BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048115
         (94 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IG4|A Chain A, Structure Of A Putative Aminopeptidase P From Bacillus
           Anthracis
 pdb|3IG4|B Chain B, Structure Of A Putative Aminopeptidase P From Bacillus
           Anthracis
 pdb|3IG4|C Chain C, Structure Of A Putative Aminopeptidase P From Bacillus
           Anthracis
 pdb|3IG4|D Chain D, Structure Of A Putative Aminopeptidase P From Bacillus
           Anthracis
 pdb|3IG4|E Chain E, Structure Of A Putative Aminopeptidase P From Bacillus
           Anthracis
 pdb|3IG4|F Chain F, Structure Of A Putative Aminopeptidase P From Bacillus
           Anthracis
          Length = 427

 Score = 27.3 bits (59), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 19/27 (70%)

Query: 41  KGRRSMGVLENEEEGEKYAEHGLRRFL 67
           +G +++G+++ +EE  KY  HG+  FL
Sbjct: 319 EGCKAVGLIQEDEELSKYYYHGVSHFL 345


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,750,139
Number of Sequences: 62578
Number of extensions: 92474
Number of successful extensions: 205
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 204
Number of HSP's gapped (non-prelim): 1
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)