BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>048115
MGRWMRPEVYPLMAAMTFVASMCVFQLTRNVLLNPDVRINKGRRSMGVLENEEEGEKYAE
HGLRRFLRTRPPQVMPAINRFFTQDKDQFQPPKN

High Scoring Gene Products

Symbol, full name Information P value
AT3G29970 protein from Arabidopsis thaliana 1.1e-30
AT3G48140 protein from Arabidopsis thaliana 8.0e-21

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  048115
        (94 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2829357 - symbol:AT3G29970 "AT3G29970" species...   338  1.1e-30   1
TAIR|locus:2100484 - symbol:AT3G48140 "AT3G48140" species...   245  8.0e-21   1


>TAIR|locus:2829357 [details] [associations]
            symbol:AT3G29970 "AT3G29970" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AP000736
            InterPro:IPR010530 Pfam:PF06522 HOGENOM:HOG000242252
            IPI:IPI00526407 RefSeq:NP_189632.1 UniGene:At.36845 STRING:Q9LJ47
            PaxDb:Q9LJ47 PRIDE:Q9LJ47 EnsemblPlants:AT3G29970.1 GeneID:822700
            KEGG:ath:AT3G29970 TAIR:At3g29970 eggNOG:NOG240018
            InParanoid:Q9LJ47 OMA:EGEKYAQ PhylomeDB:Q9LJ47
            ProtClustDB:CLSN2684506 Genevestigator:Q9LJ47 Uniprot:Q9LJ47
        Length = 87

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 60/85 (70%), Positives = 72/85 (84%)

Query:     1 MGRWMRPEVYPLMAAMTFVASMCVFQLTRNVLLNPDVRINKGRRSMGVLENEEEGEKYAE 60
             MGRW+RPEVYPL+ AM FV SM VFQLTRN  LNPD RINK  R MG+LEN++EGEKYA+
Sbjct:     1 MGRWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQ 60

Query:    61 HGLRRFLRTRPPQVMPAINRFFTQD 85
             H  R++LRTR PQVMP++NRFF+Q+
Sbjct:    61 HNFRKYLRTRQPQVMPSLNRFFSQE 85


>TAIR|locus:2100484 [details] [associations]
            symbol:AT3G48140 "AT3G48140" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0010150 "leaf senescence"
            evidence=ISS] [GO:0005777 "peroxisome" evidence=IDA] EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0005777 EMBL:AL096856
            InterPro:IPR010530 Pfam:PF06522 UniGene:At.66502 EMBL:AY081326
            EMBL:BT001183 EMBL:AK317041 EMBL:F19976 IPI:IPI00540457 PIR:T13003
            RefSeq:NP_190397.1 STRING:Q42338 PaxDb:Q42338 PRIDE:Q42338
            EnsemblPlants:AT3G48140.1 GeneID:823969 KEGG:ath:AT3G48140
            TAIR:At3g48140 eggNOG:NOG264292 HOGENOM:HOG000242252
            InParanoid:Q42338 OMA:HGLRKFV PhylomeDB:Q42338
            ProtClustDB:CLSN2913370 ArrayExpress:Q42338 Genevestigator:Q42338
            Uniprot:Q42338
        Length = 88

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 42/81 (51%), Positives = 57/81 (70%)

Query:     3 RWMRPEVYPLMAAMTFVASMCVFQLTRNVLLNPDVRINKGRRSMGVLENEEEGEKYAEHG 62
             RW+RPEVYPL AA      +C F L RN+  NP+VR  K  R+ G+L+N  EGEKY E+ 
Sbjct:     4 RWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKENF 63

Query:    63 LRRFLRTRPPQVMPAINRFFT 83
             LR+F+R + P++MP +N+FFT
Sbjct:    64 LRKFVRNKKPEIMPGLNKFFT 84


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.138   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       94        94   0.00091  102 3  11 22  0.45    29
                                                     29  0.42    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  546 (58 KB)
  Total size of DFA:  110 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.73u 0.10s 11.83t   Elapsed:  00:00:01
  Total cpu time:  11.73u 0.10s 11.83t   Elapsed:  00:00:01
  Start:  Fri May 10 09:46:53 2013   End:  Fri May 10 09:46:54 2013

Back to top