Query 048114
Match_columns 234
No_of_seqs 189 out of 1396
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 10:49:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wim_A KIAA0161 protein; ring 99.7 1.2E-18 4E-23 118.2 6.0 86 45-130 3-91 (94)
2 1wd2_A Ariadne-1 protein homol 99.4 9.4E-14 3.2E-18 84.8 1.5 31 204-234 3-36 (60)
3 2ct7_A Ring finger protein 31; 99.3 2.6E-14 9E-19 94.5 -3.1 72 114-189 4-79 (86)
4 2jmo_A Parkin; IBR, E3 ligase, 99.3 2.3E-14 7.9E-19 93.3 -5.0 69 111-182 2-75 (80)
5 3hcs_A TNF receptor-associated 99.2 1.5E-11 5.2E-16 92.1 4.1 132 43-221 14-151 (170)
6 4ap4_A E3 ubiquitin ligase RNF 99.1 1.4E-12 4.7E-17 93.7 -4.2 118 45-220 5-126 (133)
7 2djb_A Polycomb group ring fin 98.9 3.2E-10 1.1E-14 72.4 2.7 56 44-110 12-67 (72)
8 2ct2_A Tripartite motif protei 98.9 4.5E-10 1.6E-14 74.5 3.5 61 44-110 12-73 (88)
9 2ecv_A Tripartite motif-contai 98.9 5.1E-10 1.7E-14 73.7 2.8 59 44-108 16-74 (85)
10 1rmd_A RAG1; V(D)J recombinati 98.9 9E-10 3.1E-14 77.1 4.2 83 45-149 21-103 (116)
11 2ysl_A Tripartite motif-contai 98.9 3.4E-10 1.2E-14 72.4 1.5 55 44-107 17-71 (73)
12 2ecw_A Tripartite motif-contai 98.9 7.3E-10 2.5E-14 72.9 3.2 60 44-109 16-75 (85)
13 3knv_A TNF receptor-associated 98.9 1.6E-10 5.5E-15 83.6 -0.2 94 42-149 26-119 (141)
14 2ysj_A Tripartite motif-contai 98.9 1.9E-09 6.6E-14 66.8 4.8 45 44-95 17-61 (63)
15 3hct_A TNF receptor-associated 98.9 2.8E-09 9.5E-14 74.8 5.6 85 43-150 14-98 (118)
16 3lrq_A E3 ubiquitin-protein li 98.9 1.2E-09 4.2E-14 74.3 3.3 61 41-111 16-76 (100)
17 2ecy_A TNF receptor-associated 98.8 7.3E-10 2.5E-14 69.4 1.6 53 44-107 12-64 (66)
18 2y43_A E3 ubiquitin-protein li 98.8 2.9E-09 1E-13 72.2 4.6 54 44-108 19-72 (99)
19 1t1h_A Gspef-atpub14, armadill 98.8 1.7E-09 5.8E-14 70.0 3.3 67 44-121 5-72 (78)
20 2egp_A Tripartite motif-contai 98.8 1.4E-10 4.9E-15 75.4 -2.2 61 44-109 9-69 (79)
21 3ztg_A E3 ubiquitin-protein li 98.8 1E-09 3.5E-14 73.4 1.5 50 44-103 10-60 (92)
22 2ecm_A Ring finger and CHY zin 98.8 3.9E-09 1.3E-13 63.4 3.9 50 46-104 4-54 (55)
23 2kiz_A E3 ubiquitin-protein li 98.8 6E-09 2E-13 65.8 4.9 51 45-104 12-62 (69)
24 1jm7_A BRCA1, breast cancer ty 98.8 3.3E-09 1.1E-13 73.6 3.8 74 44-126 18-92 (112)
25 1iym_A EL5; ring-H2 finger, ub 98.8 3E-09 1E-13 63.9 2.5 52 44-104 2-54 (55)
26 2ect_A Ring finger protein 126 98.8 3.9E-09 1.4E-13 68.3 3.1 55 45-108 13-67 (78)
27 1e4u_A Transcriptional repress 98.7 4.9E-09 1.7E-13 67.7 2.8 55 45-107 9-64 (78)
28 3ng2_A RNF4, snurf, ring finge 98.7 1.4E-09 4.9E-14 69.0 0.1 57 45-110 8-68 (71)
29 2yur_A Retinoblastoma-binding 98.7 6.6E-09 2.3E-13 66.5 3.2 50 44-103 12-62 (74)
30 2d8t_A Dactylidin, ring finger 98.7 3.9E-09 1.3E-13 67.1 2.0 54 45-110 13-66 (71)
31 2ep4_A Ring finger protein 24; 98.7 1.1E-08 3.7E-13 65.5 3.8 51 45-104 13-63 (74)
32 2xeu_A Ring finger protein 4; 98.7 1.9E-09 6.6E-14 66.9 0.1 55 47-110 3-61 (64)
33 1g25_A CDK-activating kinase a 98.7 5.8E-09 2E-13 65.0 2.1 56 47-110 3-60 (65)
34 2csy_A Zinc finger protein 183 98.7 1.7E-08 5.7E-13 65.8 4.3 48 45-104 13-60 (81)
35 2ecj_A Tripartite motif-contai 98.7 1E-08 3.5E-13 62.3 2.8 45 44-95 12-56 (58)
36 2ea6_A Ring finger protein 4; 98.7 1.1E-08 3.6E-13 64.5 2.9 51 45-104 13-67 (69)
37 2yu4_A E3 SUMO-protein ligase 98.7 1.9E-08 6.6E-13 67.4 4.1 60 45-107 5-65 (94)
38 1x4j_A Ring finger protein 38; 98.7 1.1E-08 3.8E-13 65.6 2.8 52 45-105 21-72 (75)
39 2l0b_A E3 ubiquitin-protein li 98.6 1.9E-08 6.3E-13 67.1 3.7 52 45-105 38-89 (91)
40 1jm7_B BARD1, BRCA1-associated 98.6 1.5E-09 5.2E-14 76.0 -1.9 52 42-106 17-68 (117)
41 2ckl_A Polycomb group ring fin 98.6 1.2E-08 4.2E-13 70.3 2.7 51 44-105 12-62 (108)
42 3fl2_A E3 ubiquitin-protein li 98.6 2E-08 6.9E-13 71.0 2.7 52 43-105 48-99 (124)
43 2kr4_A Ubiquitin conjugation f 98.5 1.7E-07 5.7E-12 61.6 6.3 52 44-107 11-62 (85)
44 1chc_A Equine herpes virus-1 r 98.5 5E-08 1.7E-12 61.2 3.5 48 46-104 4-51 (68)
45 4ayc_A E3 ubiquitin-protein li 98.5 2.4E-08 8.1E-13 72.0 1.9 49 44-104 50-98 (138)
46 1wgm_A Ubiquitin conjugation f 98.5 9.9E-08 3.4E-12 64.4 4.5 51 44-106 19-70 (98)
47 1z6u_A NP95-like ring finger p 98.5 7E-08 2.4E-12 70.4 3.4 52 44-106 75-126 (150)
48 1v87_A Deltex protein 2; ring- 98.5 1.4E-07 4.8E-12 65.5 4.7 54 47-104 25-93 (114)
49 3htk_C E3 SUMO-protein ligase 98.4 5.1E-08 1.7E-12 76.4 2.0 59 44-109 178-236 (267)
50 1bor_A Transcription factor PM 98.4 4.3E-08 1.5E-12 59.1 0.5 46 45-105 4-49 (56)
51 2ckl_B Ubiquitin ligase protei 98.4 1.3E-07 4.3E-12 70.2 2.7 50 45-104 52-101 (165)
52 2kre_A Ubiquitin conjugation f 98.4 2.3E-07 7.8E-12 62.8 3.4 51 44-106 26-76 (100)
53 2ecn_A Ring finger protein 141 98.4 2.2E-08 7.6E-13 63.2 -1.5 47 45-104 13-59 (70)
54 3l11_A E3 ubiquitin-protein li 98.3 1.8E-07 6.2E-12 65.1 2.4 48 47-105 15-62 (115)
55 2ecg_A Baculoviral IAP repeat- 98.3 2.3E-07 7.8E-12 59.4 2.1 47 43-105 21-68 (75)
56 4ic3_A E3 ubiquitin-protein li 98.2 2.2E-07 7.4E-12 59.3 1.0 46 43-104 20-66 (74)
57 2ecl_A Ring-box protein 2; RNF 98.2 9.3E-07 3.2E-11 57.4 3.4 50 47-105 15-76 (81)
58 2d8s_A Cellular modulator of i 98.0 5.2E-06 1.8E-10 53.6 4.1 51 47-105 15-70 (80)
59 2c2l_A CHIP, carboxy terminus 98.0 2.5E-06 8.5E-11 68.4 2.7 52 45-107 206-257 (281)
60 2f42_A STIP1 homology and U-bo 98.0 3.9E-06 1.3E-10 62.5 3.4 53 44-107 103-155 (179)
61 4ap4_A E3 ubiquitin ligase RNF 98.0 1.8E-06 6.1E-11 61.3 1.1 57 45-110 70-130 (133)
62 2ea5_A Cell growth regulator w 97.9 4.8E-06 1.7E-10 52.0 2.5 44 45-104 13-57 (68)
63 2yho_A E3 ubiquitin-protein li 97.9 1.6E-06 5.6E-11 55.9 0.3 46 44-105 15-61 (79)
64 2y1n_A E3 ubiquitin-protein li 97.9 1.2E-05 4.3E-10 66.8 5.6 51 44-105 329-379 (389)
65 2vje_A E3 ubiquitin-protein li 97.8 7.9E-06 2.7E-10 50.4 2.5 47 47-104 8-56 (64)
66 2vje_B MDM4 protein; proto-onc 97.8 7.9E-06 2.7E-10 50.2 2.4 47 47-104 7-55 (63)
67 3dpl_R Ring-box protein 1; ubi 97.8 1.5E-05 5.2E-10 54.3 3.9 49 47-104 37-100 (106)
68 4a0k_B E3 ubiquitin-protein li 97.5 1.5E-05 5E-10 55.2 0.0 50 47-105 48-112 (117)
69 3t6p_A Baculoviral IAP repeat- 97.2 5.2E-05 1.8E-09 62.5 0.5 46 43-104 291-337 (345)
70 2ct0_A Non-SMC element 1 homol 97.2 0.00044 1.5E-08 43.6 4.1 51 45-104 13-63 (74)
71 2bay_A PRE-mRNA splicing facto 96.8 0.00061 2.1E-08 41.3 2.4 52 47-109 3-54 (61)
72 3k1l_B Fancl; UBC, ring, RWD, 96.4 0.0015 5E-08 53.2 2.6 59 45-105 306-373 (381)
73 1wd2_A Ariadne-1 protein homol 96.2 0.0044 1.5E-07 37.3 3.3 38 133-174 5-44 (60)
74 1vyx_A ORF K3, K3RING; zinc-bi 96.0 0.011 3.6E-07 35.6 4.3 49 46-104 5-58 (60)
75 3vk6_A E3 ubiquitin-protein li 95.7 0.0062 2.1E-07 40.2 2.7 46 49-104 3-48 (101)
76 2jun_A Midline-1; B-BOX, TRIM, 95.7 0.006 2E-07 40.8 2.6 34 47-80 3-36 (101)
77 2cs3_A Protein C14ORF4, MY039 95.6 0.019 6.7E-07 35.9 4.5 50 45-96 13-63 (93)
78 2k4x_A 30S ribosomal protein S 93.3 0.04 1.4E-06 32.3 1.8 29 205-233 16-45 (55)
79 3nw0_A Non-structural maintena 92.8 0.11 3.6E-06 40.5 4.1 52 46-106 179-230 (238)
80 3j20_Y 30S ribosomal protein S 92.1 0.068 2.3E-06 30.6 1.7 29 205-233 17-46 (50)
81 2ct7_A Ring finger protein 31; 91.7 0.087 3E-06 34.0 2.1 30 205-234 23-53 (86)
82 1vq8_Z 50S ribosomal protein L 91.7 0.065 2.2E-06 34.3 1.4 30 205-234 25-55 (83)
83 2jmo_A Parkin; IBR, E3 ligase, 91.1 0.095 3.2E-06 33.3 1.8 30 205-234 23-60 (80)
84 1pft_A TFIIB, PFTFIIBN; N-term 90.6 0.24 8.2E-06 28.2 3.0 29 206-234 4-34 (50)
85 1weo_A Cellulose synthase, cat 90.2 0.41 1.4E-05 30.6 4.0 59 136-225 18-76 (93)
86 3qt1_I DNA-directed RNA polyme 89.7 0.17 5.8E-06 35.5 2.2 31 204-234 21-56 (133)
87 2jr6_A UPF0434 protein NMA0874 83.6 0.4 1.4E-05 29.3 1.2 29 206-234 7-36 (68)
88 1z60_A TFIIH basal transcripti 82.2 0.3 1E-05 29.0 0.2 36 135-177 16-51 (59)
89 2jne_A Hypothetical protein YF 82.0 0.66 2.3E-05 30.2 1.8 27 206-234 31-58 (101)
90 2d8v_A Zinc finger FYVE domain 81.5 0.6 2.1E-05 28.0 1.4 32 46-81 7-39 (67)
91 2jrp_A Putative cytoplasmic pr 81.4 0.7 2.4E-05 29.2 1.7 24 208-233 3-27 (81)
92 3qt1_I DNA-directed RNA polyme 76.4 1.9 6.5E-05 30.1 2.9 35 130-166 20-56 (133)
93 3vk6_A E3 ubiquitin-protein li 75.7 1.1 3.8E-05 29.4 1.4 18 204-221 34-51 (101)
94 1twf_L ABC10-alpha, DNA-direct 73.7 1.4 4.9E-05 27.0 1.5 26 206-232 27-53 (70)
95 1weo_A Cellulose synthase, cat 73.3 6 0.0002 25.3 4.3 50 47-104 16-69 (93)
96 2hf1_A Tetraacyldisaccharide-1 71.0 1.6 5.6E-05 26.5 1.3 28 207-234 8-36 (68)
97 2js4_A UPF0434 protein BB2007; 70.8 1.8 6.2E-05 26.5 1.5 29 206-234 7-36 (70)
98 1dl6_A Transcription factor II 70.6 3.5 0.00012 24.1 2.7 27 206-232 10-38 (58)
99 2pk7_A Uncharacterized protein 69.2 1.9 6.5E-05 26.3 1.3 28 207-234 8-36 (69)
100 2hu9_A MERP, mercuric transpor 67.1 2.8 9.5E-05 29.1 2.0 46 92-149 2-50 (130)
101 3lqh_A Histone-lysine N-methyl 67.0 1.6 5.5E-05 32.3 0.8 75 47-124 2-84 (183)
102 4ayb_P DNA-directed RNA polyme 67.0 4.5 0.00015 22.4 2.4 30 136-167 5-34 (48)
103 3v43_A Histone acetyltransfera 66.7 25 0.00086 23.3 7.1 52 45-100 3-62 (112)
104 3h0g_I DNA-directed RNA polyme 66.0 3.6 0.00012 27.7 2.3 31 134-166 4-36 (113)
105 3u5c_f 40S ribosomal protein S 64.2 4.2 0.00014 29.0 2.5 29 206-234 117-148 (152)
106 2ko5_A Ring finger protein Z; 63.2 4 0.00014 26.4 2.0 49 44-105 25-73 (99)
107 1zbd_B Rabphilin-3A; G protein 62.8 2.7 9.2E-05 29.3 1.2 34 45-78 53-88 (134)
108 1twf_I B12.6, DNA-directed RNA 62.2 2.7 9.1E-05 28.8 1.1 32 133-166 3-36 (122)
109 1fre_A Nuclear factor XNF7; zi 61.9 5 0.00017 21.3 2.0 26 154-179 12-38 (42)
110 1k81_A EIF-2-beta, probable tr 61.8 3.1 0.00011 21.8 1.1 25 209-233 2-30 (36)
111 2jny_A Uncharacterized BCR; st 60.6 3.5 0.00012 25.0 1.3 30 205-234 8-38 (67)
112 1wii_A Hypothetical UPF0222 pr 60.3 2.8 9.7E-05 26.7 0.9 28 207-234 23-57 (85)
113 3m7n_A Putative uncharacterize 60.3 5.3 0.00018 29.3 2.5 24 207-232 140-164 (179)
114 3u5c_f 40S ribosomal protein S 59.3 3.4 0.00012 29.5 1.3 32 135-168 119-150 (152)
115 2ffw_A Midline-1; B-BOX, ring 59.0 16 0.00055 22.6 4.3 35 47-81 30-65 (78)
116 2apo_B Ribosome biogenesis pro 58.9 5.1 0.00017 23.6 1.8 15 205-219 4-18 (60)
117 2o35_A Hypothetical protein DU 58.5 6.1 0.00021 25.8 2.2 16 72-87 43-58 (105)
118 3na7_A HP0958; flagellar bioge 57.2 28 0.00096 26.9 6.4 20 107-126 168-187 (256)
119 2xzm_9 RPS31E; ribosome, trans 56.8 6.3 0.00022 29.2 2.4 28 206-234 112-141 (189)
120 1wfl_A Zinc finger protein 216 56.6 4.3 0.00015 25.0 1.2 25 206-234 24-48 (74)
121 1wfh_A Zinc finger (AN1-like) 56.0 4.4 0.00015 24.2 1.2 26 205-234 13-38 (64)
122 2kpi_A Uncharacterized protein 55.6 5.8 0.0002 23.0 1.6 27 206-234 9-38 (56)
123 2lbm_A Transcriptional regulat 54.6 50 0.0017 23.1 6.6 51 47-102 63-117 (142)
124 3fyb_A Protein of unknown func 54.2 5.7 0.00019 25.9 1.5 16 72-87 42-57 (104)
125 1wil_A KIAA1045 protein; ring 50.9 12 0.00041 23.7 2.6 34 46-80 14-47 (89)
126 1nee_A EIF-2-beta, probable tr 49.7 15 0.00051 25.7 3.3 35 197-233 94-132 (138)
127 2yvr_A Transcription intermedi 49.7 2.3 8E-05 23.7 -0.7 27 154-180 16-42 (50)
128 1wg2_A Zinc finger (AN1-like) 49.5 5.9 0.0002 23.7 1.0 25 206-234 14-38 (64)
129 2zet_C Melanophilin; complex, 48.9 6.3 0.00022 28.1 1.3 32 46-77 67-100 (153)
130 1qxf_A GR2, 30S ribosomal prot 47.2 14 0.00047 22.2 2.3 31 135-168 8-38 (66)
131 1vfy_A Phosphatidylinositol-3- 45.8 9.2 0.00031 23.4 1.5 32 48-79 12-44 (73)
132 3iz6_X 40S ribosomal protein S 45.6 13 0.00045 23.5 2.2 31 135-168 37-67 (86)
133 1x4v_A Hypothetical protein LO 45.4 10 0.00035 22.6 1.6 32 135-173 13-44 (63)
134 2yw8_A RUN and FYVE domain-con 45.4 14 0.00049 23.0 2.5 36 131-172 16-51 (82)
135 2lri_C Autoimmune regulator; Z 45.0 15 0.0005 22.0 2.3 49 45-101 10-58 (66)
136 3jyw_9 60S ribosomal protein L 44.9 14 0.00047 22.7 2.1 29 206-234 25-54 (72)
137 3mjh_B Early endosome antigen 44.1 3.9 0.00013 21.1 -0.4 13 46-58 4-16 (34)
138 2csz_A Synaptotagmin-like prot 43.6 8.1 0.00028 24.0 1.0 33 45-77 23-57 (76)
139 1wfe_A Riken cDNA 2310008M20 p 43.5 17 0.00059 23.1 2.6 32 135-173 26-57 (86)
140 1wff_A Riken cDNA 2810002D23 p 43.3 10 0.00036 24.0 1.5 27 205-234 23-49 (85)
141 2k16_A Transcription initiatio 42.5 14 0.00049 22.5 2.1 34 45-78 16-49 (75)
142 3a1b_A DNA (cytosine-5)-methyl 42.5 11 0.00037 27.1 1.6 49 47-100 79-132 (159)
143 3h0g_L DNA-directed RNA polyme 42.0 17 0.00058 21.6 2.2 27 135-166 22-48 (63)
144 2akl_A PHNA-like protein PA012 41.3 9.2 0.00031 26.3 1.1 28 134-166 27-54 (138)
145 3t7l_A Zinc finger FYVE domain 41.3 10 0.00036 24.2 1.3 34 47-80 20-54 (90)
146 3j20_W 30S ribosomal protein S 40.5 20 0.00068 21.3 2.3 31 135-168 16-46 (63)
147 2kdx_A HYPA, hydrogenase/ureas 40.0 31 0.0011 23.1 3.7 26 134-165 73-99 (119)
148 3ddt_A E3 ubiquitin-protein li 39.0 4.2 0.00015 22.4 -0.8 25 155-179 17-42 (48)
149 2did_A Tripartite motif protei 38.6 6.1 0.00021 22.3 -0.1 26 154-179 17-43 (53)
150 1x4u_A Zinc finger, FYVE domai 38.3 18 0.00062 22.6 2.1 32 135-172 15-46 (84)
151 2zkr_2 60S ribosomal protein L 37.5 16 0.00055 23.7 1.7 22 208-232 17-39 (97)
152 1z2q_A LM5-1; membrane protein 37.2 19 0.00066 22.5 2.1 32 135-172 22-53 (84)
153 2xzm_6 RPS27E; ribosome, trans 37.2 21 0.0007 22.4 2.1 31 135-168 33-63 (81)
154 3v2d_5 50S ribosomal protein L 37.1 14 0.00048 21.7 1.3 24 204-232 27-51 (60)
155 1gh9_A 8.3 kDa protein (gene M 37.0 16 0.00056 22.2 1.6 13 205-218 19-31 (71)
156 1x4s_A Protein FON, zinc finge 37.0 16 0.00054 21.4 1.5 37 45-81 9-46 (59)
157 3cc2_Z 50S ribosomal protein L 36.0 15 0.00051 24.8 1.4 30 205-234 58-88 (116)
158 3ql9_A Transcriptional regulat 35.7 47 0.0016 22.8 4.0 50 47-101 57-110 (129)
159 1f62_A Transcription factor WS 35.7 26 0.0009 19.3 2.3 31 49-79 2-32 (51)
160 2csv_A Tripartite motif protei 35.5 5.3 0.00018 24.2 -0.8 29 154-182 27-55 (72)
161 1joc_A EEA1, early endosomal a 35.2 16 0.00056 24.9 1.6 32 135-172 70-101 (125)
162 2aus_D NOP10, ribosome biogene 35.1 15 0.0005 21.6 1.1 15 205-219 3-17 (60)
163 2dja_A Midline-2; tripartite m 34.1 6 0.00021 24.7 -0.7 28 154-181 28-56 (84)
164 2yrg_A Tripartite motif-contai 33.9 8 0.00027 22.4 -0.1 26 154-179 23-49 (59)
165 3u5c_b RP61, YS20, 40S ribosom 33.8 26 0.0009 21.9 2.2 31 135-168 35-65 (82)
166 2i5o_A DNA polymerase ETA; zin 33.6 21 0.00071 18.9 1.5 16 204-219 6-21 (39)
167 3j21_i 50S ribosomal protein L 33.5 15 0.00053 23.1 1.1 30 205-234 33-63 (83)
168 2a51_A Nucleocapsid protein; s 33.0 29 0.00098 18.0 2.0 17 166-182 2-18 (39)
169 2dlq_A GLI-kruppel family memb 32.9 49 0.0017 21.3 3.8 41 46-104 6-46 (124)
170 2d74_B Translation initiation 32.6 19 0.00066 25.4 1.7 27 207-233 104-134 (148)
171 1x6a_A LIMK-2, LIM domain kina 32.5 38 0.0013 20.5 3.0 36 47-82 41-76 (81)
172 2pv0_B DNA (cytosine-5)-methyl 32.2 23 0.00077 29.4 2.2 32 47-81 93-126 (386)
173 2d8u_A Ubiquitin ligase TRIM63 31.7 7.5 0.00026 22.8 -0.5 28 154-181 18-46 (64)
174 1ee8_A MUTM (FPG) protein; bet 31.6 27 0.00093 27.2 2.5 26 207-232 235-263 (266)
175 3u6p_A Formamidopyrimidine-DNA 31.6 20 0.00067 28.2 1.7 25 207-231 245-272 (273)
176 1k3x_A Endonuclease VIII; hydr 31.2 20 0.00069 27.9 1.7 24 208-231 235-261 (262)
177 1wys_A Riken cDNA 2310008M20 p 30.5 37 0.0013 20.9 2.5 39 135-182 15-53 (75)
178 2gmg_A Hypothetical protein PF 30.3 78 0.0027 20.8 4.1 61 100-166 22-94 (105)
179 1lv3_A Hypothetical protein YA 30.3 16 0.00054 22.1 0.7 14 205-218 7-20 (68)
180 3j21_g 50S ribosomal protein L 30.3 24 0.00081 20.0 1.4 25 205-233 12-37 (51)
181 1vk6_A NADH pyrophosphatase; 1 30.3 39 0.0013 26.3 3.3 29 205-233 105-134 (269)
182 2xzf_A Formamidopyrimidine-DNA 30.0 24 0.00084 27.6 2.0 26 207-232 242-270 (271)
183 1dsq_A Nucleic acid binding pr 29.9 26 0.00089 16.4 1.4 18 165-182 3-20 (26)
184 3cw2_K Translation initiation 29.5 17 0.00057 25.4 0.9 28 206-233 102-133 (139)
185 4esj_A Type-2 restriction enzy 29.5 12 0.00041 28.7 0.1 33 134-168 34-68 (257)
186 1k82_A Formamidopyrimidine-DNA 29.4 26 0.00089 27.4 2.1 25 207-231 240-267 (268)
187 1wem_A Death associated transc 29.1 39 0.0013 20.5 2.5 31 47-78 16-46 (76)
188 2vpb_A Hpygo1, pygopus homolog 28.8 37 0.0013 20.1 2.3 34 45-78 6-41 (65)
189 3iz5_m 60S ribosomal protein L 28.1 20 0.00068 23.1 1.0 29 206-234 35-64 (92)
190 1y02_A CARP2, FYVE-ring finger 27.5 26 0.0009 23.7 1.6 33 135-173 20-52 (120)
191 1wfk_A Zinc finger, FYVE domai 27.1 42 0.0014 21.2 2.4 33 135-173 10-42 (88)
192 4a17_Y RPL37A, 60S ribosomal p 26.9 21 0.00073 23.4 1.0 30 205-234 34-64 (103)
193 3vhs_A ATPase wrnip1; zinc fin 26.8 5.5 0.00019 18.9 -1.3 21 90-112 5-25 (29)
194 3w0f_A Endonuclease 8-like 3; 26.6 40 0.0014 26.7 2.7 26 208-233 252-282 (287)
195 1x61_A Thyroid receptor intera 26.0 58 0.002 19.1 2.9 34 47-82 33-66 (72)
196 2ri7_A Nucleosome-remodeling f 26.0 12 0.00042 26.9 -0.3 76 45-125 6-82 (174)
197 2be7_D Aspartate carbamoyltran 25.9 18 0.00061 25.7 0.5 33 134-166 105-144 (153)
198 1wep_A PHF8; structural genomi 25.7 30 0.001 21.3 1.5 55 46-105 11-66 (79)
199 1wig_A KIAA1808 protein; LIM d 25.6 23 0.00077 21.3 0.9 34 47-81 31-64 (73)
200 2ec7_A GAG polyprotein (PR55GA 25.4 41 0.0014 18.5 1.9 18 165-182 7-24 (49)
201 2l8e_A Polyhomeotic-like prote 24.9 43 0.0015 18.7 1.9 25 204-228 15-40 (49)
202 1we9_A PHD finger family prote 24.5 25 0.00086 20.5 0.9 34 45-78 4-38 (64)
203 1dvp_A HRS, hepatocyte growth 24.2 40 0.0014 25.3 2.2 18 155-172 176-193 (220)
204 3izc_m 60S ribosomal protein R 24.0 23 0.0008 22.7 0.7 30 205-234 34-64 (92)
205 2jvx_A NF-kappa-B essential mo 23.9 20 0.0007 17.5 0.3 13 46-58 2-14 (28)
206 1ffk_W Ribosomal protein L37AE 23.9 67 0.0023 19.6 2.8 31 204-234 24-55 (73)
207 2cqf_A RNA-binding protein LIN 23.4 53 0.0018 19.2 2.2 18 165-182 8-25 (63)
208 2yqq_A Zinc finger HIT domain- 23.0 72 0.0025 18.4 2.6 33 47-83 12-45 (56)
209 2cur_A Skeletal muscle LIM-pro 23.0 67 0.0023 18.6 2.7 33 47-81 31-63 (69)
210 3a43_A HYPD, hydrogenase nicke 22.3 71 0.0024 22.1 3.1 15 133-149 69-83 (139)
211 2e72_A POGO transposable eleme 22.1 32 0.0011 19.1 0.9 14 205-218 10-23 (49)
212 1qf8_A Casein kinase II; casei 21.5 1.4E+02 0.0048 21.8 4.6 13 132-144 104-116 (182)
213 1odh_A MGCM1; transcription fa 21.4 23 0.00078 25.3 0.3 20 207-232 110-131 (174)
214 1a6b_B Momulv, zinc finger pro 21.3 42 0.0015 17.8 1.3 19 164-182 10-28 (40)
215 3u50_C Telomerase-associated p 21.3 55 0.0019 23.7 2.3 25 207-232 42-67 (172)
216 3pwf_A Rubrerythrin; non heme 21.2 60 0.0021 23.3 2.6 22 136-164 140-161 (170)
217 2li8_A Protein LIN-28 homolog 20.9 60 0.0021 19.7 2.2 18 165-182 25-42 (74)
218 2k5c_A Uncharacterized protein 20.8 55 0.0019 20.4 1.9 21 91-113 8-29 (95)
219 2e9h_A EIF-5, eukaryotic trans 20.6 54 0.0018 23.4 2.1 35 197-233 95-135 (157)
220 1dxg_A Desulforedoxin; non-hem 20.6 79 0.0027 16.1 2.3 15 205-219 4-18 (36)
221 3nyb_B Protein AIR2; polya RNA 20.5 55 0.0019 20.5 2.0 19 164-182 5-23 (83)
222 2e3e_A Defensin, mutant DEF-BB 20.4 17 0.00059 19.9 -0.4 16 219-234 29-45 (45)
223 1wew_A DNA-binding family prot 20.4 79 0.0027 19.3 2.7 33 45-78 14-48 (78)
224 2xjy_A Rhombotin-2; oncoprotei 20.3 54 0.0019 21.9 2.1 35 47-82 94-128 (131)
225 2yww_A Aspartate carbamoyltran 20.3 28 0.00097 24.5 0.6 31 135-166 106-143 (149)
226 1vd4_A Transcription initiatio 20.3 37 0.0013 19.2 1.1 7 209-215 41-47 (62)
227 2d8x_A Protein pinch; LIM doma 20.2 54 0.0018 19.1 1.9 34 47-82 31-64 (70)
228 3mpx_A FYVE, rhogef and PH dom 20.2 22 0.00075 29.6 0.0 37 47-83 375-412 (434)
229 2g2k_A EIF-5, eukaryotic trans 20.2 54 0.0019 23.7 2.1 27 207-233 96-128 (170)
No 1
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.75 E-value=1.2e-18 Score=118.21 Aligned_cols=86 Identities=23% Similarity=0.506 Sum_probs=75.1
Q ss_pred CCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCC-ccccCCCCCCCCC--CCHHHHhccCCHHHHHHHH
Q 048114 45 ETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENI-TSINCPVADCKGV--LEPEYCRDILPEDVFNRWG 121 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~-~~i~CP~~~C~~~--l~~~~i~~~l~~~~~~~~~ 121 (234)
...++|+||++++...+++.+.+|||.||.+||++|+..+|.+|. .+++||...|... ++++.++.+++++++++|+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky~ 82 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYK 82 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCCHHHHHHHH
Confidence 347889999999876666777689999999999999999998874 6899998889999 9999999999999999999
Q ss_pred HHHHHHHHh
Q 048114 122 NALCEAVIL 130 (234)
Q Consensus 122 ~~~~~~~~~ 130 (234)
+++.+.++.
T Consensus 83 ~~~~~~~v~ 91 (94)
T 1wim_A 83 KLQFERSGP 91 (94)
T ss_dssp HHHHHSSCS
T ss_pred HHHHHhhhc
Confidence 987765543
No 2
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.37 E-value=9.4e-14 Score=84.79 Aligned_cols=31 Identities=32% Similarity=0.862 Sum_probs=29.0
Q ss_pred cCCcccCCCCCceeeeccCCCceEec---CCCCC
Q 048114 204 KENWRRCPNCKIFVEKKEGCRYMRCS---SNPQL 234 (234)
Q Consensus 204 ~~~~k~CP~C~~~i~k~~GCnhm~C~---C~~~F 234 (234)
..++|+||+|+++|||++|||||+|+ |+++|
T Consensus 3 ~~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~F 36 (60)
T 1wd2_A 3 AANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEF 36 (60)
T ss_dssp CCCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCC
T ss_pred cccceECcCCCCeeEeCCCCCcEEECCCCcCCEE
Confidence 46789999999999999999999996 99998
No 3
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.33 E-value=2.6e-14 Score=94.55 Aligned_cols=72 Identities=29% Similarity=0.710 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHh-CCCeecCCCCCCCCceecCCCCccCcccCccccccccccCCCCC---CCCCChhhHHHhhhc
Q 048114 114 EDVFNRWGNALCEAVIL-GAQKFYCPFKDCSALLIDDGGEAIRESVCPDCNRMFCAQCKVPW---HAGIRCAEFQKLHKD 189 (234)
Q Consensus 114 ~~~~~~~~~~~~~~~~~-~~~~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~---H~~~~C~~~~~~~~~ 189 (234)
++++++|++++.+.++. ++..+||| +|+++++.+.. ...+.|+.|+..||+.|+.+| |.+.+|+++++|..+
T Consensus 4 ~~~~e~y~~~l~e~~v~~~~~~~wCP--~C~~~~~~~~~--~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w~~~ 79 (86)
T 2ct7_A 4 GSSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYERE--QLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRM 79 (86)
T ss_dssp CCCCCSSSSCCCCSCCCSCCCEECCS--SSCCCEECCCS--CSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEeECc--CCCchheecCC--CCceEeCCCCCccccccCCchhhcCCCCChHHHHHHHHh
Confidence 34567777777776664 45567999 99998887643 455999999999999999999 999999999998764
No 4
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.29 E-value=2.3e-14 Score=93.32 Aligned_cols=69 Identities=28% Similarity=0.617 Sum_probs=59.0
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCCeecCCCCCCCCceecCCCCccCcccCc-----cccccccccCCCCCCCCCChhh
Q 048114 111 ILPEDVFNRWGNALCEAVILGAQKFYCPFKDCSALLIDDGGEAIRESVCP-----DCNRMFCAQCKVPWHAGIRCAE 182 (234)
Q Consensus 111 ~l~~~~~~~~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~C~-----~C~~~~C~~C~~~~H~~~~C~~ 182 (234)
+|+++++++|++++.+.++.....+|||+|+|++++..+. ....+.|+ .|+..||+.|+..||. .+|..
T Consensus 2 ~l~~~~~~rY~~~~~e~~v~~~~~~~CP~p~C~~~v~~~~--~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 2 HMGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEP--DQRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp CCCCCCCCSCCCSSSCCSSCCCSSCCCCSSSCCCCCCCCS--CTTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSS
T ss_pred CCCHHHHHHHHHHHHHHHhhhCCcEECCCCCCCcccEECC--CCCcCCCCCCCCCCCCCeeccccCccccC-Ccccc
Confidence 5677888899988888777766689999999999988765 34559998 9999999999999999 99975
No 5
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.17 E-value=1.5e-11 Score=92.09 Aligned_cols=132 Identities=23% Similarity=0.487 Sum_probs=81.7
Q ss_pred hcCCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHHHhccCCHHHHHHHHH
Q 048114 43 RIETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEYCRDILPEDVFNRWGN 122 (234)
Q Consensus 43 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~~~~ 122 (234)
.++..+.|+||++.+. +++. ++|||+||..|+.+|+... ...|| .|...+....+. ....++
T Consensus 14 ~~~~~~~C~IC~~~~~--~pv~-~~CgH~fC~~Ci~~~~~~~------~~~CP--~Cr~~~~~~~~~---~~~~~~---- 75 (170)
T 3hcs_A 14 PLESKYECPICLMALR--EAVQ-TPCGHRFCKACIIKSIRDA------GHKCP--VDNEILLENQLF---PDNFAK---- 75 (170)
T ss_dssp CCCGGGBCTTTCSBCS--SEEE-CTTSCEEEHHHHHHHHHHH------CSBCT--TTCCBCCGGGCE---ECHHHH----
T ss_pred CCCCCCCCCCCChhhc--CcEE-CCCCCHHHHHHHHHHHHhC------CCCCC--CCccCcchhhhh---hhHHHH----
Confidence 4566889999999885 5555 5999999999999999754 23899 898888775432 211111
Q ss_pred HHHHHHHhCCCeecCCCCCCCCceecCCCC------ccCcccCccccccccccCCCCCCCCCChhhHHHhhhccCChHHH
Q 048114 123 ALCEAVILGAQKFYCPFKDCSALLIDDGGE------AIRESVCPDCNRMFCAQCKVPWHAGIRCAEFQKLHKDEREPEDI 196 (234)
Q Consensus 123 ~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~------~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~~~~~~~~~~~~ 196 (234)
..+. .-.++||+.+|...+...... ....+.|+.|+..+- .....+|....|
T Consensus 76 ----~~i~-~l~v~C~n~GC~~~~~~~~l~~H~~~C~~~~v~C~~C~~~~~-r~~l~~H~~~~C---------------- 133 (170)
T 3hcs_A 76 ----REIL-SLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPFQ-KFHINIHILKDC---------------- 133 (170)
T ss_dssp ----HHHH-TSEEECCSTTCCCEEEGGGHHHHHTTCTTSEEECTTTCCEEE-GGGHHHHHHHTC----------------
T ss_pred ----HHHh-hcccCCCCCCCCceecHhHHHHHHhcCCceeeECCCCChHHH-HHHHHHHhhhhC----------------
Confidence 1111 245799999999887765321 112345555554431 111112222222
Q ss_pred HHHHHHhcCCcccCCCCCceeeecc
Q 048114 197 MLMTLAQKENWRRCPNCKIFVEKKE 221 (234)
Q Consensus 197 ~l~~~~~~~~~k~CP~C~~~i~k~~ 221 (234)
......||.|+..+....
T Consensus 134 -------~~r~~~C~~C~~~~~~~~ 151 (170)
T 3hcs_A 134 -------PRRQVSCDNCAASMAFED 151 (170)
T ss_dssp -------TTCEEECTTTCCEEEGGG
T ss_pred -------CCCCeECCCCCCccCHHH
Confidence 245578999998887643
No 6
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.10 E-value=1.4e-12 Score=93.69 Aligned_cols=118 Identities=24% Similarity=0.586 Sum_probs=78.6
Q ss_pred CCcccccccccCCCC----CCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHHHhccCCHHHHHHH
Q 048114 45 ETSFICDICVEPKST----DESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEYCRDILPEDVFNRW 120 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~----~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~~ 120 (234)
...++|+||++.+.. .+.+..++|||.||.+|+.+|+.. ...|| .|+..+....+..+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-------~~~CP--~Cr~~~~~~~l~~l~-------- 67 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-------ANTCP--TCRKKINHKRYHPIY-------- 67 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-------CSBCT--TTCCBCTTTCEEECB--------
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-------CCCCC--CCCCcCccccccccc--------
Confidence 347789999998852 122355699999999999999852 23899 899988776654431
Q ss_pred HHHHHHHHHhCCCeecCCCCCCCCceecCCCCccCcccCccccccccccCCCCCCCCCChhhHHHhhhccCChHHHHHHH
Q 048114 121 GNALCEAVILGAQKFYCPFKDCSALLIDDGGEAIRESVCPDCNRMFCAQCKVPWHAGIRCAEFQKLHKDEREPEDIMLMT 200 (234)
Q Consensus 121 ~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~l~~ 200 (234)
...+...|+ -|...+..... .........||..||..|...|..
T Consensus 68 ---------i~~~~~~C~--iC~~~~~~~~~-~~~~~~~~~CgH~fc~~Ci~~~~~------------------------ 111 (133)
T 4ap4_A 68 ---------IGSGTVSCP--ICMDGYSEIVQ-NGRLIVSTECGHVFCSQCLRDSLK------------------------ 111 (133)
T ss_dssp ---------CSSSSCBCT--TTCCBHHHHHH-TTCCEEEETTSBEEEHHHHHHHHH------------------------
T ss_pred ---------cCCCCCCCC--CCCCccccccc-cCcceEeCCCCChhhHHHHHHHHH------------------------
Confidence 123445788 77765543210 111134457999999988654310
Q ss_pred HHhcCCcccCCCCCceeeec
Q 048114 201 LAQKENWRRCPNCKIFVEKK 220 (234)
Q Consensus 201 ~~~~~~~k~CP~C~~~i~k~ 220 (234)
..+.||.|+..+.++
T Consensus 112 -----~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 112 -----NANTCPTCRKKINHK 126 (133)
T ss_dssp -----HCSBCTTTCCBCCGG
T ss_pred -----cCCCCCCCCCcCChh
Confidence 126999999998865
No 7
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=3.2e-10 Score=72.40 Aligned_cols=56 Identities=23% Similarity=0.591 Sum_probs=44.2
Q ss_pred cCCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHHHhc
Q 048114 44 IETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEYCRD 110 (234)
Q Consensus 44 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ 110 (234)
++..++|+||++.+. +++.+.+|+|.||..|+.+|+.. ...|| .|+..+...++..
T Consensus 12 ~~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~-------~~~CP--~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 12 LTPYILCSICKGYLI--DATTITECLHTFCKSCIVRHFYY-------SNRCP--KCNIVVHQTQPLS 67 (72)
T ss_dssp CCGGGSCTTTSSCCS--SCEECSSSCCEECHHHHHHHHHH-------CSSCT--TTCCCCCSSCSCC
T ss_pred cCCCCCCCCCChHHH--CcCEECCCCCHHHHHHHHHHHHc-------CCcCC--CcCcccCcccccc
Confidence 355788999999886 55665699999999999999964 35899 8998887655433
No 8
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=4.5e-10 Score=74.51 Aligned_cols=61 Identities=25% Similarity=0.629 Sum_probs=46.7
Q ss_pred cCCcccccccccCCCCCCc-eeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHHHhc
Q 048114 44 IETSFICDICVEPKSTDES-FSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEYCRD 110 (234)
Q Consensus 44 ~~~~~~C~iC~~~~~~~~~-~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ 110 (234)
++..++|+||++.+...+. +.+++|||.||..|+.+|+... .....|| .|+..+....+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~----~~~~~CP--~Cr~~~~~~~i~~ 73 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS----INGVRCP--FCSKITRITSLTQ 73 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC----SSCBCCT--TTCCCBCCSSTTT
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC----CCCcCCC--CCCCcccchhHHH
Confidence 3557889999999864332 4556999999999999999743 2467999 8998877665544
No 9
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=5.1e-10 Score=73.69 Aligned_cols=59 Identities=27% Similarity=0.705 Sum_probs=46.4
Q ss_pred cCCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHHH
Q 048114 44 IETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEYC 108 (234)
Q Consensus 44 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i 108 (234)
+...++|+||++.+. +++. ++|||.||..|+..|+..+...+ ....|| .|+..+..+.+
T Consensus 16 ~~~~~~C~IC~~~~~--~p~~-~~CgH~fC~~Ci~~~~~~~~~~~-~~~~CP--~Cr~~~~~~~~ 74 (85)
T 2ecv_A 16 VKEEVTCPICLELLT--QPLS-LDCGHSFCQACLTANHKKSMLDK-GESSCP--VCRISYQPENI 74 (85)
T ss_dssp CCCCCCCTTTCSCCS--SCBC-CSSSCCBCTTHHHHHHHHHHHTT-SCCCCT--TTCCSSCSSSC
T ss_pred ccCCCCCCCCCcccC--Ccee-CCCCCHHHHHHHHHHHHHhhcCC-CCCcCC--CCCCccCHHhc
Confidence 456789999999885 4444 49999999999999998765544 367999 89988876543
No 10
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.90 E-value=9e-10 Score=77.06 Aligned_cols=83 Identities=22% Similarity=0.502 Sum_probs=58.1
Q ss_pred CCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHHHhccCCHHHHHHHHHHH
Q 048114 45 ETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEYCRDILPEDVFNRWGNAL 124 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~~~~~~ 124 (234)
...+.|+||++.+. +++. ++|||.||..|+.+|+... ...|| .|...+....+...+ ..+ .+.+
T Consensus 21 ~~~~~C~IC~~~~~--~p~~-~~CgH~fC~~Ci~~~~~~~------~~~CP--~Cr~~~~~~~~~~~~-~~l----~~~i 84 (116)
T 1rmd_A 21 VKSISCQICEHILA--DPVE-TSCKHLFCRICILRCLKVM------GSYCP--SCRYPCFPTDLESPV-KSF----LNIL 84 (116)
T ss_dssp HHHTBCTTTCSBCS--SEEE-CTTSCEEEHHHHHHHHHHT------CSBCT--TTCCBCCGGGCBCCC-HHH----HHHH
T ss_pred cCCCCCCCCCcHhc--CcEE-cCCCCcccHHHHHHHHhHC------cCcCC--CCCCCCCHhhccccH-HHH----HHHH
Confidence 34678999999885 5555 5999999999999999742 35799 899998876654331 111 1111
Q ss_pred HHHHHhCCCeecCCCCCCCCceecC
Q 048114 125 CEAVILGAQKFYCPFKDCSALLIDD 149 (234)
Q Consensus 125 ~~~~~~~~~~~~Cp~~~C~~~~~~~ 149 (234)
..-.++||+.+|...+...
T Consensus 85 ------~~l~v~C~~~gC~~~~~~~ 103 (116)
T 1rmd_A 85 ------NSLMVKCPAQDCNEEVSLE 103 (116)
T ss_dssp ------HHCEEECCSTTCCCEEEHH
T ss_pred ------HHhcCCCCCCCCcchhhHh
Confidence 1235689988898776543
No 11
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=3.4e-10 Score=72.42 Aligned_cols=55 Identities=25% Similarity=0.710 Sum_probs=42.7
Q ss_pred cCCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHH
Q 048114 44 IETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEY 107 (234)
Q Consensus 44 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~ 107 (234)
++..++|+||++.+. +++.+ +|||.||..|+..|+. .......|| .|+..+..++
T Consensus 17 ~~~~~~C~IC~~~~~--~~~~~-~CgH~fC~~Ci~~~~~----~~~~~~~CP--~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDILQ--KPVTI-DCGHNFCLKCITQIGE----TSCGFFKCP--LCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBCS--SEEEC-TTCCEEEHHHHHHHCS----SSCSCCCCS--SSCCCCCCCC
T ss_pred CccCCEeccCCcccC--CeEEc-CCCChhhHHHHHHHHH----cCCCCCCCC--CCCCcCCccc
Confidence 456789999999885 55554 9999999999999985 223467899 8988876543
No 12
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.89 E-value=7.3e-10 Score=72.92 Aligned_cols=60 Identities=28% Similarity=0.554 Sum_probs=45.7
Q ss_pred cCCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHHHh
Q 048114 44 IETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEYCR 109 (234)
Q Consensus 44 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~ 109 (234)
++..++|+||++.+. +++ +++|+|.||..|+..|+..... +.....|| .|+..+..+.+.
T Consensus 16 ~~~~~~C~IC~~~~~--~p~-~~~CgH~fC~~Ci~~~~~~~~~-~~~~~~CP--~Cr~~~~~~~~~ 75 (85)
T 2ecw_A 16 IKEEVTCPICLELLK--EPV-SADCNHSFCRACITLNYESNRN-TDGKGNCP--VCRVPYPFGNLK 75 (85)
T ss_dssp CCTTTSCTTTCSCCS--SCE-ECTTSCCBCHHHHHHHHHHSBC-TTSCBCCT--TTCCCCCTTCCE
T ss_pred CccCCCCcCCChhhC--cce-eCCCCCHHHHHHHHHHHHhccC-CCCCCCCC--CCCCcCCHHhCC
Confidence 355788999999885 444 4599999999999999976532 22467999 899888765443
No 13
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.89 E-value=1.6e-10 Score=83.61 Aligned_cols=94 Identities=20% Similarity=0.430 Sum_probs=57.9
Q ss_pred hhcCCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHHHhccCCHHHHHHHH
Q 048114 42 ERIETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEYCRDILPEDVFNRWG 121 (234)
Q Consensus 42 ~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~~~ 121 (234)
+.++..++|+||++.+. +++. ++|||.||..|+..|+.. ....|| .|...+.......+++... .|.
T Consensus 26 ~~l~~~~~C~IC~~~~~--~pv~-~~CgH~FC~~Ci~~~~~~------~~~~CP--~Cr~~~~~~~~~~~l~~~~--~~~ 92 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLR--RPFQ-AQCGHRYCSFCLASILSS------GPQNCA--ACVHEGIYEEGISILESSS--AFP 92 (141)
T ss_dssp GGCCGGGBCTTTCSBCS--SEEE-CTTSCEEEHHHHHHHGGG------SCEECH--HHHHTTCCCTTTTEECGGG--CEE
T ss_pred ccCCcCcCCCCCChhhc--CcEE-CCCCCccCHHHHHHHHhc------CCCCCC--CCCCcccccccccccchhh--hcc
Confidence 45677899999999885 5555 499999999999999841 245899 7876554332222221110 000
Q ss_pred HHHHHHHHhCCCeecCCCCCCCCceecC
Q 048114 122 NALCEAVILGAQKFYCPFKDCSALLIDD 149 (234)
Q Consensus 122 ~~~~~~~~~~~~~~~Cp~~~C~~~~~~~ 149 (234)
....+..+. .-.++||+.+|...+...
T Consensus 93 d~~~~~~i~-~L~v~Cpn~GC~~~~~l~ 119 (141)
T 3knv_A 93 DNAARREVE-SLPAVCPSDGCTWKGTLK 119 (141)
T ss_dssp CHHHHHHHH-TSEEECCSTTCCCEEEHH
T ss_pred cHHHHHHHc-ccccccCCCCCCCEeEHH
Confidence 011111122 346799988898776543
No 14
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=1.9e-09 Score=66.76 Aligned_cols=45 Identities=27% Similarity=0.814 Sum_probs=35.9
Q ss_pred cCCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCC
Q 048114 44 IETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCP 95 (234)
Q Consensus 44 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP 95 (234)
++..++|+||++.+. +++.+ +|||.||..|+.+|+.. ......||
T Consensus 17 ~~~~~~C~IC~~~~~--~p~~~-~CgH~fC~~Ci~~~~~~----~~~~~~CP 61 (63)
T 2ysj_A 17 LQEEVICPICLDILQ--KPVTI-DCGHNFCLKCITQIGET----SCGFFKCP 61 (63)
T ss_dssp CCCCCBCTTTCSBCS--SCEEC-TTSSEECHHHHHHHHHH----CSSCCCCS
T ss_pred CccCCCCCcCCchhC--CeEEe-CCCCcchHHHHHHHHHc----CCCCCcCc
Confidence 466889999999886 55555 99999999999999974 22356888
No 15
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.87 E-value=2.8e-09 Score=74.78 Aligned_cols=85 Identities=24% Similarity=0.552 Sum_probs=59.4
Q ss_pred hcCCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHHHhccCCHHHHHHHHH
Q 048114 43 RIETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEYCRDILPEDVFNRWGN 122 (234)
Q Consensus 43 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~~~~ 122 (234)
.++..+.|+||++.+. +++. ++|||.||..|+..|+... ...|| .|+..+....+ .....+++
T Consensus 14 ~~~~~~~C~IC~~~~~--~p~~-~~CgH~fC~~Ci~~~~~~~------~~~CP--~Cr~~~~~~~~---~~~~~l~~--- 76 (118)
T 3hct_A 14 PLESKYECPICLMALR--EAVQ-TPCGHRFCKACIIKSIRDA------GHKCP--VDNEILLENQL---FPDNFAKR--- 76 (118)
T ss_dssp CCCGGGBCTTTCSBCS--SEEE-CTTSCEEEHHHHHHHHHHH------CSBCT--TTCCBCCGGGC---EECHHHHH---
T ss_pred CCCCCCCCCcCChhhc--CeEE-CCcCChhhHHHHHHHHhhC------CCCCC--CCCCCcCHHhc---ccCHHHHH---
Confidence 3466789999999885 5555 4999999999999999754 23899 89988876432 22222111
Q ss_pred HHHHHHHhCCCeecCCCCCCCCceecCC
Q 048114 123 ALCEAVILGAQKFYCPFKDCSALLIDDG 150 (234)
Q Consensus 123 ~~~~~~~~~~~~~~Cp~~~C~~~~~~~~ 150 (234)
.+. .-.++||+.+|...+....
T Consensus 77 -----~i~-~l~v~C~n~gC~~~~~~~~ 98 (118)
T 3hct_A 77 -----EIL-SLMVKCPNEGCLHKMELRH 98 (118)
T ss_dssp -----HHH-TSEEECSSTTCCCEEEGGG
T ss_pred -----HHc-cceeECCCCCCCCEEeeHH
Confidence 112 2457999999998777653
No 16
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.86 E-value=1.2e-09 Score=74.29 Aligned_cols=61 Identities=25% Similarity=0.579 Sum_probs=48.3
Q ss_pred hhhcCCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHHHhcc
Q 048114 41 EERIETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEYCRDI 111 (234)
Q Consensus 41 ~~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~ 111 (234)
...++..++|+||++.+. +++.+++|||.||..|+..|+... ...|| .|...+....+...
T Consensus 16 ~~~l~~~~~C~IC~~~~~--~p~~~~~CgH~FC~~Ci~~~~~~~------~~~CP--~Cr~~~~~~~l~~~ 76 (100)
T 3lrq_A 16 VESIAEVFRCFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQ------RAQCP--HCRAPLQLRELVNC 76 (100)
T ss_dssp HHHHHHHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHHHT------CSBCT--TTCCBCCGGGCEEC
T ss_pred cccCCCCCCCccCCcccc--CccccCCCCChhhHHHHHHHHHHC------cCCCC--CCCCcCCHHHhHhh
Confidence 344566889999999986 566647999999999999999743 26899 89999987766543
No 17
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=7.3e-10 Score=69.40 Aligned_cols=53 Identities=21% Similarity=0.619 Sum_probs=41.6
Q ss_pred cCCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHH
Q 048114 44 IETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEY 107 (234)
Q Consensus 44 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~ 107 (234)
++..++|+||++.+. +++. ++|||.||..|+.+|+. .....|| .|+..+..++
T Consensus 12 ~~~~~~C~IC~~~~~--~p~~-~~CgH~fC~~Ci~~~~~------~~~~~CP--~Cr~~~~~~~ 64 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLC--SPKQ-TECGHRFCESCMAALLS------SSSPKCT--ACQESIVKDK 64 (66)
T ss_dssp CCCCEECTTTCCEES--SCCC-CSSSCCCCHHHHHHHHT------TSSCCCT--TTCCCCCTTT
T ss_pred CCcCCCCCCCChHhc--CeeE-CCCCCHHHHHHHHHHHH------hCcCCCC--CCCcCCChhh
Confidence 355788999999885 4444 59999999999999985 1356899 8988877543
No 18
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.83 E-value=2.9e-09 Score=72.23 Aligned_cols=54 Identities=30% Similarity=0.697 Sum_probs=43.1
Q ss_pred cCCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHHH
Q 048114 44 IETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEYC 108 (234)
Q Consensus 44 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i 108 (234)
++..++|+||++.+. +++.+.+|||.||..|+..|+.. ...|| .|+..+....+
T Consensus 19 ~~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~-------~~~CP--~Cr~~~~~~~l 72 (99)
T 2y43_A 19 IDDLLRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSY-------KTQCP--TCCVTVTEPDL 72 (99)
T ss_dssp HHHHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHTT-------CCBCT--TTCCBCCGGGC
T ss_pred CCCCCCcccCChhhC--CcCEECCCCCHhhHHHHHHHHHC-------CCCCC--CCCCcCChhhC
Confidence 455788999999886 55555599999999999999962 35899 89998887543
No 19
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.83 E-value=1.7e-09 Score=70.05 Aligned_cols=67 Identities=15% Similarity=0.358 Sum_probs=48.6
Q ss_pred cCCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHHHh-ccCCHHHHHHHH
Q 048114 44 IETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEYCR-DILPEDVFNRWG 121 (234)
Q Consensus 44 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~-~~l~~~~~~~~~ 121 (234)
+...+.|+||++.+. +++.+ +|||+||..|+.+|+.. ....|| .|+..+....+. +..-.++++.|.
T Consensus 5 ~~~~~~C~IC~~~~~--~Pv~~-~CgH~fc~~Ci~~~~~~------~~~~CP--~C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 5 FPEYFRCPISLELMK--DPVIV-STGQTYERSSIQKWLDA------GHKTCP--KSQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp CSSSSSCTTTSCCCS--SEEEE-TTTEEEEHHHHHHHHTT------TCCBCT--TTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred CcccCCCCCcccccc--CCEEc-CCCCeecHHHHHHHHHH------CcCCCC--CCcCCCChhhCccCHHHHHHHHHHH
Confidence 355889999999885 66665 99999999999999952 256899 899888765443 333345555543
No 20
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.82 E-value=1.4e-10 Score=75.36 Aligned_cols=61 Identities=26% Similarity=0.510 Sum_probs=46.1
Q ss_pred cCCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHHHh
Q 048114 44 IETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEYCR 109 (234)
Q Consensus 44 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~ 109 (234)
++..++|+||++.+. +++. ++|||.||..|+.+|+............|| .|+..+....+.
T Consensus 9 ~~~~~~C~IC~~~~~--~p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP--~Cr~~~~~~~l~ 69 (79)
T 2egp_A 9 VQEEVTCPICLELLT--EPLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCP--VCGISYSFEHLQ 69 (79)
T ss_dssp CCCCCEETTTTEECS--SCCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCS--SSCCCCCSSGGG
T ss_pred cccCCCCcCCCcccC--CeeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCC--CCCCcCCHhhCC
Confidence 356788999999985 4444 499999999999999865433333478999 899888765543
No 21
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.80 E-value=1e-09 Score=73.45 Aligned_cols=50 Identities=28% Similarity=0.724 Sum_probs=40.2
Q ss_pred cCCcccccccccCCCCCCceeeCC-CCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCC
Q 048114 44 IETSFICDICVEPKSTDESFSIKG-CSHSYCTECMTKYVASKLQENITSINCPVADCKGVL 103 (234)
Q Consensus 44 ~~~~~~C~iC~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l 103 (234)
++..++|+||++.+. +++.+ + |||+||..|+..|+... ....|| .|...+
T Consensus 10 ~~~~~~C~IC~~~~~--~p~~~-~~CgH~fC~~Ci~~~~~~~-----~~~~CP--~Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMT--DAVVI-PCCGNSYCDECIRTALLES-----DEHTCP--TCHQND 60 (92)
T ss_dssp CCTTTEETTTTEECS--SCEEC-TTTCCEECHHHHHHHHHHC-----TTCCCT--TTCCSS
T ss_pred CCcCCCCCCCChhhc--CceEC-CCCCCHHHHHHHHHHHHhc-----CCCcCc--CCCCcC
Confidence 456889999999886 55655 7 99999999999998632 247899 888876
No 22
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.80 E-value=3.9e-09 Score=63.44 Aligned_cols=50 Identities=26% Similarity=0.499 Sum_probs=39.5
Q ss_pred CcccccccccCCCC-CCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCC
Q 048114 46 TSFICDICVEPKST-DESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLE 104 (234)
Q Consensus 46 ~~~~C~iC~~~~~~-~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 104 (234)
...+|+||++.+.. .+.+.+++|+|.||..|+.+|+... ..|| .|...++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP--~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-------YRCP--LCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-------CCCT--TSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-------CcCC--CCCCcCC
Confidence 36779999999843 3446667999999999999999743 6799 7887664
No 23
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.80 E-value=6e-09 Score=65.75 Aligned_cols=51 Identities=24% Similarity=0.576 Sum_probs=40.6
Q ss_pred CCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCC
Q 048114 45 ETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLE 104 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 104 (234)
+...+|+||++.+.....+..++|+|.||..|+..|+... ..|| .|...+.
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-------~~CP--~Cr~~~~ 62 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-------KKCP--ICRVDIE 62 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-------SBCT--TTCSBSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-------CCCc--CcCcccc
Confidence 4467899999998765566667999999999999999642 2599 8887665
No 24
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.79 E-value=3.3e-09 Score=73.59 Aligned_cols=74 Identities=24% Similarity=0.540 Sum_probs=53.8
Q ss_pred cCCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHHHhc-cCCHHHHHHHHH
Q 048114 44 IETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEYCRD-ILPEDVFNRWGN 122 (234)
Q Consensus 44 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~-~l~~~~~~~~~~ 122 (234)
+...++|+||++.+. +++. ++|||.||..|+..|+... .....|| .|...+....+.. ....++++.+.+
T Consensus 18 ~~~~~~C~IC~~~~~--~p~~-~~CgH~fC~~Ci~~~~~~~----~~~~~CP--~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 18 MQKILECPICLELIK--EPVS-TKCDHIFCKFCMLKLLNQK----KGPSQCP--LCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHHTSCSSSCCCCS--SCCB-CTTSCCCCSHHHHHHHHSS----SSSCCCT--TTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred ccCCCCCcccChhhc--CeEE-CCCCCHHHHHHHHHHHHhC----CCCCCCc--CCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 445778999999875 4444 5999999999999999632 2357899 8999888876654 333456666665
Q ss_pred HHHH
Q 048114 123 ALCE 126 (234)
Q Consensus 123 ~~~~ 126 (234)
.+..
T Consensus 89 ~~~~ 92 (112)
T 1jm7_A 89 IICA 92 (112)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 25
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.76 E-value=3e-09 Score=63.94 Aligned_cols=52 Identities=21% Similarity=0.621 Sum_probs=39.6
Q ss_pred cCCcccccccccCCCCCCceeeCC-CCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCC
Q 048114 44 IETSFICDICVEPKSTDESFSIKG-CSHSYCTECMTKYVASKLQENITSINCPVADCKGVLE 104 (234)
Q Consensus 44 ~~~~~~C~iC~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 104 (234)
++...+|+||++++...+.+..++ |+|.||.+|+.+|+.. ...|| .|+..+.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-------~~~CP--~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-------HSTCP--LCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-------CCSCS--SSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-------CCcCc--CCCCEeE
Confidence 355778999999997655454455 9999999999999842 34799 7877654
No 26
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.76 E-value=3.9e-09 Score=68.29 Aligned_cols=55 Identities=22% Similarity=0.558 Sum_probs=43.7
Q ss_pred CCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHHH
Q 048114 45 ETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEYC 108 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i 108 (234)
....+|+||++.+.....+..++|+|.||..|+.+|+.. ...|| .|+..+....+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-------~~~CP--~Cr~~~~~~~~ 67 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-------HDSCP--VCRKSLTGQNT 67 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-------TCSCT--TTCCCCCCSCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-------CCcCc--CcCCccCCccc
Confidence 457789999999976666666799999999999999852 24899 89888776543
No 27
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.73 E-value=4.9e-09 Score=67.71 Aligned_cols=55 Identities=22% Similarity=0.507 Sum_probs=40.6
Q ss_pred CCcccccccccCCCCCCceee-CCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHH
Q 048114 45 ETSFICDICVEPKSTDESFSI-KGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEY 107 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~~~~~~~-~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~ 107 (234)
+..++|+||++.+...+...+ ++|||.||..|+.+++.. ....|| .|...+....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~------~~~~CP--~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD------ENGLCP--ACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS------SCSBCT--TTCCBCSSCS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc------CCCCCC--CCCCccCCCc
Confidence 557889999998864433322 249999999999988742 356899 8988877543
No 28
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.72 E-value=1.4e-09 Score=69.02 Aligned_cols=57 Identities=19% Similarity=0.613 Sum_probs=43.3
Q ss_pred CCcccccccccCCCC----CCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHHHhc
Q 048114 45 ETSFICDICVEPKST----DESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEYCRD 110 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~----~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ 110 (234)
+...+|+||++.+.. .+.+..++|||.||..|+.+|+... ..|| .|...+....+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP--~Cr~~~~~~~~~~ 68 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-------NTCP--TCRKKINHKRYHP 68 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-------SBCT--TTCCBCCCCSCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-------CCCC--CCCCccChhheee
Confidence 457789999998742 2334567999999999999999632 4899 8998887665543
No 29
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.72 E-value=6.6e-09 Score=66.53 Aligned_cols=50 Identities=28% Similarity=0.724 Sum_probs=39.5
Q ss_pred cCCcccccccccCCCCCCceeeCC-CCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCC
Q 048114 44 IETSFICDICVEPKSTDESFSIKG-CSHSYCTECMTKYVASKLQENITSINCPVADCKGVL 103 (234)
Q Consensus 44 ~~~~~~C~iC~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l 103 (234)
+...++|+||++.+. +++.+ + |||.||..|+..|+... ....|| .|+..+
T Consensus 12 ~~~~~~C~IC~~~~~--~p~~~-~~CgH~fC~~Ci~~~~~~~-----~~~~CP--~Cr~~~ 62 (74)
T 2yur_A 12 IPDELLCLICKDIMT--DAVVI-PCCGNSYCDECIRTALLES-----DEHTCP--TCHQND 62 (74)
T ss_dssp SCGGGSCSSSCCCCT--TCEEC-SSSCCEECTTHHHHHHHHS-----SSSCCS--SSCCSS
T ss_pred CCCCCCCcCCChHHh--CCeEc-CCCCCHHHHHHHHHHHHhc-----CCCcCC--CCCCcC
Confidence 355788999999886 55655 6 99999999999999742 246899 888753
No 30
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=3.9e-09 Score=67.06 Aligned_cols=54 Identities=20% Similarity=0.499 Sum_probs=43.3
Q ss_pred CCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHHHhc
Q 048114 45 ETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEYCRD 110 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ 110 (234)
...++|+||++.+. +.+.+ +|+|.||..|+..|+.. ...|| .|+..+....+..
T Consensus 13 ~~~~~C~IC~~~~~--~~~~~-~CgH~fC~~Ci~~~~~~-------~~~CP--~Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 13 LTVPECAICLQTCV--HPVSL-PCKHVFCYLCVKGASWL-------GKRCA--LCRQEIPEDFLDS 66 (71)
T ss_dssp SSCCBCSSSSSBCS--SEEEE-TTTEEEEHHHHHHCTTC-------SSBCS--SSCCBCCHHHHSC
T ss_pred CCCCCCccCCcccC--CCEEc-cCCCHHHHHHHHHHHHC-------CCcCc--CcCchhCHhhccC
Confidence 44678999999875 55555 89999999999998842 25899 8999999877654
No 31
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=1.1e-08 Score=65.45 Aligned_cols=51 Identities=22% Similarity=0.622 Sum_probs=40.7
Q ss_pred CCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCC
Q 048114 45 ETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLE 104 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 104 (234)
+...+|+||++.+.....+..++|+|.||..|+.+|+... ..|| .|...+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-------~~CP--~Cr~~~~ 63 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-------KVCP--LCNMPVL 63 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-------SBCT--TTCCBCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-------CcCC--CcCcccc
Confidence 4467899999999766656566999999999999999642 2799 8887654
No 32
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.69 E-value=1.9e-09 Score=66.88 Aligned_cols=55 Identities=20% Similarity=0.632 Sum_probs=42.2
Q ss_pred cccccccccCCCC----CCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHHHhc
Q 048114 47 SFICDICVEPKST----DESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEYCRD 110 (234)
Q Consensus 47 ~~~C~iC~~~~~~----~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ 110 (234)
..+|+||++.+.. .+.+.+++|||.||.+|+.+|+.. ...|| .|...+...++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-------~~~CP--~Cr~~~~~~~~~~ 61 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-------ANTCP--TCRKKINHKRYHP 61 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-------CSBCT--TTCCBCTTTCEEE
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-------CCCCC--CCCccCCccceee
Confidence 5689999998742 133355699999999999999964 34899 8998887765543
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.68 E-value=5.8e-09 Score=64.99 Aligned_cols=56 Identities=21% Similarity=0.501 Sum_probs=41.6
Q ss_pred ccccccccc-CCCCCC-ceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHHHhc
Q 048114 47 SFICDICVE-PKSTDE-SFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEYCRD 110 (234)
Q Consensus 47 ~~~C~iC~~-~~~~~~-~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ 110 (234)
.++|+||++ .+.... .+.+++|||.||..|+.+++.. ....|| .|+..+....++.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~------~~~~CP--~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR------GAGNCP--ECGTPLRKSNFRV 60 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT------TSSSCT--TTCCCCSSCCCEE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc------CCCcCC--CCCCcccccccee
Confidence 577999999 554222 2244699999999999999852 246899 8999888766554
No 34
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=1.7e-08 Score=65.79 Aligned_cols=48 Identities=23% Similarity=0.577 Sum_probs=39.4
Q ss_pred CCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCC
Q 048114 45 ETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLE 104 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 104 (234)
+..++|+||++.+. +++ +++|||.||..|+..|+.. ...|| .|...+.
T Consensus 13 ~~~~~C~IC~~~~~--~p~-~~~CgH~fC~~Ci~~~~~~-------~~~CP--~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQ--NPV-VTKCRHYFCESCALEHFRA-------TPRCY--ICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCC--SEE-ECTTSCEEEHHHHHHHHHH-------CSBCS--SSCCBCC
T ss_pred CCCCCCcCCCchhc--Cee-EccCCCHhHHHHHHHHHHC-------CCcCC--CcCcccc
Confidence 45788999999885 445 4699999999999999963 45899 8988876
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=1e-08 Score=62.27 Aligned_cols=45 Identities=24% Similarity=0.721 Sum_probs=34.3
Q ss_pred cCCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCC
Q 048114 44 IETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCP 95 (234)
Q Consensus 44 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP 95 (234)
++..++|+||++.+. +++. ++|||.||..|+.+|+.. ......||
T Consensus 12 ~~~~~~C~IC~~~~~--~p~~-~~CgH~fC~~Ci~~~~~~----~~~~~~CP 56 (58)
T 2ecj_A 12 LQVEASCSVCLEYLK--EPVI-IECGHNFCKACITRWWED----LERDFPCP 56 (58)
T ss_dssp SCCCCBCSSSCCBCS--SCCC-CSSCCCCCHHHHHHHTTS----SCCSCCCS
T ss_pred cccCCCCccCCcccC--ccEe-CCCCCccCHHHHHHHHHh----cCCCCCCC
Confidence 355788999999986 4444 599999999999999752 12356788
No 36
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=1.1e-08 Score=64.49 Aligned_cols=51 Identities=22% Similarity=0.709 Sum_probs=39.5
Q ss_pred CCcccccccccCCCC----CCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCC
Q 048114 45 ETSFICDICVEPKST----DESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLE 104 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~----~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 104 (234)
+...+|+||++.+.. .+.+.+++|||.||..|+..|+.. ...|| .|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-------~~~CP--~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-------ANTCP--TCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-------CSSCT--TTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-------CCCCC--CCCCccC
Confidence 457889999998742 233356799999999999999964 34799 8887765
No 37
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=1.9e-08 Score=67.44 Aligned_cols=60 Identities=20% Similarity=0.475 Sum_probs=45.9
Q ss_pred CCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCC-CCHHH
Q 048114 45 ETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGV-LEPEY 107 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~-l~~~~ 107 (234)
...+.|+||++.+. +++.+..|||+||+.|+..|+...-. +.....||..+|... +...+
T Consensus 5 ~~~~~CPI~~~~~~--dPV~~~~cGh~f~r~cI~~~l~~~~~-~~~~~~CP~tgc~~~~l~~~~ 65 (94)
T 2yu4_A 5 SSGFTCPITKEEMK--KPVKNKVCGHTYEEDAIVRMIESRQK-RKKKAYCPQIGCSHTDIRKSD 65 (94)
T ss_dssp SSCCBCTTTCSBCS--SEEEESSSCCEEEHHHHHHHHHHHHT-TTCCBCCCSTTCCCCCBCGGG
T ss_pred CcEeECcCcCchhc--CCEEcCCCCCeecHHHHHHHHHHccC-cCCCCCCCcCcCcccccCHhh
Confidence 44788999999886 77776459999999999999976421 124678997779877 76544
No 38
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=1.1e-08 Score=65.62 Aligned_cols=52 Identities=19% Similarity=0.633 Sum_probs=41.4
Q ss_pred CCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCH
Q 048114 45 ETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEP 105 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 105 (234)
+...+|+||++++...+.+..++|+|.||..|+..|+... ..|| .|...+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-------~~CP--~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-------RTCP--ICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-------SSCT--TTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-------CcCc--CcCCcCCC
Confidence 3467899999999766666667999999999999998632 3799 88877653
No 39
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.64 E-value=1.9e-08 Score=67.13 Aligned_cols=52 Identities=21% Similarity=0.590 Sum_probs=41.4
Q ss_pred CCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCH
Q 048114 45 ETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEP 105 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 105 (234)
+...+|+||++.+...+.+..++|+|.||..|+..|+.. .-.|| .|...+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-------~~~CP--~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-------SGTCP--VCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-------TCBCT--TTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-------CCcCc--CcCccCCC
Confidence 457789999999976666666699999999999999852 23799 88877653
No 40
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.63 E-value=1.5e-09 Score=76.02 Aligned_cols=52 Identities=25% Similarity=0.707 Sum_probs=41.2
Q ss_pred hhcCCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHH
Q 048114 42 ERIETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPE 106 (234)
Q Consensus 42 ~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~ 106 (234)
..+...++|+||++.+. +++.+.+|||+||..|+..|+. ..|| .|...+...
T Consensus 17 ~~l~~~~~C~IC~~~~~--~pv~~~~CgH~fC~~Ci~~~~~---------~~CP--~Cr~~~~~~ 68 (117)
T 1jm7_B 17 DRLEKLLRCSRCTNILR--EPVCLGGCEHIFCSNCVSDCIG---------TGCP--VCYTPAWIQ 68 (117)
T ss_dssp HHHHHTTSCSSSCSCCS--SCBCCCSSSCCBCTTTGGGGTT---------TBCS--SSCCBCSCS
T ss_pred HhchhCCCCCCCChHhh--CccEeCCCCCHHHHHHHHHHhc---------CCCc--CCCCcCccc
Confidence 34566889999999885 5555449999999999998874 6799 898887543
No 41
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.63 E-value=1.2e-08 Score=70.30 Aligned_cols=51 Identities=25% Similarity=0.704 Sum_probs=41.6
Q ss_pred cCCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCH
Q 048114 44 IETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEP 105 (234)
Q Consensus 44 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 105 (234)
++..++|+||++.+. +++.+.+|||.||..|+..|+.. ...|| .|...+..
T Consensus 12 ~~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~-------~~~CP--~Cr~~~~~ 62 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLET-------SKYCP--ICDVQVHK 62 (108)
T ss_dssp HGGGTBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHTS-------CSBCT--TTCCBSCS
T ss_pred cCCcCCCccCChHHh--CcCEeCCCCChhhHHHHHHHHHh-------CCcCc--CCCccccc
Confidence 456888999999886 66666699999999999999853 26899 89887764
No 42
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.58 E-value=2e-08 Score=70.96 Aligned_cols=52 Identities=25% Similarity=0.676 Sum_probs=41.6
Q ss_pred hcCCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCH
Q 048114 43 RIETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEP 105 (234)
Q Consensus 43 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 105 (234)
.++..++|+||++.+. +++.+ +|||.||..|+..|+.. ....|| .|+..+..
T Consensus 48 ~~~~~~~C~IC~~~~~--~p~~~-~CgH~fC~~Ci~~~~~~------~~~~CP--~Cr~~~~~ 99 (124)
T 3fl2_A 48 KVEETFQCICCQELVF--RPITT-VCQHNVCKDCLDRSFRA------QVFSCP--ACRYDLGR 99 (124)
T ss_dssp HHHHHTBCTTTSSBCS--SEEEC-TTSCEEEHHHHHHHHHT------TCCBCT--TTCCBCCT
T ss_pred hCccCCCCCcCChHHc--CcEEe-eCCCcccHHHHHHHHhH------CcCCCC--CCCccCCC
Confidence 3455789999999886 55554 99999999999999961 246899 89888765
No 43
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.55 E-value=1.7e-07 Score=61.56 Aligned_cols=52 Identities=8% Similarity=0.023 Sum_probs=42.4
Q ss_pred cCCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHH
Q 048114 44 IETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEY 107 (234)
Q Consensus 44 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~ 107 (234)
+...+.|+||++.+. +++.+ +|||+||+.|+..|+.. ...|| .|+..+....
T Consensus 11 ~p~~~~CpI~~~~m~--dPV~~-~cGhtf~r~~I~~~l~~-------~~~cP--~~~~~l~~~~ 62 (85)
T 2kr4_A 11 APDEFRDPLMDTLMT--DPVRL-PSGTVMDRSIILRHLLN-------SPTDP--FNRQMLTESM 62 (85)
T ss_dssp CCTTTBCTTTCSBCS--SEEEC-TTSCEEEHHHHHHHHHH-------CSBCT--TTCCBCCGGG
T ss_pred CchheECcccCchhc--CCeEC-CCCCEECHHHHHHHHhc-------CCCCC--CCcCCCChHh
Confidence 355899999999886 66665 89999999999999973 25799 8888888653
No 44
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.54 E-value=5e-08 Score=61.21 Aligned_cols=48 Identities=31% Similarity=0.708 Sum_probs=38.1
Q ss_pred CcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCC
Q 048114 46 TSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLE 104 (234)
Q Consensus 46 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 104 (234)
...+|+||++.+. +....++|||.||..|+.+|+.. ...|| .|+..+.
T Consensus 4 ~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~-------~~~CP--~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQ-------NPTCP--LCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHH-------SCSTT--TTCCCCC
T ss_pred CCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhC-------cCcCc--CCChhhH
Confidence 4667999999875 44456799999999999999853 24799 8887765
No 45
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.53 E-value=2.4e-08 Score=71.96 Aligned_cols=49 Identities=31% Similarity=0.855 Sum_probs=38.6
Q ss_pred cCCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCC
Q 048114 44 IETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLE 104 (234)
Q Consensus 44 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 104 (234)
++..++|+||++.+. +++.+ +|||.||..|+..|+.. ...|| .|...+.
T Consensus 50 ~~~~~~C~iC~~~~~--~~~~~-~CgH~fc~~Ci~~~~~~-------~~~CP--~Cr~~~~ 98 (138)
T 4ayc_A 50 LENELQCIICSEYFI--EAVTL-NCAHSFCSYCINEWMKR-------KIECP--ICRKDIK 98 (138)
T ss_dssp HHHHSBCTTTCSBCS--SEEEE-TTSCEEEHHHHHHHTTT-------CSBCT--TTCCBCC
T ss_pred ccccCCCcccCcccC--CceEC-CCCCCccHHHHHHHHHc-------CCcCC--CCCCcCC
Confidence 345678999999885 55554 99999999999999742 34799 8887765
No 46
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.51 E-value=9.9e-08 Score=64.36 Aligned_cols=51 Identities=12% Similarity=0.069 Sum_probs=41.7
Q ss_pred cCCcccccccccCCCCCCceeeCCCC-ChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHH
Q 048114 44 IETSFICDICVEPKSTDESFSIKGCS-HSYCTECMTKYVASKLQENITSINCPVADCKGVLEPE 106 (234)
Q Consensus 44 ~~~~~~C~iC~~~~~~~~~~~~~~C~-H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~ 106 (234)
+...+.|+||++.+. +++.+ +|| |+||+.|+..|+.. ...|| .|+..+...
T Consensus 19 ~p~~~~CpI~~~~m~--dPV~~-~cG~htf~r~cI~~~l~~-------~~~cP--~~~~~l~~~ 70 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMC--DPVVL-PSSRVTVDRSTIARHLLS-------DQTDP--FNRSPLTMD 70 (98)
T ss_dssp CCTTTBCTTTCSBCS--SEEEC-TTTCCEEEHHHHHHHTTT-------SCBCT--TTCSBCCTT
T ss_pred CcHhcCCcCcccccc--CCeEC-CCCCeEECHHHHHHHHHh-------CCCCC--CCCCCCChh
Confidence 456899999999885 66665 999 99999999999963 24799 888888764
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.48 E-value=7e-08 Score=70.39 Aligned_cols=52 Identities=27% Similarity=0.734 Sum_probs=41.9
Q ss_pred cCCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHH
Q 048114 44 IETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPE 106 (234)
Q Consensus 44 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~ 106 (234)
+...+.|+||++.+. +++. ++|||.||..|+..|+.. ....|| .|...+...
T Consensus 75 l~~~~~C~IC~~~~~--~pv~-~~CgH~fC~~Ci~~~~~~------~~~~CP--~Cr~~~~~~ 126 (150)
T 1z6u_A 75 LEQSFMCVCCQELVY--QPVT-TECFHNVCKDCLQRSFKA------QVFSCP--ACRHDLGQN 126 (150)
T ss_dssp HHHHTBCTTTSSBCS--SEEE-CTTSCEEEHHHHHHHHHT------TCCBCT--TTCCBCCTT
T ss_pred CccCCEeecCChhhc--CCEE-cCCCCchhHHHHHHHHHh------CCCcCC--CCCccCCCC
Confidence 345689999999885 5555 599999999999999963 246899 898888765
No 48
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.47 E-value=1.4e-07 Score=65.51 Aligned_cols=54 Identities=24% Similarity=0.524 Sum_probs=39.7
Q ss_pred cccccccccCCCCCC---------------ceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCC
Q 048114 47 SFICDICVEPKSTDE---------------SFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLE 104 (234)
Q Consensus 47 ~~~C~iC~~~~~~~~---------------~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 104 (234)
..+|+||++++.... .+.+++|+|.||..||..|+... .......|| .|...+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~--~~~~~~~CP--~CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNG--NKDGSLQCP--SCKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHT--CCSSCCBCT--TTCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcc--cCCCCCcCC--CCCCccC
Confidence 468999999985322 23367999999999999999532 113457899 8887765
No 49
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.44 E-value=5.1e-08 Score=76.40 Aligned_cols=59 Identities=20% Similarity=0.468 Sum_probs=47.3
Q ss_pred cCCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHHHh
Q 048114 44 IETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEYCR 109 (234)
Q Consensus 44 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~ 109 (234)
....+.||||++.+. +++....|||+||+.|+.+|+.. + ....||..+|...+...++.
T Consensus 178 ~~~el~CPIcl~~f~--DPVts~~CGHsFcR~cI~~~~~~----~-~~~~CPvtGCr~~l~~~dL~ 236 (267)
T 3htk_C 178 GKIELTCPITCKPYE--APLISRKCNHVFDRDGIQNYLQG----Y-TTRDCPQAACSQVVSMRDFV 236 (267)
T ss_dssp SBCCSBCTTTSSBCS--SEEEESSSCCEEEHHHHHHHSTT----C-SCEECSGGGCSCEECGGGEE
T ss_pred CceeeECcCccCccc--CCeeeCCCCCcccHHHHHHHHHh----C-CCCCCCcccccCcCchhhCC
Confidence 356889999999986 77776699999999999999962 2 35789976799988876543
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.40 E-value=4.3e-08 Score=59.09 Aligned_cols=46 Identities=20% Similarity=0.561 Sum_probs=35.6
Q ss_pred CCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCH
Q 048114 45 ETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEP 105 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 105 (234)
.+.++|+||++.+. +++ .++|||+||..|+.. ....|| .|+..+..
T Consensus 4 ~~~~~C~IC~~~~~--~p~-~l~CgH~fC~~Ci~~----------~~~~CP--~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAK--CPK-LLPCLHTLCSGCLEA----------SGMQCP--ICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCB--CCS-CSTTSCCSBTTTCSS----------SSSSCS--SCCSSSSC
T ss_pred ccCCCceEeCCccC--CeE-EcCCCCcccHHHHcc----------CCCCCC--cCCcEeec
Confidence 34778999999886 444 459999999999866 356899 88876653
No 51
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.38 E-value=1.3e-07 Score=70.24 Aligned_cols=50 Identities=26% Similarity=0.808 Sum_probs=40.8
Q ss_pred CCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCC
Q 048114 45 ETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLE 104 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 104 (234)
...+.|+||++.+. +++.+.+|||.||..|+..|+.. ....|| .|...+.
T Consensus 52 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~------~~~~CP--~Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDMLK--NTMTTKECLHRFCADCIITALRS------GNKECP--TCRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHT------TCCBCT--TTCCBCC
T ss_pred CCCCCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHh------CcCCCC--CCCCcCC
Confidence 44678999999986 56666699999999999999962 146799 8998875
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.36 E-value=2.3e-07 Score=62.82 Aligned_cols=51 Identities=8% Similarity=0.010 Sum_probs=41.9
Q ss_pred cCCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHH
Q 048114 44 IETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPE 106 (234)
Q Consensus 44 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~ 106 (234)
+...+.|+||++.+. +++.+ +|||+||+.|+..|+.. ...|| .|+..+...
T Consensus 26 ~p~~~~CpI~~~~m~--dPV~~-~cGhtf~r~~I~~~l~~-------~~~cP--~~~~~l~~~ 76 (100)
T 2kre_A 26 APDEFRDPLMDTLMT--DPVRL-PSGTIMDRSIILRHLLN-------SPTDP--FNRQTLTES 76 (100)
T ss_dssp CSTTTBCTTTCSBCS--SEEEE-TTTEEEEHHHHHHHTTS-------CSBCS--SSCCBCCTT
T ss_pred CcHhhCCcCccCccc--CCeEC-CCCCEEchHHHHHHHHc-------CCCCC--CCCCCCChh
Confidence 355899999999886 77766 79999999999999952 35799 888888764
No 53
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=2.2e-08 Score=63.25 Aligned_cols=47 Identities=30% Similarity=0.794 Sum_probs=36.6
Q ss_pred CCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCC
Q 048114 45 ETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLE 104 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 104 (234)
....+|+||++.+.. + +++|+|.||..|+..|+. ....|| .|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~---~-~~~CgH~fc~~Ci~~~~~-------~~~~CP--~Cr~~~~ 59 (70)
T 2ecn_A 13 TDEEECCICMDGRAD---L-ILPCAHSFCQKCIDKWSD-------RHRNCP--ICRLQMT 59 (70)
T ss_dssp CCCCCCSSSCCSCCS---E-EETTTEEECHHHHHHSSC-------CCSSCH--HHHHCTT
T ss_pred CCCCCCeeCCcCccC---c-ccCCCCcccHHHHHHHHH-------CcCcCC--CcCCccc
Confidence 457789999999863 4 459999999999999875 245788 7766554
No 54
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.33 E-value=1.8e-07 Score=65.08 Aligned_cols=48 Identities=29% Similarity=0.755 Sum_probs=39.0
Q ss_pred cccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCH
Q 048114 47 SFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEP 105 (234)
Q Consensus 47 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 105 (234)
.++|+||++.+. +++.+ +|||.||..|+..|+.. ....|| .|...+..
T Consensus 15 ~~~C~iC~~~~~--~p~~~-~CgH~fC~~Ci~~~~~~------~~~~CP--~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILV--EPVTL-PCNHTLCKPCFQSTVEK------ASLCCP--FCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCS--SCEEC-TTSCEECHHHHCCCCCT------TTSBCT--TTCCBCHH
T ss_pred CCCCccCCcccC--ceeEc-CCCCHHhHHHHHHHHhH------CcCCCC--CCCcccCc
Confidence 678999999885 55555 99999999999988742 247899 89998875
No 55
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=2.3e-07 Score=59.40 Aligned_cols=47 Identities=26% Similarity=0.666 Sum_probs=35.2
Q ss_pred hcCCcccccccccCCCCCCceeeCCCCCh-hhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCH
Q 048114 43 RIETSFICDICVEPKSTDESFSIKGCSHS-YCTECMTKYVASKLQENITSINCPVADCKGVLEP 105 (234)
Q Consensus 43 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 105 (234)
.++...+|+||++.+. ++ .+++|||. ||..|+.. ...|| .|+..+..
T Consensus 21 ~~~~~~~C~IC~~~~~--~~-~~~pCgH~~~C~~C~~~-----------~~~CP--~Cr~~i~~ 68 (75)
T 2ecg_A 21 RLQEEKLCKICMDRNI--AI-VFVPCGHLVTCKQCAEA-----------VDKCP--MCYTVITF 68 (75)
T ss_dssp HHHHHHSCSSSCSSCC--CB-CCSSSCCCCBCHHHHHH-----------CSBCT--TTCCBCCC
T ss_pred cCCCCCCCCcCCCCCC--CE-EEecCCCHHHHHHHhhC-----------CCCCc--cCCceecC
Confidence 3455778999999874 44 44699999 99999942 25799 88877653
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.24 E-value=2.2e-07 Score=59.35 Aligned_cols=46 Identities=26% Similarity=0.687 Sum_probs=35.7
Q ss_pred hcCCcccccccccCCCCCCceeeCCCCCh-hhHHHHHHHHHHHHhcCCccccCCCCCCCCCCC
Q 048114 43 RIETSFICDICVEPKSTDESFSIKGCSHS-YCTECMTKYVASKLQENITSINCPVADCKGVLE 104 (234)
Q Consensus 43 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 104 (234)
.+++...|+||++.+. +.+. ++|||. ||..|+..+ ..|| .|...+.
T Consensus 20 ~~~~~~~C~iC~~~~~--~~~~-~pCgH~~~C~~C~~~~-----------~~CP--~Cr~~i~ 66 (74)
T 4ic3_A 20 RLQEEKLCKICMDRNI--AIVF-VPCGHLVTCKQCAEAV-----------DKCP--MCYTVIT 66 (74)
T ss_dssp HHHHHTBCTTTSSSBC--CEEE-ETTCCBCCCHHHHTTC-----------SBCT--TTCCBCS
T ss_pred cCccCCCCCCCCCCCC--CEEE-cCCCChhHHHHhhhcC-----------ccCC--CcCcCcc
Confidence 3455778999999874 5444 499999 999998765 5899 8887765
No 57
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=9.3e-07 Score=57.40 Aligned_cols=50 Identities=24% Similarity=0.513 Sum_probs=35.7
Q ss_pred cccccccccCCCC-----------CC-ceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCH
Q 048114 47 SFICDICVEPKST-----------DE-SFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEP 105 (234)
Q Consensus 47 ~~~C~iC~~~~~~-----------~~-~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 105 (234)
..+|+||++++.. ++ .+.+++|+|.|+.+|+.+|+... -.|| .|+..+..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-------~~CP--~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-------NRCP--LCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-------CBCT--TTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-------CCCC--CcCCCcch
Confidence 3457777777742 22 44555799999999999998532 3899 88887654
No 58
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.01 E-value=5.2e-06 Score=53.59 Aligned_cols=51 Identities=24% Similarity=0.492 Sum_probs=40.4
Q ss_pred cccccccccCCCCCCceeeCCCC-----ChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCH
Q 048114 47 SFICDICVEPKSTDESFSIKGCS-----HSYCTECMTKYVASKLQENITSINCPVADCKGVLEP 105 (234)
Q Consensus 47 ~~~C~iC~~~~~~~~~~~~~~C~-----H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 105 (234)
...|.||++++..++.. +++|. |.|+.+||.+|+... ....|| .|+..+..
T Consensus 15 ~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~-----~~~~Cp--lCr~~~~~ 70 (80)
T 2d8s_A 15 QDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSS-----DTRCCE--LCKYEFIM 70 (80)
T ss_dssp SCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHH-----CCSBCS--SSCCBCCC
T ss_pred CCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhC-----CCCCCC--CCCCeeec
Confidence 56799999998765655 46896 999999999999754 246899 88877654
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.98 E-value=2.5e-06 Score=68.43 Aligned_cols=52 Identities=13% Similarity=0.049 Sum_probs=41.5
Q ss_pred CCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHH
Q 048114 45 ETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEY 107 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~ 107 (234)
...+.|+||++.+. +++.+ +|||+||+.|+..|+.. + ...|| .|+..++...
T Consensus 206 ~~~~~c~i~~~~~~--dPv~~-~~gh~f~~~~i~~~~~~----~--~~~cP--~~~~~~~~~~ 257 (281)
T 2c2l_A 206 PDYLCGKISFELMR--EPCIT-PSGITYDRKDIEEHLQR----V--GHFNP--VTRSPLTQEQ 257 (281)
T ss_dssp CSTTBCTTTCSBCS--SEEEC-SSCCEEETTHHHHHHHH----T--CSSCT--TTCCCCCGGG
T ss_pred CcccCCcCcCCHhc--CCeEC-CCCCEECHHHHHHHHHH----C--CCCCc--CCCCCCchhc
Confidence 45889999999886 66665 89999999999999963 2 12399 8999887653
No 60
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.97 E-value=3.9e-06 Score=62.51 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=42.8
Q ss_pred cCCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHH
Q 048114 44 IETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEY 107 (234)
Q Consensus 44 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~ 107 (234)
+...+.|+||++.+. +++.+ +|||+||+.|+..|+... + . .|| .|+..+....
T Consensus 103 ip~~f~CPI~~elm~--DPV~~-~~Ghtfer~~I~~~l~~~---~--~-tcP--~t~~~l~~~~ 155 (179)
T 2f42_A 103 IPDYLCGKISFELMR--EPCIT-PSGITYDRKDIEEHLQRV---G--H-FDP--VTRSPLTQDQ 155 (179)
T ss_dssp CCGGGBCTTTCSBCS--SEEEC-TTSCEEEHHHHHHHHHHT---C--S-BCT--TTCCBCCGGG
T ss_pred CcHhhcccCccccCC--CCeEC-CCCCEECHHHHHHHHHhC---C--C-CCC--CCcCCCChhh
Confidence 466899999999886 66665 999999999999999742 2 2 699 8888887653
No 61
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.95 E-value=1.8e-06 Score=61.32 Aligned_cols=57 Identities=19% Similarity=0.621 Sum_probs=43.4
Q ss_pred CCcccccccccCCCC----CCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHHHhc
Q 048114 45 ETSFICDICVEPKST----DESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEYCRD 110 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~----~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ 110 (234)
+....|+||++.+.. ......++|||.||..|+..|+.. ...|| .|...+..+++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-------~~~CP--~Cr~~~~~~~~~~ 130 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-------ANTCP--TCRKKINHKRYHP 130 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-------CSBCT--TTCCBCCGGGEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-------CCCCC--CCCCcCChhccee
Confidence 457789999998742 122345699999999999999963 24899 8999988776554
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=4.8e-06 Score=52.02 Aligned_cols=44 Identities=25% Similarity=0.693 Sum_probs=33.8
Q ss_pred CCcccccccccCCCCCCceeeCCCCCh-hhHHHHHHHHHHHHhcCCccccCCCCCCCCCCC
Q 048114 45 ETSFICDICVEPKSTDESFSIKGCSHS-YCTECMTKYVASKLQENITSINCPVADCKGVLE 104 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 104 (234)
+....|.||++... + +.+++|+|. ||..|+.. .-.|| .|...+.
T Consensus 13 ~~~~~C~IC~~~~~--~-~v~~pCgH~~~C~~C~~~-----------~~~CP--~CR~~i~ 57 (68)
T 2ea5_A 13 ENSKDCVVCQNGTV--N-WVLLPCRHTCLCDGCVKY-----------FQQCP--MCRQFVQ 57 (68)
T ss_dssp CCSSCCSSSSSSCC--C-CEETTTTBCCSCTTHHHH-----------CSSCT--TTCCCCC
T ss_pred CCCCCCCCcCcCCC--C-EEEECCCChhhhHHHHhc-----------CCCCC--CCCcchh
Confidence 34678999999763 3 556699999 99999973 24799 8887665
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.91 E-value=1.6e-06 Score=55.92 Aligned_cols=46 Identities=26% Similarity=0.809 Sum_probs=35.2
Q ss_pred cCCcccccccccCCCCCCceeeCCCCCh-hhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCH
Q 048114 44 IETSFICDICVEPKSTDESFSIKGCSHS-YCTECMTKYVASKLQENITSINCPVADCKGVLEP 105 (234)
Q Consensus 44 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 105 (234)
+.....|.||++... +. .+++|||. ||..|+..+ ..|| .|...+..
T Consensus 15 l~~~~~C~IC~~~~~--~~-v~~pCgH~~~C~~C~~~~-----------~~CP--~Cr~~i~~ 61 (79)
T 2yho_A 15 LKEAMLCMVCCEEEI--NS-TFCPCGHTVCCESCAAQL-----------QSCP--VCRSRVEH 61 (79)
T ss_dssp HHHHTBCTTTSSSBC--CE-EEETTCBCCBCHHHHTTC-----------SBCT--TTCCBCCE
T ss_pred CCCCCEeEEeCcccC--cE-EEECCCCHHHHHHHHHhc-----------CcCC--CCCchhhC
Confidence 445678999999764 44 44599999 999999754 2899 89887664
No 64
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.91 E-value=1.2e-05 Score=66.80 Aligned_cols=51 Identities=31% Similarity=0.694 Sum_probs=39.4
Q ss_pred cCCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCH
Q 048114 44 IETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEP 105 (234)
Q Consensus 44 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 105 (234)
.+...+|+||++.+. +++ +++|||.||..|+..|+.. ....|| .|...+..
T Consensus 329 ~~~~~~C~ICle~~~--~pv-~lpCGH~FC~~Ci~~wl~~------~~~~CP--~CR~~i~~ 379 (389)
T 2y1n_A 329 GSTFQLCKICAENDK--DVK-IEPCGHLMCTSCLTSWQES------EGQGCP--FCRCEIKG 379 (389)
T ss_dssp TTSSSBCTTTSSSBC--CEE-EETTCCEECHHHHHHHHHH------TCSBCT--TTCCBCCE
T ss_pred cCCCCCCCccCcCCC--CeE-EeCCCChhhHHHHHHHHhc------CCCCCC--CCCCccCC
Confidence 344579999999874 444 4599999999999999863 245899 88887664
No 65
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.84 E-value=7.9e-06 Score=50.38 Aligned_cols=47 Identities=21% Similarity=0.420 Sum_probs=34.9
Q ss_pred cccccccccCCCCCCcee-eCCCCCh-hhHHHHHHHHHHHHhcCCccccCCCCCCCCCCC
Q 048114 47 SFICDICVEPKSTDESFS-IKGCSHS-YCTECMTKYVASKLQENITSINCPVADCKGVLE 104 (234)
Q Consensus 47 ~~~C~iC~~~~~~~~~~~-~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 104 (234)
..+|.||++... +.+. .++|||. ||.+|+..+... .-.|| .|...+.
T Consensus 8 ~~~C~IC~~~~~--~~~~~~~pCgH~~~C~~C~~~~~~~-------~~~CP--iCR~~i~ 56 (64)
T 2vje_A 8 IEPCVICQGRPK--NGCIVHGKTGHLMACFTCAKKLKKR-------NKPCP--VCRQPIQ 56 (64)
T ss_dssp GSCCTTTSSSCS--CEEEEETTEEEEEECHHHHHHHHHT-------TCCCT--TTCCCCC
T ss_pred cCCCCcCCCCCC--CEEEECCCCCChhhHHHHHHHHHHc-------CCcCC--CcCcchh
Confidence 557999999764 3332 2399999 899999988751 24799 8887764
No 66
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.83 E-value=7.9e-06 Score=50.21 Aligned_cols=47 Identities=19% Similarity=0.496 Sum_probs=34.8
Q ss_pred cccccccccCCCCCCc-eeeCCCCCh-hhHHHHHHHHHHHHhcCCccccCCCCCCCCCCC
Q 048114 47 SFICDICVEPKSTDES-FSIKGCSHS-YCTECMTKYVASKLQENITSINCPVADCKGVLE 104 (234)
Q Consensus 47 ~~~C~iC~~~~~~~~~-~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 104 (234)
..+|.||++... +. +.+.+|||. ||.+|..++... .-.|| .|...+.
T Consensus 7 ~~~C~IC~~~~~--~~~~~~~pCgH~~~C~~C~~~~~~~-------~~~CP--iCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPR--DGNIIHGRTGHLVTCFHCARRLKKA-------GASCP--ICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBS--CEEEEETTEEEEEECHHHHHHHHHT-------TCBCT--TTCCBCC
T ss_pred CCCCcccCCcCC--CeEEEecCCCCHhHHHHHHHHHHHh-------CCcCC--CcCchhh
Confidence 567999999764 32 233499999 999999987742 24799 8887764
No 67
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.82 E-value=1.5e-05 Score=54.28 Aligned_cols=49 Identities=18% Similarity=0.391 Sum_probs=37.5
Q ss_pred cccccccccCCCCCC---------------ceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCC
Q 048114 47 SFICDICVEPKSTDE---------------SFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLE 104 (234)
Q Consensus 47 ~~~C~iC~~~~~~~~---------------~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 104 (234)
..+|.||++.+...- .+.+++|+|.|+..|+..|+.. ...|| .|...+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-------~~~CP--~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-------RQVCP--LDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-------CSBCS--SSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-------CCcCc--CCCCcce
Confidence 467999999986331 2455699999999999999852 35799 8887754
No 68
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.50 E-value=1.5e-05 Score=55.23 Aligned_cols=50 Identities=18% Similarity=0.358 Sum_probs=0.4
Q ss_pred cccccccccCCCCCC---------------ceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCH
Q 048114 47 SFICDICVEPKSTDE---------------SFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEP 105 (234)
Q Consensus 47 ~~~C~iC~~~~~~~~---------------~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 105 (234)
..+|.||++++.... .+..++|+|.|+..|+..|+.. .-.|| .|...+..
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-------~~~CP--~Cr~~~~~ 112 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-------RQVCP--LDNREWEF 112 (117)
T ss_dssp C-------------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-------CCcCC--CCCCeeee
Confidence 357999999985311 2233589999999999999964 23699 78776543
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.25 E-value=5.2e-05 Score=62.50 Aligned_cols=46 Identities=26% Similarity=0.806 Sum_probs=36.3
Q ss_pred hcCCcccccccccCCCCCCceeeCCCCCh-hhHHHHHHHHHHHHhcCCccccCCCCCCCCCCC
Q 048114 43 RIETSFICDICVEPKSTDESFSIKGCSHS-YCTECMTKYVASKLQENITSINCPVADCKGVLE 104 (234)
Q Consensus 43 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 104 (234)
.++....|+||++.+. +++. ++|||. ||..|+..+ ..|| .|...+.
T Consensus 291 ~l~~~~~C~IC~~~~~--~~v~-lpCgH~~fC~~C~~~~-----------~~CP--~CR~~i~ 337 (345)
T 3t6p_A 291 RLQEERTCKVCMDKEV--SVVF-IPCGHLVVCQECAPSL-----------RKCP--ICRGIIK 337 (345)
T ss_dssp HHHTTCBCTTTSSSBC--CEEE-ETTCCEEECTTTGGGC-----------SBCT--TTCCBCC
T ss_pred hCcCCCCCCccCCcCC--ceEE-cCCCChhHhHHHHhcC-----------CcCC--CCCCCcc
Confidence 3466789999999875 5554 499999 999999754 5799 8887765
No 70
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.18 E-value=0.00044 Score=43.62 Aligned_cols=51 Identities=25% Similarity=0.555 Sum_probs=38.1
Q ss_pred CCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCC
Q 048114 45 ETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLE 104 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 104 (234)
+...+|.||++.+... .....|+|.|...|+.+|++.. ..-.|| .|...+.
T Consensus 13 ~~i~~C~IC~~~i~~g--~~C~~C~h~fH~~Ci~kWl~~~-----~~~~CP--~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSN-----AEPRCP--HCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSS--EECSSSCCEECHHHHHHHSTTC-----SSCCCT--TTCSCCC
T ss_pred CCCCcCcchhhHcccC--CccCCCCchhhHHHHHHHHHhc-----CCCCCC--CCcCcCC
Confidence 3356799999998643 3344999999999999999532 235799 7877665
No 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.83 E-value=0.00061 Score=41.28 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=39.5
Q ss_pred cccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHHHh
Q 048114 47 SFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEYCR 109 (234)
Q Consensus 47 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~ 109 (234)
.+.|+|+++.+. +++...++||.|++.++.+|+... + +|| ..+..|..+++.
T Consensus 3 ~~~CpIs~~~m~--dPV~~~~sG~~yer~~I~~~l~~~---~----~cP--~t~~~L~~~~Li 54 (61)
T 2bay_A 3 HMLCAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDT---G----NDP--ITNEPLSIEEIV 54 (61)
T ss_dssp -CCCTTTCSCCS--SEEEETTTTEEEEHHHHHHHHHHH---S----BCT--TTCCBCCGGGCE
T ss_pred eEEecCCCCCCC--CCEEeCCCCcEEcHHHHHHHHHhC---C----CCc--CCcCCCChhhcE
Confidence 467999999886 666554899999999999999742 2 388 677777766544
No 72
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.40 E-value=0.0015 Score=53.23 Aligned_cols=59 Identities=19% Similarity=0.458 Sum_probs=42.3
Q ss_pred CCcccccccccCCCC-CCce----eeCCCCChhhHHHHHHHHHHHHhc----CCccccCCCCCCCCCCCH
Q 048114 45 ETSFICDICVEPKST-DESF----SIKGCSHSYCTECMTKYVASKLQE----NITSINCPVADCKGVLEP 105 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~-~~~~----~~~~C~H~fC~~Cl~~~~~~~i~~----~~~~i~CP~~~C~~~l~~ 105 (234)
+...+|+|||+.+.. ...+ ....|+|.|...|+.+|+.+.-.. +...=.|| .|+..++-
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CP--yCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCP--FCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECT--TTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCC--CCCCcCCc
Confidence 457789999999865 2222 124899999999999999876432 22233799 89987763
No 73
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.20 E-value=0.0044 Score=37.26 Aligned_cols=38 Identities=37% Similarity=0.950 Sum_probs=31.7
Q ss_pred CeecCCCCCCCCceecCCCCccCcccCcc--ccccccccCCCCC
Q 048114 133 QKFYCPFKDCSALLIDDGGEAIRESVCPD--CNRMFCAQCKVPW 174 (234)
Q Consensus 133 ~~~~Cp~~~C~~~~~~~~~~~~~~~~C~~--C~~~~C~~C~~~~ 174 (234)
+...|| .|...+...++ -+.+.|.. |+..||+.|+.+|
T Consensus 5 ~~k~CP--~C~~~Iek~~G--CnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 5 NTKECP--KCHVTIEKDGG--CNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCCT--TTCCCCSSCCS--CCSSSCCSSGGGSCCSSSSCSCS
T ss_pred cceECc--CCCCeeEeCCC--CCcEEECCCCcCCEEeeCcCCCc
Confidence 446799 99999887653 56799988 9999999999987
No 74
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.97 E-value=0.011 Score=35.56 Aligned_cols=49 Identities=18% Similarity=0.476 Sum_probs=35.3
Q ss_pred CcccccccccCCCCCCceeeCCCC--C---hhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCC
Q 048114 46 TSFICDICVEPKSTDESFSIKGCS--H---SYCTECMTKYVASKLQENITSINCPVADCKGVLE 104 (234)
Q Consensus 46 ~~~~C~iC~~~~~~~~~~~~~~C~--H---~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 104 (234)
....|-||+++.. +.. +.+|. + .|..+||.+|+... ....|| .|+..+.
T Consensus 5 ~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~-----~~~~C~--~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTIS-----RNTACQ--ICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHH-----TCSBCT--TTCCBCC
T ss_pred CCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhC-----CCCccC--CCCCeee
Confidence 3567999998743 323 35765 4 79999999999754 246899 8887664
No 75
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.75 E-value=0.0062 Score=40.18 Aligned_cols=46 Identities=24% Similarity=0.588 Sum_probs=31.2
Q ss_pred cccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCC
Q 048114 49 ICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLE 104 (234)
Q Consensus 49 ~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 104 (234)
-|++|--++. .-..+.+|.|.||.+|...|.+.. .=.|| .|...+.
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~------~k~Cp--~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKG------DKMCP--GCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTT------CCBCT--TTCCBCS
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhcc------CCCCc--CcCCeee
Confidence 4888855543 334566999999999999887532 22566 6665544
No 76
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.70 E-value=0.006 Score=40.76 Aligned_cols=34 Identities=26% Similarity=0.700 Sum_probs=24.8
Q ss_pred cccccccccCCCCCCceeeCCCCChhhHHHHHHH
Q 048114 47 SFICDICVEPKSTDESFSIKGCSHSYCTECMTKY 80 (234)
Q Consensus 47 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~ 80 (234)
...|+||.+.+.......-+.|+|+||..|++.+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 5679999976432222333699999999999983
No 77
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=95.62 E-value=0.019 Score=35.90 Aligned_cols=50 Identities=20% Similarity=0.489 Sum_probs=38.8
Q ss_pred CCcccccccccCCCCCCceeeCCC-CChhhHHHHHHHHHHHHhcCCccccCCC
Q 048114 45 ETSFICDICVEPKSTDESFSIKGC-SHSYCTECMTKYVASKLQENITSINCPV 96 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~~~~~~~~~C-~H~fC~~Cl~~~~~~~i~~~~~~i~CP~ 96 (234)
...+.|.+|.+.++....++.++= .|.||..|-+.+|+.+-. ...+.||.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~--~~EvyCPS 63 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGA--TGEVYCPS 63 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHS--SSCCCCTT
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCC--CCcEECCC
Confidence 447789999999987776654322 799999999999998743 35778885
No 78
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=93.26 E-value=0.04 Score=32.34 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=21.0
Q ss_pred CCcccCCCCCceeeeccCCCceEe-cCCCC
Q 048114 205 ENWRRCPNCKIFVEKKEGCRYMRC-SSNPQ 233 (234)
Q Consensus 205 ~~~k~CP~C~~~i~k~~GCnhm~C-~C~~~ 233 (234)
...+.||+|+..+.-...-+.++| +||+.
T Consensus 16 ~~~~fCPkCG~~~~ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 16 RKHRFCPRCGPGVFLAEHADRYSCGRCGYT 45 (55)
T ss_dssp CSSCCCTTTTTTCCCEECSSEEECTTTCCC
T ss_pred EccccCcCCCCceeEeccCCEEECCCCCCE
Confidence 346899999985543344479999 59986
No 79
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=92.78 E-value=0.11 Score=40.47 Aligned_cols=52 Identities=27% Similarity=0.522 Sum_probs=39.5
Q ss_pred CcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHH
Q 048114 46 TSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPE 106 (234)
Q Consensus 46 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~ 106 (234)
....|.||.+-+.. ......|+|.|...|+..|+.. .....|| .|+..++.+
T Consensus 179 ~i~~C~iC~~iv~~--g~~C~~C~~~~H~~C~~~~~~~-----~~~~~CP--~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQS-----NAEPRCP--HCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSS--CEECSSSCCEECHHHHHHHTTT-----CSSCBCT--TTCCBCCSC
T ss_pred CCCcCcchhhHHhC--CcccCccChHHHHHHHHHHHHh-----CCCCCCC--CCCCCCCCC
Confidence 46789999998863 3444469999999999999853 2356899 898876643
No 80
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=92.13 E-value=0.068 Score=30.63 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=20.0
Q ss_pred CCcccCCCCCceeeeccCCCceEe-cCCCC
Q 048114 205 ENWRRCPNCKIFVEKKEGCRYMRC-SSNPQ 233 (234)
Q Consensus 205 ~~~k~CP~C~~~i~k~~GCnhm~C-~C~~~ 233 (234)
...+.||+|+..+.-...=+.++| +||+.
T Consensus 17 ~~~k~CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp CSSEECSSSCSSCEEEECSSEEECSSSCCE
T ss_pred EecccCCCCCCceEEecCCCeEECCCCCCE
Confidence 456899999984332222278999 59975
No 81
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=91.70 E-value=0.087 Score=33.97 Aligned_cols=30 Identities=10% Similarity=0.256 Sum_probs=23.3
Q ss_pred CCcccCCCCCceeeeccCCCceEec-CCCCC
Q 048114 205 ENWRRCPNCKIFVEKKEGCRYMRCS-SNPQL 234 (234)
Q Consensus 205 ~~~k~CP~C~~~i~k~~GCnhm~C~-C~~~F 234 (234)
.+.+-||+|...+...++-..++|. |++.|
T Consensus 23 ~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~F 53 (86)
T 2ct7_A 23 PKFLWCAQCSFGFIYEREQLEATCPQCHQTF 53 (86)
T ss_dssp CCEECCSSSCCCEECCCSCSCEECTTTCCEE
T ss_pred CCEeECcCCCchheecCCCCceEeCCCCCcc
Confidence 4566799999988877777778884 88765
No 82
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=91.67 E-value=0.065 Score=34.28 Aligned_cols=30 Identities=23% Similarity=0.501 Sum_probs=25.7
Q ss_pred CCcccCCCCCceeeeccCCCceEec-CCCCC
Q 048114 205 ENWRRCPNCKIFVEKKEGCRYMRCS-SNPQL 234 (234)
Q Consensus 205 ~~~k~CP~C~~~i~k~~GCnhm~C~-C~~~F 234 (234)
....+||.|+....+..+=..+.|. ||+.|
T Consensus 25 ~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 25 NEDHACPNCGEDRVDRQGTGIWQCSYCDYKF 55 (83)
T ss_dssp HSCEECSSSCCEEEEEEETTEEEETTTCCEE
T ss_pred cccCcCCCCCCcceeccCCCeEECCCCCCEe
Confidence 3457999999999998888899995 99876
No 83
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=91.08 E-value=0.095 Score=33.31 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=25.5
Q ss_pred CCcccCCC--CCceeeeccCCCceEe------cCCCCC
Q 048114 205 ENWRRCPN--CKIFVEKKEGCRYMRC------SSNPQL 234 (234)
Q Consensus 205 ~~~k~CP~--C~~~i~k~~GCnhm~C------~C~~~F 234 (234)
...+-||. |+..|...++...++| .||+.|
T Consensus 23 ~~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~F 60 (80)
T 2jmo_A 23 MGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAF 60 (80)
T ss_dssp CSSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCE
T ss_pred CCcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCee
Confidence 45789997 9999988888888999 688877
No 84
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=90.58 E-value=0.24 Score=28.19 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=22.4
Q ss_pred CcccCCCCCc-eeeeccCCCceEec-CCCCC
Q 048114 206 NWRRCPNCKI-FVEKKEGCRYMRCS-SNPQL 234 (234)
Q Consensus 206 ~~k~CP~C~~-~i~k~~GCnhm~C~-C~~~F 234 (234)
....||.|+. .+.-+..=..+.|. ||.-|
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 3468999998 77777666789996 99743
No 85
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=90.20 E-value=0.41 Score=30.64 Aligned_cols=59 Identities=22% Similarity=0.521 Sum_probs=38.5
Q ss_pred cCCCCCCCCceecCCCCccCcccCccccccccccCCCCCCCCCChhhHHHhhhccCChHHHHHHHHHhcCCcccCCCCCc
Q 048114 136 YCPFKDCSALLIDDGGEAIRESVCPDCNRMFCAQCKVPWHAGIRCAEFQKLHKDEREPEDIMLMTLAQKENWRRCPNCKI 215 (234)
Q Consensus 136 ~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~l~~~~~~~~~k~CP~C~~ 215 (234)
.|. -|+.-+-..... ...+.|..|++.+|..| .+|.+ +...+.||+|+.
T Consensus 18 iCq--iCGD~VG~~~~G-e~FVAC~eC~FPvCrpC----------yEYEr------------------keG~q~CpqCkt 66 (93)
T 1weo_A 18 FCE--ICGDQIGLTVEG-DLFVACNECGFPACRPC----------YEYER------------------REGTQNCPQCKT 66 (93)
T ss_dssp BCS--SSCCBCCBCSSS-SBCCSCSSSCCCCCHHH----------HHHHH------------------HTSCSSCTTTCC
T ss_pred ccc--cccCccccCCCC-CEEEeeeccCChhhHHH----------HHHHH------------------hccCccccccCC
Confidence 455 555443333222 24589999999999844 44433 467799999999
Q ss_pred eeeeccCCCc
Q 048114 216 FVEKKEGCRY 225 (234)
Q Consensus 216 ~i~k~~GCnh 225 (234)
...+..|...
T Consensus 67 rYkr~kgsp~ 76 (93)
T 1weo_A 67 RYKRLRGSPR 76 (93)
T ss_dssp CCCCCTTCCC
T ss_pred ccccccCCCC
Confidence 9877666543
No 86
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=89.72 E-value=0.17 Score=35.47 Aligned_cols=31 Identities=13% Similarity=0.395 Sum_probs=23.5
Q ss_pred cCCcccCCCCCceee-ecc---CCCceEec-CCCCC
Q 048114 204 KENWRRCPNCKIFVE-KKE---GCRYMRCS-SNPQL 234 (234)
Q Consensus 204 ~~~~k~CP~C~~~i~-k~~---GCnhm~C~-C~~~F 234 (234)
...++.||.|+.++. +.+ |.+.+.|+ |||++
T Consensus 21 ~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 21 MTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp -CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred ccCCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 467899999999664 332 68899996 99964
No 87
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=83.60 E-value=0.4 Score=29.30 Aligned_cols=29 Identities=14% Similarity=0.121 Sum_probs=24.3
Q ss_pred CcccCCCCCceeeeccCCCceEec-CCCCC
Q 048114 206 NWRRCPNCKIFVEKKEGCRYMRCS-SNPQL 234 (234)
Q Consensus 206 ~~k~CP~C~~~i~k~~GCnhm~C~-C~~~F 234 (234)
.+-.||.|+...+-..+...++|. ||..|
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 7 DILVCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCCBCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 456899999999888888999995 98654
No 88
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=82.16 E-value=0.3 Score=28.96 Aligned_cols=36 Identities=33% Similarity=0.762 Sum_probs=24.9
Q ss_pred ecCCCCCCCCceecCCCCccCcccCccccccccccCCCCCCCC
Q 048114 135 FYCPFKDCSALLIDDGGEAIRESVCPDCNRMFCAQCKVPWHAG 177 (234)
Q Consensus 135 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~ 177 (234)
..|- +|...+.. .....|+.|+..||..|..-.|..
T Consensus 16 ~~C~--~C~~~~~~-----~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 16 RFCY--GCQGELKD-----QHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp CEET--TTTEECTT-----SEEECCTTTTCCBCHHHHHTTTTT
T ss_pred Cccc--ccCcccCC-----CccEECCccCcCcccchhHHHHhh
Confidence 3576 77766531 112689999999999887766643
No 89
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=81.99 E-value=0.66 Score=30.22 Aligned_cols=27 Identities=22% Similarity=0.617 Sum_probs=22.1
Q ss_pred CcccCCCCCceeeeccCCCceEec-CCCCC
Q 048114 206 NWRRCPNCKIFVEKKEGCRYMRCS-SNPQL 234 (234)
Q Consensus 206 ~~k~CP~C~~~i~k~~GCnhm~C~-C~~~F 234 (234)
+...||.|+..++..+| +.+|. |+.+|
T Consensus 31 M~~~CP~Cq~eL~~~g~--~~hC~~C~~~f 58 (101)
T 2jne_A 31 MELHCPQCQHVLDQDNG--HARCRSCGEFI 58 (101)
T ss_dssp CCCBCSSSCSBEEEETT--EEEETTTCCEE
T ss_pred ccccCccCCCcceecCC--EEECccccchh
Confidence 34799999999998887 77895 88765
No 90
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=81.52 E-value=0.6 Score=28.05 Aligned_cols=32 Identities=28% Similarity=0.649 Sum_probs=25.2
Q ss_pred CcccccccccCCCCCCceeeCCC-CChhhHHHHHHHH
Q 048114 46 TSFICDICVEPKSTDESFSIKGC-SHSYCTECMTKYV 81 (234)
Q Consensus 46 ~~~~C~iC~~~~~~~~~~~~~~C-~H~fC~~Cl~~~~ 81 (234)
+..-|.||.++- .+....| +-.||..||++.-
T Consensus 7 e~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 7 GLPWCCICNEDA----TLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCSSCTTTCSCC----CEEETTTTSEEECSSHHHHHT
T ss_pred CCCeeEEeCCCC----eEEecCCCCceehHHHHHHHc
Confidence 355699998872 3566799 8889999999876
No 91
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=81.44 E-value=0.7 Score=29.20 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=14.4
Q ss_pred ccCCCCCceeeeccCCCceEec-CCCC
Q 048114 208 RRCPNCKIFVEKKEGCRYMRCS-SNPQ 233 (234)
Q Consensus 208 k~CP~C~~~i~k~~GCnhm~C~-C~~~ 233 (234)
..||.|+..|+.++| +..|. |+..
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~~C~~~ 27 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCETCAKD 27 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECTTTCCE
T ss_pred CCCCCCCCccccCCC--ceECcccccc
Confidence 457777776666665 44563 6554
No 92
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=76.42 E-value=1.9 Score=30.08 Aligned_cols=35 Identities=17% Similarity=0.318 Sum_probs=24.0
Q ss_pred hCCCeecCCCCCCCCceecCCCC--ccCcccCccccccc
Q 048114 130 LGAQKFYCPFKDCSALLIDDGGE--AIRESVCPDCNRMF 166 (234)
Q Consensus 130 ~~~~~~~Cp~~~C~~~~~~~~~~--~~~~~~C~~C~~~~ 166 (234)
......+|| .|++.+...++. ....+.|+.|++..
T Consensus 20 ~~~~~~FCP--eCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 20 HMTTFRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp --CCCCBCT--TTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred cccCCeeCC--CCCCEeeECccCCCceeEEECCCCCCcE
Confidence 445667999 999998876432 34458888888753
No 93
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=75.70 E-value=1.1 Score=29.44 Aligned_cols=18 Identities=33% Similarity=0.619 Sum_probs=14.4
Q ss_pred cCCcccCCCCCceeeecc
Q 048114 204 KENWRRCPNCKIFVEKKE 221 (234)
Q Consensus 204 ~~~~k~CP~C~~~i~k~~ 221 (234)
+...+.||.|+..|++.+
T Consensus 34 ~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 34 KKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp HTTCCBCTTTCCBCSEEE
T ss_pred hccCCCCcCcCCeeeeeE
Confidence 466789999999988754
No 94
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=73.75 E-value=1.4 Score=26.96 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=19.8
Q ss_pred CcccCCCCCceeeeccCCCceEec-CCC
Q 048114 206 NWRRCPNCKIFVEKKEGCRYMRCS-SNP 232 (234)
Q Consensus 206 ~~k~CP~C~~~i~k~~GCnhm~C~-C~~ 232 (234)
..-.|+.|+..++...+ .-+.|+ ||+
T Consensus 27 v~Y~C~~CG~~~e~~~~-d~irCp~CG~ 53 (70)
T 1twf_L 27 LKYICAECSSKLSLSRT-DAVRCKDCGH 53 (70)
T ss_dssp CCEECSSSCCEECCCTT-STTCCSSSCC
T ss_pred EEEECCCCCCcceeCCC-CCccCCCCCc
Confidence 34589999999877644 668896 987
No 95
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=73.29 E-value=6 Score=25.31 Aligned_cols=50 Identities=26% Similarity=0.648 Sum_probs=34.2
Q ss_pred cccccccccCCCCC---Cce-eeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCC
Q 048114 47 SFICDICVEPKSTD---ESF-SIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLE 104 (234)
Q Consensus 47 ~~~C~iC~~~~~~~---~~~-~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 104 (234)
...|.||.+++-.. +.| ..-.|+=.+|+.|+.--.. ++ .-.|| .|+..+.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk----eG--~q~Cp--qCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR----EG--TQNCP--QCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH----TS--CSSCT--TTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh----cc--Ccccc--ccCCccc
Confidence 56799999997422 233 2346777899999975553 44 45789 8887664
No 96
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=71.03 E-value=1.6 Score=26.55 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=21.4
Q ss_pred cccCCCCCceeeeccCCCceEec-CCCCC
Q 048114 207 WRRCPNCKIFVEKKEGCRYMRCS-SNPQL 234 (234)
Q Consensus 207 ~k~CP~C~~~i~k~~GCnhm~C~-C~~~F 234 (234)
+-.||.|+...+-..+=..++|. ||..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 45899999988876666778995 88654
No 97
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=70.75 E-value=1.8 Score=26.52 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=22.4
Q ss_pred CcccCCCCCceeeeccCCCceEec-CCCCC
Q 048114 206 NWRRCPNCKIFVEKKEGCRYMRCS-SNPQL 234 (234)
Q Consensus 206 ~~k~CP~C~~~i~k~~GCnhm~C~-C~~~F 234 (234)
.+-.||.|+...+-..+=..++|. ||..|
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 7 DILVCPVCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCCBCTTTCCBEEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCCcCEEeCCCCEEEcCCCCcee
Confidence 456899999988877666779995 88654
No 98
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=70.56 E-value=3.5 Score=24.12 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=19.1
Q ss_pred CcccCCCCCc-eeeeccCCCceEec-CCC
Q 048114 206 NWRRCPNCKI-FVEKKEGCRYMRCS-SNP 232 (234)
Q Consensus 206 ~~k~CP~C~~-~i~k~~GCnhm~C~-C~~ 232 (234)
....||.|+. .|..+..=.-+.|. ||.
T Consensus 10 ~~~~Cp~C~~~~lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 10 PRVTCPNHPDAILVEDYRAGDMICPECGL 38 (58)
T ss_dssp SCCSBTTBSSSCCEECSSSCCEECTTTCC
T ss_pred ccccCcCCCCCceeEeCCCCeEEeCCCCC
Confidence 4458999986 56555555669995 885
No 99
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=69.23 E-value=1.9 Score=26.33 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=21.0
Q ss_pred cccCCCCCceeeeccCCCceEec-CCCCC
Q 048114 207 WRRCPNCKIFVEKKEGCRYMRCS-SNPQL 234 (234)
Q Consensus 207 ~k~CP~C~~~i~k~~GCnhm~C~-C~~~F 234 (234)
+-.||.|+....-..+=..++|. ||..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred heeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 45899999988766655678995 88654
No 100
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=67.08 E-value=2.8 Score=29.09 Aligned_cols=46 Identities=15% Similarity=0.621 Sum_probs=32.2
Q ss_pred ccCCCCCCCC---CCCHHHHhccCCHHHHHHHHHHHHHHHHhCCCeecCCCCCCCCceecC
Q 048114 92 INCPVADCKG---VLEPEYCRDILPEDVFNRWGNALCEAVILGAQKFYCPFKDCSALLIDD 149 (234)
Q Consensus 92 i~CP~~~C~~---~l~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~ 149 (234)
+.|| .|+. .+....++++|.++.+. +...+..+|++++|.-+++..
T Consensus 2 ~~CP--~Cg~~G~~V~~~Tvk~ll~~~~~~----------~~~~~y~~C~~~~C~VvYf~~ 50 (130)
T 2hu9_A 2 MRCP--ECSTEGWRVLPLTVGAHVKEGLWS----------KIKGDFYFCSLESCEVVYFNE 50 (130)
T ss_dssp CBCT--TTCCBCEEECHHHHHHHBCGGGGG----------GCCSCEEECCCTTCSEEEECS
T ss_pred CcCC--CCCCcCcCccHHHHHHHhhHHHhc----------cCCCCEEeECCCCCCEEEECC
Confidence 4699 7754 57777888877665442 244567899999999777643
No 101
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=67.00 E-value=1.6 Score=32.26 Aligned_cols=75 Identities=15% Similarity=0.263 Sum_probs=44.7
Q ss_pred cccccccccCCCCCC----ceeeCCCCChhhHHHHHHHHH--HHHhc--CCccccCCCCCCCCCCCHHHHhccCCHHHHH
Q 048114 47 SFICDICVEPKSTDE----SFSIKGCSHSYCTECMTKYVA--SKLQE--NITSINCPVADCKGVLEPEYCRDILPEDVFN 118 (234)
Q Consensus 47 ~~~C~iC~~~~~~~~----~~~~~~C~H~fC~~Cl~~~~~--~~i~~--~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~ 118 (234)
...|+||...+..++ ++....|..-|...|..-.-. ..+.+ ......|| .|...-+. .++..+..++..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp--~C~~~~~~-~~~~~~~~el~~ 78 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCV--NCTERHPA-EWRLALEKELQI 78 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCT--TTCCSSSC-HHHHHHHHHHHH
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECc--CCCCCCCH-HHHHHHHHHHHH
Confidence 456999998886654 667778888888888742211 12211 11367899 88766554 244444455555
Q ss_pred HHHHHH
Q 048114 119 RWGNAL 124 (234)
Q Consensus 119 ~~~~~~ 124 (234)
.+.+.+
T Consensus 79 ~l~~vl 84 (183)
T 3lqh_A 79 SLKQVL 84 (183)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 102
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=66.95 E-value=4.5 Score=22.44 Aligned_cols=30 Identities=20% Similarity=0.476 Sum_probs=22.4
Q ss_pred cCCCCCCCCceecCCCCccCcccCcccccccc
Q 048114 136 YCPFKDCSALLIDDGGEAIRESVCPDCNRMFC 167 (234)
Q Consensus 136 ~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C 167 (234)
.|- .|+..+...+....+.+.||.||+.+=
T Consensus 5 ~C~--rCg~~fs~~el~~lP~IrCpyCGyrii 34 (48)
T 4ayb_P 5 RCG--KCWKTFTDEQLKVLPGVRCPYCGYKII 34 (48)
T ss_dssp CCC--CTTTTCCCCCSCCCSSSCCTTTCCSCE
T ss_pred Eee--ccCCCccHHHHhhCCCcccCccCcEEE
Confidence 466 788877776666667799999998653
No 103
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=66.72 E-value=25 Score=23.32 Aligned_cols=52 Identities=25% Similarity=0.547 Sum_probs=32.8
Q ss_pred CCcccccccccCC------CCCCceeeCCCCChhhHHHHHH--HHHHHHhcCCccccCCCCCCC
Q 048114 45 ETSFICDICVEPK------STDESFSIKGCSHSYCTECMTK--YVASKLQENITSINCPVADCK 100 (234)
Q Consensus 45 ~~~~~C~iC~~~~------~~~~~~~~~~C~H~fC~~Cl~~--~~~~~i~~~~~~i~CP~~~C~ 100 (234)
.+...|.+|+..- ...+.+.-..|+..|...|+.- -+...+.++ .-.|| .|.
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~--~W~C~--~C~ 62 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKAL--RWQCI--ECK 62 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTS--CCCCT--TTC
T ss_pred ccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhcc--ccccc--cCC
Confidence 4567799998753 2235566678999999999852 233334333 45677 554
No 104
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=66.00 E-value=3.6 Score=27.73 Aligned_cols=31 Identities=19% Similarity=0.547 Sum_probs=22.4
Q ss_pred eecCCCCCCCCceecCCC--CccCcccCccccccc
Q 048114 134 KFYCPFKDCSALLIDDGG--EAIRESVCPDCNRMF 166 (234)
Q Consensus 134 ~~~Cp~~~C~~~~~~~~~--~~~~~~~C~~C~~~~ 166 (234)
..+|| .|++.+..... .....+.|+.|++..
T Consensus 4 m~FCp--~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCI--ECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCS--SSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred ceeCc--CCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 46899 99998877643 234468888888754
No 105
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=64.24 E-value=4.2 Score=28.98 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=21.1
Q ss_pred CcccCCC--CCceeeeccCCCceEe-cCCCCC
Q 048114 206 NWRRCPN--CKIFVEKKEGCRYMRC-SSNPQL 234 (234)
Q Consensus 206 ~~k~CP~--C~~~i~k~~GCnhm~C-~C~~~F 234 (234)
.-+.||+ |+.-+.-..-=+..+| +||+.|
T Consensus 117 ~~~~c~~~~cg~g~fma~h~~r~~cgkc~~t~ 148 (152)
T 3u5c_f 117 LRRECSNPTCGAGVFLANHKDRLYCGKCHSVY 148 (152)
T ss_dssp CSCBCCSTTSCSSSBEEECSSCEEESSSSSCC
T ss_pred CcCcCCCccCCCceEecccCCCcccCCCceEE
Confidence 4589999 9986554443368999 699865
No 106
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=63.21 E-value=4 Score=26.43 Aligned_cols=49 Identities=24% Similarity=0.427 Sum_probs=33.4
Q ss_pred cCCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCH
Q 048114 44 IETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEP 105 (234)
Q Consensus 44 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 105 (234)
.-..+.|-.|.-... ..+. -..|.+|..|+..++.. .=.|| .|+..|.-
T Consensus 25 ~~G~~nCKsCWf~~k--~LV~--C~dHYLCl~CLtlmL~~-------SdrCp--IC~~pLPt 73 (99)
T 2ko5_A 25 HLGPQFCKSCWFENK--GLVE--CNNHYLCLNCLTLLLSV-------SNRCP--ICKMPLPT 73 (99)
T ss_dssp CSCCCCCCSSCSCCS--SEEE--CSSCEEEHHHHHHTCSS-------SSEET--TTTEECCC
T ss_pred ccCcccChhhccccC--Ceee--ecchhhHHHHHHHHHhh-------ccCCc--ccCCcCCc
Confidence 355678999987543 3221 34899999999877642 23688 78876653
No 107
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=62.81 E-value=2.7 Score=29.35 Aligned_cols=34 Identities=24% Similarity=0.512 Sum_probs=24.7
Q ss_pred CCcccccccccCCCC--CCceeeCCCCChhhHHHHH
Q 048114 45 ETSFICDICVEPKST--DESFSIKGCSHSYCTECMT 78 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~--~~~~~~~~C~H~fC~~Cl~ 78 (234)
.....|.+|..++.. +.......|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 346789999999832 2334556899999998853
No 108
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=62.22 E-value=2.7 Score=28.82 Aligned_cols=32 Identities=19% Similarity=0.395 Sum_probs=22.9
Q ss_pred CeecCCCCCCCCceecCCC--CccCcccCccccccc
Q 048114 133 QKFYCPFKDCSALLIDDGG--EAIRESVCPDCNRMF 166 (234)
Q Consensus 133 ~~~~Cp~~~C~~~~~~~~~--~~~~~~~C~~C~~~~ 166 (234)
...+|| .|++.+....+ .....+.|+.|++..
T Consensus 3 ~~~FCp--~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 3 TFRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCCBCS--SSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCCccc--ccCccCcccccCcCCCCEEECCcCCCee
Confidence 346899 99998886543 334568898888754
No 109
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=61.93 E-value=5 Score=21.32 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=21.1
Q ss_pred cCcccCccccccccccCCC-CCCCCCC
Q 048114 154 IRESVCPDCNRMFCAQCKV-PWHAGIR 179 (234)
Q Consensus 154 ~~~~~C~~C~~~~C~~C~~-~~H~~~~ 179 (234)
...++|..++..+|..|.. ..|.+++
T Consensus 12 ~l~lfC~~d~~~iC~~C~~~~~H~~H~ 38 (42)
T 1fre_A 12 RLKLYCKDDGTLSCVICRDSLKHASHN 38 (42)
T ss_dssp SCCCCCCSSSSSSCCTTSSCSSCTTCC
T ss_pred eeeEEeCCCCeEEeccCCCCCCCCCCc
Confidence 3458999999999999987 5787764
No 110
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=61.77 E-value=3.1 Score=21.77 Aligned_cols=25 Identities=16% Similarity=0.430 Sum_probs=18.1
Q ss_pred cCCCCCc---eeeeccCCCceEec-CCCC
Q 048114 209 RCPNCKI---FVEKKEGCRYMRCS-SNPQ 233 (234)
Q Consensus 209 ~CP~C~~---~i~k~~GCnhm~C~-C~~~ 233 (234)
.||.|+. .+.+..+=-.+.|. ||+.
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCc
Confidence 4899987 35556677778895 9864
No 111
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=60.59 E-value=3.5 Score=24.99 Aligned_cols=30 Identities=17% Similarity=0.038 Sum_probs=22.1
Q ss_pred CCcccCCCCCceeeeccCCCceEec-CCCCC
Q 048114 205 ENWRRCPNCKIFVEKKEGCRYMRCS-SNPQL 234 (234)
Q Consensus 205 ~~~k~CP~C~~~i~k~~GCnhm~C~-C~~~F 234 (234)
..+-.||.|+..++-...=+.+.|. ||..|
T Consensus 8 LeiL~CP~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 8 LEVLACPKDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp TCCCBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred HHHhCCCCCCCcCeEeCCCCEEEcCCCCccc
Confidence 3456899999988876655678885 87544
No 112
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=60.32 E-value=2.8 Score=26.70 Aligned_cols=28 Identities=14% Similarity=0.436 Sum_probs=21.1
Q ss_pred cccCCCCCce------eeeccCCCceEec-CCCCC
Q 048114 207 WRRCPNCKIF------VEKKEGCRYMRCS-SNPQL 234 (234)
Q Consensus 207 ~k~CP~C~~~------i~k~~GCnhm~C~-C~~~F 234 (234)
.=.||.|+.. |.|..|=-+++|+ ||..|
T Consensus 23 ~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~ 57 (85)
T 1wii_A 23 QFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57 (85)
T ss_dssp CCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEE
T ss_pred eEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeE
Confidence 3589999875 3356777899996 99765
No 113
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=60.31 E-value=5.3 Score=29.28 Aligned_cols=24 Identities=21% Similarity=0.560 Sum_probs=20.3
Q ss_pred cccCCCCCceeeeccCCCceEec-CCC
Q 048114 207 WRRCPNCKIFVEKKEGCRYMRCS-SNP 232 (234)
Q Consensus 207 ~k~CP~C~~~i~k~~GCnhm~C~-C~~ 232 (234)
...|+.|+..+.+.+ ++|.|. ||.
T Consensus 140 ~a~~~~~g~~m~~~~--~~~~cp~~g~ 164 (179)
T 3m7n_A 140 RALCSNCKTEMVREG--DILKCPECGR 164 (179)
T ss_dssp ECBCTTTCCBCEECS--SSEECSSSCC
T ss_pred EecccccCCceEECC--CEEECCCCCC
Confidence 369999999888866 999995 985
No 114
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=59.26 E-value=3.4 Score=29.46 Aligned_cols=32 Identities=16% Similarity=0.363 Sum_probs=22.4
Q ss_pred ecCCCCCCCCceecCCCCccCcccCccccccccc
Q 048114 135 FYCPFKDCSALLIDDGGEAIRESVCPDCNRMFCA 168 (234)
Q Consensus 135 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~ 168 (234)
..||++.|+..++..... +...|..|+..+++
T Consensus 119 ~~c~~~~cg~g~fma~h~--~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 119 RECSNPTCGAGVFLANHK--DRLYCGKCHSVYKV 150 (152)
T ss_dssp CBCCSTTSCSSSBEEECS--SCEEESSSSSCCEE
T ss_pred CcCCCccCCCceEecccC--CCcccCCCceEEEe
Confidence 479988899755544332 34889899888765
No 115
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=59.00 E-value=16 Score=22.55 Aligned_cols=35 Identities=26% Similarity=0.660 Sum_probs=25.2
Q ss_pred cccccccccCCCCCCceeeCCCCChhhHHHHHH-HH
Q 048114 47 SFICDICVEPKSTDESFSIKGCSHSYCTECMTK-YV 81 (234)
Q Consensus 47 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~-~~ 81 (234)
...|.+|-+..........+.|.-+||..|++. |-
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~ 65 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 65 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcC
Confidence 567999976432223445679999999999986 54
No 116
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=58.89 E-value=5.1 Score=23.64 Aligned_cols=15 Identities=27% Similarity=0.917 Sum_probs=12.0
Q ss_pred CCcccCCCCCceeee
Q 048114 205 ENWRRCPNCKIFVEK 219 (234)
Q Consensus 205 ~~~k~CP~C~~~i~k 219 (234)
..++.||+|+++.-|
T Consensus 4 s~mr~C~~CgvYTLk 18 (60)
T 2apo_B 4 MRMKKCPKCGLYTLK 18 (60)
T ss_dssp CCCEECTTTCCEESS
T ss_pred hhceeCCCCCCEecc
Confidence 467899999998763
No 117
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=58.53 E-value=6.1 Score=25.76 Aligned_cols=16 Identities=13% Similarity=0.762 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHhc
Q 048114 72 YCTECMTKYVASKLQE 87 (234)
Q Consensus 72 fC~~Cl~~~~~~~i~~ 87 (234)
||++||.+|+.....+
T Consensus 43 FCRNCLskWy~~aA~e 58 (105)
T 2o35_A 43 FCRNCLSNWYREAAEA 58 (105)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988765
No 118
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=57.21 E-value=28 Score=26.88 Aligned_cols=20 Identities=0% Similarity=-0.122 Sum_probs=15.6
Q ss_pred HHhccCCHHHHHHHHHHHHH
Q 048114 107 YCRDILPEDVFNRWGNALCE 126 (234)
Q Consensus 107 ~i~~~l~~~~~~~~~~~~~~ 126 (234)
.+..-++++++..|.+....
T Consensus 168 ~l~~~i~~~lL~~Yerir~~ 187 (256)
T 3na7_A 168 DLVEKTEPKIYSFYERIRRW 187 (256)
T ss_dssp HHHHTSCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHh
Confidence 45557899999999988754
No 119
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=56.82 E-value=6.3 Score=29.20 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=18.9
Q ss_pred CcccCCCCCceee-eccCCCceEe-cCCCCC
Q 048114 206 NWRRCPNCKIFVE-KKEGCRYMRC-SSNPQL 234 (234)
Q Consensus 206 ~~k~CP~C~~~i~-k~~GCnhm~C-~C~~~F 234 (234)
..+.||+|+..+. ..-.+. .+| +|++.|
T Consensus 112 ~~~~Cp~Cg~g~fma~h~dR-~~CGkC~~t~ 141 (189)
T 2xzm_9 112 QQKGCPKCGPGIFMAKHYDR-HYCGKCHLTL 141 (189)
T ss_dssp CSEECSTTCSSCEEEECSSC-EEETTTCCCB
T ss_pred ccccCCccCCCccccCccCC-CccCCceeEE
Confidence 3489999996533 344444 499 698864
No 120
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=56.57 E-value=4.3 Score=25.03 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=17.2
Q ss_pred CcccCCCCCceeeeccCCCceEecCCCCC
Q 048114 206 NWRRCPNCKIFVEKKEGCRYMRCSSNPQL 234 (234)
Q Consensus 206 ~~k~CP~C~~~i~k~~GCnhm~C~C~~~F 234 (234)
...+|..|+..+...+ +.|+||..|
T Consensus 24 ~~nRC~~CrKkvgL~g----f~CrCg~~F 48 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTG----FDCRCGNLF 48 (74)
T ss_dssp CTTBCSSSCCBCGGGC----EECTTSCEE
T ss_pred cCCcChhhCCcccccC----eecCCCCEe
Confidence 3458999999877663 566666544
No 121
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=56.00 E-value=4.4 Score=24.22 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=17.8
Q ss_pred CCcccCCCCCceeeeccCCCceEecCCCCC
Q 048114 205 ENWRRCPNCKIFVEKKEGCRYMRCSSNPQL 234 (234)
Q Consensus 205 ~~~k~CP~C~~~i~k~~GCnhm~C~C~~~F 234 (234)
....+|..|+..+... -+.|+||..|
T Consensus 13 ~~~~rC~~C~kkvgl~----~f~CrCg~~F 38 (64)
T 1wfh_A 13 QRPNRCTVCRKRVGLT----GFMCRCGTTF 38 (64)
T ss_dssp SSCCCCTTTCCCCCTT----CEECSSSCEE
T ss_pred CcCCcChhhCCccCcc----CEEeecCCEe
Confidence 3457899999887665 3666666554
No 122
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=55.65 E-value=5.8 Score=23.02 Aligned_cols=27 Identities=19% Similarity=0.528 Sum_probs=20.5
Q ss_pred CcccCCCCCceeeeccCCCceEec---CCCCC
Q 048114 206 NWRRCPNCKIFVEKKEGCRYMRCS---SNPQL 234 (234)
Q Consensus 206 ~~k~CP~C~~~i~k~~GCnhm~C~---C~~~F 234 (234)
.+-.||.|+...+-.. ..+.|. ||..|
T Consensus 9 ~iL~CP~c~~~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 9 EILACPACHAPLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp TSCCCSSSCSCEEEET--TEEEECSSSCCCEE
T ss_pred hheeCCCCCCcceecC--CEEEcCCcCCCcEE
Confidence 3468999999877666 778887 87654
No 123
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=54.61 E-value=50 Score=23.08 Aligned_cols=51 Identities=16% Similarity=0.481 Sum_probs=34.7
Q ss_pred cccccccccCCCCCCceeeCCCCChhhHHHHHHHHHH----HHhcCCccccCCCCCCCCC
Q 048114 47 SFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVAS----KLQENITSINCPVADCKGV 102 (234)
Q Consensus 47 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~----~i~~~~~~i~CP~~~C~~~ 102 (234)
...|.+|.+ ..+.+....|-..||..|+...+.. .|.....+-.|| .|...
T Consensus 63 ~d~C~vC~~---GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~--~C~~~ 117 (142)
T 2lbm_A 63 DEQCRWCAE---GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCY--ICHPE 117 (142)
T ss_dssp BCSCSSSCC---CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCT--TTCCC
T ss_pred CCeecccCC---CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEee--cccCc
Confidence 567999987 4466666789999999999977632 221123456799 66543
No 124
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=54.17 E-value=5.7 Score=25.87 Aligned_cols=16 Identities=25% Similarity=0.891 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHhc
Q 048114 72 YCTECMTKYVASKLQE 87 (234)
Q Consensus 72 fC~~Cl~~~~~~~i~~ 87 (234)
||++||.+|+..+..+
T Consensus 42 FCRNCLskWy~~aA~~ 57 (104)
T 3fyb_A 42 FCRNCLAKWLMEAATE 57 (104)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987654
No 125
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=50.86 E-value=12 Score=23.69 Aligned_cols=34 Identities=18% Similarity=0.627 Sum_probs=24.6
Q ss_pred CcccccccccCCCCCCceeeCCCCChhhHHHHHHH
Q 048114 46 TSFICDICVEPKSTDESFSIKGCSHSYCTECMTKY 80 (234)
Q Consensus 46 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~ 80 (234)
....|.||-. +..+..+...-|+-.|...||++.
T Consensus 14 ~D~~C~VC~~-~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEV-WTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCC-CCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCcccc-ccccceeccccccccccHhhcccc
Confidence 3556999953 344455555578999999999985
No 126
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=49.75 E-value=15 Score=25.67 Aligned_cols=35 Identities=9% Similarity=0.371 Sum_probs=25.7
Q ss_pred HHHHHHhcCCcccCCCCCc---eeeeccCCCceEec-CCCC
Q 048114 197 MLMTLAQKENWRRCPNCKI---FVEKKEGCRYMRCS-SNPQ 233 (234)
Q Consensus 197 ~l~~~~~~~~~k~CP~C~~---~i~k~~GCnhm~C~-C~~~ 233 (234)
.+..++ ...-.||.|+. .+.|.++=-.+.|. ||+.
T Consensus 94 ~L~~yI--~~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 132 (138)
T 1nee_A 94 RIEDYV--NKFVICHECNRPDTRIIREGRISLLKCEACGAK 132 (138)
T ss_dssp HHHHHH--THHHHHTCCSSCSSCCEEETTTTEEECSTTSCC
T ss_pred HHHHHH--hhEEECCCCCCcCcEEEEcCCeEEEEccCCCCC
Confidence 444443 34579999998 46677888899996 9985
No 127
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=49.74 E-value=2.3 Score=23.74 Aligned_cols=27 Identities=19% Similarity=0.538 Sum_probs=22.0
Q ss_pred cCcccCccccccccccCCCCCCCCCCh
Q 048114 154 IRESVCPDCNRMFCAQCKVPWHAGIRC 180 (234)
Q Consensus 154 ~~~~~C~~C~~~~C~~C~~~~H~~~~C 180 (234)
...++|..|+..+|..|....|.+++-
T Consensus 16 ~l~lfC~~~~~~iC~~C~~~~H~~H~~ 42 (50)
T 2yvr_A 16 PLVLFCESCDTLTCRDCQLNAHKDHQY 42 (50)
T ss_dssp BCCEEETTTTEEECHHHHHTTTTTCCE
T ss_pred CEEEEeCCCCEEEecccCCCcCCCCce
Confidence 345899999999999998777887653
No 128
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=49.48 E-value=5.9 Score=23.67 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=17.1
Q ss_pred CcccCCCCCceeeeccCCCceEecCCCCC
Q 048114 206 NWRRCPNCKIFVEKKEGCRYMRCSSNPQL 234 (234)
Q Consensus 206 ~~k~CP~C~~~i~k~~GCnhm~C~C~~~F 234 (234)
...+|..|+..+... -+.|+||..|
T Consensus 14 ~~~rC~~C~kkvgl~----~f~CrCg~~F 38 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVM----GFKCKCGSTF 38 (64)
T ss_dssp CSCSCTTTCCCCTTS----CEECTTSCEE
T ss_pred cCCcChhhCCccccc----CeEeecCCEe
Confidence 456899999876654 3666666654
No 129
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=48.93 E-value=6.3 Score=28.11 Aligned_cols=32 Identities=22% Similarity=0.512 Sum_probs=24.4
Q ss_pred CcccccccccCCC--CCCceeeCCCCChhhHHHH
Q 048114 46 TSFICDICVEPKS--TDESFSIKGCSHSYCTECM 77 (234)
Q Consensus 46 ~~~~C~iC~~~~~--~~~~~~~~~C~H~fC~~Cl 77 (234)
....|.+|..+|. .+.......|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 4678999999863 2334455699999999997
No 130
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=47.20 E-value=14 Score=22.17 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=21.9
Q ss_pred ecCCCCCCCCceecCCCCccCcccCccccccccc
Q 048114 135 FYCPFKDCSALLIDDGGEAIRESVCPDCNRMFCA 168 (234)
Q Consensus 135 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~ 168 (234)
+.|| +|.+.-..-. .....+.|..|+...|.
T Consensus 8 VKCp--~C~niq~VFS-hA~tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 8 VKCP--DCEHEQVIFD-HPSTIVKCIICGRTVAE 38 (66)
T ss_dssp EECT--TTCCEEEEES-SCSSCEECSSSCCEEEE
T ss_pred EECC--CCCCceEEEe-cCceEEEcccCCCEEee
Confidence 5799 9997544322 23455999999998885
No 131
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=45.75 E-value=9.2 Score=23.36 Aligned_cols=32 Identities=22% Similarity=0.453 Sum_probs=22.9
Q ss_pred ccccccccCCCCC-CceeeCCCCChhhHHHHHH
Q 048114 48 FICDICVEPKSTD-ESFSIKGCSHSYCTECMTK 79 (234)
Q Consensus 48 ~~C~iC~~~~~~~-~~~~~~~C~H~fC~~Cl~~ 79 (234)
..|.+|...|... .......||..||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 3699999888532 1223458999999999853
No 132
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=45.62 E-value=13 Score=23.50 Aligned_cols=31 Identities=23% Similarity=0.621 Sum_probs=22.1
Q ss_pred ecCCCCCCCCceecCCCCccCcccCccccccccc
Q 048114 135 FYCPFKDCSALLIDDGGEAIRESVCPDCNRMFCA 168 (234)
Q Consensus 135 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~ 168 (234)
+.|| +|...-..-. .....+.|..|+...|.
T Consensus 37 VkCp--~C~~~~~VFS-hA~t~V~C~~CgtvL~~ 67 (86)
T 3iz6_X 37 VKCQ--GCFNITTVFS-HSQTVVVCPGCQTVLCQ 67 (86)
T ss_dssp EECT--TTCCEEEEET-TCSSCCCCSSSCCCCSC
T ss_pred EECC--CCCCeeEEEe-cCCcEEEccCCCCEeec
Confidence 5899 9997544322 23455899999998885
No 133
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.45 E-value=10 Score=22.59 Aligned_cols=32 Identities=25% Similarity=0.626 Sum_probs=23.6
Q ss_pred ecCCCCCCCCceecCCCCccCcccCccccccccccCCCC
Q 048114 135 FYCPFKDCSALLIDDGGEAIRESVCPDCNRMFCAQCKVP 173 (234)
Q Consensus 135 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 173 (234)
..|..++|..... .-+.|..|+..||...+.+
T Consensus 13 ~~Cs~~~Ck~~~l-------l~f~C~~C~~~FC~~HR~~ 44 (63)
T 1x4v_A 13 NKCERAGCRQREM-------MKLTCERCSRNFCIKHRHP 44 (63)
T ss_dssp CCCCSTTCCCCCS-------SCCBCSSSCCBCCHHHHST
T ss_pred CCCCccCCCCCCc-------cceECCCCCcccCcccCCc
Confidence 4788777886521 1279999999999988654
No 134
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=45.36 E-value=14 Score=23.02 Aligned_cols=36 Identities=22% Similarity=0.668 Sum_probs=25.9
Q ss_pred CCCeecCCCCCCCCceecCCCCccCcccCccccccccccCCC
Q 048114 131 GAQKFYCPFKDCSALLIDDGGEAIRESVCPDCNRMFCAQCKV 172 (234)
Q Consensus 131 ~~~~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~ 172 (234)
+.....|. .|+..+.. -.....|..||..||..|..
T Consensus 16 d~~~~~C~--~C~~~Fs~----~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 16 DDEATHCR--QCEKEFSI----SRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CCCCCBCT--TTCCBCBT----TBCCEECTTTCCEECSGGGC
T ss_pred CccCCccc--CcCCcccC----ccccccCCCCCCEEChHHhC
Confidence 33445787 78876542 23458999999999999965
No 135
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=45.03 E-value=15 Score=22.02 Aligned_cols=49 Identities=18% Similarity=0.461 Sum_probs=31.6
Q ss_pred CCcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCC
Q 048114 45 ETSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKG 101 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~ 101 (234)
.+...|.||.+. .+++.-..|...|...|+.--+.. +- ...-.|| .|..
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~-~P--~g~W~C~--~C~~ 58 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTS-RP--GTGLRCR--SCSG 58 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCC-CC--SSSCCCT--TTTT
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCc-CC--CCCEECc--cccC
Confidence 345669999763 466666789999999998544321 11 1245788 6754
No 136
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=44.88 E-value=14 Score=22.68 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=22.5
Q ss_pred CcccCCCCCceeeeccCCCceEec-CCCCC
Q 048114 206 NWRRCPNCKIFVEKKEGCRYMRCS-SNPQL 234 (234)
Q Consensus 206 ~~k~CP~C~~~i~k~~GCnhm~C~-C~~~F 234 (234)
.-..||.|+..-.|..+=.--.|+ |++.|
T Consensus 25 ~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~ 54 (72)
T 3jyw_9 25 ARYDCSFCGKKTVKRGAAGIWTCSCCKKTV 54 (72)
T ss_dssp SCBCCSSCCSSCBSBCSSSCBCCSSSCCCC
T ss_pred cCccCCCCCCceeEecCCCeEECCCCCCEE
Confidence 446899999987777776667885 88766
No 137
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=44.13 E-value=3.9 Score=21.14 Aligned_cols=13 Identities=31% Similarity=0.851 Sum_probs=10.5
Q ss_pred CcccccccccCCC
Q 048114 46 TSFICDICVEPKS 58 (234)
Q Consensus 46 ~~~~C~iC~~~~~ 58 (234)
+.+.||+|+.++.
T Consensus 4 EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 4 EGFICPQCMKSLG 16 (34)
T ss_dssp EEEECTTTCCEES
T ss_pred cccCCcHHHHHcC
Confidence 3688999998775
No 138
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.55 E-value=8.1 Score=23.95 Aligned_cols=33 Identities=24% Similarity=0.664 Sum_probs=23.9
Q ss_pred CCcccccccccCCC--CCCceeeCCCCChhhHHHH
Q 048114 45 ETSFICDICVEPKS--TDESFSIKGCSHSYCTECM 77 (234)
Q Consensus 45 ~~~~~C~iC~~~~~--~~~~~~~~~C~H~fC~~Cl 77 (234)
+....|..|.+.+. .+.......|.|.+|.+|=
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 44677999999884 2233345699999999883
No 139
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=43.45 E-value=17 Score=23.07 Aligned_cols=32 Identities=28% Similarity=0.908 Sum_probs=24.6
Q ss_pred ecCCCCCCCCceecCCCCccCcccCccccccccccCCCC
Q 048114 135 FYCPFKDCSALLIDDGGEAIRESVCPDCNRMFCAQCKVP 173 (234)
Q Consensus 135 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 173 (234)
..|..++|..... .-+.|..|+..||...+.+
T Consensus 26 ~~C~~~~Ck~~~~-------l~f~C~~C~~~FC~~HR~~ 57 (86)
T 1wfe_A 26 YSCSFKGCTDVEL-------VAVICPYCEKNFCLRHRHQ 57 (86)
T ss_dssp EECCSTTCCCEES-------SCEECTTTCCEECGGGCST
T ss_pred CCCCCcCCCCCCc-------cceECCCCCcccccccCCc
Confidence 4688888987632 2289999999999988764
No 140
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=43.33 E-value=10 Score=24.01 Aligned_cols=27 Identities=11% Similarity=0.256 Sum_probs=18.1
Q ss_pred CCcccCCCCCceeeeccCCCceEecCCCCC
Q 048114 205 ENWRRCPNCKIFVEKKEGCRYMRCSSNPQL 234 (234)
Q Consensus 205 ~~~k~CP~C~~~i~k~~GCnhm~C~C~~~F 234 (234)
....+|..|+..+-.. +-+.|+||..|
T Consensus 23 ~~~~rC~~C~kkvgl~---~~f~CrCg~~F 49 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLA---TSFECRCGNNF 49 (85)
T ss_dssp CCCCBCSSSCCBCSSS---SCEECTTCCEE
T ss_pred ccCccchhhCCeeccc---CCeEcCCCCEe
Confidence 3457899999876553 23677777655
No 141
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=42.51 E-value=14 Score=22.48 Aligned_cols=34 Identities=21% Similarity=0.531 Sum_probs=25.4
Q ss_pred CCcccccccccCCCCCCceeeCCCCChhhHHHHH
Q 048114 45 ETSFICDICVEPKSTDESFSIKGCSHSYCTECMT 78 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~ 78 (234)
+....|.||........++..-.|...|...|+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~ 49 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVG 49 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHT
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCC
Confidence 3356799998876554677767888888888884
No 142
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=42.45 E-value=11 Score=27.05 Aligned_cols=49 Identities=27% Similarity=0.592 Sum_probs=30.6
Q ss_pred cccccccccCCCCCCceeeC--CCCChhhHHHHHHHHHHHH-hc--CCccccCCCCCCC
Q 048114 47 SFICDICVEPKSTDESFSIK--GCSHSYCTECMTKYVASKL-QE--NITSINCPVADCK 100 (234)
Q Consensus 47 ~~~C~iC~~~~~~~~~~~~~--~C~H~fC~~Cl~~~~~~~i-~~--~~~~i~CP~~~C~ 100 (234)
...|.||.+- .+.+... +|...||.+|+...+.... .+ ...+-.|- -|.
T Consensus 79 ~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy--~C~ 132 (159)
T 3a1b_A 79 QSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCY--MCG 132 (159)
T ss_dssp BSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCT--TTC
T ss_pred cceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEE--ecC
Confidence 5579999873 3434333 5888999999998874421 11 23455665 454
No 143
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=42.03 E-value=17 Score=21.61 Aligned_cols=27 Identities=22% Similarity=0.550 Sum_probs=18.9
Q ss_pred ecCCCCCCCCceecCCCCccCcccCccccccc
Q 048114 135 FYCPFKDCSALLIDDGGEAIRESVCPDCNRMF 166 (234)
Q Consensus 135 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~ 166 (234)
..|. +|+..+.... ...++|+.||+.+
T Consensus 22 Y~C~--~Cg~~~~l~~---~~~iRC~~CG~RI 48 (63)
T 3h0g_L 22 YLCA--DCGARNTIQA---KEVIRCRECGHRV 48 (63)
T ss_dssp CBCS--SSCCBCCCCS---SSCCCCSSSCCCC
T ss_pred EECC--CCCCeeecCC---CCceECCCCCcEE
Confidence 4688 8887765543 2448999998764
No 144
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=41.30 E-value=9.2 Score=26.32 Aligned_cols=28 Identities=29% Similarity=0.724 Sum_probs=18.5
Q ss_pred eecCCCCCCCCceecCCCCccCcccCccccccc
Q 048114 134 KFYCPFKDCSALLIDDGGEAIRESVCPDCNRMF 166 (234)
Q Consensus 134 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~ 166 (234)
.-.|| .|..-+..... ..+.||.|+.+|
T Consensus 27 lP~CP--~C~seytYeDg---~l~vCPeC~hEW 54 (138)
T 2akl_A 27 LPPCP--QCNSEYTYEDG---ALLVCPECAHEW 54 (138)
T ss_dssp SCCCT--TTCCCCCEECS---SSEEETTTTEEE
T ss_pred CCCCC--CCCCcceEecC---CeEECCcccccc
Confidence 34688 78865554432 338888888875
No 145
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=41.27 E-value=10 Score=24.22 Aligned_cols=34 Identities=15% Similarity=0.425 Sum_probs=24.4
Q ss_pred cccccccccCCCCCC-ceeeCCCCChhhHHHHHHH
Q 048114 47 SFICDICVEPKSTDE-SFSIKGCSHSYCTECMTKY 80 (234)
Q Consensus 47 ~~~C~iC~~~~~~~~-~~~~~~C~H~fC~~Cl~~~ 80 (234)
...|.+|...|.... ......||..||..|....
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 456999998885322 2334589999999998643
No 146
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.45 E-value=20 Score=21.27 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=21.9
Q ss_pred ecCCCCCCCCceecCCCCccCcccCccccccccc
Q 048114 135 FYCPFKDCSALLIDDGGEAIRESVCPDCNRMFCA 168 (234)
Q Consensus 135 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~ 168 (234)
+.|| +|...-..-. .....+.|..|+...|.
T Consensus 16 VkCp--~C~~~q~VFS-ha~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 16 VKCI--DCGNEQIVFS-HPATKVRCLICGATLVE 46 (63)
T ss_dssp EECS--SSCCEEEEES-SCSSCEECSSSCCEEEE
T ss_pred EECC--CCCCeeEEEe-cCCeEEEccCcCCEEec
Confidence 5899 9997544322 23455999999998885
No 147
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=39.97 E-value=31 Score=23.11 Aligned_cols=26 Identities=27% Similarity=0.735 Sum_probs=17.9
Q ss_pred eecCCCCCCCCceecCCCCccCcc-cCcccccc
Q 048114 134 KFYCPFKDCSALLIDDGGEAIRES-VCPDCNRM 165 (234)
Q Consensus 134 ~~~Cp~~~C~~~~~~~~~~~~~~~-~C~~C~~~ 165 (234)
..+|. +|+..+..+. ... .||.|+..
T Consensus 73 ~~~C~--~CG~~~e~~~----~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 73 ELECK--DCSHVFKPNA----LDYGVCEKCHSK 99 (119)
T ss_dssp EEECS--SSSCEECSCC----STTCCCSSSSSC
T ss_pred eEEcC--CCCCEEeCCC----CCCCcCccccCC
Confidence 45899 8998876532 235 78888654
No 148
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=38.96 E-value=4.2 Score=22.42 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=20.3
Q ss_pred CcccCccccccccccCC-CCCCCCCC
Q 048114 155 RESVCPDCNRMFCAQCK-VPWHAGIR 179 (234)
Q Consensus 155 ~~~~C~~C~~~~C~~C~-~~~H~~~~ 179 (234)
..++|..|+..+|..|. ...|.+++
T Consensus 17 l~lfC~~d~~~iC~~C~~~~~H~~H~ 42 (48)
T 3ddt_A 17 INIYCLTCEVPTCSMCKVFGIHKACE 42 (48)
T ss_dssp CCEEETTTTEEECHHHHHHSTTTTSC
T ss_pred ccEEcCCCCeeEcccccCCCcCCCCc
Confidence 45899999999999997 44687764
No 149
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=38.55 E-value=6.1 Score=22.27 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=21.4
Q ss_pred cCcccCccccccccccCCC-CCCCCCC
Q 048114 154 IRESVCPDCNRMFCAQCKV-PWHAGIR 179 (234)
Q Consensus 154 ~~~~~C~~C~~~~C~~C~~-~~H~~~~ 179 (234)
...++|..|+..+|..|.. ..|.+++
T Consensus 17 ~l~lfC~~d~~~iC~~C~~~~~H~~H~ 43 (53)
T 2did_A 17 ALSLFCYEDQEAVCLICAISHTHRAHT 43 (53)
T ss_dssp BCCEEESSSCSEECHHHHTSSTTTTSC
T ss_pred eeeEEeCCCCeEEeccccCCCCCCCCc
Confidence 3458999999999999986 6788765
No 150
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.28 E-value=18 Score=22.64 Aligned_cols=32 Identities=28% Similarity=0.724 Sum_probs=23.2
Q ss_pred ecCCCCCCCCceecCCCCccCcccCccccccccccCCC
Q 048114 135 FYCPFKDCSALLIDDGGEAIRESVCPDCNRMFCAQCKV 172 (234)
Q Consensus 135 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~ 172 (234)
..|. .|...+.. -.....|..||..||..|-.
T Consensus 15 ~~C~--~C~~~F~~----~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 15 GNCT--GCSATFSV----LKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp SSCS--SSCCCCCS----SSCCEECSSSCCEECTTTSC
T ss_pred CcCc--CcCCcccc----chhhhhhcCCCcEEChhhcC
Confidence 4677 67765432 13458999999999999965
No 151
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=37.50 E-value=16 Score=23.67 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=17.0
Q ss_pred ccCCCCCceeeeccCCCceEe-cCCC
Q 048114 208 RRCPNCKIFVEKKEGCRYMRC-SSNP 232 (234)
Q Consensus 208 k~CP~C~~~i~k~~GCnhm~C-~C~~ 232 (234)
..||.|+...... ...+| +|||
T Consensus 17 ~lCrRCG~~sfH~---qK~~CgkCGY 39 (97)
T 2zkr_2 17 TLCRRCGSKAYHL---QKSTCGKCGY 39 (97)
T ss_dssp ECCTTTCSSCEET---TSCCBTTTCT
T ss_pred CcCCCCCCccCcC---ccccCcccCC
Confidence 5899999977644 46799 5987
No 152
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=37.17 E-value=19 Score=22.53 Aligned_cols=32 Identities=22% Similarity=0.784 Sum_probs=23.3
Q ss_pred ecCCCCCCCCceecCCCCccCcccCccccccccccCCC
Q 048114 135 FYCPFKDCSALLIDDGGEAIRESVCPDCNRMFCAQCKV 172 (234)
Q Consensus 135 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~ 172 (234)
..|. .|...+..- .....|..||..||..|..
T Consensus 22 ~~C~--~C~~~Fs~~----~RrHHCR~CG~v~C~~Cs~ 53 (84)
T 1z2q_A 22 PACN--GCGCVFTTT----VRRHHCRNCGYVLCGDCSR 53 (84)
T ss_dssp CBCT--TTCCBCCTT----SCCEECTTTCCEECTGGGC
T ss_pred CCCc--CcCCccccc----hhcccccCCCcEEChHHhC
Confidence 4577 677655331 3458999999999999965
No 153
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=37.16 E-value=21 Score=22.37 Aligned_cols=31 Identities=19% Similarity=0.637 Sum_probs=22.1
Q ss_pred ecCCCCCCCCceecCCCCccCcccCccccccccc
Q 048114 135 FYCPFKDCSALLIDDGGEAIRESVCPDCNRMFCA 168 (234)
Q Consensus 135 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~ 168 (234)
+.|| +|...-..-. .....+.|..|+...|.
T Consensus 33 VkCp--~C~n~q~VFS-hA~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 33 VKCA--QCQNIQMIFS-NAQSTIICEKCSAILCK 63 (81)
T ss_dssp EECS--SSCCEEEEET-TCSSCEECSSSCCEEEE
T ss_pred eECC--CCCCeeEEEe-cCccEEEccCCCCEEee
Confidence 4799 9997544422 23455999999998875
No 154
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=37.06 E-value=14 Score=21.71 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=17.4
Q ss_pred cCCcccCCCCCceeeeccCCCceEec-CCC
Q 048114 204 KENWRRCPNCKIFVEKKEGCRYMRCS-SNP 232 (234)
Q Consensus 204 ~~~~k~CP~C~~~i~k~~GCnhm~C~-C~~ 232 (234)
..++-.||+||.+.. .|..|. ||+
T Consensus 27 ~p~l~~c~~cGe~~~-----~H~vc~~CG~ 51 (60)
T 3v2d_5 27 PPTLVPCPECKAMKP-----PHTVCPECGY 51 (60)
T ss_dssp CCCCEECTTTCCEEC-----TTSCCTTTCE
T ss_pred CCceeECCCCCCeec-----ceEEcCCCCc
Confidence 356789999999764 477774 774
No 155
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=37.01 E-value=16 Score=22.24 Aligned_cols=13 Identities=31% Similarity=0.629 Sum_probs=8.8
Q ss_pred CCcccCCCCCceee
Q 048114 205 ENWRRCPNCKIFVE 218 (234)
Q Consensus 205 ~~~k~CP~C~~~i~ 218 (234)
..|+.|| ||..|+
T Consensus 19 ~kT~~C~-CG~~~~ 31 (71)
T 1gh9_A 19 AKTRKCV-CGRTVN 31 (71)
T ss_dssp CSEEEET-TTEEEE
T ss_pred CcEEECC-CCCeee
Confidence 4567777 777665
No 156
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=37.00 E-value=16 Score=21.44 Aligned_cols=37 Identities=19% Similarity=0.514 Sum_probs=24.7
Q ss_pred CCcccccccccCCCCCCceeeCCCCChhh-HHHHHHHH
Q 048114 45 ETSFICDICVEPKSTDESFSIKGCSHSYC-TECMTKYV 81 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC-~~Cl~~~~ 81 (234)
++...|.||............+.|+-.|| ..|.+.|-
T Consensus 9 ~~~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~Hk 46 (59)
T 1x4s_A 9 EPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTHG 46 (59)
T ss_dssp CCCEEECSSCTTCCEEECEECTTTCCEESSHHHHHHHC
T ss_pred CCCCcCcCCCCCcCCCccccCcCCCCCccChHHHHHHh
Confidence 33567999985211113456679999999 59998763
No 157
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=35.97 E-value=15 Score=24.76 Aligned_cols=30 Identities=23% Similarity=0.501 Sum_probs=22.2
Q ss_pred CCcccCCCCCceeeeccCCCceEec-CCCCC
Q 048114 205 ENWRRCPNCKIFVEKKEGCRYMRCS-SNPQL 234 (234)
Q Consensus 205 ~~~k~CP~C~~~i~k~~GCnhm~C~-C~~~F 234 (234)
..-..||.|+..-.|..+=.--.|+ |++.|
T Consensus 58 ~akytCPfCGk~~vKR~avGIW~C~~Cgk~f 88 (116)
T 3cc2_Z 58 NEDHACPNCGEDRVDRQGTGIWQCSYCDYKF 88 (116)
T ss_dssp HSCEECSSSCCEEEEEEETTEEEETTTCCEE
T ss_pred ccCCcCCCCCCceeEecCceeEECCCCCCEE
Confidence 4457999999966666655677885 88765
No 158
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=35.71 E-value=47 Score=22.81 Aligned_cols=50 Identities=18% Similarity=0.519 Sum_probs=32.8
Q ss_pred cccccccccCCCCCCceeeCCCCChhhHHHHHHHHH----HHHhcCCccccCCCCCCCC
Q 048114 47 SFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVA----SKLQENITSINCPVADCKG 101 (234)
Q Consensus 47 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~----~~i~~~~~~i~CP~~~C~~ 101 (234)
...|.||.+ ..+.+.-..|-..||.+|+...+. ..+.+...+-.|+ .|..
T Consensus 57 ~~~C~vC~d---GG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~--~C~~ 110 (129)
T 3ql9_A 57 DEQCRWCAE---GGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCY--ICHP 110 (129)
T ss_dssp BSSCTTTCC---CSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCT--TTCC
T ss_pred CCcCeecCC---CCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcC--CcCC
Confidence 446999986 335555568889999999998742 2332223466788 5643
No 159
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=35.71 E-value=26 Score=19.34 Aligned_cols=31 Identities=16% Similarity=0.532 Sum_probs=22.8
Q ss_pred cccccccCCCCCCceeeCCCCChhhHHHHHH
Q 048114 49 ICDICVEPKSTDESFSIKGCSHSYCTECMTK 79 (234)
Q Consensus 49 ~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~ 79 (234)
.|.||...-..++++.-..|...|...|+.-
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p 32 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRP 32 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCT
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCC
Confidence 4889987544446666678888899999854
No 160
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=35.53 E-value=5.3 Score=24.24 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=23.7
Q ss_pred cCcccCccccccccccCCCCCCCCCChhh
Q 048114 154 IRESVCPDCNRMFCAQCKVPWHAGIRCAE 182 (234)
Q Consensus 154 ~~~~~C~~C~~~~C~~C~~~~H~~~~C~~ 182 (234)
...++|..|+..+|..|....|.+++-..
T Consensus 27 ~l~lfC~~d~~~iC~~C~~~~H~~H~~~~ 55 (72)
T 2csv_A 27 TMELFCQTDQTCICYLCMFQEHKNHSTVT 55 (72)
T ss_dssp BCCEEESSSCCEECHHHHHTTTSSSCEEE
T ss_pred ceEEEeCCCCeEEccccCCCCCCCCCEec
Confidence 34589999999999999887888877544
No 161
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=35.16 E-value=16 Score=24.90 Aligned_cols=32 Identities=28% Similarity=0.795 Sum_probs=23.6
Q ss_pred ecCCCCCCCCceecCCCCccCcccCccccccccccCCC
Q 048114 135 FYCPFKDCSALLIDDGGEAIRESVCPDCNRMFCAQCKV 172 (234)
Q Consensus 135 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~ 172 (234)
..|. .|...|.. -.....|..||..||..|..
T Consensus 70 ~~C~--~C~~~Fs~----~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 70 QNCM--ACGKGFSV----TVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CBCT--TTCCBCCS----SSCCEECTTTCCEECGGGSC
T ss_pred CCCc--CcCCcccc----ccccccCCCCCeEEChHHhC
Confidence 3577 77765542 23458999999999999976
No 162
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=35.15 E-value=15 Score=21.65 Aligned_cols=15 Identities=33% Similarity=0.786 Sum_probs=11.6
Q ss_pred CCcccCCCCCceeee
Q 048114 205 ENWRRCPNCKIFVEK 219 (234)
Q Consensus 205 ~~~k~CP~C~~~i~k 219 (234)
..++.||+|+++.-+
T Consensus 3 s~mr~C~~Cg~YTLk 17 (60)
T 2aus_D 3 FRIRKCPKCGRYTLK 17 (60)
T ss_dssp -CCEECTTTCCEESS
T ss_pred ccceECCCCCCEEcc
Confidence 457899999998764
No 163
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=34.13 E-value=6 Score=24.72 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=22.8
Q ss_pred cCcccCccccccccccCCC-CCCCCCChh
Q 048114 154 IRESVCPDCNRMFCAQCKV-PWHAGIRCA 181 (234)
Q Consensus 154 ~~~~~C~~C~~~~C~~C~~-~~H~~~~C~ 181 (234)
...++|..|+..+|..|.. ..|.+++-.
T Consensus 28 ~l~lfC~~d~~~iC~~C~~~~~H~~H~~~ 56 (84)
T 2dja_A 28 KVNMYCVSDDQLICALCKLVGRHRDHQVA 56 (84)
T ss_dssp CCCEEETTTTEEECHHHHHTSTTTTCCBC
T ss_pred cccEEcCCCCceEcccCcCCCCCCCCCcc
Confidence 3458999999999999987 688887644
No 164
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.88 E-value=8 Score=22.45 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=21.4
Q ss_pred cCcccCccccccccccCCC-CCCCCCC
Q 048114 154 IRESVCPDCNRMFCAQCKV-PWHAGIR 179 (234)
Q Consensus 154 ~~~~~C~~C~~~~C~~C~~-~~H~~~~ 179 (234)
...++|..++..+|..|.. ..|.+++
T Consensus 23 ~L~lfC~~d~~~iC~~C~~s~eH~~H~ 49 (59)
T 2yrg_A 23 KLLLFCQEDGKVICWLCERSQEHRGHH 49 (59)
T ss_dssp BCCEEETTTCSEECHHHHTSTTTTTCC
T ss_pred eeeeecCCCCcEEecccCCCCcCCCCc
Confidence 3458999999999999987 6788765
No 165
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=33.79 E-value=26 Score=21.92 Aligned_cols=31 Identities=23% Similarity=0.648 Sum_probs=21.7
Q ss_pred ecCCCCCCCCceecCCCCccCcccCccccccccc
Q 048114 135 FYCPFKDCSALLIDDGGEAIRESVCPDCNRMFCA 168 (234)
Q Consensus 135 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~ 168 (234)
+.|| +|...-..-. .....+.|..|+...|.
T Consensus 35 VkCp--~C~~~q~VFS-ha~t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 35 VKCP--GCLNITTVFS-HAQTAVTCESCSTILCT 65 (82)
T ss_dssp EECT--TSCSCEEEES-BCSSCCCCSSSCCCCEE
T ss_pred EECC--CCCCeeEEEe-cCCeEEEccccCCEEec
Confidence 5899 9997544322 23455899999998875
No 166
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=33.59 E-value=21 Score=18.94 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=12.0
Q ss_pred cCCcccCCCCCceeee
Q 048114 204 KENWRRCPNCKIFVEK 219 (234)
Q Consensus 204 ~~~~k~CP~C~~~i~k 219 (234)
......||+|+..|.-
T Consensus 6 ~~~~~~C~~C~~~i~~ 21 (39)
T 2i5o_A 6 AEDQVPCEKCGSLVPV 21 (39)
T ss_dssp CCCEEECTTTCCEEEG
T ss_pred cCCCcccccccCcCCc
Confidence 3455789999998763
No 167
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.53 E-value=15 Score=23.11 Aligned_cols=30 Identities=17% Similarity=0.381 Sum_probs=21.8
Q ss_pred CCcccCCCCCceeeeccCCCceEec-CCCCC
Q 048114 205 ENWRRCPNCKIFVEKKEGCRYMRCS-SNPQL 234 (234)
Q Consensus 205 ~~~k~CP~C~~~i~k~~GCnhm~C~-C~~~F 234 (234)
..-..||.|+..-.|..+=.--.|+ |++.|
T Consensus 33 ~~ky~CpfCGk~~vkR~a~GIW~C~kCg~~~ 63 (83)
T 3j21_i 33 RQKHTCPVCGRKAVKRISTGIWQCQKCGATF 63 (83)
T ss_dssp HSCBCCSSSCSSCEEEEETTEEEETTTCCEE
T ss_pred hcccCCCCCCCceeEecCcCeEEcCCCCCEE
Confidence 3446899999977776666666885 88754
No 168
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=32.99 E-value=29 Score=18.03 Aligned_cols=17 Identities=29% Similarity=0.698 Sum_probs=13.9
Q ss_pred ccccCCCCCCCCCChhh
Q 048114 166 FCAQCKVPWHAGIRCAE 182 (234)
Q Consensus 166 ~C~~C~~~~H~~~~C~~ 182 (234)
.|++|.+..|....|..
T Consensus 2 ~C~~Cg~~GH~a~~C~~ 18 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQ 18 (39)
T ss_dssp BCTTTCCBSSCTTTCCS
T ss_pred eeeccCCCCcccccCCC
Confidence 48889888998888874
No 169
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=32.94 E-value=49 Score=21.32 Aligned_cols=41 Identities=12% Similarity=0.282 Sum_probs=25.2
Q ss_pred CcccccccccCCCCCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCC
Q 048114 46 TSFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLE 104 (234)
Q Consensus 46 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 104 (234)
..+.|++|...|.. ..=|..++... .+..++.|+ .|+..+.
T Consensus 6 ~~~~C~~C~~~f~~--------------~~~l~~H~~~h--~~~~~~~C~--~C~~~f~ 46 (124)
T 2dlq_A 6 SGVECPTCHKKFLS--------------KYYLKVHNRKH--TGEKPFECP--KCGKCYF 46 (124)
T ss_dssp SSCCCTTTCCCCSS--------------HHHHHHHHHHH--SSCCSCBCT--TTCCBCS
T ss_pred CCCCCCCCCCcCCC--------------HHHHHHHHHhC--CCCCCeECC--CCCchhc
Confidence 46789999766531 12245555433 344578898 7887664
No 170
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=32.63 E-value=19 Score=25.41 Aligned_cols=27 Identities=19% Similarity=0.673 Sum_probs=21.8
Q ss_pred cccCCCCCc---eeeeccCCCceEec-CCCC
Q 048114 207 WRRCPNCKI---FVEKKEGCRYMRCS-SNPQ 233 (234)
Q Consensus 207 ~k~CP~C~~---~i~k~~GCnhm~C~-C~~~ 233 (234)
.-.||.|+. .+.|.++=-.+.|. ||+.
T Consensus 104 yVlC~~C~sPdT~L~k~~r~~~l~C~ACGa~ 134 (148)
T 2d74_B 104 YVICPVCGSPDTKIIKRDRFHFLKCEACGAE 134 (148)
T ss_dssp HSSCSSSCCTTCCCCBSSSSBCCCCSSSCCC
T ss_pred EEECCCCCCcCcEEEEeCCEEEEEecCCCCC
Confidence 479999998 46677788889996 9975
No 171
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.49 E-value=38 Score=20.50 Aligned_cols=36 Identities=19% Similarity=0.544 Sum_probs=25.7
Q ss_pred cccccccccCCCCCCceeeCCCCChhhHHHHHHHHH
Q 048114 47 SFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVA 82 (234)
Q Consensus 47 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~ 82 (234)
=+.|..|...+.....+.+..=+..||..|..+.+.
T Consensus 41 CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~ 76 (81)
T 1x6a_A 41 CFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVS 76 (81)
T ss_dssp SCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHC
T ss_pred cCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhc
Confidence 578999988886444454335578899999977663
No 172
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=32.20 E-value=23 Score=29.35 Aligned_cols=32 Identities=28% Similarity=0.754 Sum_probs=24.3
Q ss_pred cccccccccCCCCCCceeeC--CCCChhhHHHHHHHH
Q 048114 47 SFICDICVEPKSTDESFSIK--GCSHSYCTECMTKYV 81 (234)
Q Consensus 47 ~~~C~iC~~~~~~~~~~~~~--~C~H~fC~~Cl~~~~ 81 (234)
...|.+|.+- .+.+... .|...||.+|+..++
T Consensus 93 ~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 93 QSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLV 126 (386)
T ss_dssp BCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHT
T ss_pred cccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhc
Confidence 4578888763 3445444 788999999999988
No 173
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=31.75 E-value=7.5 Score=22.77 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=22.1
Q ss_pred cCcccCccccccccccCCC-CCCCCCChh
Q 048114 154 IRESVCPDCNRMFCAQCKV-PWHAGIRCA 181 (234)
Q Consensus 154 ~~~~~C~~C~~~~C~~C~~-~~H~~~~C~ 181 (234)
...++|..|+..+|..|.. ..|.+++-.
T Consensus 18 ~l~lfC~~d~~~iC~~C~~~~~H~~H~~~ 46 (64)
T 2d8u_A 18 KINIYCLTCEVPTCSMCKVFGIHKACEVA 46 (64)
T ss_dssp CCCSEESSSCCCCCSHHHHSSSTTSSCEE
T ss_pred ccceEcCcCCceeCccccCCCcCCCCCee
Confidence 3458999999999999975 478877543
No 174
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=31.59 E-value=27 Score=27.24 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=20.5
Q ss_pred cccCCCCCceeee--ccCCCceEec-CCC
Q 048114 207 WRRCPNCKIFVEK--KEGCRYMRCS-SNP 232 (234)
Q Consensus 207 ~k~CP~C~~~i~k--~~GCnhm~C~-C~~ 232 (234)
-++||.|+..|++ -+|=+-..|. |+.
T Consensus 235 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 235 GLPCPACGRPVERRVVAGRGTHFCPTCQG 263 (266)
T ss_dssp TSBCTTTCCBCEEEESSSCEEEECTTTTT
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 4799999999997 4677777884 764
No 175
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=31.55 E-value=20 Score=28.18 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=19.4
Q ss_pred cccCCCCCceeee--ccCCCceEec-CC
Q 048114 207 WRRCPNCKIFVEK--KEGCRYMRCS-SN 231 (234)
Q Consensus 207 ~k~CP~C~~~i~k--~~GCnhm~C~-C~ 231 (234)
-++||.|+..|+| -+|=+-..|. |+
T Consensus 245 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 245 GNPCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred cCCCCCCCCeEEEEEECCCCeEECCCCC
Confidence 3799999999997 4676677773 75
No 176
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=31.21 E-value=20 Score=27.91 Aligned_cols=24 Identities=21% Similarity=0.580 Sum_probs=18.8
Q ss_pred ccCCCCCceeee--ccCCCceEec-CC
Q 048114 208 RRCPNCKIFVEK--KEGCRYMRCS-SN 231 (234)
Q Consensus 208 k~CP~C~~~i~k--~~GCnhm~C~-C~ 231 (234)
++||.|+..|++ -+|=.-..|. |+
T Consensus 235 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 235 EPCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeEEEEECCCCeEECCCCC
Confidence 699999999987 4676777773 75
No 177
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=30.47 E-value=37 Score=20.92 Aligned_cols=39 Identities=23% Similarity=0.549 Sum_probs=26.4
Q ss_pred ecCCCCCCCCceecCCCCccCcccCccccccccccCCCCCCCCCChhh
Q 048114 135 FYCPFKDCSALLIDDGGEAIRESVCPDCNRMFCAQCKVPWHAGIRCAE 182 (234)
Q Consensus 135 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~ 182 (234)
..|...+|...-. .-+.|..|+..||...+.+. .+.|..
T Consensus 15 ~~Cs~~~C~~~df-------lpf~C~~C~~~FC~~HR~~e--~H~C~~ 53 (75)
T 1wys_A 15 QHCQVQHCRQRDF-------LPFVCDGCSGIFCLEHRSKD--SHGCSE 53 (75)
T ss_dssp CCCSCTTTCCCSC-------CCEECTTTCCEECSTTCSSG--GGTCCC
T ss_pred CCcCcccCCCccc-------eeeECcccCcCcCcccCCcc--ccCCCC
Confidence 3677777876521 22899999999999887641 235554
No 178
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=30.31 E-value=78 Score=20.84 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=31.0
Q ss_pred CCCCCHHHHhccCCH------H-HHHHHHHHHHHHHHhCCCe-----ecCCCCCCCCceecCCCCccCcccCccccccc
Q 048114 100 KGVLEPEYCRDILPE------D-VFNRWGNALCEAVILGAQK-----FYCPFKDCSALLIDDGGEAIRESVCPDCNRMF 166 (234)
Q Consensus 100 ~~~l~~~~i~~~l~~------~-~~~~~~~~~~~~~~~~~~~-----~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~ 166 (234)
...++..+|...+.- + +++.++..... ....... ..|- +|++.| .+. ......||.|+..+
T Consensus 22 ~~plta~ei~~~l~i~~~~~ke~Vy~hLeHIaks-l~r~g~~L~v~p~~C~--~CG~~F-~~~--~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 22 EGDYSPSELARILDMRGKGSKKVILEDLKVISKI-AKREGMVLLIKPAQCR--KCGFVF-KAE--INIPSRCPKCKSEW 94 (105)
T ss_dssp TSCBCTTHHHHSSCCCSSCCHHHHHHHHHHHHHH-HTTTTEEEEECCCBBT--TTCCBC-CCC--SSCCSSCSSSCCCC
T ss_pred cCCCCHHHHHHHhCCCCCChHHHHHHHHHHHHHH-HhcCCcEEEEECcChh--hCcCee-ccc--CCCCCCCcCCCCCc
Confidence 345677777776543 3 34433333222 2122211 2677 899886 221 12227888887653
No 179
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=30.30 E-value=16 Score=22.11 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=11.8
Q ss_pred CCcccCCCCCceee
Q 048114 205 ENWRRCPNCKIFVE 218 (234)
Q Consensus 205 ~~~k~CP~C~~~i~ 218 (234)
...+.||.|+..+.
T Consensus 7 ~~~~~CP~Cgkp~~ 20 (68)
T 1lv3_A 7 TITVNCPTCGKTVV 20 (68)
T ss_dssp CCEEECTTTCCEEE
T ss_pred CCcCcCCCCCCccc
Confidence 45689999999986
No 180
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.28 E-value=24 Score=19.99 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=16.0
Q ss_pred CCcccCCCCCceeeeccCCCceEe-cCCCC
Q 048114 205 ENWRRCPNCKIFVEKKEGCRYMRC-SSNPQ 233 (234)
Q Consensus 205 ~~~k~CP~C~~~i~k~~GCnhm~C-~C~~~ 233 (234)
...+.||.|+..+ +=.--.| +||+.
T Consensus 12 ~~k~iCpkC~a~~----~~gaw~CrKCG~~ 37 (51)
T 3j21_g 12 FKKYVCLRCGATN----PWGAKKCRKCGYK 37 (51)
T ss_dssp SSEEECTTTCCEE----CTTCSSCSSSSSC
T ss_pred hCCccCCCCCCcC----CCCceecCCCCCc
Confidence 4568999999872 2223456 37764
No 181
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=30.25 E-value=39 Score=26.29 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=23.7
Q ss_pred CCcccCCCCCceeeeccCCCceEec-CCCC
Q 048114 205 ENWRRCPNCKIFVEKKEGCRYMRCS-SNPQ 233 (234)
Q Consensus 205 ~~~k~CP~C~~~i~k~~GCnhm~C~-C~~~ 233 (234)
...+.||.|+...+...+=-.+.|. ||..
T Consensus 105 ~~~~fC~~CG~~~~~~~~~~~~~C~~C~~~ 134 (269)
T 1vk6_A 105 RSHKYCGYCGHEMYPSKTEWAMLCSHCRER 134 (269)
T ss_dssp HTTSBCTTTCCBEEECSSSSCEEESSSSCE
T ss_pred hcCCccccCCCcCccCCCceeeeCCCCCCE
Confidence 4568999999999887777889995 8863
No 182
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=30.01 E-value=24 Score=27.57 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=20.3
Q ss_pred cccCCCCCceeee--ccCCCceEec-CCC
Q 048114 207 WRRCPNCKIFVEK--KEGCRYMRCS-SNP 232 (234)
Q Consensus 207 ~k~CP~C~~~i~k--~~GCnhm~C~-C~~ 232 (234)
-++||.|+..|++ -+|=.-..|. |+.
T Consensus 242 G~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 242 GEKCSRCGAEIQKIKVAGRGTHFCPVCQQ 270 (271)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTSC
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 3799999999997 4677777784 764
No 183
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=29.90 E-value=26 Score=16.43 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=14.6
Q ss_pred cccccCCCCCCCCCChhh
Q 048114 165 MFCAQCKVPWHAGIRCAE 182 (234)
Q Consensus 165 ~~C~~C~~~~H~~~~C~~ 182 (234)
..|+.|++.-|....|.+
T Consensus 3 ~~Cf~CG~~GH~ardC~~ 20 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKE 20 (26)
T ss_dssp CBCTTTCCBSSCTTTTTC
T ss_pred CeeEeCCCCCcccccCCC
Confidence 458889998999888874
No 184
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=29.53 E-value=17 Score=25.44 Aligned_cols=28 Identities=25% Similarity=0.663 Sum_probs=18.9
Q ss_pred CcccCCCCCc---eeeeccCCCceEec-CCCC
Q 048114 206 NWRRCPNCKI---FVEKKEGCRYMRCS-SNPQ 233 (234)
Q Consensus 206 ~~k~CP~C~~---~i~k~~GCnhm~C~-C~~~ 233 (234)
..-.||.|+. .+.|.++=-.+.|. ||+.
T Consensus 102 ~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 133 (139)
T 3cw2_K 102 AYVECSTCKSLDTILKKEKKSWYIVCLACGAQ 133 (139)
T ss_dssp CCSSCCSSSSSCCCSCSSCSTTTSSCCC----
T ss_pred HeeECCCCCCcCcEEEEeCCeEEEEecCCCCC
Confidence 4468999998 45567788889996 9974
No 185
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=29.45 E-value=12 Score=28.68 Aligned_cols=33 Identities=24% Similarity=0.645 Sum_probs=18.7
Q ss_pred eecCCCCCCCCc-e-ecCCCCccCcccCccccccccc
Q 048114 134 KFYCPFKDCSAL-L-IDDGGEAIRESVCPDCNRMFCA 168 (234)
Q Consensus 134 ~~~Cp~~~C~~~-~-~~~~~~~~~~~~C~~C~~~~C~ 168 (234)
..||| .|+.. + ..........+.|+.|+..|=.
T Consensus 34 n~yCP--nCG~~~l~~f~nN~PVaDF~C~~C~EeyEL 68 (257)
T 4esj_A 34 QSYCP--NCGNNPLNHFENNRPVADFYCNHCSEEFEL 68 (257)
T ss_dssp HCCCT--TTCCSSCEEC----CCCEEECTTTCCEEEE
T ss_pred CCcCC--CCCChhhhhccCCCcccccccCCcchhhee
Confidence 35899 88874 2 2233333445889888766533
No 186
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=29.40 E-value=26 Score=27.37 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=19.3
Q ss_pred cccCCCCCceeee--ccCCCceEec-CC
Q 048114 207 WRRCPNCKIFVEK--KEGCRYMRCS-SN 231 (234)
Q Consensus 207 ~k~CP~C~~~i~k--~~GCnhm~C~-C~ 231 (234)
-++||.|+..|++ -+|=+-..|. |+
T Consensus 240 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 240 GEPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 4799999999997 4576667773 75
No 187
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=29.07 E-value=39 Score=20.53 Aligned_cols=31 Identities=19% Similarity=0.633 Sum_probs=23.8
Q ss_pred cccccccccCCCCCCceeeCCCCChhhHHHHH
Q 048114 47 SFICDICVEPKSTDESFSIKGCSHSYCTECMT 78 (234)
Q Consensus 47 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~ 78 (234)
...| ||........++....|..-|...|+.
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvg 46 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVG 46 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEc
Confidence 5678 898877655677777888888888885
No 188
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=28.81 E-value=37 Score=20.10 Aligned_cols=34 Identities=18% Similarity=0.575 Sum_probs=23.5
Q ss_pred CCcccccccccCCCCC-CceeeC-CCCChhhHHHHH
Q 048114 45 ETSFICDICVEPKSTD-ESFSIK-GCSHSYCTECMT 78 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~~-~~~~~~-~C~H~fC~~Cl~ 78 (234)
++...|++|..++..+ .++... .|.--|...|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 4467799999987543 455555 788889999985
No 189
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=28.13 E-value=20 Score=23.08 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=21.2
Q ss_pred CcccCCCCCceeeeccCCCceEec-CCCCC
Q 048114 206 NWRRCPNCKIFVEKKEGCRYMRCS-SNPQL 234 (234)
Q Consensus 206 ~~k~CP~C~~~i~k~~GCnhm~C~-C~~~F 234 (234)
.-..||.|+..-.|..+=.--.|+ |++.|
T Consensus 35 ~ky~CpfCgk~~vkR~a~GIW~C~~Cg~~~ 64 (92)
T 3iz5_m 35 SKYFCEFCGKFAVKRKAVGIWGCKDCGKVK 64 (92)
T ss_dssp SCBCCTTTCSSCBEEEETTEEECSSSCCEE
T ss_pred ccccCcccCCCeeEecCcceEEcCCCCCEE
Confidence 345899999977776666666885 87754
No 190
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=27.53 E-value=26 Score=23.74 Aligned_cols=33 Identities=30% Similarity=0.831 Sum_probs=23.7
Q ss_pred ecCCCCCCCCceecCCCCccCcccCccccccccccCCCC
Q 048114 135 FYCPFKDCSALLIDDGGEAIRESVCPDCNRMFCAQCKVP 173 (234)
Q Consensus 135 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 173 (234)
..|. .|+..+.. -.....|..||..||..|...
T Consensus 20 ~~C~--~C~~~Fs~----~~RkHHCR~CG~ifC~~Cs~~ 52 (120)
T 1y02_A 20 PSCK--SCGAHFAN----TARKQTCLDCKKNFCMTCSSQ 52 (120)
T ss_dssp CCCT--TTCCCCSS----GGGCEECTTTCCEECGGGEEC
T ss_pred Cccc--CcCCcccc----ccccccCCCCCCeeCHHHhCC
Confidence 3577 77765432 134589999999999999654
No 191
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=27.08 E-value=42 Score=21.24 Aligned_cols=33 Identities=27% Similarity=0.578 Sum_probs=23.8
Q ss_pred ecCCCCCCCCceecCCCCccCcccCccccccccccCCCC
Q 048114 135 FYCPFKDCSALLIDDGGEAIRESVCPDCNRMFCAQCKVP 173 (234)
Q Consensus 135 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 173 (234)
..|. .|...+..- .....|..||..||..|...
T Consensus 10 ~~C~--~C~~~F~~~----~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 10 SRCY--GCAVKFTLF----KKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp SBCT--TTCCBCCSS----SCEEECSSSCCEEETTTSCE
T ss_pred CCCc--CcCCcccCc----cccccCCCCCCEEChhHcCC
Confidence 3577 777654322 34589999999999999753
No 192
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=26.88 E-value=21 Score=23.42 Aligned_cols=30 Identities=17% Similarity=0.397 Sum_probs=21.8
Q ss_pred CCcccCCCCCceeeeccCCCceEec-CCCCC
Q 048114 205 ENWRRCPNCKIFVEKKEGCRYMRCS-SNPQL 234 (234)
Q Consensus 205 ~~~k~CP~C~~~i~k~~GCnhm~C~-C~~~F 234 (234)
..-..||.|+..-.|..+=.--.|+ |++.|
T Consensus 34 ~aky~CpfCgk~~vKR~a~GIW~C~kCg~~~ 64 (103)
T 4a17_Y 34 HAKYGCPFCGKVAVKRAAVGIWKCKPCKKII 64 (103)
T ss_dssp HSCEECTTTCCEEEEEEETTEEEETTTTEEE
T ss_pred hcCCCCCCCCCceeeecCcceEEcCCCCCEE
Confidence 3456899999977777666666885 87654
No 193
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=26.80 E-value=5.5 Score=18.86 Aligned_cols=21 Identities=19% Similarity=0.532 Sum_probs=15.4
Q ss_pred ccccCCCCCCCCCCCHHHHhccC
Q 048114 90 TSINCPVADCKGVLEPEYCRDIL 112 (234)
Q Consensus 90 ~~i~CP~~~C~~~l~~~~i~~~l 112 (234)
+.+.|| .|+..++...|...|
T Consensus 5 f~vqcp--vcqq~mpaahin~hl 25 (29)
T 3vhs_A 5 FQVQCP--VCQQMMPAAHINSHL 25 (29)
T ss_dssp CEEECT--TTCCEEEGGGHHHHH
T ss_pred eeeeCh--HHHHhCcHHHHHHHH
Confidence 567899 898888777765443
No 194
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=26.64 E-value=40 Score=26.69 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=20.3
Q ss_pred ccCCCCCceeee--cc--CCCceEec-CCCC
Q 048114 208 RRCPNCKIFVEK--KE--GCRYMRCS-SNPQ 233 (234)
Q Consensus 208 k~CP~C~~~i~k--~~--GCnhm~C~-C~~~ 233 (234)
++||.|+..|++ -+ |=.-..|. |..|
T Consensus 252 ~pC~~CGt~I~~~~~g~~gRsTyfCp~~~~~ 282 (287)
T 3w0f_A 252 PNCDQCHSKITVCRFGENSRMTYFCPHCQKH 282 (287)
T ss_dssp SBCTTTCCBCEEECSSTTCCCEEECTTTSCC
T ss_pred CCCCCCCCEEEEEEecCCCCCEEECCCcccc
Confidence 499999999987 34 77778884 8764
No 195
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.02 E-value=58 Score=19.06 Aligned_cols=34 Identities=21% Similarity=0.566 Sum_probs=24.7
Q ss_pred cccccccccCCCCCCceeeCCCCChhhHHHHHHHHH
Q 048114 47 SFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVA 82 (234)
Q Consensus 47 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~ 82 (234)
=+.|..|...+.. ..+.. .=+..||..|..+.+.
T Consensus 33 CF~C~~C~~~L~~-~~~~~-~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 33 CFVCSTCRAQLRG-QHFYA-VERRAYCEGCYVATLE 66 (72)
T ss_dssp TCBCSSSCCBCTT-SCEEE-SSSCEEEHHHHHHHHH
T ss_pred CCcccccCCcCCc-CcCEe-eCCeEECHHHHHHHHc
Confidence 5789999888853 33433 4578899999987664
No 196
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=26.00 E-value=12 Score=26.93 Aligned_cols=76 Identities=21% Similarity=0.437 Sum_probs=43.2
Q ss_pred CCcccccccccCCC-CCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCHHHHhccCCHHHHHHHHHH
Q 048114 45 ETSFICDICVEPKS-TDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEPEYCRDILPEDVFNRWGNA 123 (234)
Q Consensus 45 ~~~~~C~iC~~~~~-~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~~~~~ 123 (234)
+....| +|..... ...++....|...|...|+.-.... .+......|| .|...-.......-++.+.++...+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~--~~~~~~~~C~--~C~~~~~~~~~~~~l~~~~~~~l~~i 80 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSE--AELIDEYVCP--QCQSTEDAMTVLTPLTEKDYEGLKRV 80 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHH--HTTCSSCCCH--HHHHHHHHHTTTSBCCHHHHHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhh--ccCccCeecC--CCcchhccccccccCCHHHHHHHHHH
Confidence 446779 9988653 3456777788888999998422111 1223467888 77542211112234556666665555
Q ss_pred HH
Q 048114 124 LC 125 (234)
Q Consensus 124 ~~ 125 (234)
+.
T Consensus 81 l~ 82 (174)
T 2ri7_A 81 LR 82 (174)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 197
>2be7_D Aspartate carbamoyltransferase regulatory chain; atcase, psychrophilic, cold adaptation, alloste holoenzyme; 2.85A {Moritella profunda}
Probab=25.93 E-value=18 Score=25.69 Aligned_cols=33 Identities=21% Similarity=0.493 Sum_probs=17.8
Q ss_pred eecCCCCCC-C------CceecCCCCccCcccCccccccc
Q 048114 134 KFYCPFKDC-S------ALLIDDGGEAIRESVCPDCNRMF 166 (234)
Q Consensus 134 ~~~Cp~~~C-~------~~~~~~~~~~~~~~~C~~C~~~~ 166 (234)
.+.||+|.| . ..|...........+|..|+..+
T Consensus 105 v~~C~Np~CITn~E~v~s~F~v~~~~~~~~lrC~YCe~~~ 144 (153)
T 2be7_D 105 VFPCPNSNCITHGEPVTSSFSIKKTKGNIGLKCKYCEKTF 144 (153)
T ss_dssp SSCCSCTTCTTSSSSCCCCEEEEEETTEEEEEETTTCCEE
T ss_pred eEEcCCCCCCcCCcccccEEEEeecCCCCEEEeeCCCCEe
Confidence 357999999 3 12222111102347888877654
No 198
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=25.70 E-value=30 Score=21.31 Aligned_cols=55 Identities=22% Similarity=0.556 Sum_probs=35.6
Q ss_pred CcccccccccCCC-CCCceeeCCCCChhhHHHHHHHHHHHHhcCCccccCCCCCCCCCCCH
Q 048114 46 TSFICDICVEPKS-TDESFSIKGCSHSYCTECMTKYVASKLQENITSINCPVADCKGVLEP 105 (234)
Q Consensus 46 ~~~~C~iC~~~~~-~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 105 (234)
....| ||..... ...++....|..-|...|+.-..... .......|| .|.....+
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~--~~~~~~~C~--~C~~~~~~ 66 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENA--VDIDIYHCP--DCEAVFGP 66 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHH--TTCSBBCCT--TTTTTSCS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccc--cCCCeEECC--CcccccCC
Confidence 35668 8988764 44677777888888888885322211 223578899 88765443
No 199
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.61 E-value=23 Score=21.27 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=23.5
Q ss_pred cccccccccCCCCCCceeeCCCCChhhHHHHHHHH
Q 048114 47 SFICDICVEPKSTDESFSIKGCSHSYCTECMTKYV 81 (234)
Q Consensus 47 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~ 81 (234)
=+.|..|...+.....+.. .=+..||..|.....
T Consensus 31 CF~C~~C~~~L~~~~~f~~-~~~~~yC~~C~~~~~ 64 (73)
T 1wig_A 31 CALCVRCGQMFAEGEEMYL-QGSSIWHPACRQAAR 64 (73)
T ss_dssp TSCCSSSCCCCCSSCCCEE-ETTEEECTTHHHHTS
T ss_pred cCEeCCCCCCCCCCCeeEe-eCCEEEChHHChHhh
Confidence 5789999888863444443 446779999986544
No 200
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=25.43 E-value=41 Score=18.50 Aligned_cols=18 Identities=22% Similarity=0.551 Sum_probs=13.1
Q ss_pred cccccCCCCCCCCCChhh
Q 048114 165 MFCAQCKVPWHAGIRCAE 182 (234)
Q Consensus 165 ~~C~~C~~~~H~~~~C~~ 182 (234)
..|+.|.+..|....|..
T Consensus 7 ~~C~~Cg~~GH~a~~C~~ 24 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRA 24 (49)
T ss_dssp CBCTTTCCBTCCTTTCCC
T ss_pred CeeeecCCCCcChhhCcC
Confidence 457778777888777764
No 201
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=24.85 E-value=43 Score=18.71 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=17.9
Q ss_pred cCCcccCCCCCceeeec-cCCCceEe
Q 048114 204 KENWRRCPNCKIFVEKK-EGCRYMRC 228 (234)
Q Consensus 204 ~~~~k~CP~C~~~i~k~-~GCnhm~C 228 (234)
....+.|+.|+..|... .|=+.-+|
T Consensus 15 ~~~~~~C~~CG~~i~~~~~~r~krFC 40 (49)
T 2l8e_A 15 KANLLKCEYCGKYAPAEQFRGSKRFC 40 (49)
T ss_dssp GCSEEECTTTCCEEEGGGCTTTSSSC
T ss_pred cCCCCcChhccCccccccCCCCCccC
Confidence 35667899999999875 34445555
No 202
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=24.52 E-value=25 Score=20.51 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=24.2
Q ss_pred CCcccccccccCCC-CCCceeeCCCCChhhHHHHH
Q 048114 45 ETSFICDICVEPKS-TDESFSIKGCSHSYCTECMT 78 (234)
Q Consensus 45 ~~~~~C~iC~~~~~-~~~~~~~~~C~H~fC~~Cl~ 78 (234)
++...|++|..... ...++....|..-|...|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvg 38 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVK 38 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccC
Confidence 34677999988764 34566667787778888873
No 203
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=24.20 E-value=40 Score=25.30 Aligned_cols=18 Identities=39% Similarity=1.200 Sum_probs=15.6
Q ss_pred CcccCccccccccccCCC
Q 048114 155 RESVCPDCNRMFCAQCKV 172 (234)
Q Consensus 155 ~~~~C~~C~~~~C~~C~~ 172 (234)
....|..||..||..|..
T Consensus 176 rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 176 RKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCEECTTTCCEECSTTSC
T ss_pred cccccCCcCCEEChHHhC
Confidence 458899999999999976
No 204
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=24.03 E-value=23 Score=22.74 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=20.9
Q ss_pred CCcccCCCCCceeeeccCCCceEec-CCCCC
Q 048114 205 ENWRRCPNCKIFVEKKEGCRYMRCS-SNPQL 234 (234)
Q Consensus 205 ~~~k~CP~C~~~i~k~~GCnhm~C~-C~~~F 234 (234)
..-..||.|+..-.|..+=.--.|+ |++.|
T Consensus 34 ~~ky~CpfCgk~~vkR~a~GIW~C~~C~~~~ 64 (92)
T 3izc_m 34 HARYDCSFCGKKTVKRGAAGIWTCSCCKKTV 64 (92)
T ss_dssp HSCCCCSSSCSSCCEEEETTEEECTTTCCEE
T ss_pred hcCCcCCCCCCceeeecccceEEcCCCCCEE
Confidence 3446899999876666665566784 87654
No 205
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=23.93 E-value=20 Score=17.46 Aligned_cols=13 Identities=23% Similarity=0.608 Sum_probs=10.0
Q ss_pred CcccccccccCCC
Q 048114 46 TSFICDICVEPKS 58 (234)
Q Consensus 46 ~~~~C~iC~~~~~ 58 (234)
+.+.|+||....+
T Consensus 2 ~k~~CpvCk~q~P 14 (28)
T 2jvx_A 2 SDFCCPKCQYQAP 14 (28)
T ss_dssp CCEECTTSSCEES
T ss_pred CcccCccccccCc
Confidence 3678999988665
No 206
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=23.87 E-value=67 Score=19.62 Aligned_cols=31 Identities=16% Similarity=0.383 Sum_probs=20.5
Q ss_pred cCCcccCCCCCceeeeccCCCceEec-CCCCC
Q 048114 204 KENWRRCPNCKIFVEKKEGCRYMRCS-SNPQL 234 (234)
Q Consensus 204 ~~~~k~CP~C~~~i~k~~GCnhm~C~-C~~~F 234 (234)
......||.|+..-.|..+=---.|+ |++.|
T Consensus 24 q~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~ 55 (73)
T 1ffk_W 24 HKKKYKCPVCGFPKLKRASTSIWVCGHCGYKI 55 (73)
T ss_pred cccCccCCCCCCceeEEEEeEEEECCCCCcEE
Confidence 44557999999965565544556674 77654
No 207
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.42 E-value=53 Score=19.18 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=12.6
Q ss_pred cccccCCCCCCCCCChhh
Q 048114 165 MFCAQCKVPWHAGIRCAE 182 (234)
Q Consensus 165 ~~C~~C~~~~H~~~~C~~ 182 (234)
..|+.|...-|....|..
T Consensus 8 ~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp CCCSSSCCSSSCTTTCCS
T ss_pred CcccccCCCCcChhhCCC
Confidence 347777777787777763
No 208
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.98 E-value=72 Score=18.36 Aligned_cols=33 Identities=30% Similarity=0.810 Sum_probs=25.8
Q ss_pred cccccccccCCCCCCceeeCCCCChhh-HHHHHHHHHH
Q 048114 47 SFICDICVEPKSTDESFSIKGCSHSYC-TECMTKYVAS 83 (234)
Q Consensus 47 ~~~C~iC~~~~~~~~~~~~~~C~H~fC-~~Cl~~~~~~ 83 (234)
...|.||.. . ..+..+.|+-.|| ..|++.|-..
T Consensus 12 ~~~C~vC~~-~---~kY~CPrC~~~yCSl~C~k~Hk~~ 45 (56)
T 2yqq_A 12 TVVCVICLE-K---PKYRCPACRVPYCSVVCFRKHKEQ 45 (56)
T ss_dssp CCCCTTTCS-C---CSEECTTTCCEESSHHHHHHHHHH
T ss_pred CCccCcCcC-C---CeeeCCCCCCCeeCHHHHHHHHhh
Confidence 345999987 3 3467789999999 6999998764
No 209
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.95 E-value=67 Score=18.58 Aligned_cols=33 Identities=24% Similarity=0.731 Sum_probs=23.7
Q ss_pred cccccccccCCCCCCceeeCCCCChhhHHHHHHHH
Q 048114 47 SFICDICVEPKSTDESFSIKGCSHSYCTECMTKYV 81 (234)
Q Consensus 47 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~ 81 (234)
=+.|..|...+.... +.. .=+..||..|..+.+
T Consensus 31 CF~C~~C~~~L~~~~-~~~-~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 31 CFVCVTCSKKLAGQR-FTA-VEDQYYCVDCYKNFV 63 (69)
T ss_dssp TTBCTTTCCBCTTSC-EEE-CSSCEEEHHHHHHHH
T ss_pred cCEECCCCCCCCCCc-cEe-ECCEEECHHHhHHHh
Confidence 578999988886433 433 457889999987655
No 210
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=22.27 E-value=71 Score=22.08 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=11.0
Q ss_pred CeecCCCCCCCCceecC
Q 048114 133 QKFYCPFKDCSALLIDD 149 (234)
Q Consensus 133 ~~~~Cp~~~C~~~~~~~ 149 (234)
...+|. +|++.+...
T Consensus 69 ~~~~C~--~CG~~~~~~ 83 (139)
T 3a43_A 69 AVFKCR--NCNYEWKLK 83 (139)
T ss_dssp CEEEET--TTCCEEEGG
T ss_pred CcEECC--CCCCEEecc
Confidence 346899 899877654
No 211
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.14 E-value=32 Score=19.13 Aligned_cols=14 Identities=21% Similarity=0.646 Sum_probs=10.9
Q ss_pred CCcccCCCCCceee
Q 048114 205 ENWRRCPNCKIFVE 218 (234)
Q Consensus 205 ~~~k~CP~C~~~i~ 218 (234)
.+.+.||+|++...
T Consensus 10 ~~~~~CPrCn~~f~ 23 (49)
T 2e72_A 10 GGRKICPRCNAQFR 23 (49)
T ss_dssp SSCCCCTTTCCCCS
T ss_pred CCceeCCccccccc
Confidence 35689999998654
No 212
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=21.50 E-value=1.4e+02 Score=21.76 Aligned_cols=13 Identities=31% Similarity=0.603 Sum_probs=9.5
Q ss_pred CCeecCCCCCCCC
Q 048114 132 AQKFYCPFKDCSA 144 (234)
Q Consensus 132 ~~~~~Cp~~~C~~ 144 (234)
...-.||+-.|..
T Consensus 104 g~FG~CPRv~C~~ 116 (182)
T 1qf8_A 104 GDFGYCPRVYCEN 116 (182)
T ss_dssp TTTCBCCBGGGTT
T ss_pred CcCCCCCccccCC
Confidence 3445899999974
No 213
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=21.42 E-value=23 Score=25.30 Aligned_cols=20 Identities=25% Similarity=0.679 Sum_probs=15.0
Q ss_pred cccCCCCCceeeeccCCCceEec--CCC
Q 048114 207 WRRCPNCKIFVEKKEGCRYMRCS--SNP 232 (234)
Q Consensus 207 ~k~CP~C~~~i~k~~GCnhm~C~--C~~ 232 (234)
.|.||+|.-.++ ++-|+ |||
T Consensus 110 ~k~CpnC~g~L~------~~~Crgh~Gy 131 (174)
T 1odh_A 110 RKSCPNCNGPLK------LIPCRGHGGF 131 (174)
T ss_dssp HSBCSSSCCBEE------EECCCTBTTB
T ss_pred cCCCCCCCccee------eEeccCcCCC
Confidence 489999988774 66674 665
No 214
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=21.27 E-value=42 Score=17.79 Aligned_cols=19 Identities=37% Similarity=0.579 Sum_probs=15.1
Q ss_pred ccccccCCCCCCCCCChhh
Q 048114 164 RMFCAQCKVPWHAGIRCAE 182 (234)
Q Consensus 164 ~~~C~~C~~~~H~~~~C~~ 182 (234)
...|+.|++.-|.-..|..
T Consensus 10 ~~~C~~Cgk~GH~ardCP~ 28 (40)
T 1a6b_B 10 RDQCAYCKEKGHWAKDCPK 28 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSS
T ss_pred CCeeeECCCCCcchhhCcC
Confidence 3567888888999888875
No 215
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=21.26 E-value=55 Score=23.70 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=17.2
Q ss_pred cccCCCCCceeeeccCCCceEe-cCCC
Q 048114 207 WRRCPNCKIFVEKKEGCRYMRC-SSNP 232 (234)
Q Consensus 207 ~k~CP~C~~~i~k~~GCnhm~C-~C~~ 232 (234)
+..||+|+..+... +=....| +|+.
T Consensus 42 Y~ACp~CnKKV~~~-~~g~~~CekC~~ 67 (172)
T 3u50_C 42 YYRCTCQGKSVLKY-HGDSFFCESCQQ 67 (172)
T ss_dssp EEECTTSCCCEEEE-TTTEEEETTTTE
T ss_pred ehhchhhCCEeeeC-CCCeEECCCCCC
Confidence 57999999987743 2246778 5764
No 216
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=21.23 E-value=60 Score=23.34 Aligned_cols=22 Identities=32% Similarity=0.866 Sum_probs=15.3
Q ss_pred cCCCCCCCCceecCCCCccCcccCccccc
Q 048114 136 YCPFKDCSALLIDDGGEAIRESVCPDCNR 164 (234)
Q Consensus 136 ~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~ 164 (234)
.|+ .|++++..+ .+ ..||.|+.
T Consensus 140 ~C~--~CG~i~~~~----~p-~~CP~Cg~ 161 (170)
T 3pwf_A 140 ICP--ICGYTAVDE----AP-EYCPVCGA 161 (170)
T ss_dssp ECT--TTCCEEESC----CC-SBCTTTCC
T ss_pred EeC--CCCCeeCCC----CC-CCCCCCCC
Confidence 499 899988721 22 38888875
No 217
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=20.91 E-value=60 Score=19.75 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=14.2
Q ss_pred cccccCCCCCCCCCChhh
Q 048114 165 MFCAQCKVPWHAGIRCAE 182 (234)
Q Consensus 165 ~~C~~C~~~~H~~~~C~~ 182 (234)
..|+.|.+..|....|..
T Consensus 25 ~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 25 DRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp SCCTTTCCSSSCTTTCSS
T ss_pred CcccccCCcCcCcccCCC
Confidence 467888888999888863
No 218
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=20.77 E-value=55 Score=20.41 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=15.7
Q ss_pred cccCCCCCCCCCCCHHH-HhccCC
Q 048114 91 SINCPVADCKGVLEPEY-CRDILP 113 (234)
Q Consensus 91 ~i~CP~~~C~~~l~~~~-i~~~l~ 113 (234)
..+|| .|+..|+-++ |.+.|.
T Consensus 8 ~~~~P--lCG~~L~W~eLIeQML~ 29 (95)
T 2k5c_A 8 MAKCP--ICGSPLKWEELIEEMLI 29 (95)
T ss_dssp CEECS--SSCCEECHHHHHHHSTT
T ss_pred cccCC--cCCCccCHHHHHHHHHh
Confidence 45899 9999999765 455654
No 219
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.62 E-value=54 Score=23.37 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=23.7
Q ss_pred HHHHHHhcCCcccCCCCCc---eeee--ccCCCceEec-CCCC
Q 048114 197 MLMTLAQKENWRRCPNCKI---FVEK--KEGCRYMRCS-SNPQ 233 (234)
Q Consensus 197 ~l~~~~~~~~~k~CP~C~~---~i~k--~~GCnhm~C~-C~~~ 233 (234)
.|..++ ..+-.||.|+. .+.+ ..+=-.+.|. ||+.
T Consensus 95 ~L~~yI--~~YVlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~ 135 (157)
T 2e9h_A 95 MLDGFI--KKFVLCPECENPETDLHVNPKKQTIGNSCKACGYR 135 (157)
T ss_dssp HHHHHH--HHTTSCTTTCCSCCEEEEETTTTEEEEECSSSCCE
T ss_pred HHHHHH--HHeEECCCCCCCccEEEEecCCCEEEEEccCCCCC
Confidence 444444 23579999998 3554 5677789996 9974
No 220
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=20.55 E-value=79 Score=16.07 Aligned_cols=15 Identities=20% Similarity=0.428 Sum_probs=12.4
Q ss_pred CCcccCCCCCceeee
Q 048114 205 ENWRRCPNCKIFVEK 219 (234)
Q Consensus 205 ~~~k~CP~C~~~i~k 219 (234)
..+-.|+.|+..|+-
T Consensus 4 ~~fY~C~~CGnivev 18 (36)
T 1dxg_A 4 GDVYKCELCGQVVKV 18 (36)
T ss_dssp TCEEECTTTCCEEEE
T ss_pred ccEEEcCCCCcEEEE
Confidence 456789999999986
No 221
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=20.48 E-value=55 Score=20.46 Aligned_cols=19 Identities=32% Similarity=0.734 Sum_probs=11.7
Q ss_pred ccccccCCCCCCCCCChhh
Q 048114 164 RMFCAQCKVPWHAGIRCAE 182 (234)
Q Consensus 164 ~~~C~~C~~~~H~~~~C~~ 182 (234)
...|+.|...-|....|.+
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~ 23 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPS 23 (83)
T ss_dssp --CCSSSCCSSSCGGGCGG
T ss_pred cCCCCCCCCCCCccccCCC
Confidence 3456677777777777765
No 222
>2e3e_A Defensin, mutant DEF-BBB; insect defensin, CSAB motif, antibacterial, antimicrobial protein; NMR {Anopheles gambiae} PDB: 2e3f_A 2ny9_X
Probab=20.39 E-value=17 Score=19.95 Aligned_cols=16 Identities=19% Similarity=0.623 Sum_probs=10.6
Q ss_pred eccC-CCceEecCCCCC
Q 048114 219 KKEG-CRYMRCSSNPQL 234 (234)
Q Consensus 219 k~~G-Cnhm~C~C~~~F 234 (234)
+.+| ||..+|.|...|
T Consensus 29 ~~GGyC~~~vCvCr~~~ 45 (45)
T 2e3e_A 29 YRGGYCKNKICHCRDKF 45 (45)
T ss_dssp BCCEEEETTEEEECCBC
T ss_pred CcCccCCCCEEEEecCC
Confidence 4444 777788887665
No 223
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=20.36 E-value=79 Score=19.27 Aligned_cols=33 Identities=21% Similarity=0.445 Sum_probs=24.2
Q ss_pred CCcccccccccCCCCCCceeeC--CCCChhhHHHHH
Q 048114 45 ETSFICDICVEPKSTDESFSIK--GCSHSYCTECMT 78 (234)
Q Consensus 45 ~~~~~C~iC~~~~~~~~~~~~~--~C~H~fC~~Cl~ 78 (234)
+....| ||........++..- .|..-|...|+.
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVg 48 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVI 48 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHS
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEc
Confidence 346779 898875555677666 788888888883
No 224
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=20.27 E-value=54 Score=21.95 Aligned_cols=35 Identities=14% Similarity=0.377 Sum_probs=21.6
Q ss_pred cccccccccCCCCCCceeeCCCCChhhHHHHHHHHH
Q 048114 47 SFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVA 82 (234)
Q Consensus 47 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~ 82 (234)
=+.|..|...+...+.+.. .=+..||..|..+.+.
T Consensus 94 CF~C~~C~~~L~~g~~f~~-~~~~~~C~~c~~~~~~ 128 (131)
T 2xjy_A 94 CFKCAACQKHFCVGDRYLL-INSDIVCEQDIYEWTK 128 (131)
T ss_dssp GCBCTTTCCBCCTTCEEEE-ETTEEEEGGGHHHHHH
T ss_pred CcccCCCCCCCCCCCEEEE-ECCEEEcHHHHHHHhh
Confidence 3567777777643343433 2367788888876654
No 225
>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex, structural genomics, NPPSFA; HET: ATP; 2.00A {Methanocaldococcus jannaschii}
Probab=20.26 E-value=28 Score=24.53 Aligned_cols=31 Identities=13% Similarity=0.414 Sum_probs=17.4
Q ss_pred ecCCCCCC-C------CceecCCCCccCcccCccccccc
Q 048114 135 FYCPFKDC-S------ALLIDDGGEAIRESVCPDCNRMF 166 (234)
Q Consensus 135 ~~Cp~~~C-~------~~~~~~~~~~~~~~~C~~C~~~~ 166 (234)
+.||+|.| . ..|.... ......+|..|+..+
T Consensus 106 l~C~Np~CITn~E~v~s~F~v~~-~~~~~lrC~YCe~~~ 143 (149)
T 2yww_A 106 LKCTNPNCITNKEKVRGKFKIES-KNPLKIRCYYCEKFL 143 (149)
T ss_dssp SCCSCTTSGGGTSCCCCEEEEEE-ETTEEEEETTTCCBC
T ss_pred EEcCCCCCCcCCcccccEEEEEe-CCCCEEEeeCCCcCh
Confidence 47999999 2 2222211 112337888887653
No 226
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=20.26 E-value=37 Score=19.18 Aligned_cols=7 Identities=43% Similarity=1.175 Sum_probs=3.4
Q ss_pred cCCCCCc
Q 048114 209 RCPNCKI 215 (234)
Q Consensus 209 ~CP~C~~ 215 (234)
.|+.|+.
T Consensus 41 ~C~~C~k 47 (62)
T 1vd4_A 41 RCTFCHT 47 (62)
T ss_dssp BCSSSCC
T ss_pred ECCCCCC
Confidence 4555544
No 227
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.22 E-value=54 Score=19.10 Aligned_cols=34 Identities=26% Similarity=0.566 Sum_probs=24.3
Q ss_pred cccccccccCCCCCCceeeCCCCChhhHHHHHHHHH
Q 048114 47 SFICDICVEPKSTDESFSIKGCSHSYCTECMTKYVA 82 (234)
Q Consensus 47 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~ 82 (234)
=+.|..|...+.... +.. .=+..||..|..+.+.
T Consensus 31 CF~C~~C~~~L~~~~-f~~-~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 31 CFRCDLCQEVLADIG-FVK-NAGRHLCRPCHNREKA 64 (70)
T ss_dssp TSBCSSSCCBCSSSC-CEE-ETTEEECHHHHHHHHC
T ss_pred CCEeCCCCCcCCCCc-cEe-ECCeEECHHHhhhhcC
Confidence 578999988876543 333 4578899999877653
No 228
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=20.18 E-value=22 Score=29.63 Aligned_cols=37 Identities=16% Similarity=0.318 Sum_probs=0.0
Q ss_pred cccccccccCCCCCC-ceeeCCCCChhhHHHHHHHHHH
Q 048114 47 SFICDICVEPKSTDE-SFSIKGCSHSYCTECMTKYVAS 83 (234)
Q Consensus 47 ~~~C~iC~~~~~~~~-~~~~~~C~H~fC~~Cl~~~~~~ 83 (234)
...|.+|...|.... ......||+.||..|....+..
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~ 412 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPL 412 (434)
T ss_dssp --------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeC
Confidence 567999998885321 1233589999999999876543
No 229
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=20.16 E-value=54 Score=23.69 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=21.0
Q ss_pred cccCCCCCc---eeee--ccCCCceEec-CCCC
Q 048114 207 WRRCPNCKI---FVEK--KEGCRYMRCS-SNPQ 233 (234)
Q Consensus 207 ~k~CP~C~~---~i~k--~~GCnhm~C~-C~~~ 233 (234)
+-.||.|+. .+.+ .++=-.+.|. ||+.
T Consensus 96 YVlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~ 128 (170)
T 2g2k_A 96 FVLCPECENPETDLHVNPKKQTIGNSCKACGYR 128 (170)
T ss_dssp HHSCTTTSSSCEEEEEETTTTEEEEEETTTCCC
T ss_pred eEECCCCCCCccEEEEecCCCEEEEEccccCCc
Confidence 469999998 4556 5677789996 9975
Done!