Query 048115
Match_columns 94
No_of_seqs 122 out of 131
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:24:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048115.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048115hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06522 B12D: NADH-ubiquinone 99.9 1.3E-25 2.8E-30 145.7 3.7 72 4-84 1-72 (73)
2 PF06679 DUF1180: Protein of u 75.2 2 4.4E-05 32.0 1.8 35 12-52 98-135 (163)
3 PF01307 Plant_vir_prot: Plant 73.8 2.9 6.4E-05 28.9 2.2 19 12-30 12-30 (104)
4 PF08216 CTNNBL: Catenin-beta- 69.3 2.6 5.5E-05 29.7 1.1 20 6-25 76-95 (108)
5 PF05251 UPF0197: Uncharacteri 68.7 6.1 0.00013 26.4 2.8 29 5-33 11-41 (77)
6 PF14880 COX14: Cytochrome oxi 54.8 13 0.00029 22.8 2.4 27 9-35 18-44 (59)
7 PF03672 UPF0154: Uncharacteri 49.7 15 0.00034 23.7 2.1 12 22-33 12-23 (64)
8 PF10661 EssA: WXG100 protein 46.8 21 0.00046 25.8 2.7 19 14-32 126-144 (145)
9 PF13056 DUF3918: Protein of u 40.7 26 0.00057 21.1 2.0 16 14-29 7-22 (43)
10 PRK13755 putative mercury tran 40.2 34 0.00075 25.2 2.9 22 9-30 53-74 (139)
11 PF05751 FixH: FixH; InterPro 38.9 8.8 0.00019 26.1 -0.3 41 12-62 8-49 (146)
12 PRK13887 conjugal transfer pro 37.5 72 0.0016 24.4 4.5 15 55-69 108-122 (250)
13 PF05961 Chordopox_A13L: Chord 36.6 60 0.0013 21.4 3.3 23 12-34 7-29 (68)
14 COG3763 Uncharacterized protei 36.4 23 0.0005 23.4 1.4 28 4-34 4-31 (71)
15 COG3766 Predicted membrane pro 36.2 22 0.00047 26.1 1.3 38 12-49 78-115 (133)
16 PF09919 DUF2149: Uncharacteri 35.6 39 0.00085 22.8 2.5 33 14-46 14-46 (92)
17 PF12454 Ecm33: GPI-anchored c 31.7 76 0.0016 18.8 2.9 32 9-47 7-38 (40)
18 PF11084 DUF2621: Protein of u 31.6 53 0.0011 24.3 2.7 33 10-46 11-43 (141)
19 PHA02681 ORF089 virion membran 30.4 69 0.0015 22.1 3.0 29 14-42 10-39 (92)
20 PF08602 Mgr1: Mgr1-like, i-AA 30.2 76 0.0017 26.7 3.8 17 15-31 62-78 (363)
21 PRK11677 hypothetical protein; 29.8 34 0.00073 24.7 1.5 22 14-37 6-28 (134)
22 PF15114 UPF0640: Uncharacteri 29.7 31 0.00068 22.7 1.2 12 9-20 26-37 (69)
23 PF14654 Epiglycanin_C: Mucin, 29.2 50 0.0011 23.3 2.2 17 16-32 30-46 (106)
24 PF03650 MPC: Uncharacterised 28.9 62 0.0013 23.2 2.7 30 5-34 67-96 (119)
25 PF06295 DUF1043: Protein of u 28.3 30 0.00065 24.2 1.0 15 15-29 3-18 (128)
26 PF10883 DUF2681: Protein of u 28.3 75 0.0016 21.5 2.9 18 12-29 7-24 (87)
27 PF09849 DUF2076: Uncharacteri 27.8 63 0.0014 25.5 2.8 23 12-34 142-164 (247)
28 PF11833 DUF3353: Protein of u 26.8 56 0.0012 24.6 2.3 15 16-30 121-135 (194)
29 PF08114 PMP1_2: ATPase proteo 26.8 64 0.0014 19.5 2.1 27 6-32 7-34 (43)
30 PF11346 DUF3149: Protein of u 26.2 1E+02 0.0022 18.3 2.8 21 15-35 18-41 (42)
31 PF06450 NhaB: Bacterial Na+/H 25.8 26 0.00057 30.5 0.4 50 17-69 155-204 (515)
32 PF14962 AIF-MLS: Mitochondria 25.5 23 0.0005 27.0 0.0 27 10-36 46-72 (180)
33 PF11654 DUF2665: Protein of u 25.4 72 0.0016 19.5 2.1 16 15-30 10-25 (47)
34 PF12286 DUF3622: Protein of u 25.2 58 0.0013 21.6 1.8 41 26-70 21-61 (71)
35 PF12732 YtxH: YtxH-like prote 25.0 82 0.0018 19.6 2.5 16 12-27 3-18 (74)
36 PF15050 SCIMP: SCIMP protein 24.9 1.2E+02 0.0025 22.3 3.5 64 4-79 9-73 (133)
37 COG3592 Uncharacterized conser 24.9 33 0.0007 22.9 0.6 10 68-77 41-50 (74)
38 PF04550 Phage_holin_2: Phage 24.4 80 0.0017 21.7 2.4 23 7-29 57-80 (89)
39 KOG2802 Membrane protein HUEL 24.1 67 0.0015 27.9 2.5 22 13-35 368-389 (503)
40 PF08009 CDP-OH_P_tran_2: CDP- 24.1 86 0.0019 18.3 2.2 14 9-22 5-18 (39)
41 PF13400 Tad: Putative Flp pil 23.4 1.3E+02 0.0027 17.2 2.9 21 9-29 11-31 (48)
42 PRK11089 PTS system glucose-sp 22.8 56 0.0012 27.9 1.8 14 10-23 59-72 (477)
43 PF14990 DUF4516: Domain of un 22.6 1.1E+02 0.0025 18.6 2.7 30 10-40 10-39 (47)
44 TIGR02005 PTS-IIBC-alpha PTS s 21.6 57 0.0012 28.2 1.6 14 10-23 65-78 (524)
45 PF10177 DUF2371: Uncharacteri 21.6 31 0.00067 25.3 0.0 17 12-28 48-64 (141)
46 PF14155 DUF4307: Domain of un 21.4 1.1E+02 0.0023 21.0 2.7 24 12-35 10-33 (112)
47 KOG3491 Predicted membrane pro 21.2 93 0.002 20.2 2.2 21 12-32 42-62 (65)
48 PF10828 DUF2570: Protein of u 20.9 1.2E+02 0.0025 20.6 2.7 19 10-28 4-22 (110)
49 TIGR02003 PTS-II-BC-unk1 PTS s 20.5 67 0.0014 28.0 1.8 14 10-23 63-76 (548)
50 PF10269 Tmemb_185A: Transmemb 20.2 72 0.0016 24.3 1.8 22 10-31 151-172 (238)
51 PF14898 DUF4491: Domain of un 20.2 1.2E+02 0.0025 21.1 2.6 21 8-28 33-53 (94)
52 PLN02949 transferase, transfer 20.1 1E+02 0.0022 25.6 2.7 39 2-42 107-147 (463)
No 1
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=99.91 E-value=1.3e-25 Score=145.73 Aligned_cols=72 Identities=39% Similarity=0.576 Sum_probs=69.4
Q ss_pred ccCcchhhHHHHHHHHHHHHHHhhhhhhccCCceeeecCCCCCcccchhHhhhhhhhhhhhHhhhcCCCCcccccccccC
Q 048115 4 WMRPEVYPLMAAMTFVASMCVFQLTRNVLLNPDVRINKGRRSMGVLENEEEGEKYAEHGLRRFLRTRPPQVMPAINRFFT 83 (94)
Q Consensus 4 Wi~pEvyPL~~avgvAvg~~~~~~~R~l~~nP~vRv~K~~R~~gv~en~~EG~~y~~H~~Rr~~~~~~p~imp~~n~~f~ 83 (94)
|.+|||||||++||+|+|+|+|+++|++++||||+|+|++| .+++++|++|..|||++.+. +|||.+|++ +
T Consensus 1 ~~~pel~PL~~~vg~a~~~a~~~~~r~l~~~PdV~~~k~~~-------~~pw~~~~~~~~~K~~~~~~-~~~~~~~~~-p 71 (73)
T PF06522_consen 1 KKHPELYPLFVIVGVAVGGATFYLYRLLLTNPDVRWNKKNR-------PEPWEKYKPHEQRKFYSINQ-DYMPLKNNF-P 71 (73)
T ss_pred CCCccccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCC-------cChhhhcCccccEEeecccc-ccccccccC-C
Confidence 89999999999999999999999999999999999999999 68999999999999999999 999999998 6
Q ss_pred C
Q 048115 84 Q 84 (94)
Q Consensus 84 ~ 84 (94)
|
T Consensus 72 d 72 (73)
T PF06522_consen 72 D 72 (73)
T ss_pred C
Confidence 5
No 2
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=75.19 E-value=2 Score=31.95 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCceeeec---CCCCCcccchh
Q 048115 12 LMAAMTFVASMCVFQLTRNVLLNPDVRINK---GRRSMGVLENE 52 (94)
Q Consensus 12 L~~avgvAvg~~~~~~~R~l~~nP~vRv~K---~~R~~gv~en~ 52 (94)
+++.+|+...+.+|+++| .+|+.| .-|+.|++.+-
T Consensus 98 ~~Vl~g~s~l~i~yfvir------~~R~r~~~rktRkYgvl~~~ 135 (163)
T PF06679_consen 98 LYVLVGLSALAILYFVIR------TFRLRRRNRKTRKYGVLTTR 135 (163)
T ss_pred HHHHHHHHHHHHHHHHHH------HHhhccccccceeecccCCC
Confidence 578888888889999999 455554 33678887654
No 3
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=73.83 E-value=2.9 Score=28.89 Aligned_cols=19 Identities=37% Similarity=0.569 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 048115 12 LMAAMTFVASMCVFQLTRN 30 (94)
Q Consensus 12 L~~avgvAvg~~~~~~~R~ 30 (94)
|.+|+|++++++.|.+.|+
T Consensus 12 l~~aiG~~lal~i~~ltr~ 30 (104)
T PF01307_consen 12 LAAAIGVSLALIIFTLTRS 30 (104)
T ss_pred hHHHHHHHHHHHHHHhhcC
Confidence 6789999999999999995
No 4
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=69.26 E-value=2.6 Score=29.67 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=16.3
Q ss_pred CcchhhHHHHHHHHHHHHHH
Q 048115 6 RPEVYPLMAAMTFVASMCVF 25 (94)
Q Consensus 6 ~pEvyPL~~avgvAvg~~~~ 25 (94)
-||+||+|+-+|++..+++.
T Consensus 76 ~P~LYp~lv~l~~v~sL~~L 95 (108)
T PF08216_consen 76 APELYPELVELGAVPSLLGL 95 (108)
T ss_pred ChhHHHHHHHcCCHHHHHHH
Confidence 58999999999977766653
No 5
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=68.65 E-value=6.1 Score=26.39 Aligned_cols=29 Identities=17% Similarity=0.411 Sum_probs=20.9
Q ss_pred cCcchhhHHHHHHHHHHHH--HHhhhhhhcc
Q 048115 5 MRPEVYPLMAAMTFVASMC--VFQLTRNVLL 33 (94)
Q Consensus 5 i~pEvyPL~~avgvAvg~~--~~~~~R~l~~ 33 (94)
|+|++||.++.+-.++|++ +++.+..++.
T Consensus 11 V~p~~~p~La~vll~iGl~fta~Ffiyevts 41 (77)
T PF05251_consen 11 VNPALYPHLAVVLLAIGLFFTAWFFIYEVTS 41 (77)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4789999999988877665 4555664543
No 6
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=54.81 E-value=13 Score=22.84 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhccCC
Q 048115 9 VYPLMAAMTFVASMCVFQLTRNVLLNP 35 (94)
Q Consensus 9 vyPL~~avgvAvg~~~~~~~R~l~~nP 35 (94)
|+=|+.+.+++.++|+|+.++++..+.
T Consensus 18 V~~Lig~T~~~g~~~~~~~y~~~~~~r 44 (59)
T PF14880_consen 18 VLGLIGFTVYGGGLTVYTVYSYFKYNR 44 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888999999999999999877664
No 7
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=49.66 E-value=15 Score=23.67 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=7.2
Q ss_pred HHHHhhhhhhcc
Q 048115 22 MCVFQLTRNVLL 33 (94)
Q Consensus 22 ~~~~~~~R~l~~ 33 (94)
+++|+++|+.+.
T Consensus 12 ~~Gff~ar~~~~ 23 (64)
T PF03672_consen 12 VIGFFIARKYME 23 (64)
T ss_pred HHHHHHHHHHHH
Confidence 356777765554
No 8
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=46.78 E-value=21 Score=25.83 Aligned_cols=19 Identities=11% Similarity=0.239 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhhhhhhc
Q 048115 14 AAMTFVASMCVFQLTRNVL 32 (94)
Q Consensus 14 ~avgvAvg~~~~~~~R~l~ 32 (94)
+.+-+++|+++|...||++
T Consensus 126 ~g~ll~i~~giy~~~r~~~ 144 (145)
T PF10661_consen 126 GGILLAICGGIYVVLRKVW 144 (145)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3344677788899999886
No 9
>PF13056 DUF3918: Protein of unknown function (DUF3918)
Probab=40.70 E-value=26 Score=21.09 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhhhh
Q 048115 14 AAMTFVASMCVFQLTR 29 (94)
Q Consensus 14 ~avgvAvg~~~~~~~R 29 (94)
.++++++|+++|++.+
T Consensus 7 Slla~GaG~aAy~~A~ 22 (43)
T PF13056_consen 7 SLLAFGAGAAAYQMAQ 22 (43)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 4677888999999873
No 10
>PRK13755 putative mercury transport protein MerC; Provisional
Probab=40.16 E-value=34 Score=25.19 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHhhhhh
Q 048115 9 VYPLMAAMTFVASMCVFQLTRN 30 (94)
Q Consensus 9 vyPL~~avgvAvg~~~~~~~R~ 30 (94)
++|||+++....-+.+|+.-|+
T Consensus 53 LlPlFA~iALlanalgW~sHRQ 74 (139)
T PRK13755 53 LLPLFAAIALLANALGWFSHRQ 74 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888877777777664
No 11
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=38.86 E-value=8.8 Score=26.14 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCceeeecCCCCCcccch-hHhhhhhhhhh
Q 048115 12 LMAAMTFVASMCVFQLTRNVLLNPDVRINKGRRSMGVLEN-EEEGEKYAEHG 62 (94)
Q Consensus 12 L~~avgvAvg~~~~~~~R~l~~nP~vRv~K~~R~~gv~en-~~EG~~y~~H~ 62 (94)
|++.+++.+++|++.++--+.+.+++ +.++ +++|..|.+..
T Consensus 8 ii~~~~~~v~~~~~~v~~A~~~~~~l----------V~~dYY~~g~~y~~~i 49 (146)
T PF05751_consen 8 IIAFFAVFVVANVTMVYIAISTPDGL----------VVDDYYEKGLAYNQDI 49 (146)
T ss_pred hHHhhhhEeeeeeeEEeeeccCCCCc----------eeccHHHhhhhhhhhh
Confidence 34445555666666666544444433 3345 59999998664
No 12
>PRK13887 conjugal transfer protein TrbF; Provisional
Probab=37.52 E-value=72 Score=24.43 Aligned_cols=15 Identities=7% Similarity=0.270 Sum_probs=9.0
Q ss_pred hhhhhhhhhhHhhhc
Q 048115 55 GEKYAEHGLRRFLRT 69 (94)
Q Consensus 55 G~~y~~H~~Rr~~~~ 69 (94)
.+.-.+|.+.+|++.
T Consensus 108 ~ea~~~~~L~~fV~~ 122 (250)
T PRK13887 108 DPRVIHAAVADFIEN 122 (250)
T ss_pred CHHHHHHHHHHHHHh
Confidence 344556667667764
No 13
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=36.64 E-value=60 Score=21.35 Aligned_cols=23 Identities=4% Similarity=0.131 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhccC
Q 048115 12 LMAAMTFVASMCVFQLTRNVLLN 34 (94)
Q Consensus 12 L~~avgvAvg~~~~~~~R~l~~n 34 (94)
|++++.+++|+..|.++++-..+
T Consensus 7 Li~ICVaii~lIlY~iYnr~~~~ 29 (68)
T PF05961_consen 7 LIIICVAIIGLILYGIYNRKKTT 29 (68)
T ss_pred HHHHHHHHHHHHHHHHHhccccc
Confidence 56677778889999999865544
No 14
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.44 E-value=23 Score=23.43 Aligned_cols=28 Identities=14% Similarity=0.299 Sum_probs=14.7
Q ss_pred ccCcchhhHHHHHHHHHHHHHHhhhhhhccC
Q 048115 4 WMRPEVYPLMAAMTFVASMCVFQLTRNVLLN 34 (94)
Q Consensus 4 Wi~pEvyPL~~avgvAvg~~~~~~~R~l~~n 34 (94)
|+--=+++|...+|+++ +|+++|+.+..
T Consensus 4 ~lail~ivl~ll~G~~~---G~fiark~~~k 31 (71)
T COG3763 4 WLAILLIVLALLAGLIG---GFFIARKQMKK 31 (71)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 43333344444444443 48888877654
No 15
>COG3766 Predicted membrane protein [Function unknown]
Probab=36.19 E-value=22 Score=26.10 Aligned_cols=38 Identities=24% Similarity=0.451 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCceeeecCCCCCccc
Q 048115 12 LMAAMTFVASMCVFQLTRNVLLNPDVRINKGRRSMGVL 49 (94)
Q Consensus 12 L~~avgvAvg~~~~~~~R~l~~nP~vRv~K~~R~~gv~ 49 (94)
..+++|.++=+.+|+.+|-++.|=+.+++..++++|.+
T Consensus 78 ~Wg~~~~vvqLl~f~i~~~l~p~l~~~I~ngn~AaG~~ 115 (133)
T COG3766 78 AWGAIALVVQLLVFFIVRLLMPDLDEKIENGNVAAGFI 115 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccHHHHhcCcchHHHH
Confidence 46789999999999999999999999999999988854
No 16
>PF09919 DUF2149: Uncharacterized conserved protein (DUF2149); InterPro: IPR018676 This family of conserved hypothetical proteins has no known function.
Probab=35.64 E-value=39 Score=22.80 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhhhhhccCCceeeecCCCCC
Q 048115 14 AAMTFVASMCVFQLTRNVLLNPDVRINKGRRSM 46 (94)
Q Consensus 14 ~avgvAvg~~~~~~~R~l~~nP~vRv~K~~R~~ 46 (94)
+|+|+-+.+......-.++.+.|+.+.|++.+.
T Consensus 14 fav~llvalv~~~n~~~~~s~~~~t~~~~~~~~ 46 (92)
T PF09919_consen 14 FAVGLLVALVMSWNMQEVFSDEDVTIVKNPGQP 46 (92)
T ss_pred HHHHHHHHHHHhcCCccccccccceeeccCCcc
Confidence 344444444333333345578888888776664
No 17
>PF12454 Ecm33: GPI-anchored cell wall organization protein
Probab=31.73 E-value=76 Score=18.76 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhccCCceeeecCCCCCc
Q 048115 9 VYPLMAAMTFVASMCVFQLTRNVLLNPDVRINKGRRSMG 47 (94)
Q Consensus 9 vyPL~~avgvAvg~~~~~~~R~l~~nP~vRv~K~~R~~g 47 (94)
+.|.+++.|.|.+.- .|...+..|.-|..+++
T Consensus 7 ~lpAlaaag~a~A~s-------~C~~~t~tI~nQ~Da~~ 38 (40)
T PF12454_consen 7 LLPALAAAGAAAAAS-------SCSGGTTTIENQADATA 38 (40)
T ss_pred HHHHHHHHHHHHHhc-------cCCCCceeeeccccchh
Confidence 568888887766542 44566777777776654
No 18
>PF11084 DUF2621: Protein of unknown function (DUF2621); InterPro: IPR020203 This entry represents a group of uncharacterised proteins.
Probab=31.60 E-value=53 Score=24.30 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhccCCceeeecCCCCC
Q 048115 10 YPLMAAMTFVASMCVFQLTRNVLLNPDVRINKGRRSM 46 (94)
Q Consensus 10 yPL~~avgvAvg~~~~~~~R~l~~nP~vRv~K~~R~~ 46 (94)
.--.+++-+.+++++|++.|+++. |+-|++-.+
T Consensus 11 ~~W~~vli~l~~IGGfFMFRKFLK----~lPKeDGkS 43 (141)
T PF11084_consen 11 LFWVVVLIGLMAIGGFFMFRKFLK----RLPKEDGKS 43 (141)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH----hCCcccCcc
Confidence 334556667789999999999975 455555444
No 19
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=30.36 E-value=69 Score=22.10 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhhhhhc-cCCceeeecC
Q 048115 14 AAMTFVASMCVFQLTRNVL-LNPDVRINKG 42 (94)
Q Consensus 14 ~avgvAvg~~~~~~~R~l~-~nP~vRv~K~ 42 (94)
+++-+-+|+..|-+||.-+ +.|+++.+|+
T Consensus 10 ~V~V~IVclliya~YRR~~i~~p~~~r~~D 39 (92)
T PHA02681 10 VIVISIVCYIVIMMYRRSCVSAPAVPRNKD 39 (92)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCcccc
Confidence 5566678888999999887 5688774443
No 20
>PF08602 Mgr1: Mgr1-like, i-AAA protease complex subunit; InterPro: IPR013911 The Saccharomyces cerevisiae (Baker's yeast) Mgr1 protein has been shown to be required for mitochondrial viability in yeast lacking mitochondrial DNA. It is a mitochondrial inner membrane protein, which interacts with Yme1 and is a new subunit of the i-AAA protease complex [, ].
Probab=30.23 E-value=76 Score=26.70 Aligned_cols=17 Identities=12% Similarity=0.342 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhhhhhh
Q 048115 15 AMTFVASMCVFQLTRNV 31 (94)
Q Consensus 15 avgvAvg~~~~~~~R~l 31 (94)
++=+++|+.+|.-+|.|
T Consensus 62 ~~Q~~~Gl~~~~r~R~l 78 (363)
T PF08602_consen 62 GLQTAVGLFCFRRARRL 78 (363)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34467777788888877
No 21
>PRK11677 hypothetical protein; Provisional
Probab=29.82 E-value=34 Score=24.71 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=11.3
Q ss_pred HHHHHHHH-HHHHhhhhhhccCCce
Q 048115 14 AAMTFVAS-MCVFQLTRNVLLNPDV 37 (94)
Q Consensus 14 ~avgvAvg-~~~~~~~R~l~~nP~v 37 (94)
+++|+++| +++|++.| + +++.+
T Consensus 6 a~i~livG~iiG~~~~R-~-~~~~~ 28 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMR-F-GNRKL 28 (134)
T ss_pred HHHHHHHHHHHHHHHHh-h-ccchh
Confidence 34444444 45666667 3 45444
No 22
>PF15114 UPF0640: Uncharacterised protein family UPF0640
Probab=29.68 E-value=31 Score=22.73 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHH
Q 048115 9 VYPLMAAMTFVA 20 (94)
Q Consensus 9 vyPL~~avgvAv 20 (94)
.+|||.++|.|+
T Consensus 26 FLP~FF~lGaal 37 (69)
T PF15114_consen 26 FLPLFFVLGAAL 37 (69)
T ss_pred hhHHHHHhhhhh
Confidence 479999999876
No 23
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=29.20 E-value=50 Score=23.35 Aligned_cols=17 Identities=24% Similarity=0.169 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhhhhhhc
Q 048115 16 MTFVASMCVFQLTRNVL 32 (94)
Q Consensus 16 vgvAvg~~~~~~~R~l~ 32 (94)
++|.+..+.|+|+|+.+
T Consensus 30 vavGl~aGLfFcvR~~l 46 (106)
T PF14654_consen 30 VAVGLFAGLFFCVRNSL 46 (106)
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 34445566789999743
No 24
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=28.86 E-value=62 Score=23.17 Aligned_cols=30 Identities=30% Similarity=0.446 Sum_probs=26.5
Q ss_pred cCcchhhHHHHHHHHHHHHHHhhhhhhccC
Q 048115 5 MRPEVYPLMAAMTFVASMCVFQLTRNVLLN 34 (94)
Q Consensus 5 i~pEvyPL~~avgvAvg~~~~~~~R~l~~n 34 (94)
|.|.=|.||++=.+-.+..++|++|.+.++
T Consensus 67 I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~ 96 (119)
T PF03650_consen 67 ITPRNYLLFACNFFNATTQLYQLYRKLNYQ 96 (119)
T ss_pred ecCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999888999999999988766
No 25
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.30 E-value=30 Score=24.18 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=6.9
Q ss_pred HHHHHHHH-HHHhhhh
Q 048115 15 AMTFVASM-CVFQLTR 29 (94)
Q Consensus 15 avgvAvg~-~~~~~~R 29 (94)
++|+++|+ ++|.+.|
T Consensus 3 ~i~lvvG~iiG~~~~r 18 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGR 18 (128)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 33444433 4455555
No 26
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=28.26 E-value=75 Score=21.50 Aligned_cols=18 Identities=11% Similarity=0.056 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 048115 12 LMAAMTFVASMCVFQLTR 29 (94)
Q Consensus 12 L~~avgvAvg~~~~~~~R 29 (94)
+.++.|+.+++|+|-.++
T Consensus 7 v~~~~~v~~~i~~y~~~k 24 (87)
T PF10883_consen 7 VGGVGAVVALILAYLWWK 24 (87)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457778888888887775
No 27
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=27.80 E-value=63 Score=25.46 Aligned_cols=23 Identities=9% Similarity=-0.009 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhccC
Q 048115 12 LMAAMTFVASMCVFQLTRNVLLN 34 (94)
Q Consensus 12 L~~avgvAvg~~~~~~~R~l~~n 34 (94)
|-.|.|||.|+..+..+++|+.+
T Consensus 142 ~~TAAGVAGG~lL~n~i~~lF~~ 164 (247)
T PF09849_consen 142 AQTAAGVAGGMLLANGIESLFGG 164 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 45689999999999999999987
No 28
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=26.81 E-value=56 Score=24.65 Aligned_cols=15 Identities=20% Similarity=0.616 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhhhhh
Q 048115 16 MTFVASMCVFQLTRN 30 (94)
Q Consensus 16 vgvAvg~~~~~~~R~ 30 (94)
++++++.|+|++.|+
T Consensus 121 Lal~~~~~iyfl~~K 135 (194)
T PF11833_consen 121 LALGLGACIYFLNRK 135 (194)
T ss_pred HHHHHHHHHHHHHHh
Confidence 567778999999996
No 29
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=26.79 E-value=64 Score=19.50 Aligned_cols=27 Identities=7% Similarity=0.037 Sum_probs=17.4
Q ss_pred CcchhhHHHHHHH-HHHHHHHhhhhhhc
Q 048115 6 RPEVYPLMAAMTF-VASMCVFQLTRNVL 32 (94)
Q Consensus 6 ~pEvyPL~~avgv-Avg~~~~~~~R~l~ 32 (94)
|-.|+=.|+.||+ ++++.+.+.+||..
T Consensus 7 p~GVIlVF~lVglv~i~iva~~iYRKw~ 34 (43)
T PF08114_consen 7 PGGVILVFCLVGLVGIGIVALFIYRKWQ 34 (43)
T ss_pred CCCeeeehHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666664 46777888888764
No 30
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=26.21 E-value=1e+02 Score=18.27 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHh---hhhhhccCC
Q 048115 15 AMTFVASMCVFQ---LTRNVLLNP 35 (94)
Q Consensus 15 avgvAvg~~~~~---~~R~l~~nP 35 (94)
++.+++|+++|+ ..||...|+
T Consensus 18 vI~~~igm~~~~~~~F~~k~~~~~ 41 (42)
T PF11346_consen 18 VIVFTIGMGVFFIRYFIRKMKEDE 41 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccC
Confidence 344455555554 346666654
No 31
>PF06450 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterPro: IPR004671 The Escherichia coli NhaB Na+:H+ Antiporter (NhaB) protein has 12 predicted TMS, and catalyses sodium/proton exchange. Unlike NhaA, IPR004670 from INTERPRO, this activity is not pH dependent.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0016021 integral to membrane
Probab=25.83 E-value=26 Score=30.46 Aligned_cols=50 Identities=14% Similarity=0.215 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhhhhhccCCceeeecCCCCCcccchhHhhhhhhhhhhhHhhhc
Q 048115 17 TFVASMCVFQLTRNVLLNPDVRINKGRRSMGVLENEEEGEKYAEHGLRRFLRT 69 (94)
Q Consensus 17 gvAvg~~~~~~~R~l~~nP~vRv~K~~R~~gv~en~~EG~~y~~H~~Rr~~~~ 69 (94)
-.+|+.+-|+.|++..++.+..=+.+...+. ..+|..+=.-..+|-|+|+
T Consensus 155 iIsVa~GFY~iYHkvaSg~~~~~~~d~~~D~---~v~~~~r~~Le~FRaFLRs 204 (515)
T PF06450_consen 155 IISVAVGFYSIYHKVASGKDFHDDHDHTDDS---KVDELNREDLEQFRAFLRS 204 (515)
T ss_pred eeEeeehhhhhhhhhhcCCCCCCccCCccch---hhhhhhHHHHHHHHHHHHH
Confidence 3455667899999999998875332222221 1222222222356888887
No 32
>PF14962 AIF-MLS: Mitochondria Localisation Sequence; PDB: 1M6I_A.
Probab=25.48 E-value=23 Score=27.01 Aligned_cols=27 Identities=7% Similarity=-0.026 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhccCCc
Q 048115 10 YPLMAAMTFVASMCVFQLTRNVLLNPD 36 (94)
Q Consensus 10 yPL~~avgvAvg~~~~~~~R~l~~nP~ 36 (94)
.-+++.||+.+..++|+.||-|..|..
T Consensus 46 ~~Y~l~vG~t~~gag~YaYkTv~~dq~ 72 (180)
T PF14962_consen 46 MVYYLVVGVTVSGAGYYAYKTVKSDQA 72 (180)
T ss_dssp ---------------------------
T ss_pred EEEEEEECeEEEeeEEEEEEeecchhH
Confidence 346788999999999999997776643
No 33
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=25.43 E-value=72 Score=19.48 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhhhhh
Q 048115 15 AMTFVASMCVFQLTRN 30 (94)
Q Consensus 15 avgvAvg~~~~~~~R~ 30 (94)
.+|+++|.++|+++-+
T Consensus 10 ~~av~iG~~ayyl~e~ 25 (47)
T PF11654_consen 10 LFAVFIGTSAYYLYEN 25 (47)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567788899998864
No 34
>PF12286 DUF3622: Protein of unknown function (DUF3622); InterPro: IPR022069 This family of proteins is found in bacteria. Proteins in this family are typically between 72 and 107 amino acids in length. There is a conserved VSK sequence motif.
Probab=25.23 E-value=58 Score=21.57 Aligned_cols=41 Identities=29% Similarity=0.467 Sum_probs=29.0
Q ss_pred hhhhhhccCCceeeecCCCCCcccchhHhhhhhhhhhhhHhhhcC
Q 048115 26 QLTRNVLLNPDVRINKGRRSMGVLENEEEGEKYAEHGLRRFLRTR 70 (94)
Q Consensus 26 ~~~R~l~~nP~vRv~K~~R~~gv~en~~EG~~y~~H~~Rr~~~~~ 70 (94)
-++|+++....|.-. |+.|.. ..+|++.|.++-|.-||.++
T Consensus 21 EItR~vTsrkTvVSK---~~~GF~-SEaeAq~W~e~eL~~fl~n~ 61 (71)
T PF12286_consen 21 EITRRVTSRKTVVSK---RQDGFA-SEAEAQAWGEKELKSFLENQ 61 (71)
T ss_pred eeeeeecCceeEEEe---cccCcc-cHHHHHHHHHHHHHHHHHHH
Confidence 456777776665432 445533 57999999999999999763
No 35
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=24.97 E-value=82 Score=19.60 Aligned_cols=16 Identities=19% Similarity=-0.145 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHhh
Q 048115 12 LMAAMTFVASMCVFQL 27 (94)
Q Consensus 12 L~~avgvAvg~~~~~~ 27 (94)
+.+++|+++|.++-.+
T Consensus 3 ~g~l~Ga~~Ga~~glL 18 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLL 18 (74)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566777777766655
No 36
>PF15050 SCIMP: SCIMP protein
Probab=24.95 E-value=1.2e+02 Score=22.33 Aligned_cols=64 Identities=16% Similarity=0.345 Sum_probs=35.1
Q ss_pred ccCcchhhHHHHHHHHHHHHHHhhhh-hhccCCceeeecCCCCCcccchhHhhhhhhhhhhhHhhhcCCCCcccccc
Q 048115 4 WMRPEVYPLMAAMTFVASMCVFQLTR-NVLLNPDVRINKGRRSMGVLENEEEGEKYAEHGLRRFLRTRPPQVMPAIN 79 (94)
Q Consensus 4 Wi~pEvyPL~~avgvAvg~~~~~~~R-~l~~nP~vRv~K~~R~~gv~en~~EG~~y~~H~~Rr~~~~~~p~imp~~n 79 (94)
||--.|- ++.|++.+|+..|-..| +|.....-.+.|--++.+ -+|.+.|. + +-+++|--.|.|+
T Consensus 9 WiiLAVa--II~vS~~lglIlyCvcR~~lRqGkkweiakp~k~~~----rdeEkmYE-N-----v~n~~~~~LPpLP 73 (133)
T PF15050_consen 9 WIILAVA--IILVSVVLGLILYCVCRWQLRQGKKWEIAKPLKQKQ----RDEEKMYE-N-----VLNQSPVQLPPLP 73 (133)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHccccceeccchhhhc----ccHHHHHH-H-----hhcCCcCCCCCCC
Confidence 4433333 45667777777776554 455555555555444432 34555554 3 4566665555553
No 37
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=24.89 E-value=33 Score=22.90 Aligned_cols=10 Identities=40% Similarity=0.680 Sum_probs=8.5
Q ss_pred hcCCCCcccc
Q 048115 68 RTRPPQVMPA 77 (94)
Q Consensus 68 ~~~~p~imp~ 77 (94)
.+++|+|||.
T Consensus 41 ~~rkPWI~Pd 50 (74)
T COG3592 41 LGRKPWIMPD 50 (74)
T ss_pred cCCCCccCCC
Confidence 5689999996
No 38
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=24.39 E-value=80 Score=21.70 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=16.9
Q ss_pred cchhhHH-HHHHHHHHHHHHhhhh
Q 048115 7 PEVYPLM-AAMTFVASMCVFQLTR 29 (94)
Q Consensus 7 pEvyPL~-~avgvAvg~~~~~~~R 29 (94)
|++=|+. +.+|.|+|+++||.+-
T Consensus 57 Pdl~plAv~GlgsalGI~G~q~vE 80 (89)
T PF04550_consen 57 PDLPPLAVIGLGSALGIAGYQAVE 80 (89)
T ss_pred CCCCHHHHHHHHHHHHhhhHHHHH
Confidence 5665654 4578899999998763
No 39
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=24.08 E-value=67 Score=27.87 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhhhhhccCC
Q 048115 13 MAAMTFVASMCVFQLTRNVLLNP 35 (94)
Q Consensus 13 ~~avgvAvg~~~~~~~R~l~~nP 35 (94)
.++.||++++|+..+++ ++.||
T Consensus 368 AAVtGv~IAaa~m~lss-~tgnP 389 (503)
T KOG2802|consen 368 AAVTGVIIAAACMGLSS-ITGNP 389 (503)
T ss_pred HHHHHHHHHHHHHHHHH-hcCCC
Confidence 47789999999999998 77777
No 40
>PF08009 CDP-OH_P_tran_2: CDP-alcohol phosphatidyltransferase 2; InterPro: IPR012616 This domain is found on CDP-alcohol phosphatidyltransferases. These enzymes catalyse the displacement of CMP from a CDP-alcohol by a second alcohol with formation of a phosphodiester bond and concomitant breaking of a phosphoride anhydride bond.
Probab=24.07 E-value=86 Score=18.26 Aligned_cols=14 Identities=29% Similarity=0.543 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHHHH
Q 048115 9 VYPLMAAMTFVASM 22 (94)
Q Consensus 9 vyPL~~avgvAvg~ 22 (94)
++|+++.+|+.+++
T Consensus 5 vlpl~~~v~l~~a~ 18 (39)
T PF08009_consen 5 VLPLILLVGLYAAL 18 (39)
T ss_pred ehHHHHHHHHHHHH
Confidence 68888777765544
No 41
>PF13400 Tad: Putative Flp pilus-assembly TadE/G-like
Probab=23.45 E-value=1.3e+02 Score=17.19 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhh
Q 048115 9 VYPLMAAMTFVASMCVFQLTR 29 (94)
Q Consensus 9 vyPL~~avgvAvg~~~~~~~R 29 (94)
+.|+++.+|+++-..-....|
T Consensus 11 ~~~~l~~~~~~id~~~~~~~r 31 (48)
T PF13400_consen 11 LVPLLLLIGLAIDVGRAYLAR 31 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356666777766665555554
No 42
>PRK11089 PTS system glucose-specific transporter subunits IIBC; Provisional
Probab=22.78 E-value=56 Score=27.93 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHH
Q 048115 10 YPLMAAMTFVASMC 23 (94)
Q Consensus 10 yPL~~avgvAvg~~ 23 (94)
.||+.|||+|+|++
T Consensus 59 LpllFavgia~g~a 72 (477)
T PRK11089 59 MPLIFAIGVALGFT 72 (477)
T ss_pred cHHHHHHHHHHHHh
Confidence 69999999999877
No 43
>PF14990 DUF4516: Domain of unknown function (DUF4516)
Probab=22.60 E-value=1.1e+02 Score=18.59 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhccCCceeee
Q 048115 10 YPLMAAMTFVASMCVFQLTRNVLLNPDVRIN 40 (94)
Q Consensus 10 yPL~~avgvAvg~~~~~~~R~l~~nP~vRv~ 40 (94)
|-.++++.++.-+++-++++ ...-||+.+-
T Consensus 10 yl~~~~~s~~sM~aGA~vVH-~~ykPdltiP 39 (47)
T PF14990_consen 10 YLKSLVASLLSMLAGASVVH-NIYKPDLTIP 39 (47)
T ss_pred HHHHHHHHHHHHHhhhHHHH-HHhCccCCCC
Confidence 44555555555555666665 6678888763
No 44
>TIGR02005 PTS-IIBC-alpha PTS system, alpha-glucoside-specific IIBC component. This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose.
Probab=21.64 E-value=57 Score=28.22 Aligned_cols=14 Identities=14% Similarity=0.365 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHH
Q 048115 10 YPLMAAMTFVASMC 23 (94)
Q Consensus 10 yPL~~avgvAvg~~ 23 (94)
+||+.|||+|+|++
T Consensus 65 LpllFAvgia~Gla 78 (524)
T TIGR02005 65 MPLIFVVGLPIGLA 78 (524)
T ss_pred chHHHHHHHHHHhc
Confidence 79999999998765
No 45
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=21.55 E-value=31 Score=25.25 Aligned_cols=17 Identities=6% Similarity=0.045 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhh
Q 048115 12 LMAAMTFVASMCVFQLT 28 (94)
Q Consensus 12 L~~avgvAvg~~~~~~~ 28 (94)
|.+.+|+|++.++|.-.
T Consensus 48 lvllvGiaMAv~GYwp~ 64 (141)
T PF10177_consen 48 LVLLVGIAMAVLGYWPK 64 (141)
T ss_pred HHHHHhhHhheeecccc
Confidence 45667777777787665
No 46
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=21.41 E-value=1.1e+02 Score=20.98 Aligned_cols=24 Identities=4% Similarity=-0.075 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCC
Q 048115 12 LMAAMTFVASMCVFQLTRNVLLNP 35 (94)
Q Consensus 12 L~~avgvAvg~~~~~~~R~l~~nP 35 (94)
+.+++.+++++.+|+.+.++...|
T Consensus 10 ~~v~~vv~~~~~~w~~~~~~~~~~ 33 (112)
T PF14155_consen 10 GAVLVVVAGAVVAWFGYSQFGSPP 33 (112)
T ss_pred HHHHHHHHHHHHhHhhhhhccCCC
Confidence 455566667777888887665443
No 47
>KOG3491 consensus Predicted membrane protein [Function unknown]
Probab=21.23 E-value=93 Score=20.22 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhc
Q 048115 12 LMAAMTFVASMCVFQLTRNVL 32 (94)
Q Consensus 12 L~~avgvAvg~~~~~~~R~l~ 32 (94)
|...|=|+.|++.|+.+|...
T Consensus 42 lglFvFVVcGSa~FqIIr~~~ 62 (65)
T KOG3491|consen 42 LGLFVFVVCGSALFQIIRTAT 62 (65)
T ss_pred HHHHHHHhhcHHHHHHHHHHh
Confidence 344455678899999999654
No 48
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=20.86 E-value=1.2e+02 Score=20.55 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHhhh
Q 048115 10 YPLMAAMTFVASMCVFQLT 28 (94)
Q Consensus 10 yPL~~avgvAvg~~~~~~~ 28 (94)
|...++.-+++|+|+|..+
T Consensus 4 ~~~~~l~~lvl~L~~~l~~ 22 (110)
T PF10828_consen 4 YIYIALAVLVLGLGGWLWY 22 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555556667766554
No 49
>TIGR02003 PTS-II-BC-unk1 PTS system, IIBC component. This model represents a family of fused B and C components of PTS enzyme II. This clade is a member of a larger family which contains enzyme II's specific for a variety of sugars including glucose (TIGR02002) and N-acetylglucosamine (TIGR01998). None of the members of this clade have been experimentally characterized. This clade includes sequences from Streptococcus and Enterococcus which also include a C-terminal A domain as well as Bacillus and Clostridium which do not. In nearly all cases, these species also contain an authentic glucose-specific PTS transporter.
Probab=20.54 E-value=67 Score=28.01 Aligned_cols=14 Identities=14% Similarity=0.190 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHH
Q 048115 10 YPLMAAMTFVASMC 23 (94)
Q Consensus 10 yPL~~avgvAvg~~ 23 (94)
.||+.|||+|+|++
T Consensus 63 LpllFAigiaiGla 76 (548)
T TIGR02003 63 LHILFALAIGGSWA 76 (548)
T ss_pred chHHHHHHHHHHHh
Confidence 79999999999876
No 50
>PF10269 Tmemb_185A: Transmembrane Fragile-X-F protein ; InterPro: IPR019396 This entry represents conserved transmembrane proteins that in humans are expressed from a region upstream of the FragileXF site and appear to be intimately linked with Fragile-X syndrome. The absence of the human TMEM185A protein does not necessarily lead to developmental delay, but might, in combination with other, currently unknown, factors. Alternatively, the TMEM185A protein is either redundant, or its function can be complemented by the highly similar chromosome 2 retro-pseudogene product, TMEM185B [].
Probab=20.23 E-value=72 Score=24.28 Aligned_cols=22 Identities=18% Similarity=0.452 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhhh
Q 048115 10 YPLMAAMTFVASMCVFQLTRNV 31 (94)
Q Consensus 10 yPL~~avgvAvg~~~~~~~R~l 31 (94)
.||+++.|.++..|.+.+.+.+
T Consensus 151 iPl~i~~~~~~~~~~~~~i~~~ 172 (238)
T PF10269_consen 151 IPLWIADGLAFLVCLYSIIMSI 172 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999988877754
No 51
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=20.19 E-value=1.2e+02 Score=21.09 Aligned_cols=21 Identities=5% Similarity=0.317 Sum_probs=16.7
Q ss_pred chhhHHHHHHHHHHHHHHhhh
Q 048115 8 EVYPLMAAMTFVASMCVFQLT 28 (94)
Q Consensus 8 EvyPL~~avgvAvg~~~~~~~ 28 (94)
-.+|+|.++|.+..+++.++.
T Consensus 33 ~~W~~FL~~Gi~~~~~Sl~~~ 53 (94)
T PF14898_consen 33 RIWPIFLLAGIACIIASLFVS 53 (94)
T ss_pred CcHHHHHHHHHHHHHHHHHHc
Confidence 468999999998888776654
No 52
>PLN02949 transferase, transferring glycosyl groups
Probab=20.14 E-value=1e+02 Score=25.65 Aligned_cols=39 Identities=13% Similarity=0.313 Sum_probs=25.2
Q ss_pred CCccCcchhhHHHHHHHHHHHHHH--hhhhhhccCCceeeecC
Q 048115 2 GRWMRPEVYPLMAAMTFVASMCVF--QLTRNVLLNPDVRINKG 42 (94)
Q Consensus 2 ~rWi~pEvyPL~~avgvAvg~~~~--~~~R~l~~nP~vRv~K~ 42 (94)
+.|+++..||-|-.+|-++|+... ...++ .-|+|-++--
T Consensus 107 ~~~~~~~~~~~~t~~~~~~~~~~l~~~~~~~--~~p~v~vDt~ 147 (463)
T PLN02949 107 RKWIEEETYPRFTMIGQSLGSVYLAWEALCK--FTPLYFFDTS 147 (463)
T ss_pred ccccccccCCceehHHHHHHHHHHHHHHHHh--cCCCEEEeCC
Confidence 579999999998877777765433 22232 2456666444
Done!