BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048114
(234 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CT7|A Chain A, Solution Structure Of The Ibr Domain Of The Ring Finger
Protein 31 Protein
Length = 86
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 124 LCEAVILGAQKF-YCPFKDCSALLIDDGGEAIRESVCPDCNRMFCAQCKVPW---HAGIR 179
L E V++ KF +C CS I + + E+ CP C++ FC +CK W H G
Sbjct: 14 LTEGVLMRDPKFLWCA--QCSFGFIYEREQL--EATCPQCHQTFCVRCKRQWEEQHRGRS 69
Query: 180 CAEFQKLHKDEREP 193
C +FQ + P
Sbjct: 70 CEDFQNWKRMNSGP 83
>pdb|1WIM|A Chain A, Solution Structure Of The Ring Finger Domain Of The Human
Ubcm4-Interacting Protein 4
Length = 94
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 50 CDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENI-TSINCPVADC--KGVLEPE 106
C +C+ ++ +I C +CT C+ +YV ++E + T+I+CP A C +G L+
Sbjct: 8 CKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67
Query: 107 YCRDILPEDVFNRW 120
++ ++ R+
Sbjct: 68 EIECMVAAEIMQRY 81
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 38 VTIEERIETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVA 97
+ + + I+ C IC E + + I CSH+YC+ C+ K+++ K Q CP
Sbjct: 13 LAVMKTIDDLLRCGICFE--YFNIAMIIPQCSHNYCSLCIRKFLSYKTQ-------CPTC 63
Query: 98 DCKGVLEPE 106
C V EP+
Sbjct: 64 -CVTVTEPD 71
>pdb|2JMO|A Chain A, Ibr Domain Of Human Parkin
Length = 80
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 15/75 (20%)
Query: 112 LPEDVFNRWGNALCEAVILGAQKFYCPFKDCSALLIDD---------GGEAIRESVCPDC 162
+ E+ +NR+ E +L CP C A L+ + GG + C
Sbjct: 3 MGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGL------GC 56
Query: 163 NRMFCAQCKVPWHAG 177
FC +CK +H G
Sbjct: 57 GFAFCRECKEAYHEG 71
>pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide
pdb|2H4F|A Chain A, Sir2-P53 Peptide-Nad+
pdb|2H4J|A Chain A, Sir2-Deacetylated Peptide (From Enzymatic Turnover In
Crystal)
pdb|2H2D|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2F|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2G|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|2H2H|A Chain A, The Structural Basis Of Sirtuin Substrate Specificity
pdb|2H2I|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|3D4B|A Chain A, Crystal Structure Of Sir2tm In Complex With Acetyl P53
Peptide And Dadme-Nad+
pdb|3D81|A Chain A, Sir2-S-Alkylamidate Complex Crystal Structure
pdb|3PDH|A Chain A, Structure Of Sir2tm Bound To A Propionylated Peptide
Length = 246
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 72 YCTECMTKYVASKLQENITSINCPV-ADCKGVLEPE--YCRDILPEDVFNRWGNALCEA- 127
YC C KY + + + S + P+ DC ++ P + + LP+D A
Sbjct: 123 YCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRAS 182
Query: 128 --VILGAQKFYCPFKDCSALLIDDGGEAI 154
++LG+ P + + + GG+ +
Sbjct: 183 LMIVLGSSLVVYPAAELPLITVRSGGKLV 211
>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|2H59|B Chain B, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|3JR3|A Chain A, Sir2 Bound To Acetylated Peptide
Length = 246
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 72 YCTECMTKYVASKLQENITSINCPV-ADCKGVLEPE--YCRDILPEDVFNRWGNALCEA- 127
YC C KY + + + S + P+ DC ++ P + + LP+D A
Sbjct: 123 YCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRAS 182
Query: 128 --VILGAQKFYCPFKDCSALLIDDGGEAI 154
++LG+ P + + + GG+ +
Sbjct: 183 LMIVLGSSLVVYPAAELPLITVRSGGKLV 211
>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad
Length = 246
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 72 YCTECMTKYVASKLQENITSINCPV-ADCKGVLEPE--YCRDILPEDVFNRWGNALCEA- 127
YC C KY + + + S + P+ DC ++ P + + LP+D A
Sbjct: 123 YCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRAS 182
Query: 128 --VILGAQKFYCPFKDCSALLIDDGGEAI 154
++LG+ P + + + GG+ +
Sbjct: 183 LMIVLGSSLVVYPAAELPLITVRSGGKLV 211
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 49 ICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCK 100
+C IC E D+ I+ C H CT C+T + S+ Q CP C+
Sbjct: 336 LCKICAE---NDKDVKIEPCGHLMCTSCLTSWQESEGQ------GCPFCRCE 378
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 49 ICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCK 100
+C IC E D+ I+ C H CT C+T + S+ Q CP C+
Sbjct: 336 LCKICAE---NDKDVKIEPCGHLMCTSCLTSWQESEGQ------GCPFCRCE 378
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 49 ICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCK 100
+C IC E D+ I+ C H CT C+T + S+ Q CP C+
Sbjct: 334 LCKICAE---NDKDVKIEPCGHLMCTSCLTSWQESEGQ------GCPFCRCE 376
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 49 ICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCK 100
+C IC E D+ I+ C H CT C+T + S+ Q CP C+
Sbjct: 334 LCKICAE---NDKDVKIEPCGHLMCTSCLTSWQESEGQ------GCPFCRCE 376
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 49 ICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCK 100
+C IC E D+ I+ C H CT C+T + S+ Q CP C+
Sbjct: 29 LCKICAE---NDKDVKIEPCGHLMCTSCLTSWQESEGQ------GCPFCRCE 71
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 49 ICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCK 100
+C IC E D+ I+ C H CT C+T + S+ Q CP C+
Sbjct: 26 LCKICAE---NDKDVKIEPCGHLMCTSCLTSWQESEGQ------GCPFCRCE 68
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 29 GQCSNSKNEVTIEERIETSFICDICVEPKSTDESFSIK--GCSHSYCTECMTKYVASKLQ 86
G +S N + E +E C IC+E T+E K C H+ C +C+ K +AS
Sbjct: 1 GSSGSSGNLDALREVLE----CPICME-SFTEEQLRPKLLHCGHTICRQCLEKLLAS--- 52
Query: 87 ENITSINCP 95
+I + CP
Sbjct: 53 -SINGVRCP 60
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 49 ICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCK 100
+C IC E D+ I+ C H CT C+T + S Q CP C+
Sbjct: 340 LCKICAE---NDKDVKIEPCGHLMCTSCLTAWQESDGQ------GCPFCRCE 382
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 42 ERIETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCK 100
E T +C IC E D+ I+ C H CT C+T + S Q CP C+
Sbjct: 21 EMGSTFQLCKICAE---NDKDVKIEPCGHLMCTSCLTAWQESDGQ------GCPFCRCE 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,047,385
Number of Sequences: 62578
Number of extensions: 278338
Number of successful extensions: 510
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 495
Number of HSP's gapped (non-prelim): 36
length of query: 234
length of database: 14,973,337
effective HSP length: 96
effective length of query: 138
effective length of database: 8,965,849
effective search space: 1237287162
effective search space used: 1237287162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)