|+.+|.+.-... +.....-++
T Consensus 33 lv~~ly~p~~~~r~qA~~~L~q~q~-------sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR 105 (1073)
T 3gjx_A 33 VVNCLYHGEGAQQRMAQEVLTHLKE-------HPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIK 105 (1073)
T ss_dssp HHHTTTCSSHHHHHHHHHHHHTSSC-------CSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHc-------CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHH
Confidence 4444456677777777777765542 34555555555644 48899999999998877621 122222223
Q ss_pred cCChHHHHHhhcC-----CChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHH
Q 048113 80 SGIVPVLLEVLQC-----QSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDA 153 (339)
Q Consensus 80 ~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a 153 (339)
...+..+...-.. .++.++...+.++..++..+ +.. =.+.++-++..++. ++......
T Consensus 106 ~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~----Wp~fi~dLv~~~~~------------~~~~~~~~ 169 (1073)
T 3gjx_A 106 KYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH----WPTFISDIVGASRT------------SESLCQNN 169 (1073)
T ss_dssp HHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT----CTTHHHHHHHHHHH------------CHHHHHHH
T ss_pred HHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh----ccHHHHHHHHHhCC------------CHHHHHHH
Confidence 3344444443222 23455566666776666321 111 13467777777754 45566777
Q ss_pred HHHHHhhcCC-CC--------C-----hHHHHhcCcHHHHHHH----hhccccCchHHHHHHHHHHHhhcCCHhhhHHHH
Q 048113 154 IATLHNLSTC-HQ--------L-----ISPIVSSGVTYCLLQL----IHSSEKSSGLTEKAIALLENIVSSSEDALQEIA 215 (339)
Q Consensus 154 ~~~L~nLs~~-~~--------~-----~~~i~~~g~i~~Lv~l----l~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~ 215 (339)
+.+|..|+.. -+ . +..+.+. ++.++.+ +.+. .+..+...++.++...++.-+- ..++
T Consensus 170 L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~~-~~~~lv~~~L~~L~~~~sWI~i--~~i~ 244 (1073)
T 3gjx_A 170 MVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVMENS-QNAPLVHATLETLLRFLNWIPL--GYIF 244 (1073)
T ss_dssp HHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTTSCT--HHHH
T ss_pred HHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHhcCH--HHhc
Confidence 7777777642 11 1 1223332 4444444 4433 3567788888999944443332 3456
Q ss_pred hhCCcHHHHH-HHhhcCChHHHHHHHHHHHHhhcc
Q 048113 216 ATCGAIRALV-ETIEEGSPQCKEHAVAILLLICKS 249 (339)
Q Consensus 216 ~~~g~i~~Lv-~lL~~~~~~~~~~a~~~L~~l~~~ 249 (339)
+ .+.++.|+ .+| +++..+..|+.||..+...
T Consensus 245 ~-~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 245 E-TKLISTLIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp S-SSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred c-chHHHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 5 67777774 555 4678999999999998764
No 121
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=89.73 E-value=4.2 Score=36.71 Aligned_cols=142 Identities=17% Similarity=0.122 Sum_probs=92.5
Q ss_pred cCcHHHHHHHhhcc----c-----cCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHH
Q 048113 173 SGVTYCLLQLIHSS----E-----KSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAIL 243 (339)
Q Consensus 173 ~g~i~~Lv~ll~~~----~-----~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 243 (339)
.+|+..|+.+|... . .+......++.+|. .+..+..+...+..+.+++..|...|.+.++.++..++..|
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLk-almN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL 124 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLK-AFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 124 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHH-HHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH-HHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 46777777777432 0 12355677888898 77788888888888788999999999888899999999999
Q ss_pred HHhhccCchhH-HHHHH----------hcCChHHHHHhhh-cCCHHHHHHHHHHHHHHhccCCCcch----hhhhhhHHH
Q 048113 244 LLICKSCRDKY-RSSIL----------KEGVMPGLLQLSV-DGTWRAKNMARDLLLLLRDCSSFGSR----SKQLKNELV 307 (339)
Q Consensus 244 ~~l~~~~~~~~-~~~~~----------~~g~i~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~~~~----~~~~~~~~~ 307 (339)
..+|..+++.+ ...+. +..-...++.-+. +.+...+..+...+..+...++.-.. +..+..-++
T Consensus 125 ~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL 204 (386)
T 2bnx_A 125 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 204 (386)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTH
T ss_pred HHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence 88988654222 22222 2234555666655 44556666666666666665542111 133455566
Q ss_pred HHHHHHHH
Q 048113 308 EQIMQEID 315 (339)
Q Consensus 308 ~~i~~~~~ 315 (339)
..++..+.
T Consensus 205 ~~il~~Lr 212 (386)
T 2bnx_A 205 HQVLQELR 212 (386)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 66665554
No 122
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=89.30 E-value=9.6 Score=38.96 Aligned_cols=304 Identities=10% Similarity=0.035 Sum_probs=146.8
Q ss_pred CCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC--CcchhhHHhhcCChHHHH
Q 048113 11 NGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACG--SERNKIRIVKSGIVPVLL 87 (339)
Q Consensus 11 s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~--~~~~~~~i~~~g~i~~Lv 87 (339)
+.++..+..+++++.....- .-..+.+.+.++.+..+|.+ ++++..|+.+|..+... +++.+..++..=.+...+
T Consensus 204 ~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~ 281 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFF 281 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHH
Confidence 46777777888888776654 34455567788888888865 89999999999888764 233343333320111112
Q ss_pred Hhhc--CCChhHHHHHHHHHHHHh------cCcc------chHHHH--hcchHHHHHHHhcCCCCCCCCccCCCCHHHHH
Q 048113 88 EVLQ--CQSTTLIELTVAAMLILS------SCLE------NKLEIA--SSGAIQRLVEILNGDLADDDNSYGRISVQAKI 151 (339)
Q Consensus 88 ~lL~--~~~~~~~~~a~~~L~nLs------~~~~------~~~~i~--~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~ 151 (339)
..+. ..+.+..+.-+..+..+. ...+ .+.... -.+.++.++..+.. ++.++..
T Consensus 282 ~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~-----------~~deVs~ 350 (980)
T 3ibv_A 282 SKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSD-----------DYDETST 350 (980)
T ss_dssp CC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTC-----------SSHHHHH
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCC-----------CchhHHH
Confidence 2122 345555443333332221 1111 011111 13567788888877 5667766
Q ss_pred HHHHHHHhhcCC----CC---ChHHHHhc--CcHHHHHHHhhcccc----C----ch-----HHHHHHHHHHHhhcC-CH
Q 048113 152 DAIATLHNLSTC----HQ---LISPIVSS--GVTYCLLQLIHSSEK----S----SG-----LTEKAIALLENIVSS-SE 208 (339)
Q Consensus 152 ~a~~~L~nLs~~----~~---~~~~i~~~--g~i~~Lv~ll~~~~~----~----~~-----~~~~a~~~L~n~l~~-~~ 208 (339)
.++..+..+... +. ........ ..++.+++-++.+++ + ++ -.++.++++...++. .+
T Consensus 351 ~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~ 430 (980)
T 3ibv_A 351 AVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDS 430 (980)
T ss_dssp TTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 666665544321 11 11111110 133333334433211 0 00 122233333312211 11
Q ss_pred hhhHHHHhhCCcHHHHH-HHhhc---CChHHHHHHHHHHHHhhccCchhHHHHHHhcC----ChHHHHHhhh-----cCC
Q 048113 209 DALQEIAATCGAIRALV-ETIEE---GSPQCKEHAVAILLLICKSCRDKYRSSILKEG----VMPGLLQLSV-----DGT 275 (339)
Q Consensus 209 ~~~~~i~~~~g~i~~Lv-~lL~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g----~i~~L~~ll~-----~~~ 275 (339)
+..-... ...+..++ +.+.. .+=...|.++.+|..++...........-+.. .++.|..++. ...
T Consensus 431 ~~~l~~~--~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~h 508 (980)
T 3ibv_A 431 SLFSSYM--YSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPH 508 (980)
T ss_dssp HHHHHHH--HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCC
T ss_pred HHHHHHH--HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCC
Confidence 1111100 01222222 22321 12345688888888887653321111000112 3344555544 567
Q ss_pred HHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH----h--cCcccchHHHHHHHHHHHHh
Q 048113 276 WRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID----A--EGDTVAGTTLRLVEEMIAKL 336 (339)
Q Consensus 276 ~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~----~--~~~~~~~~a~~~l~~~v~~~ 336 (339)
+.++..+.+++...++.=. .. ...++.++..+. + ...+++..|..++..+++..
T Consensus 509 p~V~~~~~~~l~rys~~~~---~~----~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~ 568 (980)
T 3ibv_A 509 PLVQLLYMEILVRYASFFD---YE----SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI 568 (980)
T ss_dssp HHHHHHHHHHHHHTGGGGG---TC----CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh---cC----chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh
Confidence 8899999999977765322 11 133444444442 1 12567888888888888754
No 123
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=89.05 E-value=1.1 Score=34.26 Aligned_cols=73 Identities=11% Similarity=0.253 Sum_probs=59.8
Q ss_pred CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113 219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 291 (339)
.++..|.+-|.++++.++..|+..|-.+..+.+......+.....+..|++++...++.++.+...++...+.
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3566777778888999999999998888887777677666667788888888888899999999999987764
No 124
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=88.22 E-value=7.5 Score=40.11 Aligned_cols=157 Identities=13% Similarity=0.071 Sum_probs=97.0
Q ss_pred CCHHHHHHHHHHHHHHHHH-HHH-HHHhcCChHHHHHHh----ccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHH
Q 048113 12 GERETQIQAANELGKLSRR-QKH-KLVERGIIAPLISML----CSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPV 85 (339)
Q Consensus 12 ~~~~~~~~a~~~L~~l~~~-~~~-~i~~~g~i~~Lv~lL----~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~ 85 (339)
+++..+..+.-+++.+... +.. .......++.+.+++ +..+.+.+..++++|+|+... ..++.
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-----------~~l~~ 475 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-----------NSIKK 475 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-----------GGHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-----------hHHHH
Confidence 3555666677777777655 211 111223456665544 556788889999999999882 25677
Q ss_pred HHHhhcC-------CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113 86 LLEVLQC-------QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH 158 (339)
Q Consensus 86 Lv~lL~~-------~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~ 158 (339)
|.+++.. ....++..|+++|.+++...+.+ +-+.+.++..+.. .++++|..|+..|.
T Consensus 476 l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~-------v~~il~~i~~n~~---------e~~EvRiaA~~~Lm 539 (1056)
T 1lsh_A 476 IQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVA---------IKSELRIRSCIVFF 539 (1056)
T ss_dssp HHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTT---------SCHHHHHHHHHHHH
T ss_pred HHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH-------HHHHHHHHhcCCC---------CChHHHHHHHHHHH
Confidence 7777642 13467888999988887543211 3566788886643 78999999998886
Q ss_pred hhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcC
Q 048113 159 NLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSS 206 (339)
Q Consensus 159 nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~ 206 (339)
.- +|. ...+..+...+... ++..+..-....|. .++.
T Consensus 540 ~t--~P~-------~~~l~~ia~~l~~E-~~~QV~sfv~S~l~-sla~ 576 (1056)
T 1lsh_A 540 ES--KPS-------VALVSMVAVRLRRE-PNLQVASFVYSQMR-SLSR 576 (1056)
T ss_dssp HT--CCC-------HHHHHHHHHHHTTC-SCHHHHHHHHHHHH-HHTT
T ss_pred HH--CcC-------HHHHHHHHHHHhhC-chHHHHHHHHHHHH-HHHh
Confidence 53 232 12345556666542 34555555556666 3443
No 125
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=87.04 E-value=1.9 Score=33.78 Aligned_cols=73 Identities=8% Similarity=0.213 Sum_probs=59.6
Q ss_pred CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc-CCHHHHHHHHHHHHHHhc
Q 048113 219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD-GTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~A~~~L~~l~~ 291 (339)
.++..|.+-|+++++.++..|+..|-.+..+.+..+...+.....+..|++++.. .++.++.+...++..-+.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 3566777788889999999999999888887777677777777888889888875 578999999998877765
No 126
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=87.02 E-value=14 Score=31.92 Aligned_cols=138 Identities=9% Similarity=0.008 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHh-hCCcHHHH
Q 048113 146 SVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAA-TCGAIRAL 224 (339)
Q Consensus 146 ~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~-~~g~i~~L 224 (339)
+......|+..|-.+|.+-+.-..|.+.. .+.|-.++.....+..+++.|.++++.-|..+|+....+.+ ...++..+
T Consensus 41 D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l 119 (315)
T 3qml_C 41 DIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI 119 (315)
T ss_dssp HHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence 45567789999999988776666666532 23333333221134678999999999666677777766654 24566666
Q ss_pred HHHhhc-------CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcC--CHHHHHHHHHHHHHHh
Q 048113 225 VETIEE-------GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDG--TWRAKNMARDLLLLLR 290 (339)
Q Consensus 225 v~lL~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~A~~~L~~l~ 290 (339)
..-|.. .....+..-+++|-.|...+ ... ...++..|.++.... ++.+|.++..++..+-
T Consensus 120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~-~~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTS-EDL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS-TTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh-Hhh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 554433 23455666788888888764 212 245678888887777 9999999999886665
No 127
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=86.89 E-value=1.7 Score=33.50 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=61.3
Q ss_pred CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc------CCHHHHHHHHHHHHHHhc
Q 048113 219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD------GTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~------~~~~~~~~A~~~L~~l~~ 291 (339)
.++..|.+-|+++++.++..|+..|-.+..+.+..+...+.....+..|++++.. .++.++.+...++..-+.
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4567788888899999999999999998888777787778788899999998864 478899999999988775
No 128
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=86.62 E-value=2.1 Score=33.08 Aligned_cols=73 Identities=21% Similarity=0.210 Sum_probs=61.0
Q ss_pred CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhh------cCCHHHHHHHHHHHHHHhc
Q 048113 219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSV------DGTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~------~~~~~~~~~A~~~L~~l~~ 291 (339)
.++..|.+-++++++.++..|+..|-.+..+.+..+...+....++..|++++. ..++.++.+...++..-+.
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 356777788888999999999999999888887777777777888999999985 3578899999999988775
No 129
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=86.18 E-value=5.5 Score=33.16 Aligned_cols=137 Identities=12% Similarity=0.107 Sum_probs=83.4
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH-HhccCCHHHHHHHHHHHHHhcc-CCcchhhHHhhcCChHH
Q 048113 8 NLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLIS-MLCSQDYEAIEAALLSLLSLAC-GSERNKIRIVKSGIVPV 85 (339)
Q Consensus 8 ~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~A~~~L~~Ls~-~~~~~~~~i~~~g~i~~ 85 (339)
+..+...++|..|+..|..+ . .....++.+.. +-.+++-.+++.++.++..++. ..++. .++.
T Consensus 79 L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--------~l~~ 143 (240)
T 3l9t_A 79 AYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--------ALPI 143 (240)
T ss_dssp HHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--------THHH
T ss_pred HHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--------HHHH
Confidence 33456667788888766555 1 11224444444 3345677899999999988875 23331 5677
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-C
Q 048113 86 LLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-H 164 (339)
Q Consensus 86 Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~ 164 (339)
+...+.++++.+|..|...+.--+..+..+ .+...+-+++.-+..+ .+.-++....+.|..+++. |
T Consensus 144 ~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k---~dp~~ll~iL~~L~~D----------~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 144 IDEWLKSSNLHTRRAATEGLRIWTNRPYFK---ENPNEAIRRIADLKED----------VSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp HHHHHHCSSHHHHHHHHHHTCSGGGSTTTT---TCHHHHHHHHHTTTTC----------SCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCCCHHHHHHHHHhhHHHhccchhh---cCHHHHHHHHHHhcCC----------hHHHHHHHHHHHHHHHhhhCH
Confidence 888888999999998887764322111100 1122223333333332 7888999999999999984 5
Q ss_pred CChHHHHh
Q 048113 165 QLISPIVS 172 (339)
Q Consensus 165 ~~~~~i~~ 172 (339)
+-...+++
T Consensus 211 d~V~~~~~ 218 (240)
T 3l9t_A 211 DLVKIELK 218 (240)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54444444
No 130
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=86.01 E-value=6.2 Score=40.74 Aligned_cols=127 Identities=14% Similarity=0.157 Sum_probs=88.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhcc-------CCHHHHHHHHHHHHHhccCCcchhhH
Q 048113 4 MLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCS-------QDYEAIEAALLSLLSLACGSERNKIR 76 (339)
Q Consensus 4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~-------~~~~~~~~A~~~L~~Ls~~~~~~~~~ 76 (339)
.|.+.+.+++.+.+..++++|+|+-. ...++.|..++.. ....++..|+++|+.++...|..
T Consensus 444 ~l~~~~~~~~~~~~~~~LkaLGN~g~--------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--- 512 (1056)
T 1lsh_A 444 LLSQSSDRAKEEEIVLALKALGNAGQ--------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--- 512 (1056)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTC--------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH---
T ss_pred HHHHHHhcCChHHHHHHHHHhhccCC--------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH---
Confidence 34555567788888889999988763 3456777777642 24578889999999999743222
Q ss_pred HhhcCChHHHHHhhc--CCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHH
Q 048113 77 IVKSGIVPVLLEVLQ--CQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAI 154 (339)
Q Consensus 77 i~~~g~i~~Lv~lL~--~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~ 154 (339)
+-+.+.++.. ..++++|..|+..|.. .+++ ...+..+...+..+ .+..+.....
T Consensus 513 -----v~~il~~i~~n~~e~~EvRiaA~~~Lm~--t~P~-------~~~l~~ia~~l~~E----------~~~QV~sfv~ 568 (1056)
T 1lsh_A 513 -----VQEIVLPIFLNVAIKSELRIRSCIVFFE--SKPS-------VALVSMVAVRLRRE----------PNLQVASFVY 568 (1056)
T ss_dssp -----HHHHHHHHHHCTTSCHHHHHHHHHHHHH--TCCC-------HHHHHHHHHHHTTC----------SCHHHHHHHH
T ss_pred -----HHHHHHHHhcCCCCChHHHHHHHHHHHH--HCcC-------HHHHHHHHHHHhhC----------chHHHHHHHH
Confidence 2245777774 3478899888777643 2222 12477888888775 6889999999
Q ss_pred HHHHhhcCCCC
Q 048113 155 ATLHNLSTCHQ 165 (339)
Q Consensus 155 ~~L~nLs~~~~ 165 (339)
..|.+++....
T Consensus 569 S~l~sla~s~~ 579 (1056)
T 1lsh_A 569 SQMRSLSRSSN 579 (1056)
T ss_dssp HHHHHHTTCCS
T ss_pred HHHHHHHhcCC
Confidence 99999987543
No 131
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=85.57 E-value=16 Score=38.17 Aligned_cols=211 Identities=11% Similarity=0.052 Sum_probs=117.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHh--ccCCHHHHHHHHHHHHHhccC-----CcchhhHHhhcCChH
Q 048113 12 GERETQIQAANELGKLSRRQKHKLVERGIIAPLISML--CSQDYEAIEAALLSLLSLACG-----SERNKIRIVKSGIVP 84 (339)
Q Consensus 12 ~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL--~~~~~~~~~~A~~~L~~Ls~~-----~~~~~~~i~~~g~i~ 84 (339)
.+.+.|..|-..|..+-. ..+.+..+...| .+.++.+|.-|+..|.+.... +++.+..+ +...+.
T Consensus 25 ~~~~~r~~Ae~~L~~~~~-------~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r~~ll~ 96 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKE-------KCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-KNSVME 96 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHH-------HCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-HHHHHH
T ss_pred CChHHHHHHHHHHHHHHh-------CchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-HHHHHH
Confidence 367778888888877643 223555555544 345889999999999987642 22333333 223333
Q ss_pred HHHHhhcC---CChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhh
Q 048113 85 VLLEVLQC---QSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNL 160 (339)
Q Consensus 85 ~Lv~lL~~---~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nL 160 (339)
.+...-.. .++.++...+.++..++..+ +.. =.+.++.|++++++ ++..+..++.+|..|
T Consensus 97 ~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~----Wp~ll~~L~~~~~~------------~~~~~e~~L~iL~~L 160 (1204)
T 3a6p_A 97 LIANGTLNILEEENHIKDALSRIVVEMIKREWPQH----WPDMLIELDTLSKQ------------GETQTELVMFILLRL 160 (1204)
T ss_dssp HHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT----CTTHHHHHHHHHHT------------CHHHHHHHHHHHHHH
T ss_pred HHHhhccccccccHHHHHHHHHHHHHHHHHhCccc----chHHHHHHHHHhcC------------CHHHHHHHHHHHHHH
Confidence 33332111 34667888888888877532 211 14578888888866 455677788888887
Q ss_pred cCC---CCC----hH-----HHHhc--CcHHHHHHHhhcc-----------------ccCchHHHHHHHHHHHhhcCCHh
Q 048113 161 STC---HQL----IS-----PIVSS--GVTYCLLQLIHSS-----------------EKSSGLTEKAIALLENIVSSSED 209 (339)
Q Consensus 161 s~~---~~~----~~-----~i~~~--g~i~~Lv~ll~~~-----------------~~~~~~~~~a~~~L~n~l~~~~~ 209 (339)
+.. .+. +. .+.+. .+++.+..++.+. ..+..+...++.++.+.+...+.
T Consensus 161 ~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~ 240 (1204)
T 3a6p_A 161 AEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM 240 (1204)
T ss_dssp HHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH
T ss_pred HHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH
Confidence 532 111 11 12222 2233333444321 01234666777777733222222
Q ss_pred hhHHHHhhC-CcHHHHHHHhhcCChHHHHHHHHHHHHhhccC
Q 048113 210 ALQEIAATC-GAIRALVETIEEGSPQCKEHAVAILLLICKSC 250 (339)
Q Consensus 210 ~~~~i~~~~-g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 250 (339)
..+.+.. ..++.+..++. ++.++..|+.+|..+....
T Consensus 241 --~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 241 --SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp --HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred --HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 1222211 25555555544 4678889999999888643
No 132
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=85.17 E-value=2.1 Score=33.86 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=60.3
Q ss_pred cHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc------CCHHHHHHHHHHHHHHhc
Q 048113 220 AIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD------GTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 220 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~------~~~~~~~~A~~~L~~l~~ 291 (339)
++..|.+-|+++++.++..|+..|-.+..+++..+...+.....+..|++++.. .++.++.+++.++..-+.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 567788888899999999999999888888777677777778899999999862 468899999999988775
No 133
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=84.54 E-value=40 Score=34.78 Aligned_cols=219 Identities=9% Similarity=0.036 Sum_probs=126.1
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcC-CChhHHHHHHHHHHHHhcC-----ccc
Q 048113 41 IAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQC-QSTTLIELTVAAMLILSSC-----LEN 114 (339)
Q Consensus 41 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~-----~~~ 114 (339)
+..++..+-+++++.|..|-..|..+-. +++.. +.+..+|.+ .++.++..|+.+|.+.... ++.
T Consensus 30 Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp~aw---------~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e 99 (1073)
T 3gjx_A 30 LDNVVNCLYHGEGAQQRMAQEVLTHLKE-HPDAW---------TRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRN 99 (1073)
T ss_dssp HHHHHHTTTCSSHHHHHHHHHHHHTSSC-CSCHH---------HHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHc-CchHH---------HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHH
Confidence 4445555555677788888888887777 45443 333344443 4788999999999887642 111
Q ss_pred hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC--CCCChHHHHhcCcHHHHHHHhhccccCchH
Q 048113 115 KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST--CHQLISPIVSSGVTYCLLQLIHSSEKSSGL 192 (339)
Q Consensus 115 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 192 (339)
...-.+...+..+.+.-.++. ....++.++...+.++..+.. .++.= .+.++.++..+..+ ...
T Consensus 100 ~~~~LR~~Ll~~l~~~~~~~~------~~e~~~~vinKLa~~La~I~k~~~P~~W-----p~fi~dLv~~~~~~---~~~ 165 (1073)
T 3gjx_A 100 QCEGIKKYVVGLIIKTSSDPT------CVEKEKVYIGKLNMILVQILKQEWPKHW-----PTFISDIVGASRTS---ESL 165 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHTCGG------GGTSCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHHHC---HHH
T ss_pred HHHHHHHHHHHHHHHHccCcc------ccccchHHHHHHHHHHHHHHHHhChhhc-----cHHHHHHHHHhCCC---HHH
Confidence 122223344555554432210 000256677777777777764 23321 24667777777642 344
Q ss_pred HHHHHHHHHHhhcCC----H-----hh-----hHHHHhhCCcHHHHHHH----hhc-CChHHHHHHHHHHHHhhccCchh
Q 048113 193 TEKAIALLENIVSSS----E-----DA-----LQEIAATCGAIRALVET----IEE-GSPQCKEHAVAILLLICKSCRDK 253 (339)
Q Consensus 193 ~~~a~~~L~n~l~~~----~-----~~-----~~~i~~~~g~i~~Lv~l----L~~-~~~~~~~~a~~~L~~l~~~~~~~ 253 (339)
....+.+|. .++.. . .. +..+.. -++.++.+ |+. .++.+...++.++..+...-+.
T Consensus 166 ~~~~L~IL~-~L~EEV~d~~~~~l~~~r~~~lk~~L~~---~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i- 240 (1073)
T 3gjx_A 166 CQNNMVILK-LLSEEVFDFSSGQITQVKAKHLKDSMCN---EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL- 240 (1073)
T ss_dssp HHHHHHHHH-HHHHHHTTSHHHHBCHHHHHHHHHHHHH---TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-
T ss_pred HHHHHHHHH-HHHHHHHhcccccccHHHHHHHHHHHHH---HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH-
Confidence 555666665 44322 0 01 122222 13444443 433 4677777788888888876543
Q ss_pred HHHHHHhcCChHHHH-HhhhcCCHHHHHHHHHHHHHHhcc
Q 048113 254 YRSSILKEGVMPGLL-QLSVDGTWRAKNMARDLLLLLRDC 292 (339)
Q Consensus 254 ~~~~~~~~g~i~~L~-~ll~~~~~~~~~~A~~~L~~l~~~ 292 (339)
..+.+.+.++.|+ ..+ .++..+..|+.+|..+...
T Consensus 241 --~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 241 --GYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp --HHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred --HHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 4577788888774 555 4788999999999887653
No 134
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=81.65 E-value=22 Score=29.60 Aligned_cols=141 Identities=13% Similarity=0.028 Sum_probs=89.8
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-
Q 048113 84 PVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST- 162 (339)
Q Consensus 84 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~- 162 (339)
+..-.+.+++..++|..|+..|..+ . . ....++.+...+..+ .+-.+++.+..++..++.
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~--~------~~~~L~~ir~~va~D----------~~WrVre~lA~a~~~~~~~ 134 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--K------DKEILIFMRDEVSKD----------NNWRVQEVLAKAFDEFCKK 134 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T--T------SHHHHHHHHHTGGGC----------SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c--C------cHHHHHHHHHHhCCC----------CCccHHHHHHHHHHHHHHh
Confidence 3444555667788999999988776 2 1 122566666634332 789999999999999874
Q ss_pred -CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHH
Q 048113 163 -CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVA 241 (339)
Q Consensus 163 -~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~ 241 (339)
.++. .++.+.....+. +..+++.|...+. --+..+..+ .+..-.++.|-.+..+++..++.....
T Consensus 135 ~~pe~--------~l~~~~~W~~d~--n~~VRR~Ase~~r-pW~~~~~~k---~dp~~ll~iL~~L~~D~s~yVrKSVan 200 (240)
T 3l9t_A 135 IEYKK--------ALPIIDEWLKSS--NLHTRRAATEGLR-IWTNRPYFK---ENPNEAIRRIADLKEDVSEYVRKSVGN 200 (240)
T ss_dssp HCTTT--------THHHHHHHHHCS--SHHHHHHHHHHTC-SGGGSTTTT---TCHHHHHHHHHTTTTCSCHHHHHHHHH
T ss_pred cCHHH--------HHHHHHHHhcCC--CHHHHHHHHHhhH-HHhccchhh---cCHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 4441 566777777774 5777777766543 211111100 010113444444556678999999999
Q ss_pred HHHHhhccCchhHHHH
Q 048113 242 ILLLICKSCRDKYRSS 257 (339)
Q Consensus 242 ~L~~l~~~~~~~~~~~ 257 (339)
+|..++..+|+-.+..
T Consensus 201 ~LrD~SK~~Pd~V~~~ 216 (240)
T 3l9t_A 201 ALRDISKKFPDLVKIE 216 (240)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHhhhCHHHHHHH
Confidence 9999999876644443
No 135
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=79.15 E-value=5.1 Score=30.43 Aligned_cols=65 Identities=12% Similarity=0.119 Sum_probs=50.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 048113 4 MLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLAC 68 (339)
Q Consensus 4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~ 68 (339)
.+.+.|.++++.++..|+..|--+.++ ....+.....+..|+.+++..++.++...+..+...+.
T Consensus 46 ai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 46 SIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 467788999999999999988888887 34445556667777777777788999988888876664
No 136
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=77.48 E-value=66 Score=32.78 Aligned_cols=211 Identities=10% Similarity=0.031 Sum_probs=123.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccC---CHHHHHHHHHHHHHhccC-Ccc----hhhHHhhcCCh
Q 048113 12 GERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQ---DYEAIEAALLSLLSLACG-SER----NKIRIVKSGIV 83 (339)
Q Consensus 12 ~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~A~~~L~~Ls~~-~~~----~~~~i~~~g~i 83 (339)
.+++.|..|-..|..+-. ..+++.....+|.++ ++++|.-|+.+|.+.-.. +++ .+. .++...+
T Consensus 20 sd~~~r~~A~~~L~~~q~-------sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~-~lr~~ll 91 (980)
T 3ibv_A 20 VGPIIKQQATDFIGSLRS-------SSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQ-MIRDSVW 91 (980)
T ss_dssp SCHHHHHHHHHHHHHHHH-------STTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHH-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHc-------ChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHH-HHHHHHH
Confidence 378889998888877654 355677777777654 689999999998866542 222 232 2233344
Q ss_pred HHHHHhhc-CCChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCH-HHHHHHHHHHHhh
Q 048113 84 PVLLEVLQ-CQSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISV-QAKIDAIATLHNL 160 (339)
Q Consensus 84 ~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~-~~~~~a~~~L~nL 160 (339)
..+...-. ..++-++...+.++..+...+ +.. =.+.++.++.++.. ++. ......+++|..+
T Consensus 92 ~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~----Wp~~i~~l~~~~~~-----------~~~~~~~~~~LriL~~i 156 (980)
T 3ibv_A 92 SYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSN----WNDFFASLQGVIAA-----------SSQSEFSNFYLKVLLSI 156 (980)
T ss_dssp HHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTT----CTTHHHHHHHHHHH-----------HCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCccc----CchHHHHHHHHhcC-----------CChhHHHHHHHHHHHHh
Confidence 44443111 124557788888887776422 111 13467888888766 332 3444555555533
Q ss_pred cC---CCC---C----------hHHHHhcC---cHHHHHHHhhcc--ccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCC
Q 048113 161 ST---CHQ---L----------ISPIVSSG---VTYCLLQLIHSS--EKSSGLTEKAIALLENIVSSSEDALQEIAATCG 219 (339)
Q Consensus 161 s~---~~~---~----------~~~i~~~g---~i~~Lv~ll~~~--~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g 219 (339)
+. +.. . ++.+.+.. +++....+|... ..++.+...++.++...+..-+. ..+.+ .+
T Consensus 157 ~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~--~~i~~-~~ 233 (980)
T 3ibv_A 157 GDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI--NLIVN-EP 233 (980)
T ss_dssp HHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH--HHHHC-HH
T ss_pred HHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH--Hhhhc-ch
Confidence 32 100 0 12222211 133344444331 12467888999999954443222 34444 57
Q ss_pred cHHHHHHHhhcCChHHHHHHHHHHHHhhccC
Q 048113 220 AIRALVETIEEGSPQCKEHAVAILLLICKSC 250 (339)
Q Consensus 220 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 250 (339)
.++.+.+++.+ +..+..|+.+|..+....
T Consensus 234 ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~ 262 (980)
T 3ibv_A 234 CMNLLYSFLQI--EELRCAACETMTEIVNKK 262 (980)
T ss_dssp HHHHHHHHTTS--HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCC--hHHHHHHHHHHHHHHHcC
Confidence 88888888865 789999999999887654
No 137
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=76.72 E-value=8.1 Score=30.16 Aligned_cols=65 Identities=11% Similarity=0.094 Sum_probs=50.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhcc
Q 048113 4 MLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCS-QDYEAIEAALLSLLSLAC 68 (339)
Q Consensus 4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~ 68 (339)
.|.++|.++++.++..|+..|--+.++ .+..+.....+..|+.+++. .++.++...+..+..-+.
T Consensus 56 al~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 56 AIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 567788899999999999999888887 44455556677777777765 577888888887766554
No 138
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=76.08 E-value=73 Score=32.56 Aligned_cols=181 Identities=15% Similarity=0.147 Sum_probs=104.0
Q ss_pred HHHHc-CCCHHHHHHHHHHHHHHHHH-------HHHHHHhcCChHHHHHHhccC-----CHHHHHHHHHHHHHhccCC-c
Q 048113 6 MDNLL-NGERETQIQAANELGKLSRR-------QKHKLVERGIIAPLISMLCSQ-----DYEAIEAALLSLLSLACGS-E 71 (339)
Q Consensus 6 v~~L~-s~~~~~~~~a~~~L~~l~~~-------~~~~i~~~g~i~~Lv~lL~~~-----~~~~~~~A~~~L~~Ls~~~-~ 71 (339)
..+|. +.++.+|.-|+..|++.... ..+..+...++..+...-.++ ++.++...+.++..++... +
T Consensus 54 ~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p 133 (1049)
T 3m1i_C 54 DQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP 133 (1049)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc
Confidence 34443 56778888888888887654 112222223333333321111 3567778888888888741 2
Q ss_pred chhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcC-----cc----ch-----HHHHh--cchHHHHHHHhcCCC
Q 048113 72 RNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSC-----LE----NK-----LEIAS--SGAIQRLVEILNGDL 135 (339)
Q Consensus 72 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-----~~----~~-----~~i~~--~g~i~~Lv~ll~~~~ 135 (339)
..+ .+.++-|+..++ .++..++.++.+|..++.. .+ .+ ..+.. ....+.+...+...
T Consensus 134 ~~W-----p~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~- 206 (1049)
T 3m1i_C 134 QNW-----PEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQG- 206 (1049)
T ss_dssp TTC-----TTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccc-----hHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 222 256788888886 5556677777777777631 00 01 12222 12334445555542
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcC
Q 048113 136 ADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSS 206 (339)
Q Consensus 136 ~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~ 206 (339)
.+..++..++.++.+....-+ ...+.+...++.+.+.+.. +++++..|+.+|...+..
T Consensus 207 ---------~~~~~~~~aL~~l~~~l~wi~-~~~~~~~~ll~~l~~~~l~---~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 207 ---------SSSSLIVATLESLLRYLHWIP-YRYIYETNILELLSTKFMT---SPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp ---------CCHHHHHHHHHHHHHHTTTSC-THHHHSSSHHHHHHTHHHH---SHHHHHHHHHHHHHHHHC
T ss_pred ---------CCHHHHHHHHHHHHHHHhhCC-HHHHhhhhHHHHHHHHhCC---CHhHHHHHHHHHHHHHhC
Confidence 567889999999988755322 2334556667766633322 367888899888854443
No 139
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=75.78 E-value=8.9 Score=29.37 Aligned_cols=65 Identities=12% Similarity=0.138 Sum_probs=53.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhcc------CCHHHHHHHHHHHHHhcc
Q 048113 4 MLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCS------QDYEAIEAALLSLLSLAC 68 (339)
Q Consensus 4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~A~~~L~~Ls~ 68 (339)
.|...|.++++.++..|+..|-.+.++ .+..+.....+..|+.+++. .++.++...+..+..-+.
T Consensus 42 ai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 42 LLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999887 55566677788888888864 378899998888877665
No 140
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=74.97 E-value=10 Score=29.12 Aligned_cols=65 Identities=15% Similarity=0.139 Sum_probs=53.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhcc------CCHHHHHHHHHHHHHhcc
Q 048113 4 MLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCS------QDYEAIEAALLSLLSLAC 68 (339)
Q Consensus 4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~A~~~L~~Ls~ 68 (339)
.|...|.+.++.++..|+..|-.+.++ .+..+.....+..|+++++. .++.++...+..+..-+.
T Consensus 52 al~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 52 LLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999887 45566667788888888863 478899999888877765
No 141
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=74.55 E-value=5.8 Score=32.84 Aligned_cols=72 Identities=14% Similarity=0.227 Sum_probs=58.0
Q ss_pred cHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc-CCHHHHHHHHHHHHHHhc
Q 048113 220 AIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD-GTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 220 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~A~~~L~~l~~ 291 (339)
++..|.+-|+++++.++..|+..|-.+..+.+......+.....+..|.+++.. .++.++++.+.++...+.
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 566777778889999999999999888877666666777777788888888764 567899999999988775
No 142
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=72.91 E-value=12 Score=29.52 Aligned_cols=66 Identities=12% Similarity=0.119 Sum_probs=52.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhcc------CCHHHHHHHHHHHHHhccC
Q 048113 4 MLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCS------QDYEAIEAALLSLLSLACG 69 (339)
Q Consensus 4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~A~~~L~~Ls~~ 69 (339)
.|...|.++++.++..|+..|-.+.++ .+..+.+...+..|+.+++. .++.++..++..+..-+..
T Consensus 54 al~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 54 LLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999988887 45556667788888888862 3678999998888776653
No 143
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=71.42 E-value=8.5 Score=31.61 Aligned_cols=72 Identities=11% Similarity=0.130 Sum_probs=57.7
Q ss_pred cHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc-CCHHHHHHHHHHHHHHhc
Q 048113 220 AIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD-GTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 220 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~A~~~L~~l~~ 291 (339)
++..|.+-|+++++.++..|+..|-.+..+.+......+.....+..|++++.+ .++.++++++.++..-+.
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 456677777889999999999999888887766677777777788888888764 468899999998877764
No 144
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=71.30 E-value=13 Score=31.25 Aligned_cols=137 Identities=12% Similarity=0.056 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhccCCcchhhHHhhcCChHHHHH-hhcCCChhHHHHHHHHHHHHhcCcc-chHHHHhcchHHHHHHHhcC
Q 048113 56 IEAALLSLLSLACGSERNKIRIVKSGIVPVLLE-VLQCQSTTLIELTVAAMLILSSCLE-NKLEIASSGAIQRLVEILNG 133 (339)
Q Consensus 56 ~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~ll~~ 133 (339)
+-.++..++-+..+ +... +.+..++. .+.+.++..+-.++++++|+-.++. .+..+.+....+.+++.+..
T Consensus 71 ~fP~lDllRl~~~~-~~~~------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~ 143 (253)
T 3gae_A 71 KTPAYDIVRLIVKK-LPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 143 (253)
T ss_dssp CHHHHHHHHHHGGG-CSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHHcC-CchH------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHH
Confidence 55577777777774 4332 23333333 3344567789999999999998887 67766654445556655432
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCChHHHHhcCcHHHHHHHhhc----c---ccCchHHHHHHHHHHHhhc
Q 048113 134 DLADDDNSYGRISVQAKIDAIATLHNLSTC-HQLISPIVSSGVTYCLLQLIHS----S---EKSSGLTEKAIALLENIVS 205 (339)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~----~---~~~~~~~~~a~~~L~n~l~ 205 (339)
.-.+ ...+.+..++..++..+.|++.. ...+. +......++..+.. . ..+++....++.+|++++.
T Consensus 144 ~~~~---~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 144 EFSQ---ASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp CCTT---CCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred Hhhh---cccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 1000 00012567888899999999752 22111 12334455555542 1 1246777888888885443
No 145
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=70.41 E-value=12 Score=29.02 Aligned_cols=72 Identities=15% Similarity=0.203 Sum_probs=56.0
Q ss_pred cHHHHHHHhh-cCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHH-HHHhhhc---CCHHHHHHHHHHHHHHhc
Q 048113 220 AIRALVETIE-EGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPG-LLQLSVD---GTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 220 ~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~-L~~ll~~---~~~~~~~~A~~~L~~l~~ 291 (339)
++..|.+-|+ ++++.++..|+..|-.+..+++......+.....+.. |++++.. ....+++++..++..-+.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 5667777776 4788999999999988888877777777777788887 7888742 346889999998877665
No 146
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=66.56 E-value=13 Score=30.66 Aligned_cols=65 Identities=8% Similarity=0.127 Sum_probs=50.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhcc
Q 048113 4 MLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCS-QDYEAIEAALLSLLSLAC 68 (339)
Q Consensus 4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~ 68 (339)
.|.+.|.+.++.++..|+..|--+.++ ....+.....+..|..+++. .++.++...+..+...+.
T Consensus 49 al~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 49 SIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 577888999999999999999888887 44555566666777777754 467888888888877664
No 147
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=62.31 E-value=1.5e+02 Score=30.84 Aligned_cols=288 Identities=10% Similarity=0.072 Sum_probs=146.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHH-------HHHHHHhcCChHHHHHHhcc---CCHHHHHHHHHHHHHhccCC-cchhhHHh
Q 048113 10 LNGERETQIQAANELGKLSRR-------QKHKLVERGIIAPLISMLCS---QDYEAIEAALLSLLSLACGS-ERNKIRIV 78 (339)
Q Consensus 10 ~s~~~~~~~~a~~~L~~l~~~-------~~~~i~~~g~i~~Lv~lL~~---~~~~~~~~A~~~L~~Ls~~~-~~~~~~i~ 78 (339)
.+.++.+|.-|+..|++.... ..+..+...++..+...-.. ..+.++...+.++..+++.. ++.+
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W---- 132 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW---- 132 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC----
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc----
Confidence 356889999999999998754 22222333334433332111 35788888899999888842 2222
Q ss_pred hcCChHHHHHhhcCCChhHHHHHHHHHHHHhcC---cc----chH-----HHHhc--chHHHHHHHhcCC-------CCC
Q 048113 79 KSGIVPVLLEVLQCQSTTLIELTVAAMLILSSC---LE----NKL-----EIASS--GAIQRLVEILNGD-------LAD 137 (339)
Q Consensus 79 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~---~~----~~~-----~i~~~--g~i~~Lv~ll~~~-------~~~ 137 (339)
.+.++.|+.++++ ++..++.++.+|..|+.. .. .+. .+.+. ..++.+..++... +.+
T Consensus 133 -p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~ 210 (1204)
T 3a6p_A 133 -PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTD 210 (1204)
T ss_dssp -TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3567888888866 556677888888887632 11 111 11111 2233333444320 000
Q ss_pred CC-CccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcC--cHHHHHHHhhccccCchHHHHHHHHHHHhhcCC--HhhhH
Q 048113 138 DD-NSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSG--VTYCLLQLIHSSEKSSGLTEKAIALLENIVSSS--EDALQ 212 (339)
Q Consensus 138 ~~-~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g--~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~--~~~~~ 212 (339)
.. .+....+..+...++.++.+....-. ...+.+.. .++.+..++.+ ++++..|+.+|...+... ++.+.
T Consensus 211 ~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~-~~~i~~~~~~ll~~l~~~l~~----~~lr~~A~ecL~~i~s~~~~~~~~~ 285 (1204)
T 3a6p_A 211 TSQESKAQANCRVGVAALNTLAGYIDWVS-MSHITAENCKLLEILCLLLNE----QELQLGAAECLLIAVSRKGKLEDRK 285 (1204)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHTTTTTSC-HHHHHTTTSHHHHHHHHGGGC----TTTHHHHHHHHHHHHTCCSCHHHHG
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHhccC-HHHHHhccchHHHHHHHHcCC----HHHHHHHHHHHHHHHhCCCChhhHH
Confidence 00 00000233466667777776544222 12333332 56666665543 578889999999555443 34443
Q ss_pred HHHhhC--CcHHHHHHHhh--c------CChHHHHHHHHHHHHhhccCchhHHHHHHh----------cCChHHHHHhhh
Q 048113 213 EIAATC--GAIRALVETIE--E------GSPQCKEHAVAILLLICKSCRDKYRSSILK----------EGVMPGLLQLSV 272 (339)
Q Consensus 213 ~i~~~~--g~i~~Lv~lL~--~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~----------~g~i~~L~~ll~ 272 (339)
.+...- .++..++.... + .+....+..+..+..++.. ....+.+ .+.++.+.....
T Consensus 286 ~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~----l~~l~~~~~~~~~~~~l~~~l~~lL~~t~ 361 (1204)
T 3a6p_A 286 PLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQ----LCALLGADSDVETPSNFGKYLESFLAFTT 361 (1204)
T ss_dssp GGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHH----HHHHHHTCSSCCCCTTHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHH----HHHHHhccccccChhHHHHHHHHHHHHHh
Confidence 333211 12334555442 1 1133444455555555421 1111110 135677777777
Q ss_pred cCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHH
Q 048113 273 DGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEI 314 (339)
Q Consensus 273 ~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 314 (339)
+.+..+-..+...-..+.+.... .....-.+.+..++..+
T Consensus 362 ~~~~~vs~~~l~fW~~ll~~~~~--~~~~~~~~~l~~Ll~vl 401 (1204)
T 3a6p_A 362 HPSQFLRSSTQMTWGALFRHEIL--SRDPLLLAIIPKYLRAS 401 (1204)
T ss_dssp SSCHHHHHHHHHHHHHHHSCTTT--TTCHHHHHHHHHHHHHH
T ss_pred CccHHhHHHHHHHHHHHHhcccc--cccHHHHHHHHHHHHHH
Confidence 77777766666655534443211 11122345555555555
No 148
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=61.80 E-value=18 Score=29.59 Aligned_cols=65 Identities=9% Similarity=0.041 Sum_probs=49.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhcc
Q 048113 4 MLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCS-QDYEAIEAALLSLLSLAC 68 (339)
Q Consensus 4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~ 68 (339)
.|.+.|.++++.++..|+..|-.+..+ .+..+.+...+..|+.++++ .+++++..++..+..-+.
T Consensus 46 ~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 46 AIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 567888999999999999999998887 44455556677777777754 367888888777766554
No 149
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=60.97 E-value=20 Score=27.11 Aligned_cols=74 Identities=9% Similarity=0.177 Sum_probs=50.2
Q ss_pred cHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHh-cCChHHHHHhhhcCC--------HHHHHHHHHHHHHHh
Q 048113 220 AIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILK-EGVMPGLLQLSVDGT--------WRAKNMARDLLLLLR 290 (339)
Q Consensus 220 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~g~i~~L~~ll~~~~--------~~~~~~A~~~L~~l~ 290 (339)
..+-|.+-|.+.++.++..|+.+|..|+...++.++..+.. ...|..+...---.+ ..++.+|-.++..|.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 45667777788888999999999999998777766666655 223333332211111 457888888998887
Q ss_pred ccC
Q 048113 291 DCS 293 (339)
Q Consensus 291 ~~~ 293 (339)
+..
T Consensus 130 d~~ 132 (140)
T 1vdy_A 130 SEE 132 (140)
T ss_dssp CCS
T ss_pred CcC
Confidence 654
No 150
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=59.45 E-value=99 Score=27.68 Aligned_cols=180 Identities=12% Similarity=0.080 Sum_probs=104.1
Q ss_pred HHHHHHHcC----CCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHH
Q 048113 3 EMLMDNLLN----GERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRI 77 (339)
Q Consensus 3 ~~Lv~~L~s----~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i 77 (339)
+.++++|+. ++ +.+...+.-++++..+ ... .=...++.++.+-.+.+.++|.-.+..+...+....+..
T Consensus 25 ~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dps--Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~--- 98 (386)
T 3o2t_A 25 ERVVDLLNQAALITN-DSKITVLKQVQELIINKDPT--LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL--- 98 (386)
T ss_dssp HHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCGG--GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH---
T ss_pred HHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH---
Confidence 445666642 23 4566677777666543 221 235788889998888899999999888887776322221
Q ss_pred hhcCChHHHHHhhcCCChhHHHHHHHHHHHH---h-----cCccch----HHHHh-cchHHHHHHHhcCCCCCCCCccCC
Q 048113 78 VKSGIVPVLLEVLQCQSTTLIELTVAAMLIL---S-----SCLENK----LEIAS-SGAIQRLVEILNGDLADDDNSYGR 144 (339)
Q Consensus 78 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nL---s-----~~~~~~----~~i~~-~g~i~~Lv~ll~~~~~~~~~~~~~ 144 (339)
..+++.|..+|.++++.+...+..+..++ + .++... ..-.. ...-..++.++++
T Consensus 99 --~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds----------- 165 (386)
T 3o2t_A 99 --LKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDS----------- 165 (386)
T ss_dssp --HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGC-----------
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhcc-----------
Confidence 34567788888888887776665554333 2 122111 10000 1233455566666
Q ss_pred CCHHHHHHHHHHHHhhc--CCC---C------------------C-----hHHHH-hc-CcHHHHHHHhhccccCchHHH
Q 048113 145 ISVQAKIDAIATLHNLS--TCH---Q------------------L-----ISPIV-SS-GVTYCLLQLIHSSEKSSGLTE 194 (339)
Q Consensus 145 ~~~~~~~~a~~~L~nLs--~~~---~------------------~-----~~~i~-~~-g~i~~Lv~ll~~~~~~~~~~~ 194 (339)
.+..++..+++.+-.+. ..+ . + ...+- ++ +.++.|++.+.....+.....
T Consensus 166 ~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~ 245 (386)
T 3o2t_A 166 DNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLT 245 (386)
T ss_dssp SSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHH
Confidence 78888888888766642 111 0 1 12222 22 678888888876433344555
Q ss_pred HHHHHHH
Q 048113 195 KAIALLE 201 (339)
Q Consensus 195 ~a~~~L~ 201 (339)
.++..|+
T Consensus 246 a~lnsLa 252 (386)
T 3o2t_A 246 TALGSLA 252 (386)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5667777
No 151
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=57.28 E-value=11 Score=31.71 Aligned_cols=110 Identities=11% Similarity=0.068 Sum_probs=66.1
Q ss_pred ccCCHHHHHHHHHHHHHhccCCcc-hhhHHhhcCChHHHHHhhcC--------CChhHHHHHHHHHHHHhcCc-cchHHH
Q 048113 49 CSQDYEAIEAALLSLLSLACGSER-NKIRIVKSGIVPVLLEVLQC--------QSTTLIELTVAAMLILSSCL-ENKLEI 118 (339)
Q Consensus 49 ~~~~~~~~~~A~~~L~~Ls~~~~~-~~~~i~~~g~i~~Lv~lL~~--------~~~~~~~~a~~~L~nLs~~~-~~~~~i 118 (339)
++..+..+..++++++|+-. ++. .+..+........++..+.+ ++..++..++..+.|++... ..+.
T Consensus 100 ~~~~~~~~ml~lR~l~NlF~-~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~-- 176 (253)
T 3gae_A 100 GNKNITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-- 176 (253)
T ss_dssp TCSSHHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS--
T ss_pred CCCchhHHHHHHHHHHHccc-CCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc--
Confidence 34567899999999999999 466 67666554334455554422 24568888889999998521 1111
Q ss_pred HhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCC
Q 048113 119 ASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCH 164 (339)
Q Consensus 119 ~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~ 164 (339)
+......+++.+....+.. .....+.+....++-+|.+|...+
T Consensus 177 -~~e~~~~l~~~i~~~~~~~--e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 177 -DLELLPIVADAINTKYGPL--EEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp -CTTHHHHHHHHHHTTTTTS--HHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred -hHHHHHHHHHHHHHHhccc--ccccCCHHHHHHHHHHHHHHHhCc
Confidence 1234455666554200000 000036778888888888887633
No 152
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=54.10 E-value=14 Score=28.00 Aligned_cols=32 Identities=16% Similarity=-0.068 Sum_probs=27.6
Q ss_pred ChHHHHHhhhcCCHHHHHHHHHHHHHHhccCC
Q 048113 263 VMPGLLQLSVDGTWRAKNMARDLLLLLRDCSS 294 (339)
Q Consensus 263 ~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 294 (339)
+++.|.+-+.+.++.++.+|+.+|.+|...+.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs 81 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSG 81 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCC
Confidence 57788888999999999999999999987664
No 153
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=53.98 E-value=46 Score=26.69 Aligned_cols=113 Identities=13% Similarity=0.170 Sum_probs=70.0
Q ss_pred ChHHHHHHhcc------CCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCC---ChhHHHHHHHHHHHHhc
Q 048113 40 IIAPLISMLCS------QDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQ---STTLIELTVAAMLILSS 110 (339)
Q Consensus 40 ~i~~Lv~lL~~------~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~~L~nLs~ 110 (339)
.+|.++.+..+ .+.......++....|.. |+.-.-.---+-.+|.++.++-.. ...+|+.|+..|..++.
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~-N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~ 119 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIK-NKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYD 119 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-CTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 55555555443 255666677777888887 565443333345788888876432 23799999999999885
Q ss_pred CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113 111 CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST 162 (339)
Q Consensus 111 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~ 162 (339)
.-.....-.....+..+.+.+.++. .+.....-|+..|..+..
T Consensus 120 ~~~~~y~~L~~RI~~tl~k~l~dp~---------~~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 120 TYSRSYKTLAPRVLKTLKGVWMDPN---------RSEDSQYGALYCLSILSK 162 (196)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHTCTT---------SCHHHHHHHHHHHHHHCH
T ss_pred HhCccCchHHHHHHHHHHHHHcCCC---------CChHHHHHHHHHHHHhHH
Confidence 2211111113445777777776642 566677777777777643
No 154
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=52.88 E-value=25 Score=27.13 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=44.2
Q ss_pred ChHHHHHhhh-cCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHH-HHHHHHhcC---cccchHHHHHHHH
Q 048113 263 VMPGLLQLSV-DGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQ-IMQEIDAEG---DTVAGTTLRLVEE 331 (339)
Q Consensus 263 ~i~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~---~~~~~~a~~~l~~ 331 (339)
++..|.+.+. ..++.++..|+.+|..+.+++....+......+-+++ ++..+.-.+ ..++.++..++..
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~ 127 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQS 127 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Confidence 4566777776 5789999999999988887764433444455666666 455553222 3456666555543
No 155
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=52.59 E-value=1.3e+02 Score=26.93 Aligned_cols=112 Identities=14% Similarity=0.172 Sum_probs=73.6
Q ss_pred CCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHH--------
Q 048113 218 CGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLL-------- 289 (339)
Q Consensus 218 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l-------- 289 (339)
.++++.++.+-.+.+..++...+..|...|....+ .. ..+++.|..++++.++.+.+.+..+..++
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~e-l~-----~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i 135 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIE-LL-----LKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWM 135 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG-GH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999988888999999999999888765332 21 23678888899988999887777665554
Q ss_pred hccCCCcchhhhhhhHHHHHHHHHHH----hcCcccchHHHHHHHHHHHHh
Q 048113 290 RDCSSFGSRSKQLKNELVEQIMQEID----AEGDTVAGTTLRLVEEMIAKL 336 (339)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~a~~~l~~~v~~~ 336 (339)
+.++.. .......++.+..+-..+. .+.+.++-.|-++++.+|-..
T Consensus 136 ~~~~~~-~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~q 185 (386)
T 3o2t_A 136 VKSRVI-SELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTL 185 (386)
T ss_dssp HHC-CC-CHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHT
T ss_pred hcCCCc-chhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHh
Confidence 333321 0011233444444444443 334666777999999888544
No 156
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=46.51 E-value=33 Score=31.14 Aligned_cols=108 Identities=11% Similarity=0.058 Sum_probs=64.6
Q ss_pred cCCHHHHHHHHHHHHHhccCCcch-hhHHhhcCChHHHHHhhcC--------CChhHHHHHHHHHHHHhcCcc-chHHHH
Q 048113 50 SQDYEAIEAALLSLLSLACGSERN-KIRIVKSGIVPVLLEVLQC--------QSTTLIELTVAAMLILSSCLE-NKLEIA 119 (339)
Q Consensus 50 ~~~~~~~~~A~~~L~~Ls~~~~~~-~~~i~~~g~i~~Lv~lL~~--------~~~~~~~~a~~~L~nLs~~~~-~~~~i~ 119 (339)
+..+..+..++++++||-. ++.. +..+........++..+.. .+..++..++..++|++.... .+.
T Consensus 273 ~~~~an~MltlR~laNlF~-~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~--- 348 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 348 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---
T ss_pred CCChhHHHHHHHHHHHhcC-CcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---
Confidence 4578899999999999999 5664 4444332334556655432 235688888899999985211 111
Q ss_pred hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC
Q 048113 120 SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC 163 (339)
Q Consensus 120 ~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~ 163 (339)
+......++..+....+.. .....+.+....++-+|.+|...
T Consensus 349 ~~el~~~l~e~l~~~~g~~--E~~~~d~EA~yRlLVALGtLv~~ 390 (425)
T 3pst_A 349 DLELLPIVADAINTKYGPL--EEYQECEEAAYRLTVAYGNLATV 390 (425)
T ss_dssp CTTHHHHHHHHHHHTTTTS--HHHHTSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccc--ccccCCHHHHHHHHHHHHHHHhc
Confidence 1234455666555100000 00004788888899999998763
No 157
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=42.88 E-value=31 Score=30.63 Aligned_cols=108 Identities=11% Similarity=0.045 Sum_probs=63.0
Q ss_pred ccCCHHHHHHHHHHHHHhccCCcch-hhHHhhcCChHHHHHhhc--------CCChhHHHHHHHHHHHHhcCcc-chHHH
Q 048113 49 CSQDYEAIEAALLSLLSLACGSERN-KIRIVKSGIVPVLLEVLQ--------CQSTTLIELTVAAMLILSSCLE-NKLEI 118 (339)
Q Consensus 49 ~~~~~~~~~~A~~~L~~Ls~~~~~~-~~~i~~~g~i~~Lv~lL~--------~~~~~~~~~a~~~L~nLs~~~~-~~~~i 118 (339)
.+..+..+..++++++||-. ++.. +..+........++..+. ..+..++..++..++|++.... .+.
T Consensus 209 ~~~~~~n~MltlR~laNlF~-~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~-- 285 (362)
T 3l3f_X 209 GNKNITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-- 285 (362)
T ss_dssp TCSSHHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS--
T ss_pred CCCChhHHHHHHHHHHHhcc-CcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc--
Confidence 34578899999999999999 5664 444432222334444432 1235688888899999985211 111
Q ss_pred HhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113 119 ASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST 162 (339)
Q Consensus 119 ~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~ 162 (339)
+......++..+....+.. .....+.+....++-+|.+|..
T Consensus 286 -~~el~~~l~~~l~~~~g~~--E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 286 -DLELLPIVADAINTKYGPL--EEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp -CTTHHHHHHHHHHHTTTTS--HHHHTSHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHhhcccc--ccccCCHHHHHHHHHHHHHHHh
Confidence 1234455666665100000 0000478888889999999875
No 158
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=41.04 E-value=1.6e+02 Score=24.63 Aligned_cols=140 Identities=11% Similarity=0.094 Sum_probs=84.0
Q ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113 3 EMLMDNLL---NGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV 78 (339)
Q Consensus 3 ~~Lv~~L~---s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~ 78 (339)
+.++++|+ ....+.+...+...+.+..+ ... .-...++.++.+-.+.+.++|.-.+..+...+...++ .
T Consensus 15 ~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~--ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~-----l 87 (257)
T 3gs3_A 15 AKVVDWCNELVIASPSTKCELLAKVQETVLGSCAE--LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVE-----L 87 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGG--GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG-----G
T ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHh--HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH-----H
Confidence 45667775 22335777777777776654 221 1144566666766667889999988888877753222 2
Q ss_pred hcCChHHHHHhhcCCChhHHHHHHHHHHHH--------hcCccch---HHHH-h-cchHHHHHHHhcCCCCCCCCccCCC
Q 048113 79 KSGIVPVLLEVLQCQSTTLIELTVAAMLIL--------SSCLENK---LEIA-S-SGAIQRLVEILNGDLADDDNSYGRI 145 (339)
Q Consensus 79 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nL--------s~~~~~~---~~i~-~-~g~i~~Lv~ll~~~~~~~~~~~~~~ 145 (339)
-...++.|..++..+++.+...+..+..++ +.++... ...= . ...-..+++++++ .
T Consensus 88 ~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s-----------~ 156 (257)
T 3gs3_A 88 LPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDN-----------E 156 (257)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGS-----------S
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHcc-----------C
Confidence 234577888888888888777666554333 2222211 1110 1 1233455666666 7
Q ss_pred CHHHHHHHHHHHHhh
Q 048113 146 SVQAKIDAIATLHNL 160 (339)
Q Consensus 146 ~~~~~~~a~~~L~nL 160 (339)
+..++..+++.+..+
T Consensus 157 n~gvkl~~iKF~e~v 171 (257)
T 3gs3_A 157 NDGIRTNAIKFLEGV 171 (257)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHH
Confidence 888888888776654
No 159
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=38.81 E-value=32 Score=31.22 Aligned_cols=100 Identities=10% Similarity=0.048 Sum_probs=65.6
Q ss_pred cCCCHHHHHHHHHHHHHHHHH--HHHHHHh-cCChHHHHHHhcc--------CCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113 10 LNGERETQIQAANELGKLSRR--QKHKLVE-RGIIAPLISMLCS--------QDYEAIEAALLSLLSLACGSERNKIRIV 78 (339)
Q Consensus 10 ~s~~~~~~~~a~~~L~~l~~~--~~~~i~~-~g~i~~Lv~lL~~--------~~~~~~~~A~~~L~~Ls~~~~~~~~~i~ 78 (339)
.+.++..++-++++++|+..+ ....+.. ......+++.+.+ .+..++..++..+.|+|......+.
T Consensus 272 ~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~--- 348 (425)
T 3pst_A 272 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 348 (425)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---
T ss_pred CCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---
Confidence 356788999999999999876 3444443 3234555554421 2457888888999999983221111
Q ss_pred hcCChHHHHHhhc---------CCChhHHHHHHHHHHHHhcCc
Q 048113 79 KSGIVPVLLEVLQ---------CQSTTLIELTVAAMLILSSCL 112 (339)
Q Consensus 79 ~~g~i~~Lv~lL~---------~~~~~~~~~a~~~L~nLs~~~ 112 (339)
+....+.++.++. ..+++..-.++.+|.+|...+
T Consensus 349 ~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 349 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1234456666665 247888889999999998643
No 160
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=35.53 E-value=21 Score=31.70 Aligned_cols=100 Identities=10% Similarity=0.042 Sum_probs=64.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHH--HHHHHHhc-CChHHHHHHhc--------cCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113 10 LNGERETQIQAANELGKLSRR--QKHKLVER-GIIAPLISMLC--------SQDYEAIEAALLSLLSLACGSERNKIRIV 78 (339)
Q Consensus 10 ~s~~~~~~~~a~~~L~~l~~~--~~~~i~~~-g~i~~Lv~lL~--------~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~ 78 (339)
.+..+..++-++++++|+..+ ....+... .....+++.+. ..+..++..++..+.|+|......+.
T Consensus 209 ~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~--- 285 (362)
T 3l3f_X 209 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 285 (362)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---
T ss_pred CCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---
Confidence 356788999999999999876 34444432 12333444331 12557888888899999983221111
Q ss_pred hcCChHHHHHhhc---------CCChhHHHHHHHHHHHHhcCc
Q 048113 79 KSGIVPVLLEVLQ---------CQSTTLIELTVAAMLILSSCL 112 (339)
Q Consensus 79 ~~g~i~~Lv~lL~---------~~~~~~~~~a~~~L~nLs~~~ 112 (339)
+....+.++.++. ..+++..-.++.+|++|...+
T Consensus 286 ~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 286 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1334456677666 357888889999999998643
No 161
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=34.55 E-value=43 Score=25.65 Aligned_cols=73 Identities=15% Similarity=0.236 Sum_probs=51.5
Q ss_pred CcHHHHHHHhhc-CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHH-HHHhhhc---CCHHHHHHHHHHHHHHhc
Q 048113 219 GAIRALVETIEE-GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPG-LLQLSVD---GTWRAKNMARDLLLLLRD 291 (339)
Q Consensus 219 g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~-L~~ll~~---~~~~~~~~A~~~L~~l~~ 291 (339)
.++..|.+-|.. .++.++..|+..|-.+..+.+..+...+.....+.- |++++.. ....++.+...++...+.
T Consensus 53 eA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 53 DAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 356666766664 467778888888888887777666666665556653 6666653 245799999999988876
No 162
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=27.68 E-value=2e+02 Score=22.92 Aligned_cols=148 Identities=9% Similarity=0.062 Sum_probs=78.4
Q ss_pred HHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHh
Q 048113 104 AMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLI 183 (339)
Q Consensus 104 ~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll 183 (339)
+|..|..++.-.+ .+|.++.++.+.- .....+.......+.....|..++...-.-.=.-.+|.++..+
T Consensus 28 aL~sL~~D~gL~~------LlPyf~~fI~~~v-----~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCl 96 (196)
T 4atg_A 28 AIECLEKESGLQQ------LVPYFIQHISELI-----LKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCV 96 (196)
T ss_dssp HHHHHHHCSSCTT------THHHHHHHHHHHH-----HHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHH
T ss_pred HHHHHhcCCChhh------hHHHHHHHHHHHH-----HhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 4445555444443 5777776664310 0001467777778888888887776543332223677777777
Q ss_pred hccccC-chHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC--ChHHHHHHHHHHHHhhccCchhHHHHHHh
Q 048113 184 HSSEKS-SGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEG--SPQCKEHAVAILLLICKSCRDKYRSSILK 260 (339)
Q Consensus 184 ~~~~~~-~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 260 (339)
-...-. ..+++.|...|...+.........+ + ......+.+.+.++ +.....-|+..|..+.. + .++
T Consensus 97 l~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L-~-~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~---~-----~vr 166 (196)
T 4atg_A 97 IGKSIVDDDVRKMSADIVKYIYDTYSRSYKTL-A-PRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK---N-----VVN 166 (196)
T ss_dssp HCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTH-H-HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH---H-----HHH
T ss_pred HhcccCHHHHHHHHHHHHHHHHHHhCccCchH-H-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH---H-----HHH
Confidence 443211 2689999999984333222222222 1 23455566655543 34455555555555532 2 222
Q ss_pred cCChHHHHHhhh
Q 048113 261 EGVMPGLLQLSV 272 (339)
Q Consensus 261 ~g~i~~L~~ll~ 272 (339)
.-.+|.|-...+
T Consensus 167 ~~llP~l~~~~~ 178 (196)
T 4atg_A 167 TVIREHAEEYKR 178 (196)
T ss_dssp THHHHHHHHHHH
T ss_pred HhhhcCHHHHHH
Confidence 234566655544
No 163
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=25.74 E-value=2.9e+02 Score=22.98 Aligned_cols=111 Identities=12% Similarity=0.127 Sum_probs=69.9
Q ss_pred CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHH--------h
Q 048113 219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLL--------R 290 (339)
Q Consensus 219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l--------~ 290 (339)
.+++.++.+-.+.+.+++...+..+...|..... .. ...++.|..++++.++.+.+++..+...+ +
T Consensus 53 ~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~-l~-----~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~ 126 (257)
T 3gs3_A 53 EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVE-LL-----PHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLC 126 (257)
T ss_dssp HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG-GH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666777766667788999898888888755322 22 23688888999988999888777765554 3
Q ss_pred ccCCCcchhhhhhhHHHHHHHHHHH----hcCcccchHHHHHHHHHHHHh
Q 048113 291 DCSSFGSRSKQLKNELVEQIMQEID----AEGDTVAGTTLRLVEEMIAKL 336 (339)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~a~~~l~~~v~~~ 336 (339)
.++.. .......++.+..+=..+. .+.+.++-.|-++++.+|-.-
T Consensus 127 ~~~~~-~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~q 175 (257)
T 3gs3_A 127 SLMEP-GDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQ 175 (257)
T ss_dssp TSSSC-CHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCC-cchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhh
Confidence 33321 0011233444444433333 334666777999999888543
No 164
>2oxl_A Hypothetical protein YMGB; bacterial protein, biofilm, acid resistance, DNA binding Pro dimer, gene regulation; HET: BOG; 1.80A {Escherichia coli}
Probab=20.58 E-value=1.6e+02 Score=18.77 Aligned_cols=17 Identities=6% Similarity=0.456 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhcCccc
Q 048113 305 ELVEQIMQEIDAEGDTV 321 (339)
Q Consensus 305 ~~~~~i~~~~~~~~~~~ 321 (339)
.++..++..+...++..
T Consensus 28 aIi~~LI~rLE~~~d~~ 44 (64)
T 2oxl_A 28 NIILSLIHSLETTSDIL 44 (64)
T ss_dssp HHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHcCCCHH
Confidence 44444444444433333
Done!