Query 048115
Match_columns 94
No_of_seqs 122 out of 131
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 10:50:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048115.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048115hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54d_ f.23.1.1 (D:) Mitochon 28.5 21 0.0015 23.5 2.9 22 14-35 82-103 (144)
2 d1mxia_ c.116.1.1 (A:) Hypothe 26.6 17 0.0012 22.2 2.1 16 16-31 133-148 (156)
3 d1gz0a1 c.116.1.1 (A:78-243) R 25.3 18 0.0013 22.7 2.1 15 16-30 150-164 (166)
4 d1ipaa1 c.116.1.1 (A:106-263) 23.1 21 0.0015 22.0 2.1 15 16-30 141-155 (158)
5 d1v2xa_ c.116.1.1 (A:) tRNA (G 20.4 25 0.0018 22.7 2.1 15 16-30 153-167 (191)
6 d2p3ra2 c.55.1.4 (A:254-500) G 12.5 1.8E+02 0.013 19.1 5.1 30 6-35 182-211 (247)
7 d1wpga4 f.33.1.1 (A:1-124,A:24 12.1 52 0.0038 23.7 2.2 17 6-22 192-208 (472)
8 d2pxrc1 a.73.1.1 (C:1-145) HIV 10.5 31 0.0023 22.8 0.3 15 5-19 32-46 (145)
9 d2gkea2 d.21.1.1 (A:131-274) D 10.1 59 0.0043 20.5 1.6 27 15-41 86-112 (144)
10 d2pw6a1 c.56.6.1 (A:14-271) Un 9.6 41 0.003 23.2 0.7 11 9-19 222-232 (258)
No 1
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=28.48 E-value=21 Score=23.51 Aligned_cols=22 Identities=9% Similarity=0.146 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhhhhhhccCC
Q 048115 14 AAMTFVASMCVFQLTRNVLLNP 35 (94)
Q Consensus 14 ~avgvAvg~~~~~~~R~l~~nP 35 (94)
+.++++++++.|...|..+.+|
T Consensus 82 ~~~~i~~s~~i~~~~r~~v~p~ 103 (144)
T d1v54d_ 82 AMFFIGFTALLLIWEKHYVYGP 103 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 4567788888888889777664
No 2
>d1mxia_ c.116.1.1 (A:) Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue) {Haemophilus influenzae [TaxId: 727]}
Probab=26.59 E-value=17 Score=22.20 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhhhhhh
Q 048115 16 MTFVASMCVFQLTRNV 31 (94)
Q Consensus 16 vgvAvg~~~~~~~R~l 31 (94)
+++|++++.|...|++
T Consensus 133 vs~A~aI~lyE~~RQ~ 148 (156)
T d1mxia_ 133 LSNSVAVTVYEAWRQL 148 (156)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6788899999988865
No 3
>d1gz0a1 c.116.1.1 (A:78-243) RlmB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=25.34 E-value=18 Score=22.66 Aligned_cols=15 Identities=20% Similarity=0.733 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhhhh
Q 048115 16 MTFVASMCVFQLTRN 30 (94)
Q Consensus 16 vgvAvg~~~~~~~R~ 30 (94)
|++|++++.|...|+
T Consensus 150 vs~A~~I~lye~~rq 164 (166)
T d1gz0a1 150 VSVATGICLFEAVRQ 164 (166)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 688999999998885
No 4
>d1ipaa1 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=23.12 E-value=21 Score=22.05 Aligned_cols=15 Identities=13% Similarity=0.412 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhhhh
Q 048115 16 MTFVASMCVFQLTRN 30 (94)
Q Consensus 16 vgvAvg~~~~~~~R~ 30 (94)
+++|++++.|...|+
T Consensus 141 vs~A~aI~lyE~~RQ 155 (158)
T d1ipaa1 141 VSVSAALLLYEALRQ 155 (158)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 678999999998874
No 5
>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus thermophilus [TaxId: 274]}
Probab=20.38 E-value=25 Score=22.71 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhhhhh
Q 048115 16 MTFVASMCVFQLTRN 30 (94)
Q Consensus 16 vgvAvg~~~~~~~R~ 30 (94)
|++|+|++.|...|+
T Consensus 153 vsvAa~I~lyE~~rq 167 (191)
T d1v2xa_ 153 VSVAAAVILFEAQRQ 167 (191)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 688999999999884
No 6
>d2p3ra2 c.55.1.4 (A:254-500) Glycerol kinase {Escherichia coli [TaxId: 562]}
Probab=12.53 E-value=1.8e+02 Score=19.09 Aligned_cols=30 Identities=20% Similarity=0.018 Sum_probs=22.3
Q ss_pred CcchhhHHHHHHHHHHHHHHhhhhhhccCC
Q 048115 6 RPEVYPLMAAMTFVASMCVFQLTRNVLLNP 35 (94)
Q Consensus 6 ~pEvyPL~~avgvAvg~~~~~~~R~l~~nP 35 (94)
.+|..-+.+|+..|++++.|.....+....
T Consensus 182 ~~e~~a~GaA~~aa~~~G~~~~~~e~~~~~ 211 (247)
T d2p3ra2 182 VREVTALGAAYLAGLAVGFWQNLDELQEKA 211 (247)
T ss_dssp CCCHHHHHHHHHHHHHHTSSSCGGGGTTCC
T ss_pred cccccHHHHHHHHHHHcCCCCCHHHHHhcC
Confidence 357788999999999988887666554443
No 7
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=12.10 E-value=52 Score=23.72 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=12.0
Q ss_pred CcchhhHHHHHHHHHHH
Q 048115 6 RPEVYPLMAAMTFVASM 22 (94)
Q Consensus 6 ~pEvyPL~~avgvAvg~ 22 (94)
=||-+|+.+.+..|.|+
T Consensus 192 iPEgLp~~vti~La~~~ 208 (472)
T d1wpga4 192 IPEGLPAVITTCLALGT 208 (472)
T ss_dssp SCTTHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHH
Confidence 37888888777665553
No 8
>d2pxrc1 a.73.1.1 (C:1-145) HIV-1 capsid protein {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=10.46 E-value=31 Score=22.81 Aligned_cols=15 Identities=33% Similarity=0.620 Sum_probs=12.2
Q ss_pred cCcchhhHHHHHHHH
Q 048115 5 MRPEVYPLMAAMTFV 19 (94)
Q Consensus 5 i~pEvyPL~~avgvA 19 (94)
..||++|+|.|++..
T Consensus 32 f~pEvipmF~ALSeg 46 (145)
T d2pxrc1 32 FSPEVIPMFSALSEG 46 (145)
T ss_dssp TSTTHHHHHHHTCTT
T ss_pred CCHHHHHHHHHHhCC
Confidence 469999999988654
No 9
>d2gkea2 d.21.1.1 (A:131-274) Diaminopimelate epimerase {Haemophilus influenzae [TaxId: 727]}
Probab=10.08 E-value=59 Score=20.51 Aligned_cols=27 Identities=26% Similarity=0.102 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhhhhhccCCceeeec
Q 048115 15 AMTFVASMCVFQLTRNVLLNPDVRINK 41 (94)
Q Consensus 15 avgvAvg~~~~~~~R~l~~nP~vRv~K 41 (94)
++|.+.+++++...+.-..+.++.+.-
T Consensus 86 aCGTGA~Aaa~~~~~~~~~~~~i~V~~ 112 (144)
T d2gkea2 86 ACGSGACAAVAVGIMQGLLNNNVQVDL 112 (144)
T ss_dssp CCHHHHHHHHHHHHHTTSSCSEEEEEE
T ss_pred ccchhhHHHHHHHHHcCCCCCcEEEEE
Confidence 567766666666665555566666643
No 10
>d2pw6a1 c.56.6.1 (A:14-271) Uncharacterized protein YgiD {Escherichia coli [TaxId: 562]}
Probab=9.60 E-value=41 Score=23.23 Aligned_cols=11 Identities=18% Similarity=0.244 Sum_probs=9.6
Q ss_pred hhhHHHHHHHH
Q 048115 9 VYPLMAAMTFV 19 (94)
Q Consensus 9 vyPL~~avgvA 19 (94)
++||++|+|+|
T Consensus 222 ~~Pl~~alGa~ 232 (258)
T d2pw6a1 222 YLPLLYVLGAW 232 (258)
T ss_dssp THHHHHHHHTC
T ss_pred HHHHHHHhhCC
Confidence 68999999975
Done!