Query 048115
Match_columns 94
No_of_seqs 122 out of 131
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 10:50:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048115.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048115hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ifo_A Inovirus; helical virus 33.5 35 0.0012 19.9 2.6 18 14-31 28-45 (46)
2 2y69_J Cytochrome C oxidase po 28.4 50 0.0017 21.1 2.9 21 9-29 52-73 (80)
3 1v54_J Cytochrome C oxidase po 27.1 58 0.002 19.5 2.9 21 9-29 31-52 (59)
4 1v2x_A TRNA (GM18) methyltrans 24.3 45 0.0015 23.3 2.4 42 16-65 153-194 (194)
5 3ic6_A Putative methylase fami 22.2 84 0.0029 23.0 3.6 16 16-31 179-194 (223)
6 2h3o_A MERF; membrane protein, 21.0 53 0.0018 20.2 1.9 19 10-28 13-31 (61)
7 1v54_D Cytochrome C oxidase su 19.0 86 0.003 22.0 2.9 21 15-35 86-106 (147)
8 2k1k_A Ephrin type-A receptor 17.6 98 0.0033 16.9 2.4 7 23-29 30-36 (38)
9 3e5y_A TRMH family RNA methylt 15.8 80 0.0027 21.2 2.1 16 16-31 139-154 (160)
10 3n4j_A RNA methyltransferase; 14.8 88 0.003 21.2 2.1 16 16-31 141-156 (165)
No 1
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=33.50 E-value=35 Score=19.86 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 048115 14 AAMTFVASMCVFQLTRNV 31 (94)
Q Consensus 14 ~avgvAvg~~~~~~~R~l 31 (94)
+++|+.+++.+|..+|..
T Consensus 28 aVLgV~v~i~v~k~IRra 45 (46)
T 2ifo_A 28 AVLTVMVGIKVYKWVRRA 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 578888999999998864
No 2
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=28.37 E-value=50 Score=21.09 Aligned_cols=21 Identities=10% Similarity=0.240 Sum_probs=14.0
Q ss_pred hhhHHHHHHH-HHHHHHHhhhh
Q 048115 9 VYPLMAAMTF-VASMCVFQLTR 29 (94)
Q Consensus 9 vyPL~~avgv-Avg~~~~~~~R 29 (94)
+|+..+++++ +++.|.|+++.
T Consensus 52 Ly~~t~~l~~~G~~~~ly~l~~ 73 (80)
T 2y69_J 52 LYRVTMTLCLGGTLYSLYCLGW 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5776666554 66777777765
No 3
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=27.07 E-value=58 Score=19.49 Aligned_cols=21 Identities=10% Similarity=0.240 Sum_probs=12.7
Q ss_pred hhhHHHHHHH-HHHHHHHhhhh
Q 048115 9 VYPLMAAMTF-VASMCVFQLTR 29 (94)
Q Consensus 9 vyPL~~avgv-Avg~~~~~~~R 29 (94)
+|+..+++++ +++.|.|+++.
T Consensus 31 Ly~~t~~l~~~g~~~~~y~l~~ 52 (59)
T 1v54_J 31 LYRVTMTLCLGGTLYSLYCLGW 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5766555544 56666676665
No 4
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Probab=24.26 E-value=45 Score=23.25 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhhhhhccCCceeeecCCCCCcccchhHhhhhhhhhhhhH
Q 048115 16 MTFVASMCVFQLTRNVLLNPDVRINKGRRSMGVLENEEEGEKYAEHGLRR 65 (94)
Q Consensus 16 vgvAvg~~~~~~~R~l~~nP~vRv~K~~R~~gv~en~~EG~~y~~H~~Rr 65 (94)
+++|++++.|.+.|+... +. .-..+.+ ..+|-+....|++||
T Consensus 153 vs~AaaI~lye~~rq~~~-~~------~~~~~~~-~~~e~~~l~~~~~~~ 194 (194)
T 1v2x_A 153 VSVAAAVILFEAQRQRLK-AG------LYDRPRL-DPELYQKVLADWLRK 194 (194)
T ss_dssp HHHHHHHHHHHHHHHHHH-HT------GGGSCCS-CHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhcc-cC------CcCCCCC-CHHHHHHHHHHHhhC
Confidence 578888999998876421 11 0001111 246667777777765
No 5
>3ic6_A Putative methylase family protein; putative methylase family Pro structural genomics, PSI-2, protein structure initiative; 2.59A {Neisseria gonorrhoeae fa 1090}
Probab=22.17 E-value=84 Score=23.02 Aligned_cols=16 Identities=0% Similarity=0.225 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhhhhh
Q 048115 16 MTFVASMCVFQLTRNV 31 (94)
Q Consensus 16 vgvAvg~~~~~~~R~l 31 (94)
+++|++++.|-+.|+.
T Consensus 179 va~A~aI~lye~~rq~ 194 (223)
T 3ic6_A 179 LAQAVQVVCYEIFSQT 194 (223)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5788999999999987
No 6
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=20.98 E-value=53 Score=20.21 Aligned_cols=19 Identities=11% Similarity=0.151 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHhhh
Q 048115 10 YPLMAAMTFVASMCVFQLT 28 (94)
Q Consensus 10 yPL~~avgvAvg~~~~~~~ 28 (94)
.|+++.+..++|++++..+
T Consensus 13 tPvLvil~G~~Glsa~~~w 31 (61)
T 2h3o_A 13 TPVLVILLGVVGLSALTGY 31 (61)
T ss_dssp ---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHH
Confidence 6888877777887777654
No 7
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=19.04 E-value=86 Score=22.02 Aligned_cols=21 Identities=5% Similarity=0.115 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhhhhhhccCC
Q 048115 15 AMTFVASMCVFQLTRNVLLNP 35 (94)
Q Consensus 15 avgvAvg~~~~~~~R~l~~nP 35 (94)
.+++++++..|...|.+..+|
T Consensus 86 ~~~i~~s~~~f~~~r~~v~~p 106 (147)
T 1v54_D 86 MFFIGFTALLLIWEKHYVYGP 106 (147)
T ss_dssp HHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHccCC
Confidence 344566777777788776654
No 8
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=17.58 E-value=98 Score=16.88 Aligned_cols=7 Identities=14% Similarity=0.107 Sum_probs=3.3
Q ss_pred HHHhhhh
Q 048115 23 CVFQLTR 29 (94)
Q Consensus 23 ~~~~~~R 29 (94)
.+|++.|
T Consensus 30 l~~~~~r 36 (38)
T 2k1k_A 30 ILVFRSR 36 (38)
T ss_dssp HHHHHHC
T ss_pred HHHHHee
Confidence 3455544
No 9
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} SCOP: c.116.1.0
Probab=15.80 E-value=80 Score=21.25 Aligned_cols=16 Identities=19% Similarity=0.354 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhhhhh
Q 048115 16 MTFVASMCVFQLTRNV 31 (94)
Q Consensus 16 vgvAvg~~~~~~~R~l 31 (94)
+++|++++.|.+.|+.
T Consensus 139 vsvAaaI~lye~~rq~ 154 (160)
T 3e5y_A 139 LSNTVAVVVFEAWRQA 154 (160)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5789999999999874
No 10
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} SCOP: c.116.1.1 PDB: 3n4k_A* 1mxi_A* 1j85_A*
Probab=14.75 E-value=88 Score=21.20 Aligned_cols=16 Identities=19% Similarity=0.374 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhhhhh
Q 048115 16 MTFVASMCVFQLTRNV 31 (94)
Q Consensus 16 vgvAvg~~~~~~~R~l 31 (94)
+++|++++.|.+.|+.
T Consensus 141 vavAaaI~lye~~rq~ 156 (165)
T 3n4j_A 141 LSNAVSVVVYEAWRQL 156 (165)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5789999999999874
Done!