BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048117
(352 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust.
Identities = 276/351 (78%), Positives = 315/351 (89%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VHEYS +SGF+RN+ VCNTLIDMYVKCGCLE ARRVF EMEERTV +WSAMI GLA+HGQ
Sbjct: 164 VHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQ 223
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+EAL F++MI++G+KPNGVTFIGLLHAC HMG +DEGRRFF SMT +YG+IPQIEHYG
Sbjct: 224 AEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYG 283
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDL SRAG L+EA+EFI +MPIKPNGVVWGALLGGC+VHKNIDLAEEA + L +LDPL
Sbjct: 284 CVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPL 343
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+GY+VV+SNIYAEAERWED ARVRKLM++ GVKKT GWSSITV+GVVHEFVAGD+THPQ
Sbjct: 344 NDGYYVVISNIYAEAERWEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQ 403
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
AE I ++W+KLL MK +GY P TSVVLLD+EEKEKEKFLYRHSEKLA+ FGLM TP GT
Sbjct: 404 AEDICKIWDKLLVKMKRRGYAPKTSVVLLDMEEKEKEKFLYRHSEKLAVVFGLMTTPEGT 463
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRIMKNLRVCEDCHAA K+IS IV+REI+VRDRNRFHCF+ G CSC D+W
Sbjct: 464 PIRIMKNLRVCEDCHAALKIISGIVSREIIVRDRNRFHCFRDGQCSCRDFW 514
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 5/160 (3%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+R+ N +I K G ++GA F+ M + V +W++MI G G+ EA+ F K
Sbjct: 73 QRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMK 132
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
+ + ++PN VT + +L AC +G +D G R + +T+ G + ++D+ + G
Sbjct: 133 LEDEAVRPNEVTVVSVLAACADLGDLDLG-RIVHEYSTKSGFKRNVHVCNTLIDMYVKCG 191
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
L+ A M + V W A++ G +H AEEA
Sbjct: 192 CLENARRVFYEME-ERTVVSWSAMIAGLAMHGQ---AEEA 227
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 271/352 (76%), Positives = 310/352 (88%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H++SN+SG+ +NIRVCNTLIDMYVKCGCLE A R+F MEERTV +WSAMI GLA HG
Sbjct: 266 RIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHG 325
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A++AL FNKMI G+KPN VTFIG+LHAC HMG V++GR++F SMT +YGI+P+IEHY
Sbjct: 326 RAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHY 385
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDL SRAG LQEA+EFI NMPI PNGVVWGALLGGC+VHKNI LAEEA+R L +LDP
Sbjct: 386 GCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKLDP 445
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
LN+GY+VVLSNIYAEA RWEDVARVRKLMR+ GVKKTPGWSSI V+GVV+ FVAGD+THP
Sbjct: 446 LNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTHP 505
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q E+IFQ WEKLL MKLKGY+PNTSVVLLD+EE +KEKFLYRHSEKLA+ FGL+ T PG
Sbjct: 506 QTEEIFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTPG 565
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IRIMKNLRVCEDCHAA K+IS + REIVVRDRNRFHCF+ GSCSCGDYW
Sbjct: 566 TVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 617
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 2/151 (1%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+R++ N +I VK G EGA ++F EM ER V +W++MI G A G++KEA+ F +
Sbjct: 176 QRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLE 235
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M + G+ PN VT + +L AC MG + GRR + + G I ++D+ + G
Sbjct: 236 MEDAGLLPNEVTVVAVLVACADMGNLVLGRR-IHDFSNRSGYEKNIRVCNTLIDMYVKCG 294
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
L++A NM + V W A++ G H
Sbjct: 295 CLEDACRIFDNME-ERTVVSWSAMIAGLAAH 324
>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
Length = 599
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 272/352 (77%), Positives = 309/352 (87%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+HEYSN+ GF+RN+R+ NTLIDMYVKCGCLE A +VF EMEERTV +WSAMI GLA+HG
Sbjct: 248 RIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHG 307
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+EAL F+ M ++GI+PNGVTFIGLLHAC HMG + EGRRFF SMT +YGIIPQIEHY
Sbjct: 308 RAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHY 367
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLLSRAG L EA+EFI NMP+KPNGVVWGALLG CRVHKN+++AEEA + L +LDP
Sbjct: 368 GCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDP 427
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
LN+GY+VVLSNIYAEA RWED ARVRK M++ VKKTPGWSSITVDGVVHEFVAG+E+HP
Sbjct: 428 LNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHP 487
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
E+IFQ WE+LL+ M+LKGY+PNTSVVLLDIEE EK KF+ RHSEKLAL FGLMNTP
Sbjct: 488 DTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAE 547
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPIRIMKNLR+CEDCH+AFKLIS IVNREIVVRDRNRFHCF SCSC DYW
Sbjct: 548 TPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 599
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
+R C L+D L R + +E+ +W++MI G G+AKEA+ F KM E
Sbjct: 168 LRACLNLLD-------LSNGRILHGVVEKVGFRSWTSMIAGYVQCGKAKEAIHLFAKMEE 220
Query: 75 IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ 134
G+K N VT + +L AC +G +D G R + + +G + ++D+ + G L+
Sbjct: 221 AGVKCNEVTVVAVLAACADLGALDLGMR-IHEYSNRHGFKRNVRISNTLIDMYVKCGCLE 279
Query: 135 EAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
EA + M + V W A++GG +H AEEA R +
Sbjct: 280 EACKVFEEMEER-TVVSWSAMIGGLAMHGR---AEEALRLFSDMS 320
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust.
Identities = 272/352 (77%), Positives = 309/352 (87%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+HEYSN+ GF+RN+R+ NTLIDMYVKCGCLE A +VF EMEERTV +WSAMI GLA+HG
Sbjct: 281 RIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHG 340
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+EAL F+ M ++GI+PNGVTFIGLLHAC HMG + EGRRFF SMT +YGIIPQIEHY
Sbjct: 341 RAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHY 400
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLLSRAG L EA+EFI NMP+KPNGVVWGALLG CRVHKN+++AEEA + L +LDP
Sbjct: 401 GCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDP 460
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
LN+GY+VVLSNIYAEA RWED ARVRK M++ VKKTPGWSSITVDGVVHEFVAG+E+HP
Sbjct: 461 LNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHP 520
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
E+IFQ WE+LL+ M+LKGY+PNTSVVLLDIEE EK KF+ RHSEKLAL FGLMNTP
Sbjct: 521 DTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAE 580
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPIRIMKNLR+CEDCH+AFKLIS IVNREIVVRDRNRFHCF SCSC DYW
Sbjct: 581 TPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 632
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 87/168 (51%), Gaps = 5/168 (2%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+R++ N +I +K G EGA +F M ER V +W++MI G G+AKEA+ F K
Sbjct: 191 QRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAK 250
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M E G+K N VT + +L AC +G +D G R + + +G + ++D+ + G
Sbjct: 251 MEEAGVKCNEVTVVAVLAACADLGALDLGMR-IHEYSNRHGFKRNVRISNTLIDMYVKCG 309
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
L+EA + M + V W A++GG +H AEEA R +
Sbjct: 310 CLEEACKVFEEMEER-TVVSWSAMIGGLAMHGR---AEEALRLFSDMS 353
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust.
Identities = 244/321 (76%), Positives = 283/321 (88%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+HEYSN+ GF+RN+R+ NTLIDMYVKCGCLE A +VF EMEERTV +WSAMI GLA+HG
Sbjct: 281 RIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHG 340
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+EAL F+ M ++GI+PNGVTFIGLLHAC HMG + EGRRFF SMT +YGIIPQIEHY
Sbjct: 341 RAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHY 400
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLLSRAG L EA+EFI NMP+KPNGVVWGALLG CRVHKN+++AEEA + L +LDP
Sbjct: 401 GCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDP 460
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
LN+GY+VVLSNIYAEA RWED ARVRK M++ VKKTPGWSSITVDGVVHEFVAG+E+HP
Sbjct: 461 LNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHP 520
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
E+IFQ WE+LL+ M+LKGY+PNTSVVLLDIEE EK KF+ RHSEKLAL FGLMNTP
Sbjct: 521 DTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAE 580
Query: 301 TPIRIMKNLRVCEDCHAAFKL 321
TPIRIMKNLR+CEDCH+AF++
Sbjct: 581 TPIRIMKNLRICEDCHSAFQI 601
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 87/168 (51%), Gaps = 5/168 (2%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+R++ N +I +K G EGA +F M ER V +W++MI G G+AKEA+ F K
Sbjct: 191 QRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAK 250
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M E G+K N VT + +L AC +G +D G R + + +G + ++D+ + G
Sbjct: 251 MEEAGVKCNEVTVVAVLAACADLGALDLGMR-IHEYSNRHGFKRNVRISNTLIDMYVKCG 309
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
L+EA + M + V W A++GG +H AEEA R +
Sbjct: 310 CLEEACKVFEEMEER-TVVSWSAMIGGLAMHGR---AEEALRLFSDMS 353
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 243/352 (69%), Positives = 279/352 (79%), Gaps = 34/352 (9%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H++SN+SG+ +NIRVCNTLIDMYVKCGCLE A R+F MEERTV +WSAMI GLA HG
Sbjct: 266 RIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHG 325
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A++AL FNKMI G+KPN VTFIG+LHAC HMG V++GR++F SMT +YGI+P+IEHY
Sbjct: 326 RAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHY 385
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDL SRAG LQEA+EFI NMPI PNGVVWGALLGGC+VHKN+ LAEEA+R L +LDP
Sbjct: 386 GCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLAEEATRHLSKLDP 445
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
LN+GY+VVLSNIYAEA RWEDVARVRKLMR+ G
Sbjct: 446 LNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGT-------------------------- 479
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
WEKLL MKLKGY+PNTSVVLLD+EE +KEKFLYRHSEKLA+ FGL+ T PG
Sbjct: 480 --------WEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTPG 531
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IRIMKNLRVCEDCHAA K+IS + REIVVRDRNRFHCF+ GSCSCGDYW
Sbjct: 532 TVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 583
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 2/151 (1%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+R++ N +I VK G EGA ++F EM ER V +W++MI G A G++KEA+ F +
Sbjct: 176 QRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLE 235
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M + G+ PN VT + +L AC MG + GRR + + G I ++D+ + G
Sbjct: 236 MEDAGLLPNEVTVVAVLVACADMGNLVLGRR-IHDFSNRSGYEKNIRVCNTLIDMYVKCG 294
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
L++A NM + V W A++ G H
Sbjct: 295 CLEDACRIFDNME-ERTVVSWSAMIAGLAAH 324
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust.
Identities = 194/351 (55%), Positives = 252/351 (71%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y ++ + + L+DMY KCG + A R+FIE R + W+A+I G A+HG
Sbjct: 381 VHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGY 440
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL F +M G+KPN +TFIGLLHAC H G V EG++ F M +G++PQIEHYG
Sbjct: 441 GEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYG 500
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L EA+E I++MPIKPN +VWGAL+ CR+HKN L E A+ QL +++P
Sbjct: 501 CMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPE 560
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+V++SNIYA A RW D A VRK M+ +G+KK PG S I V+G VHEF+ GD++HPQ
Sbjct: 561 NCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQ 620
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I +M ++ + GY+P+TS VLL+I+E+EKE L HSEKLA+ FGL++T P T
Sbjct: 621 IRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPST 680
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVC DCHAA KL+S+I R I+VRDRNRFH F+ G CSCGDYW
Sbjct: 681 PIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 731
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 99/220 (45%), Gaps = 11/220 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G R++ V N L+ MY +C C+E AR VF +M ER V +WS MI+ L+ + +
Sbjct: 146 IHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKE 205
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF----FYSMTTEYGIIPQI 117
AL +M + ++P+ V + +++ + G+ + E+ +P
Sbjct: 206 FDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTT 265
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
++D+ ++ G L A + + K V W A++ GC + EEA D
Sbjct: 266 T---ALLDMYAKCGHLGLARQLFNGLTQK-TVVSWTAMIAGCIRSNRL---EEARALFDS 318
Query: 178 LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKT 217
+ + + YA+A + + MR GV+ T
Sbjct: 319 TQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPT 358
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 84/211 (39%), Gaps = 41/211 (19%)
Query: 2 VHEY--SNQSGFRRNIRVCNTLIDMYVKCG--------------------------C--- 30
+H Y N + + L+DMY KCG C
Sbjct: 247 MHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRS 306
Query: 31 --LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88
LE AR +F + R V W+AM+ A +A F++M G++P VT + LL
Sbjct: 307 NRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLL 366
Query: 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE-FIRNMPIKP 147
C G +D G+ + E + I + +VD+ ++ G + A FI I
Sbjct: 367 SLCAVAGALDLGKWVHSYIDKERVEVDCILNTA-LVDMYAKCGDINAAGRLFIE--AISR 423
Query: 148 NGVVWGALLGGCRVH----KNIDLAEEASRQ 174
+ +W A++ G +H + +D+ E RQ
Sbjct: 424 DICMWNAIITGFAMHGYGEEALDIFAEMERQ 454
>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
Length = 771
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 194/351 (55%), Positives = 252/351 (71%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y ++ + + L+DMY KCG + A R+FIE R + W+A+I G A+HG
Sbjct: 421 VHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGY 480
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL F +M G+KPN +TFIGLLHAC H G V EG++ F M +G++PQIEHYG
Sbjct: 481 GEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYG 540
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L EA+E I++MPIKPN +VWGAL+ CR+HKN L E A+ QL +++P
Sbjct: 541 CMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPE 600
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+V++SNIYA A RW D A VRK M+ +G+KK PG S I V+G VHEF+ GD++HPQ
Sbjct: 601 NCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQ 660
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I +M ++ + GY+P+TS VLL+I+E+EKE L HSEKLA+ FGL++T P T
Sbjct: 661 IRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPST 720
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVC DCHAA KL+S+I R I+VRDRNRFH F+ G CSCGDYW
Sbjct: 721 PIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 771
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 8/179 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y ++GF ++ + L+DMY KC + AR +F + R V W+AM+ A
Sbjct: 319 QLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQAN 378
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A F++M G++P VT + LL C G +D G+ + E + I +
Sbjct: 379 CIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNT 438
Query: 121 GCMVDLLSRAGFLQEAYE-FIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASRQ 174
+VD+ ++ G + A FI I + +W A++ G +H + +D+ E RQ
Sbjct: 439 A-LVDMYAKCGDINAAGRLFIE--AISRDICMWNAIITGFAMHGYGEEALDIFAEMERQ 494
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 8/162 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G R++ V N L+ MY +C C+E AR VF +M ER V +WS MI+ L+ + +
Sbjct: 116 IHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKE 175
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF----FYSMTTEYGIIPQI 117
AL +M + ++P+ V + +++ + G+ + E+ +P
Sbjct: 176 FDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTT 235
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
++D+ ++ G L A + + K V W A++ GC
Sbjct: 236 T---ALLDMYAKCGHLGLARQLFNGLTQK-TVVSWTAMIAGC 273
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 35/211 (16%)
Query: 2 VHEY--SNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
+H Y N + + L+DMY KCG L AR++F + ++TV +W+AMI G
Sbjct: 217 MHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRS 276
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF--------------- 104
+ +E F +M E I PN +T + L+ CG G + G++
Sbjct: 277 NRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALA 336
Query: 105 YSMTTEYGIIPQIEH---------------YGCMVDLLSRAGFLQEAYEF---IRNMPIK 146
++ YG I + + M+ ++A + +A+ +R ++
Sbjct: 337 TALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVR 396
Query: 147 PNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
P V +LL C V +DL + +D+
Sbjct: 397 PTKVTIVSLLSLCAVAGALDLGKWVHSYIDK 427
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 188/352 (53%), Positives = 253/352 (71%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y+ +SGF N+ V L+D+Y KCG + A+++F M E+ V +W+ MI IHG
Sbjct: 444 QIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHG 503
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++AL F+KM E G K + + F +L AC H G VD+G ++F M ++YG+ P++EHY
Sbjct: 504 HGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHY 563
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL RAG L EA I+NM ++P+ VWGALLG CR+H NI+L E+A++ L +LDP
Sbjct: 564 ACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDP 623
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N GY+V+LSNIYAEA+RWEDVA++RK+M+ GVKK PG S + V V F+ GD THP
Sbjct: 624 DNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHP 683
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q+E+I+ M E L + M+ GY+PNT++ L D+EE+ KE L HSEKLA++FG++NT PG
Sbjct: 684 QSEQIYAMLEILYEQMRKAGYVPNTNLALQDVEEEAKENILSSHSEKLAISFGIINTSPG 743
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRIMKNLRVC DCH A K IS+IV REI+VRD NRFH + G CSCGDYW
Sbjct: 744 IPIRIMKNLRVCSDCHNATKFISKIVGREIIVRDANRFHHVKNGFCSCGDYW 795
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 90/162 (55%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y+ +SG ++ V N L++MY KCG + A ++F M R V +W+A+I G +++
Sbjct: 242 QIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNS 301
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q EAL FN+M GIKPN +T + +L AC H+ +++G++ + G
Sbjct: 302 QHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQ-IHGYAIRSGFESNDVVG 360
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+V++ ++ G + AY+ MP K N V W A++ G H
Sbjct: 361 NALVNMYAKCGNVNSAYKLFERMP-KKNVVAWNAIISGYSQH 401
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 88/158 (55%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VHE GF ++ V L MY KCG LE AR+VF M +R V +W+A+I G + +G
Sbjct: 141 KVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNG 200
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q EAL F++M GIKPN T + ++ C H+ +++G++ + GI +
Sbjct: 201 QPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQ-IHCYAIRSGIESDVLVV 259
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V++ ++ G + A++ MPI+ + W A++GG
Sbjct: 260 NGLVNMYAKCGNVNTAHKLFERMPIR-DVASWNAIIGG 296
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 85/162 (52%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y+ +SGF N V N L++MY KCG + A ++F M ++ V W+A+I G + HG
Sbjct: 343 QIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHG 402
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL F +M GIKP+ + +L AC H +++G++ + T G +
Sbjct: 403 HPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQ-IHGYTIRSGFESNVVVG 461
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ ++ G + A + MP + + V W ++ +H
Sbjct: 462 TGLVDIYAKCGNVNTAQKLFERMP-EQDVVSWTTMILAYGIH 502
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Query: 48 TWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM 107
W I G +G +AL + +M GI P+ + F+ ++ ACG + GR+ +
Sbjct: 87 VWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDI 146
Query: 108 TTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
G + + + ++ G L+ A + MP K + V W A++ G
Sbjct: 147 IAR-GFESDVIVGTALASMYTKCGSLENARQVFDRMP-KRDVVSWNAIIAG 195
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 187/352 (53%), Positives = 259/352 (73%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH Y + G +N V N+L+D+Y KCG + A+RVF EM ER +W+++I GLA++G
Sbjct: 240 RVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNG 299
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F +M G+ P+ +TF+G+L+AC H G +DEG +F M E GIIP+IEHY
Sbjct: 300 FGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHY 359
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLLSRAG +++AYE+I+NMP++PN V+W LLG C +H ++ L E A L L+P
Sbjct: 360 GCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEP 419
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++G +V+LSN+YA RW DV +R+ M GVKKTPG+S + + V+EF GD +HP
Sbjct: 420 KHSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHP 479
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q++ ++ + EK+ + +KL+GY+P+T+ VL DIEE+EKE+ L HSEK+A+ F L+NTPPG
Sbjct: 480 QSQDVYALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKVAIAFMLLNTPPG 539
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPIR+MKNLRVC DCH A KLI++I +REIV+RDR+RFH F+ GSCSC DYW
Sbjct: 540 TPIRVMKNLRVCADCHMAIKLIAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 89/161 (55%), Gaps = 2/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + ++GF + V N+L+ +Y CG E A +VF M+ER + W++MI G A++G+
Sbjct: 140 IHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGR 199
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EALT F +M G++P+G T + LL A +G ++ GRR + + G+
Sbjct: 200 PNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYL-LKVGLSKNSHVTN 258
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++DL ++ G ++EA M + N V W +L+ G V+
Sbjct: 259 SLLDLYAKCGAIREAQRVFSEMSER-NAVSWTSLIVGLAVN 298
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 98/234 (41%), Gaps = 10/234 (4%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH 93
A VF + VFTW+ +I+G A A + +M+ ++P+ T+ LL A
Sbjct: 71 AYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISK 130
Query: 94 MGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWG 153
V EG +S+T G + ++ + + G + AY+ M + + V W
Sbjct: 131 SLNVREGEA-IHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKER-DLVAWN 188
Query: 154 ALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVV-LSNIYAEAERWEDVARVRKLMRNL 212
+++ G ++ + A R++ +G+ VV L + AE E RV + +
Sbjct: 189 SMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKV 248
Query: 213 GVKKTPGWSSITVD-----GVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGY 261
G+ K ++ +D G + E A +E+ W L+ G+ + G+
Sbjct: 249 GLSKNSHVTNSLLDLYAKCGAIRE--AQRVFSEMSERNAVSWTSLIVGLAVNGF 300
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/351 (54%), Positives = 255/351 (72%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+HE ++ ++++ +L+DMY KCG ++ + RVF M R VF WSAMI GLA HG
Sbjct: 290 IHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGF 349
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ AL F+KMI IKPN VTFIG+L AC H+G VDEG +F SM+ Y + P+IEHYG
Sbjct: 350 GELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYG 409
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VD+L RAG LQEA E I++MP P+ +VW ALLG CR++KN+++AEEA+ L +L+P
Sbjct: 410 CVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPH 469
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+G +V+LSNIY++A+ W+ V VR++M+N+ ++K PG SSI VD VHEFVAGD++HP+
Sbjct: 470 VDGNYVLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPE 529
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++KI +M ++ +K GY P T+ VL D +EKEKE L HSEKLA+ FGL++T PG+
Sbjct: 530 SKKILRMLSEITARLKANGYAPLTASVLQDFDEKEKENALAHHSEKLAIAFGLLSTAPGS 589
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC+DCH A KLIS R I+VRDRNRFH F GSCSC DYW
Sbjct: 590 TIRIVKNLRVCDDCHIAIKLISRTYKRRIIVRDRNRFHHFVNGSCSCKDYW 640
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 2/150 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ NT+I + G + A+++F ER + +WS+MI A Q+ EAL F++M
Sbjct: 200 RDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEM 259
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ P+ VT + +L ACG +G + G + + I ++ +VD+ ++ G
Sbjct: 260 QLANVLPDKVTMVSVLSACGDVGALGMG-KMIHECIERNRIEIDLKLGTSLVDMYAKCGD 318
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ + M + + W A++ G H
Sbjct: 319 IDNSLRVFNGMNNR-DVFAWSAMIMGLANH 347
>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
Length = 370
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/352 (55%), Positives = 250/352 (71%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + GF ++ V N L+DMY KCG +E A+ VF ++ E V +W+AMI GLA HG
Sbjct: 19 QVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDVASWNAMISGLAQHG 78
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
KEA+ F +M++ G+KPN +TF+ +L C H G VDEGR +F SMT ++GI P+ EHY
Sbjct: 79 CGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHY 138
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDL RAG L EA FI MP++PN VWG+LLG CRVH NI+LAE A QL +L P
Sbjct: 139 SCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIELAERAVEQLIELTP 198
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +V+LSNIYA A RW+D +VRK+M++ VKK PG S I V VH F+ GD +HP
Sbjct: 199 ENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWIEVQNKVHPFIVGDSSHP 258
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q E+I++ E L MK GYIPNT+ VL D+EE++KE L HSEKLA+ FG+++TPPG
Sbjct: 259 QIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILGHHSEKLAIAFGIISTPPG 318
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IR++KNLRVC DCH A K IS IV+REIV+RD +RFH F+ G CSCGDYW
Sbjct: 319 TTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFKDGQCSCGDYW 370
>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
Length = 663
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 192/336 (57%), Positives = 247/336 (73%), Gaps = 1/336 (0%)
Query: 17 VCNT-LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEI 75
+ NT L+DMY KCG + A R+FIE R + W+A+I G A+HG +EAL F +M
Sbjct: 309 ILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQ 368
Query: 76 GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE 135
G+KPN +TFIGLLHAC H G V EG++ F M +G++PQIEHYGCMVDLL RAG L E
Sbjct: 369 GVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDE 428
Query: 136 AYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAE 195
A+E I++MPIKPN +VWGAL+ CR+HKN L E A+ QL +++P N GY+V++SNIYA
Sbjct: 429 AHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAA 488
Query: 196 AERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDG 255
A RW D A VRK M+ +G+KK PG S I V+G VHEF+ GD++HPQ +I +M ++
Sbjct: 489 ANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRK 548
Query: 256 MKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDC 315
+ GY+P+TS VLL+I+E+EKE L HSEKLA+ FGL++T P TPIRI+KNLRVC DC
Sbjct: 549 LNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDC 608
Query: 316 HAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDY 351
HAA KL+S+I R I+VRDRNRFH F+ G CSCGDY
Sbjct: 609 HAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDY 644
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 86/194 (44%), Gaps = 27/194 (13%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTW----SAMIQGLA 57
+H + + G R++ V N L+ MY +C C+E AR VF +M ER V +W +A++ A
Sbjct: 181 IHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYA 240
Query: 58 IHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
G A FN + + + V++ ++ C ++EG + F M E +I
Sbjct: 241 KCGHLGLARQLFNGLTQKTV----VSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEI 296
Query: 118 EHYG------------CMVDLLSRAGFLQEAYE-FIRNMPIKPNGVVWGALLGGCRVH-- 162
+VD+ ++ G + A FI I + +W A++ G +H
Sbjct: 297 TMLNKERVEVDCILNTALVDMYAKCGDINAAGRLFIE--AISRDICMWNAIITGFAMHGY 354
Query: 163 --KNIDLAEEASRQ 174
+ +D+ E RQ
Sbjct: 355 GEEALDIFAEMERQ 368
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 184/350 (52%), Positives = 252/350 (72%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H Y ++ G ++ + LIDMY KCG + GA+R+F E +R + TW+ M+ G +HG
Sbjct: 356 HAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYG 415
Query: 63 KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC 122
++AL F +M +G+KPN +TFIG LHAC H G V EG+ F M ++G++P++EHYGC
Sbjct: 416 EKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGC 475
Query: 123 MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182
MVDLL RAG L EAY+ I +MP+ PN +WGA+L C++HKN ++ E A+R+L L+P N
Sbjct: 476 MVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELAARELLALEPQN 535
Query: 183 NGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQA 242
GY V++SNIYA A RW DVA +RK +++ G+KK PG SSI V+G+VH+F GD HP
Sbjct: 536 CGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNGLVHDFKMGDTAHPLI 595
Query: 243 EKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTP 302
EKI +M ++ +K GY+P+TSVVL +I+E+EKE L HSEKLA+ FGL++T PGTP
Sbjct: 596 EKISEMLAEMSKKLKEAGYLPDTSVVLHNIDEEEKETALNYHSEKLAMAFGLISTAPGTP 655
Query: 303 IRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR++KNLR+C+DCH KL+S+I R I+VRDRNRFH F+ GSCSCG YW
Sbjct: 656 IRVVKNLRICDDCHTVTKLLSKIYKRVIIVRDRNRFHHFREGSCSCGGYW 705
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 81/162 (50%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H Y ++GF ++ + L+DMY KCG + AR +F M+ + V TW+AMI A
Sbjct: 253 RLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQAN 312
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A F +M + G++PN +T + LL C G +D G ++F++ + G+ +
Sbjct: 313 CIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMG-KWFHAYIDKQGVEVDVILK 371
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++ G + A I + W ++ G +H
Sbjct: 372 TALIDMYAKCGDISGAQRLFSE-AIDRDICTWNVMMAGYGMH 412
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 93/197 (47%), Gaps = 26/197 (13%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQG--LAIH 59
+H +S ++G ++ V N L+ MY +CG L AR +F +M ER V +WS MI+ +
Sbjct: 131 IHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFY 190
Query: 60 GQAKEALTS--------------------FNKMIEIGIKPNGVTFIGLLHACGHMGWVDE 99
G ++ ++ S F +MIE + PN +T + L+ +CG +G V
Sbjct: 191 GFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQL 250
Query: 100 GRRFF-YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
G+R Y + +G+ + +VD+ + G ++ A +M K + + W A++
Sbjct: 251 GKRLHAYILRNGFGM--SLALATALVDMYGKCGEIRSARAIFDSMKNK-DVMTWTAMISA 307
Query: 159 CRVHKNIDLAEEASRQL 175
ID A + Q+
Sbjct: 308 YAQANCIDYAFQLFVQM 324
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 185/351 (52%), Positives = 250/351 (71%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + + + + L+D Y KCG +E + VF +M + V +W+ +IQGLA +GQ
Sbjct: 348 VHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQ 407
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K+AL F M+E ++PN VTFIG+L AC H G VDEGR F SM+ ++GI P+IEHYG
Sbjct: 408 GKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYG 467
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+L RAG ++EA++FI+NMPI+PN V+W LL C+VHKN+++ EE+ +QL L+P
Sbjct: 468 CMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPT 527
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +++LSNIYA RWED +VR M+ G+KKTPG S I +DGV+HEF A D H Q
Sbjct: 528 HSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQ 587
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+E+I+ E ++ +K GY+PNT+ LD EE +KE + HSEKLA+ FGL+ +PPGT
Sbjct: 588 SEEIYNAIEDMMKQIKSAGYVPNTAEARLDAEEDDKESSVSHHSEKLAIAFGLIKSPPGT 647
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI KNLRVC DCH A KL+S++ NREIVVRDR RFH F+ GSCSC DYW
Sbjct: 648 TIRITKNLRVCTDCHNATKLVSKVFNREIVVRDRTRFHHFKEGSCSCNDYW 698
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 87/164 (53%), Gaps = 16/164 (9%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
++ Y + G + N + +L+DMY KCG ++ ARR+F +M+ R V WSAMI G + +
Sbjct: 247 INRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASR 306
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR--RFF-----YSMTTEYGII 114
+EAL F++M + I PN +T + +L +C +G ++ G+ FF +T G
Sbjct: 307 CREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGT- 365
Query: 115 PQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D ++ G ++ + E MP+K N + W L+ G
Sbjct: 366 -------ALMDFYAKCGSVESSIEVFGKMPVK-NVLSWTVLIQG 401
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 8/184 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + GF + V NTLI MY CG +E ARRVF EM ER V TW++M G G
Sbjct: 145 QIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSG 204
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+E + F++M+E+ I+ + VT + +L ACG + ++ G + E G+
Sbjct: 205 NWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELG-EWINRYVEEKGLKGNPTLI 263
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG----CRVHKNIDLAEEASRQLD 176
+VD+ ++ G + A M + + V W A++ G R + +DL E +
Sbjct: 264 TSLVDMYAKCGQVDTARRLFDQMD-RRDVVAWSAMISGYSQASRCREALDLFHEMQKA-- 320
Query: 177 QLDP 180
+DP
Sbjct: 321 NIDP 324
>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 190/351 (54%), Positives = 254/351 (72%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ + G N+ V ++IDMY KCG +E AR+ F M E+ V +WSAM+ G +HG
Sbjct: 231 IHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGH 290
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AKEAL F +M G+KPN +TF+ +L AC H G ++EG +F +M+ E+ + P +EHYG
Sbjct: 291 AKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYG 350
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG+L+EA++ I+ M ++P+ VVWGALLG CR+HKN+DL E ++R+L +LDP
Sbjct: 351 CMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPK 410
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+V+LSNIYA+A RWEDV R+R LM+N G+ K PG+S + + G VH F+ GD HPQ
Sbjct: 411 NCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQ 470
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
EKI++ EKL ++ GY+P+ + VL D+ +EKE L HSEKLA+ FG+MNT PGT
Sbjct: 471 HEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGT 530
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I I+KNLRVC DCH A K IS+IV+REIVVRD RFH F+ G CSCGDYW
Sbjct: 531 TIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 581
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 93/211 (44%), Gaps = 40/211 (18%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGAR------------------------- 35
+ H+ + GF ++ V + L+DMY KCG L AR
Sbjct: 97 QAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQND 156
Query: 36 ------RVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG-IKPNGVTFIGLL 88
RVF M ER V +W+++I A +G + E++ F++M++ G I N VT +L
Sbjct: 157 DAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVL 216
Query: 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG---FLQEAYEFIRNMPI 145
AC H G G + + + G+ + ++D+ + G ++A++ +R +
Sbjct: 217 LACAHSGSQRLG-KCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNV 275
Query: 146 KPNGVVWGALLGGCRVHKNIDLAEEASRQLD 176
K W A++ G +H + A E +++
Sbjct: 276 KS----WSAMVAGYGMHGHAKEALEVFYEMN 302
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 70/138 (50%), Gaps = 5/138 (3%)
Query: 41 MEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG 100
+++ VF+W+++I LA G + EAL +F+ M ++ +KPN TF + +C + + G
Sbjct: 36 VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSG 95
Query: 101 RRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCR 160
R+ + +G P + +VD+ S+ G L++A + + N V W +++ G
Sbjct: 96 RQ-AHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHR-NIVSWTSMITG-- 151
Query: 161 VHKNIDLAEEASRQLDQL 178
+ D A A R D +
Sbjct: 152 -YVQNDDAHRALRVFDGM 168
>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Vitis vinifera]
Length = 735
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 190/351 (54%), Positives = 254/351 (72%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ + G N+ V ++IDMY KCG +E AR+ F M E+ V +WSAM+ G +HG
Sbjct: 385 IHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGH 444
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AKEAL F +M G+KPN +TF+ +L AC H G ++EG +F +M+ E+ + P +EHYG
Sbjct: 445 AKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYG 504
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG+L+EA++ I+ M ++P+ VVWGALLG CR+HKN+DL E ++R+L +LDP
Sbjct: 505 CMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPK 564
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+V+LSNIYA+A RWEDV R+R LM+N G+ K PG+S + + G VH F+ GD HPQ
Sbjct: 565 NCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQ 624
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
EKI++ EKL ++ GY+P+ + VL D+ +EKE L HSEKLA+ FG+MNT PGT
Sbjct: 625 HEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGT 684
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I I+KNLRVC DCH A K IS+IV+REIVVRD RFH F+ G CSCGDYW
Sbjct: 685 TIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 735
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 93/179 (51%), Gaps = 9/179 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + GF ++ V NTL+D Y KCG L +RRVF M ER V +W+++I A +G
Sbjct: 283 VHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGM 342
Query: 62 AKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ E++ F++M++ G I N VT +L AC H G G + + + G+ +
Sbjct: 343 STESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLG-KCIHDQVIKMGLESNVFVG 401
Query: 121 GCMVDLLSRAG---FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLD 176
++D+ + G ++A++ +R +K W A++ G +H + A E +++
Sbjct: 402 TSIIDMYCKCGKVEMARKAFDRMREKNVKS----WSAMVAGYGMHGHAKEALEVFYEMN 456
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 122/306 (39%), Gaps = 57/306 (18%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H+ + GF ++ V + L+DMY KCG L AR +F E+ R + +W++MI G +
Sbjct: 173 QAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQND 232
Query: 61 QAKEALTSFNKMI--EIGIKPNG------VTFIGLLHACGHMG--WVDEGRRFF------ 104
A AL F + + E G + +G + + +L AC + + EG F
Sbjct: 233 DAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGF 292
Query: 105 -------------YSMTTEYGIIPQIE---------HYGCMVDLLSRAGFLQEAYEFIRN 142
Y+ E G+ ++ + ++ + ++ G E+ E
Sbjct: 293 EGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHR 352
Query: 143 M----PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAER 198
M I N V A+L C + L + Q+ ++ +N + V ++I +
Sbjct: 353 MVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVF--VGTSIIDMYCK 410
Query: 199 WEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKL 258
V RK + K WS++ VAG H A++ +++ + M +
Sbjct: 411 CGKVEMARKAFDRMREKNVKSWSAM---------VAGYGMHGHAKEALEVFYE----MNM 457
Query: 259 KGYIPN 264
G PN
Sbjct: 458 AGVKPN 463
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
Query: 41 MEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG 100
+++ VF+W+++I LA G + EAL +F+ M ++ +KPN TF + +C + + G
Sbjct: 112 VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSG 171
Query: 101 RRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
R+ + +G P + +VD+ S+ G L++A + + N V W +++ G
Sbjct: 172 RQ-AHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHR-NIVSWTSMITG 227
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 182/351 (51%), Positives = 257/351 (73%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+ Y +++ + + V N LIDMY KCG +E A +F + +R FTW+AM+ GLAI+G
Sbjct: 285 IRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGC 344
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL F++M++ + P+ VT++G+L AC H G VDEG++FF SMT +GI P I HYG
Sbjct: 345 GEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYG 404
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL +AG L+EA+E I+NMP+KPN +VWGALLG CR+HK+ ++AE A Q+ +L+P
Sbjct: 405 CMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPN 464
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N +V+ NIYA +W+ + +R++M + G+KKTPG S I ++G+VHEFVAGD++HPQ
Sbjct: 465 NGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQ 524
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I+ K+ +K+ GY PNTS V LDI E++KE +YRHSEKLA+ FGL+N+ PG
Sbjct: 525 TKEIYGKLNKMTSDLKIAGYSPNTSEVFLDIAEEDKENAVYRHSEKLAIAFGLINSGPGV 584
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLR+C DCH KL+S++ +RE++VRDR RFH F+ GSCSC DYW
Sbjct: 585 TIRIVKNLRMCIDCHHVAKLVSKVYDREVIVRDRTRFHHFRHGSCSCKDYW 635
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 79/173 (45%), Gaps = 5/173 (2%)
Query: 6 SNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEA 65
S + ++++ ++ +V G ++ AR+ F +M ER +W+AMI G KEA
Sbjct: 188 SGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEA 247
Query: 66 LTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125
L F +M IKP+ T + +L AC +G ++ G + + + + ++D
Sbjct: 248 LMLFREMQTSKIKPDEFTMVSVLTACAQLGALELG-EWIRTYIDKNKVKNDTFVGNALID 306
Query: 126 LLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ + G ++ A +P + + W A++ G ++ EEA Q+
Sbjct: 307 MYFKCGNVEMALSIFNTLP-QRDKFTWTAMVVGLAIN---GCGEEALNMFSQM 355
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 30/189 (15%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G N+ N LI+MY CG ++ AR +F + V TW+AMI G
Sbjct: 136 LHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISG------ 189
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH-- 119
+N+ IK + +++ ++ + G VD R++F+ M P+ +H
Sbjct: 190 -------YNR-----IKKDVISWTAIVTGFVNTGQVDAARKYFHKM-------PERDHVS 230
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNM---PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLD 176
+ M+D R +EA R M IKP+ ++L C ++L E +D
Sbjct: 231 WTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYID 290
Query: 177 QLDPLNNGY 185
+ N+ +
Sbjct: 291 KNKVKNDTF 299
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 80/173 (46%), Gaps = 15/173 (8%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEG-------ARRVFIEMEERTVFTWSAMI 53
++H + ++G +CN +I + C AR++F + E +VF+W+ M
Sbjct: 32 QIHSRTIKTGI-----ICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMF 86
Query: 54 QGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGI 113
+G + K ++ + +M+E +KP+ T+ L + GR + +YG+
Sbjct: 87 KGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRE-LHCHVVKYGL 145
Query: 114 IPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC-RVHKNI 165
+ + ++++ S G + A I +M K + V W A++ G R+ K++
Sbjct: 146 DSNVFAHNALINMYSLCGLIDMA-RGIFDMSCKSDVVTWNAMISGYNRIKKDV 197
>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Cucumis sativus]
Length = 609
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 185/352 (52%), Positives = 254/352 (72%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH Y + G +N N L+D+Y KCG A++VF EMEER+V +W+++I GLA++G
Sbjct: 258 RVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNG 317
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL F ++ G+KP+ +TF+G+L+AC H G +DEG +F M EYGI+P+IEH+
Sbjct: 318 LGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHH 377
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLL RAG + +AY++IRNMP+ PN V+W LLG C +H +++L E A ++ +L+
Sbjct: 378 GCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQ 437
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++G V+LSN+YA RW DV VRK+M GVKKTPG+S + + V+EF+ GD +HP
Sbjct: 438 RHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHP 497
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q+E+ + M K+ +K++GY+P T VL DIEE+EKE L H+EK+A+ F L+NTPPG
Sbjct: 498 QSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPG 557
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPIRIMKNLRVC DCH A KLIS++ REI+VRDR+RFH F+ GSCSC DYW
Sbjct: 558 TPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 5/178 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++GF V N+L+ MY G L A +VF M R W+++I G A++G
Sbjct: 158 IHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGM 217
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EALT + +M G++P+G T + LL AC +G + G R M + G++
Sbjct: 218 PNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYM-VKVGLVQNQHASN 276
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
++DL S+ G ++A + M + + V W +L+ G V+ L EA + +L+
Sbjct: 277 ALLDLYSKCGNFRDAQKVFDEMEER-SVVSWTSLIVGLAVN---GLGNEALKLFGELE 330
>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 609
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 185/352 (52%), Positives = 254/352 (72%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH Y + G +N N L+D+Y KCG A++VF EMEER+V +W+++I GLA++G
Sbjct: 258 RVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNG 317
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL F ++ G+KP+ +TF+G+L+AC H G +DEG +F M EYGI+P+IEH+
Sbjct: 318 LGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHH 377
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLL RAG + +AY++IRNMP+ PN V+W LLG C +H +++L E A ++ +L+
Sbjct: 378 GCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQ 437
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++G V+LSN+YA RW DV VRK+M GVKKTPG+S + + V+EF+ GD +HP
Sbjct: 438 RHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHP 497
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q+E+ + M K+ +K++GY+P T VL DIEE+EKE L H+EK+A+ F L+NTPPG
Sbjct: 498 QSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPG 557
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPIRIMKNLRVC DCH A KLIS++ REI+VRDR+RFH F+ GSCSC DYW
Sbjct: 558 TPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 5/178 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++GF V N+L+ MY G E A +VF M R W+++I G A++G
Sbjct: 158 IHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGM 217
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EALT + +M G++P+G T + LL AC +G + G R M + G++
Sbjct: 218 PNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYM-VKVGLVQNQHASN 276
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
++DL S+ G ++A + M + + V W +L+ G V+ L EA + +L+
Sbjct: 277 ALLDLYSKCGNFRDAQKVFDEMEER-SVVSWTSLIVGLAVN---GLGNEALKLFGELE 330
Score = 40.8 bits (94), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM-IEIGIKPNGVTFIGLLHACG 92
A ++F +++ +FTW+ MI+G A A+ F++M I P+ TF L A
Sbjct: 88 AAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVA 147
Query: 93 HMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVW 152
+ V G +S+ G +V + S GF + AY+ M + + V W
Sbjct: 148 KLMDVSLGEG-IHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYR-DRVAW 205
Query: 153 GALLGG 158
+++ G
Sbjct: 206 NSVING 211
>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
Length = 496
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/354 (54%), Positives = 251/354 (70%), Gaps = 3/354 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ + G RN+ V +L+DMY KCG +E AR VF M E+ + +W AMIQG A++G
Sbjct: 143 IHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGL 202
Query: 62 AKEALTSFNKMI---EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
KEA+ F +M ++GIKP+G TFIGLL C H G VDEGRR+F SM + + P IE
Sbjct: 203 PKEAIDLFLQMQRENKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIE 262
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
HYGCMVDLL RAG L EA++ IRNMP++ N +VWGALLG CR+H++ LAE A +QL +L
Sbjct: 263 HYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIEL 322
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
+P N+G +V+LSNIY+ +W++ A+VR M ++K PG S I VDG+VHEF+ GD+
Sbjct: 323 EPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKY 382
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
HP +EKI+ ++L MK+ GY+P T VL DIEE+EKE FL HSEKLA+ FGL++
Sbjct: 383 HPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHFLGCHSEKLAIAFGLISAT 442
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P IR++KNLRVC DCH A KLIS I REI VRD NRFHCF+ GSCSC DYW
Sbjct: 443 PTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFREGSCSCNDYW 496
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 81/172 (47%), Gaps = 17/172 (9%)
Query: 19 NTLIDMYVKCGC----LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
N L++M ++C R +F ++++ +F W+ MI+GL + +A+ + M
Sbjct: 46 NYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRS 105
Query: 75 IGIKPNGVTFIGLLHACGHMGWVDEG--------RRFFYSMTTEYGIIPQIEHYGCMVDL 126
G PN TF +L AC + + G + + + E G++ + +VD+
Sbjct: 106 EGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDM 165
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASRQ 174
++ G +++A MP K + V WGA++ G ++ + IDL + R+
Sbjct: 166 YAKCGNMEKARSVFDGMPEK-DIVSWGAMIQGYALNGLPKEAIDLFLQMQRE 216
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 183/351 (52%), Positives = 254/351 (72%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+ Y +++ + ++ V N LIDMY KCG ++ A +F EM +R FTW+AMI GLA++G
Sbjct: 373 IRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGH 432
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL F+ M++ I P+ +T+IG+L AC H G VD+GR++F MT+++GI P I HYG
Sbjct: 433 GEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYG 492
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL+RAG L+EAYE I NMPIK N +VWGALL GCRV++ D+AE +Q+ +L+P
Sbjct: 493 CLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPD 552
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N +V+L NIYA +RW D+ +R++M + G+KKTPG S I ++G VHEFVAGD +HPQ
Sbjct: 553 NGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQ 612
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ I +K+ +KL GY P+ S V LDI E++KE ++RHSEKLA+ FGL+N+PPG
Sbjct: 613 TKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGV 672
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI KNLR+C DCH KL+S++ NRE++VRDR RFH F+ G CSC DYW
Sbjct: 673 TIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 723
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 78/193 (40%), Gaps = 33/193 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGA-------------------------- 34
+VH Y N+ + N +IDMY CG ++ A
Sbjct: 240 KVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLG 299
Query: 35 -----RRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH 89
R F +M E+ +W+AMI G + KEAL F M +KP+ T + +L
Sbjct: 300 EIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLT 359
Query: 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNG 149
AC H+G ++ G + + I + ++D+ + G + +A R M + +
Sbjct: 360 ACAHLGALELG-EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS-QRDK 417
Query: 150 VVWGALLGGCRVH 162
W A++ G V+
Sbjct: 418 FTWTAMIVGLAVN 430
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 93/201 (46%), Gaps = 9/201 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G + N+ V L+ MY+ CG L+ AR VF + V TW+ +I G
Sbjct: 139 QLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVG 198
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +E+ F M + + P VT + +L AC + + G++ +S + +
Sbjct: 199 KFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKK-VHSYVKNCKVESNLVLE 257
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
M+D+ + G + A R+M + + + W ++ G ID+A ++ + D
Sbjct: 258 NAMIDMYADCGEMDSALGIFRSMNNR-DIISWTTIVSGFTNLGEIDVARNYFDKMPEKDY 316
Query: 181 LN-----NGYHVVLSNIYAEA 196
++ +GY + SN + EA
Sbjct: 317 VSWTAMIDGY--IRSNRFKEA 335
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 2/130 (1%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88
G + ARR+F E+ E +F W+ MI+G + + ++ + +M+ G+KP+ TF L
Sbjct: 66 GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 125
Query: 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPN 148
++ GR+ + ++G+ + + +V + G L A P K +
Sbjct: 126 KGFTRDIALEYGRQ-LHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCP-KAD 183
Query: 149 GVVWGALLGG 158
+ W ++
Sbjct: 184 VITWNMIISA 193
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 186/351 (52%), Positives = 258/351 (73%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V Y +++ + + V N LIDMY KCG + A++VF EM + FTW+AMI GLAI+G
Sbjct: 362 VKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGH 421
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL F+ MIE I P+ +T+IG+L AC H G V++G+ FF SMT ++GI P + HYG
Sbjct: 422 GEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYG 481
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L+EA+E I NMP+KPN +VWG+LLG CRVHKN+ LAE A++Q+ +L+P
Sbjct: 482 CMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPE 541
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N +V+L NIYA +RWE++ +VRKLM G+KKTPG S + ++G V+EFVAGD++HPQ
Sbjct: 542 NGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQ 601
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I+ E ++ + GY P+TS V LD+ E++KE LYRHSEKLA+ + L+++ PG
Sbjct: 602 SKEIYAKLENMMQDLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGI 661
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLR+C DCH KL+SE NRE++VRD+ RFH F+ GSCSC ++W
Sbjct: 662 TIRIVKNLRMCVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 84/173 (48%), Gaps = 4/173 (2%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
+ GF N+ V I M+ C ++ AR+VF + V TW+ M+ G Q K++
Sbjct: 135 KHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKM 194
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMVDL 126
F +M + G+ PN VT + +L AC + ++ G+ + + GI+ + + ++D+
Sbjct: 195 LFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYING--GIVERNLILENVLIDM 252
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
+ G + EA NM + + + W +++ G IDLA + Q+ + D
Sbjct: 253 FAACGEMDEAQSVFDNMKNR-DVISWTSIVTGFANIGQIDLARKYFDQIPERD 304
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 84/192 (43%), Gaps = 33/192 (17%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+++Y N RN+ + N LIDM+ CG ++ A+ VF M+ R V +W++++ G A GQ
Sbjct: 230 IYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQ 289
Query: 62 AK-------------------------------EALTSFNKMIEIGIKPNGVTFIGLLHA 90
EAL F +M +KP+ T + +L A
Sbjct: 290 IDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTA 349
Query: 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGV 150
C H+G ++ G + + + I ++D+ + G + +A + + M K +
Sbjct: 350 CAHLGALELG-EWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHK-DKF 407
Query: 151 VWGALLGGCRVH 162
W A++ G ++
Sbjct: 408 TWTAMIVGLAIN 419
>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
Length = 492
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 184/351 (52%), Positives = 256/351 (72%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + ++++ LIDMY KCG +E A+RVF M E+ V TWS+MI GLA HG
Sbjct: 142 VHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGL 201
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
E+L+ F+KMI G+KPNGVTF+G+L AC H+G V EG+++F SM +GI P +EHYG
Sbjct: 202 GHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYG 261
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL R+G ++EA + IR+M +P+ ++W ALLG CR+HKN+++AEEA +L LDPL
Sbjct: 262 CMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVLDPL 321
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+G++V+LSNIYA+A WE VA +RK +R +++ PG SSI D +HEFV+GD HP+
Sbjct: 322 GDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEFVSGDRLHPR 381
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I+++ E+++D +K GY P T +VL DI+E+ KE+ L HSEKLA+ F L+ TP +
Sbjct: 382 SKEIYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQSKERSLAEHSEKLAIAFALLTTPARS 441
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI KNLR CEDCH+A KLIS + +R+++VRDRNRFH F G CSC DYW
Sbjct: 442 TIRITKNLRACEDCHSAMKLISLVYDRKLIVRDRNRFHHFSEGQCSCKDYW 492
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 8/153 (5%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ NT+I Y G + AR +F E+R F+WS+MI A ++KEAL + +M
Sbjct: 52 RDLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREM 111
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEG---RRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
I P+ +T + ++ AC +G + G RF S E ++ ++D+ ++
Sbjct: 112 HAASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIEL----DLKLGTALIDMYAK 167
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
G ++ A MP K + W +++ G H
Sbjct: 168 CGDIESAQRVFDRMPEK-DVQTWSSMIIGLANH 199
>gi|115473599|ref|NP_001060398.1| Os07g0636900 [Oryza sativa Japonica Group]
gi|113611934|dbj|BAF22312.1| Os07g0636900, partial [Oryza sativa Japonica Group]
Length = 352
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 184/351 (52%), Positives = 256/351 (72%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + ++++ LIDMY KCG +E A+RVF M E+ V TWS+MI GLA HG
Sbjct: 2 VHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGL 61
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
E+L+ F+KMI G+KPNGVTF+G+L AC H+G V EG+++F SM +GI P +EHYG
Sbjct: 62 GHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYG 121
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL R+G ++EA + IR+M +P+ ++W ALLG CR+HKN+++AEEA +L LDPL
Sbjct: 122 CMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVLDPL 181
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+G++V+LSNIYA+A WE VA +RK +R +++ PG SSI D +HEFV+GD HP+
Sbjct: 182 GDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEFVSGDRLHPR 241
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I+++ E+++D +K GY P T +VL DI+E+ KE+ L HSEKLA+ F L+ TP +
Sbjct: 242 SKEIYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQSKERSLAEHSEKLAIAFALLTTPARS 301
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI KNLR CEDCH+A KLIS + +R+++VRDRNRFH F G CSC DYW
Sbjct: 302 TIRITKNLRACEDCHSAMKLISLVYDRKLIVRDRNRFHHFSEGQCSCKDYW 352
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 182/351 (51%), Positives = 253/351 (72%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+ Y +++ + ++ V N LIDMY KCG ++ A +F EM +R FTW+AMI GLA++G
Sbjct: 394 IRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGH 453
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL F+ M++ I P+ +T+IG+L AC H G VD+GR++F MT+++GI P I HYG
Sbjct: 454 GEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYG 513
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL+RAG L+EAYE I NMPIK N +VWGALL GCRV++ D+AE +Q+ +L+P
Sbjct: 514 CLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPD 573
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N +V+L NIYA +RW D+ +R++M + G+KK PG S I ++G VHEFVAGD +HPQ
Sbjct: 574 NGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQ 633
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ I +K+ +KL GY P+ S V LDI E++KE ++RHSEKLA+ FGL+N+PPG
Sbjct: 634 TKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGV 693
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI KNLR+C DCH KL+S++ NRE++VRDR RFH F+ G CSC DYW
Sbjct: 694 TIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 744
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 78/193 (40%), Gaps = 33/193 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGA-------------------------- 34
+VH Y N+ + N +IDMY CG ++ A
Sbjct: 261 KVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLG 320
Query: 35 -----RRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH 89
R F +M E+ +W+AMI G + KEAL F M +KP+ T + +L
Sbjct: 321 EIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLT 380
Query: 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNG 149
AC H+G ++ G + + I + ++D+ + G + +A R M + +
Sbjct: 381 ACAHLGALELG-EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQR-DK 438
Query: 150 VVWGALLGGCRVH 162
W A++ G V+
Sbjct: 439 FTWTAMIVGLAVN 451
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 93/201 (46%), Gaps = 9/201 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G + N+ V L+ MY+ CG L+ AR VF + V TW+ +I G
Sbjct: 160 QLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVG 219
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +E+ F M + + P VT + +L AC + + G++ +S + +
Sbjct: 220 KFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKK-VHSYVKNCKVESNLVLE 278
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
M+D+ + G + A R+M + + + W ++ G ID+A ++ + D
Sbjct: 279 NAMIDMYADCGEMDSALGIFRSMNNR-DIISWTTIVSGFTNLGEIDVARNYFDKMPEKDY 337
Query: 181 LN-----NGYHVVLSNIYAEA 196
++ +GY + SN + EA
Sbjct: 338 VSWTAMIDGY--IRSNRFKEA 356
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 2/130 (1%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88
G + ARR+F E+ E +F W+ MI+G + + ++ + +M+ G+KP+ TF L
Sbjct: 87 GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 146
Query: 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPN 148
++ GR+ + ++G+ + + +V + G L A P K +
Sbjct: 147 KGFTRDIALEYGRQ-LHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCP-KAD 204
Query: 149 GVVWGALLGG 158
+ W ++
Sbjct: 205 VITWNMIISA 214
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 184/351 (52%), Positives = 259/351 (73%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y ++ + + + L+DMY KCG L+ VF EM+ER +FTW+AMI GLAIHG+
Sbjct: 316 VHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGR 375
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A++AL F+K+ E +KPNG+T +G+L AC H G+VD+G R F +M YG+ P++EHYG
Sbjct: 376 AEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYG 435
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL R+G EA + I +MP+KPN VWGALLG CR+H N DLAE + L +L+P
Sbjct: 436 CMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQ 495
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +V+LSNIYA+ R++DV+++RKLM+N G+K PG S + ++G VHEF GD +HPQ
Sbjct: 496 NSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQ 555
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I++ + + + +++ G+ P+TS VL DI+E+EKE + HSEKLA+ FGL+NT PG
Sbjct: 556 MKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGK 615
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I I+KNLRVC+DCH+A KLIS+I +REI+VRDR R+H F+ G+CSC D+W
Sbjct: 616 RIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 2/176 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+NI N +I+ K G L AR++F EM ER +WS+M+ G G+ KEAL F +M
Sbjct: 226 KNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQM 285
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+P +L AC ++G +D+G R+ ++ I ++D+ ++ G
Sbjct: 286 QREETRPGRFILSSVLAACSNIGAIDQG-RWVHAYLKRNSIKLDAVLGTALLDMYAKCGR 344
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVV 188
L +E M + W A++GG +H + A E +L + NG +V
Sbjct: 345 LDMGWEVFEEMKER-EIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLV 399
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 110/253 (43%), Gaps = 18/253 (7%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVK--CGCLEGARRVFIEMEERTVFTWSAMIQGLAI 58
++H +SG ++ V L+ Y + A +VF + VF W+ +I+G
Sbjct: 51 QLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLE 110
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+ + +A+ + +M+ I +PN T+ L AC V EGR+ + ++GI +
Sbjct: 111 NNKLFKAIYFYGRMV-IDARPNKFTYPTLFKACSVAQAVQEGRQ-IHGHVVKHGIGSDVH 168
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ + + G L++A + + + + V W ++ G + + E A Q+
Sbjct: 169 IKSAGIQMYASFGRLEDARKMFYSG--ESDVVCWNTMIDG---YLKCGVLEAAKGLFAQM 223
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
N G V+ N A+ D RKL + + WSS+ VDG + AG
Sbjct: 224 PVKNIGSWNVMINGLAKGGNLGD---ARKLFDEMSERDEISWSSM-VDGYIS---AG--R 274
Query: 239 HPQAEKIFQMWEK 251
+ +A +IFQ ++
Sbjct: 275 YKEALEIFQQMQR 287
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 108/265 (40%), Gaps = 27/265 (10%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G ++ + + I MY G LE AR++F E V W+ MI G G
Sbjct: 153 QIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVV-CWNTMIDGYLKCG 211
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ A F +M I V GL G++G + R+ F M+ I +
Sbjct: 212 VLEAAKGLFAQMPVKNIGSWNVMINGLAKG-GNLG---DARKLFDEMSERDEI-----SW 262
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
MVD AG +EA E + M +P + ++L C ID L +
Sbjct: 263 SSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKR 322
Query: 178 LD-PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGD 236
L+ L ++YA+ R + V + M+ ++ W+++ + G
Sbjct: 323 NSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKE---REIFTWNAM---------IGGL 370
Query: 237 ETHPQAEKIFQMWEKLLDG-MKLKG 260
H +AE +++ KL +G MK G
Sbjct: 371 AIHGRAEDALELFSKLQEGRMKPNG 395
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/352 (52%), Positives = 253/352 (71%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R H Y + G N+ N L+D+Y KCG + A +VF EMEE++V +W+++I GLA++G
Sbjct: 262 RAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNG 321
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
KEAL F ++ G+ P+ +TF+G+L+AC H G VDEG +F M EYGI+P+IEHY
Sbjct: 322 FGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHY 381
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLL RAG +++A+EFI+NMP++PN VVW LLG C +H ++ L E A QL QL+P
Sbjct: 382 GCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEP 441
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++G +V+LSN+YA +RW DV +VR+ M GVKKTPG S + + +HEFV GD +HP
Sbjct: 442 KHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHP 501
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q E+I+ ++ +KL+GY+P+ S VL DIEE+EKE L HSEK+A+ F L+NT G
Sbjct: 502 QTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAAG 561
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR++KNLRVC DCH A KLIS++ +REIVVRDR+RFH F+ G CSC DYW
Sbjct: 562 IPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRSRFHHFKDGHCSCKDYW 613
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 138/294 (46%), Gaps = 19/294 (6%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + ++GF + V NTL+ MY CG E A ++F M ER + TW+++I G A++G
Sbjct: 161 KVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNG 220
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EALT F +M G++P+G T + LL AC +G + GRR M + G+ +
Sbjct: 221 RPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYM-VKVGLDGNLHAG 279
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ--L 178
++DL ++ G +++A++ M K + V W +L+ G V+ A E ++L++ L
Sbjct: 280 NALLDLYAKCGSIRQAHKVFDEMEEK-SVVSWTSLIVGLAVNGFGKEALELFKELERKGL 338
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD-----GVV---H 230
P + VL E +++ G+ VD G+V H
Sbjct: 339 MPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAH 398
Query: 231 EFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVV---LLDIEEKEKEKFL 281
EF+ P A +W LL + G++ V LL +E K ++
Sbjct: 399 EFIQNMPMQPNA----VVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYV 448
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 2/131 (1%)
Query: 28 CGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGL 87
C + A ++F +++ +FTW+ MI+G A AL + +M I+P+ T+ L
Sbjct: 87 CSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFL 146
Query: 88 LHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKP 147
L A + V EG + +S+ G + +V + + G + A++ M +
Sbjct: 147 LKAIAKLMDVREGEK-VHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAER- 204
Query: 148 NGVVWGALLGG 158
N V W +++ G
Sbjct: 205 NLVTWNSVING 215
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/351 (52%), Positives = 257/351 (73%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+ Y +++ + + V N LIDMY CG +E A R+F M R +W+A+I GLAI+G
Sbjct: 374 IKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGY 433
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL F++M++ I P+ VT IG+L AC H G VD+G++FF MTT++GI P + HYG
Sbjct: 434 GEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYG 493
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L+EA+E I+NMP+KPN +VWG+LLG CRVH++ ++AE A++Q+ +L+P
Sbjct: 494 CMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPE 553
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N +V+L NIYA RWE + VRKLM + G+KKTPG S I ++G VHEFVAGD+ HPQ
Sbjct: 554 NGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVHPQ 613
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I+ +++ +K GY P+TS V LDI E+EKE +YRHSEKLA+ FGL+++ PG
Sbjct: 614 SKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRHSEKLAIAFGLISSGPGV 673
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLR+C DCH KL+S++ NRE++VRDR RFH F+ GSCSC DYW
Sbjct: 674 TIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHFRHGSCSCKDYW 724
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 100/214 (46%), Gaps = 5/214 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H++ + GF N+ V N LI +Y G + AR VF + V TW+ MI G Q
Sbjct: 141 LHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQ 200
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
E++ F++M + + P+ +T + +L AC + ++ G+R + + I P
Sbjct: 201 FDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKR-VHRYVKDLKIEPVRVLEN 259
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
++D+ + G + A NM + + + W A++ G + LA ++ + D +
Sbjct: 260 ALIDMYAACGDMDTALGIFDNMKSR-DVISWTAIVTGFTNLGQVGLARNYFDKMPERDFV 318
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVK 215
+ + + Y + R+++V + + M+ +K
Sbjct: 319 S---WTAMIDGYLQVNRFKEVLSLFREMQAANIK 349
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 85/210 (40%), Gaps = 38/210 (18%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH Y + N LIDMY CG ++ A +F M+ R V +W+A++ G G
Sbjct: 241 RVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLG 300
Query: 61 QA-------------------------------KEALTSFNKMIEIGIKPNGVTFIGLLH 89
Q KE L+ F +M IKP+ T + +L
Sbjct: 301 QVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILT 360
Query: 90 ACGHMGWVDEGRRF-FYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPN 148
AC H+G ++ G Y E I + + ++D+ G +++A MP + +
Sbjct: 361 ACAHLGALELGEWIKAYIDKNEIKIDSFVGN--ALIDMYFNCGNVEKAIRIFNAMPHR-D 417
Query: 149 GVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ W A++ G ++ EEA Q+
Sbjct: 418 KISWTAVIFGLAIN---GYGEEALDMFSQM 444
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 97/220 (44%), Gaps = 9/220 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVK--CGCLEGARRVFIEMEERTVFTWSAMIQGLAI 58
++H + +G N V +I K G +E AR VF M F W+ MI+G +
Sbjct: 37 QIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSR 96
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
G A++ + +M+E G+ P+ T+ LL V GR + + G +
Sbjct: 97 VGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRE-LHDHIVKLGFSSNVF 155
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++ L S +G + A + + K + V W ++ G K D + + +++++
Sbjct: 156 VQNALIHLYSLSGEVSVA-RGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERM 214
Query: 179 DPLNNGYHVVLSNIYAEAERWEDV---ARVRKLMRNLGVK 215
L + + L ++ + + +D+ RV + +++L ++
Sbjct: 215 RVLPSS--ITLVSVLSACSKLKDLNVGKRVHRYVKDLKIE 252
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 187/351 (53%), Positives = 251/351 (71%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y ++G + N+ + TL+DMY+KCGC+E A VF MEE+ V +W+A+I GLA++G
Sbjct: 458 VHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGL 517
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ +L F++M G+ PN +TF+G+L AC HMG VDEGR F SM ++GI P ++HYG
Sbjct: 518 VERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYG 577
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L EA + I +MP+ P+ WGALLG C+ H + ++ E R+L +L P
Sbjct: 578 CMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPD 637
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G+HV+LSNI+A WEDV VR +M+ GV KTPG S I +GVVHEF+AGD+THP
Sbjct: 638 HDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPW 697
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
K+ M ++ +K++GY P+T+ V LDI+E+EKE L+RHSEKLA+ FGL+ P T
Sbjct: 698 INKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTISPPT 757
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRIMKNLR+C DCH A KLIS+ REIVVRDR+RFH F+ G+CSC DYW
Sbjct: 758 PIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 808
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 86/168 (51%), Gaps = 11/168 (6%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N++I +KCG +E AR +F M E+ + +WSA+I G A H E L F++M I+
Sbjct: 374 NSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIR 433
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ + ++ AC H+ +D+G ++ ++ + G+ + ++D+ + G ++ A E
Sbjct: 434 PDETILVSVISACTHLAALDQG-KWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALE 492
Query: 139 FIRNMPIKPNGV-VWGALLGGCRVHKNIDLAEEASRQLDQLDPL-NNG 184
M K GV W AL+ G V+ ++ R LD + NNG
Sbjct: 493 VFNGMEEK--GVSSWNALIIGLAVNGLVE------RSLDMFSEMKNNG 532
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 77/148 (52%), Gaps = 2/148 (1%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+RNI N++I + K G + A ++F EM+E+ + +WSA+I G +G +EAL F +
Sbjct: 235 QRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIE 294
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M G++ + V + +L AC H+ V G + + + GI + ++ + S +G
Sbjct: 295 MNANGMRLDEVVVVSVLSACAHLSIVKTG-KMIHGLVIRMGIESYVNLQNALIHMYSGSG 353
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGC 159
+ +A + N + + W +++ GC
Sbjct: 354 EIMDAQKLF-NGSHNLDQISWNSMISGC 380
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H++ + GF ++ V NTLI+MY CG + AR++F E +W++++ G G
Sbjct: 163 IHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGD 222
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM 107
+EA F++M + I + + L G MG V E + F M
Sbjct: 223 VEEAKLIFDQMPQRNIVASNSMIVLL----GKMGQVMEAWKLFNEM 264
>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/351 (54%), Positives = 249/351 (70%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y +G N+RV +LIDMY KCG LE AR VF + + V W++M+ G A+HG
Sbjct: 94 VHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDVVAWNSMVVGYAMHGF 153
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+++AL F +M IG +P +TFIG+L+AC H G V EG +FFYSM EYGI P++EHYG
Sbjct: 154 SQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYG 213
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMV+LL RAG+L+EAYE ++NM I + V+WG LLG CR+H NI L E+ + L +
Sbjct: 214 CMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLHGNIALGEQIAEYLVSQNLA 273
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +V+LSNIYA A WE VARVR LM+ G +K PG SSI V+ VHEF+AGD HP+
Sbjct: 274 NSGTYVLLSNIYAAAGNWEGVARVRTLMKESGFEKEPGCSSIEVNNKVHEFLAGDLRHPK 333
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ +I++M E++ +K GY P T +VL D+E+ +KE+ L HSEKLAL FGL+ T PGT
Sbjct: 334 SREIYEMLEEINGWLKTHGYTPQTDIVLHDLEDAQKERSLGVHSEKLALAFGLITTKPGT 393
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I+I+KNLRVC DCHA KLIS+I R++V+RDRNRFH F G CSCGDYW
Sbjct: 394 TIKIVKNLRVCADCHAVTKLISKITGRKVVMRDRNRFHHFVNGLCSCGDYW 444
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 8/147 (5%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
+I Y K G ++ AR +F +EER W+ MI G A HG E L F +M+ ++
Sbjct: 10 TAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVR 69
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA-- 136
PN VT + +L ACG G ++ G R+ +S GI + ++D+ S+ G L++A
Sbjct: 70 PNEVTVLAVLSACGQTGALETG-RWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARL 128
Query: 137 -YEFIRNMPIKPNGVVWGALLGGCRVH 162
+E I N + V W +++ G +H
Sbjct: 129 VFERISNKDV----VAWNSMVVGYAMH 151
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 185/351 (52%), Positives = 251/351 (71%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y + I + L+D Y KCGC++ A F M + +TW+A+I+G+A +G+
Sbjct: 343 VHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGR 402
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL F+ M + I+P VTFIG+L AC H V+EGRR F SMT +YGI P+ EHYG
Sbjct: 403 GREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYG 462
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL RAG + EAY+FIR MPI+PN V+W ALL C VHKN+++ EEA +Q+ L+P
Sbjct: 463 CVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLNPS 522
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +++LSNIYA +W++ A +RK M++ G++KTPG S I +DGVV EF A D HPQ
Sbjct: 523 HSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVEFFAEDSDHPQ 582
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I+Q E+++D +K+ GYIPNT+ V L+++E EKE + HSEKLA+ FGLM PG
Sbjct: 583 LKEIYQKVEEMIDRIKMAGYIPNTADVRLEVDEHEKEVSVSHHSEKLAIAFGLMKLDPGA 642
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR+ KNLRVC DCH+A KLIS++ NREIVVRDRNRFH F+ G+CSC DYW
Sbjct: 643 TIRLSKNLRVCTDCHSATKLISKVYNREIVVRDRNRFHHFKDGTCSCNDYW 693
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 85/164 (51%), Gaps = 16/164 (9%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V EY ++ G RN + LIDMY KCG L ARR+F M+ R V WSAMI G Q
Sbjct: 242 VAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQ 301
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG-------RRFFYSMTTEYGII 114
+EAL F++M ++PN VT + +L AC +G ++ G RR S+T G
Sbjct: 302 CREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGT- 360
Query: 115 PQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD ++ G + +A E +MP+K N W AL+ G
Sbjct: 361 -------ALVDFYAKCGCIDDAVEAFESMPVK-NSWTWTALIKG 396
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 115/273 (42%), Gaps = 26/273 (9%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+ Y+ + G + V ++LI MY C + A+ +F +EE V W+A+I +G
Sbjct: 141 IQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGN 200
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
E + F M+E+G+ + +T + ++ ACG +G G ++ E G++
Sbjct: 201 WMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLG-KWVAEYVDEKGLVRNRNLMT 259
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA-----SRQLD 176
++D+ ++ G L +A M + + V W A++ G + D EA QL
Sbjct: 260 ALIDMYAKCGELGKARRLFDGMQSR-DVVAWSAMISG---YTQADQCREALALFSEMQLA 315
Query: 177 QLDPLNNGYHVVLSNIYA----EAERWEDVARVRKLMRNLGVKKTPGWSSITVD-----G 227
+++P + VLS E +W V +R + T + VD G
Sbjct: 316 EVEPNDVTMVSVLSACAVLGALETGKW-----VHSYIRRKRLSLTIILGTALVDFYAKCG 370
Query: 228 VVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKG 260
+ + V E+ P K W L+ GM G
Sbjct: 371 CIDDAVEAFESMPV--KNSWTWTALIKGMATNG 401
>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 801
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 175/351 (49%), Positives = 253/351 (72%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y ++ G + ++ + + +DMY CG ++ A R+F E +R + W+AMI G A+HG
Sbjct: 451 IHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGH 510
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ AL F +M +G+ PN +TFIG LHAC H G + EG+R F+ M E+G P++EHYG
Sbjct: 511 GEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYG 570
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L EA+E I++MP++PN V+G+ L C++HKNI L E A++Q L+P
Sbjct: 571 CMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPH 630
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+GY+V++SNIYA A RW DVA +R+ M++ G+ K PG SSI V+G++HEF+ GD HP
Sbjct: 631 KSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDREHPD 690
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A+K+++M +++ + ++ GY P+ S VL +I++++K L HSEKLA+ +GL++T PG
Sbjct: 691 AKKVYEMIDEMREKLEDAGYTPDVSCVLHNIDKEKKVSALNYHSEKLAMAYGLISTAPGV 750
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVC+DCH A KL+S+I REI+VRDRNRFH F+ GSCSC DYW
Sbjct: 751 PIRIVKNLRVCDDCHNATKLLSKIYGREIIVRDRNRFHHFKEGSCSCCDYW 801
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 2/177 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ ++GF ++ + IDMY KCG + AR VF + + + WSAMI A +
Sbjct: 350 LHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNC 409
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA F M GI+PN T + LL C G ++ G ++ +S + GI +
Sbjct: 410 IDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMG-KWIHSYIDKQGIKGDMILKT 468
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
VD+ + G + A+ + + +W A++ G +H + + A E +++ L
Sbjct: 469 SFVDMYANCGDIDTAHRLFAEATDR-DISMWNAMISGFAMHGHGEAALELFEEMEAL 524
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 4/169 (2%)
Query: 2 VHEYSNQSGF--RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
+H Y ++G + + +C LIDMYVKC L ARRVF + + ++ +W+AMI
Sbjct: 247 MHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHC 306
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
E + F KM+ G+ PN +T + L+ CG G ++ G + ++ T G +
Sbjct: 307 NNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELG-KLLHAFTLRNGFTLSLVL 365
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
+D+ + G ++ A + K + ++W A++ + ID A
Sbjct: 366 ATAFIDMYGKCGDVRSARSVFDSFKSK-DLMMWSAMISSYAQNNCIDEA 413
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + ++GF ++ VCN LI MY + G L AR +F ++E + V +WS MI+ G
Sbjct: 146 VHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGL 205
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR 101
EAL M + +KP+ + I + H + + G+
Sbjct: 206 LDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGK 245
>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
Length = 1740
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 184/352 (52%), Positives = 252/352 (71%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+HEY + + N+ + N LIDMY KCGCLE AR VF +M+ R V +W++MI ++G
Sbjct: 1316 RIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNG 1375
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ ++A++ F++M ++G+ P+ + F+ +L AC H G +DEGR +F MT E I+P+IEH+
Sbjct: 1376 KGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHF 1435
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG + EAY FI+ MP++PN VWGALL CRV+ N+ + A+ QL QL P
Sbjct: 1436 VCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCP 1495
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+GY+V+LSNIYA+A RWEDV VR +M+ G+KK PG S+ +D VH F+AGD++HP
Sbjct: 1496 EQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHP 1555
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q+++I++ + L+ MK GY+P T L D+EE++KE L HSEKLA+ F ++NT PG
Sbjct: 1556 QSKQIYEELDVLVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPG 1615
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+PIRI KNLRVC DCH A KLIS+IV REI +RD NRFH F G CSCGDYW
Sbjct: 1616 SPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 1667
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 10/164 (6%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G N+ V N LI MY KCGCL A RV ZM R V +W++++ G A +G
Sbjct: 1147 QIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNG 1206
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH--MGWVDEGRRFFYSMTTEYGIIPQIE 118
Q +AL +M +G+KP+ T LL A + + V + F + + +
Sbjct: 1207 QFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANK-----SLV 1261
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNM---PIKPNGVVWGALLGGC 159
+ M+ + EA + M + P+ + ++L C
Sbjct: 1262 SWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPAC 1305
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 78/166 (46%), Gaps = 7/166 (4%)
Query: 30 CLEGA---RRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIG 86
CL+ + +F+++ +++ +W+ MI + EA+ F +M + + P+ ++
Sbjct: 1241 CLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIAS 1300
Query: 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIK 146
+L ACG + + GRR + + P + ++D+ ++ G L+ A E M +
Sbjct: 1301 VLPACGDLSALLLGRR-IHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFR 1359
Query: 147 PNGVVWGALLGGCRVH-KNIDLAEEASRQLD-QLDPLNNGYHVVLS 190
+ V W +++ ++ K D SR D L+P + + VLS
Sbjct: 1360 -DVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLS 1404
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 2/158 (1%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
L+ Y CG R +F E+ ++ V ++ MI+ + +AL F M GI P+
Sbjct: 1066 LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 1125
Query: 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFI 140
T+ +L A + G + ++ G+ + ++ + + G L EA +
Sbjct: 1126 HYTYPCVLKASSGSEDLWVGMQI-HAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVL 1184
Query: 141 RNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
MP + + V W +L+ GC + D A E ++++ L
Sbjct: 1185 DZMPCR-DVVSWNSLVAGCARNGQFDDALEVCKEMELL 1221
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 183/351 (52%), Positives = 259/351 (73%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y ++ + + + L+DMY KCG L+ VF EM+ER +FTW+AMI GLAIHG+
Sbjct: 316 VHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGR 375
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A++AL F+K+ E +KPNG+T +G+L AC H G+VD+G R F +M YG+ P++EHYG
Sbjct: 376 AEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYG 435
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL R+G EA + I +MP+KPN VWGALLG CR+H N DLAE + L +L+P
Sbjct: 436 CMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQ 495
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +V+LSNIYA+ R++DV+++RKLM++ G+K PG S + ++G VHEF GD +HPQ
Sbjct: 496 NSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQ 555
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I++ + + + +++ G+ P+TS VL DI+E+EKE + HSEKLA+ FGL+NT PG
Sbjct: 556 MKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGK 615
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I I+KNLRVC+DCH+A KLIS+I +REI+VRDR R+H F+ G+CSC D+W
Sbjct: 616 RIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 2/176 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+NI N +I+ K G L AR++F EM ER +WS+M+ G G+ KEAL F +M
Sbjct: 226 KNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQM 285
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+P +L AC ++G +D+G R+ ++ I ++D+ ++ G
Sbjct: 286 QREETRPGRFILSSVLAACSNIGAIDQG-RWVHAYLKRNSIKLDAVLGTALLDMYAKCGR 344
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVV 188
L +E M + W A++GG +H + A E +L + NG +V
Sbjct: 345 LDMGWEVFEEMKEREI-FTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLV 399
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 110/253 (43%), Gaps = 18/253 (7%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVK--CGCLEGARRVFIEMEERTVFTWSAMIQGLAI 58
++H +SG ++ V L+ Y + A +VF + VF W+ +I+G
Sbjct: 51 QLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLE 110
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+ + +A+ + +M+ I +PN T+ L AC V EGR+ + ++GI +
Sbjct: 111 NNKLFKAIYFYGRMV-IDARPNKFTYPTLFKACSVAQAVQEGRQ-IHGHVVKHGIGSDVH 168
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ + + G L++A + + + + V W ++ G + + E A Q+
Sbjct: 169 IKSAGIHMYASFGRLEDARKMFYSG--ESDVVCWNTMIDG---YLKCGVLEAAKGLFAQM 223
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
N G V+ N A+ D RKL + + WSS+ VDG + AG
Sbjct: 224 PVKNIGSWNVMINGLAKGGNLGD---ARKLFDEMSERDEISWSSM-VDGYIS---AG--R 274
Query: 239 HPQAEKIFQMWEK 251
+ +A +IFQ ++
Sbjct: 275 YKEALEIFQQMQR 287
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 108/265 (40%), Gaps = 27/265 (10%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G ++ + + I MY G LE AR++F E V W+ MI G G
Sbjct: 153 QIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVV-CWNTMIDGYLKCG 211
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ A F +M I V GL G++G + R+ F M+ I +
Sbjct: 212 VLEAAKGLFAQMPVKNIGSWNVMINGLAKG-GNLG---DARKLFDEMSERDEI-----SW 262
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
MVD AG +EA E + M +P + ++L C ID L +
Sbjct: 263 SSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKR 322
Query: 178 LD-PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGD 236
L+ L ++YA+ R + V + M+ ++ W+++ + G
Sbjct: 323 NSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKE---REIFTWNAM---------IGGL 370
Query: 237 ETHPQAEKIFQMWEKLLDG-MKLKG 260
H +AE +++ KL +G MK G
Sbjct: 371 AIHGRAEDALELFSKLQEGRMKPNG 395
>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 585
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 178/351 (50%), Positives = 257/351 (73%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + ++++ L+DMY KCG +E + +VF M + V TWS+MI GLA HG
Sbjct: 235 VHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGL 294
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+AL+ F++MI G++PN +TFIG+L AC H+G V++G+++F SM+ +G++P++EHYG
Sbjct: 295 GHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYG 354
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG ++EA E IR+M KP+ ++W LLG CR+HKN+++AEEA +L LDPL
Sbjct: 355 CMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPL 414
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+G++V+LSNIYA+A WE VA +RK +R +++ PG SSI + VHEFV+GD +HP+
Sbjct: 415 ADGHYVLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRSSIEWENTVHEFVSGDRSHPR 474
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E+I++M E+++D ++ GY P TS+VL DI+E+ K++ L HSEKLA+ FGL+ TP +
Sbjct: 475 IEEIYKMLEEMMDRLRQAGYRPMTSLVLQDIDEQSKKRALAEHSEKLAIAFGLLVTPARS 534
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+RI KNLR CEDCH+A KLIS +R+++VRDRNRFH F G CSC DYW
Sbjct: 535 TLRITKNLRACEDCHSAIKLISLAYDRKLIVRDRNRFHHFSEGQCSCKDYW 585
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 8/153 (5%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ NT+I Y G + AR +F +R F+WS+MI A +KEAL + +M
Sbjct: 145 RDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREM 204
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEG---RRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
G+ P+ ++ + +L AC MG + G RF S E ++ +VD+ ++
Sbjct: 205 RVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEV----DMKLGTALVDMYAK 260
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
G ++ + + MP+K + + W +++ G H
Sbjct: 261 CGDIENSLKVFHAMPVK-DVLTWSSMIIGLANH 292
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 183/351 (52%), Positives = 249/351 (70%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y + + + L+D Y KCGC++ A + F M R +TW+A+I+G+A +G+
Sbjct: 395 VHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGR 454
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++EAL F+ M+E I+P VTFIG+L AC H V+EGRR F SMT +YGI P+IEHYG
Sbjct: 455 SREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYG 514
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG + EAY+FIRNMPI+PN VVW ALL C VHKN+++ EEA +Q+ LDP
Sbjct: 515 CMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPC 574
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +++LSN YA +W++ A VRK M+ GV+K PG S I ++G + EF A D HPQ
Sbjct: 575 HSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQ 634
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I++ ++++ +K+ GYIPNT+ LD++E EK+ + HSEKLA+ FGLM + PG
Sbjct: 635 LTEIYEKVHEMIENIKMVGYIPNTADARLDVDEYEKQVSVSHHSEKLAIAFGLMKSRPGA 694
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR+ KNLRVC DCH+A KLIS++ NREI+VRDRNRFH F+ G CSC DYW
Sbjct: 695 TIRLSKNLRVCIDCHSATKLISKVYNREIIVRDRNRFHHFKDGLCSCNDYW 745
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+ EY+ + G R+ + L+DMY KCG L+ ARR+F M R V WSAMI G +
Sbjct: 294 IAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDR 353
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL FN+M + PN VT + +L AC +G ++ G ++ +S + +
Sbjct: 354 CREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETG-KWVHSYIRRKDLPLTVILGT 412
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD ++ G +++A + +MP++ N W AL+ G
Sbjct: 413 ALVDFYAKCGCIKDAVKAFESMPVR-NTWTWTALIKG 448
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V Y+ + GF + V N+LI MY CG + A +F ++ + V W+AMI G +G
Sbjct: 193 VQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGD 252
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KE + F M+E+ + VT + + ACG +G + G ++ E G++
Sbjct: 253 WKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLG-QWIAEYAEEKGMLRSRNLAT 311
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ ++ G L +A M + + V W A++ G
Sbjct: 312 ALVDMYAKCGELDKARRLFDRMHSR-DVVAWSAMISG 347
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 185/351 (52%), Positives = 249/351 (70%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y + + L+D Y KCGC++ A F M + +TW+A+I+G+A +G+
Sbjct: 344 VHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGR 403
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL F+ M E GI+P VTFIG+L AC H V+EGRR F SM +YGI P++EHYG
Sbjct: 404 GREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYG 463
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG + EAY+FIR MPI+PN V+W ALL C VH+N+ + EEA +Q+ L+P
Sbjct: 464 CMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPS 523
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +V+LSNIYA A +W+D A VRK M++ G++KTPG S I +DGVV EF A D HP+
Sbjct: 524 HSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSDHPE 583
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I+Q E+++ +K+ GY+PNT+ V L++EE+EKE + HSEKLA+ FGLM PG
Sbjct: 584 LREIYQKVEEMIGRIKVAGYVPNTADVRLEVEEREKEVSVSHHSEKLAIAFGLMKLDPGA 643
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR+ KNLRVC DCH+A KLIS++ +REIVVRDRN FH F+ G+CSC DYW
Sbjct: 644 TIRLSKNLRVCADCHSATKLISKVYDREIVVRDRNIFHHFKDGTCSCNDYW 694
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 86/164 (52%), Gaps = 16/164 (9%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V + ++ G RN ++ L+DMY KCG + ARR+F M+ R V WSAMI G Q
Sbjct: 243 VAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQ 302
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG-------RRFFYSMTTEYGII 114
+EAL F++M ++PN VT + +L AC +G ++ G RR S+TT G
Sbjct: 303 CREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGT- 361
Query: 115 PQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD ++ G + +A E +MP+K N W AL+ G
Sbjct: 362 -------ALVDFYAKCGCIDDAVEAFESMPVK-NSWTWTALIKG 397
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 115/273 (42%), Gaps = 26/273 (9%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V Y+ + G + V ++LI MY CG + AR VF EE V W+A++ +G
Sbjct: 142 VQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGD 201
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
E + F M+E+G+ + VT + ++ ACG +G G ++ E G+ +
Sbjct: 202 WMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLG-KWVAGHVDEEGLARNPKLVT 260
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA-----SRQLD 176
++D+ ++ G + +A M + + V W A++ G + D EA QL
Sbjct: 261 ALMDMYAKCGEIGKARRLFDGMQSR-DVVAWSAMISG---YTQADQCREALGLFSEMQLA 316
Query: 177 QLDPLNNGYHVVLSNIYA----EAERWEDVARVRKLMRNLGVKKTPGWSSITVD-----G 227
+++P + VLS E +W V +R + T + VD G
Sbjct: 317 RVEPNDVTMVSVLSACAVLGALETGKW-----VHSYVRRKRLSLTTILGTALVDFYAKCG 371
Query: 228 VVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKG 260
+ + V E+ P K W L+ GM G
Sbjct: 372 CIDDAVEAFESMPV--KNSWTWTALIKGMATNG 402
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 185/352 (52%), Positives = 255/352 (72%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + G + N + +LIDMY KCG L+ A VF +E + VF WSAMI GLA+HG
Sbjct: 392 IHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGH 451
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K+A+ F+KM E +KPN VTF +L AC H+G V+EGR FF M YG++P ++HY
Sbjct: 452 GKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYA 511
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+L RAG L+EA E I MP+ P VWGALLG C +H+N+ LAE+A QL +L+P
Sbjct: 512 CMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPG 571
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +V+LSNIYA+A +W+ V+ +RKLMR++G+KK PG SSI VDG+VHEF+ GD +HP
Sbjct: 572 NHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPS 631
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKE-KEKFLYRHSEKLALTFGLMNTPPG 300
A+KI+ ++++ ++ GY+PN S +L +EE++ KE+ L+ HSEKLA+ FGL++T
Sbjct: 632 AKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQS 691
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVC DCH+ KL+S++ +REI++RDR RFH F+ G CSC DYW
Sbjct: 692 QPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 743
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 74/145 (51%), Gaps = 2/145 (1%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ + N+LI Y KCG L RVF+ + R V +W++MI G +EAL F +M
Sbjct: 170 DVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEME 229
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
+KPNG+T +G+L AC + G R+ +S I + M+D+ ++ G +
Sbjct: 230 TQNVKPNGITMVGVLSACAKKSDFEFG-RWVHSYIERNRIGESLTLSNAMLDMYTKCGSV 288
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGG 158
++A MP K + V W +L G
Sbjct: 289 EDAKRLFDKMPEK-DIVSWTTMLVG 312
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 34/193 (17%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y ++ ++ + N ++DMY KCG +E A+R+F +M E+ + +W+ M+ G A G+
Sbjct: 259 VHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGE 318
Query: 62 -------------------------------AKEALTSFNKM-IEIGIKPNGVTFIGLLH 89
KEAL F+++ + KP+ VT + L
Sbjct: 319 YDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLS 378
Query: 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNG 149
AC +G +D G + + + G+ ++D+ + G LQ+A ++ K +
Sbjct: 379 ACAQLGAMDLG-GWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERK-DV 436
Query: 150 VVWGALLGGCRVH 162
VW A++ G +H
Sbjct: 437 FVWSAMIAGLAMH 449
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 48/233 (20%), Positives = 91/233 (39%), Gaps = 44/233 (18%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK-PNGVTFIGLLH 89
L+ A++VF ++ ++TW+ +I+ A ++L F +M+ P+ TF L+
Sbjct: 85 LDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIK 144
Query: 90 ACGHMGWVDEGRRF---------------------FYSMTTEYGI-------IPQ--IEH 119
A + + G+ F FY+ E G+ IP+ +
Sbjct: 145 AASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVS 204
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGCRVHKNIDLAEEASRQLD 176
+ M+ + G +EA E + M +KPNG+ +L C + + ++
Sbjct: 205 WNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIE 264
Query: 177 QLDPLNNGYHVVLSN----IYAEAERWEDVARVRKLMRNLGVKKTPGWSSITV 225
+ G + LSN +Y + ED R L + K W+++ V
Sbjct: 265 R---NRIGESLTLSNAMLDMYTKCGSVEDAKR---LFDKMPEKDIVSWTTMLV 311
>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 185/353 (52%), Positives = 255/353 (72%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIH 59
R H Y + G +N+ N L+D+Y KCG + AR++F EM ER V +W+++I GLA++
Sbjct: 128 RAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVN 187
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G KEAL F M G+ P+ +TF+G+L+AC H G V+EG +F M +Y I+P+IEH
Sbjct: 188 GFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEH 247
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YGCMVDLL RAG L+EAY++I++MP++PN V+W LLG C +H ++ L A +L QL+
Sbjct: 248 YGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFARARLLQLE 307
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P ++G +V+LSN+YA +RW DV VR+ M + GV+KTPG+S + + VHEFV GD TH
Sbjct: 308 PKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHVHEFVMGDRTH 367
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
PQ+E I++M ++ +KL GY+P+T+ VL DIEE+EKE L+ HSEK+A+ F L+NT P
Sbjct: 368 PQSEAIYKMLVEMAMKLKLAGYVPHTANVLADIEEEEKESALFYHSEKIAIAFMLINTLP 427
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GTPIRI+KNLRVC DCH A KLIS++ R+IVVRD +RFH F+ GSCSC DYW
Sbjct: 428 GTPIRIIKNLRVCADCHFAIKLISKVFERDIVVRDCSRFHHFRDGSCSCRDYW 480
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 77/144 (53%), Gaps = 6/144 (4%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
+T+I Y E A +VF M E+ + W+++I G A++G+ EALT + +M G++
Sbjct: 50 DTMITAY-----FESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVE 104
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+G T + LL AC + + GRR M + G+ + ++DL ++ G + EA +
Sbjct: 105 PDGFTMVSLLSACAELATLVLGRRAHVYM-VKVGLNKNLHANNALLDLYAKCGTISEARK 163
Query: 139 FIRNMPIKPNGVVWGALLGGCRVH 162
M I+ N V W +L+ G V+
Sbjct: 164 IFDEMGIERNVVSWTSLIVGLAVN 187
>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Brachypodium distachyon]
Length = 669
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 179/351 (50%), Positives = 249/351 (70%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G N+ V +++DMY KCG +E AR+ F +++E+ + +WSAMI G +HG
Sbjct: 319 IHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHGH 378
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL FN+M G PN +TFI +L AC H G +D+GR ++ +M +GI P +EHYG
Sbjct: 379 GQEALDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYG 438
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L EAY I+ M +KP+ +WGALL CR+HKN++LAE ++++L +LD
Sbjct: 439 CMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGALLSACRIHKNVELAEISAKRLFELDAT 498
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+V+LSNIYAEA W+DV R+R L++ G++K PG+SS+ + G H F GD++HPQ
Sbjct: 499 NCGYYVLLSNIYAEAGMWKDVERMRVLVKTRGIEKPPGYSSVELKGRTHLFYVGDKSHPQ 558
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I+ KLL+ M+ GY+PNT VL D++E+EK L+ HSEKLA+ F LMN+ PG+
Sbjct: 559 HKEIYSYLGKLLEKMQEAGYVPNTGSVLHDLDEEEKASALHIHSEKLAIAFALMNSVPGS 618
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I ++KNLRVC DCH A KLI++I REI+VRD RFH F+ GSCSCGDYW
Sbjct: 619 VIHVIKNLRVCTDCHTAIKLITKIAQREIIVRDLQRFHHFKDGSCSCGDYW 669
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 7/165 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCG--CLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
+H ++G + V NT++D Y K G L AR+VF ME + V +W++MI A +
Sbjct: 215 LHALVVKTGLDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTME-KDVVSWNSMIALYAQN 273
Query: 60 GQAKEALTSFNKMIEI--GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
G + +AL + KM+ + IK N VT +L AC H G + G + ++ G+ +
Sbjct: 274 GMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTG-KCIHNQVVRMGLEENV 332
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ S+ G ++ A + + + K N + W A++ G +H
Sbjct: 333 YVGTSVVDMYSKCGRVEMARKAFQKIKEK-NILSWSAMITGYGMH 376
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 183/351 (52%), Positives = 259/351 (73%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y N++ + + +LID+Y KCG + AR+VF M+ +++ +W+AMI GLA+HGQ
Sbjct: 384 IHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQ 443
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A +A F+KM GI+PN +TF+G+L AC H G VD G++FF SM +Y I P+ +HYG
Sbjct: 444 ADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYG 503
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CM+DLL RAG +EA ++NM +KP+G +WG+LLG CR H ++L E + +L +L+P
Sbjct: 504 CMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPD 563
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V+LSNIYA A +W+DVAR+R + + G+KK PG ++I VD VVHEF+ GD+ HPQ
Sbjct: 564 NPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQ 623
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+E I++M E++ + +K+ G++ +TS VL D++E+ KE L HSEKLA+ FGL++T PGT
Sbjct: 624 SEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKEGALSHHSEKLAIAFGLISTKPGT 683
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVC +CH+A KLIS+I NREI+ RDRNRFH F+ GSCSC DYW
Sbjct: 684 PIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCNDYW 734
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G N+++ N LIDMY KCG L+ AR +F +M ER V +W+ MI G KEAL F
Sbjct: 291 GLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALF 350
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+M+ G++P +TF+ +L +C H+G +D G+ + + + ++DL ++
Sbjct: 351 REMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTS-LIDLYAK 409
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL--DQLDP 180
G + A + M IK + W A++ G +H D A E ++ D ++P
Sbjct: 410 CGNIVAARQVFDGMKIK-SLASWNAMICGLAMHGQADKAFELFSKMSSDGIEP 461
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 3/152 (1%)
Query: 7 NQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEAL 66
+QS FR I LI Y G ++ AR++F EM + V +W+AMI G A G++KEAL
Sbjct: 188 DQSNFRDAISF-TALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEAL 246
Query: 67 TSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126
F M + + PN T + +L AC +D G S + G+ ++ ++D+
Sbjct: 247 LLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNS-MRSWIEDRGLCSNLKLVNALIDM 305
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
S+ G LQ A E +M ++ + + W ++GG
Sbjct: 306 YSKCGDLQTARELFDDM-LERDVISWNVMIGG 336
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 112/228 (49%), Gaps = 13/228 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYV--KCGCLEGARRVFIEMEERTVFTWSAMIQGLAI 58
++H + ++G + + LI+ + G + A +F +EE +F W++MI+GL++
Sbjct: 47 QIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSM 106
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
AL F +MI G++PN TF LL +C + EG++ ++ + G + +
Sbjct: 107 SLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQ-IHAHVLKLGFVSDVF 165
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ ++++ +++G + A + + + + + + AL+ G + +D A RQL
Sbjct: 166 IHTSLINMYAQSGEMNNA-QLVFDQSNFRDAISFTALIAGYALWGYMDRA----RQLFDE 220
Query: 179 DPLNN--GYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSIT 224
P+ + ++ +++ YA+ R ++ + + MR V P S+I
Sbjct: 221 MPVKDVVSWNAMIAG-YAQMGRSKEALLLFEDMRKANV--PPNESTIV 265
>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 678
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 183/352 (51%), Positives = 251/352 (71%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+HEY + + N+ + N LIDMY KCGCLE AR VF +M+ R V +W++MI ++G
Sbjct: 327 RIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNG 386
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ ++A++ F++M ++G+ P+ + F+ +L AC H G +DEGR +F MT E I+P+IEH+
Sbjct: 387 KGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHF 446
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG + EAY FI+ MP++PN VWGALL CRV+ N+ + A+ QL QL P
Sbjct: 447 VCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCP 506
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+GY+V+LSNIYA+A RWEDV VR +M+ G+KK PG S+ +D VH F+AGD++HP
Sbjct: 507 EQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHP 566
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q+++I++ + + MK GY+P T L D+EE++KE L HSEKLA+ F ++NT PG
Sbjct: 567 QSKQIYEELDVSVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPG 626
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+PIRI KNLRVC DCH A KLIS+IV REI +RD NRFH F G CSCGDYW
Sbjct: 627 SPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 678
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G N+ V N LI MY KCGCL A RV +M R V +W++++ G A +G
Sbjct: 158 QIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNG 217
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90
Q +AL +M +G+KP+ T LL A
Sbjct: 218 QFDDALEVCKEMELLGLKPDAGTMASLLPA 247
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 78/166 (46%), Gaps = 7/166 (4%)
Query: 30 CLEGA---RRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIG 86
CL+ + +F+++ +++ +W+ MI + EA+ F +M + + P+ ++
Sbjct: 252 CLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIAS 311
Query: 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIK 146
+L ACG + + GRR + + P + ++D+ ++ G L+ A E M +
Sbjct: 312 VLPACGDLSALLLGRR-IHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFR 370
Query: 147 PNGVVWGALLGGCRVH-KNIDLAEEASRQLDQ-LDPLNNGYHVVLS 190
+ V W +++ ++ K D SR D L+P + + VLS
Sbjct: 371 -DVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLS 415
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 2/158 (1%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
L+ Y CG R +F E+ ++ V ++ MI+ + +AL F M GI P+
Sbjct: 77 LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 136
Query: 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFI 140
T+ +L A + G + ++ G+ + ++ + + G L EA +
Sbjct: 137 HYTYPCVLKASSGSEDLWVGMQI-HAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVL 195
Query: 141 RNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
MP + + V W +L+ GC + D A E ++++ L
Sbjct: 196 DQMPCR-DVVSWNSLVAGCARNGQFDDALEVCKEMELL 232
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 183/346 (52%), Positives = 244/346 (70%)
Query: 7 NQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEAL 66
+++ F N + LIDMY KCG ++ A VF M ++ + W+A I GLA+ G K A
Sbjct: 274 DRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAF 333
Query: 67 TSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126
F +M + GI+P+G TF+GLL AC H G VDEGR++F SM + + P+IEHYGCMVDL
Sbjct: 334 GLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDL 393
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYH 186
L RAGFL EA++ +++MP++ N +VWGALLGGCR+H++ L E +QL L+P N+G +
Sbjct: 394 LGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIALEPSNSGNY 453
Query: 187 VVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIF 246
V+LSNIY+ + +WED A++R +M G+KK PG+S I VDGVVHEF+ GD +HP +EKI+
Sbjct: 454 VLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFLVGDTSHPLSEKIY 513
Query: 247 QMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIM 306
+L+ +K GY+P T VL DIEE+EKE F+ HSEKLA+ FGL++T P IR++
Sbjct: 514 AKLGELVKDLKASGYVPTTDYVLFDIEEEEKEHFIGCHSEKLAIAFGLISTAPNDKIRVV 573
Query: 307 KNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
KNLRVC DCH A K IS REI+VRD NRFHCF GSCSC DYW
Sbjct: 574 KNLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFNDGSCSCKDYW 619
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 12/171 (7%)
Query: 18 CNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGI 77
C IDM+ + A VF M E+ + +WS+MIQG A +G KEAL F KM+ G
Sbjct: 190 CREAIDMFRR------ACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGF 243
Query: 78 KPNGVTFIGLLHACGHMGWVDEGRRFFYSMT-TEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
+P+ +G+L AC +G ++ G M E+ P + ++D+ ++ G + A
Sbjct: 244 RPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLG--TALIDMYAKCGRMDSA 301
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ--LDPLNNGY 185
+E R M K + VVW A + G + ++ A Q+++ ++P N +
Sbjct: 302 WEVFRGMR-KKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTF 351
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 10/183 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + G + + N ++ G + R+F + +E +F ++ MI GL ++
Sbjct: 29 VHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDS 88
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+E++ ++ M + G+ P+ TF LL AC + G + + + + G
Sbjct: 89 FQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIK-LHGLVVKAGCESDAFVNT 147
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG------CRVHKNIDLAEEASRQL 175
+V L + GF+ A++ ++P K N W A++ G CR + ID+ A
Sbjct: 148 SLVSLYGKCGFIDNAFKVFDDIPEK-NVAAWTAIISGYIGVGKCR--EAIDMFRRACSVF 204
Query: 176 DQL 178
D +
Sbjct: 205 DGM 207
>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 705
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 177/351 (50%), Positives = 257/351 (73%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+ Y + R++ +CN LIDM+ KCG ++ A +VF EM+ RT+ +W++MI GLA+HG+
Sbjct: 355 LESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGR 414
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ F++M+E G+ P+ V FIG+L AC H G VD+G +F +M + I+P+IEHYG
Sbjct: 415 GLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYG 474
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+LSRAG + EA EF+R MP++PN V+W +++ C + L E +++L + +P
Sbjct: 475 CMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESVAKELIRREPS 534
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ +V+LSNIYA+ RWE +VR++M G++K PG + I ++ ++EFVAGD++H Q
Sbjct: 535 HESNYVLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMNNEIYEFVAGDKSHDQ 594
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I++M E++ +K GY+P TS VLLDI+E++KE LYRHSEKLA+ F L++TPPGT
Sbjct: 595 YKEIYEMVEEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLSTPPGT 654
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVCEDCH+A K IS++ NREIVVRDRNRFH F+ G CSCGD+W
Sbjct: 655 PIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCGDFW 705
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 85/167 (50%), Gaps = 9/167 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEG------ARRVFIEMEERTVFTWSAMIQG 55
VH + GF + V NTL+ MY C C +G A++VF E + TWSAMI G
Sbjct: 249 VHASMVKFGFEEDPHVRNTLVHMYC-CCCQDGSSGPVSAKKVFDESPVKDSVTWSAMIGG 307
Query: 56 LAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP 115
A G + A+T F +M G+ P+ +T + +L AC +G ++ G ++ S I+
Sbjct: 308 YARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELG-KWLESYIERKNIMR 366
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+E ++D+ ++ G + A + R M ++ V W +++ G +H
Sbjct: 367 SVELCNALIDMFAKCGDVDRAVKVFREMKVR-TIVSWTSMIVGLAMH 412
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 183/351 (52%), Positives = 248/351 (70%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + ++ + L+DMY KCG +E A RVF EM E+ V TW+A+I GLA+ GQ
Sbjct: 361 LHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQ 420
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+AL F++M +KP+ +TF+G+L AC H G V+EG +F SM +YGI P IEHYG
Sbjct: 421 GLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYG 480
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+L RAG + EA + I+NMP+ P+ V LL CR+H N+ +AE A++QL +LDP
Sbjct: 481 CMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPK 540
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V+LSNIY+ + WE ++R+LM +KK PG S+I V GVVHEFV GD +HPQ
Sbjct: 541 NGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQ 600
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ +I++ + ++ +K GY+P+ S VL D++EKEKE L HSEKLA+ FGL++T PGT
Sbjct: 601 SSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGT 660
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR++KNLRVC DCH+A K ISE+ NREI+VRDRNRFH F GSCSC D+W
Sbjct: 661 PIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 711
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 87/158 (55%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH+Y +++G + + + L+D+Y KCGC AR +F +M E+ +F W+ MI G
Sbjct: 259 QVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDS 318
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL+ FN+M G+K + VT LL AC H+G ++ G+ + E I +
Sbjct: 319 DYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKE-KIEVDVALG 377
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ ++ G ++ A + MP K + + W AL+ G
Sbjct: 378 TALVDMYAKCGSIESAMRVFQEMPEK-DVMTWTALIVG 414
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +S + GF + + NTL++MY CGCL AR+VF +M ++V +W+ MI A
Sbjct: 158 QLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWD 217
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA+ F +M +KPN +T + +L AC ++ ++ + E GI
Sbjct: 218 LPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQ-VHKYIDETGIGFHTVLT 276
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ + G A + MP K N W ++ G
Sbjct: 277 SALMDVYCKCGCYPLARDLFNKMPEK-NLFCWNIMING 313
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 102/238 (42%), Gaps = 23/238 (9%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88
G L AR VF ++ T FT +++I+G ++A+ + M+ G+ P+ TF L
Sbjct: 88 GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLF 147
Query: 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPN 148
+CG + EG++ + +T+ G ++++ S G L A + M + +
Sbjct: 148 KSCGVLC---EGKQ-LHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKM-VNKS 202
Query: 149 GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN-NGYHVVLSNIYAEAERWEDV---AR 204
V W ++G + DL EA + +++ + + L N+ R D+ +
Sbjct: 203 VVSWATMIGA---YAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQ 259
Query: 205 VRKLMRNLGVKKTPGWSSITVDGVVHEF-------VAGDETHPQAEKIFQMWEKLLDG 255
V K + G+ G+ ++ ++ + +A D + EK W +++G
Sbjct: 260 VHKYIDETGI----GFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMING 313
>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
Length = 575
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 171/351 (48%), Positives = 257/351 (73%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH++ +G ++++ LIDMY KCG +E + RVF M + V TWS+MI GLA HG
Sbjct: 225 VHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGF 284
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+AL+ F++M+ G++PN VTFIG+L +C H+G V +G+++F SM+ +G+ P+++HYG
Sbjct: 285 GHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYG 344
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL R+G ++EA + IR+MP +P+ V+W ALLG CR++KN+++AEEA +L LDP
Sbjct: 345 CMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPH 404
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+G++V+LSNIYA+A WE VA +R+ +R +++ PG SSI +HEF++GD +HP+
Sbjct: 405 ADGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPGRSSIEWQNTIHEFISGDRSHPR 464
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I++M +++D ++ GY P T +VL DI+E+ KE+ L HSEKLA+ FGL+ TP G+
Sbjct: 465 SKEIYKMLGEMMDRLRQAGYKPMTGLVLQDIDEQSKERALAEHSEKLAVAFGLLTTPAGS 524
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+RI KNLR CEDCH+A KLI+ + R++++RDRNRFH F G CSC DYW
Sbjct: 525 TLRITKNLRACEDCHSAIKLIALLYERKLIIRDRNRFHHFSEGRCSCKDYW 575
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 33/182 (18%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ---------- 61
RR++ +CN ++ YV G + ARRVF M ER + +W+ MI G A++G+
Sbjct: 103 RRDVFLCNVMLAAYVTRGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNG 162
Query: 62 ---------------------AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG 100
+K+AL + +M + P+ T + +L AC MG + G
Sbjct: 163 MDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVG 222
Query: 101 RRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCR 160
+ G+ ++ ++D+ ++ G ++ + +MP+K + + W +++ G
Sbjct: 223 AE-VHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVK-DVLTWSSMIIGLA 280
Query: 161 VH 162
H
Sbjct: 281 NH 282
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 188/351 (53%), Positives = 245/351 (69%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y +G + N+ V L+DMY KCG LE AR VF +++++ V W++MI G A+HG
Sbjct: 278 VHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGF 337
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++EAL F M +G+ P +TFIG+L ACGH GWV EG F M EYGI P+IEHYG
Sbjct: 338 SQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYG 397
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMV+LL RAG +++AYE ++NM I+P+ V+WG LLG CR+H I L E+ L +
Sbjct: 398 CMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLA 457
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +++LSNIYA W+ VAR+R +M++ GVKK PG SSI V+ VHEF+AG HP+
Sbjct: 458 NSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPK 517
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I+ M E++ +K GY P T +VL DI E EKE+ L HSEKLA+ FGL+NT PGT
Sbjct: 518 RKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGT 577
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I+I+KNLRVC DCH KLIS+I R+IVVRDRNRFH F GSCSCGDYW
Sbjct: 578 TIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 628
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 78/150 (52%), Gaps = 2/150 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+++ ++ Y K G L+ AR +F MEER W+ MI G +G EAL F +M
Sbjct: 188 KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM 247
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
++ KPN VT + +L ACG +G ++ G R+ +S GI + +VD+ S+ G
Sbjct: 248 LKAKAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQFNVHVGTALVDMYSKCGS 306
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
L++A + K + V W +++ G +H
Sbjct: 307 LEDARLVFDKIDDK-DVVAWNSMIVGYAMH 335
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 6/144 (4%)
Query: 25 YVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTF 84
Y G L+ + +F + +VF W+A+I G A+ G ++AL + +M+ G++PN TF
Sbjct: 72 YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 131
Query: 85 IGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP 144
+L C ++ G+ +S + G + ++D+ +R G + A + MP
Sbjct: 132 SSILKLCP----IEPGKA-LHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMP 186
Query: 145 IKPNGVVWGALLGGCRVHKNIDLA 168
K + V A+L H +D A
Sbjct: 187 EK-SLVSLTAMLTCYAKHGELDAA 209
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 180/352 (51%), Positives = 249/352 (70%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R H+Y ++G N+ + L+DMY +CG ++ A VF ++ ER +W+A+I GLA+HG
Sbjct: 272 RAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHG 331
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++ +L F M+E G+ P +TF +L AC H G V+ G + F SM ++ + P++EHY
Sbjct: 332 YSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHY 391
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLL RAG L+EA F+ MP+KPN VWGALLG CR+HKN ++ E + L QL P
Sbjct: 392 GCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLLP 451
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++GY+V+LSNIYA A+ WE V +R++M+ G+KK PG S I +DG VH+F GD +HP
Sbjct: 452 QHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIGDSSHP 511
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +KI +MWE++L ++ GY NT+ L DI+E+EKE L+RHSEKLA+ FG+M + G
Sbjct: 512 EMDKIERMWEEILMRIRAAGYRGNTADALFDIDEEEKESALHRHSEKLAIAFGMMRSEAG 571
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPIRI+KNLRVCEDCH A KLIS++ RE++VRDRNRFH F+ G CSC DYW
Sbjct: 572 TPIRIVKNLRVCEDCHTATKLISKVFGRELIVRDRNRFHHFRQGLCSCMDYW 623
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 88/193 (45%), Gaps = 33/193 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYV-------------------------------KCG 29
+ H + + GF +++ V N+L+ MY KCG
Sbjct: 140 QAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCG 199
Query: 30 CLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH 89
+E AR++F +M E+ + TWS MI G A + +A+ F + G++ N + ++
Sbjct: 200 DVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVIS 259
Query: 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNG 149
+C H+G ++ G R + + G+ + +VD+ +R G + +A ++P + +
Sbjct: 260 SCAHLGALELGER-AHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLP-ERDT 317
Query: 150 VVWGALLGGCRVH 162
+ W AL+ G +H
Sbjct: 318 LSWTALIAGLAMH 330
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/215 (18%), Positives = 92/215 (42%), Gaps = 8/215 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R H + R I C +D ++ A R+F +++ +F ++AMI+G +
Sbjct: 42 RTHIICDVFAASRLIAFC---VDPSSGTSLIDYASRIFSQIQNPNLFIFNAMIRGHSGSK 98
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A + + G+ P+ +TF L+ +C + + G + + ++G +
Sbjct: 99 NPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQ-AHGHIIKHGFEKDVYVQ 157
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+V + + G + A + M + V W +++ G ++ E A + DQ+
Sbjct: 158 NSLVHMYATFGDTEAATLIFQRM-YYVDVVSWTSMIRGFNKCGDV---ESARKLFDQMPE 213
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVK 215
N + + YA+ ++ + K++++ GV+
Sbjct: 214 KNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVR 248
>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 188/351 (53%), Positives = 245/351 (69%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y +G + N+ V L+DMY KCG LE AR VF +++++ V W++MI G A+HG
Sbjct: 212 VHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGF 271
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++EAL F M +G+ P +TFIG+L ACGH GWV EG F M EYGI P+IEHYG
Sbjct: 272 SQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYG 331
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMV+LL RAG +++AYE ++NM I+P+ V+WG LLG CR+H I L E+ L +
Sbjct: 332 CMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLA 391
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +++LSNIYA W+ VAR+R +M++ GVKK PG SSI V+ VHEF+AG HP+
Sbjct: 392 NSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPK 451
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I+ M E++ +K GY P T +VL DI E EKE+ L HSEKLA+ FGL+NT PGT
Sbjct: 452 RKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGT 511
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I+I+KNLRVC DCH KLIS+I R+IVVRDRNRFH F GSCSCGDYW
Sbjct: 512 TIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 562
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 78/150 (52%), Gaps = 2/150 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+++ ++ Y K G L+ AR +F MEER W+ MI G +G EAL F +M
Sbjct: 122 KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM 181
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
++ KPN VT + +L ACG +G ++ G R+ +S GI + +VD+ S+ G
Sbjct: 182 LKAKAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQFNVHVGTALVDMYSKCGS 240
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
L++A + K + V W +++ G +H
Sbjct: 241 LEDARLVFDKIDDK-DVVAWNSMIVGYAMH 269
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 86/217 (39%), Gaps = 26/217 (11%)
Query: 25 YVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTF 84
Y G L+ + +F + +VF W+A+I G A+ G A F+ M E + V+
Sbjct: 72 YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGDVVSAQQLFDTMPEKSL----VSL 127
Query: 85 IGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM- 143
+L G +D R F M G+ + M+D ++ G EA R M
Sbjct: 128 TAMLTCYAKHGELDAARVLFDGMEERDGVC-----WNVMIDGYTQNGMPNEALVLFRRML 182
Query: 144 --PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNG----YHV--VLSNIYAE 195
KPN V ++L C ++ ++ NNG HV L ++Y++
Sbjct: 183 KAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIE-----NNGIQFNVHVGTALVDMYSK 237
Query: 196 AERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEF 232
ED R + + K W+S+ V +H F
Sbjct: 238 CGSLED---ARLVFDKIDDKDVVAWNSMIVGYAMHGF 271
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 183/351 (52%), Positives = 248/351 (70%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + ++ + L+DMY KCG +E A RVF EM E+ V TW+A+I GLA+ GQ
Sbjct: 230 LHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQ 289
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+AL F++M +KP+ +TF+G+L AC H G V+EG +F SM +YGI P IEHYG
Sbjct: 290 GLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYG 349
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+L RAG + EA + I+NMP+ P+ V LL CR+H N+ +AE A++QL +LDP
Sbjct: 350 CMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPK 409
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V+LSNIY+ + WE ++R+LM +KK PG S+I V GVVHEFV GD +HPQ
Sbjct: 410 NGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQ 469
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ +I++ + ++ +K GY+P+ S VL D++EKEKE L HSEKLA+ FGL++T PGT
Sbjct: 470 SSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGT 529
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR++KNLRVC DCH+A K ISE+ NREI+VRDRNRFH F GSCSC D+W
Sbjct: 530 PIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 580
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 34/190 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLA--- 57
++H +S + GF + + NTL++MY CGCL AR+VF +M ++V +W+ MI A
Sbjct: 96 QLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWD 155
Query: 58 ------------------------IHGQAK-----EALTSFNKMIEIGIKPNGVTFIGLL 88
I+G + EAL+ FN+M G+K + VT LL
Sbjct: 156 LPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLL 215
Query: 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPN 148
AC H+G ++ G+ + E I + +VD+ ++ G ++ A + MP K +
Sbjct: 216 IACTHLGALELGKWLHVYIEKE-KIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEK-D 273
Query: 149 GVVWGALLGG 158
+ W AL+ G
Sbjct: 274 VMTWTALIVG 283
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 87/188 (46%), Gaps = 9/188 (4%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88
G L AR VF ++ T FT +++I+G ++A+ + M+ G+ P+ TF L
Sbjct: 26 GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLF 85
Query: 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPN 148
+CG + EG++ + +T+ G ++++ S G L A + M + +
Sbjct: 86 KSCGVLC---EGKQ-LHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKM-VNKS 140
Query: 149 GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYH-VVLSNIYAEAERWEDVARVRK 207
V W ++G + DL EA + +++ +N + ++ N + E +E+ +
Sbjct: 141 VVSWATMIGA---YAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFN 197
Query: 208 LMRNLGVK 215
M+ GVK
Sbjct: 198 EMQLSGVK 205
>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 600
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 173/351 (49%), Positives = 257/351 (73%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V Y + +++ +CN LIDM+ KCG ++ A ++F +M+ RT+ +W+++I GLA+HG+
Sbjct: 250 VESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGR 309
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+A++ F++M+E GI P+ V FIG+L AC H G VD+GR +F SM + I+P++EHYG
Sbjct: 310 GLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYG 369
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL R GF++EA+EF++ MP +PN ++W ++ C + L E S++L + +P+
Sbjct: 370 CMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELIKSEPM 429
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ +V+LSNIYA+ +WE +VR++M G+KK PG + I V+ ++EFVAGD++H Q
Sbjct: 430 HESNYVLLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGDKSHDQ 489
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I++M +++ +K GY+P TS VLLDI+E++KE LYRHSEKLA+ F L+NTPPGT
Sbjct: 490 YKEIYEMVDEMGREIKKAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLNTPPGT 549
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVCEDCH+A K IS++ NREIVVRDRNRFH F+ G CSC D+W
Sbjct: 550 SIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW 600
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 4/163 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCG--CLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
VH + GF ++ V NTLI MY G E A +VF + + TWSAMI G
Sbjct: 147 VHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRL 206
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G + A+ F +M +G+ P+ +T + +L AC +G ++ G ++ S + I +E
Sbjct: 207 GCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELG-KWVESYVEKKNIPKSVEL 265
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++ G + +A + R M + V W +++ G +H
Sbjct: 266 CNALIDMFAKCGNVDKAIKLFRQMDSR-TIVSWTSVIAGLAMH 307
>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 179/351 (50%), Positives = 259/351 (73%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ + G+ N+ + ++IDMY KCG E AR F M+E+ V +W+AMI G +HG
Sbjct: 316 LHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGF 375
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+EAL F +MI G+KPN +TFI +L AC H G+++EG R+F +M+ EY + P +EHYG
Sbjct: 376 AREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYG 435
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG+++EAY I++M ++ + V+WG+LL CR+HK+++LAE ++R+L +LDP
Sbjct: 436 CMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPS 495
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+V+L+NIYA+A RW+DV R+R L+++ G+ K PG+S + + G VH F+ GD+ HPQ
Sbjct: 496 NCGYYVLLANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQ 555
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
EKI++ E+L ++ GY+PN + VL D++E+EKE + HSEKLA+ FG+MN+ PG+
Sbjct: 556 HEKIYKYLEELSVKLQEAGYVPNMASVLHDVDEEEKEMIVRVHSEKLAVAFGVMNSIPGS 615
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I ++KNLRVC DCH KLIS+IV+REI+VRD RFH F+ G CSCGDYW
Sbjct: 616 TIHVIKNLRVCGDCHTVIKLISKIVSREIIVRDAKRFHHFKDGLCSCGDYW 666
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 3/162 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + G + + V NTL+D Y KCG + +R+VF +M E+ V +W++MI A +G
Sbjct: 214 VHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGL 273
Query: 62 AKEALTSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +A F+ M++ G K N VT LL AC H G + G + + G + +
Sbjct: 274 STDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVG-MCLHDQVIKMGYVNNVIMA 332
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ + G + A M K N W A++ G +H
Sbjct: 333 TSIIDMYCKCGQAEMARNAFDGMKEK-NVRSWTAMIAGYGMH 373
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 15/168 (8%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H+ + GF ++ V + LIDMY KCG L AR +F E+ R + TW+++I G +
Sbjct: 103 QAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQND 162
Query: 61 QAKEALTSFNKMI---------EIGIKPNGVTFIGLLHACGHMG--WVDEGRRFFYSMTT 109
A EAL F + + E+G + V I +L AC + V EG + +
Sbjct: 163 DAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEG---VHGVAI 219
Query: 110 EYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
+ G+ + ++D ++ G + + + +M K + V W +++
Sbjct: 220 KVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEK-DVVSWNSMIA 266
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 37 VFIEMEERT-VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMG 95
+F + +RT V++W+++I LA G + E+L +F+ M ++ IKPN TF + +C +
Sbjct: 37 LFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALF 96
Query: 96 WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGAL 155
++ G++ + +G + ++D+ S+ G L A +P + N V W +L
Sbjct: 97 DLNSGKQ-AHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIP-RRNIVTWTSL 154
Query: 156 LGG 158
+ G
Sbjct: 155 ITG 157
>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 183/352 (51%), Positives = 249/352 (70%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+HEY ++G + ++V LIDMY KCG L+GA VF M R WSAMI A+HGQ
Sbjct: 250 IHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQ 309
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++ ++ F +M ++P+ +TF+GLL+AC H G VDEG R+FYSM+ YGIIP I+HYG
Sbjct: 310 GQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYG 369
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L EAY+FI +PIKP ++W LL C H N++LA++ Q+ +LD
Sbjct: 370 CMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDS 429
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G +V+LSN+ A A +WEDV +RKLM + G K PG SSI VD VVHEF +GD H
Sbjct: 430 HGGDYVILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGDGVHYV 489
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVL-LDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ + + ++L+ +K GY+P+TS+V+ D+E++EKE L HSEKLA++FGL+NTPPG
Sbjct: 490 STALHRALDELVKELKSVGYVPDTSLVVHPDMEDEEKEITLRYHSEKLAISFGLLNTPPG 549
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IR++KNLRVC DCH+A KLIS +++REI++RD RFH F+ G CSCGDYW
Sbjct: 550 TTIRVVKNLRVCGDCHSAAKLISSLIDREIILRDVQRFHHFKDGKCSCGDYW 601
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 96/183 (52%), Gaps = 6/183 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G N VC TLI+MY C ++GA+RVF E+ E V +++A+I G A
Sbjct: 148 QLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGYARSS 207
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EAL+ F ++ +KPN VT + +L +C +G +D G ++ + + G+ ++
Sbjct: 208 RPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLG-KWIHEYVKKNGLDKYVKVN 266
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKN----IDLAEEASRQLD 176
++D+ ++ G L A +M ++ + W A++ +H + + EE +R
Sbjct: 267 TALIDMYAKCGSLDGAISVFESMSVR-DTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKV 325
Query: 177 QLD 179
Q D
Sbjct: 326 QPD 328
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 184/351 (52%), Positives = 249/351 (70%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ + N+ V ++IDMY KCG +E A++ F M+E+ V +W+AM+ G +HG+
Sbjct: 2248 IHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGR 2307
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AKEAL F KM+ G+KPN +TF+ +L AC H G V+EG +F +M +Y I P IEHYG
Sbjct: 2308 AKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYG 2367
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL RAG L EAY I+ M +KP+ VVWG+LLG CR+HKN+DL E A+++L +LDP
Sbjct: 2368 CMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPD 2427
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+V+LSN+YA+A RW DV R+R LM+N + K PG+S + + G VH F+ GD+ HP
Sbjct: 2428 NCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPH 2487
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E I++ EKL ++ GY+PN + VL D++E+EKE L HSEKLA+ FG+MN+ PGT
Sbjct: 2488 HEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGT 2547
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I I+KNLRVC DCH KLIS++V+R+ VVRD RFH F+ G CSCGDYW
Sbjct: 2548 TINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 2598
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 86/137 (62%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+Y+ ++ + + LIDMY KCG ++ A VF M +++ TW++MI L +HG
Sbjct: 279 IHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGL 338
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL F++M + +KP+ +TFIG+L AC H+ V EG +F MT YGI P EHY
Sbjct: 339 GQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYE 398
Query: 122 CMVDLLSRAGFLQEAYE 138
CM +L +R+ L EA++
Sbjct: 399 CMTELYARSNNLDEAFK 415
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 13/174 (7%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ T+I + CG L+ ARR+F E+ + V +W+AMI G + Q +EAL F +M
Sbjct: 189 RNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRM 248
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE---HYG-CMVDLLS 128
I PN T + L+ AC MG + GR +Y I IE + G ++D+ S
Sbjct: 249 QAENIFPNEYTMVSLIKACTEMGILTLGRGIH-----DYAIKNCIEIGVYLGTALIDMYS 303
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182
+ G +++A E MP K + W +++ VH L +EA +++ +N
Sbjct: 304 KCGSIKDAIEVFETMPRK-SLPTWNSMITSLGVH---GLGQEALNLFSEMERVN 353
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 9/165 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + GF +I V NTL+D Y KCG +++VF MEE+ +W++MI A G
Sbjct: 2146 VHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGL 2205
Query: 62 AKEALTSFNKMIE-IGIKPNGVTFIGLLHACGHMGWVDEGRRF---FYSMTTEYGIIPQI 117
+ EAL F+ M+ +G++ N VT +L AC H G + G+ M EY +
Sbjct: 2206 SGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGT 2265
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ + G ++ A + M K N W A++ G +H
Sbjct: 2266 S----IIDMYCKCGRVEMAKKTFDRMKEK-NVKSWTAMVAGYGMH 2305
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 129/313 (41%), Gaps = 63/313 (20%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H+ + GF ++ V + LIDMY KCG L+ AR +F E+ R V +W++MI G + QA
Sbjct: 2038 HQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQA 2097
Query: 63 KEALTSFNKMIE--------IGIKPNGVTFIGLLHACGHMG--WVDEGRRFFYSMTTEYG 112
AL F +E + + V + +L AC + + EG F G
Sbjct: 2098 DNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDG 2157
Query: 113 II---------------PQIEH-------------YGCMVDLLSRAGFLQEAYE----FI 140
I P + + M+ + +++G EA E +
Sbjct: 2158 SIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMV 2217
Query: 141 RNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL-DQLDPLNNGYHVVLS----NIYAE 195
R++ ++ N V A+L C H A A + + DQ+ ++ Y+V + ++Y +
Sbjct: 2218 RHVGVRYNAVTLSAVLLAC-AHAG---ALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCK 2273
Query: 196 AERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDG 255
R E + M+ VK W+++ VAG H +A++ ++ K++
Sbjct: 2274 CGRVEMAKKTFDRMKEKNVK---SWTAM---------VAGYGMHGRAKEALDIFYKMVRA 2321
Query: 256 MKLKGYIPNTSVV 268
YI SV+
Sbjct: 2322 GVKPNYITFVSVL 2334
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 96/210 (45%), Gaps = 5/210 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SG + + LI +Y G + A +F +++ FTW+ +I+ I+G
Sbjct: 45 QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTING 104
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+++AL + M+ GI + TF ++ AC + +D G+ S+ +YG +
Sbjct: 105 LSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSL-IKYGFSGDVFVQ 163
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
++D + G + A + M ++ N V W ++ G ++ +EA R D++
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKMRVR-NVVSWTTVISGLISCGDL---QEARRIFDEIPS 219
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMR 210
N + N Y ++ E+ + K M+
Sbjct: 220 KNVVSWTAMINGYIRNQQPEEALELFKRMQ 249
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 41 MEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG 100
+++ V +W+++I LA G + EAL +F+ + ++G+ P +F + +C + + G
Sbjct: 1975 VDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSG 2034
Query: 101 RRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
R + +G + ++D+ S+ G L++A +P++ N V W +++ G
Sbjct: 2035 -RMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLR-NVVSWTSMITG 2090
>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
Length = 746
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/354 (52%), Positives = 248/354 (70%), Gaps = 2/354 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H S ++G ++ V LID+Y KCG L A +F M R+ W+A+I GL +HG
Sbjct: 393 RMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHG 452
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+AL+ F++M + IKP+ VTF+ LL AC H G VD+GR FF M T YGI+P +HY
Sbjct: 453 HGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHY 512
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVD+L RAG L EA+EFI++MPIKP+ VWGALLG CR+H N+++ + AS+ L +LDP
Sbjct: 513 TCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDP 572
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET-- 238
N GY+V++SN+YA+ +W+ V VR L+R ++KTPGWSS+ V G V F +G +T
Sbjct: 573 ENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVFYSGTQTEP 632
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
HPQ E+I + LL MK GY+P+ S VL D+EE EKE+ L HSE+LA+ FG++NTP
Sbjct: 633 HPQHEEIQRGLHDLLAKMKSAGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTP 692
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PGTP+ I KNLRVC DCH+A K IS+I REI+VRD NRFH F+ G CSCGD+W
Sbjct: 693 PGTPLHIYKNLRVCGDCHSATKYISKITEREIIVRDANRFHHFKDGHCSCGDFW 746
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 94/178 (52%), Gaps = 4/178 (2%)
Query: 2 VHEYSNQSGFR-RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
VH Y + G+ +I N ++DMY K ++ A++VF + +R V +W+ +I G +G
Sbjct: 291 VHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNG 350
Query: 61 QAKEALTSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
A EA+ +N M G+KP TF+ +L A ++G + +G R ++++ + G+ +
Sbjct: 351 LANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMR-MHALSIKTGLNLDVYV 409
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
C++DL ++ G L EA +MP + G W A++ G VH + A Q+ Q
Sbjct: 410 TTCLIDLYAKCGKLVEAMFLFEHMPRRSTG-PWNAIIAGLGVHGHGAKALSLFSQMQQ 466
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 8/174 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ + G + VCN LID+Y K G L A VF M R + TW+++I G+
Sbjct: 190 MHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGK 249
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDE-GRRFFYSMTTEYG-IIPQIEH 119
A+ F+ M+E G+ P+ +T + L A G DE G + + G + I
Sbjct: 250 VAAAVELFHGMMESGVCPDVLTLVSLASAVAQCG--DELGAKSVHCYVRRRGWDVGDIIA 307
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR 173
MVD+ ++ + A + N+P + + V W L+ G + LA EA R
Sbjct: 308 GNAMVDMYAKMSKIDAAQKVFDNLPDR-DVVSWNTLITG---YMQNGLANEAIR 357
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 4/144 (2%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N+ +L+ Y++ G + A RVF EM ER V W+AM+ GL + +A +A+T +M+
Sbjct: 101 NVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMV 160
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRF-FYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
G+ + VT +L C +G D + ++G+ ++ ++D+ + G
Sbjct: 161 GEGVAGDAVTLSSVLPMCVVLG--DRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGM 218
Query: 133 LQEAYEFIRNMPIKPNGVVWGALL 156
L EA+ M ++ + V W +++
Sbjct: 219 LTEAHWVFGGMALR-DLVTWNSII 241
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/351 (54%), Positives = 249/351 (70%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y ++G + NI + TLI+MY+K GC+E A VF +EE+ V TW+A+I GLA++G
Sbjct: 443 IHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGL 502
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++L +F++M E G+ PN +TF+ +L AC HMG VDEG R F SM E+ I P I+HYG
Sbjct: 503 VDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYG 562
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L+EA E I +MP+ P+ WGALLG C+ + + + E R+L +L P
Sbjct: 563 CMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPD 622
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G++V+LSNIYA W DV VR +MR GV KTPG S I G VHEF+AGD+THPQ
Sbjct: 623 HDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQ 682
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E I M +++ +KL+GY P+T V LDI+E+EKE L+RHSEKLA+ FGL+ P T
Sbjct: 683 NEHIEHMLDEMAKKLKLEGYAPDTREVSLDIDEEEKETTLFRHSEKLAIAFGLIAIDPPT 742
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLR+C DCH A KLIS+ NREIVVRDR+RFH F+ GSCSC DYW
Sbjct: 743 PIRIVKNLRICNDCHTAAKLISKAFNREIVVRDRHRFHHFKQGSCSCMDYW 793
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 80/149 (53%), Gaps = 4/149 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N++I YVKCG +E AR +F M ++ +WSAMI G A + E L F +M G K
Sbjct: 359 NSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTK 418
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ + ++ AC H+ +D+G ++ ++ + G+ I ++++ + G +++A E
Sbjct: 419 PDETILVSVISACTHLAALDQG-KWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALE 477
Query: 139 FIRNMPIKPNGV-VWGALLGGCRVHKNID 166
+ + K GV W AL+ G ++ +D
Sbjct: 478 VFKGLEEK--GVSTWNALILGLAMNGLVD 504
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 31/176 (17%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ N++I ++ K G +E A ++F EM+++ + +WSA+I + +EAL F +M
Sbjct: 221 RNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEM 280
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRF---------------------FYSMTTEY 111
GI + V + +L AC + V G+ YS E
Sbjct: 281 NANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEV 340
Query: 112 GIIPQIEHYGCMVDLLS---------RAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ C +D +S + G +++A +MP K N V W A++ G
Sbjct: 341 VTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDN-VSWSAMISG 395
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+ ++ + GF ++ + NTLI+MY CG L AR+VF + +W++M+ G + G
Sbjct: 148 IQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGN 207
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM 107
+EA +++M E N + ++ G G V+E + F M
Sbjct: 208 VEEAKDVYDRMPE----RNVIASNSMIVLFGKKGNVEEACKLFNEM 249
>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust.
Identities = 177/351 (50%), Positives = 253/351 (72%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V Y + ++N+ + N LIDM+ KCG ++ A +F M ER + +W+++I GLA+HG+
Sbjct: 137 VESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGR 196
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ F +M+ G+ P+ V FIGLL AC H G VD+G+R+F SM ++ I+P+IEHYG
Sbjct: 197 GVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYG 256
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+L RAG ++EA +F++ MPI PN VVW L+ CR H + L E+ +RQL + +P+
Sbjct: 257 CMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQLIRNEPM 316
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ +V+LSNIYA+ WE R+R+ M G+KK PG + I +D ++EFVAGD++H Q
Sbjct: 317 HESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMIELDNEIYEFVAGDKSHAQ 376
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I++M +++ MK GY+P T+ VLLDI++++KE L RHSEKLA+ F L+NTPPGT
Sbjct: 377 SKEIYEMVDEMGKEMKRAGYMPTTTEVLLDIDDEDKEDTLNRHSEKLAIAFALLNTPPGT 436
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC+DCH+A K IS+I NREIVVRDRNRFH F+ G CSC D+W
Sbjct: 437 LIRIVKNLRVCDDCHSASKFISKIYNREIVVRDRNRFHHFKNGLCSCRDFW 487
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 88/165 (53%), Gaps = 6/165 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKC----GCLEGARRVFIEMEERTVFTWSAMIQGLA 57
VH + GF + V NTL+ MY C G +E AR+VF EM + +WSAMI G
Sbjct: 32 VHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEFARKVFDEMYKSDSVSWSAMIGGYV 91
Query: 58 IHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
G++ +A+ F +M G+ P+ +T + +L AC +G ++ G ++ S + + +
Sbjct: 92 RVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGLGALELG-KWVESYVEKERVQKNV 150
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
E ++D+ ++ G + +A R+M + N V W +++GG +H
Sbjct: 151 ELSNALIDMFAKCGDVDKATNLFRSMR-ERNIVSWTSVIGGLAMH 194
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 183/352 (51%), Positives = 249/352 (70%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y ++G + N V + LI MY KCG LE AR VF +E+R VF WSAMI GLA+HG
Sbjct: 389 IHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGC 448
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ F KM E +KPNGVTF + AC H G VDE FY M + YGI+P+ +HY
Sbjct: 449 GSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYA 508
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VD+L R+G+L++A +FI MPI P+ VWGALLG C++H N+ LAE A +L +L+P
Sbjct: 509 CIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEPR 568
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G HV+LSNIYA++ +W++V+ +RK MR G+KK PG SSI +DG++HEF++GD HP
Sbjct: 569 NDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPM 628
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKE-KEKFLYRHSEKLALTFGLMNTPPG 300
+EK++ ++++ +K GY P S VL IEE+E KE+ L HSEKLA+ +GL++T
Sbjct: 629 SEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAP 688
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR++KNLR+C DCHA KLIS++ NREI+VRDR RFH F+ G CSC D+W
Sbjct: 689 KAIRVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYRFHHFRNGQCSCNDFW 740
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 2/178 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + +S ++ V N+LI Y CG L+ A +VF ++E+ V +W++MI G G
Sbjct: 155 LHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGS 214
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+AL F KM +K + VT +G+L AC + ++ GRR S E + +
Sbjct: 215 PDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVC-SYIEENRVNVNLTLAN 273
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
M+D+ ++ G +++A M K N V W +L G + ++ + A E + + D
Sbjct: 274 AMLDMYTKCGSIEDAKRLFDAMEEKDN-VTWTTMLDGYAISEDYEAAREVLNAMPKKD 330
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 106/225 (47%), Gaps = 36/225 (16%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAI-- 58
RV Y ++ N+ + N ++DMY KCG +E A+R+F MEE+ TW+ M+ G AI
Sbjct: 255 RVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISE 314
Query: 59 -----------------------------HGQAKEALTSFNKM-IEIGIKPNGVTFIGLL 88
+G+ EAL F+++ ++ IK N +T + L
Sbjct: 315 DYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTL 374
Query: 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPN 148
AC +G ++ G R+ +S + GI ++ + S+ G L++A E ++ K +
Sbjct: 375 SACAQVGALELG-RWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVE-KRD 432
Query: 149 GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIY 193
VW A++GG +H A + ++ + + NG V +N++
Sbjct: 433 VFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNG--VTFTNVF 475
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/351 (53%), Positives = 243/351 (69%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+ Y + R +R+ LIDMY KCG +E A VF +M+E+ V WSAMI GLAI+GQ
Sbjct: 290 IERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQ 349
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K+AL F++M G+KPN VTFIG+L+AC H VDEG FF+SMT+ YG+ P H+
Sbjct: 350 GKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHC 409
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL RAG L +A I++MP KPN +WGALL CR+H + +L E+ ++L +LDP
Sbjct: 410 CMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELDPN 469
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G +V+LSNIYA RW+ VA +R++MR V KTPG S I + +HEFVAGD +HPQ
Sbjct: 470 HGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDTIHEFVAGDSSHPQ 529
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E I+ ++ +K GY P+T VLLD++E+EKE L HSEKLA+ FGL+ T PGT
Sbjct: 530 LEMIYAKLGEMSQELKAAGYKPDTGQVLLDMDEEEKETALCHHSEKLAIAFGLIKTDPGT 589
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI KNLRVC DCH+A KLIS+I NREI+VRDR RFH F+ GSCSC D+W
Sbjct: 590 TIRITKNLRVCADCHSATKLISKIYNREIIVRDRCRFHHFRDGSCSCMDFW 640
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N +I Y+KCG + ARR+F M +R V +WS MI G + KE L F M+ I+
Sbjct: 206 NIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIE 265
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
PN + L AC H+G +++G+ M + + + ++D+ S+ G ++ A E
Sbjct: 266 PNESVLVNALSACAHLGAMEQGQWIERYMERK-NVRLTVRLGTALIDMYSKCGSVERALE 324
Query: 139 FIRNMPIKPNGVVWGALLGGCRVH 162
M K N + W A++ G ++
Sbjct: 325 VFHKMKEK-NVLAWSAMINGLAIN 347
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/351 (52%), Positives = 249/351 (70%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ + N+ V ++IDMY KCG +E A++ F M+E+ V +W+AM+ G +HG+
Sbjct: 1375 IHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGR 1434
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AKEAL F KM+ G+KPN +TF+ +L AC H G V+EG +F +M +Y I P IEHYG
Sbjct: 1435 AKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYG 1494
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL RAG L EAY I+ M +KP+ VVWG+LLG CR+HKN+DL E A+++L +LDP
Sbjct: 1495 CMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPD 1554
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+V+LSN+YA+A RW DV R+R LM+N + K PG+S + + G VH F+ GD+ HP
Sbjct: 1555 NCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPH 1614
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E I++ EKL ++ GY+PN + VL D++E+EKE L HSEKLA+ FG+MN+ PGT
Sbjct: 1615 HEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGT 1674
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I I+KNLRVC DCH KLIS++V+R+ VVRD RFH F+ G CSCGDYW
Sbjct: 1675 TINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 1725
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 86/137 (62%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+Y+ ++ + + LIDMY KCG ++ A VF M +++ TW++MI L +HG
Sbjct: 279 IHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGL 338
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL F++M + +KP+ +TFIG+L AC H+ V EG +F MT YGI P EHY
Sbjct: 339 GQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYE 398
Query: 122 CMVDLLSRAGFLQEAYE 138
CM +L +R+ L EA++
Sbjct: 399 CMTELYARSNNLDEAFK 415
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 13/174 (7%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ T+I + CG L+ ARR+F E+ + V +W+AMI G + Q +EAL F +M
Sbjct: 189 RNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRM 248
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE---HYG-CMVDLLS 128
I PN T + L+ AC MG + GR +Y I IE + G ++D+ S
Sbjct: 249 QAENIFPNEYTMVSLIKACTEMGILTLGRGIH-----DYAIKNCIEIGVYLGTALIDMYS 303
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182
+ G +++A E MP K + W +++ VH L +EA +++ +N
Sbjct: 304 KCGSIKDAIEVFETMPRK-SLPTWNSMITSLGVH---GLGQEALNLFSEMERVN 353
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 9/165 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + GF +I V NTL+D Y KCG +++VF MEE+ +W++MI A G
Sbjct: 1273 VHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGL 1332
Query: 62 AKEALTSFNKMIE-IGIKPNGVTFIGLLHACGHMGWVDEGRRF---FYSMTTEYGIIPQI 117
+ EAL F+ M+ +G++ N VT +L AC H G + G+ M EY +
Sbjct: 1333 SGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGT 1392
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ + G ++ A + M K N W A++ G +H
Sbjct: 1393 S----IIDMYCKCGRVEMAKKTFDRMKEK-NVKSWTAMVAGYGMH 1432
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 129/313 (41%), Gaps = 63/313 (20%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H+ + GF ++ V + LIDMY KCG L+ AR +F E+ R V +W++MI G + QA
Sbjct: 1165 HQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQA 1224
Query: 63 KEALTSFNKMIE--------IGIKPNGVTFIGLLHACGHMG--WVDEGRRFFYSMTTEYG 112
AL F +E + + V + +L AC + + EG F G
Sbjct: 1225 DNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDG 1284
Query: 113 II---------------PQIE-------------HYGCMVDLLSRAGFLQEAYE----FI 140
I P + + M+ + +++G EA E +
Sbjct: 1285 SIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMV 1344
Query: 141 RNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL-DQLDPLNNGYHVVLS----NIYAE 195
R++ ++ N V A+L C H A A + + DQ+ ++ Y+V + ++Y +
Sbjct: 1345 RHVGVRYNAVTLSAVLLAC-AHAG---ALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCK 1400
Query: 196 AERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDG 255
R E + M+ VK W+++ VAG H +A++ ++ K++
Sbjct: 1401 CGRVEMAKKTFDRMKEKNVK---SWTAM---------VAGYGMHGRAKEALDIFYKMVRA 1448
Query: 256 MKLKGYIPNTSVV 268
YI SV+
Sbjct: 1449 GVKPNYITFVSVL 1461
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 96/210 (45%), Gaps = 5/210 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SG + + LI +Y G + A +F +++ FTW+ +I+ I+G
Sbjct: 45 QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTING 104
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+++AL + M+ GI + TF ++ AC + +D G+ S+ +YG +
Sbjct: 105 LSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSL-IKYGFSGDVFVQ 163
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
++D + G + A + M ++ N V W ++ G ++ +EA R D++
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKMRVR-NVVSWTTVISGLISCGDL---QEARRIFDEIPS 219
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMR 210
N + N Y ++ E+ + K M+
Sbjct: 220 KNVVSWTAMINGYIRNQQPEEALELFKRMQ 249
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 41 MEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG 100
+++ V +W+++I LA G + EAL +F+ + ++G+ P +F + +C + + G
Sbjct: 1102 VDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSG 1161
Query: 101 RRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
R + +G + ++D+ S+ G L++A +P++ N V W +++ G
Sbjct: 1162 -RMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLR-NVVSWTSMITG 1217
>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 182/352 (51%), Positives = 243/352 (69%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H+Y + R N+ + N L+DMY KCGCLE AR VF +M R V +W++M+ G
Sbjct: 327 RLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSG 386
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q +A+ F KM++ G P+ + F+ +L AC H G +D+GR +F MT +YGI+P+IEH+
Sbjct: 387 QGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHF 446
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDL RAG ++EAY FI+ MP++PN VWGALL CRVH +D+ A+ L QL P
Sbjct: 447 ACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAP 506
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+GY+V+LSNIYA+A W+DV VR M+ +G+KK PG S++ ++G VH F+AGD+ HP
Sbjct: 507 KQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHP 566
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
QA+ I+ + L+ MK GYIP T L D+E ++KE L HSEKLA+ F ++NT G
Sbjct: 567 QAKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQG 626
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPIRI KNLRVC DCH A KLIS+IV+R I+VRD NRFH F G CSCGDYW
Sbjct: 627 TPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 22/182 (12%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH+ + G N+ + N L+ MY KCGCL AR+V +M R V +W++M+ G A G
Sbjct: 158 QVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSG 217
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM---TTEYGIIPQI 117
Q +AL +M + + + T L + E ++ ++M T+ +I
Sbjct: 218 QFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSL--ENVQYIHNMFERMTKKNLIS-- 273
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGC----------RVHKN 164
+ M+ + EA M +KP+ V +LL C R+HK
Sbjct: 274 --WNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKY 331
Query: 165 ID 166
I+
Sbjct: 332 IE 333
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 6/203 (2%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
L+ Y G AR +F E+ V ++ MI+ + EAL+ F M+ P+
Sbjct: 77 LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136
Query: 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFI 140
TF +L AC + + G + + + G+ + +V + + G L+EA + +
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQ-VHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVL 195
Query: 141 RNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN--GYHVVLSNIYAEAER 198
MP + + V W +++ G D A E +++D L+ LN+ G LS +
Sbjct: 196 DQMPYR-DVVSWNSMVAGYAQSGQFDDALEICKEMDSLN-LNHDAGTMASLSPVVCYTS- 252
Query: 199 WEDVARVRKLMRNLGVKKTPGWS 221
E+V + + + K W+
Sbjct: 253 LENVQYIHNMFERMTKKNLISWN 275
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 182/351 (51%), Positives = 247/351 (70%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y +++ + N+ + TLIDMY+KCGC+E A VF MEE+ V TW+A+I GLA++G
Sbjct: 425 IHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGS 484
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+++L F M + G PN +TF+G+L AC HMG V++GR +F SM E+ I I+HYG
Sbjct: 485 VEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYG 544
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L+EA E I +MP+ P+ WGALLG CR H++ ++ E R+L QL P
Sbjct: 545 CMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQPD 604
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G+HV+LSNIYA W +V +R +M GV KTPG S I +G VHEF+AGD+THPQ
Sbjct: 605 HDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDKTHPQ 664
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
I M + + +K++GY+P TS V LDI+E+EKE L+RHSEKLA+ FGL+ P T
Sbjct: 665 INDIEHMLDVVAAKLKIEGYVPTTSEVSLDIDEEEKETALFRHSEKLAVAFGLITISPPT 724
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLR+C DCH KLIS+ +R+IVVRDR+RFH F+ G+CSC D+W
Sbjct: 725 PIRVTKNLRICNDCHTVVKLISKAFDRDIVVRDRHRFHHFKHGACSCMDFW 775
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 78/149 (52%), Gaps = 4/149 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N++I Y++CG ++ A +F M E+ V +WSAMI G A H EAL F +M G++
Sbjct: 341 NSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVR 400
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ + + AC H+ +D G ++ ++ + + + ++D+ + G ++ A E
Sbjct: 401 PDETALVSAISACTHLATLDLG-KWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALE 459
Query: 139 FIRNMPIKPNGV-VWGALLGGCRVHKNID 166
M K GV W A++ G ++ +++
Sbjct: 460 VFYAMEEK--GVSTWNAVILGLAMNGSVE 486
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ SGF ++ V NTL+++Y CG + ARRVF E + +W+ ++ G G
Sbjct: 126 QLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAG 185
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF 104
+ +EA F M E N + ++ G G V++ RR F
Sbjct: 186 EVEEAERVFEGMPE----RNTIASNSMIALFGRKGCVEKARRIF 225
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 3/148 (2%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
RN N++I ++ + GC+E ARR+F + ER + +WSAM+ + +EAL F
Sbjct: 200 RNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFV 259
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
+M G+ + V + L AC + V+ G R+ + + + G+ + ++ L S
Sbjct: 260 EMKGSGVAVDEVVVVSALSACSRVLNVEMG-RWVHGLAVKVGVEDYVSLKNALIHLYSSC 318
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGG 158
G + +A + + + W +++ G
Sbjct: 319 GEIVDARRIFDDGGELLDLISWNSMISG 346
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/351 (53%), Positives = 244/351 (69%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y +G + N+ V L+DMY KCG LE AR VF +++++ V W++MI G A+ G
Sbjct: 225 VHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGF 284
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++EAL F M +G+ P +TFIG+L ACGH GWV EG F M EYGI P+IEHYG
Sbjct: 285 SQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYG 344
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMV+LL RAG +++AYE ++NM I+P+ V+WG LLG CR+H I L E+ L +
Sbjct: 345 CMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLA 404
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +++LSNIYA W+ VAR+R +M++ GVKK PG SSI V+ VHEF+AG HP+
Sbjct: 405 NSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPK 464
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I+ M E++ +K GY P T +VL DI E EKE+ L HSEKLA+ FGL+NT PGT
Sbjct: 465 RKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGT 524
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I+I+KNLRVC DCH KLIS+I R+IVVRDRNRFH F GSCSCGDYW
Sbjct: 525 TIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 575
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 2/146 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+++ ++ Y K G L+ AR +F MEER W+ MI G +G EAL F +M
Sbjct: 135 KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM 194
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
++ KPN VT + +L ACG +G ++ G R+ +S GI + +VD+ S+ G
Sbjct: 195 LKAKAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQFNVHVGTALVDMYSKCGS 253
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGG 158
L++A + K + V W +++ G
Sbjct: 254 LEDARLVFDKIDDK-DVVAWNSMIVG 278
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 6/144 (4%)
Query: 25 YVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTF 84
Y G L+ + +F + +VF W+A+I G A+ G ++AL + +M+ G++PN TF
Sbjct: 19 YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78
Query: 85 IGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP 144
+L C ++ G+ +S + G + ++D+ +R G + A + MP
Sbjct: 79 SSILKLCP----IEPGKA-LHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMP 133
Query: 145 IKPNGVVWGALLGGCRVHKNIDLA 168
K + V A+L H +D A
Sbjct: 134 EK-SLVSLTAMLTCYAKHGELDAA 156
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 179/339 (52%), Positives = 250/339 (73%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N + +LIDMY KCG +E A++VF M+ +++ +W+AMI GLA+HG A AL F +M
Sbjct: 400 NTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMR 459
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
+ G +P+ +TF+G+L AC H G V+ GR+ F SM +Y I P+++HYGCM+DLL RAG
Sbjct: 460 DEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLF 519
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIY 193
EA ++NM +KP+G +WG+LLG CRVH N++L E A++ L +L+P N G +V+LSNIY
Sbjct: 520 DEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIY 579
Query: 194 AEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLL 253
A A RW+DVAR+R + + G+KK PG SSI VD VVHEF+ GD+ H Q++ I++M +++
Sbjct: 580 ATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKMLDEID 639
Query: 254 DGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCE 313
++ G++P+TS VL D++E+ KE L HSEKLA+ FGL++T P T IRI+KNLRVC
Sbjct: 640 QLLEKAGHVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKNLRVCG 699
Query: 314 DCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+CH+A KLIS+I NREI+ RDRNRFH F+ GSCSC DYW
Sbjct: 700 NCHSAIKLISKIFNREIIARDRNRFHHFKDGSCSCMDYW 738
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 94/174 (54%), Gaps = 1/174 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V + G N+R+ N LIDMY KCG L+ AR +F + E+ + +W+ MI G +
Sbjct: 286 VRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNS 345
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEAL F KM + ++PN VTF+ +L AC ++G +D G+ + ++ + +
Sbjct: 346 YKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWT 405
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
++D+ ++ G ++ A + M K G W A++ G +H + ++A E RQ+
Sbjct: 406 SLIDMYAKCGNIEAAKQVFAGMKPKSLG-SWNAMISGLAMHGHANMALELFRQM 458
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 2/146 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R+ LI Y GCL+ ARR+F E+ R +W+AMI G A G+ +EAL F +M
Sbjct: 196 RDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEM 255
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ PN T + +L AC G ++ G + S ++G+ + ++D+ S+ G
Sbjct: 256 KRANVAPNESTMVTVLSACAQSGSLELG-NWVRSWIEDHGLGSNLRLVNALIDMYSKCGD 314
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGG 158
L +A + + + + + W ++GG
Sbjct: 315 LDKARDLFEGI-CEKDIISWNVMIGG 339
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 90/186 (48%), Gaps = 5/186 (2%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88
G L A +F +E+ F W+ MI+G ++ A+ + +M+ G++PN TF LL
Sbjct: 80 GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLL 139
Query: 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPN 148
+C +G EG++ + + G+ + ++++ ++ G L A E + + +
Sbjct: 140 KSCAKVGATQEGKQ-IHGHVLKLGLESDPFVHTSLINMYAQNGELGYA-ELVFSKSSLRD 197
Query: 149 GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKL 208
V + AL+ G + +D A ++ D ++ ++ +++ YA++ R+E+ +
Sbjct: 198 AVSFTALITGYTLRGCLDDARRLFEEIPVRDAVS--WNAMIAG-YAQSGRFEEALAFFQE 254
Query: 209 MRNLGV 214
M+ V
Sbjct: 255 MKRANV 260
>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 181/352 (51%), Positives = 243/352 (69%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H+Y + + N+ + N L+DMY KCGCLE AR VF +M R V +W++M+ G
Sbjct: 327 RLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSG 386
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q +A+ F KM++ G P+ + F+ +L AC H G +D+GR +F MT +YGI+P+IEH+
Sbjct: 387 QGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHF 446
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDL RAG ++EAY FI+ MP++PN VWGALL CRVH +D+ A+ L QL P
Sbjct: 447 ACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAP 506
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+GY+V+LSNIYA+A W+DV VR M+ +G+KK PG S++ ++G VH F+AGD+ HP
Sbjct: 507 KQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHP 566
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
QA+ I+ + L+ MK GYIP T L D+E ++KE L HSEKLA+ F ++NT G
Sbjct: 567 QAKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQG 626
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPIRI KNLRVC DCH A KLIS+IV+R I+VRD NRFH F G CSCGDYW
Sbjct: 627 TPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 104/239 (43%), Gaps = 34/239 (14%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH+ + G N+ + N L+ MY KCGCL AR+V +M R V +W++M+ G A G
Sbjct: 158 QVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSG 217
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM---TTEYGIIPQI 117
Q +AL +M + + + T L + E ++ ++M T+ +I
Sbjct: 218 QFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSL--ENVQYIHNMFERMTKKNLIS-- 273
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGC----------RVHKN 164
+ M+ + EA M +KP+ V +LL C R+HK
Sbjct: 274 --WNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKY 331
Query: 165 IDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSI 223
I E+ + Q + L L N L ++YA+ E+ V MR ++ W+S+
Sbjct: 332 I---EKGNLQPNLL--LENA----LLDMYAKCGCLEEARDVFDKMR---LRDVVSWTSM 378
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 6/203 (2%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
L+ Y G AR +F E+ V ++ MI+ + EAL+ F M+ P+
Sbjct: 77 LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136
Query: 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFI 140
TF +L AC + + G + + + G+ + +V + + G L+EA + +
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQ-VHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVL 195
Query: 141 RNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN--GYHVVLSNIYAEAER 198
MP + + V W +++ G D A E +++D L+ LN+ G LS +
Sbjct: 196 DQMPYR-DVVSWNSMVAGYAQSGQFDDALEICKEMDSLN-LNHDAGTMASLSPVVCYTS- 252
Query: 199 WEDVARVRKLMRNLGVKKTPGWS 221
E+V + + + K W+
Sbjct: 253 LENVQYIHNMFERMTKKNLISWN 275
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/351 (53%), Positives = 253/351 (72%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y N + + + L+DMY KCG L+ A VF +ME++ VFTW+AMI GL +HG+
Sbjct: 315 IHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGR 374
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A++A+ F KM + +PNG+T +G+L AC H G VDEG R F SM YGI P +EHYG
Sbjct: 375 AEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYG 434
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL RAG L EA E + +MP++P+ VWGALLG CR H +++L E + L +L+P
Sbjct: 435 CVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQ 494
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G + +LSNIYA A RW+DVA VRKLM+ GVK + G S I DGVVHEF GD +HPQ
Sbjct: 495 NSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQ 554
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ I+ M + ++ +K++G+ PNTS VL DIEE+EKE L HSEKLA+ FGL+NT PGT
Sbjct: 555 MKNIYLMLKNMIKRLKMEGFSPNTSQVLFDIEEEEKEAELQYHSEKLAIAFGLINTKPGT 614
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I ++KNLR+CEDCH+AFKLIS++ +REI+VRDR R+H F+ G+CSC D+W
Sbjct: 615 TIHVVKNLRMCEDCHSAFKLISQVYDREIIVRDRARYHHFKTGTCSCKDFW 665
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 2/158 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+N+ N ++ KCG +E AR +F EM+E+ +WSAMI G G KEAL FN M
Sbjct: 225 KNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVM 284
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
I+P +L AC ++G +D+GR + + +VD+ ++ G
Sbjct: 285 QREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTA-LVDMYAKCGR 343
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
L A++ M K W A++ G +H + A E
Sbjct: 344 LDMAWDVFEKME-KKEVFTWNAMICGLGMHGRAEDAIE 380
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 114/276 (41%), Gaps = 35/276 (12%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + G ++ + + I MY G +EGARR+ E V ++AMI G G
Sbjct: 151 QVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCG 210
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ + A F M + + V G+ G ++E R F M + I +
Sbjct: 211 EVEAAKELFWSMEDKNVGSWNVMVSGM----AKCGMIEEARELFNEMKEKNEI-----SW 261
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
M+D + G+ +EA E M I+P V ++L C N+ ++
Sbjct: 262 SAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAAC---ANLGALDQGRWIHAY 318
Query: 178 LDPLNNGYHVVLS----NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFV 233
++ +N + VL ++YA+ R + V + M K+ W+++ +
Sbjct: 319 VNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEK---KEVFTWNAM---------I 366
Query: 234 AGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVL 269
G H +AE +++ K M+ + + PN +L
Sbjct: 367 CGLGMHGRAEDAIELFFK----MQKQKFRPNGITLL 398
>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 577
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 181/351 (51%), Positives = 246/351 (70%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + ++ + N LIDMY KCG LE A VF + + +F W+++I GL ++G+
Sbjct: 227 IHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGR 286
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA+ +F M + GIKP+GVTF+G+L C H G + G+R+F M YG+ P +EHYG
Sbjct: 287 GEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYG 346
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG+L+EA E IR MP+KPN +V G+LL C++HK+ L E+ ++QL +LDP
Sbjct: 347 CMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPC 406
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G +V LSN+YA RW+DV RKLM GV KTPG SSI V+ +VHEFVAGD +HPQ
Sbjct: 407 DGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQ 466
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I +++ +K +G++PNT+ VL DIEE+EKE + HSE++A+ FGLM+TPPG
Sbjct: 467 FTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGK 526
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR++KNLR C DCH+A KLIS REI+VRDR RFH F+ GSCSC DYW
Sbjct: 527 TIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 577
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 3/141 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEM-EERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGI 77
N +ID Y K L A+ +F+ M R TW+ MI G+ A++ F +M +
Sbjct: 142 NAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENV 201
Query: 78 KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAY 137
KP VT + LL AC H+G +D G + T+ I + ++D+ + G L+ A
Sbjct: 202 KPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLG-NALIDMYCKCGALEAAI 260
Query: 138 EFIRNMPIKPNGVVWGALLGG 158
+ + + N W +++ G
Sbjct: 261 DVFHGLS-RKNIFCWNSIIVG 280
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 9/149 (6%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF ++ + L+D Y K G L+ A+RVF+ M R V +AMI L+ HG +EA F
Sbjct: 40 GFEYDMILQTGLLDFYAKVGDLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLF 99
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+ M E N ++ ++ +G ++ R F + + + + ++D +
Sbjct: 100 DNMTE----RNSCSWNSMITCYCKLGDINSARLMF-----DCNPVKDVVSWNAIIDGYCK 150
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ L A E M N V W ++
Sbjct: 151 SKQLVAAQELFLLMGSARNSVTWNTMISA 179
>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 181/351 (51%), Positives = 246/351 (70%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + ++ + N LIDMY KCG LE A VF + + +F W+++I GL ++G+
Sbjct: 155 IHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGR 214
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA+ +F M + GIKP+GVTF+G+L C H G + G+R+F M YG+ P +EHYG
Sbjct: 215 GEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYG 274
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG+L+EA E IR MP+KPN +V G+LL C++HK+ L E+ ++QL +LDP
Sbjct: 275 CMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPC 334
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G +V LSN+YA RW+DV RKLM GV KTPG SSI V+ +VHEFVAGD +HPQ
Sbjct: 335 DGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQ 394
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I +++ +K +G++PNT+ VL DIEE+EKE + HSE++A+ FGLM+TPPG
Sbjct: 395 FTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGK 454
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR++KNLR C DCH+A KLIS REI+VRDR RFH F+ GSCSC DYW
Sbjct: 455 TIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 505
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTV--FTWSAMIQGLAIHGQAKEALT 67
GF ++ + L+D Y K G +E AR +F M ER TW+ MI G+ A++
Sbjct: 60 GFEYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAIS 119
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F +M +KP VT + LL AC H+G +D G + T+ I + ++D+
Sbjct: 120 MFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLG-NALIDMY 178
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ G L+ A + + + N W +++ G
Sbjct: 179 CKCGALEAAIDVFHGLS-RKNIFCWNSIIVG 208
>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 176/351 (50%), Positives = 250/351 (71%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y +SG + ++ T+IDMY KCGCLE A VF E+ ++ + +W+ MI GLA+HG+
Sbjct: 219 IHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGK 278
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ A+ F +M + P+G+TF+ +L AC H G V+EG+ +F MT G+ P +EH+G
Sbjct: 279 GEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFG 338
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L+EA + I MP+ P+ V GAL+G CR+H N +L E+ +++ +L+P
Sbjct: 339 CMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPH 398
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +V+L+N+YA A RWEDVA+VRKLM + GVKK PG+S I + V EF+AG HPQ
Sbjct: 399 NSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQ 458
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A++I+ +++L+ ++ GY+P+T VL DI+E+EKE LY HSEKLA+ FGL+ T PG
Sbjct: 459 AKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGE 518
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+RI KNLR+C DCH A KLIS++ +REI++RDRNRFH F+ G CSC DYW
Sbjct: 519 TLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 569
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM--EERTVFTWSAMIQGLAI 58
++H + + GF + N LI MYV LE ARRVF M +R +W+AMI
Sbjct: 115 QIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQ 174
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+ EA F++M + + +L AC +G +++G ++ + + GI +
Sbjct: 175 SNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQG-KWIHGYIEKSGIELDSK 233
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGV-VWGALLGGCRVHKNIDLAEEASRQLDQ 177
++D+ + G L++A E +P K G+ W ++GG +H + A E +++++
Sbjct: 234 LATTVIDMYCKCGCLEKASEVFNELPQK--GISSWNCMIGGLAMHGKGEAAIELFKEMER 291
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/351 (51%), Positives = 251/351 (71%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + ++ + L+DMY KCG +E A +VF EM E+ V TW+A+I GLA+ GQ
Sbjct: 310 LHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQ 369
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+ AL F++M G+KP+ +TF+G+L AC H G+VDEG F SM+ YGI P IEHYG
Sbjct: 370 AENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYG 429
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+VD+L RAG + EA E I++MP+ P+ V G LLG CR+H N++ AE A++QL ++DP
Sbjct: 430 GLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPY 489
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +V+LSNIY +++WE+ R R+LM G++K PG S I V GVVHEFV GD +H Q
Sbjct: 490 HSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQ 549
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ +I +M E ++ +K GY+P+ S VL D+ E+EKE L HSEKLA+ FGL++T GT
Sbjct: 550 SSEINEMLEDMISKLKNAGYVPDKSEVLFDMAEEEKETELSLHSEKLAIAFGLLSTSVGT 609
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR++KNLR+C DCH+A KLIS++ NREI+VRDRNRFH F+ G+CSC +W
Sbjct: 610 PIRVVKNLRICSDCHSATKLISKLYNREIIVRDRNRFHHFKDGTCSCRGFW 660
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 91/158 (57%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+HEY ++ GF R++ + L+D+Y KCGC++ AR +F + +E+ +F+W+ MI G
Sbjct: 208 RIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDS 267
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F +M GIK + VT LL AC H+G ++ G ++ ++ + I +
Sbjct: 268 NYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELG-KWLHAYIKKQRIDVDVALG 326
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ ++ G ++ A + MP K + + W AL+ G
Sbjct: 327 TALVDMYAKCGSIETAIQVFHEMPEK-DVMTWTALILG 363
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 83/159 (52%), Gaps = 3/159 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +S + GF + NTL++MY CGCL AR+VF +ME++TV +W+ MI A
Sbjct: 106 QIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWD 165
Query: 61 QAKEALTSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
Q EA+ F++M++ +KPN VT + +L AC + +R + E+G +
Sbjct: 166 QPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKR-IHEYIDEHGFGRHVVL 224
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ + G +Q A + K N W ++ G
Sbjct: 225 NTVLMDVYCKCGCVQLARDLFDKAQEK-NLFSWNIMING 262
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 10/182 (5%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88
G L+ AR VF ++ T +T +++I+G +EAL + +M+ G+ P+ TF L
Sbjct: 36 GSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLF 95
Query: 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPN 148
+C + EG++ + +T+ G ++++ S G L A + M K
Sbjct: 96 KSCRNSS---EGKQ-IHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDK-T 150
Query: 149 GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN--GYHVVLSNIYAEAERWEDVARVR 206
V W ++G VH D EA R D++ N V L N+ R D+A V+
Sbjct: 151 VVSWATMIG---VHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVK 207
Query: 207 KL 208
++
Sbjct: 208 RI 209
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 182/352 (51%), Positives = 248/352 (70%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + G R N V + LI MY KCG LE +R VF +E+R VF WSAMI GLA+HG
Sbjct: 387 IHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGC 446
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ F KM E +KPNGVTF + AC H G VDE F+ M + YGI+P+ +HY
Sbjct: 447 GNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYA 506
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VD+L R+G+L++A +FI MPI P+ VWGALLG C++H N++LAE A +L +L+P
Sbjct: 507 CIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPR 566
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G HV+LSNIYA+ +WE+V+ +RK MR G+KK PG SSI +DG++HEF++GD HP
Sbjct: 567 NDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPM 626
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKE-KEKFLYRHSEKLALTFGLMNTPPG 300
+EK++ ++++ +K GY P S VL IEE+E KE+ L HSEKLA+ +GL++T
Sbjct: 627 SEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAP 686
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR++KNLRVC DCH+ KLIS++ +REI+VRDR RFH F+ G CSC D+W
Sbjct: 687 KVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 2/178 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + +S ++ V N+LI Y CG L+ A +VF ++E+ V +W++MI G G
Sbjct: 153 LHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGS 212
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+AL F KM +K + VT +G+L AC + ++ GR+ S E + +
Sbjct: 213 PDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVC-SYIEENRVNVNLTLAN 271
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
M+D+ ++ G +++A M K N V W +L G + ++ + A E + Q D
Sbjct: 272 AMLDMYTKCGSIEDAKRLFDAMEEKDN-VTWTTMLDGYAISEDYEAAREVLNSMPQKD 328
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 108/225 (48%), Gaps = 36/225 (16%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAI-- 58
+V Y ++ N+ + N ++DMY KCG +E A+R+F MEE+ TW+ M+ G AI
Sbjct: 253 QVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISE 312
Query: 59 -----------------------------HGQAKEALTSFNKM-IEIGIKPNGVTFIGLL 88
+G+ EAL F+++ ++ +K N +T + L
Sbjct: 313 DYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTL 372
Query: 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPN 148
AC +G ++ G R+ +S ++GI ++ + S+ G L+++ E ++ K +
Sbjct: 373 SACAQVGALELG-RWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-KRD 430
Query: 149 GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIY 193
VW A++GG +H + A + ++ + + NG V +N++
Sbjct: 431 VFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNG--VTFTNVF 473
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 185/351 (52%), Positives = 244/351 (69%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y G + N+ V LIDMY KCG LE AR VF + ++ V W++MI G A+HG
Sbjct: 295 IHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGF 354
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++ AL F +M E G KP +TFIG+L ACGH G V+EGR FF M +YGI P+IEHYG
Sbjct: 355 SQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYG 414
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMV+LL RAG L+EAY ++NM I + V+WG LLG CR+H NI L EE ++ L
Sbjct: 415 CMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLA 474
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +V+LSN+YA WE VA++R LM+ G++K G SSI VD VHEFVAG+ HP+
Sbjct: 475 NSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAGERKHPK 534
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I+ M ++ +K +GY P T VVL D+ E++KE+ L HSEKLA+ FGL++T PGT
Sbjct: 535 SKEIYVMLNEINSWLKARGYTPQTDVVLHDLREEQKEQSLEVHSEKLAIAFGLISTKPGT 594
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
++I+KNLRVC DCH K+ISEI R+IV+RDRNRFH F+ G CSCGDYW
Sbjct: 595 TVKIVKNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 645
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 81/153 (52%), Gaps = 8/153 (5%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ T++ Y K G L+ AR +F M+ER V W+ MI G A G E+L F +M
Sbjct: 205 RSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRM 264
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ PN VT + +L ACG +G ++ G R+ +S GI + ++D+ S+ G
Sbjct: 265 LVAKAIPNEVTVLAVLSACGQLGALESG-RWIHSYIENKGIQINVHVGTALIDMYSKCGS 323
Query: 133 LQEA---YEFIRNMPIKPNGVVWGALLGGCRVH 162
L++A ++ IR+ + V W +++ G +H
Sbjct: 324 LEDARLVFDRIRDKDV----VAWNSMIVGYAMH 352
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Query: 25 YVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTF 84
Y G L+ + VF +E VF++SA+I A +++M+ G++PN TF
Sbjct: 89 YAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTF 148
Query: 85 IGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP 144
+L +C E + + + G+ + +VD+ +R G + A + MP
Sbjct: 149 SSVLKSCSL-----ESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMP 203
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 176/351 (50%), Positives = 250/351 (71%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y +SG + ++ T+IDMY KCGCLE A VF E+ ++ + +W+ MI GLA+HG+
Sbjct: 274 IHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGK 333
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ A+ F +M + P+G+TF+ +L AC H G V+EG+ +F MT G+ P +EH+G
Sbjct: 334 GEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFG 393
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L+EA + I MP+ P+ V GAL+G CR+H N +L E+ +++ +L+P
Sbjct: 394 CMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPH 453
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +V+L+N+YA A RWEDVA+VRKLM + GVKK PG+S I + V EF+AG HPQ
Sbjct: 454 NSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQ 513
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A++I+ +++L+ ++ GY+P+T VL DI+E+EKE LY HSEKLA+ FGL+ T PG
Sbjct: 514 AKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGE 573
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+RI KNLR+C DCH A KLIS++ +REI++RDRNRFH F+ G CSC DYW
Sbjct: 574 TLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 624
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 82/167 (49%), Gaps = 4/167 (2%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+R++ +LI Y + G ++ AR VF M ER +W+AMI + EA F++
Sbjct: 183 QRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDR 242
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M + + +L AC +G +++G ++ + + GI + ++D+ + G
Sbjct: 243 MRLENVVLDKFVAASMLSACTGLGALEQG-KWIHGYIEKSGIELDSKLATTVIDMYCKCG 301
Query: 132 FLQEAYEFIRNMPIKPNGV-VWGALLGGCRVHKNIDLAEEASRQLDQ 177
L++A E +P K G+ W ++GG +H + A E +++++
Sbjct: 302 CLEKASEVFNELPQK--GISSWNCMIGGLAMHGKGEAAIELFKEMER 346
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 185/346 (53%), Positives = 243/346 (70%)
Query: 7 NQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEAL 66
+++ F N + LID+Y KCG + A VF M+E+ W+A+I GLA++G K +
Sbjct: 341 DRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISF 400
Query: 67 TSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126
F ++ ++GIKP+G TFIGLL C H G VDEGRR+F SM + + P IEHYGCMVDL
Sbjct: 401 GLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDL 460
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYH 186
L RAG L EA++ IRNMP++ N +VWGALLG CR+H++ LAE A +QL +L+P N+G +
Sbjct: 461 LGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNY 520
Query: 187 VVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIF 246
V+LSNIY+ +W++ A+VR M ++K PG S I VDG+VHEF+ GD+ HP +EKI+
Sbjct: 521 VLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIY 580
Query: 247 QMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIM 306
++L MK+ GY+P T VL DIEE+EKE FL HSEKLA+ FGL++ P IR++
Sbjct: 581 AKLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHFLGCHSEKLAIAFGLISATPTAVIRVV 640
Query: 307 KNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
KNLRVC DCH A KLIS I REI VRD NRFHCF+ GSCSC DYW
Sbjct: 641 KNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFREGSCSCNDYW 686
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 2/177 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ + G RN+ V +L+DMY KCG +E AR VF M E+ + +W AMIQG A++G
Sbjct: 235 IHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGL 294
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA+ F +M +KP+ T +G+L AC +G ++ G + + +
Sbjct: 295 PKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELG-EWVSGLVDRNEFLYNPVLGT 353
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++DL ++ G + A+E + M K + VVW A++ G ++ + ++ Q+++L
Sbjct: 354 ALIDLYAKCGSMSRAWEVFKGMKEK-DRVVWNAIISGLAMNGYVKISFGLFGQVEKL 409
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 99/178 (55%), Gaps = 6/178 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + GF ++ V +L+ +Y KCG LE A +VF ++ ++ V +W+A+I G G
Sbjct: 133 KIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVG 192
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +EA+ F +++E+ + P+ T + +L AC +G ++ G + + E G++ +
Sbjct: 193 KFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSG-EWIHKCIMEMGMVRNVFVG 251
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASRQ 174
+VD+ ++ G +++A MP K + V WGA++ G ++ + IDL + R+
Sbjct: 252 TSLVDMYAKCGNMEKARSVFDGMPEK-DIVSWGAMIQGYALNGLPKEAIDLFLQMQRE 308
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 73/144 (50%), Gaps = 6/144 (4%)
Query: 19 NTLIDMYVKCGC----LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
N L++M ++C R +F ++++ +F W+ MI+GL + +A+ + M
Sbjct: 46 NYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRS 105
Query: 75 IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ 134
G PN TF +L AC + + G + +++ + G + +V L ++ G+L+
Sbjct: 106 EGFLPNNFTFPFVLKACARLLDLQLGVK-IHTLVVKGGFDCDVFVKTSLVCLYAKCGYLE 164
Query: 135 EAYEFIRNMPIKPNGVVWGALLGG 158
+A++ ++P K N V W A++ G
Sbjct: 165 DAHKVFDDIPDK-NVVSWTAIISG 187
>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 611
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 177/351 (50%), Positives = 249/351 (70%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V + + G +++ +CN LID KCG ++GA VF MEERTV +W+++I LA+ G+
Sbjct: 261 VGRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMEERTVVSWTSVIDALAMEGR 320
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA+ F +M +G+ P+ V FIG+L AC H G VDEGR +F SM TEYGI P+IEHYG
Sbjct: 321 GKEAVGVFEEMKAVGVLPDDVAFIGVLTACSHAGMVDEGRGYFDSMKTEYGIEPKIEHYG 380
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+ RAG +++ EF+R MP+KPN ++W L+ CR H ++L E +R L P
Sbjct: 381 CMVDMFGRAGMVEQGLEFVRAMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEFPA 440
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ +V+LSN+YA +RW++ + +R+ M G+KK PG S + +DG VHEF+AGDE+HPQ
Sbjct: 441 HEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQ 500
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I++M E++ ++ G+I TS VLLD++E++KE L HSEKLA+ F L+ TPPGT
Sbjct: 501 YKEIYRMVEEMSRELRRIGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFVLLRTPPGT 560
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+R++KNLRVC DCHAA K IS++ NREIVVRDR+RFH F+ GSCSC D+W
Sbjct: 561 QVRVVKNLRVCSDCHAAIKCISQVYNREIVVRDRSRFHRFKDGSCSCKDFW 611
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMY--VKCGCLEGARRVFIEMEERTVFTWSAMIQGLAI 58
+ H + + GF + V NTLI MY G L AR VF M + TWSAMI G
Sbjct: 157 QAHAAALKFGFAADHYVSNTLIHMYSCFGAGFLGDARNVFERMPRESAVTWSAMIGGYVR 216
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGL 87
G + +A+ F M G++P+ VT IG+
Sbjct: 217 AGLSSDAVVLFRGMQVSGVRPDEVTVIGV 245
>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 672
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 179/351 (50%), Positives = 250/351 (71%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ + N+ V +++DMY KCG +E AR+ F ++ + V +W+ M+ G +HG
Sbjct: 322 IHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGH 381
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA+ F +MI GIKPN +TF+ +L AC H G + EG +F M E+ + P IEHY
Sbjct: 382 GKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYS 441
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG+L+EAY I+ M +KP+ +VWG+LLG CR+HKN++L E ++R+L +LDP
Sbjct: 442 CMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPS 501
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+V+LSNIYA+A RW+DV R+R LM+N G+ KTPG+S + G VH F+ GD+ HPQ
Sbjct: 502 NCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQ 561
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
EKI++ ++L ++ GY+PN + VL D++ +EK L HSEKLA+ FG+MN+ PG+
Sbjct: 562 HEKIYEYLDELNVKLQEVGYMPNVTSVLYDVDVEEKGMVLRVHSEKLAVAFGIMNSVPGS 621
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I+I+KNLR+C DCH A KLIS+IVNREIV+RD RFH F+ G CSCGDYW
Sbjct: 622 VIQIIKNLRICGDCHFAIKLISKIVNREIVIRDSKRFHHFKDGLCSCGDYW 672
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + GF + V NTL+D Y KCG + +R+VF MEE V +W+++I A +G
Sbjct: 220 VHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGL 279
Query: 62 AKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGR 101
+ EA + F+ M++ G ++ N VT +L AC H G + G+
Sbjct: 280 SVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGK 320
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H+ + G+ +I V + LIDMY KCG L AR++F E+ ER V +W++MI G +
Sbjct: 107 QIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNE 166
Query: 61 QAKEALTSFNKMI 73
+A+EA+ F + +
Sbjct: 167 RAREAVFLFKEFL 179
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
Query: 41 MEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG 100
+++ +V++W+++I A G + +AL +F+ M ++ + PN TF + +C + + G
Sbjct: 46 VDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAG 105
Query: 101 RRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + +G I ++D+ S+ G+L +A + +P + N V W +++ G
Sbjct: 106 KQ-IHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIP-ERNVVSWTSMISG 161
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 178/353 (50%), Positives = 247/353 (69%), Gaps = 2/353 (0%)
Query: 2 VHEY--SNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
VH Y N + + + +LIDMY KCG L A+R+F M +++ TW+AMI G A+H
Sbjct: 384 VHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMH 443
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G AL F++M G P+ +TF+G+L AC H G + GRR+F SM +Y + P++ H
Sbjct: 444 GHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPH 503
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YGCM+DL RAG EA ++NM +KP+G +W +LLG CR+H+ I+LAE ++ L +L+
Sbjct: 504 YGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELE 563
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N +V+LSNIYA A RWEDVA++R + + +KK PG SSI VD VVHEF+ GD+ H
Sbjct: 564 PENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVH 623
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
PQ+ +I++M +++ ++ G++P+TS VL D++E+ KE L HSEKLA+ FGL++T P
Sbjct: 624 PQSNEIYKMLDEIDMRLEKAGFVPDTSEVLYDMDEEWKEGVLSHHSEKLAIAFGLISTKP 683
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GT IRIMKNLRVC +CH+A KLIS+I NREI+ RDRNRFH F+ GSCSC DYW
Sbjct: 684 GTTIRIMKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCKDYW 736
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 87/168 (51%), Gaps = 2/168 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V + G NIR+ N LIDMYVKCG LE A +F +++++ V +W+ MI G
Sbjct: 283 VRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSC 342
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHY 120
KEAL F +M++ I PN VTF+ +L AC ++G +D G+ Y + + +
Sbjct: 343 YKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALW 402
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++D+ ++ G L A M K + W A++ G +H + D A
Sbjct: 403 TSLIDMYAKCGDLAVAKRIFDCMNTK-SLATWNAMISGFAMHGHTDTA 449
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 1/140 (0%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
LI Y G L+ AR +F E+ R V +W+AMI G A G+ +EA+ F +M +
Sbjct: 198 TALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVT 257
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
PN T + +L AC G + + S + G+ I ++D+ + G L+EA
Sbjct: 258 PNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASN 317
Query: 139 FIRNMPIKPNGVVWGALLGG 158
+ K N V W ++GG
Sbjct: 318 LFEKIQDK-NVVSWNVMIGG 336
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 87/195 (44%), Gaps = 7/195 (3%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88
G L A +F + W+ MI+GL+ AL + MI G +PN TF +
Sbjct: 76 GDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIF 135
Query: 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPN 148
+C + EG++ ++ + G+ + ++++ ++ G L A ++ +
Sbjct: 136 KSCTKIRGAHEGKQ-VHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMR-D 193
Query: 149 GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKL 208
V + AL+ G +D A E ++ D ++ ++ ++S YA++ R E+ +
Sbjct: 194 AVSFTALITGYASKGFLDEARELFDEIPVRDVVS--WNAMISG-YAQSGRVEEAMAFFEE 250
Query: 209 MRNLGVKKTPGWSSI 223
MR K TP S++
Sbjct: 251 MRR--AKVTPNVSTM 263
>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
Length = 673
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 176/352 (50%), Positives = 246/352 (69%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H + G N+ V +++DMY KCG +E A R F +++E+ + +WSAMI G +HG
Sbjct: 322 RIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHG 381
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +EAL F +M G++PN +TFI +L AC H G +DEGR ++ +M E+GI +EHY
Sbjct: 382 RGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHY 441
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLL RAG L EAY I+ M +KP+ +WGALL CR+HKN++LAE + ++L +LD
Sbjct: 442 GCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDA 501
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+GY+V+LSNIYAEA W+DV R+R L++ ++K PG+SS + G ++ F GD++HP
Sbjct: 502 SNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHP 561
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q +I+ EKLL+ M+ GY+PNT VL D++E+EKE L HSEKLA+ F LMN+ P
Sbjct: 562 QHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPR 621
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ I I+KNLRVC DCH A K I++I REI++RD RFH F+ G CSC DYW
Sbjct: 622 SVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 673
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 7/165 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGC--LEGARRVFIEMEERTVFTWSAMIQGLAIH 59
+H + GF RN V NT++D Y K G LE AR+VF ME R V +W++MI A +
Sbjct: 219 LHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQN 277
Query: 60 GQAKEALTSFNKMIEI--GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
G + EA+ ++KM+ + GIK N V +L AC H G + G+R ++ G+ +
Sbjct: 278 GMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKR-IHNQVVRMGLEENV 336
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ S+ G ++ A R + K N + W A++ G +H
Sbjct: 337 YVGTSIVDMYSKCGRVEMASRAFRKIKEK-NILSWSAMITGYGMH 380
>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 773
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 177/352 (50%), Positives = 249/352 (70%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y ++GF NI + ++L+DMY KCG + AR++F M R + +W+AMI G A+HG
Sbjct: 422 QLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHG 481
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A +A+ F +M GI+PN V F+ +L AC H G VDE ++F SMT ++GI P +EHY
Sbjct: 482 HALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHY 541
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+ DLL RAG L+EAY+FI MPI P G VW LL CRVHKN+D+AE+ + ++ ++DP
Sbjct: 542 AAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDP 601
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +++L+NIY+ A RW++ A+ R +R G++KTP S I V V+ F+AGDE+HP
Sbjct: 602 KNTGAYILLANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHP 661
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
EKI + E L++ M+ +GY+P+TS V D+EE++K+ + HSE+LA+ FG++NTP G
Sbjct: 662 CYEKIREAMEVLMELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAG 721
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IR+ KNLRVC DCH A K IS+IV REIVVRD +RFH F+ G+CSCGDYW
Sbjct: 722 TTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 773
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 4/191 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H S + G + V ++LIDMY KC + + RVF + ER +W+++I G +G
Sbjct: 322 IHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGL 381
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
E L F +M+ IKP +F ++ AC H+ + G++ + T G I
Sbjct: 382 FDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQ-LHGYITRNGFDENIFIAS 440
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL--DQLD 179
+VD+ ++ G ++ A + M ++ + V W A++ GC +H + A E Q+ + ++
Sbjct: 441 SLVDMYAKCGNIRTARQIFDRMRLR-DMVSWTAMIMGCALHGHALDAIELFEQMKTEGIE 499
Query: 180 PLNNGYHVVLS 190
P + VL+
Sbjct: 500 PNYVAFMAVLT 510
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90
++ R++F M E+ + +W+ +I G A +G E LT +M +KP+ T +L
Sbjct: 250 VDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPL 309
Query: 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGV 150
+ +G+ + + G+ ++ ++D+ ++ + ++Y + + + +G+
Sbjct: 310 IAENVDISKGKE-IHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYR-VFTLLTERDGI 367
Query: 151 VWGALLGGC 159
W +++ GC
Sbjct: 368 SWNSIIAGC 376
>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 182/352 (51%), Positives = 257/352 (73%), Gaps = 4/352 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ ++ + + + +L+DMY KCG ++ A VF +M + V +W+AMI GLA+HG+
Sbjct: 276 IHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGR 335
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A++A+ F+KM I PN +TF+G+L+AC H G V +G F SM EYG+ PQIEHYG
Sbjct: 336 AEDAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYG 392
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL RAG L EA + + ++P +P VWGALLG CR H N++L E + L +L+P
Sbjct: 393 CIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQ 452
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD-GVVHEFVAGDETHP 240
N+G + +LSNIYA+A RWE+V VRKLM+ G+K TPG S I + G VH+F+ GD +HP
Sbjct: 453 NSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHP 512
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q + I+QM +K+ + ++++GY P+ S VL DI+E+EKE +++HSEKLA+ FGL+NT PG
Sbjct: 513 QVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPG 572
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IRI+KNLRVCEDCH+A KLIS++ NREI+VRDR R+H F+ G+CSC D+W
Sbjct: 573 TTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 624
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 10/179 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + G + + ++ I MY G L ARR+ + +G +
Sbjct: 179 QVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCMPDRKGCFM-- 236
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL F++M + I+P +L AC ++G +D+G R+ ++ I
Sbjct: 237 ---EALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQG-RWIHTYAKRNSIQLDGVLG 292
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
+VD+ ++ G + A+E M K W A++GG +H AE+A ++D
Sbjct: 293 TSLVDMYAKCGRIDLAWEVFEKMSNKEVS-SWNAMIGGLAMHGR---AEDAIDLFSKMD 347
Score = 44.7 bits (104), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 60/290 (20%), Positives = 113/290 (38%), Gaps = 54/290 (18%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGC-----LEGARRVFIEMEERTVFTWSAMIQG 55
+ H ++G ++ + +L+ Y E + RVF + + VF W+ MI+
Sbjct: 73 QAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKV 132
Query: 56 LAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGI-- 113
+ + +A+ + +M+ +PN T+ +L AC G V EG + ++ ++G+
Sbjct: 133 CIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQ-VHAHLVKHGLGG 191
Query: 114 --------IPQIEHYGCMVD----------------LLSRAGFLQEAYEFIRNM---PIK 146
I +G +V+ + R G EA E M I+
Sbjct: 192 DGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCMPDRKGCFMEALEIFHQMQKEKIR 251
Query: 147 PNGVVWGALLGGCRVHKNID----LAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDV 202
P V ++L C +D + A R QLD + L ++YA+ R +
Sbjct: 252 PRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGV---LGTSLVDMYAKCGRIDLA 308
Query: 203 ARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKL 252
V + M N K+ W+++ + G H +AE ++ K+
Sbjct: 309 WEVFEKMSN---KEVSSWNAM---------IGGLAMHGRAEDAIDLFSKM 346
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 182/352 (51%), Positives = 257/352 (73%), Gaps = 4/352 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ ++ + + + +L+DMY KCG ++ A VF +M + V +W+AMI GLA+HG+
Sbjct: 324 IHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGR 383
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A++A+ F+KM I PN +TF+G+L+AC H G V +G F SM EYG+ PQIEHYG
Sbjct: 384 AEDAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYG 440
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL RAG L EA + + ++P +P VWGALLG CR H N++L E + L +L+P
Sbjct: 441 CIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQ 500
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD-GVVHEFVAGDETHP 240
N+G + +LSNIYA+A RWE+V VRKLM+ G+K TPG S I + G VH+F+ GD +HP
Sbjct: 501 NSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHP 560
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q + I+QM +K+ + ++++GY P+ S VL DI+E+EKE +++HSEKLA+ FGL+NT PG
Sbjct: 561 QVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPG 620
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IRI+KNLRVCEDCH+A KLIS++ NREI+VRDR R+H F+ G+CSC D+W
Sbjct: 621 TTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 672
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 5/168 (2%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
R I N +I + +CG +E AR F EM+ER +WSAMI G G EAL F++
Sbjct: 233 RSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQ 292
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M + I+P +L AC ++G +D+G R+ ++ I +VD+ ++ G
Sbjct: 293 MQKEKIRPRKFVLPSVLSACANLGALDQG-RWIHTYAKRNSIQLDGVLGTSLVDMYAKCG 351
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
+ A+E M K W A++GG +H AE+A ++D
Sbjct: 352 RIDLAWEVFEKMSNKEVS-SWNAMIGGLAMHGR---AEDAIDLFSKMD 395
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 109/254 (42%), Gaps = 20/254 (7%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCG-----CLEGARRVFIEMEERTVFTWSAMIQG 55
+ H ++G ++ + +L+ Y E + RVF + + VF W+ MI+
Sbjct: 52 QAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKV 111
Query: 56 LAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP 115
+ + +A+ + +M+ +PN T+ +L AC G V EG + ++ ++G+
Sbjct: 112 CIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQ-VHAHLVKHGLGG 170
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
+ + + G L EA + + + + V W A++ G + EA+R+L
Sbjct: 171 DGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEV----EAAREL 226
Query: 176 DQLDP---LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHE- 231
+ P + + ++ ++S R V R+ + + WS++ +DG + E
Sbjct: 227 FEGMPDRSMISTWNAMISGF----SRCGMVEVAREFFDEMKERDEISWSAM-IDGYIQEG 281
Query: 232 -FVAGDETHPQAEK 244
F+ E Q +K
Sbjct: 282 CFMEALEIFHQMQK 295
>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
Length = 674
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 176/352 (50%), Positives = 246/352 (69%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H + G N+ V +++DMY KCG +E A R F +++E+ + +WSAMI G +HG
Sbjct: 323 RIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHG 382
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +EAL F +M G++PN +TFI +L AC H G +DEGR ++ +M E+GI +EHY
Sbjct: 383 RGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHY 442
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLL RAG L EAY I+ M +KP+ +WGALL CR+HKN++LAE + ++L +LD
Sbjct: 443 GCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDA 502
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+GY+V+LSNIYAEA W+DV R+R L++ ++K PG+SS + G ++ F GD++HP
Sbjct: 503 SNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHP 562
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q +I+ EKLL+ M+ GY+PNT VL D++E+EKE L HSEKLA+ F LMN+ P
Sbjct: 563 QHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPR 622
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ I I+KNLRVC DCH A K I++I REI++RD RFH F+ G CSC DYW
Sbjct: 623 SVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 674
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 7/165 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGC--LEGARRVFIEMEERTVFTWSAMIQGLAIH 59
+H + GF RN V NT++D Y K G LE AR+VF ME R V +W++MI A +
Sbjct: 220 LHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQN 278
Query: 60 GQAKEALTSFNKMIEI--GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
G + EA+ ++KM+ + GIK N V +L AC H G + G+R ++ G+ +
Sbjct: 279 GMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKR-IHNQVVRMGLEENV 337
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ S+ G ++ A R + K N + W A++ G +H
Sbjct: 338 YVGTSIVDMYSKCGRVEMASRAFRKIKEK-NILSWSAMITGYGMH 381
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 182/352 (51%), Positives = 257/352 (73%), Gaps = 4/352 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ ++ + + + +L+DMY KCG ++ A VF +M + V +W+AMI GLA+HG+
Sbjct: 325 IHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGR 384
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A++A+ F+KM I PN +TF+G+L+AC H G V +G F SM EYG+ PQIEHYG
Sbjct: 385 AEDAIDLFSKM---DIYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYG 441
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL RAG L EA + + ++P +P VWGALLG CR H N++L E + L +L+P
Sbjct: 442 CIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQ 501
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD-GVVHEFVAGDETHP 240
N+G + +LSNIYA+A RWE+V VRKLM+ G+K TPG S I + G VH+F+ GD +HP
Sbjct: 502 NSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHP 561
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q + I+QM +K+ + ++++GY P+ S VL DI+E+EKE +++HSEKLA+ FGL+NT PG
Sbjct: 562 QVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPG 621
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IRI+KNLRVCEDCH+A KLIS++ NREI+VRDR R+H F+ G+CSC D+W
Sbjct: 622 TTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 673
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 5/172 (2%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
R I N +I + +CG +E AR F EM+ER +WSAMI G G EAL F++
Sbjct: 234 RSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQ 293
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M + I+P +L AC ++G +D+G R+ ++ I +VD+ ++ G
Sbjct: 294 MQKEKIRPRKFVLPSVLSACANLGALDQG-RWIHTYAKRNSIQLDGVLGTSLVDMYAKCG 352
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183
+ A+E M K W A++GG +H AE+A ++D N
Sbjct: 353 RIDLAWEVFEKMSNKEVS-SWNAMIGGLAMHGR---AEDAIDLFSKMDIYPN 400
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 109/254 (42%), Gaps = 20/254 (7%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCG-----CLEGARRVFIEMEERTVFTWSAMIQG 55
+ H ++G ++ + +L+ Y E + RVF + + VF W+ MI+
Sbjct: 53 QAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKV 112
Query: 56 LAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP 115
+ + +A+ + +M+ +PN T+ +L AC G V EG + ++ ++G+
Sbjct: 113 CIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQ-VHAHLVKHGLGG 171
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
+ + + G L EA + + + + V W A++ G + EA+R+L
Sbjct: 172 DGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEV----EAAREL 227
Query: 176 DQLDP---LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHE- 231
+ P + + ++ ++S R V R+ + + WS++ +DG + E
Sbjct: 228 FEGMPDRSMISTWNAMISGF----SRCGMVEVAREFFDEMKERDEISWSAM-IDGYIQEG 282
Query: 232 -FVAGDETHPQAEK 244
F+ E Q +K
Sbjct: 283 CFMEALEIFHQMQK 296
>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/355 (52%), Positives = 247/355 (69%), Gaps = 4/355 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLI----DMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLA 57
+H + G + + N LI DMY+KCGC+E A VF MEE+ V +W+A+I GLA
Sbjct: 286 IHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLA 345
Query: 58 IHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
++G + +L F++M G+ PN +TF+G+L AC HMG VDEGR F SM ++GI P +
Sbjct: 346 VNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNV 405
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
+HYGCMVDLL RAG L EA + I +MP+ P+ WGALLG C+ H + ++ E R+L +
Sbjct: 406 KHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIE 465
Query: 178 LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDE 237
L P ++G+HV+LSNI+A WEDV VR +M+ GV KTPG S I +GVVHEF+AGD+
Sbjct: 466 LQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDK 525
Query: 238 THPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNT 297
THP K+ M ++ +K++GY P+T+ V LDI+E+EKE L+RHSEKLA+ FGL+
Sbjct: 526 THPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTI 585
Query: 298 PPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P TPIRIMKNLR+C DCH A KLIS+ REIVVRDR+RFH F+ G+CSC DYW
Sbjct: 586 SPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 640
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 49/223 (21%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIE--------------------- 40
+H++ + GF ++ V NTLI+MY CG + AR++F E
Sbjct: 151 IHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGD 210
Query: 41 -------------MEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGL 87
M+E+ + +WSA+I G +G +EAL F +M G++ + V + +
Sbjct: 211 MGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSV 270
Query: 88 LHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMV----DLLSRAGFLQEAYEFIRNM 143
L AC H+ V G + + + GI + ++ D+ + G ++ A E M
Sbjct: 271 LSACAHLSIVKTG-KMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGM 329
Query: 144 PIKPNGV-VWGALLGGCRVHKNIDLAEEASRQLDQLDPL-NNG 184
K GV W AL+ G V+ ++ R LD + NNG
Sbjct: 330 EEK--GVSSWNALIIGLAVNGLVE------RSLDMFSEMKNNG 364
>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
Length = 528
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 175/351 (49%), Positives = 245/351 (69%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G N+ V +++DMY KCG +E A R F +++E+ + +WSAMI G +HG+
Sbjct: 178 IHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGR 237
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL F +M G++PN +TFI +L AC H G +DEGR ++ +M E+GI +EHYG
Sbjct: 238 GQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYG 297
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L EAY I+ M +KP+ +WGALL CR+HKN++LAE + ++L +LD
Sbjct: 298 CMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDAS 357
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+GY+V+LSNIYAEA W+DV R+R L++ ++K PG+SS + G ++ F GD++HPQ
Sbjct: 358 NSGYYVLLSNIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQ 417
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I+ EKLL+ M+ GY+PNT VL D++E+EKE L HSEKLA+ F LMN+ P +
Sbjct: 418 HIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRS 477
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I I+KNLRVC DCH A K I++I REI++RD RFH F+ G CSC DYW
Sbjct: 478 VIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 528
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGC--LEGARRVFIEMEERTVFTWSAMIQGLAIH 59
+H + GF RN V NT++D Y K G LE AR+VF ME R V +W++MI A +
Sbjct: 74 LHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQN 132
Query: 60 GQAKEALTSFNKMIEI--GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
G + EA+ ++KM+ + GIK N V +L AC H G + G+ ++ G+ +
Sbjct: 133 GMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKH-IHNQVVRMGLEENV 191
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ S+ G ++ A R + K N + W A++ G +H
Sbjct: 192 YVGTSIVDMYSKCGRVEMASRAFRKIKEK-NILSWSAMITGYGMH 235
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 180/351 (51%), Positives = 246/351 (70%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ SG R + + + LIDMY KCG +E A VF + V TWSAMI G AIHGQ
Sbjct: 296 LHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQ 355
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A +A+ F KM + G++P+ V +I LL AC H G V+EGRR+F M + G+ P+IEHYG
Sbjct: 356 AGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYG 415
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL R+G L EA EFI NMPIKP+ V+W ALLG CR+ N+++ + + L + P
Sbjct: 416 CMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPH 475
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +V LSN+YA W +V+ +R M+ ++K PG S I +DGV+HEFV D++HP+
Sbjct: 476 DSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPK 535
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A++I M ++ D ++L GY P T+ VLL++EE++KE L+ HSEK+A FGL++T PG
Sbjct: 536 AKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGK 595
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLR+CEDCH++ KLIS++ R+I VRDR RFH FQ GSCSC DYW
Sbjct: 596 PIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 80/144 (55%), Gaps = 2/144 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N +ID Y++ G + AR +F +M +R+V +W+ MI G +++G K+A+ F +M + I+
Sbjct: 212 NVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIR 271
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
PN VT + +L A +G ++ G + + + GI ++D+ S+ G +++A
Sbjct: 272 PNYVTLVSVLPAISRLGSLELG-EWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIH 330
Query: 139 FIRNMPIKPNGVVWGALLGGCRVH 162
+P + N + W A++ G +H
Sbjct: 331 VFERLP-RENVITWSAMINGFAIH 353
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKE--ALTSFNKMI-EIGIKPNGVTFIGL 87
L+ A ++F +M +R F+W+ +I+G + + K A+T F +M+ + ++PN TF +
Sbjct: 75 LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSV 134
Query: 88 LHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKP 147
L AC G + EG++ + + +YG +V + GF+++A I+
Sbjct: 135 LKACAKTGKIQEGKQ-IHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEK 193
Query: 148 NGVV 151
+ VV
Sbjct: 194 DMVV 197
>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/352 (52%), Positives = 245/352 (69%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+HEY ++GF R ++V LIDMY KCG L+ A VF M R WSAMI AIHG
Sbjct: 244 MHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGH 303
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+A++ F +M + G +P+ +TF+GLL+AC H G V+EG +FY M +YG+IP I+HYG
Sbjct: 304 GLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYG 363
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L+EAYEFI +PI+P ++W LL C H N++L + Q+ +LD
Sbjct: 364 CMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDS 423
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G +++LSN+ A A RWEDV VRKLM GV K PG SS+ V+ VVHEF +GD H
Sbjct: 424 HGGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVHSV 483
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVL-LDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ K+ Q ++L+ +KL GY+PNTS+V D+E++EKE L HSEKLA+TFGL+NTPPG
Sbjct: 484 STKLHQALDELVKELKLVGYVPNTSLVFHADMEDEEKEVTLRYHSEKLAITFGLLNTPPG 543
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IR++KNLRVC DCH+A KLIS I +R+I++RD RFH F+ G CSC DYW
Sbjct: 544 TTIRVVKNLRVCGDCHSAAKLISLIFDRQIILRDVQRFHHFKDGKCSCEDYW 595
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 87/162 (53%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G N+ VC TLI+MY C ++ ARRVF ++ E V T++AMI G A
Sbjct: 142 QLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGS 201
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EAL+ F ++ +KP VT + +L +C +G +D G ++ + + G ++
Sbjct: 202 RPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLG-KWMHEYVKKNGFNRFVKVD 260
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++ G L +A NM ++ + W A++ +H
Sbjct: 261 TALIDMYAKCGSLDDAVCVFENMAVR-DTQAWSAMIMAYAIH 301
>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g26782, mitochondrial; Flags: Precursor
gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 177/351 (50%), Positives = 248/351 (70%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ + G ++ V ++IDMY KCG +E AR+ F M+ + V +W+AMI G +HG
Sbjct: 309 IHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGH 368
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A +AL F MI+ G++PN +TF+ +L AC H G EG R+F +M +G+ P +EHYG
Sbjct: 369 AAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYG 428
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAGFLQ+AY+ I+ M +KP+ ++W +LL CR+HKN++LAE + +L +LD
Sbjct: 429 CMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSS 488
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+++LS+IYA+A RW+DV RVR +M+N G+ K PG+S + ++G VH F+ GDE HPQ
Sbjct: 489 NCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQ 548
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
EKI++ +L + GY+ NTS V D++E+EKE L HSEKLA+ FG+MNT PG+
Sbjct: 549 REKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGS 608
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ ++KNLRVC DCH KLIS+IV+RE VVRD RFH F+ G CSCGDYW
Sbjct: 609 TVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/316 (21%), Positives = 134/316 (42%), Gaps = 65/316 (20%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H+ + G++ +I V + LI MY CG LE AR+VF E+ +R + +W++MI+G ++G
Sbjct: 97 QTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNG 156
Query: 61 QAKEALTSFNKMI------EIGIKPNGVTFIGLLHACGHM---GWVDEGRRFF------- 104
A +A++ F ++ + + + + + ++ AC + G + F
Sbjct: 157 NALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDR 216
Query: 105 -----------YSMTTEYG------IIPQI-----EHYGCMVDLLSRAGFLQEAYE---- 138
Y+ E G I QI Y ++ + +++G EA+E
Sbjct: 217 GVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRR 276
Query: 139 FIRNMPIKPNGVVWGALL------GGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNI 192
++N + N + +L G R+ K I + ++ D + G ++ ++
Sbjct: 277 LVKNKVVTFNAITLSTVLLAVSHSGALRIGKCI---HDQVIRMGLEDDVIVGTSII--DM 331
Query: 193 YAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKL 252
Y + R E + M+N V+ W+++ +AG H A K +++ +
Sbjct: 332 YCKCGRVETARKAFDRMKNKNVR---SWTAM---------IAGYGMHGHAAKALELFPAM 379
Query: 253 LDGMKLKGYIPNTSVV 268
+D YI SV+
Sbjct: 380 IDSGVRPNYITFVSVL 395
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 41 MEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG 100
+++ VF+W+++I LA G + EAL +F+ M ++ + P +F + AC + + G
Sbjct: 36 VDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSG 95
Query: 101 RRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCR 160
++ + +G I ++ + S G L++A + +P K N V W +++ G
Sbjct: 96 KQ-THQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP-KRNIVSWTSMIRGYD 153
Query: 161 VHKN 164
++ N
Sbjct: 154 LNGN 157
>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
Length = 590
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/352 (52%), Positives = 242/352 (68%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H Y + +GF+ N + L+DMY KCG ++ A RVF+E + + + TWS MI G AIHG
Sbjct: 239 RIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHG 298
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+AL F KM GI P+ V F+ +L AC H G VD+G FF SM +Y I P ++HY
Sbjct: 299 CFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHY 358
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+VDLL RAG L EA FI++MPI P+ V+WGAL CR HKNI++AE + +L QL+P
Sbjct: 359 TLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEP 418
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ G +V LSN+YA RWEDV RVR LM+N GV+K PGWS I V+G VH FVAGD H
Sbjct: 419 KHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHV 478
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+AE+I E++ K +GY+P T+ VL +IEE+EKE L HSEKLAL FGL++T PG
Sbjct: 479 RAEEISLKLEEITASAKQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPG 538
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ IRI+KNLRVC DCH+ K S++ REI++RD RFH F+ G+CSCGDYW
Sbjct: 539 STIRIVKNLRVCGDCHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 590
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 84/205 (40%), Gaps = 13/205 (6%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N RV LI L+ A +F + +F ++A+I+GLA + + + +++ F M+
Sbjct: 71 NSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLML 130
Query: 74 EIGIKPNGVTFIGLLHA-----------CGHMGWVDEGRRF-FYSMTTEYGIIPQIEHYG 121
+ I+P+ +T +L + C H G + G F + + + +I G
Sbjct: 131 RLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELG 190
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD-P 180
+ L + +A + ++PN + + L C + + E L
Sbjct: 191 FGLQLFDESPQRNKAESILLWNGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQ 250
Query: 181 LNNGYHVVLSNIYAEAERWEDVARV 205
LN G L ++YA+ + +RV
Sbjct: 251 LNRGIGTALVDMYAKCGNIKSASRV 275
>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
Length = 659
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 177/351 (50%), Positives = 248/351 (70%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ + G ++ V ++IDMY KCG +E AR+ F M+ + V +W+AMI G +HG
Sbjct: 309 IHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGH 368
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A +AL F MI+ G++PN +TF+ +L AC H G EG R+F +M +G+ P +EHYG
Sbjct: 369 AAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYG 428
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAGFLQ+AY+ I+ M +KP+ ++W +LL CR+HKN++LAE + +L +LD
Sbjct: 429 CMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSS 488
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+++LS+IYA+A RW+DV RVR +M+N G+ K PG+S + ++G VH F+ GDE HPQ
Sbjct: 489 NCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQ 548
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
EKI++ +L + GY+ NTS V D++E+EKE L HSEKLA+ FG+MNT PG+
Sbjct: 549 REKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGS 608
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ ++KNLRVC DCH KLIS+IV+RE VVRD RFH F+ G CSCGDYW
Sbjct: 609 TVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/316 (21%), Positives = 134/316 (42%), Gaps = 65/316 (20%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H+ + G++ +I V + LI MY CG LE AR+VF E+ +R + +W++MI+G ++G
Sbjct: 97 QTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNG 156
Query: 61 QAKEALTSFNKMI------EIGIKPNGVTFIGLLHACGHM---GWVDEGRRFF------- 104
A +A++ F ++ + + + + + ++ AC + G + F
Sbjct: 157 NALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDR 216
Query: 105 -----------YSMTTEYG------IIPQI-----EHYGCMVDLLSRAGFLQEAYE---- 138
Y+ E G I QI Y ++ + +++G EA+E
Sbjct: 217 GVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRR 276
Query: 139 FIRNMPIKPNGVVWGALL------GGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNI 192
++N + N + +L G R+ K I + ++ D + G ++ ++
Sbjct: 277 LVKNKVVTFNAITLSTVLLAVSHSGALRIGKCI---HDQVIRMGLEDDVIVGTSII--DM 331
Query: 193 YAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKL 252
Y + R E + M+N V+ W+++ +AG H A K +++ +
Sbjct: 332 YCKCGRVETARKAFDRMKNKNVR---SWTAM---------IAGYGMHGHAAKALELFPAM 379
Query: 253 LDGMKLKGYIPNTSVV 268
+D YI SV+
Sbjct: 380 IDSGVRPNYITFVSVL 395
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 41 MEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG 100
+++ VF+W+++I LA G + EAL +F+ M ++ + P +F + AC + + G
Sbjct: 36 VDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSG 95
Query: 101 RRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCR 160
++ + +G I ++ + S G L++A + +P K + V W +++ G
Sbjct: 96 KQ-THQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP-KRDIVSWTSMIRGYD 153
Query: 161 VHKN 164
++ N
Sbjct: 154 LNGN 157
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 173/351 (49%), Positives = 252/351 (71%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y+ ++ R + + + L+DMY KCG +E A +VF + + V TW+A+I GLA+HG+
Sbjct: 288 VHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGK 347
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A + ++M + GI P+ VT+I +L AC H G VDEGR FF M G+ P+IEHYG
Sbjct: 348 ANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYG 407
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG+L+EA E I NMP+KP+ V+W ALLG ++HKNI + A+ L Q+ P
Sbjct: 408 CMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPH 467
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +V LSN+YA + W+ VA VR +M+++ ++K PG S I +DGV+HEF+ D++H +
Sbjct: 468 DSGAYVALSNMYASSGNWDGVAAVRLMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSR 527
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A+ I M E++ + + L+G++P+T+ VLL ++EK KE L+ HSEK+A+ FGL++TPP T
Sbjct: 528 AKDIHSMLEEISNKLSLEGHMPDTTQVLLKMDEKHKESVLHYHSEKIAVAFGLISTPPKT 587
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P+ I+KNLR+CEDCH++ KLIS++ R+IV+RDR RFH F+ GSCSC DYW
Sbjct: 588 PLCIVKNLRICEDCHSSMKLISKMYERKIVIRDRKRFHHFEHGSCSCMDYW 638
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 92/158 (58%), Gaps = 5/158 (3%)
Query: 7 NQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEAL 66
++ G N+ +CN ++D Y + G L+ AR +F M +R+V +W+ MI G A +G KEA+
Sbjct: 191 DERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAI 250
Query: 67 TSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG-CMV 124
F++M+++G + PN VT + +L A +G ++ G+ + + E I + G +V
Sbjct: 251 EIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGK--WVHLYAEKNKIRIDDVLGSALV 308
Query: 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
D+ ++ G +++A + +P + N + W A++GG +H
Sbjct: 309 DMYAKCGSIEKAIQVFERLP-QNNVITWNAVIGGLAMH 345
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLA-IHGQAKEALTSFNKMI-EIGIKPNGVTFIGLLHAC 91
A VF ++ ER F W+ +I+ LA + +AL F +M+ E ++PN TF +L AC
Sbjct: 68 ALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKAC 127
Query: 92 GHMGWVDEGRRFFYSMTTEYGII 114
M + EG++ + + ++G++
Sbjct: 128 AVMARLAEGKQ-VHGLLLKFGLV 149
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 180/352 (51%), Positives = 241/352 (68%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H Y QSGF +I V + L+DMY K G +E A +VF +M +R +W+++I G A HG
Sbjct: 163 QFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHG 222
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +A+ F +M++ GIKPN ++F+G+L AC H G V+EGR +F MT YGI+P + HY
Sbjct: 223 RGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHY 282
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DLL RAG L EA FI MP++P+ VWGALLG CR+H N +LA+ + L ++
Sbjct: 283 TCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEV 342
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
G +V+LSNIYA A +W+D A+VRKLM++ GV K PG+S I V ++H FVAG+ +HP
Sbjct: 343 QIAGIYVLLSNIYAAAGQWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHP 402
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q ++I + E L MK GY+PN + VL D+E+ EKE L HSEKLA+ FG++NT PG
Sbjct: 403 QLKEIHEFLESLSRKMKAAGYVPNKNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTNPG 462
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IR+ KNLRVC DCH K IS R+IVVRD NRFH F+ G CSCGDYW
Sbjct: 463 TTIRVAKNLRVCGDCHTVIKFISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 33/193 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF---------------------- 38
+ H Y + GF ++ V L+ MY +CG LE A VF
Sbjct: 31 QAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVFDKMSERSTRTWNAMITGHAQNR 90
Query: 39 ---------IEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH 89
EM ER V +W+A+I G A +G E+L FN+M + G+K + +L
Sbjct: 91 DMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLS 150
Query: 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNG 149
AC + ++ GR+ F++ + G I +VD+ +++G +++A + MP + N
Sbjct: 151 ACADLAALELGRQ-FHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMP-QRNE 208
Query: 150 VVWGALLGGCRVH 162
V W +++ GC H
Sbjct: 209 VSWNSIITGCAQH 221
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/352 (52%), Positives = 242/352 (68%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H Y + +GF+ N + L+DMY KCG ++ A RVF+E + + + TWS MI G AIHG
Sbjct: 326 RIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHG 385
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+AL F KM GI P+ V F+ +L AC H G VD+G FF SM +Y I P ++HY
Sbjct: 386 CFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHY 445
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+VDLL RAG L EA FI++MPI P+ V+WGAL CR HKNI++AE + +L QL+P
Sbjct: 446 TLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEP 505
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ G +V LSN+YA RWEDV RVR LM+N GV+K PGWS I V+G VH FVAGD H
Sbjct: 506 KHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHV 565
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+AE+I E++ K +GY+P T+ VL +IEE+EKE L HSEKLAL FGL++T PG
Sbjct: 566 RAEEISLKLEEITASAKQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPG 625
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ IRI+KNLRVC DCH+ K S++ REI++RD RFH F+ G+CSCGDYW
Sbjct: 626 STIRIVKNLRVCGDCHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 677
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 83/156 (53%), Gaps = 2/156 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN N+LI+ +V+ G L+ AR +F++M E+ V +W+ MI G + +G ++AL+ F +M
Sbjct: 237 RNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRM 296
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+E G++PN +T + L AC +G + G R ++ + G +VD+ ++ G
Sbjct: 297 LEEGVRPNDLTVVSALLACTKIGALQVGER-IHNYLSSNGFQLNRGIGTALVDMYAKCGN 355
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++ A K + + W ++ G +H D A
Sbjct: 356 IKSASRVFVETKGK-DLLTWSVMIWGWAIHGCFDQA 390
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 110/250 (44%), Gaps = 24/250 (9%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N RV LI L+ A +F + +F ++A+I+GLA + + + +++ F M+
Sbjct: 71 NSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLML 130
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRF---FYSMTTEYGIIPQIEHYGCMVDLLSRA 130
+ I+P+ +T +L + + V GR + E+ ++ +VD+ +
Sbjct: 131 RLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVS----LVDMYVKI 186
Query: 131 GFLQEAYEFIRNMPIKPNG---VVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV 187
G L + P + ++W L+ GC K DL++ AS + + N G
Sbjct: 187 GELGFGLQLFDESPQRNKAESILLWNVLINGC--CKVGDLSKAAS-LFEAMPERNAGSWN 243
Query: 188 VLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQ 247
L N + R D+ R R+L + K W+++ ++G GD H +A +F
Sbjct: 244 SLINGFV---RNGDLDRARELFVQMPEKNVVSWTTM-INGFSQN---GD--HEKALSMF- 293
Query: 248 MWEKLLDGMK 257
W L +G++
Sbjct: 294 -WRMLEEGVR 302
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/352 (51%), Positives = 248/352 (70%), Gaps = 1/352 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H ++ F ++ V LI MY KCG +E A +VF ++ ++ V++W++MI G A HG
Sbjct: 636 RLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHG 695
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ KEAL F +M + G+KP+ +TF+G L AC H G ++EG F SM E+ I P++EHY
Sbjct: 696 RGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMK-EFNIEPRMEHY 754
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDL RAG L EA EFI M ++P+ VWGALLG C+VH N++LAE+A+++ +LDP
Sbjct: 755 GCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDP 814
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+NG V+LSNIYA A W++VA++RK+M + GV K PG S I VDG VH F + D+THP
Sbjct: 815 NDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHP 874
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q E+I E+L M+ GY+P+T VL D+E+ EKE+ L+ HSE+LA+T+GL+ TPP
Sbjct: 875 QTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTPPL 934
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPI I KNLRVC DCH A K IS+I R+I+ RD NRFH F+ G CSCGD+W
Sbjct: 935 TPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++G ++ V N L+ M+V CG L A+ +F +M +R + +W+ +I G HG+
Sbjct: 536 VHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGK 595
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ A F M E GIKP+ +TF GLL+AC + EGRR +++ TE +
Sbjct: 596 NQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRR-LHALITEAAFDCDVLVGT 654
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
++ + ++ G +++A++ +P K N W +++ G H A E Q+ Q
Sbjct: 655 GLISMYTKCGSIEDAHQVFHKLP-KKNVYSWTSMIAGYAQHGRGKEALELFYQMQQ 709
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 4/169 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + G+ I V ++ MY KCG +E A VF ++ R V +W+AMI G A HG
Sbjct: 333 KVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHG 392
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEH 119
+ EA FNKMIE GI+PN VTF+ +L AC + G++ + + YG ++
Sbjct: 393 RIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR- 451
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++ + ++ G L++A+ + K N V W A++ H+ D A
Sbjct: 452 -TALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQHEQYDNA 498
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 92/161 (57%), Gaps = 2/161 (1%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
++G+ ++ V LI+M++KCG + A +VF + R + TW++MI GLA HG+ K+A
Sbjct: 239 KAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACN 298
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F +M E G++P+ V F+ LL AC H +++G++ M E G +I ++ +
Sbjct: 299 LFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARM-KEVGWDTEIYVGTAILSMY 357
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++ G +++A E + ++ N V W A++ G H ID A
Sbjct: 358 TKCGSMEDALE-VFDLVKGRNVVSWTAMIAGFAQHGRIDEA 397
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 92/162 (56%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R++ + +SG + +I + NTLI+MY KCG A+++F +M E+ V++W+ ++ G HG
Sbjct: 131 RIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHG 190
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA +M++ +KP+ TF+ +L+AC VD+GR Y++ + G +
Sbjct: 191 LYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRE-LYNLILKAGWDTDLFVG 249
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++++ + G + +A + N+P + + V W +++ G H
Sbjct: 250 TALINMHIKCGDIGDATKVFDNLPTR-DLVTWTSMITGLARH 290
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++ ++ ++G+ + RV L+ MY KCG L+ A RVF ++ ++ V W+AMI H
Sbjct: 434 QIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHE 493
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q AL +F +++ GIKPN TF +L+ C ++ G ++ + + + G+ +
Sbjct: 494 QYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELG-KWVHFLIMKAGLESDLHVS 552
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+V + G L A +MP K + V W ++ G H
Sbjct: 553 NALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQH 593
>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 180/351 (51%), Positives = 248/351 (70%), Gaps = 1/351 (0%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM-EERTVFTWSAMIQGLAIHGQ 61
H Y ++ G ++ + LIDMY KCG +E A VF + + V WSAMI GLA+HG
Sbjct: 191 HAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGL 250
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+E + F+KMI G++PN VTF+ + AC H G V EG+ + MT +Y IIP I+HYG
Sbjct: 251 AEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYG 310
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL RAG ++EA+ +++MP++P+ +VWGALL G R+H +I+ E A ++L +L+P
Sbjct: 311 CMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPT 370
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +V+LSN+YA+ RWEDV VR LM +G+KK PG S I V GV+HEF GD++HP+
Sbjct: 371 NSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHPE 430
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I M E++L+ +K++GY+ NT VLLD++E+ KE L HSEKLAL +G + T PGT
Sbjct: 431 TRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSLHSEKLALAYGFLKTSPGT 490
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLR+C DCH A K+IS++ +REI+VRD NRFH F G CSC DYW
Sbjct: 491 PIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 541
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 129/288 (44%), Gaps = 18/288 (6%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + G + V +LI MY G ++ AR +F M ER V +WS MI G GQ
Sbjct: 86 VHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQ 145
Query: 62 AKEALTSFNKMIEIG---IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
KEAL F +M +G ++PN T G+L ACG +G ++ G ++ ++ + G+ +
Sbjct: 146 YKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHG-KWAHAYIDKCGMPVDVV 204
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA----SRQ 174
++D+ ++ G +++A N+ + + W A++ G +H LAEE S+
Sbjct: 205 LGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMH---GLAEECVGLFSKM 261
Query: 175 LDQ-LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD-----GV 228
++Q + P + V E +R++ + + T VD G
Sbjct: 262 INQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGR 321
Query: 229 VHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKE 276
+ E ++ P + +W LL G ++ G I + L + E E
Sbjct: 322 IKEAWNVVKSMPMEPDVL-VWGALLSGSRMHGDIETCELALKKLIELE 368
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 175/353 (49%), Positives = 252/353 (71%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ HEY ++ N+ + ++DMY +CG +E A VF ++ E+ V W+A+I GLA+HG
Sbjct: 270 KAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHG 329
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A++AL F++M + G P +TF +L AC H G V+ G F SM ++G+ P++EHY
Sbjct: 330 YAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHY 389
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLL RAG L++A +F+ MP+KPN +W ALLG CR+HKN+++ E + L ++ P
Sbjct: 390 GCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQP 449
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+G++V+LSNIYA A +W+DV +R++M++ GV+K PG+S I +DG VHEF GD+THP
Sbjct: 450 EYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHEFTIGDKTHP 509
Query: 241 QAEKIFQMWEK-LLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
+ EKI ++WE +L +KL GY+ NT+ + DI+E+EKE L+RHSEKLA+ +G+M
Sbjct: 510 EIEKIERIWEDIILPKIKLAGYVGNTAETMFDIDEEEKEGALHRHSEKLAIAYGIMKIRA 569
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPIRI+KNLRVCEDCH A KLIS++ E++VRDRNRFH F+ G+CSC DYW
Sbjct: 570 PTPIRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRFHHFKEGTCSCMDYW 622
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 73/143 (51%), Gaps = 4/143 (2%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
+I Y +CG + AR +F M ER + TWS MI G A + ++A+ +F + G+ N
Sbjct: 189 MIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVAN 248
Query: 81 GVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEF 139
+G++ +C H+G + G + Y M + + + +VD+ +R G +++A
Sbjct: 249 ETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSL--NLILGTAVVDMYARCGNVEKAVMV 306
Query: 140 IRNMPIKPNGVVWGALLGGCRVH 162
+P K + + W AL+ G +H
Sbjct: 307 FEQLPEK-DVLCWTALIAGLAMH 328
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/352 (51%), Positives = 248/352 (70%), Gaps = 1/352 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H ++ F ++ V LI MY KCG +E A +VF ++ ++ V++W++MI G A HG
Sbjct: 636 RLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHG 695
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ KEAL F +M + G+KP+ +TF+G L AC H G ++EG F SM E+ I P++EHY
Sbjct: 696 RGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMK-EFNIEPRMEHY 754
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDL RAG L EA EFI M ++P+ VWGALLG C+VH N++LAE+A+++ +LDP
Sbjct: 755 GCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDP 814
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+NG V+LSNIYA A W++VA++RK+M + GV K PG S I VDG VH F + D+THP
Sbjct: 815 NDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHP 874
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q E+I E+L M+ GY+P+T VL D+E+ EKE+ L+ HSE+LA+T+GL+ TPP
Sbjct: 875 QTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTPPL 934
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPI I KNLRVC DCH A K IS+I R+I+ RD NRFH F+ G CSCGD+W
Sbjct: 935 TPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++G ++ V N L+ M+V CG L A+ +F +M +R + +W+ +I G HG+
Sbjct: 536 VHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGK 595
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ A F M E GIKP+ +TF GLL+AC + EGRR +++ TE +
Sbjct: 596 NQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRR-LHALITEAAFDCDVLVGT 654
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
++ + ++ G +++A++ +P K N W +++ G H A E Q+ Q
Sbjct: 655 GLISMYTKCGSIEDAHQVFHKLP-KKNVYSWTSMITGYAQHGRGKEALELFYQMQQ 709
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 4/169 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + G+ I V ++ MY KCG +E A VF ++ R V +W+AMI G A HG
Sbjct: 333 KVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHG 392
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEH 119
+ EA FNKMIE GI+PN VTF+ +L AC + G++ + + YG ++
Sbjct: 393 RIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR- 451
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++ + ++ G L++A+ + K N V W A++ H+ D A
Sbjct: 452 -TALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQHEQYDNA 498
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 92/161 (57%), Gaps = 2/161 (1%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
++G+ ++ V LI+M++KCG + A +VF + R + TW++MI GLA HG+ K+A
Sbjct: 239 KAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACN 298
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F +M E G++P+ V F+ LL AC H +++G++ M E G +I ++ +
Sbjct: 299 LFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARM-KEVGWDTEIYVGTAILSMY 357
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++ G +++A E + ++ N V W A++ G H ID A
Sbjct: 358 TKCGSMEDALE-VFDLVKGRNVVSWTAMIAGFAQHGRIDEA 397
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 92/162 (56%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R++ + +SG + +I + NTLI+MY KCG A+++F +M E+ V++W+ ++ G HG
Sbjct: 131 RIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHG 190
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA +M++ +KP+ TF+ +L+AC VD+GR Y++ + G +
Sbjct: 191 LYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRE-LYNLILKAGWDTDLFVG 249
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++++ + G + +A + N+P + + V W +++ G H
Sbjct: 250 TALINMHIKCGDIGDATKVFDNLPTR-DLVTWTSMITGLARH 290
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++ ++ ++G+ + RV L+ MY KCG L+ A RVF ++ ++ V W+AMI H
Sbjct: 434 QIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHE 493
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q AL +F +++ GIKPN TF +L+ C ++ G ++ + + + G+ +
Sbjct: 494 QYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELG-KWVHFLIMKAGLESDLHVS 552
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+V + G L A +MP K + V W ++ G H
Sbjct: 553 NALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQH 593
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 183/352 (51%), Positives = 240/352 (68%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + G N + ++L+DMY KCG LE A VF +EER V+ WSAMI GL +HG+
Sbjct: 382 IHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGR 441
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K A+ F +M E +KPN VTF +L AC H G VDEGR FF+ M YG++P+++HY
Sbjct: 442 GKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYA 501
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+L RAGFL+EA E I M P+ VWGALLG C +H N++L E AS QL +L+P
Sbjct: 502 CMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPR 561
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G V+LSNIYA+ RWE V+ +RKLMR+ +KK PG SSI +G VHEF+ GD THP
Sbjct: 562 NHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPL 621
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKE-KEKFLYRHSEKLALTFGLMNTPPG 300
+ I+ E++ +K GY PN S +L IEE + KE+ L HSEKLA+ FGL+ P
Sbjct: 622 SSNIYSKLEEIATKLKSVGYEPNKSHLLQLIEEDDLKEQALSLHSEKLAIAFGLVTLAPS 681
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR++KNLR+C DCHA KL+S + +R+I++RDR RFH F+ G CSC DYW
Sbjct: 682 QPIRVVKNLRICGDCHAFAKLVSRVYDRDILLRDRYRFHHFRDGHCSCMDYW 733
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 34/193 (17%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAI--- 58
V Y + G + ++ +CN ++DMY KCG ++ A+++F EM ER VF+W+ M+ G A
Sbjct: 249 VCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGD 308
Query: 59 ----------------------------HGQAKEALTSFNKMIEIGI-KPNGVTFIGLLH 89
+G+ KEAL FN++ I KP+ VT + L
Sbjct: 309 YDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLS 368
Query: 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNG 149
AC +G +D G + E GI+ +VD+ ++ G L++A E ++ + +
Sbjct: 369 ACAQLGAIDLGGWIHVYIKRE-GIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEER-DV 426
Query: 150 VVWGALLGGCRVH 162
VW A++ G +H
Sbjct: 427 YVWSAMIAGLGMH 439
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + F ++ + N+L+ Y CG L A R+F + + V +W++MI A
Sbjct: 148 VHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNC 207
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL F KM + PN VT +G+L AC ++ G R+ S GI +
Sbjct: 208 PEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFG-RWVCSYIERKGIKVDLTLCN 266
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
M+D+ ++ G + +A + MP + + W +L G
Sbjct: 267 AMLDMYTKCGSVDDAQKLFDEMPER-DVFSWTIMLDG 302
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 176/352 (50%), Positives = 245/352 (69%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y N++ R + + LIDMY KCG +E A VF +++++V W+A+I G A HG
Sbjct: 269 IHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGH 328
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA++ F +M ++GIKPN +TF +L AC + G V+EG+ FYSM +Y + P IEHYG
Sbjct: 329 GREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYG 388
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL RAG L EA FI+ MP+KPN V+WGALL CR+HKNI+L EE L +DP
Sbjct: 389 CIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPY 448
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G +V +NI+A ++W+ A R+LM+ GV K PG S+I+++G HEF+AGD +HP+
Sbjct: 449 HGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPE 508
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLD-IEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
EKI W + ++ GY+P +LLD +++ E+E +++HSEKLA+T+GL+ T PG
Sbjct: 509 IEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPG 568
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IRIMKNLRVC+DCH KLIS+I R+IV+RDR RFH F+ G CSCGDYW
Sbjct: 569 TIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 75/145 (51%), Gaps = 4/145 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N++I YVK G ++ A +F +M E+ +W+ MI G KEAL F++M ++
Sbjct: 185 NSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVE 244
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC-MVDLLSRAGFLQEAY 137
P+ V+ L AC +G +++G+ + + + GC ++D+ ++ G ++EA
Sbjct: 245 PDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSV--LGCVLIDMYAKCGEMEEAL 302
Query: 138 EFIRNMPIKPNGVVWGALLGGCRVH 162
E +N+ K + W AL+ G H
Sbjct: 303 EVFKNIK-KKSVQAWTALISGYAYH 326
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 87/185 (47%), Gaps = 5/185 (2%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90
L A+ VF + F W+ MI+G + + + +L + +M+ N TF LL A
Sbjct: 65 LPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKA 124
Query: 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGV 150
C ++ +E + ++ T+ G + +++ + G + A+ +P +P+ V
Sbjct: 125 CSNLSAFEETTQ-IHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIP-EPDDV 182
Query: 151 VWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMR 210
W +++ G +D+A R++ + + ++ + ++S Y +A+ ++ ++ M+
Sbjct: 183 SWNSVIKGYVKAGKMDIALTLFRKMAEKNAIS--WTTMISG-YVQADMNKEALQLFHEMQ 239
Query: 211 NLGVK 215
N V+
Sbjct: 240 NSDVE 244
>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
Length = 1130
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 180/351 (51%), Positives = 248/351 (70%), Gaps = 1/351 (0%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM-EERTVFTWSAMIQGLAIHGQ 61
H Y ++ G ++ + LIDMY KCG +E A VF + + V WSAMI GLA+HG
Sbjct: 222 HAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGL 281
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+E + F+KMI G++PN VTF+ + AC H G V EG+ + MT +Y IIP I+HYG
Sbjct: 282 AEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYG 341
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL RAG ++EA+ +++MP++P+ +VWGALL G R+H +I+ E A ++L +L+P
Sbjct: 342 CMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPT 401
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +V+LSN+YA+ RWEDV VR LM +G+KK PG S I V GV+HEF GD++HP+
Sbjct: 402 NSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHPE 461
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I M E++L+ +K++GY+ NT VLLD++E+ KE L HSEKLAL +G + T PGT
Sbjct: 462 TRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSLHSEKLALAYGFLKTSPGT 521
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLR+C DCH A K+IS++ +REI+VRD NRFH F G CSC DYW
Sbjct: 522 PIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 572
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 84/155 (54%), Gaps = 7/155 (4%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG-- 76
N++I+ + G ++ AR +F M ER V +WS MI G GQ KEAL F +M +G
Sbjct: 134 NSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVN 193
Query: 77 -IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE 135
++PN T G+L ACG +G ++ G ++ ++ + G+ + ++D+ ++ G +++
Sbjct: 194 DVRPNEFTMSGVLAACGRLGALEHG-KWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEK 252
Query: 136 AYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
A N+ + + W A++ G +H LAEE
Sbjct: 253 ATWVFSNLGPNKDVMAWSAMISGLAMH---GLAEE 284
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 170/351 (48%), Positives = 252/351 (71%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+Y ++ ++ + N+LIDM+ KCG ++ A+R+F M + + +W++M+ GLA+HG
Sbjct: 304 VHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGL 363
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL F+ M ++P+ +TFIG+L AC H G V EG++ FY + YG+ + EHYG
Sbjct: 364 GREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYG 423
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L EA EFIR MP++P+G +WG++LG CRV+ N++L EEA+R L +L+P
Sbjct: 424 CMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPT 483
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +++LSNIYA + W +V +VR+LM G++KTPG SS+ +D + H F+AGD +HP+
Sbjct: 484 NDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPE 543
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I M ++ + +KL GY+ +TS VLL+I++ +KE+ + +HSEKLAL +GL+ + G
Sbjct: 544 IAEISIMLRQVREKLKLVGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIGG 603
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I I+KNLRVC DCH KL+S+I R+I +RDRNRFH F+ GSCSC DYW
Sbjct: 604 RIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 85/155 (54%), Gaps = 9/155 (5%)
Query: 14 NIRVC----NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
++++C + L++MY KCG L+ AR+VF ++ ++ V+ WSA+I G + ++ EAL F
Sbjct: 210 DMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLF 269
Query: 70 NKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLL 127
++ ++PN VT + ++ AC +G ++ GR Y T+ G + ++D+
Sbjct: 270 REVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKG--HSVSLNNSLIDMF 327
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
S+ G + A +M K + + W +++ G +H
Sbjct: 328 SKCGDIDAAKRIFDSMSYK-DLISWNSMVNGLALH 361
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 2/145 (1%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ + TL++MY CG L+ AR +F M R W++MI G + EAL + KM
Sbjct: 113 DLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKME 172
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
E G P+ VT L+ AC + + G + +S E + +V++ ++ G L
Sbjct: 173 EDGFSPDEVTMATLVSACAELKDLGVGMK-LHSHIREMDMKICAVLGSALVNMYAKCGDL 231
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGG 158
+ A + + K + W AL+ G
Sbjct: 232 KTARQVFDQLSDK-DVYAWSALIFG 255
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust.
Identities = 172/352 (48%), Positives = 245/352 (69%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R H+Y ++ N+ + L+DMY +CG ++ A VF ++ R +W+ +I G A+HG
Sbjct: 266 RAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHG 325
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A++AL F++M + G+ P +TF +L AC H G V+ G F SM +Y I P++EHY
Sbjct: 326 YAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHY 385
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLL RAG L EA +F+ MP+KPN +WGALLG CR+HKN ++AE A + L +L P
Sbjct: 386 GCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELKP 445
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++GY+V+LSNIYA +WE+V +R++M+ GV K PG++ +DG VH+F GD+THP
Sbjct: 446 EHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIGDKTHP 505
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ ++I +MWE++L ++L GY N L DI+E+EKE ++RHSEKLA+ + +M T
Sbjct: 506 EIQQIERMWEEILGKIRLAGYTGNNDDALFDIDEEEKESNIHRHSEKLAIAYAIMRTKGH 565
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVCEDCH A KLIS++ RE++VRDRNRFH F+ G+CSC DYW
Sbjct: 566 DPIRIVKNLRVCEDCHTATKLISKVYERELIVRDRNRFHHFKGGACSCMDYW 617
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 88/186 (47%), Gaps = 8/186 (4%)
Query: 11 FRR----NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEAL 66
FRR ++ +++ Y+K G + AR++F +M E+ + TWS MI G A + +A+
Sbjct: 171 FRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAI 230
Query: 67 TSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126
+ + G+ N + ++ +C H+G ++ G R + + + +VD+
Sbjct: 231 ELYFLLQSEGVHANETVMVSVIASCAHLGALELGER-AHDYILRNKMTVNLILGTALVDM 289
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ--LDPLNNG 184
+R G + +A +P + + + W L+ G +H + A E ++++ L P
Sbjct: 290 YARCGSIDKAIWVFDQLPGR-DALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREIT 348
Query: 185 YHVVLS 190
+ VLS
Sbjct: 349 FTAVLS 354
>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330-like [Cucumis
sativus]
Length = 712
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 176/352 (50%), Positives = 248/352 (70%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y ++GF NI + ++L+DMY KCG + A+++F M R + +W+AMI G A+HG
Sbjct: 361 QLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHG 420
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
QA +A+ F +M GIKPN V F+ +L AC H G VDE ++F SMT ++GI P +EHY
Sbjct: 421 QAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHY 480
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+ DLL RAG L+EAY+FI M I P G +W LL CRVH NID+AE+ + ++ ++DP
Sbjct: 481 AAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDP 540
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +++L+NIY+ A RW++ A+ R MR +G++KTP S I V V+ F+AGDE+HP
Sbjct: 541 NNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHP 600
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
EKI + E L++ M+ +GY+P+TS V D+EE++K+ + HSE+LA+ FG++NTP G
Sbjct: 601 CYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAG 660
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR+ KNLRVC DCH A K IS+IV REIVVRD +RFH F+ G+CSCGDYW
Sbjct: 661 MTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 712
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 95/191 (49%), Gaps = 4/191 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H S + G +I V ++LIDMY KC + + RVF + ER +W+++I G +G
Sbjct: 261 IHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGL 320
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
E L F +M+ IKP +F ++ AC H+ + G++ + T G I
Sbjct: 321 FDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQ-LHGYITRNGFDENIFIAS 379
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ--LD 179
+VD+ ++ G ++ A + M ++ + V W A++ GC +H A E Q++ +
Sbjct: 380 SLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGCALHGQAPDAIELFEQMETEGIK 438
Query: 180 PLNNGYHVVLS 190
P + + VL+
Sbjct: 439 PNHVAFMAVLT 449
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 76/190 (40%), Gaps = 34/190 (17%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLE-------GARRVFIEMEERT--------- 45
+H Y + G ++ N L++MY K LE GA VF EM ERT
Sbjct: 128 LHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVL 187
Query: 46 ----------------VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH 89
+ +W+ +I G A +G +E L +M +KP+ T +L
Sbjct: 188 SEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLP 247
Query: 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNG 149
+ G+ + + G+ I ++D+ ++ + ++ + + + +G
Sbjct: 248 LIAENVDISRGKE-IHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCR-VFTLLTERDG 305
Query: 150 VVWGALLGGC 159
+ W +++ GC
Sbjct: 306 ISWNSIIAGC 315
>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 606
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 172/351 (49%), Positives = 247/351 (70%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+ Y + + + V N LIDM+ KCG + A ++F M E+T+ +W+++I G+A+HG+
Sbjct: 256 IEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGR 315
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA F +M G+ P+ V FIGLL AC H G V+ GR +F SM +Y ++P+IEHYG
Sbjct: 316 GQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYG 375
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+ R G ++EA EF+RNMPI+PN V+ L+ CR H L E+ ++ L + +PL
Sbjct: 376 CMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHEPL 435
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ +V+LSNIYA+ WE ++R++M G+KK PG + I +D ++EFVAGD++H Q
Sbjct: 436 HESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDKSHKQ 495
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I++M +++ MK GY P+TS VLLDI E++KE L RHSEKLA+ FGL+ TPPGT
Sbjct: 496 HKEIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDSLNRHSEKLAIAFGLLRTPPGT 555
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVC DCH+A K IS+I +REI++RDRNRFH F++G CSCGD+W
Sbjct: 556 PIRIVKNLRVCSDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 606
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKC-GCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
VH + GF +I V NT++ MY C G + AR+VF EM + TWSAMI G A G
Sbjct: 154 VHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVG 213
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++ EA+ F +M + P+ +T + +L AC +G ++ G ++ + + I +E
Sbjct: 214 RSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELG-KWIEAYIERHEIHKPVEVS 272
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++ G + +A + R M K V W +++ G +H
Sbjct: 273 NALIDMFAKCGDISKALKLFRAMNEK-TIVSWTSVIVGMAMH 313
Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 92/220 (41%), Gaps = 37/220 (16%)
Query: 46 VFTWSAMIQGLAIHGQAKE-ALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF 104
F ++ +I+ A G +K+ AL + M+ I PN T+ +L AC + ++ G+
Sbjct: 96 AFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTVH 155
Query: 105 YSMTTEYGIIPQIEHYGCMVDLLS-RAGFLQEAYEFIRNMPIKPNGVVWGALLGG-CRVH 162
S+ ++G I MV + S AG + A + MP K + V W A++GG RV
Sbjct: 156 GSV-VKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMP-KSDSVTWSAMIGGYARVG 213
Query: 163 KNID-LAEEASRQLDQLDPLNNGYHVVLSN------------IYAEAERWE--------- 200
++ + +A Q+ ++ P +LS I A ER E
Sbjct: 214 RSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSN 273
Query: 201 ----------DVARVRKLMRNLGVKKTPGWSSITVDGVVH 230
D+++ KL R + K W+S+ V +H
Sbjct: 274 ALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMH 313
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 251/351 (71%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+Y ++ ++ + N+LIDM+ KCG ++ A+R+F M + + +W++M+ G A+HG
Sbjct: 304 VHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGL 363
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL F M ++P+ +TFIG+L AC H G V EG++ FY + YG+ + EHYG
Sbjct: 364 GREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYG 423
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L EA EFIR MP++P+G +WG++LG CRV+ N++L EEA+R L +L+P
Sbjct: 424 CMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPT 483
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +++LSNIYA+ + W +V +VR+LM G++KTPG SS+ +D + H F+AGD +HP+
Sbjct: 484 NDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPE 543
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I M ++ + +KL GY+ +TS VLL+I++ +KE+ + +HSEKLAL +GL+ + G
Sbjct: 544 IAEISIMLRQVREKLKLAGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIGG 603
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I I+KNLRVC DCH KL+S+I R+I +RDRNRFH F+ GSCSC DYW
Sbjct: 604 RIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 85/155 (54%), Gaps = 9/155 (5%)
Query: 14 NIRVC----NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
++++C + L++MY KCG L+ AR+VF ++ ++ V+ WSA+I G + ++ EAL F
Sbjct: 210 DMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLF 269
Query: 70 NKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLL 127
++ ++PN VT + ++ AC +G ++ GR Y T+ G + ++D+
Sbjct: 270 REVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKG--HSVSLNNSLIDMF 327
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
S+ G + A +M K + + W +++ G +H
Sbjct: 328 SKCGDIDAAKRIFDSMSYK-DLISWNSMVNGFALH 361
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 2/145 (1%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ + TL++MY CG L+ AR +F M R W++MI G + EAL + KM
Sbjct: 113 DLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKME 172
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
E G P+ VT L+ AC + + G + +S E + +V++ ++ G L
Sbjct: 173 EDGFSPDEVTMATLVSACAELKDLGVGMK-LHSHIREMDMKICAVLGSALVNMYAKCGDL 231
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGG 158
+ A + + K + W AL+ G
Sbjct: 232 KTARQVFDKLSDK-DVYAWSALIFG 255
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 5/153 (3%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEG--ARRVFIEMEERTVFTWSAMIQGLAIHGQAKEAL 66
+GF + N LI + G L A VF E V TW++M++ + AL
Sbjct: 4 TGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRAL 63
Query: 67 TSFNKMIEIGIK-PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125
S+ +M+E P+ TF LL C + G + + +Y + + +++
Sbjct: 64 QSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVG-KVLHGQVVKYMLHSDLYIETTLLN 122
Query: 126 LLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ + G L+ A M + N VVW +++ G
Sbjct: 123 MYAACGDLKSARFLFERMGHR-NKVVWTSMISG 154
>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
Length = 1097
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/351 (50%), Positives = 240/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++ +G ++RV N L+ MY KCG ++ AR VF +M ER VF+W+ MI GLA HG+
Sbjct: 747 VHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGR 806
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL F KM G KPNG +++ +L AC H G VDEGRR F SMT +YGI P +EHY
Sbjct: 807 GLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYT 866
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L+EA FI NMPI+P+ WGALLG C + N+++AE A+++ +L P
Sbjct: 867 CMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPK 926
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ +V+LSNIYA +WE VR +M+ G++K PG S I VD +H FV GD +HP+
Sbjct: 927 SASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTSHPE 986
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I+ L++ +K KGY+P+T +VL + +++ KE+ L HSEKLA+ +GLM+T
Sbjct: 987 SKEIYAQLNDLIERLKAKGYVPDTRLVLRNTDQEHKEQALCSHSEKLAIVYGLMHTQSKD 1046
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLRVC DCH A K IS+I REIV RD RFH F+ G CSCGDYW
Sbjct: 1047 PIRVYKNLRVCSDCHTATKFISKITGREIVARDAKRFHHFKDGVCSCGDYW 1097
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 87/160 (54%), Gaps = 8/160 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+++ ++GF ++R+ N LI MY KCG ++ AR VF M +R V +W+AM+ GLA +G
Sbjct: 445 VHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGC 504
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGH---MGWVDEGRRFFYSMTTEYGIIPQIE 118
EA T F +M + G+ P+ T++ LL+ G + WV+E + E G+I
Sbjct: 505 GHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNE----VHKHAVETGLISDFR 560
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ + R G + +A + ++ + W A++GG
Sbjct: 561 VGSAFIHMYIRCGSIDDARLLFDKLSVR-HVTTWNAMIGG 599
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 89/165 (53%), Gaps = 8/165 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + QSGF+ ++RV L++MYVKCG +E A+ +F +M ER V +W+ MI GLA +G
Sbjct: 240 KIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYG 299
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHA---CGHMGWVDEGRRFFYSMTTEYGIIPQI 117
+ +EA F +M G PN T++ +L+A G + WV E +S G+ +
Sbjct: 300 RGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKE----VHSHAVNAGLALDL 355
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+V + +++G + +A M + + W ++GG H
Sbjct: 356 RVGNALVHMYAKSGSIDDARVVFDGMT-ERDIFSWTVMIGGLAQH 399
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 87/164 (53%), Gaps = 9/164 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++ +G ++RV N L+ Y KCG ++ A++VF +M ER V TW+ MI GLA HG
Sbjct: 647 VHSHATDAGLV-DLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGC 705
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMG---WVDEGRRFFYSMTTEYGIIPQIE 118
+A + F +M+ GI P+ T++ +L AC G WV E ++ G++ +
Sbjct: 706 GHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKE----VHNHAVSAGLVSDLR 761
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+V + ++ G + +A +M ++ + W ++GG H
Sbjct: 762 VGNALVHMYAKCGSIDDARSVFDDM-VERDVFSWTVMIGGLAQH 804
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 84/162 (51%), Gaps = 10/162 (6%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++ +G ++RV N L+ MY K G ++ AR VF M ER +F+W+ MI GLA HG+
Sbjct: 342 VHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGR 401
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACG-----HMGWVDEGRRFFYSMTTEYGIIPQ 116
+EA + F +M G PN T++ +L+A + WV + + E G I
Sbjct: 402 GQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWV----KVVHKHAEEAGFISD 457
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ ++ + ++ G + +A M + + + W A++GG
Sbjct: 458 LRIGNALIHMYAKCGSIDDARLVFDGMCDR-DVISWNAMMGG 498
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 114/218 (52%), Gaps = 9/218 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH +SG +N+ V N L+ +Y++CG L+ AR+VF ++ ++ ++ W+ MI G A +G
Sbjct: 139 QVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYG 198
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACG---HMGWVDEGRRFFYSMTTEYGIIPQI 117
A++A+ ++KM + +PN +T++ +L AC ++ W G++ ++ + G +
Sbjct: 199 HAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKW---GKK-IHAHIIQSGFQSDV 254
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
+V++ + G +++A + I + ++ N + W ++GG + A Q+ +
Sbjct: 255 RVETALVNMYVKCGSIEDA-QLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQR 313
Query: 178 LDPLNNGY-HVVLSNIYAEAERWEDVARVRKLMRNLGV 214
+ N Y +V + N A A E V V N G+
Sbjct: 314 EGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGL 351
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 86/164 (52%), Gaps = 9/164 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+++ ++G + RV + I MY++CG ++ AR +F ++ R V TW+AMI G A
Sbjct: 546 VHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRC 605
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHAC---GHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+EAL+ F +M G P+ TFI +L A + WV E +S T+ G++ +
Sbjct: 606 GREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKE----VHSHATDAGLV-DLR 660
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+V S+ G ++ A + +M ++ N W ++GG H
Sbjct: 661 VGNALVHTYSKCGNVKYAKQVFDDM-VERNVTTWTMMIGGLAQH 703
>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/351 (51%), Positives = 243/351 (69%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y +G + N+RV L+DMY KCG LE AR+VF ME + V W++MI G IHG
Sbjct: 278 VHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGF 337
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ EAL F++M IG+KP+ +TF+ +L AC H G V +G F SM YG+ P++EHYG
Sbjct: 338 SDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYG 397
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMV+LL RAG +QEAY+ +R+M ++P+ V+WG LL CR+H N+ L EE + L
Sbjct: 398 CMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGLA 457
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +V+LSN+YA A W VA+VR +M+ GV+K PG SSI V VHEFVAGD HP+
Sbjct: 458 SSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGDRRHPR 517
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++ I+ M EK+ +K + Y P T VL DI E+EKE+ L HSEKLAL FGL++T PG
Sbjct: 518 SKDIYSMLEKMNGWLKERHYTPKTDAVLHDIGEQEKEQSLEVHSEKLALAFGLISTSPGA 577
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I+I+KNLRVC DCHA K++S+I R+I++RDRNRFH F+ GSCSC DYW
Sbjct: 578 AIKIVKNLRVCLDCHAVMKIMSKISGRKIIMRDRNRFHHFENGSCSCRDYW 628
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 9/163 (5%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ ++ Y K G L AR +F M + V W+ MI G A HG EAL F KM
Sbjct: 181 RSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKM 240
Query: 73 IEIG-------IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125
+ + ++PN +T + +L +CG +G ++ G ++ +S GI + +VD
Sbjct: 241 MMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECG-KWVHSYVENNGIKVNVRVGTALVD 299
Query: 126 LLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
+ + G L++A + M K + V W +++ G +H D A
Sbjct: 300 MYCKCGSLEDARKVFDVMEGK-DVVAWNSMIMGYGIHGFSDEA 341
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 5/120 (4%)
Query: 25 YVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTF 84
Y G L + +F VF W+ +I A AL+ +++M+ I+PN T
Sbjct: 65 YASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTL 124
Query: 85 IGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP 144
LL AC R +S ++G+ + +VD +R G + A + MP
Sbjct: 125 SSLLKAC-----TLHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMP 179
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 175/355 (49%), Positives = 257/355 (72%), Gaps = 4/355 (1%)
Query: 2 VHEYSNQ----SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLA 57
VH Y ++ +G N+ + ++I MY KCGC+E A +VF M R++ +W+AMI GLA
Sbjct: 382 VHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLA 441
Query: 58 IHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
++G A+ AL F +MI G +P+ +TF+G+L AC G+V+ G R+F SM +YGI P++
Sbjct: 442 MNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKL 501
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
+HYGCM+DLL+R+G EA + NM ++P+G +WG+LL CR+H ++ E + +L +
Sbjct: 502 QHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFE 561
Query: 178 LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDE 237
L+P N+G +V+LSNIYA A RW+DVA++R + + G+KK PG +SI +DGVVHEF+ GD+
Sbjct: 562 LEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDK 621
Query: 238 THPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNT 297
HPQ+E IF+M +++ ++ G++P+TS VL D++E+ KE L +HSEKLA+ FGL++T
Sbjct: 622 FHPQSENIFRMLDEVDRLLEETGFVPDTSEVLYDMDEEWKEGALTQHSEKLAIAFGLIST 681
Query: 298 PPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PG+ IRI+KNLRVC +CH+A KLIS+I NREI+ RDRNRFH F+ G CSC D W
Sbjct: 682 KPGSTIRIVKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGFCSCNDRW 736
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF +N+++ N L+DMY KCG + AR++F ME++ V W+ MI G +EAL F
Sbjct: 289 GFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLF 348
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR---RFFYSMTTEYGIIPQIEHYGCMVDL 126
M+ + PN VTF+ +L AC +G +D G+ + G + + + ++ +
Sbjct: 349 EVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVM 408
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ G ++ A + R+M + + W A++ G
Sbjct: 409 YAKCGCVEVAEQVFRSMGSR-SLASWNAMISG 439
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 5/159 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R+ LI YV G ++ ARR+F E+ + V +W+AMI G G+ +EAL F +M
Sbjct: 191 RDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRM 250
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E + PN T + +L ACGH+ ++ G ++ S + G ++ +VD+ S+ G
Sbjct: 251 QEADVSPNQSTMVSVLSACGHLRSLELG-KWIGSWVRDRGFGKNLQLVNALVDMYSKCGE 309
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
+ A + M K + ++W ++GG + ++ L EEA
Sbjct: 310 IGTARKLFDGMEDK-DVILWNTMIGG---YCHLSLYEEA 344
>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 176/352 (50%), Positives = 238/352 (67%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + GF +I N+L++MY KCG +E A F + R + +WSAMI GLA HG
Sbjct: 435 QVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHG 494
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
KEAL F +M+++G+ PN +T + +L AC H G V E + +F SM +GI P EHY
Sbjct: 495 YGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHY 554
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DLL RAG L+ A E + MP + N +VWGALLG R+HKNIDL E+A+ L L+P
Sbjct: 555 ACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEP 614
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+G HV+L+NIYA W+ VARVR+LM++ VKK PG S + V V+ F+ GD +H
Sbjct: 615 EKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHS 674
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++ +I+ ++L D +K GY+P + L D+E EKE+ LY HSEKLA+ FGL+ TPPG
Sbjct: 675 RSTEIYAKLDELSDLLKKAGYVPMVEIDLHDVERSEKEQLLYHHSEKLAVAFGLIATPPG 734
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLR+C DCH K IS+IV+REI+VRD NRFH F+ GSCSCG+YW
Sbjct: 735 APIRVKKNLRICFDCHTVLKFISKIVSREIIVRDTNRFHHFREGSCSCGEYW 786
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S +SGF + V N+LID Y KCG +E A RVF E + +++++ A G
Sbjct: 334 QIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDG 393
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q +EAL + +M + GIKP+ LL+AC + ++G++ + ++G + I
Sbjct: 394 QGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQ-VHVHILKFGFMSDIFAG 452
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV-WGALLGGCRVH 162
+V++ ++ G +++A +P++ G+V W A++GG H
Sbjct: 453 NSLVNMYAKCGSIEDASCAFSRIPVR--GIVSWSAMIGGLAQH 493
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 89/177 (50%), Gaps = 2/177 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH +GF + V N+L+ +Y KCG AR +F + +R+V +W+A+
Sbjct: 31 QVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSD 90
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA++ F+ M+ GI+PN + +++ C + +GR+ + + G
Sbjct: 91 MHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRK-IHGYLIKLGYDSDAFSA 149
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
+VD+ ++ G L++A + KP+ V W A++ GC +H+ A E R++++
Sbjct: 150 NALVDMYAKVGILEDASSVFDEIA-KPDIVSWNAIIAGCVLHEYHHRALELLREMNK 205
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 5/172 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y + G+ + N L+DMY K G LE A VF E+ + + +W+A+I G +H
Sbjct: 132 KIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHE 191
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
AL +M + G+ PN T L AC M + GR+ S+
Sbjct: 192 YHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGV 251
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEAS 172
G ++D+ S+ + +A + MP + + + W A++ G H + EEA+
Sbjct: 252 G-LIDMYSKCNSMDDARLVFKLMP-ERDMIAWNAVISG---HSQNEEDEEAA 298
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 115/288 (39%), Gaps = 55/288 (19%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
LIDMY KC ++ AR VF M ER + W+A+I G + + + +EA + F M GI N
Sbjct: 253 LIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFN 312
Query: 81 GVTFIGLLHACG-----------HMGWVDEGRRF----FYSMTTEYGIIPQIEH------ 119
T +L + H + G F S+ YG +E
Sbjct: 313 QTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFE 372
Query: 120 ---------YGCMVDLLSRAGFLQEA---YEFIRNMPIKPNGVVWGALLGGCRVHKNIDL 167
+ +V ++ G +EA Y +++ IKP+ V +LL C +
Sbjct: 373 ESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQ 432
Query: 168 AEEASRQLDQLDPLNNGYH-VVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD 226
++ + + +++ + L N+YA+ ED + +S I V
Sbjct: 433 GKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDA--------------SCAFSRIPVR 478
Query: 227 GVV--HEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDI 272
G+V + G H ++ Q+++++ LK +P + L+ +
Sbjct: 479 GIVSWSAMIGGLAQHGYGKEALQLFKQM-----LKVGVPPNHITLVSV 521
>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
Length = 607
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 176/351 (50%), Positives = 243/351 (69%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V + + G +++ +CN LID KCG ++GA VF MEERTV +W+++I LA+ G+
Sbjct: 257 VGRFVEREGIGKSVTLCNALIDALAKCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEGR 316
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA+ F M G++P+ V FIG+L AC H G VDEG +F SM EYGI P+IEHYG
Sbjct: 317 GKEAVAVFEAMKTAGVRPDDVVFIGVLTACSHAGMVDEGYGYFDSMKMEYGIDPKIEHYG 376
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+ RAG ++ A EFI MP+KPN ++W L+ CR H ++L E +R L P
Sbjct: 377 CMVDMFGRAGMVERAMEFIHTMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEYPA 436
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ +V+LSN+YA +RW++ + +R+ M G+KK PG S + +DG VHEF+AGDE+HPQ
Sbjct: 437 HEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQ 496
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I+ M E++ +K G+I TS VLLD++E++KE L HSEKLA+ F L+ TPPGT
Sbjct: 497 WKEIYMMVEEMARELKHVGHISATSEVLLDLDEEDKEGALQWHSEKLAIAFVLLRTPPGT 556
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+R++KNLRVC DCHAA K IS + NREI+VRDR+RFH F+ GSCSC D+W
Sbjct: 557 QVRVVKNLRVCSDCHAAIKCISLVYNREIIVRDRSRFHRFKNGSCSCNDFW 607
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 84/206 (40%), Gaps = 45/206 (21%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCG--CLEGARRVFIEMEERTVFTWSAMIQGLAI 58
+ H + + GF + V NTLI MY G L AR VF M++ +V TWSAMI G
Sbjct: 153 QAHAAALKFGFATDQYVSNTLIHMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGYVR 212
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIG-------------------------------- 86
G + +A+ F +M G++P+ VT IG
Sbjct: 213 GGLSSDAVGLFREMQASGVRPDEVTVIGVLAAAADLGALELARWVGRFVEREGIGKSVTL 272
Query: 87 ---LLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA---YEFI 140
L+ A G VD F M + + ++D L+ G +EA +E +
Sbjct: 273 CNALIDALAKCGDVDGAVAVFQGMEER-----TVVSWTSVIDALAMEGRGKEAVAVFEAM 327
Query: 141 RNMPIKPNGVVWGALLGGCRVHKNID 166
+ ++P+ VV+ +L C +D
Sbjct: 328 KTAGVRPDDVVFIGVLTACSHAGMVD 353
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/346 (52%), Positives = 240/346 (69%)
Query: 7 NQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEAL 66
N + F N + LIDMY KCG ++ A VF M ++ W+A I GLA+ G K+AL
Sbjct: 337 NGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDAL 396
Query: 67 TSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126
F +M + GIKP+ TF+GLL AC H G V+EGRR+F SM + + P+IEHYGCMVDL
Sbjct: 397 GLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDL 456
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYH 186
L RAG L EA++ I++MP++ N +VWGALLGGCR+H++ L E ++L L+P ++G +
Sbjct: 457 LGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNY 516
Query: 187 VVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIF 246
V+LSNIYA + +WE+ A++R +M GVKK PG+S I VDGVVH+F+ GD +HP +EKI+
Sbjct: 517 VLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIY 576
Query: 247 QMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIM 306
+L +K GY+P T VL DIEE+EKE F+ HSEKLA+ FGL++T P I ++
Sbjct: 577 AKLGELAKDLKAAGYVPTTDHVLFDIEEEEKEHFIGCHSEKLAVAFGLISTAPNDKILVV 636
Query: 307 KNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
KNLRVC DCH A K IS I REI+VRD NRFHCF G CSC DYW
Sbjct: 637 KNLRVCGDCHEAIKHISRIAGREIIVRDNNRFHCFTDGLCSCKDYW 682
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+ EY ++G RN+ V L+D Y KCG +E AR VF M E+ + +WS+MIQG A +G
Sbjct: 231 IDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGL 290
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEAL F KM+ G+KP+ +G+L +C +G ++ G + ++ +
Sbjct: 291 PKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELG-DWASNLINGNEFLDNSVLGT 349
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ ++ G + A+E R M K + VVW A + G
Sbjct: 350 ALIDMYAKCGRMDRAWEVFRGMR-KKDRVVWNAAISG 385
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 85/164 (51%), Gaps = 14/164 (8%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++G + V +LI++Y KCG ++ A +VF ++ ++ +W+A I G G
Sbjct: 129 KMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVG 188
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMG------WVDEGRRFFYSMTTEYGII 114
+ +EA+ F +++E+G++P+ + + +L AC G W+DE TE G++
Sbjct: 189 KCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDE-------YITENGMV 241
Query: 115 PQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ +VD + G ++ A M ++ N V W +++ G
Sbjct: 242 RNVFVATALVDFYGKCGNMERARSVFDGM-LEKNIVSWSSMIQG 284
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 75/157 (47%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G + + N ++ G + R+ + +E +F ++ MI+GL ++
Sbjct: 29 IHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLNDC 88
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+E++ ++ M + G+ P+ TF +L AC + + G + +S+ + G
Sbjct: 89 FQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVK-MHSLVVKAGCEADAFVKI 147
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+++L ++ GF+ A++ ++P K N W A + G
Sbjct: 148 SLINLYTKCGFIDNAFKVFDDIPDK-NFASWTATISG 183
>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
Length = 748
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 177/354 (50%), Positives = 245/354 (69%), Gaps = 2/354 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H S ++G ++ V +ID+Y KCG L+ A +F + R+ W+A+I G+ +HG
Sbjct: 395 RMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHG 454
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+AL+ F++M + GI P+ VTF+ LL AC H G VD+GR FF M T YGI P +HY
Sbjct: 455 HGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHY 514
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVD+ RAG L +A++FIRNMPIKP+ +WGALLG CR+H N+++ + AS+ L +LDP
Sbjct: 515 ACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDP 574
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDE--T 238
N GY+V++SN+YA+ +W+ V VR L+R ++KTPGWSSI V V+ F +G++
Sbjct: 575 KNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNI 634
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
HPQ E+I + LL ++ GY+P+ S VL D+EE EKE+ L HSE+LA+ FG++NTP
Sbjct: 635 HPQHEEIQRELLDLLAKIRSLGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTP 694
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P TP+ I KNLRVC DCH A K IS+I REI+VRD NRFH F+ G CSCGD+W
Sbjct: 695 PRTPLHIYKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGYCSCGDFW 748
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 4/178 (2%)
Query: 2 VHEYSNQSGFR-RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
VH Y + G+ +I N ++DMY K +E A+R+F M R +W+ +I G +G
Sbjct: 293 VHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNG 352
Query: 61 QAKEALTSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
A EA+ ++ M + G+KP TF+ +L A H+G + +G R ++++ + G+ +
Sbjct: 353 LASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTR-MHALSIKTGLNLDVYV 411
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
C++DL ++ G L EA P + G W A++ G VH + A Q+ Q
Sbjct: 412 GTCVIDLYAKCGKLDEAMLLFEQTPRRSTG-PWNAVISGVGVHGHGAKALSLFSQMQQ 468
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 4/177 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ + G + VCN +ID+Y K G LE R+VF M R + TW+++I G GQ
Sbjct: 192 MHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQ 251
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+ F M + G+ P+ +T + L A G + GR M + I
Sbjct: 252 VASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGN 311
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+VD+ ++ ++ A +MP++ + V W L+ G + LA EA D +
Sbjct: 312 AIVDMYAKLSKIEAAQRMFDSMPVR-DAVSWNTLITG---YMQNGLASEAIHVYDHM 364
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 8/151 (5%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
R + L+ Y++ G + A R F EM R V W+AM+ GL + +A EA+ F
Sbjct: 100 LRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFG 159
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM---TTEYGIIPQIEHYGCMVDLL 127
+M+ G+ + VT +L C +G R +M ++G+ ++ M+D+
Sbjct: 160 RMVMEGVAGDAVTVSSVLPMCVLLG----DRALALAMHLYAVKHGLDDELFVCNAMIDVY 215
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ G L+E + M + + V W +++ G
Sbjct: 216 GKLGMLEEVRKVFDGMSSR-DLVTWNSIISG 245
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 178/350 (50%), Positives = 239/350 (68%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H Y Q+GF +I V ++DMY KCG L+ AR +F E + + WSAMI IHG
Sbjct: 942 HSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHG 1001
Query: 63 KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC 122
++A+ F++M++ G++P+ VTF +L AC H G ++EG+ +F MT E+ I ++ +Y C
Sbjct: 1002 RKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYAC 1061
Query: 123 MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182
MVDLL RAG L EA + I NMP++P+ +WG+LLG CR+H N+DLAE+ + L LDP++
Sbjct: 1062 MVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVH 1121
Query: 183 NGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQA 242
GYHV+LSNIYA RW +V +VRK+M G K G+S + D VH+F GD +HPQ
Sbjct: 1122 AGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQW 1181
Query: 243 EKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTP 302
EK++ E+L MK GY+P T VL DIEE+ KE L HSE+LA+ FGL+NT PGT
Sbjct: 1182 EKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTT 1241
Query: 303 IRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+RI KNLR+C DCH A KLIS+IVNR I+VRD +RFH F+ G CSCGDYW
Sbjct: 1242 LRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDYW 1291
Score = 233 bits (595), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 118/271 (43%), Positives = 169/271 (62%), Gaps = 1/271 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y +SGF N+ V +LI++Y KCG L A ++F M R V WS+MI IHG+
Sbjct: 430 LHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGR 489
Query: 62 AKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL F++M++ ++PN VTF+ +L AC H G V+EG + F M +Y + P EH+
Sbjct: 490 GGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHF 549
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
G MVDLL R G L +A + I MPI VWGALLG CR+H NI++ E A++ L LDP
Sbjct: 550 GIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDP 609
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ GY+++LSNIYA +W++VA +R ++ G+KK G S + V G VH F+A D HP
Sbjct: 610 SHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHP 669
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLD 271
++KI+++ KL M + YIP+ +L D
Sbjct: 670 DSQKIYELLRKLEAQMGKEVYIPDLDFLLHD 700
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 90/173 (52%), Gaps = 6/173 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H++ G ++ V L+DMY KCG +E AR VF +M R + +W++MI G A +G
Sbjct: 840 IHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGY 899
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
E L F+ M G+ PN V+ + +L ACG++G + +G +F+S + G I
Sbjct: 900 NSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKG-EWFHSYVIQTGFEFDILVAT 958
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEE 170
++D+ S+ G L A K + V W A++ +H K IDL ++
Sbjct: 959 AIMDMYSKCGSLDLARCLFDETAGK-DLVCWSAMIASYGIHGHGRKAIDLFDQ 1010
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H+ + GF + V LIDMY+KC C + A +F + ++ V +W A++ G A +G
Sbjct: 328 KIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNG 387
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A +++ F M+ GI+P+ V + +L A +G + + G +
Sbjct: 388 MAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQA-LCLHGYVVRSGFNSNVFVG 446
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+++L S+ G L +A + + M ++ + V+W +++ +H
Sbjct: 447 ASLIELYSKCGSLGDAVKLFKGMIVR-DVVIWSSMIAAYGIH 487
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + F ++ + N+L+++Y K GC + A +F +M E+ V +WS MI A +
Sbjct: 228 VHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEA 287
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A EAL F++MIE +PN VT + L AC ++EG++ + + G
Sbjct: 288 ANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKK-IHKIAVWKGFELDFSVST 346
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ + EA + + +P K + V W ALL G
Sbjct: 347 ALIDMYMKCSCPDEAVDLFQRLP-KKDVVSWVALLSG 382
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 69/149 (46%), Gaps = 2/149 (1%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G + + R+ MYV ++ A VF ++ F W+ MI+G A G+ +L +
Sbjct: 747 GLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELY 806
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+KM+E G+KP+ F L +C + + G+ + G + +VD+ ++
Sbjct: 807 SKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVC-CGCSNDLFVDAALVDMYAK 865
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
G ++ A M ++ + V W +++ G
Sbjct: 866 CGDIEAARLVFDKMAVR-DLVSWTSMISG 893
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 6/182 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++G + L +Y KC L+ AR+VF E V W++ ++
Sbjct: 22 QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81
Query: 61 QAKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRF--FYSMTTEYGIIPQI 117
Q +E L F+ MI G P+ T L AC + ++ G+ F E G +
Sbjct: 82 QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIG--SDM 139
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
+V+L S+ G + EA + +P+ V+W +++ G + + + + A Q+
Sbjct: 140 FVGSALVELYSKCGQMGEALKVFEEFQ-RPDTVLWTSMVTGYQQNNDPEEALALFSQMVM 198
Query: 178 LD 179
+D
Sbjct: 199 MD 200
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 79/165 (47%), Gaps = 18/165 (10%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ V + L+++Y KCG + A +VF E + W++M+ G + +EAL F++M+
Sbjct: 138 DMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMV 197
Query: 74 EIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG------CMVDL 126
+ + + VT + ++ AC + V G + +G++ + E G +++L
Sbjct: 198 MMDCVVLDPVTLVSVVSACAQLLNVKAG-------SCVHGLVIRREFDGDLPLVNSLLNL 250
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
++ G + A MP K + + W ++ + N + A EA
Sbjct: 251 YAKTGCEKIAANLFSKMPEK-DVISWSTMIA---CYANNEAANEA 291
>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 175/351 (49%), Positives = 246/351 (70%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ + G ++ V ++IDMY KCG +E AR F M+ + V +W+AMI G +HG
Sbjct: 309 IHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGH 368
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A +AL F MI+ G++PN +TF+ +L AC H G D G +F +M +G+ P +EHYG
Sbjct: 369 AAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYG 428
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAGFLQ+AY+ I+ M ++P+ ++W +LL CR+HKN++LAE + +L +LDP
Sbjct: 429 CMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDPS 488
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+++LS+IYA++ RW+DV RVR M+N G+ K PG+S + ++G VH F+ GDE HPQ
Sbjct: 489 NCGYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQ 548
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
EKI++ +L + GY+ NTS V D++E+EKE L HSEKLA+ FG+MNT PG+
Sbjct: 549 REKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGS 608
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ ++KNLRVC DCH KLIS+IV+RE VVRD RFH F+ G CSCGDYW
Sbjct: 609 TVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGFCSCGDYW 659
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 48/73 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H+ + G++ +I V + LI MY CG LE AR+VF E+ +R + +W++MI+G ++G
Sbjct: 97 QTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNG 156
Query: 61 QAKEALTSFNKMI 73
A +A++ F ++
Sbjct: 157 NALDAVSLFKDLL 169
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 83/169 (49%), Gaps = 15/169 (8%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEG----ARRVFIEMEERTVFTWSAMIQGLA 57
+H + + GF R + V NTL+D Y K G EG AR++F ++ ++ ++++++ A
Sbjct: 205 IHSFVIKRGFDRGVSVGNTLLDAYAKGG--EGGVAVARKIFDQIVDKDRVSYNSIMSVYA 262
Query: 58 IHGQAKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ 116
G + EA F ++I E + N +T +L A H G + G + + G+
Sbjct: 263 QSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIG-KCIHDQVIRMGLEDD 321
Query: 117 IEHYGCMVDLLSRAGFLQE---AYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ ++D+ + G ++ A++ ++N ++ W A++ G +H
Sbjct: 322 VIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRS----WTAMIAGYGMH 366
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 41 MEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG 100
+++ VF+W+++I LA G + EAL +F+ M ++ + P +F + AC + + G
Sbjct: 36 VDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSG 95
Query: 101 RRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCR 160
++ + +G I ++ + S G L++A + +P K N V W +++ G
Sbjct: 96 KQ-THQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP-KRNIVSWTSMIRGYD 153
Query: 161 VHKN 164
++ N
Sbjct: 154 LNGN 157
>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
Length = 582
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/352 (50%), Positives = 240/352 (68%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y G + N+ L+DMY KCG ++ A VF M+ + V W+ MI+GLA+HG+
Sbjct: 231 VHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGR 290
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ F +M GI+P+ + FIG+L AC H G VD+GR F SM +YGI P+IEHYG
Sbjct: 291 GSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYG 350
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL+R GFL EA E I+ MP++P+ ++WGAL+ GCR HKN++ AE ++ L+P
Sbjct: 351 CMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFHKNVEFAEYVAKHWILLEPD 410
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+G +V+LSNIYA + R +R LMR GV KTPG S++ V+GV+H+F+ GD +HP+
Sbjct: 411 KSGAYVLLSNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEVNGVIHQFIVGDLSHPR 470
Query: 242 AEKIFQMWEKLLDGMKL-KGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ I W ++ ++L +GYIP+ VLLDIEE+EKE L RHSEKLA+ F L++
Sbjct: 471 IKDILSKWYEIDTRIRLEEGYIPDMKEVLLDIEEEEKEGALSRHSEKLAIAFALISISDN 530
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH KLIS++ REIVVRDR RFH F+ G+CSC DYW
Sbjct: 531 MPIRIFKNLRVCHDCHHVTKLISKVYGREIVVRDRTRFHLFKEGTCSCKDYW 582
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NTLI Y + G L AR +F EM R +WSAM+ G G +EAL F +M ++
Sbjct: 147 NTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVR 206
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ +G+L AC G +++G ++ + +GI + +VD+ S+ G +Q A +
Sbjct: 207 PDDTVLVGVLAACAQHGALEQG-KWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMD 265
Query: 139 FIRNMPIKPNGVVWGALLGGCRVH 162
M K N + W ++ G +H
Sbjct: 266 VFERMQYK-NVLAWTTMIKGLAMH 288
>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
Length = 956
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 178/350 (50%), Positives = 239/350 (68%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H Y Q+GF +I V ++DMY KCG L+ AR +F E + + WSAMI IHG
Sbjct: 607 HSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHG 666
Query: 63 KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC 122
++A+ F++M++ G++P+ VTF +L AC H G ++EG+ +F MT E+ I ++ +Y C
Sbjct: 667 RKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYAC 726
Query: 123 MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182
MVDLL RAG L EA + I NMP++P+ +WG+LLG CR+H N+DLAE+ + L LDP++
Sbjct: 727 MVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVH 786
Query: 183 NGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQA 242
GYHV+LSNIYA RW +V +VRK+M G K G+S + D VH+F GD +HPQ
Sbjct: 787 AGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQW 846
Query: 243 EKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTP 302
EK++ E+L MK GY+P T VL DIEE+ KE L HSE+LA+ FGL+NT PGT
Sbjct: 847 EKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTT 906
Query: 303 IRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+RI KNLR+C DCH A KLIS+IVNR I+VRD +RFH F+ G CSCGDYW
Sbjct: 907 LRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDYW 956
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 74/143 (51%), Gaps = 8/143 (5%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
F ++ + N+L+++Y K GC + A +F +M E+ V +WS MI A + A EAL F+
Sbjct: 202 FDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFH 261
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
+MIE +PN VT + L AC ++EG++ + + + + ++ ++
Sbjct: 262 EMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIH-----KIAVWKDVVSWVALLSGYAQN 316
Query: 131 GFLQEAYEFIRNM---PIKPNGV 150
G ++ RNM I+P+ V
Sbjct: 317 GMAYKSMGVFRNMLSDGIQPDAV 339
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 13/172 (7%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G + + R+ MYV ++ A VF ++ F W+ MI+G A G+ +L +
Sbjct: 506 GLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELY 565
Query: 70 NKMIEIGIK-------PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC 122
+KM+E G+K PN V+ + +L ACG++G + +G +F+S + G I
Sbjct: 566 SKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKG-EWFHSYVIQTGFEFDILVATA 624
Query: 123 MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEE 170
++D+ S+ G L A K + V W A++ +H K IDL ++
Sbjct: 625 IMDMYSKCGSLDLARCLFDETAGK-DLVCWSAMIASYGIHGHGRKAIDLFDQ 675
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y +SGF N+ V +LI++Y KCG L A ++F M R V WS+MI IHG+
Sbjct: 360 LHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGR 419
Query: 62 AKEALTSFNKMIEI 75
EAL F++MI++
Sbjct: 420 GGEALEIFDQMIQV 433
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 99/228 (43%), Gaps = 11/228 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++G + L +Y KC L+ AR+VF E V W++ ++
Sbjct: 22 QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81
Query: 61 QAKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRF--FYSMTTEYGIIPQI 117
Q +E L F+ MI G P+ T L AC + ++ G+ F E G +
Sbjct: 82 QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIG--SDM 139
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
+V+L S+ G + EA + +P+ V+W +++ G + + + + A Q+
Sbjct: 140 FVGSALVELYSKCGQMGEALKVFEEFQ-RPDTVLWTSMVTGYQQNNDPEEALALFSQMVM 198
Query: 178 LDPLNNGYHVV--LSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSI 223
+D + +V L N+YA+ E +A L + K WS++
Sbjct: 199 MDCFDGDLPLVNSLLNLYAKT-GCEKIA--ANLFSKMPEKDVISWSTM 243
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 64/135 (47%), Gaps = 2/135 (1%)
Query: 44 RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF 103
+ V +W A++ G A +G A +++ F M+ GI+P+ V + +L A +G +
Sbjct: 301 KDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQA-LC 359
Query: 104 FYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHK 163
+ G + +++L S+ G L +A + + M ++ + V+W +++ +H
Sbjct: 360 LHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVR-DVVIWSSMIAAYGIHG 418
Query: 164 NIDLAEEASRQLDQL 178
A E Q+ Q+
Sbjct: 419 RGGEALEIFDQMIQV 433
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 3/154 (1%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ V + L+++Y KCG + A +VF E + W++M+ G + +EAL F++M+
Sbjct: 138 DMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMV 197
Query: 74 EIGIKPNGVTFI-GLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ + + LL+ G F M E +I C + +
Sbjct: 198 MMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKM-PEKDVISWSTMIACYANNEAANEA 256
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNID 166
L +E I +PN V + L C V +N++
Sbjct: 257 LNLFHEMIEKR-FEPNSVTVVSALQACAVSRNLE 289
>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
Length = 635
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/352 (50%), Positives = 245/352 (69%), Gaps = 1/352 (0%)
Query: 2 VHEY-SNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+H Y N + N RV LIDMY KCG LE A VF + ++ + W+AMI G A+HG
Sbjct: 284 LHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHG 343
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+++AL F+++ G+ P +TFIGLL+AC H G VDEG +FF SM EY I+P+IEHY
Sbjct: 344 DSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHY 403
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLL RAG ++EA+ +++M I P+ V+W +LL CR+HKN+ L ++ + L
Sbjct: 404 GCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGL 463
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G +++LSNIYA WE+VARVR +M+ G++K PG S+I V V+EFVAGD +HP
Sbjct: 464 ANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHP 523
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ ++I+ M EK+ +K +G++P T +VL D++E KEK L HSEKLA+ FGL++T PG
Sbjct: 524 RTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGLISTAPG 583
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I+I+KNLR C DCHA KLIS+I R+IV RDRNRFH F GSC+CGDYW
Sbjct: 584 ETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 635
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 1/157 (0%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
++ Y K G L+ AR +F M + W+AMI G HG+ EAL F M+ G+
Sbjct: 200 TAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVD 259
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ V I L A +G + GR + + ++D+ + G L++A
Sbjct: 260 PDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVS 319
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
++ K + VVW A++ G +H + A E QL
Sbjct: 320 VFNSIGDK-DIVVWNAMINGYAMHGDSRKALEMFSQL 355
>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
Length = 634
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/352 (50%), Positives = 245/352 (69%), Gaps = 1/352 (0%)
Query: 2 VHEY-SNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+H Y N + N RV LIDMY KCG LE A VF + ++ + W+AMI G A+HG
Sbjct: 283 LHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHG 342
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+++AL F+++ G+ P +TFIGLL+AC H G VDEG +FF SM EY I+P+IEHY
Sbjct: 343 DSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHY 402
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLL RAG ++EA+ +++M I P+ V+W +LL CR+HKN+ L ++ + L
Sbjct: 403 GCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGL 462
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G +++LSNIYA WE+VARVR +M+ G++K PG S+I V V+EFVAGD +HP
Sbjct: 463 ANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHP 522
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ ++I+ M EK+ +K +G++P T +VL D++E KEK L HSEKLA+ FGL++T PG
Sbjct: 523 RTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGLISTAPG 582
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I+I+KNLR C DCHA KLIS+I R+IV RDRNRFH F GSC+CGDYW
Sbjct: 583 ETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 634
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 1/157 (0%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
++ Y K G L+ AR +F M + W+AMI G HG+ EAL F M+ G+
Sbjct: 199 TAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVD 258
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ V I L A +G + GR + + ++D+ + G L++A
Sbjct: 259 PDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVS 318
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
++ K + VVW A++ G +H + A E QL
Sbjct: 319 VFNSIGDK-DIVVWNAMINGYAMHGDSRKALEMFSQL 354
>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 650
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 173/336 (51%), Positives = 247/336 (73%), Gaps = 4/336 (1%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V N L+DMY KCG + A++VF EM ++ FTW+ MI GLAI+G +EAL F+ MIE
Sbjct: 319 VGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIEAS 378
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
+ P+ +T+IG+L AC VD+G+ FF +MT ++GI P + HYGCMVDLL G L+EA
Sbjct: 379 VTPDEITYIGVLCAC----MVDKGKSFFTNMTMQHGIKPTVTHYGCMVDLLGCVGCLEEA 434
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
E I NMP+KPN +VWG+ LG CRVHKN+ LA+ A++Q+ +L+P N +V+L NIYA +
Sbjct: 435 LEVIVNMPVKPNSIVWGSPLGACRVHKNVQLADMAAKQILELEPENGAVYVLLCNIYAAS 494
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGM 256
++WE++ +VRKLM G+KKTPG S + ++G V+EFVAGD++HPQ+++I+ E ++ G+
Sbjct: 495 KKWENLCQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQGL 554
Query: 257 KLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCH 316
GY P+TS V LD+ E++KE LYRHSEKLA+ + L+++ PG IRI+KNLR+C DCH
Sbjct: 555 IKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGVTIRIVKNLRMCVDCH 614
Query: 317 AAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
KL+S+ NRE++V+D+ RFH F+ GSCSC ++W
Sbjct: 615 HMAKLVSQAYNRELIVKDKTRFHHFRHGSCSCNNFW 650
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 24 MYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVT 83
M+ CG ++ A+ VF M+ R V +W+AMI G AL F +M +KP+ T
Sbjct: 225 MFAACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFT 284
Query: 84 FIGLLHACGHMGWVDEGR 101
+ +L AC +G ++ G
Sbjct: 285 MVSILIACALLGALELGE 302
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 97/232 (41%), Gaps = 24/232 (10%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEA-- 65
+ GF N+ V I M+ CG ++ A +VF + V TW+ M+ G Q K +
Sbjct: 135 KHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNRVKQFKISKM 194
Query: 66 ---LTSFNKMIEIGIKPNGVTFIG------LLHACGHMGWVDEGRRFFYSMTTEYGIIPQ 116
L++ +K+ ++ + +I + ACG M DE + F +M T
Sbjct: 195 LLVLSACSKLKDLEWGKHIFKYINGGIVEHMFAACGEM---DEAQGVFDNMKTR-----D 246
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGCRVHKNIDLAEEASR 173
+ + M+D R A R M +KP+ ++L C + ++L E
Sbjct: 247 VVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGEWVKT 306
Query: 174 QLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITV 225
+D+ N+ + V + + + +V + +K+ + + K W+++ V
Sbjct: 307 CIDKNSNKNDSF--VGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIV 356
>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Vitis vinifera]
Length = 611
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/352 (50%), Positives = 248/352 (70%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++ F ++I V N LIDMY KCG ++ AR VF M ++ +W+AMI G ++HG
Sbjct: 260 QIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHG 319
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F+KM E +KP+ +TF+G+L AC + G +D+G+ +F SM ++GI P IEHY
Sbjct: 320 LGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHY 379
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMV LL R G L +A + I +P +P+ +VW ALLG C +H +I+L +++++ +++P
Sbjct: 380 TCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEP 439
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ HV+LSN+YA A+RW++VA VRK M+ GVKK PG S I G VH F GD +HP
Sbjct: 440 QDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHP 499
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ I M E L K GYIPN +VVLLD+E++EKE+ L+ HSE+LAL+FG++ TP G
Sbjct: 500 EVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSG 559
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+PIRIMKNLR+C DCHAA K IS++V REIVVRD NRFH FQ G CSCGDYW
Sbjct: 560 SPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 611
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 90/178 (50%), Gaps = 5/178 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G ++ V N L+D+Y KCG +E + +F E R TW+ +I G G
Sbjct: 159 QIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLG 218
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++AL F M+E ++ VT+ L AC + ++ G + +S+T + I
Sbjct: 219 DGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQ-IHSLTVKTTFDKDIVVT 277
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++D+ ++ G +++A + ++ K + V W A++ G +H L EA R D++
Sbjct: 278 NALIDMYAKCGSIKDA-RLVFDLMNKQDEVSWNAMISGYSMH---GLGREALRIFDKM 331
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 6/155 (3%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N L++MYVK L A ++F EM ER ++ +IQG A + EA+ F ++ +
Sbjct: 77 NILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRL-HREVL 135
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
PN TF +L AC M ++ G + + + G+ + ++D+ ++ G ++ + E
Sbjct: 136 PNQFTFASVLQACATMEGLNLGNQ-IHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSME 194
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR 173
P + N V W ++ G H + E+A R
Sbjct: 195 LFAESPHR-NDVTWNTVIVG---HVQLGDGEKALR 225
>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
Length = 649
Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust.
Identities = 172/345 (49%), Positives = 235/345 (68%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
Q GF N V N+LIDMY KCG L+ + ++F EM+ + +W+AM+ G A+HG A+
Sbjct: 305 QMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIA 364
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F+ M E ++ + V+F+ +L AC H G V+EGR+ F+SM+ +Y I P +EHY CMVDLL
Sbjct: 365 LFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLL 424
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV 187
RAG E FI+ MP++P+ VWGALLG CR+H N+ L E A L +L+P N + V
Sbjct: 425 GRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFV 484
Query: 188 VLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQ 247
VLS+IYA++ RW D + R M +LG+KKTPG S + + VH F GD++HPQ E +
Sbjct: 485 VLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHL 544
Query: 248 MWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMK 307
+W LL+ M+ GY+P+ S VL ++EE++KE FLY HSE+LA+TF L+NTPPG+ I+I+K
Sbjct: 545 LWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVK 604
Query: 308 NLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
NLRVC DCH K IS+I R I+VRD RFH F+ G CSC DYW
Sbjct: 605 NLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 649
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 10/166 (6%)
Query: 20 TLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP 79
T++ Y GC +F +M+ V TW+ +I +G AKEA++SF++M P
Sbjct: 217 TMMAGYAHNGCFVEVLELFDKMKLGNV-TWNVIIAAYMQNGHAKEAISSFHQMRLENFHP 275
Query: 80 NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEF 139
N VTF+ +L A ++ EG F++ + G + ++D+ ++ G L + +
Sbjct: 276 NSVTFVSVLPAAAYLAAFREGMA-FHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKL 334
Query: 140 IRNMPIKPNGVVWGALLGGCRVHKNID-------LAEEASRQLDQL 178
M K + V W A+L G VH + D L +E+ Q+D +
Sbjct: 335 FNEMDHK-DTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSV 379
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
+ G R++ + L+DMY K G L+ AR VF +M +R V W+AMI GL+ A
Sbjct: 143 KGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARR 202
Query: 68 SFNKMIEIGIKPNGVTFIGLLH 89
F++M++ G G H
Sbjct: 203 VFDQMVDQDDVSWGTMMAGYAH 224
>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
[Vitis vinifera]
Length = 1005
Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust.
Identities = 172/345 (49%), Positives = 235/345 (68%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
Q GF N V N+LIDMY KCG L+ + ++F EM+ + +W+AM+ G A+HG A+
Sbjct: 661 QMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIA 720
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F+ M E ++ + V+F+ +L AC H G V+EGR+ F+SM+ +Y I P +EHY CMVDLL
Sbjct: 721 LFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLL 780
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV 187
RAG E FI+ MP++P+ VWGALLG CR+H N+ L E A L +L+P N + V
Sbjct: 781 GRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFV 840
Query: 188 VLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQ 247
VLS+IYA++ RW D + R M +LG+KKTPG S + + VH F GD++HPQ E +
Sbjct: 841 VLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHL 900
Query: 248 MWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMK 307
+W LL+ M+ GY+P+ S VL ++EE++KE FLY HSE+LA+TF L+NTPPG+ I+I+K
Sbjct: 901 LWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVK 960
Query: 308 NLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
NLRVC DCH K IS+I R I+VRD RFH F+ G CSC DYW
Sbjct: 961 NLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 10/185 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIHG 60
+H + GF + V N LIDMY KCG L A +F + + + TW+ +I +G
Sbjct: 553 IHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNG 612
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
AKEA++SF++M PN VTF+ +L A ++ EG F++ + G +
Sbjct: 613 HAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA-FHACIIQMGFLSNTLVG 671
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNID-------LAEEASR 173
++D+ ++ G L + + M K + V W A+L G VH + D L +E+
Sbjct: 672 NSLIDMYAKCGQLDYSEKLFNEMDHK-DTVSWNAMLSGYAVHGHGDRAIALFSLMQESQV 730
Query: 174 QLDQL 178
Q+D +
Sbjct: 731 QIDSV 735
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + Q +I V L+ MY KCG E A+++F ++ R + WSA+I L G
Sbjct: 351 IHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGY 410
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL+ F +M +KPN VT + +L AC + + G+ + T + + +
Sbjct: 411 PEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKS-IHCFTVKADMDSDLSTGT 469
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V + ++ GF A M + + V W +L+ G
Sbjct: 470 ALVSMYAKCGFFTAALTTFNRMSSR-DIVTWNSLING 505
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 1/157 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ ++ ++ L+ MY KCG A F M R + TW+++I G A G
Sbjct: 452 IHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGD 511
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+ F K+ I P+ T +G++ AC + +D+G + + + G
Sbjct: 512 PYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQG-TCIHGLIVKLGFESDCHVKN 570
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ ++ G L A + V W ++
Sbjct: 571 ALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 18/163 (11%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H ++ G R++ + L+DMY K G L+ AR VF +M +R V W+AMI GL+
Sbjct: 152 HGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDP 211
Query: 63 KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR-------RFFYSMTTEYGIIP 115
EA+ F M +G++P+ V+ + L + ++ R R +S G+I
Sbjct: 212 CEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLI- 270
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
DL S+ G + A M + + V WG ++ G
Sbjct: 271 ---------DLYSKCGDVDVARRVFDQM-VDQDDVSWGTMMAG 303
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H SGF+ + + + LI++Y + AR VF + W++MI+
Sbjct: 50 QIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSK 108
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q EAL + M+E G++P+ TF +L AC + EG +F+ G+ +
Sbjct: 109 QYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEG-VWFHGEIDRRGLERDVFIG 167
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ S+ G L+ A E MP K + V W A++ G
Sbjct: 168 AGLVDMYSKMGDLKRAREVFDKMP-KRDVVAWNAMIAG 204
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 78/184 (42%), Gaps = 35/184 (19%)
Query: 11 FRRNIR--VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
FRR+ V N LID+Y KCG ++ ARRVF +M ++ +W M+ G A +G E L
Sbjct: 257 FRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLEL 316
Query: 69 FNKMIEIGIKPNGVTFIGL---------------LHACGHMGWVDEGRRFFYSMTTEYGI 113
F+KM ++ N V+ + +H C +D + Y
Sbjct: 317 FDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAK 376
Query: 114 IPQIEH---------------YGCMVDLLSRAGFLQEA---YEFIRNMPIKPNGVVWGAL 155
+ E + ++ L + G+ +EA ++ ++N +KPN V ++
Sbjct: 377 CGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSI 436
Query: 156 LGGC 159
L C
Sbjct: 437 LPAC 440
>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Vitis vinifera]
Length = 709
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/352 (50%), Positives = 247/352 (70%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y +S F N+ + + L+DMY KCG + AR +F +ME + +W+AMI G A+HG
Sbjct: 358 QLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHG 417
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A +A++ F +M G+KPN V F+ +L AC H G VDE ++F SMT +Y IIP +EHY
Sbjct: 418 HAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHY 477
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+ DLL R G L+EAYEFI +M I+P G VW LL CRVHKNI+LAE+ S++L +DP
Sbjct: 478 AAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDP 537
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +V+LSNIY+ A RW+D ++R MR+ G+KK P S I + VH FVAGD++HP
Sbjct: 538 QNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHP 597
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++I + + LL+ M+ +GY+ +T+ VL D+EE++K L HSE+LA+TFG+++TP G
Sbjct: 598 YYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAG 657
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IR+ KNLRVC DCH A K IS+IV REIVVRD +RFH F+ G CSCGD+W
Sbjct: 658 TTIRVTKNLRVCVDCHTATKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 709
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 86/162 (53%), Gaps = 4/162 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ ++G+ ++ + ++LIDMY KC ++ + RVF + + +W+++I G +G
Sbjct: 258 IHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGM 317
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHY 120
E L F +M+ IKPN V+F ++ AC H+ + G++ Y + + + +
Sbjct: 318 FDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFD--GNVFIA 375
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ ++ G ++ A M + + V W A++ G +H
Sbjct: 376 SALVDMYAKCGNIRTARWIFDKMELY-DMVSWTAMIMGYALH 416
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 33/179 (18%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLE-----------------------------GARRVFIE 40
G ++ CN L++MY K LE R+VF
Sbjct: 136 GMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEM 195
Query: 41 MEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG 100
M +R + +W+ +I G A +G ++AL +M ++P+ T +L + +G
Sbjct: 196 MPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKG 255
Query: 101 RRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
+ + G + ++D+ ++ + ++ +P + +G+ W +++ GC
Sbjct: 256 KE-IHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLP-QHDGISWNSIIAGC 312
>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 173/351 (49%), Positives = 242/351 (68%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +S +NI V L+DMY KCG + AR++F + +R V TW+AMI G HG
Sbjct: 472 IHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGL 531
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ AL F+KM + ++PN +T++ ++ AC H G VDEG R F SM +YG+ P ++HYG
Sbjct: 532 GRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYG 591
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
MVDLL RAG ++EA++FI NMPI P V+GA+LG C++HKNI++ E+A+++L +L+P
Sbjct: 592 AMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPD 651
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
GYHV+L+NIYA +W VA VRK M G+KKTPG S + + VH F +G THPQ
Sbjct: 652 EGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQ 711
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I+ E+L+ +K GY+P+T+++ LD+E+ +E+ L HSEKLA+ FGL+NT PGT
Sbjct: 712 SKRIYAFLEELVYEIKAAGYVPDTNLI-LDVEDDVQEQLLNSHSEKLAIAFGLLNTSPGT 770
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I + KNLRVC DCH A K IS + REI+VRD RFH F+ G CSCGDYW
Sbjct: 771 TIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 127/267 (47%), Gaps = 14/267 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ ++GF + + + L DMY KCG +E AR +F M+++TV +W++M+ G +G+
Sbjct: 270 IHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGE 329
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++A+ F KM+E GI P GVT + LHAC +G ++ G +F + + + I
Sbjct: 330 PEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERG-KFVHKFVDQLNLGSDISVMN 388
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
++ + S+ + A + N+ + + V W A++ G + + A ++ L
Sbjct: 389 SLISMYSKCKRVDIASDIFNNLNGRTH-VSWNAMILGYAQNGRVSEALNCFSEMKSLGMK 447
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ + +V S I A AE V R K + L ++ + +V + H
Sbjct: 448 PDSFTMV-SVIPALAEL--SVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIH-M 503
Query: 242 AEKIFQM--------WEKLLDGMKLKG 260
A K+F M W ++DG G
Sbjct: 504 ARKLFDMISDRHVITWNAMIDGYGTHG 530
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 78/158 (49%), Gaps = 4/158 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + F N+ +++MY KC ++ A ++F M ER + +W+ +I G + +G
Sbjct: 169 IHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGF 228
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHY 120
AK+AL +M + G +P+ +T + +L A +G + G+ Y++ + + I
Sbjct: 229 AKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNIS-- 286
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ D+ S+ G ++ A M K V W +++ G
Sbjct: 287 TALADMYSKCGSVETARLIFDGMDQK-TVVSWNSMMDG 323
Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 61/138 (44%), Gaps = 2/138 (1%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
L+ ++ K G + A RVF ++++ + M++G A + + AL +M +KP
Sbjct: 87 LVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPV 146
Query: 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFI 140
F LL CG + G+ + T + +V++ ++ + +AY+
Sbjct: 147 VYNFTYLLKVCGDNADLKRGKEIHGQLITN-SFAANVFAMTGVVNMYAKCRQIDDAYKMF 205
Query: 141 RNMPIKPNGVVWGALLGG 158
MP + + V W ++ G
Sbjct: 206 DRMP-ERDLVSWNTIIAG 222
>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 660
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 172/352 (48%), Positives = 247/352 (70%), Gaps = 1/352 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH+++ + N+ + N LIDMY KCGCL AR VF +M+ R V +W+++I G
Sbjct: 310 RVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCG 369
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q ++A+ F +M G+ P+ + F+ +L AC H G +D+GR +++++ E GI P++EH+
Sbjct: 370 QGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGR-YYFNLMAECGITPKLEHF 428
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL RAG + EAY FIR MP++P+ VWG LL CRV+ N+++ A+ +L L+P
Sbjct: 429 ACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRVYSNMNIGILAADKLLMLNP 488
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++GY+V+LSNIYA+A RW DVA +R +M G+KK PG S++ ++ VH F+AGD +HP
Sbjct: 489 EHSGYYVLLSNIYAKAGRWADVAAIRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSHP 548
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q++KI++ + L+ MK GY+P T L D+EE++KE L HSEKLA+ F ++NT PG
Sbjct: 549 QSKKIYEELDVLVGKMKELGYMPETDSALHDVEEEDKEYHLAVHSEKLAVAFAIINTKPG 608
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPIR+ KNLRVC DCH A KLIS+I REI++RD +RFH FQ G CSCGDYW
Sbjct: 609 TPIRVTKNLRVCGDCHVAAKLISKIAEREIIIRDTHRFHHFQEGCCSCGDYW 660
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G N+ V N LI MY KC L+ A++V E+ R V +W++M+ A +G
Sbjct: 141 QIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNG 200
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90
+ +AL +M + +KPN T LL A
Sbjct: 201 RFNDALELCREMEALNLKPNDCTMASLLPA 230
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Query: 35 RRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM 94
+ +F+++ +++V +W+ MI + KEA+ +++M G++P+ V+ + +L A G +
Sbjct: 243 KEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDL 302
Query: 95 GWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGA 154
+ GRR + ++P + ++D+ ++ G L++A M + + V W +
Sbjct: 303 SALSLGRR-VHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFR-DVVSWTS 360
Query: 155 LLGG 158
++
Sbjct: 361 IISA 364
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 76/173 (43%), Gaps = 2/173 (1%)
Query: 7 NQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEAL 66
N R N V L+ +Y CG AR +F E+ ++ V ++ MI+ + K+AL
Sbjct: 46 NDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDAL 105
Query: 67 TSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126
+ M G P+ T+ +L A + G + + + G+ + ++ +
Sbjct: 106 LVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQ-IHGAVLKIGLDLNLYVGNGLIAM 164
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
+ L+EA + + +P + + V W +++ + + A E R+++ L+
Sbjct: 165 YGKCKSLKEAQQVLDEIPCR-DVVSWNSMVSVYAQNGRFNDALELCREMEALN 216
>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
Length = 742
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/351 (50%), Positives = 241/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Q ++ + L+DMY+KCG ++ A VF M ER V TW+AMI GLA +G
Sbjct: 392 LHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGM 451
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K+AL SF +M G +P VT+I +L AC H +DEGR F M + + + PQ+EHYG
Sbjct: 452 GKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYG 511
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CM+DLL+R+G L EA ++ MP++PN V+WG++L CRVHKNIDLA A+ L +L P
Sbjct: 512 CMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSILSACRVHKNIDLARHAAEHLLKLAPE 571
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ +V L NIY ++ +W D RVR LM GVKKT G+SSITV G VH+FVA D++HP
Sbjct: 572 EDAVYVQLYNIYIDSRQWADAKRVRMLMEERGVKKTAGYSSITVAGQVHKFVANDQSHPW 631
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I M E++ +K GY P TS + +D++E+EKE+ L HSEK+A+ FGL++ PP
Sbjct: 632 TLEIMAMMEEIACRLKSVGYSPVTSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPSL 691
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PI I+KNLRVCEDCH+A KL+S++ NREI+VRDR+RFH F+ G+CSC D+W
Sbjct: 692 PIHIVKNLRVCEDCHSAIKLVSQLWNREIIVRDRSRFHHFRDGACSCNDFW 742
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 6/175 (3%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N +ID Y K G ++ AR +F +M R V T+++MI G G+ ++AL F +M G++
Sbjct: 308 NAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMR 367
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG-CMVDLLSRAGFLQEAY 137
+ T + LL AC +G + GR S+ E I+ + + G ++D+ + G + EA
Sbjct: 368 ADNFTVVSLLTACASLGALPHGRALHASI--EQRIVEEDVYLGTALLDMYMKCGRVDEAT 425
Query: 138 EFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL--DQLDPLNNGYHVVLS 190
M + + W A++ G + A E+ Q+ D P + Y VL+
Sbjct: 426 AVFHRMGER-DVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLT 479
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
++ V T+I V+ G L+ ARR+ ++ ER V +W+++I G + G+ +A+ FN M
Sbjct: 169 KDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCM 228
Query: 73 IEIGIKPNGVTFIGLLHACGHM 94
+ G+ P+ V IG L AC +
Sbjct: 229 LSDGVAPDEVAVIGALSACSKL 250
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/351 (50%), Positives = 242/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ +G+ ++ + + L+ MY KCG ++ AR VF +M ER V W+AMI G A HG+
Sbjct: 421 IHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGR 480
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL F +M + GIKP+ VTF +L AC H+G V+EGR+ F SM +YGI P +EHY
Sbjct: 481 CREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYS 540
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C VDLL RAG L+EA I MP +P VWGALL CR+H +++ E A+ + +LDP
Sbjct: 541 CFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPD 600
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +V LSNIYA A R+ED +VR++M V K PG S I VDG VH F D++HP+
Sbjct: 601 DDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPE 660
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A++I+ KL + +K +GY+P+T VL D++E++K + L HSE+LA+T+GLM TPPGT
Sbjct: 661 AKEIYAELGKLTEQIKEQGYVPDTRFVLHDVDEEQKVQTLCSHSERLAITYGLMKTPPGT 720
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVC DCH A K IS++V REI+ RD +RFH F G CSCGD+W
Sbjct: 721 PIRIVKNLRVCGDCHTASKFISKVVGREIIARDAHRFHHFVDGVCSCGDFW 771
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 107/228 (46%), Gaps = 4/228 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y QSG+ R I V N LI MY KCG L+ AR++F ++ R V TW+AM+ G A G
Sbjct: 319 KVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLG 378
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA+ F +M + GIKP+ +TF L +C ++ EG+ + G +
Sbjct: 379 FHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKS-IHQQLVHAGYSLDVYLQ 437
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ--L 178
+V + ++ G + +A + N + N V W A++ GC H A E Q+ + +
Sbjct: 438 SALVSMYAKCGSMDDA-RLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGI 496
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD 226
P + VLS E R + + G+K S VD
Sbjct: 497 KPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVD 544
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 2/182 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH +SG + N + NTL+ MY KCG L ARRVF + +R + +W+AMI+ Q
Sbjct: 118 VHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQ 177
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA + M G KP+ VTF+ LL+A + + G++ + + G+ +
Sbjct: 178 NLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEI-AKAGLELEPRVGT 236
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+V + ++ G + +A +P K N V W L+ G +D+A E ++ Q +
Sbjct: 237 SLVGMYAKCGDISKAQVIFDKLPEK-NVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVA 295
Query: 182 NN 183
N
Sbjct: 296 PN 297
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 4/159 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH ++G RV +L+ MY KCG + A+ +F ++ E+ V TW+ +I G A G
Sbjct: 218 KVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQG 277
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEH 119
Q AL KM + + PN +T+ +L C ++ G++ Y + + YG +I
Sbjct: 278 QVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYG--REIWV 335
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + + G L+EA + ++P + + V W A++ G
Sbjct: 336 VNALITMYCKCGGLKEARKLFGDLPHR-DVVTWTAMVTG 373
>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
Length = 515
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/334 (53%), Positives = 234/334 (70%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
LIDMY KCG A VF +M ER + W+AMI GL + G K A +M + G+K
Sbjct: 182 TALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGVK 241
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
N TFIGLL +C H G V++GR++F++MT Y I P+IEHYGCMVDL SRAG L+EA++
Sbjct: 242 LNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEAHQ 301
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAER 198
I +MP+ N VVWGALLGGC++H+N DLAE A +QL +L+P N+G +V+LSNIY+ + R
Sbjct: 302 LIGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLIRLEPWNSGNYVMLSNIYSNSGR 361
Query: 199 WEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKL 258
WED A++R M+ G++K P S + +DG VH+F GD++HP ++KI+ ++L MK
Sbjct: 362 WEDAAKLRLEMKAKGIEKVPASSWVELDGKVHKFYVGDDSHPLSDKIYAKLDELGMEMKA 421
Query: 259 KGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAA 318
GY P T VV+ D+E +EKE L HSEK+A+ F L+ T PG IR+ KNLRVC DCH+A
Sbjct: 422 MGYEPTTEVVMFDVENEEKENTLVHHSEKIAIAFSLITTEPGETIRVTKNLRVCTDCHSA 481
Query: 319 FKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
KLIS I REIVVRD NRFHCF+ G CSC DYW
Sbjct: 482 IKLISRITCREIVVRDNNRFHCFRDGHCSCNDYW 515
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 14/158 (8%)
Query: 7 NQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEAL 66
+ G ++ V +D+YVKCG +E AR VF EM+ R W AM+ G A +G +EAL
Sbjct: 69 QEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYASNGHPREAL 128
Query: 67 TSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG----- 121
F M G KP+ T +G L AC +G +D GR+ G++ E G
Sbjct: 129 DLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQ-------AVGMVHWDEVLGNPVLG 181
Query: 122 -CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ ++ G EA+ + M ++ + +VW A++ G
Sbjct: 182 TALIDMYAKCGSTSEAWMVFQQM-LERDIIVWNAMILG 218
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 41 MEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG 100
M + +W+A+I G A EA+ + G++P+ T + +L AC + ++ G
Sbjct: 1 MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60
Query: 101 RRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ + E G+ + +DL + G +++A M + + V WGA++GG
Sbjct: 61 EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNR-DAVAWGAMVGG 117
>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Brachypodium distachyon]
Length = 747
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/354 (50%), Positives = 240/354 (67%), Gaps = 2/354 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H S + G ++ V LID+Y KCG L A +F +M R+ W+A+I GL +HG
Sbjct: 394 RMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHG 453
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EALT F++M + GIKP+ VTF+ LL AC H G VD+GR FF M Y I+P +HY
Sbjct: 454 HGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHY 513
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM D+L RAG L EA+ FI+NMPIKP+ VWGALLG CR+H N+++ + AS+ L +LDP
Sbjct: 514 ACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDP 573
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET-- 238
N GY+V++SN+YA+ +W+ V VR L+R ++KTPGWSSI V V+ F +G++T
Sbjct: 574 ENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQTEP 633
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
HPQ E+I LL ++ GY+ + S VL D+E+ EKE L HSE+LA+ FG++NTP
Sbjct: 634 HPQHEEIQAELRSLLAKIRSVGYVSDYSFVLQDVEDDEKEHILNNHSERLAIAFGIINTP 693
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TP+ I KNLRVC DCH A K IS+I REI+VRD NRFH F+ G CSCGD+W
Sbjct: 694 SRTPLHIYKNLRVCGDCHNATKYISQITEREIIVRDSNRFHHFKDGHCSCGDFW 747
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
+I N ++DMY K +E A+R+F M + +W+ +I G +G A EA+ + M
Sbjct: 305 DIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQ 364
Query: 74 EI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ G+K TF+ +L A H+G + +G R ++++ + G+ + C++DL ++ G
Sbjct: 365 KHEGLKAIQGTFVSVLPAYSHLGALQQGMR-MHALSIKIGLNVDVYVGTCLIDLYAKCGK 423
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
L EA MP + G W A++ G VH
Sbjct: 424 LAEAMLLFEKMPRRSTG-PWNAIISGLGVH 452
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 1/157 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ + G + + VCN LID+Y K G LE A+ VF ME R + TW+++I G GQ
Sbjct: 191 MHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQ 250
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AL F M G+ P+ +T + L A G + + + I
Sbjct: 251 TAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGN 310
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ ++ ++ A +MP++ + V W L+ G
Sbjct: 311 AIVDMYAKLSNIEAAQRMFDSMPVQ-DSVSWNTLITG 346
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 76/149 (51%), Gaps = 4/149 (2%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
R ++ +L+ Y++ G + A +VF EM ER V W+AM+ GL + +A EA+ F +
Sbjct: 100 RPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGR 159
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF-FYSMTTEYGIIPQIEHYGCMVDLLSRA 130
M+ G+ + VT +L C +G D+ + ++G+ ++ ++D+ +
Sbjct: 160 MVGEGVAGDTVTVSSVLPMCVLLG--DQVLALVMHVYAVKHGLDKELFVCNALIDVYGKL 217
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
G L+EA M + + V W +++ GC
Sbjct: 218 GMLEEAQCVFHGMECR-DLVTWNSIISGC 245
>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
Length = 1005
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 172/345 (49%), Positives = 234/345 (67%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
Q GF N V N+LIDMY KCG L + ++F EM+ + +W+AM+ G A+HG A+
Sbjct: 661 QMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIA 720
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F+ M E ++ + V+F+ +L AC H G V+EGR+ F+SM+ +Y I P +EHY CMVDLL
Sbjct: 721 LFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLL 780
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV 187
RAG E FI+ MP++P+ VWGALLG CR+H N+ L E A L +L+P N + V
Sbjct: 781 GRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFV 840
Query: 188 VLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQ 247
VLS+IYA++ RW D + R M +LG+KKTPG S + + VH F GD++HPQ E +
Sbjct: 841 VLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHL 900
Query: 248 MWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMK 307
+W LL+ M+ GY+P+ S VL ++EE++KE FLY HSE+LA+TF L+NTPPG+ I+I+K
Sbjct: 901 LWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVK 960
Query: 308 NLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
NLRVC DCH K IS+I R I+VRD RFH F+ G CSC DYW
Sbjct: 961 NLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 10/185 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIHG 60
+H + GF + V N LIDMY KCG L A +F + + + TW+ +I +G
Sbjct: 553 IHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNG 612
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
AKEA++SF++M PN VTF+ +L A ++ EG F++ + G +
Sbjct: 613 HAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA-FHACIIQMGFLSNTLVG 671
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNID-------LAEEASR 173
++D+ ++ G L + + M K + V W A+L G VH + D L +E+
Sbjct: 672 NSLIDMYAKCGQLXYSEKLFNEMDHK-DTVSWNAMLSGYAVHGHGDRAIALFSLMQESQV 730
Query: 174 QLDQL 178
Q+D +
Sbjct: 731 QIDSV 735
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + Q +I V L+ MY KCG E A+++F ++ R + WSA+I L G
Sbjct: 351 IHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGY 410
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL+ F +M +KPN VT + +L AC + + G+ + T + + +
Sbjct: 411 PEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKS-IHCFTVKADMDSDLSTGT 469
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V + ++ GF A M + + V W +L+ G
Sbjct: 470 ALVSMYAKCGFFTAALTTFNRMSSR-DIVTWNSLING 505
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 1/157 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ ++ ++ L+ MY KCG A F M R + TW+++I G A G
Sbjct: 452 IHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGD 511
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+ F K+ I P+ T +G++ AC + +D+G + + + G
Sbjct: 512 PYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQG-TCIHGLIVKLGFESDCHVKN 570
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ ++ G L A + V W ++
Sbjct: 571 ALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 18/163 (11%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H ++ G R++ + L+DMY K G L+ AR VF +M +R V W+AMI GL+
Sbjct: 152 HGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDP 211
Query: 63 KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR-------RFFYSMTTEYGIIP 115
EA+ F M +G++P+ V+ + L + ++ R R +S G+I
Sbjct: 212 CEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLI- 270
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
DL S+ G + A M + + V WG ++ G
Sbjct: 271 ---------DLYSKCGDVDVARRVFDQM-VDQDDVSWGTMMAG 303
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H SGF+ + + + LI++Y + AR VF + W++MI+
Sbjct: 50 QIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSK 108
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q EAL + M+E G++P+ TF +L AC + EG +F+ G+ +
Sbjct: 109 QYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEG-VWFHGEIDRRGLERDVFIG 167
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ S+ G L+ A E MP K + V W A++ G
Sbjct: 168 AGLVDMYSKMGDLKRAREVFDKMP-KRDVVAWNAMIAG 204
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 78/184 (42%), Gaps = 35/184 (19%)
Query: 11 FRRNIR--VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
FRR+ V N LID+Y KCG ++ ARRVF +M ++ +W M+ G A +G E L
Sbjct: 257 FRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLEL 316
Query: 69 FNKMIEIGIKPNGVTFIGL---------------LHACGHMGWVDEGRRFFYSMTTEYGI 113
F+KM ++ N V+ + +H C +D + Y
Sbjct: 317 FDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAK 376
Query: 114 IPQIEH---------------YGCMVDLLSRAGFLQEA---YEFIRNMPIKPNGVVWGAL 155
+ E + ++ L + G+ +EA ++ ++N +KPN V ++
Sbjct: 377 CGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSI 436
Query: 156 LGGC 159
L C
Sbjct: 437 LPAC 440
>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 573
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 171/350 (48%), Positives = 240/350 (68%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
++Y ++GF ++ + +IDMY KCG +E AR VF M+E+ V +WSAMI HG+
Sbjct: 224 NDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRG 283
Query: 63 KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC 122
K+A+ F+ M+ I PN VTF+ LL+AC H G ++EG RFF SM E+ + P ++HY C
Sbjct: 284 KDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTC 343
Query: 123 MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182
MVDLL RAG L EA I M ++ + +W ALLG CR+H ++LAE+A+ L +L P N
Sbjct: 344 MVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGACRIHSKMELAEKAANSLLELQPQN 403
Query: 183 NGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQA 242
G++V+LSNIYA+A +WE VA+ R +M +KK PGW+ I VD ++F GD +HPQ+
Sbjct: 404 PGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKIPGWTWIEVDNKTYQFSVGDRSHPQS 463
Query: 243 EKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTP 302
++I++M L+ +++ GY+P+T VL D+EE+ K++ LY HSEKLA+ FGL+ P G P
Sbjct: 464 KEIYEMLMSLIKKLEMAGYVPDTDFVLQDVEEEVKQEMLYTHSEKLAIAFGLIAIPEGEP 523
Query: 303 IRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI KNLRVC DCH K++S I+ R I+VRD NRFH F G+CSCGDYW
Sbjct: 524 IRISKNLRVCGDCHTFSKMVSSIMRRSIIVRDANRFHHFNDGTCSCGDYW 573
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 3/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ + G + VC +L+DMY KC +E A+R+F M + + TW+ MI A
Sbjct: 123 IHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYA-DCN 181
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A E+L F++M E G+ P+ V + +++AC +G + RF G +
Sbjct: 182 AYESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRA-RFANDYIVRNGFSLDVILGT 240
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
M+D+ ++ G ++ A E M K N + W A++ H
Sbjct: 241 AMIDMYAKCGSVESAREVFDRMKEK-NVISWSAMIAAYGYH 280
>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
Length = 677
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/352 (50%), Positives = 244/352 (69%), Gaps = 1/352 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+HEY + R N+ + N LIDMY KCGCL+ AR VF +M R V +W++MI + G
Sbjct: 327 RIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSG 386
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q K+A+ F KM + G P+ + F+ +L AC H G VDEGR + +++ EYGI P IEHY
Sbjct: 387 QGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGR-YCFNLMAEYGITPGIEHY 445
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG + EAY R MP++PN VWG+LL CRV+ ++++A A+ L QL P
Sbjct: 446 NCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAP 505
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+GY+V+LSNIYA+A RW+DV VR +M + G+KK PG S++ ++ V+ F+AGD++H
Sbjct: 506 EQSGYYVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSHT 565
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q+++I++ L+ MK GY+P T L D+EE++KE L HSEKLA+ F ++NT PG
Sbjct: 566 QSKEIYKALGVLVGRMKELGYMPETDSALHDVEEEDKECHLAVHSEKLAIVFAILNTKPG 625
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ IRI KN+RVC DCH A KLIS+I REI++RD +RFH F+ G CSCGDYW
Sbjct: 626 STIRITKNIRVCGDCHVATKLISKIAEREIIIRDTHRFHHFRDGVCSCGDYW 677
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G N+ + N L+ MY KC L+ ARRV EM R + +W++M+ G A +G
Sbjct: 158 QIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNG 217
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHA-----CGHMGWVDEGRRFFYSMTTEYGIIP 115
+ +AL +M ++ +KP+ T LL A C ++ +V + + E +I
Sbjct: 218 RFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKD----MFVKLKEKSLIS 273
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGC 159
+ M+ + EA + M ++P+ V ++L C
Sbjct: 274 ----WNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPAC 316
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/174 (19%), Positives = 77/174 (44%), Gaps = 19/174 (10%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVK-----------------CGCLEGARRVFIEMEER 44
V Y+ F +++C + D+ +K C + + +F++++E+
Sbjct: 210 VAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEK 269
Query: 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF 104
++ +W+ MI + EA+ + +M G++P+ V+ +L ACG + GRR
Sbjct: 270 SLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRR-I 328
Query: 105 YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ + P + ++D+ ++ G L+EA M + + V W +++
Sbjct: 329 HEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFR-DVVSWTSMISA 381
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 62/151 (41%), Gaps = 12/151 (7%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVF----TWSAMIQGLAIHGQAKEALTS 68
+N+ N +I YV G + A VF M + + T+ +++ ++ G L
Sbjct: 100 KNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQI 159
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
++++G+ N GL+ G W+D RR M + + MV +
Sbjct: 160 HGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGR-----DMVSWNSMVAGYA 214
Query: 129 RAGFLQEAYEFIRNM---PIKPNGVVWGALL 156
+ G +A + R M +KP+ G+LL
Sbjct: 215 QNGRFNDALKLCREMEDLKLKPDAGTMGSLL 245
>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
Length = 602
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 170/351 (48%), Positives = 245/351 (69%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V + + G +++ +CN LID KCG ++GA VF M++R+V +W+++I LA+ G+
Sbjct: 252 VRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGR 311
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA+ F +M G+ P+ V FIG+L AC H G VDEG +F +M EYGI P+IEHYG
Sbjct: 312 GKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYG 371
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+ RAG ++ A EF+R MPI+PN V+W +L+ CR H ++L E +R L P
Sbjct: 372 CMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPA 431
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ +++LSN++A +RW++ + +R+ M G+KK PG S + +DG VHEF+AGDE+HPQ
Sbjct: 432 HEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQ 491
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ I++M E++ ++ G+I TS VLLD++E++KE L HSEKLA+ F L+ TPPGT
Sbjct: 492 YKDIYRMVEEMARELRRVGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFALLRTPPGT 551
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+R++KNLRVC DCHAA K IS++ REIVVRDR+RFH F+ GSCSC D+W
Sbjct: 552 QVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 84/221 (38%), Gaps = 31/221 (14%)
Query: 58 IHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM-GWVDEGRRF------FYSMTTE 110
IH A F M+ + PN TF LL AC + G D G + F T +
Sbjct: 103 IHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQ 162
Query: 111 YGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG----GCRVHKNID 166
Y I Y C GFL +A MP K + V W A++G G ++
Sbjct: 163 YVSNTLIHMYSCF-----GGGFLGDARNVFDRMP-KESAVTWSAMIGGYVRGGLSSDAVE 216
Query: 167 LAEEASRQLDQLDPLNN-GYHVVLSNIYA-EAERWEDVARVRKLMRNLGVKKTPGWSSIT 224
L E Q D + G +++ A E RW VR+ + G+ K+ +
Sbjct: 217 LFREMQANGVQADEVTVIGVLAAATDLGALELARW-----VRRFVEREGIGKSVTLCNAL 271
Query: 225 VD-----GVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKG 260
+D G V VA E Q + W ++D + ++G
Sbjct: 272 IDTLAKCGDVDGAVAVFEGMQQRSVV--SWTSVIDALAMEG 310
>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 170/351 (48%), Positives = 242/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+ Y + + + + N L+DM+ KCG ++ A +F M +RT+ +W+++I GLA+HG+
Sbjct: 233 IESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGR 292
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA++ F +M G+ P + FIGLL AC H G V+ GR++F MT ++GI+P+IEHYG
Sbjct: 293 GLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYG 352
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLLSRAG + EA EF+ MPI+PN ++W L+ CRVH + L E S+QL + +P+
Sbjct: 353 CMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNEPM 412
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ +V+LSNIY + WE +++R M G++K PG + I +D +HEF+ GD +H Q
Sbjct: 413 HESNYVLLSNIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEIHEFIVGDRSHNQ 472
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I +M ++ MK GY P T+ V LDI+E++KE L RHSEKLA+ F L+NTPPG+
Sbjct: 473 YNEIIKMVNEMGREMKRAGYAPTTTEVFLDIDEEDKEDALSRHSEKLAIAFALLNTPPGS 532
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH+A K IS+I NREIV+RDR+RFH F+ G CSCGD+W
Sbjct: 533 PIRITKNLRVCGDCHSASKFISKIYNREIVMRDRSRFHHFRDGQCSCGDFW 583
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKC-GCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
VH + GF +I V NT++ MY C G +E AR++F EM + TW+AMI G A G
Sbjct: 131 VHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLG 190
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q+ A+ F KM G+ P+ VT + +L AC +G ++ G ++ S + ++ +E
Sbjct: 191 QSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELG-KWIESYIEKERVLKTVELS 249
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ ++ G + +A RNM K V W +++ G +H
Sbjct: 250 NALVDMFAKCGDVDKALGLFRNMS-KRTIVSWTSVIVGLAMH 290
Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 7/163 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTV---FTWSAMIQGLA 57
++H + + GF+ N V + A + +E+ V F +S +I+ A
Sbjct: 25 QLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLVFSVEDARVYDAFLFSTIIRAYA 84
Query: 58 IHGQAK-EALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ 116
Q+K A+ +N M+ GI PN F +L AC + ++ G+ S+ ++G
Sbjct: 85 ESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAVHGSL-VKFGFDDD 143
Query: 117 IEHYGCMVDLL-SRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
I MV + +G ++ A + MP K + V W A++GG
Sbjct: 144 IFVQNTMVHMYCCCSGGMEFARKLFDEMP-KLDPVTWTAMIGG 185
>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
Length = 861
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 174/351 (49%), Positives = 241/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+ +Y + F+ ++ + +IDM+ KCGC+E AR +F MEE+ V +WSAMI HGQ
Sbjct: 511 IDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQ 570
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL F M+ GI PN +T + LL+AC H G V+EG RFF M +Y + ++HY
Sbjct: 571 GRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYT 630
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL RAG L EA + I +M ++ + +WGA LG CR HK++ LAE+A+ L +L P
Sbjct: 631 CVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQ 690
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G++++LSNIYA A RWEDVA+ R LM +KK PGW+ I VD H+F GD THP+
Sbjct: 691 NPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPR 750
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I++M + L + ++L GY+P+T+ VL D++E+ K LY HSEKLA+ FGL+ TP T
Sbjct: 751 SKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHT 810
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVC DCH KL+S I R I+VRD NRFH F+ G+CSCGDYW
Sbjct: 811 PIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 861
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+ +Y + F+ ++ + +IDMY KCGC+E AR +F MEE+ V +WSAMI HGQ
Sbjct: 281 IDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQ 340
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL F M+ G+ P+ +T LL+AC + + + R+ ++ + +G++ +
Sbjct: 341 GRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQ-VHAQASVHGMLQNLIVAN 399
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V S L +AY M ++ + V W ++GG
Sbjct: 400 KLVHFYSYYRALDDAYGLFDGMCVR-DSVSWSVMVGG 435
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 12/155 (7%)
Query: 20 TLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP 79
L+DMYVKC +E AR +F +M+ER + TW+ MI G A G+A E+L F KM E G+ P
Sbjct: 198 ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVP 257
Query: 80 NGVTFIGLLHACGHMGWVDEGR---RFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
+ V + ++ AC +G + + R + + +I M+D+ ++ G ++ A
Sbjct: 258 DKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGT----AMIDMYAKCGCVESA 313
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVH----KNIDL 167
E M K N + W A++ H K +DL
Sbjct: 314 REIFDRMEEK-NVISWSAMIAAYGYHGQGRKALDL 347
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 81/199 (40%), Gaps = 34/199 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLA--- 57
+VH ++ G +N+ V N L+ Y L+ A +F M R +WS M+ G A
Sbjct: 381 QVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVG 440
Query: 58 -------------------------IHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACG 92
G A E+L F+KM E G+ P+ V + ++ AC
Sbjct: 441 DYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACA 500
Query: 93 HMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVW 152
+G + + R + + + I M+D+ ++ G ++ A E M K N + W
Sbjct: 501 KLGAMHKARTIDDYIQRKKFQLDVILGTA-MIDMHAKCGCVESAREIFDRMEEK-NVISW 558
Query: 153 GALLGGCRVH----KNIDL 167
A++ H K +DL
Sbjct: 559 SAMIAAYGYHGQGRKALDL 577
>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 705
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 174/351 (49%), Positives = 241/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+ +Y + F+ ++ + +IDM+ KCGC+E AR +F MEE+ V +WSAMI HGQ
Sbjct: 355 IDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQ 414
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL F M+ GI PN +T + LL+AC H G V+EG RFF M +Y + ++HY
Sbjct: 415 GRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYT 474
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL RAG L EA + I +M ++ + +WGA LG CR HK++ LAE+A+ L +L P
Sbjct: 475 CVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQ 534
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G++++LSNIYA A RWEDVA+ R LM +KK PGW+ I VD H+F GD THP+
Sbjct: 535 NPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPR 594
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I++M + L + ++L GY+P+T+ VL D++E+ K LY HSEKLA+ FGL+ TP T
Sbjct: 595 SKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHT 654
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVC DCH KL+S I R I+VRD NRFH F+ G+CSCGDYW
Sbjct: 655 PIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 705
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 90/159 (56%), Gaps = 6/159 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+ +Y + F+ ++ + +IDMY KCGC+E AR +F MEE+ V +WSAMI HGQ
Sbjct: 153 IDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQ 212
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL F M+ G+ P+ +T LL+AC + + G R + + ++G+ ++H+
Sbjct: 213 GRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMG-RLIHHIVYKFGL--DLDHFV 269
Query: 122 C--MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
C +VD+ + +++A MP + + V W ++GG
Sbjct: 270 CAALVDMYGKCREIEDARFLFDKMP-ERDLVTWTVMIGG 307
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 87/173 (50%), Gaps = 12/173 (6%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G + VC L+DMYVKC +E AR +F +M+ER + TW+ MI G A G+
Sbjct: 52 IHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGK 111
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR---RFFYSMTTEYGIIPQIE 118
A E+L F KM E G+ P+ V + ++ AC +G + + R + + +I
Sbjct: 112 ANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGT- 170
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDL 167
M+D+ ++ G ++ A E M K N + W A++ H K +DL
Sbjct: 171 ---AMIDMYAKCGCVESAREIFDRMEEK-NVISWSAMIAAYGYHGQGRKALDL 219
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 6/170 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G + VC L+DMY KC +E AR +F +M ER + TW+ MI G A G
Sbjct: 254 IHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGN 313
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A E+L F+KM E G+ P+ V + ++ AC +G + + R + + + I
Sbjct: 314 ANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTA 373
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDL 167
M+D+ ++ G ++ A E M K N + W A++ H K +DL
Sbjct: 374 -MIDMHAKCGCVESAREIFDRMEEK-NVISWSAMIAAYGYHGQGRKALDL 421
>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 602
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 170/351 (48%), Positives = 245/351 (69%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V + + G +++ +CN LID KCG ++GA VF M++R+V +W+++I LA+ G+
Sbjct: 252 VRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGR 311
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA+ F +M G+ P+ V FIG+L AC H G VDEG +F +M EYGI P+IEHYG
Sbjct: 312 GKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYG 371
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+ RAG ++ A EF+R MPI+PN V+W +L+ CR H ++L E +R L P
Sbjct: 372 CMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPA 431
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ +++LSN++A +RW++ + +R+ M G+KK PG S + +DG VHEF+AGDE+HPQ
Sbjct: 432 HEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQ 491
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ I++M E++ ++ G+I TS VLLD++E++KE L HSEKLA+ F L+ TPPGT
Sbjct: 492 YKDIYRMVEEMARELRRVGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFALLRTPPGT 551
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+R++KNLRVC DCHAA K IS++ REIVVRDR+RFH F+ GSCSC D+W
Sbjct: 552 QVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 84/221 (38%), Gaps = 31/221 (14%)
Query: 58 IHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM-GWVDEGRRF------FYSMTTE 110
IH A F M+ + PN TF LL AC + G D G + F T +
Sbjct: 103 IHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQ 162
Query: 111 YGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG----GCRVHKNID 166
Y I Y C GFL +A MP K + V W A++G G +D
Sbjct: 163 YVSNTLIHMYSCF-----GGGFLGDARNVFDRMP-KESAVTWSAMIGGYVRGGLSSDAVD 216
Query: 167 LAEEASRQLDQLDPLNN-GYHVVLSNIYA-EAERWEDVARVRKLMRNLGVKKTPGWSSIT 224
L E Q D + G +++ A E RW VR+ + G+ K+ +
Sbjct: 217 LFREMQANGVQADEVTVIGVLAAATDLGALELARW-----VRRFVEREGIGKSVTLCNAL 271
Query: 225 VD-----GVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKG 260
+D G V VA E Q + W ++D + ++G
Sbjct: 272 IDTLAKCGDVDGAVAVFEGMQQRSVV--SWTSVIDALAMEG 310
>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/352 (50%), Positives = 246/352 (69%), Gaps = 1/352 (0%)
Query: 2 VHEY-SNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+H Y N + N+RV L+DMY KCG LE A VF + + + W+AMI G A+HG
Sbjct: 273 LHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHG 332
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+++AL F ++ + G+ P +TFIGLL+AC H G V+EGR FF SM EYGI P+IEHY
Sbjct: 333 DSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHY 392
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLL RAG ++EA+ ++++ I P+ V+W +LL CR+HKN+ L + + L
Sbjct: 393 GCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRIADFLVANGL 452
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G +++LSNIYA +WE+VARVR +M+ G++K PG S+I +D V+EFVAGD +HP
Sbjct: 453 ANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYEFVAGDMSHP 512
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++I+ M +K+ +K G++P T +VL D++E KEK L HSEKLA+ FGL+++ PG
Sbjct: 513 CTDEIYAMLDKMNALVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLAVAFGLISSRPG 572
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ I+I+KNLR C DCHA KLIS+I +R+IV RDRNRFH F GSC+CGDYW
Sbjct: 573 STIKIVKNLRACSDCHAVLKLISKITSRKIVFRDRNRFHHFVDGSCTCGDYW 624
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 2/160 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
++ Y G L+ ARR+F + + W+AMI G HG+ EAL F +M+ +
Sbjct: 189 TAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAE 248
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ VT + +L A +G V+ G+ + + + +VD+ + G L++A
Sbjct: 249 PDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVA 308
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL-DQ 177
+ K + VVW A++ G +H + A E QL DQ
Sbjct: 309 VFHGIGNK-DIVVWNAMINGYAMHGDSRKALEMFVQLRDQ 347
>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
Length = 619
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 172/351 (49%), Positives = 242/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V + + G +++ +CN LID KCG L+GA VF M+ERT+ +W+++I LA+ G+
Sbjct: 269 VGRFVEKEGIGKSVTLCNALIDALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGR 328
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA+ F +M G++P+ V FIG+L AC H G VDEG +F SM YGI P+IEHYG
Sbjct: 329 GKEAVAVFEEMKTAGVRPDDVAFIGVLTACSHAGMVDEGYGYFESMRMAYGIDPKIEHYG 388
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+ RAG ++ A EF+ MP+KPN ++W L+ CR H ++L E +R L P
Sbjct: 389 CMVDMFGRAGMVERAMEFVHKMPMKPNPIIWRTLVAACRAHGRLELGETITRNLLNEYPA 448
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ +V+LSN+YA RW++ + +R+ M G+KK PG S + +DG VHEF+AGDE+HPQ
Sbjct: 449 HEANYVMLSNVYALTRRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQ 508
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I+ M E++ ++ G+I TS VLLD++E++KE L HSEKLA+ F L+ TPPGT
Sbjct: 509 WKEIYMMVEEMARELRRAGHISATSEVLLDLDEEDKEVALQWHSEKLAIAFVLLRTPPGT 568
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+R++KNLRVC DCHAA K IS + NREI+VRDR+RFH F+ GSCSC D+W
Sbjct: 569 QVRVVKNLRVCSDCHAAIKCISLVYNREIIVRDRSRFHRFKNGSCSCNDFW 619
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 68/145 (46%), Gaps = 3/145 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCG--CLEGARRVFIEMEERTVFTWSAMIQGLAI 58
+ H + + GF + V NTLI MY G L AR VF M + + TWSAMI G
Sbjct: 165 QAHAAALKFGFTTDQYVSNTLIHMYSCFGGEFLGDARNVFDRMAKSSAVTWSAMIGGYVR 224
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
G + +A+ F +M G++P+ VT IG+L A E R+ + GI +
Sbjct: 225 SGLSSDAVGLFREMQASGVRPDEVTMIGVLAA-AADLGALELARWVGRFVEKEGIGKSVT 283
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNM 143
++D L++ G L A + M
Sbjct: 284 LCNALIDALAKCGDLDGAMAVFQGM 308
>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g37380, chloroplastic; Flags: Precursor
gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
Length = 632
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/352 (50%), Positives = 244/352 (69%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + S R N++VC LIDMY KCG LE A VF + + + W+AMI G A+HG
Sbjct: 281 IHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGY 340
Query: 62 AKEALTSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+++AL FN+M I G++P +TFIG L AC H G V+EG R F SM EYGI P+IEHY
Sbjct: 341 SQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHY 400
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GC+V LL RAG L+ AYE I+NM + + V+W ++LG C++H + L +E + L L+
Sbjct: 401 GCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNI 460
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G +V+LSNIYA +E VA+VR LM+ G+ K PG S+I ++ VHEF AGD H
Sbjct: 461 KNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHS 520
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++++I+ M K+ + +K GY+PNT+ VL D+EE EKE+ L HSE+LA+ +GL++T PG
Sbjct: 521 KSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPG 580
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+P++I KNLRVC DCH KLIS+I R+IV+RDRNRFH F GSCSCGD+W
Sbjct: 581 SPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 78/151 (51%), Gaps = 3/151 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ +I Y K G +E AR +F M ER + +W+ MI G A HG +AL F K+
Sbjct: 190 RSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKL 249
Query: 73 IEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
+ G KP+ +T + L AC +G ++ G R+ + I ++ ++D+ S+ G
Sbjct: 250 LAEGKPKPDEITVVAALSACSQIGALETG-RWIHVFVKSSRIRLNVKVCTGLIDMYSKCG 308
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
L+EA + P K + V W A++ G +H
Sbjct: 309 SLEEAVLVFNDTPRK-DIVAWNAMIAGYAMH 338
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/351 (50%), Positives = 242/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V Y ++ ++++ L+DM+ +CG A VF ME+R V W+A I +A+ G
Sbjct: 486 VCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGN 545
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ A+ FN+M+E +KP+ V F+ LL AC H G VD+GR+ F+SM +GI P I HYG
Sbjct: 546 TEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYG 605
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L+EA + I++MPI+PN VVWG+LL CR HKN++LA A+ +L QL P
Sbjct: 606 CMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPE 665
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
G HV+LSNIYA A +W DVARVR M+ GV+K PG SSI V G++HEF +GDE+H +
Sbjct: 666 RVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAE 725
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
I M E++ + GY+P+T+ VLLD++E+EKE L RHSEKLA+ +GL+ T G
Sbjct: 726 NTHIGLMLEEINCRLSEAGYVPDTTNVLLDVDEQEKEHLLSRHSEKLAMAYGLITTGQGI 785
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR++KNLR+C DCH+ KL+S++ NREI VRD NR+H F+ G CSC DYW
Sbjct: 786 PIRVVKNLRMCSDCHSFAKLVSKLYNREITVRDNNRYHFFKEGFCSCRDYW 836
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 73/131 (55%), Gaps = 1/131 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + G +I V N+LI Y +CG ++ R++F M ER V +W+++I G +
Sbjct: 151 QVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRD 210
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+KEA++ F +M E G++PN VT + ++ AC + ++ G++ S +E G+
Sbjct: 211 LSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVC-SYISELGMELSTIMV 269
Query: 121 GCMVDLLSRAG 131
+VD+ + G
Sbjct: 270 NALVDMYMKCG 280
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+V Y ++ G + + N L+DMY+KCG + AR++F E + + ++ ++ H
Sbjct: 252 KVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHE 311
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A + L ++M++ G +P+ VT + + AC +G + G+ ++ G+
Sbjct: 312 WASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKS-SHAYVLRNGLEGWDNIS 370
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++D+ + G + A + +MP K V W +L+ G +++LA
Sbjct: 371 NAIIDMYMKCGKREAACKVFEHMPNK-TVVTWNSLIAGLVRDGDMELA 417
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 86/199 (43%), Gaps = 33/199 (16%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H Y ++G + N +IDMY+KCG E A +VF M +TV TW+++I GL G
Sbjct: 355 HAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDM 414
Query: 63 KEALTSFNKMIE-------------------------------IGIKPNGVTFIGLLHAC 91
+ A F++M+E GI + VT +G+ AC
Sbjct: 415 ELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASAC 474
Query: 92 GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV 151
G++G +D ++ + + I ++ +VD+ SR G A + M K +
Sbjct: 475 GYLGALDLA-KWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRME-KRDVSA 532
Query: 152 WGALLGGCRVHKNIDLAEE 170
W A +G + N + A E
Sbjct: 533 WTAAIGVMAMEGNTEGAIE 551
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 10/158 (6%)
Query: 19 NTLIDMYVKCGCLEG---ARRVFIEMEER--TVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N LI V+ G LE AR F + + ++F ++ +I+G A G +A+ + +M+
Sbjct: 63 NKLIASSVQIGTLESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQML 122
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
+GI P+ TF LL AC + + EG + + + G+ I ++ + G +
Sbjct: 123 VMGIVPDKYTFPFLLSACSKILALSEGVQ-VHGAVLKMGLEGDIFVSNSLIHFYAECGKV 181
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
+ M ++ N V W +L+ G + DL++EA
Sbjct: 182 DLGRKLFDGM-LERNVVSWTSLING---YSGRDLSKEA 215
>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
Length = 1309
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 174/351 (49%), Positives = 241/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+ +Y + F+ ++ + +IDM+ KCGC+E AR +F MEE+ V +WSAMI HGQ
Sbjct: 959 IDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQ 1018
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL F M+ GI PN +T + LL+AC H G V+EG RFF M +Y + ++HY
Sbjct: 1019 GRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYT 1078
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL RAG L EA + I +M + + +WGA LG CR HK++ LAE+A+ L +L P
Sbjct: 1079 CVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTHKDVXLAEKAATSLLELQPQ 1138
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G++++LSNIYA A RWEDVA++R LM +KK PGW+ I VD H+F GD THP+
Sbjct: 1139 NPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPR 1198
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I++M + L + ++L GY+P+T+ VL D++E+ K LY HSEKLA+ FGL+ TP T
Sbjct: 1199 SKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPEHT 1258
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVC DCH KL+S I R I+VRD NRFH F+ G+CSCGDYW
Sbjct: 1259 PIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 1309
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 149/309 (48%), Positives = 212/309 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+ +Y + F+ ++ + +IDMY KCGC+E AR +F MEE+ V +WSAMI HGQ
Sbjct: 283 IDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQ 342
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL F M+ G+ P+ +T LL+AC H G V+EG RFF SM +Y + ++HY
Sbjct: 343 GRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYT 402
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL RAG L EA + I++M I+ + +WGA LG CR HK++ LAE+A+ L +L
Sbjct: 403 CVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQSQ 462
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G++V+LSNIYA A RWEDVA++R LM +KKTPGW+ I VD H+F GD THP+
Sbjct: 463 NPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSVGDTTHPR 522
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I++M + L + ++L GY+P+T+ VL D++E+ K LY HSEKLA+ FGL+ TP T
Sbjct: 523 SKEIYEMLKSLSNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPEHT 582
Query: 302 PIRIMKNLR 310
PIRI+KNLR
Sbjct: 583 PIRIIKNLR 591
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 87/173 (50%), Gaps = 12/173 (6%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G + VC L+DMYVKC +E AR +F +M+ER + TW+ MI G A G+
Sbjct: 182 IHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGK 241
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR---RFFYSMTTEYGIIPQIE 118
A E+L F KM E G+ P+ V + ++ AC +G + + R + + +I
Sbjct: 242 ANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGT- 300
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDL 167
M+D+ ++ G ++ A E M K N + W A++ H K +DL
Sbjct: 301 ---AMIDMYAKCGCVESAREIFDRMEEK-NVISWSAMIAAYGYHGQGRKALDL 349
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 8/171 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G + VC L+DMY KC +E AR +F +M ER + TW+ MI G A G
Sbjct: 858 IHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGN 917
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF-FYSMTTEYGIIPQIEHY 120
A E+L F+KM E G+ P+ V + ++ AC +G + + R Y ++ + +
Sbjct: 918 ANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQL--DVILG 975
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDL 167
M+D+ ++ G ++ A E M K N + W A++ H K +DL
Sbjct: 976 TAMIDMHAKCGCVESAREIFDRMEEK-NVISWSAMIAAYGYHGQGRKALDL 1025
>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
Length = 668
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 172/352 (48%), Positives = 247/352 (70%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H + G N+ V +++DMY KCG +E A + F +++ + + +WSAMI G +HG
Sbjct: 317 RIHNQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHG 376
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F M + G+KPN +TFI +L AC H G + EGR ++ +M TE+GI P +EHY
Sbjct: 377 YGQEALHVFTDMRKSGLKPNYITFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHY 436
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLL RAG L EAY I+ M +KP+ +WGALL CR++KN++LA+ + +L +LD
Sbjct: 437 GCMVDLLGRAGCLDEAYGLIKEMKVKPDAALWGALLSACRIYKNVELAKICAERLFELDA 496
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+GY+V+LSNIYAEA W++V R+R L++ G++K PG+SS+ + G H F GD++HP
Sbjct: 497 TNSGYYVLLSNIYAEAGMWKEVERMRVLVKTRGIEKPPGYSSVELKGKTHLFYVGDKSHP 556
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q ++I+ EKLL+ + GY+PNT VL D++ +E+E L HSEKLA+ F LMN+ G
Sbjct: 557 QYKEIYAYLEKLLERIHDAGYVPNTGSVLHDLDVEERESMLRIHSEKLAVAFALMNSVQG 616
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ I ++KNLRVC DCHAA K+I+++ REI++RD RFH F+ G CSCGDYW
Sbjct: 617 SVIHVIKNLRVCTDCHAAIKIITKLTGREIIIRDLKRFHHFKDGLCSCGDYW 668
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLE-GARRVFIEMEERTVFTWSAMIQGLAIHG 60
+H ++ G V NT+ID Y K G + GA R +M +R V +W+ MI A +G
Sbjct: 214 IHALVSKIGLDGQTGVANTIIDAYAKGGGHDLGAARKLFDMMDRDVVSWNTMIALYAQNG 273
Query: 61 QAKEALTSFNKMIEIG--IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+ EAL ++KM+ +G ++ N VT +L AC H G + G+R ++ G+ +
Sbjct: 274 LSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKR-IHNQVVRMGLEDNVY 332
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ S+ G ++ A++ + + K N + W A++ G +H
Sbjct: 333 VGTSVVDMYSKCGKVEMAWKAFQKIKGK-NILSWSAMIAGYGMH 375
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/352 (50%), Positives = 251/352 (71%), Gaps = 6/352 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+ +N S R +LIDMY KCG +E A +VF M +++ +W+AMI G A+HG
Sbjct: 346 RLKGVTNGSALR------TSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHG 399
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A A F++M + GI+P+ +T +GLL AC H G +D GR F S+T +Y I P++EHY
Sbjct: 400 RANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHY 459
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCM+DLL AG +EA E I MP++P+GV+W +LL C++H N++LAE +++L +++P
Sbjct: 460 GCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEP 519
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G +V+LSNIYA A RWEDVAR+R+++ G+KK PG SSI +D VVHEF+ GD+ HP
Sbjct: 520 ENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHP 579
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q+ +I++M E++ ++ G++P+TS VL ++EE+ KE L HSEKLA+ FGL++T PG
Sbjct: 580 QSREIYRMLEEMDVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPG 639
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T + ++KNLRVC +CH A KLIS+I REIV RDR RFH F+ G CSC DYW
Sbjct: 640 TKLTVVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 691
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 2/163 (1%)
Query: 7 NQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEAL 66
+ GF ++++ N I +Y KCG +E A +F + + V +W+ +I G KEAL
Sbjct: 243 DHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEAL 302
Query: 67 TSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY-GIIPQIEHYGCMVD 125
F +M+ G PN VT + +L AC H+G +D GR + G+ ++D
Sbjct: 303 LLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLID 362
Query: 126 LLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
+ ++ G ++ A++ +M + + W A++ G +H + A
Sbjct: 363 MYAKCGDIEAAHQVFNSM-MHKSLSSWNAMIFGFAMHGRANAA 404
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 4/160 (2%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+R++ C LI Y G + AR+VF + ER V +W+AMI G + +EAL F +
Sbjct: 146 QRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKE 205
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M+ ++P+ T + +L AC G ++ GR + +G ++ + L S+ G
Sbjct: 206 MMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCG 265
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
++ A + K + V W L+GG + +++L +EA
Sbjct: 266 DVEIASGLFEGLSCK-DVVSWNTLIGG---YTHMNLYKEA 301
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 4/138 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEG---ARRVFIEMEERTVFTWSAMIQGLAI 58
H ++G + L+++ V +G A VF +E + W+ M++GLA
Sbjct: 1 THAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLAS 60
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
L + +M+ G PN TF LL +C +EGR+ ++ + G
Sbjct: 61 SSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQ-IHAQVMKLGCELDRY 119
Query: 119 HYGCMVDLLSRAGFLQEA 136
+ ++ + +R G L++A
Sbjct: 120 AHTSLISMYARNGRLEDA 137
>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/352 (50%), Positives = 245/352 (69%), Gaps = 1/352 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ ++ V LID+Y KCG L A +F ++ + + TW+A+I IHG
Sbjct: 308 KIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHG 367
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A++ L F +M++ G+KP+ VTF+ LL AC H G+V+EG+ F M EYGI P ++HY
Sbjct: 368 HAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-EYGIKPSLKHY 426
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLL RAG+L+ AY+FI++MP++P+ +WGALLG CR+H NI+L + AS +L ++D
Sbjct: 427 GCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDS 486
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N GY+V+LSNIYA +WE V +VR L R G+KKTPGWS+I V+ V F G+++HP
Sbjct: 487 KNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHP 546
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ ++I++ L MK GYIP+ S VL D+EE EKE L HSE+LA+ FG+++TPP
Sbjct: 547 KCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPK 606
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+PIRI KNLRVC DCH A K IS I REIVVRD NRFH F+ G CSCGDYW
Sbjct: 607 SPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 658
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 119/274 (43%), Gaps = 48/274 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ + GF+ N+ V +LI MY + G AR +F +M R + +W+AMI GL +G
Sbjct: 136 KIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNG 195
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHAC----GHMGWVDEGRRFFYSMTTEYGIIP- 115
A +AL ++M GIK N VT + +L +G +D + F IIP
Sbjct: 196 NAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVF-------EIIPV 248
Query: 116 -QIEHYGCMVDLLSRAGFLQEAYEFIRNM----PIKPNGVVW----------GALLGGCR 160
+ + ++ ++ G EA E + M I PN W GAL G +
Sbjct: 249 KDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMK 308
Query: 161 VHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGW 220
+H + + + LD L ++Y + R D + + P
Sbjct: 309 IHGRV---IKTNLHLDVF------VATCLIDVYGKCGRLVDAMSL--------FYQVPQE 351
Query: 221 SSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLD 254
SS+T + + ++ H AEK +++ ++LD
Sbjct: 352 SSVTWNAI----ISCHGIHGHAEKTLKLFGEMLD 381
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 86/174 (49%), Gaps = 12/174 (6%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
+G ++I + L+++Y G + +R F ++ ++ V+ W++MI +G EA+
Sbjct: 45 AGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGC 104
Query: 69 FNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F +++ + I+P+ TF +L ACG + VD GR+ + + G + ++ +
Sbjct: 105 FYQLLLVSEIRPDFYTFPPVLKACGTL--VD-GRK-IHCWAFKLGFQWNVFVAASLIHMY 160
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
SR GF A +MP + G W A++ G + N A++ LD LD +
Sbjct: 161 SRFGFTGIARSLFDDMPFRDMG-SWNAMISGLIQNGN------AAQALDVLDEM 207
>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 891
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/352 (50%), Positives = 245/352 (69%), Gaps = 1/352 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ ++ V LID+Y KCG L A +F ++ + + TW+A+I IHG
Sbjct: 541 KIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHG 600
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A++ L F +M++ G+KP+ VTF+ LL AC H G+V+EG+ F M EYGI P ++HY
Sbjct: 601 HAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-EYGIKPSLKHY 659
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLL RAG+L+ AY+FI++MP++P+ +WGALLG CR+H NI+L + AS +L ++D
Sbjct: 660 GCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDS 719
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N GY+V+LSNIYA +WE V +VR L R G+KKTPGWS+I V+ V F G+++HP
Sbjct: 720 KNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHP 779
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ ++I++ L MK GYIP+ S VL D+EE EKE L HSE+LA+ FG+++TPP
Sbjct: 780 KCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPK 839
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+PIRI KNLRVC DCH A K IS I REIVVRD NRFH F+ G CSCGDYW
Sbjct: 840 SPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 124/280 (44%), Gaps = 33/280 (11%)
Query: 2 VHEYSNQSGF-RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
VH + + G+ ++ + N ++DMY K G L+ A +VF + + V +W+ +I G A +G
Sbjct: 439 VHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNG 498
Query: 61 QAKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
A EA+ + M E I PN T++ +L A H+G + +G + + + + +
Sbjct: 499 LASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMK-IHGRVIKTNLHLDVFV 557
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL-DQL 178
C++D+ + G L +A +P + + V W A++ +H + AE+ + + L
Sbjct: 558 ATCLIDVYGKCGRLVDAMSLFYQVP-QESSVTWNAIISCHGIHGH---AEKTLKLFGEML 613
Query: 179 DPLNNGYHVVLSNI--------YAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD---- 226
D HV ++ + E +W +LM+ G+K + VD
Sbjct: 614 DEGVKPDHVTFVSLLSACSHSGFVEEGKW-----CFRLMQEYGIKPSLKHYGCMVDLLGR 668
Query: 227 ----GVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYI 262
+ ++F+ P A +W LL ++ G I
Sbjct: 669 AGYLEMAYDFIKDMPLQPDAS----IWGALLGACRIHGNI 704
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 84/158 (53%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ + GF+ N+ V +LI MY + G AR +F +M R + +W+AMI GL +G
Sbjct: 236 KIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNG 295
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A +AL ++M GIK N VT + +L C +G + + ++G+ +
Sbjct: 296 NAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTA-MLIHLYVIKHGLEFDLFVS 354
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++++ ++ G L++A + + M I + V W +++
Sbjct: 355 NALINMYAKFGNLEDARKAFQQMFIT-DVVSWNSIIAA 391
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 86/174 (49%), Gaps = 12/174 (6%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
+G ++I + L+++Y G + +R F ++ ++ V+ W++MI +G EA+
Sbjct: 145 AGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGC 204
Query: 69 FNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F +++ + I+P+ TF +L ACG + VD GR+ + + G + ++ +
Sbjct: 205 FYQLLLVSEIRPDFYTFPPVLKACGTL--VD-GRK-IHCWAFKLGFQWNVFVAASLIHMY 260
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
SR GF A +MP + G W A++ G + N A++ LD LD +
Sbjct: 261 SRFGFTGIARSLFDDMPFRDMG-SWNAMISGLIQNGN------AAQALDVLDEM 307
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 4/170 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + G ++ V N LI+MY K G LE AR+ F +M V +W+++I +
Sbjct: 338 IHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDD 397
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A F KM G +P+ +T + L R + ++ +
Sbjct: 398 PVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGN 457
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
+VD+ ++ G L A++ +P+K + + W L+ G + LA EA
Sbjct: 458 AVVDMYAKLGLLDSAHKVFEIIPVK-DVISWNTLITG---YAQNGLASEA 503
>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 849
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/351 (50%), Positives = 240/351 (68%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ +N+ V L+DMY KCG + AR++F M+ER V TW+AMI G HG
Sbjct: 500 IHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGL 559
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K AL F KM + IKPN VTF+ +L AC H G V+EG ++F SM +YG+ P ++HYG
Sbjct: 560 GKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYG 619
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
MVDLL RA L EA++FI+ MPI+P V+GA+LG CR+HKN++L E+A+ ++ LDP
Sbjct: 620 AMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRIFDLDPD 679
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ GYHV+L+NIYA A W+ VARVR M G++KTPGWS + + VH F +G +HPQ
Sbjct: 680 DGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQ 739
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A+KI+ E L + +K GY+P+T+ V D+E+ KE+ L HSEKLA+ F L+NT PGT
Sbjct: 740 AKKIYAFLETLGNRIKAAGYMPDTNSV-HDVEDVVKEQLLNSHSEKLAIAFSLLNTSPGT 798
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I + KNLRVC DCH A K IS + REI+VRD RFH F+ G+CSCGDYW
Sbjct: 799 TIHLRKNLRVCGDCHNATKYISLVTKREIIVRDMRRFHHFKDGTCSCGDYW 849
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 122/267 (45%), Gaps = 14/267 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H YS ++GF + V L+DMY KCG + AR +F M +TV +W++MI G +G
Sbjct: 298 IHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGD 357
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+ F KM++ ++ VT +G LHAC +G V++G RF + + + + +
Sbjct: 358 PGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQG-RFVHKLLDQLELGSDVSVMN 416
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
++ + S+ + A E N+ K V W A++ G + I+ A + ++ QL +
Sbjct: 417 SLISMYSKCKRVDIAAEIFENLQHK-TLVSWNAMILGYAQNGRINEAIDYFCKM-QLQNI 474
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++S I A AE V K + L ++ + +V + H
Sbjct: 475 KPDSFTMVSVIPALAEL--SVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVH-T 531
Query: 242 AEKIFQM--------WEKLLDGMKLKG 260
A K+F M W ++DG G
Sbjct: 532 ARKLFDMMDERHVTTWNAMIDGYGTHG 558
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
+GF N+ +++MY KC +E A ++F M ER + W+ +I G A +G K AL
Sbjct: 204 NGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALEL 263
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLL 127
+M E G +P+ +T + +L A +G + GR YSM + + +VD+
Sbjct: 264 VLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVS--TALVDMY 321
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
S+ G + A M K V W +++ G
Sbjct: 322 SKCGSVGTARLIFDRMTGK-TVVSWNSMIDG 351
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 2/138 (1%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
L+ ++ K G L A RVF +E++ + M++G A + +A++ F +M G++P
Sbjct: 115 LVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPV 174
Query: 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFI 140
F LL CG + +G+ + G + +V++ ++ ++EAY+
Sbjct: 175 VYNFTYLLKVCGDNADLRKGKEIHCQLIVN-GFASNVFAMTGVVNMYAKCRLVEEAYKMF 233
Query: 141 RNMPIKPNGVVWGALLGG 158
MP + + V W ++ G
Sbjct: 234 DRMPER-DLVCWNTIISG 250
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/351 (50%), Positives = 236/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + GF + V N L+ Y KCG A VF +M +R V +W+A+I G A HG+
Sbjct: 552 IHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGR 611
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL F +M G+KP+ VTF+ LL AC H G ++EGRR+F SM+ ++ IIP IEHYG
Sbjct: 612 GQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYG 671
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L EA I+ MP + N +WGALLG CR+H N+ +AE A+ +LD
Sbjct: 672 CMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLD 731
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N +V LS++YA A W+ A++RKLM GV K PG S I V +H FVA D +HPQ
Sbjct: 732 NAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDRSHPQ 791
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+EKI+ ++L MK+KGY+P+T V+ D++E EKE + HSE+LA+ +GL++TPPGT
Sbjct: 792 SEKIYAELDRLTHAMKMKGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTPPGT 851
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I I KNLRVC DCH A K IS+IV+REI+ RD NRFH F+ G CSCGDYW
Sbjct: 852 RIHIFKNLRVCPDCHTATKFISKIVDREIIARDVNRFHHFKDGVCSCGDYW 902
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 99/177 (55%), Gaps = 5/177 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++GF +I V N LI MY +CG ++ AR VF +M + V +W+AMI GLA G
Sbjct: 350 IHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGF 409
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EALT + +M + G++PN VT+ +L+AC ++ GRR + E G+
Sbjct: 410 GAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRR-IHQQVVEAGLATDAHVGN 468
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+V++ S G +++A + M I+ + V + A++GG H +L +EA + D+L
Sbjct: 469 TLVNMYSMCGSVKDARQVFDRM-IQRDIVAYNAMIGGYAAH---NLGKEALKLFDRL 521
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 88/162 (54%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H+ ++G + V NTL++MY CG ++ AR+VF M +R + ++AMI G A H
Sbjct: 450 RIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHN 509
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
KEAL F+++ E G+KP+ VT+I +L+AC + G ++ R +++ + G
Sbjct: 510 LGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWARE-IHTLVRKGGFFSDTSVG 568
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+V ++ G +A M K N + W A++GG H
Sbjct: 569 NALVSTYAKCGSFSDASIVFEKMT-KRNVISWNAIIGGSAQH 609
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 88/160 (55%), Gaps = 4/160 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME--ERTVFTWSAMIQGLAI 58
+VH++ Q + N LI+MY++CG +E AR+V+ ++ ERTV +W+AM+ G
Sbjct: 44 QVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQ 103
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+G ++AL +M + G+ P+ T + L +C G ++ GR + + G++ ++
Sbjct: 104 YGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQ-AMQAGLLFDVK 162
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
C++++ ++ G ++EA E M K + V W +GG
Sbjct: 163 VANCILNMYAKCGSIEEAREVFDKME-KKSVVSWTITIGG 201
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH +G + V L+ MY KCG + R+VF ++ R + W+ MI GLA G
Sbjct: 249 VHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGY 308
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA +N+M G+ PN +T++ LL+AC + + G+ +S + G I
Sbjct: 309 WEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKE-IHSRVAKAGFTSDIGVQN 367
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + SR G +++A + + ++ + + W A++GG
Sbjct: 368 ALISMYSRCGSIKDA-RLVFDKMVRKDVISWTAMIGG 403
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 83/157 (52%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + Q+G +++V N +++MY KCG +E AR VF +ME+++V +W+ I G A G+
Sbjct: 148 IHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGR 207
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++ A F KM + G+ PN +T+I +L+A + G+ +S G
Sbjct: 208 SETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKA-VHSRILNAGHESDTAVGT 266
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V + ++ G ++ + + + + + W ++GG
Sbjct: 267 ALVKMYAKCGSYKDCRQVFEKL-VNRDLIAWNTMIGG 302
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/354 (51%), Positives = 246/354 (69%), Gaps = 3/354 (0%)
Query: 2 VHEYSNQSGF--RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
V + + QSGF N+ V + LIDMY KCG +E A +VF MEER V+++S+MI G A+H
Sbjct: 294 VRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMH 353
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G A A+ F++M++ IKPN VTFIG+L AC H G V++G++ F M +G+ P +H
Sbjct: 354 GLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDH 413
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CMVDLL RAG L+EA ++ MP+ P+G VWGALLG CR+H N D+A+ A+ L +L+
Sbjct: 414 YACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFELE 473
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSIT-VDGVVHEFVAGDET 238
P G +++LSNIYA A RW+DV++VRKLMR G+KK PG S + G++HEF AGD +
Sbjct: 474 PNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGIIHEFFAGDMS 533
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
HP++ +I Q E LLD +K GY PN S V DI ++EK++ L HSEKLAL FGL+ T
Sbjct: 534 HPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEKKRLLMSHSEKLALAFGLLTTN 593
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G IRI+KNLR+CEDCH+ S+I REIVVRD RFH F+ G CSCG++W
Sbjct: 594 AGCTIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRFHHFRDGRCSCGNFW 647
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 46/206 (22%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWS------------------- 50
GF ++ V NTLIDMYVKCGCL RVF EM +R V +W+
Sbjct: 170 GFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELF 229
Query: 51 ------------AMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMG--- 95
AM+ G A + + +EAL F +M G+K + VT +G++ AC +G
Sbjct: 230 DGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAK 289
Query: 96 ---WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVW 152
WV + + + +G + ++D+ ++ G +++AY+ M + N +
Sbjct: 290 YANWVRD-----VAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEER-NVYSY 343
Query: 153 GALLGGCRVHKNIDLAEEASRQLDQL 178
+++ G +H LA A D++
Sbjct: 344 SSMIVGFAMH---GLAGAAMELFDEM 366
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 82/195 (42%), Gaps = 8/195 (4%)
Query: 35 RRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM 94
R VF ++E F W+A+I+G A+ G E++ +N M GI P TF LL AC
Sbjct: 93 RLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAA 152
Query: 95 GWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGA 154
V+ GR+ G + ++D+ + G L + M + + + W +
Sbjct: 153 LDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEM-LDRDVISWTS 211
Query: 155 LLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGV 214
L+ + + E AS D L + + YA+ R + V + M+ GV
Sbjct: 212 LI---VAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGV 268
Query: 215 KKTPGWSSITVDGVV 229
K +T+ GV+
Sbjct: 269 KT----DEVTLVGVI 279
>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
Length = 906
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/352 (50%), Positives = 239/352 (67%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + GF +I N+L++MY KCG ++ A R F E+ ER + +WSAMI GLA HG
Sbjct: 555 QLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHG 614
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++AL FN+M++ G+ PN +T + +L AC H G V E + +F SM +G P EHY
Sbjct: 615 HGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHY 674
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DLL RAG + EA E + MP + N VWGALLG R+HK+++L A+ L L+P
Sbjct: 675 ACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEP 734
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+G HV+L+NIYA A +WE+VA VR+LMR+ VKK PG S I V V+ F+ GD +H
Sbjct: 735 EKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHY 794
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++++I+ ++L D M GY+P + L D+E+ EKE LY HSEKLA+ FGL+ TP G
Sbjct: 795 RSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQG 854
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLRVC DCH AFK I +IV+REI+VRD NRFH F+ GSCSCGDYW
Sbjct: 855 APIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 906
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH S +SGF +I V N+LID Y KC +E A R+F E + ++++MI A +G
Sbjct: 454 QVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYG 513
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q +EAL F +M ++ +KP+ LL+AC ++ ++G++ + +YG + I
Sbjct: 514 QGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQ-LHVHILKYGFVLDIFAG 572
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV-WGALLGGCRVH 162
+V++ ++ G + +A + G+V W A++GG H
Sbjct: 573 NSLVNMYAKCGSIDDAGRAFSEL--TERGIVSWSAMIGGLAQH 613
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 112/233 (48%), Gaps = 16/233 (6%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH SGF ++ V NTL+ MY KC ++R+F E+ ER V +W+A+
Sbjct: 178 QVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXD 237
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR-RFFYSMTTEYGIIPQIEH 119
EA+ F +M+ GIKPN + +++AC G D R + + + G
Sbjct: 238 FCGEAVGLFYEMVLSGIKPNEFSLSSMVNAC--TGLRDSSRGKIIHGYLIKLGYDWDPFS 295
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKN----IDLAEEASRQL 175
+VD+ ++ G L +A + +P+ V W A++ GC +H++ ++L + RQL
Sbjct: 296 ANALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQL 354
Query: 176 D----QLDPLNNGY-HVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSI 223
++D ++ + V L ++Y++ + ED R L K W++I
Sbjct: 355 HSSLMKMDMESDLFVSVGLVDMYSKCDLLED---ARMAFNLLPEKDLIAWNAI 404
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + +SG + + N LI++Y KC AR++ E E + +WSA+I G A +G
Sbjct: 77 QIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNG 136
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACG 92
AL +F++M +G+K N TF +L AC
Sbjct: 137 LGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 122/303 (40%), Gaps = 60/303 (19%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++ V L+DMY KC LE AR F + E+ + W+A+I G + +
Sbjct: 353 QLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYW 412
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLL---------HACGHMGWVDEGRRFFY------ 105
+ EAL+ F +M + GI N T +L H C + + F
Sbjct: 413 EDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVN 472
Query: 106 SMTTEYGIIPQIE---------------HYGCMVDLLSRAGFLQEAYEF---IRNMPIKP 147
S+ YG +E + M+ ++ G +EA + +++M +KP
Sbjct: 473 SLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKP 532
Query: 148 NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV------VLSNIYAEAERWED 201
+ V +LL C N+ A E +QL + L G+ + L N+YA+ +D
Sbjct: 533 DRFVCSSLLNAC---ANLS-AFEQGKQL-HVHILKYGFVLDIFAGNSLVNMYAKCGSIDD 587
Query: 202 VARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGY 261
R + G+ WS++ + G H + Q++ ++L +G
Sbjct: 588 AGRAFSELTERGI---VSWSAM---------IGGLAQHGHGRQALQLFNQMLK----EGV 631
Query: 262 IPN 264
PN
Sbjct: 632 SPN 634
>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/351 (50%), Positives = 243/351 (69%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y +++G + V N LIDMY KCG L AR VF +M+ R V +W++MI AIHG
Sbjct: 102 IHMYVDKNGLGGALPVNNALIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGD 161
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A AL F +M + IKPNGVTF+G+L+AC H G V+EGRR F SMT E+ I P+ EHYG
Sbjct: 162 ASNALKFFYQMKDENIKPNGVTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYG 221
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL RA L++A E + MP+ PN V+WG+L+ C++H +L E A++Q+ +L+P
Sbjct: 222 CMVDLFGRANLLRDALELVETMPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLELEPD 281
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G V LSNIYA+ RW+DV +R LM+ G+ K G S I ++ V+EFV D+ H Q
Sbjct: 282 HDGALVQLSNIYAKDRRWQDVGELRNLMKQRGISKERGCSRIELNNQVYEFVMADKKHKQ 341
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A+KI++ ++++ +KL GY PNT VL+D+EE+ K++ + HSEKLAL +GLM G+
Sbjct: 342 ADKIYEKLDEVVKELKLVGYTPNTRSVLVDVEEEGKKEVVLWHSEKLALCYGLMGEGKGS 401
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVCEDCH KL+S++ EI+VRDR RFH ++AG CSC DYW
Sbjct: 402 CIRIVKNLRVCEDCHTFIKLVSKVYGMEIIVRDRTRFHHYKAGVCSCNDYW 452
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ V +I Y + G +E AR +F +MEE+ + WSAMI G A + +EAL F++M
Sbjct: 12 RNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEM 71
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
GIKP+ VT + ++ AC +G +D ++ + + G+ + ++D+ ++ G
Sbjct: 72 QVFGIKPDQVTILSVISACARLGVLDRA-KWIHMYVDKNGLGGALPVNNALIDMYAKCGN 130
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVV 188
L A M + N + W +++ +H + A + Q+ + NG V
Sbjct: 131 LGAARGVFEKMQSR-NVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFV 185
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/352 (50%), Positives = 243/352 (69%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + G + N + +LIDMY KCG LE A VF +E R VF WSAMI GLA+HG
Sbjct: 387 IHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGH 446
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ A+ F+KM E +KPN VTF LL AC H G VDEGR FF M YG++P +HY
Sbjct: 447 GRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYA 506
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+L RAG L+EA E I MPI P+ VWGALLG CR++ N++LAE A +L + D
Sbjct: 507 CMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETDSN 566
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +V+LSNIYA+A +W+ V+R+R+ M+ G++K PG SSI V+G++HEF+ GD +HP
Sbjct: 567 NHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGDNSHPL 626
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKE-KEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ ++++ +K GY+ + S +L +EE+ KE L HSEKLA+ +GL+ P
Sbjct: 627 STEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEHALNLHSEKLAIAYGLIRMEPS 686
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVC DCH+ KLIS++ NR+I++RDR RFH F G+CSC DYW
Sbjct: 687 QPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFHHFSGGNCSCMDYW 738
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 34/191 (17%)
Query: 4 EYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAI----- 58
+Y ++G N+ + N ++DMYVKCG LE ARR+F +MEE+ + +W+ MI G A
Sbjct: 256 DYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYD 315
Query: 59 --------------------------HGQAKEALTSFNKM-IEIGIKPNGVTFIGLLHAC 91
+G+ KEAL F ++ + KPN VT L AC
Sbjct: 316 AARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAAC 375
Query: 92 GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV 151
+G +D G + + + GI ++D+ S+ G L++A E ++ + + V
Sbjct: 376 AQLGAMDLG-GWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVE-RRDVFV 433
Query: 152 WGALLGGCRVH 162
W A++ G +H
Sbjct: 434 WSAMIAGLAMH 444
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 101/216 (46%), Gaps = 8/216 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ F ++ + N+LI Y G L+ A VF ++ E+ + +W++MI G G
Sbjct: 153 IHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGS 212
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL F +M +PN VT +G+L AC ++ G R+ GI +
Sbjct: 213 PEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFG-RWACDYIERNGIDINLILSN 271
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
M+D+ + G L++A M K + V W ++ G + D A+R++ + P
Sbjct: 272 AMLDMYVKCGSLEDARRLFDKMEEK-DIVSWTTMIDGYAKVGDYD----AARRVFDVMPR 326
Query: 182 NN--GYHVVLSNIYAEAERWEDVARVRKLMRNLGVK 215
+ ++ ++S+ + E +A R+L N K
Sbjct: 327 EDITAWNALISSYQQNGKPKEALAIFRELQLNKNTK 362
>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
Length = 891
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/352 (51%), Positives = 244/352 (69%), Gaps = 1/352 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H ++ ++ V LID+Y KCG L A +F ++ + + TW+A+I IHG
Sbjct: 541 RIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHG 600
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A++ L F +M++ G+KP+ VTF+ LL AC H G+V+EG+ F M EYGI P ++HY
Sbjct: 601 HAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-EYGIKPSLKHY 659
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLL RAG+L+ AY FI++MP++P+ +WGALLG CR+H NI+L + AS +L ++D
Sbjct: 660 GCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDS 719
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N GY+V+LSNIYA +WE V +VR L R G+KKTPGWS+I V+ V F G+++HP
Sbjct: 720 KNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHP 779
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ ++I++ L MK GYIP+ S VL D+EE EKE L HSE+LA+ FG+++TPP
Sbjct: 780 KCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPK 839
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+PIRI KNLRVC DCH A K IS I REIVVRD NRFH F+ G CSCGDYW
Sbjct: 840 SPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 84/158 (53%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H ++ + GF+ N+ V +LI MY + G AR +F +M R + +W+AMI GL +G
Sbjct: 236 RIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNG 295
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A +AL ++M GIK N VT + +L C +G + + ++G+ +
Sbjct: 296 NAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTA-MLIHLYVIKHGLEFDLFVS 354
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++++ ++ G L++A + + M I + V W +++
Sbjct: 355 NALINMYAKFGNLEDARKAFQQMFIT-DVVSWNSIIAA 391
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 87/174 (50%), Gaps = 12/174 (6%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
+G ++I + L+++Y G + +R F ++ ++ V+TW++MI +G EA+
Sbjct: 145 AGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGC 204
Query: 69 FNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F +++ + I+P+ TF +L ACG + VD GRR + + G + ++ +
Sbjct: 205 FYQLLLVSEIRPDFYTFPPVLKACGTL--VD-GRR-IHCWAFKLGFQWNVFVAASLIHMY 260
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
SR GF A +MP + G W A++ G + N A++ LD LD +
Sbjct: 261 SRFGFTGIARSLFDDMPFRDMG-SWNAMISGLIQNGN------AAQALDVLDEM 307
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/282 (20%), Positives = 112/282 (39%), Gaps = 34/282 (12%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + G ++ V N LI+MY K G LE AR+ F +M V +W+++I +
Sbjct: 338 IHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDD 397
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A F KM G +P+ +T + L R + ++ +
Sbjct: 398 PVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGN 457
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+VD+ ++ G L A++ + +K + + W L+ G + A E + +++ +
Sbjct: 458 AVVDMYAKLGLLDSAHKVFEIILVK-DVISWNTLITGYAQNGLASEAIEVYKMMEECKEI 516
Query: 182 --NNGYHVVLSNIYAEAERWEDVARV--RKLMRNLGVK---------------------- 215
N G V + YA + R+ R + NL +
Sbjct: 517 IPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMS 576
Query: 216 ---KTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLD 254
+ P SS+T + + ++ H AEK +++ ++LD
Sbjct: 577 LFYQVPQESSVTWNAI----ISCHGIHGHAEKTLKLFGEMLD 614
>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 933
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/352 (50%), Positives = 239/352 (67%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + GF +I N+L++MY KCG ++ A R F E+ ER + +WSAMI GLA HG
Sbjct: 582 QLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHG 641
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++AL FN+M++ G+ PN +T + +L AC H G V E + +F SM +G P EHY
Sbjct: 642 HGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHY 701
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DLL RAG + EA E + MP + N VWGALLG R+HK+++L A+ L L+P
Sbjct: 702 ACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEP 761
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+G HV+L+NIYA A +WE+VA VR+LMR+ VKK PG S I V V+ F+ GD +H
Sbjct: 762 EKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHY 821
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++++I+ ++L D M GY+P + L D+E+ EKE LY HSEKLA+ FGL+ TP G
Sbjct: 822 RSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQG 881
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLRVC DCH AFK I +IV+REI+VRD NRFH F+ GSCSCGDYW
Sbjct: 882 APIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 933
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH S +SGF +I V N+LID Y KC +E A R+F E + ++++MI A +G
Sbjct: 481 QVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYG 540
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q +EAL F +M ++ +KP+ LL+AC ++ ++G++ + +YG + I
Sbjct: 541 QGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQ-LHVHILKYGFVLDIFAG 599
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV-WGALLGGCRVH 162
+V++ ++ G + +A + G+V W A++GG H
Sbjct: 600 NSLVNMYAKCGSIDDAGRAFSEL--TERGIVSWSAMIGGLAQH 640
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 4/176 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH SGF ++ V NTL+ MY KC ++R+F E+ ER V +W+A+
Sbjct: 178 QVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQID 237
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR-RFFYSMTTEYGIIPQIEH 119
EA+ F +M+ GIKPN + +++AC G D R + + + G
Sbjct: 238 FCGEAVGLFYEMVLSGIKPNEFSLSSMVNAC--TGLRDSSRGKIIHGYLIKLGYDWDPFS 295
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
+VD+ ++ G L +A + +P+ V W A++ GC +H++ + A E Q+
Sbjct: 296 ANALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLHEHHEQALELLGQM 350
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 8/160 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + G+ + N L+DMY K G L A VF ++++ + +W+A+I G +H
Sbjct: 280 IHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEH 339
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYS---MTTEYGIIPQIE 118
++AL +M GI PN T L AC MG + GR+ S M E + +
Sbjct: 340 HEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVG 399
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ S+ L++A +P K + + W A++ G
Sbjct: 400 ----LVDMYSKCDLLEDARMAFNLLPEK-DLIAWNAIISG 434
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 5/171 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + +SG + + N LI++Y KC AR++ E E + +WSA+I G A +G
Sbjct: 77 QIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNG 136
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
AL +F++M +G+K N TF +L AC + + G++ + + G +
Sbjct: 137 LGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQ-VHGVVVVSGFEGDVFVA 195
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
+V + ++ ++ +P + N V W AL C V ID EA
Sbjct: 196 NTLVVMYAKCDEFLDSKRLFDEIP-ERNVVSWNALF-SCYV--QIDFCGEA 242
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 122/303 (40%), Gaps = 60/303 (19%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++ V L+DMY KC LE AR F + E+ + W+A+I G + +
Sbjct: 380 QLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYW 439
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLL---------HACGHMGWVDEGRRFFY------ 105
+ EAL+ F +M + GI N T +L H C + + F
Sbjct: 440 EDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVN 499
Query: 106 SMTTEYGIIPQIE---------------HYGCMVDLLSRAGFLQEAYEF---IRNMPIKP 147
S+ YG +E + M+ ++ G +EA + +++M +KP
Sbjct: 500 SLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKP 559
Query: 148 NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV------VLSNIYAEAERWED 201
+ V +LL C N+ A E +QL + L G+ + L N+YA+ +D
Sbjct: 560 DRFVCSSLLNAC---ANLS-AFEQGKQL-HVHILKYGFVLDIFAGNSLVNMYAKCGSIDD 614
Query: 202 VARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGY 261
R + G+ WS++ + G H + Q++ ++L +G
Sbjct: 615 AGRAFSELTERGI---VSWSAM---------IGGLAQHGHGRQALQLFNQMLK----EGV 658
Query: 262 IPN 264
PN
Sbjct: 659 SPN 661
>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 858
Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust.
Identities = 171/352 (48%), Positives = 243/352 (69%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ + GF +I N+L++MY KCG +E A R F E+ R + +WSAMI G A HG
Sbjct: 507 QLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHG 566
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
KEAL FN+M+ G+ PN +T + +L AC H G V+EG+++F M +GI P EHY
Sbjct: 567 HGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHY 626
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DLL R+G L EA E + ++P + +G VWGALLG R+HKNI+L ++A++ L L+P
Sbjct: 627 ACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEP 686
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+G HV+L+NIYA A WE+VA+VRK M++ VKK PG S I + V+ F+ GD +H
Sbjct: 687 EKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHS 746
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++++I+ ++L D + GY + + ++++ EKEK LY HSEKLA+ FGL+ TPPG
Sbjct: 747 RSDEIYAKLDQLGDLLSKAGYSSIVEIDIHNVDKSEKEKLLYHHSEKLAVAFGLIATPPG 806
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLR+C DCH FK + +IV+REI+VRD NRFH F+ GSCSCGDYW
Sbjct: 807 GPIRVKKNLRICVDCHTFFKFVCKIVSREIIVRDINRFHHFKDGSCSCGDYW 858
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 89/168 (52%), Gaps = 2/168 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + +GF + V NTL+ MY KCG L+ +RR+F + ER V +W+A+
Sbjct: 103 KVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSE 162
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA+ F +M+ GI PN + +L+AC + D GR+ + + + G+
Sbjct: 163 LCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRK-IHGLMLKMGLDLDQFSA 221
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
+VD+ S+AG ++ A +++ P+ V W A++ GC +H DLA
Sbjct: 222 NALVDMYSKAGEIEGAVAVFQDIA-HPDVVSWNAIIAGCVLHDCNDLA 268
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 95/179 (53%), Gaps = 7/179 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S +SG + V N+L+D Y KC ++ A ++F E + +++MI + +G
Sbjct: 406 QIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYG 465
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL + +M + IKP+ LL+AC ++ ++G++ + ++G + I
Sbjct: 466 DGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQ-LHVHAIKFGFMCDIFAS 524
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV-WGALLGGCRVHKNIDLAEEASRQLDQL 178
+V++ ++ G +++A +P + G+V W A++GG H + +EA R +Q+
Sbjct: 525 NSLVNMYAKCGSIEDADRAFSEIPNR--GIVSWSAMIGGYAQHGH---GKEALRLFNQM 578
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 112/257 (43%), Gaps = 12/257 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G + N L+DMY K G +EGA VF ++ V +W+A+I G +H
Sbjct: 204 KIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHD 263
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
AL ++M G +PN T L AC MG+ + GR+ S+
Sbjct: 264 CNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAV 323
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG-CRVHKNIDLAEEASRQLDQLD 179
G +VD+ S+ + +A +MP K + + W AL+ G + ++D S+ +
Sbjct: 324 G-LVDMYSKCEMMDDARRAYDSMP-KKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDI 381
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
N LS + + + +V K + + +K ++ ++ + G H
Sbjct: 382 DFN---QTTLSTVLKSVASLQAI-KVCKQIHTISIKSGIYSDFYVINSLLDTY--GKCNH 435
Query: 240 -PQAEKIFQ--MWEKLL 253
+A KIF+ WE L+
Sbjct: 436 IDEASKIFEERTWEDLV 452
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 3/164 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + GF R+ + N L+ +Y KC AR++ E E V +WS+++ G +G
Sbjct: 3 LHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGF 62
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL FN+M +G+K N TF +L AC ++ GR+ + M G
Sbjct: 63 VEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRK-VHGMAVVTGFESDGFVAN 121
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNI 165
+V + ++ G L ++ + ++ N V W AL C V +
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGI-VERNVVSWNALF-SCYVQSEL 163
>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 908
Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/351 (50%), Positives = 240/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++ +G ++RV N L+ MY KCG ++ ARRVF +M ER V++W+ MI GLA HG+
Sbjct: 558 VHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGR 617
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+AL F KM G KPNG +F+ +L AC H G VDEGRR F S+T +YGI P +EHY
Sbjct: 618 GLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYT 677
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L+EA FI NMPI+P WGALLG C + N+++AE A+++ +L P
Sbjct: 678 CMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPK 737
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ +V+LSNIYA WE VR +M+ G++K PG S I VD +H FV GD +HP+
Sbjct: 738 SASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIHSFVVGDTSHPE 797
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I+ + L+ +K +GY+P+T +VL + +++ KE+ L HSEKLA+ +GLM+TP
Sbjct: 798 SKEIYAKLKDLIKRLKAEGYVPDTRLVLRNTDQEYKEQALCSHSEKLAIVYGLMHTPYRN 857
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLRVC DCH A K IS++ REIV RD RFH F+ G CSCGDYW
Sbjct: 858 PIRVYKNLRVCSDCHTATKFISKVTGREIVARDAKRFHHFKDGVCSCGDYW 908
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 8/165 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+++ ++GF ++RV N LI MY KCG ++ AR VF M +R V +W+AMI GLA +G
Sbjct: 256 VHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGC 315
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLH---ACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
EA T F KM + G P+ T++ LL+ + G WV E + E G++ +
Sbjct: 316 GHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKE----VHKHAVEVGLVSDLR 371
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHK 163
V + R G + +A + ++ N W A++GG K
Sbjct: 372 VGSAFVHMYIRCGSIDDAQLIFDKLAVR-NVTTWNAMIGGVAQQK 415
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 91/181 (50%), Gaps = 18/181 (9%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y+ +G ++RV N L+ MY KCG A++VF +M ER V TW+ MI GLA HG
Sbjct: 458 VHSYAIDAGLV-DLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGC 516
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMG---WVDEGRRFFYSMTTEYGIIPQIE 118
EA + F +M+ GI P+ T++ +L AC G WV E +S G++ +
Sbjct: 517 GHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKE----VHSHAVNAGLVSDLR 572
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+V + ++ G + +A +M ++ + W ++GG H R LD L
Sbjct: 573 VGNALVHMYAKCGSVDDARRVFDDM-LERDVYSWTVMIGGLAQH---------GRGLDAL 622
Query: 179 D 179
D
Sbjct: 623 D 623
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 8/165 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + QSGF+ ++RV L++MYVKCG ++ A+ +F +M ER V +W+ MI GLA +G
Sbjct: 51 KIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYG 110
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHA---CGHMGWVDEGRRFFYSMTTEYGIIPQI 117
+ +EA F +M G PN T++ +L+A G + WV E +S G+ +
Sbjct: 111 RGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKE----VHSHAVNAGLALDL 166
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+V + +++G + +A M ++ + W ++GG H
Sbjct: 167 RVGNALVHMYAKSGSIDDARVVFDGM-VERDIFSWTVMIGGLAQH 210
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 10/162 (6%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++ +G ++RV N L+ MY K G ++ AR VF M ER +F+W+ MI GLA HG+
Sbjct: 153 VHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGR 212
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHA-----CGHMGWVDEGRRFFYSMTTEYGIIPQ 116
+EA + F +M G PN T++ +L+A G + WV E + + G I
Sbjct: 213 GQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKE----VHKHAGKAGFISD 268
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ ++ + ++ G + +A M + + + W A++GG
Sbjct: 269 LRVGNALIHMYAKCGSIDDARLVFDGMCDR-DVISWNAMIGG 309
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 85/164 (51%), Gaps = 9/164 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+++ + G ++RV + + MY++CG ++ A+ +F ++ R V TW+AMI G+A
Sbjct: 357 VHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKC 416
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHA-CGH--MGWVDEGRRFFYSMTTEYGIIPQIE 118
+EAL+ F +M G P+ TF+ +L A G + WV E +S + G++ +
Sbjct: 417 GREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKE----VHSYAIDAGLV-DLR 471
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+V + ++ G A + +M ++ N W ++ G H
Sbjct: 472 VGNALVHMYAKCGNTMYAKQVFDDM-VERNVTTWTVMISGLAQH 514
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 77/164 (46%), Gaps = 3/164 (1%)
Query: 52 MIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY 111
MI G A +G A++A+ +++M G +PN +T++ +L AC + G++ ++ +
Sbjct: 1 MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKK-IHAHIIQS 59
Query: 112 GIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
G + +V++ + G + +A + I + ++ N + W ++GG + A
Sbjct: 60 GFQSDVRVETALVNMYVKCGSIDDA-QLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHR 118
Query: 172 SRQLDQLDPLNNGY-HVVLSNIYAEAERWEDVARVRKLMRNLGV 214
Q+ + + N Y +V + N A A E V V N G+
Sbjct: 119 FLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGL 162
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/351 (49%), Positives = 239/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V Y ++ G + + V N LIDMY KCG +E A VF M R FTW+A+I GLA++G
Sbjct: 277 VRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGY 336
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA+ F++MI + P+ VTFIG+L AC H G VD+GR FF SM Y I P + HYG
Sbjct: 337 EEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYG 396
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C++DLL RAG + EA + I MP+ PN +WG LL CRVH N ++ E + +L +LDP
Sbjct: 397 CIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELDPE 456
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+ +++LSNIYA+ RWEDV R+R + G+KK PG S I +DG++HEFVAGD++HP
Sbjct: 457 NSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHEFVAGDQSHPM 516
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I+ E ++ + GY P+ + V +++ EKEK+K LY HSEKLA+ F L+++ P T
Sbjct: 517 SKEIYSKLESIISDLNNVGYFPDVTEVFVEVAEKEKKKVLYWHSEKLAIAFALLSSKPNT 576
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLR+C DCH A KLIS + RE+VVRDR RFH F+ G CSC DYW
Sbjct: 577 VIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 627
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 82/193 (42%), Gaps = 33/193 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKC-------------------------------G 29
+VH SG ++RV N L+DMY +C G
Sbjct: 144 QVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLG 203
Query: 30 CLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH 89
++ AR +F M ER +W+AMI G + +EAL F +M + + T + ++
Sbjct: 204 QVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVIT 263
Query: 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNG 149
AC +G ++ G M+ + GI ++D+ S+ G ++ A + + M + +
Sbjct: 264 ACAQLGALEMGEWVRVYMSRQ-GIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHR-DK 321
Query: 150 VVWGALLGGCRVH 162
W A++ G V+
Sbjct: 322 FTWTAIILGLAVN 334
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 15/187 (8%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + G RN V ++L+ Y G AR + E + T W+A+I G G+
Sbjct: 45 VHAHVVRLGMGRNAHVASSLVAAYTAGGDGAAARALVGECD--TPVAWNALISGHNRGGR 102
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGH------MGWVDEGRRFFYSMTTEYGIIP 115
E+ SF M G P VT++ +L ACG +G GR G++P
Sbjct: 103 FGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGR------VVGSGVLP 156
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
+ +VD+ + + A++ M ++ + V W +LL G +D A + ++
Sbjct: 157 DLRVENALVDMYAECADMGSAWKVFDGMQVR-SVVSWTSLLSGLARLGQVDEARDLFDRM 215
Query: 176 DQLDPLN 182
+ D ++
Sbjct: 216 PERDTVS 222
>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 678
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/346 (50%), Positives = 239/346 (69%)
Query: 7 NQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEAL 66
N F N + +LID Y KCG +E A V+ M+E+ ++A+I GLA++GQ A
Sbjct: 333 NYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAF 392
Query: 67 TSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126
F +M + GI PN TF+GLL C H G VD+GR +F SM+ ++ + P IEHYGCMVDL
Sbjct: 393 GVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDL 452
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYH 186
L+RAGFL EA+ I+ MP+K N +VWG+LLGGCR+H+ LAE +QL +L+P N+G++
Sbjct: 453 LARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLAEHVLKQLIELEPWNSGHY 512
Query: 187 VVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIF 246
V+LSNIY+ + RW++ ++R + G++K PG+S + VDGVVHEF+ GD +HP ++KI+
Sbjct: 513 VLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVDGVVHEFLVGDTSHPLSQKIY 572
Query: 247 QMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIM 306
+ E L +K GY P T VL D+EE+EKE FL HSEKLA+ F L++T IR++
Sbjct: 573 EKLESLFKDLKEAGYNPTTEFVLFDVEEEEKEHFLGCHSEKLAVAFALISTGAKYVIRVV 632
Query: 307 KNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
KNLRVC DCH A K IS++ REIV+RD NRFHCF G+CSC DYW
Sbjct: 633 KNLRVCGDCHEAIKHISKVTGREIVIRDNNRFHCFSDGACSCRDYW 678
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 87/161 (54%), Gaps = 2/161 (1%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
+ G RN+ V +L+DMY KCG +E AR VF M E+ + WSAMIQG A +G +EA+
Sbjct: 233 ECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIE 292
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F +M ++ ++P+ +G L +C +G ++ G M E + + ++D
Sbjct: 293 LFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTS-LIDFY 351
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++ G ++EA + M K + VV+ A++ G ++ + A
Sbjct: 352 AKCGSMEEALGVYKMMKEK-DRVVFNAVISGLAMYGQVGAA 391
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++GF ++ V ++ Y KCG L A +VF +M + V +W+ MI G G+
Sbjct: 126 IHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGK 185
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA+ F ++E G++P+G + +L AC +G ++ GR M E G+ +
Sbjct: 186 FREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCM-RECGLSRNVFVAT 244
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ ++ G ++EA F+ + ++ + V W A++ G
Sbjct: 245 SLVDMYTKCGSMEEA-RFVFDGMVEKDIVCWSAMIQG 280
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 17/190 (8%)
Query: 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF 104
F ++ MI+G+ + A+ + M + I P+ TF +L AC + G
Sbjct: 68 NTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLG-VMI 126
Query: 105 YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKN 164
+S+ + G + +V S+ GFL++A++ +M +K N V W ++ GC
Sbjct: 127 HSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVK-NVVSWTGMICGCIEFGK 185
Query: 165 IDLAEEASRQLDQLDPLNNGYHVV--------LSNIYAEAERWEDVARVRKLMRNLGVKK 216
A + R L + +G+ +V L ++ E+ RW D + MR G+ +
Sbjct: 186 FREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDL--ESGRWID-----RCMRECGLSR 238
Query: 217 TPGWSSITVD 226
++ VD
Sbjct: 239 NVFVATSLVD 248
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 176/351 (50%), Positives = 236/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G+ + + N L+ Y KCG A VF +M +R V +W+A+I G A HG+
Sbjct: 670 IHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGR 729
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++ L F +M GIKP+ VTF+ LL AC H G ++EGRR+F SM+ ++GI P IEHYG
Sbjct: 730 GQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYG 789
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L E I+ MP + N +WGALLG CR+H N+ +AE A+ +LDP
Sbjct: 790 CMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPD 849
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N +V LS++YA A W+ A++RKLM GV K PG S I V +H FVA D +HP+
Sbjct: 850 NAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHYFVAEDRSHPE 909
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+EKI+ +KL MK++GY+P+T V+ D++E EKE + HSE+LA+ +GL++T PGT
Sbjct: 910 SEKIYAELDKLTHAMKMEGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTLPGT 969
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH A K I++IV+REIV RD NRFH F+ G CSCGDYW
Sbjct: 970 PIRIFKNLRVCPDCHTATKFITKIVDREIVARDVNRFHHFKDGVCSCGDYW 1020
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 133/271 (49%), Gaps = 12/271 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H+ ++G + V NTL++MY CG ++ AR+VF M +R + ++AMI G A H
Sbjct: 568 RIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHN 627
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
KEAL F+++ E G+KP+ VT+I +L+AC + G ++ + +S+ + G +
Sbjct: 628 LGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKE-IHSLVLKDGYLSDTSLG 686
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH-KNIDLAEEASR-QLDQL 178
+V ++ G +A M +K N + W A++GGC H + D+ + R +++ +
Sbjct: 687 NALVSTYAKCGSFSDALLVFDKM-MKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGI 745
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD-----GVVHEFV 233
P + +LS E + R+ G+ T VD G + E
Sbjct: 746 KPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVE 805
Query: 234 AGDETHP-QAEKIFQMWEKLLDGMKLKGYIP 263
A +T P QA ++W LL ++ G +P
Sbjct: 806 ALIKTMPFQANT--RIWGALLGACRIHGNVP 834
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 95/177 (53%), Gaps = 5/177 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + GF +I V N LI MY +CG ++ AR +F +M + + +W+AMI GLA G
Sbjct: 468 IHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGL 527
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL F M + G+KPN VT+ +L+AC +D GRR + E G+
Sbjct: 528 GAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRR-IHQQVIEAGLATDAHVAN 586
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+V++ S G +++A + M + + V + A++GG H +L +EA + D+L
Sbjct: 587 TLVNMYSMCGSVKDARQVFDRMT-QRDIVAYNAMIGGYAAH---NLGKEALKLFDRL 639
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 84/157 (53%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + +G ++ V L+ MY KCG + R+VF ++ R + W+ MI GLA G
Sbjct: 367 VHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGN 426
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA +++M G+ PN +T++ LL+AC + + GR +S + G + I
Sbjct: 427 WEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGRE-IHSRVVKDGFMFDISVQN 485
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + +R G +++A + N ++ + + W A++GG
Sbjct: 486 ALISMYARCGSIKDA-RLLFNKMVRKDIISWTAMIGG 521
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 89/179 (49%), Gaps = 3/179 (1%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ V N +++MY KCG + AR VF +ME ++V +W+ +I G A G ++ A F KM
Sbjct: 278 DVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQ 337
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
+ G+ PN +T+I +L+A + G+ +S G + +V + ++ G
Sbjct: 338 QEGVVPNRITYINVLNAFSGPAALKWGKT-VHSHILNAGHESDLAVGTALVKMYAKCGSY 396
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGY-HVVLSN 191
++ + + + + + W ++GG N + A E Q+ + + N +V+L N
Sbjct: 397 KDCRQVFEKL-VNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLN 454
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 83/159 (52%), Gaps = 4/159 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME--ERTVFTWSAMIQGLAIH 59
VHE+ Q + N LI+MY++CG +E AR+V+ ++ ERTV +W+AM+ G +
Sbjct: 163 VHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQY 222
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G +EAL +M + G+ T + LL +C ++ GR + + ++ +
Sbjct: 223 GYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGRE-IHVEAMKARLLFDVNV 281
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
C++++ ++ G + EA E M K + V W ++GG
Sbjct: 282 ANCILNMYAKCGSIHEAREVFDKMETK-SVVSWTIIIGG 319
>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 171/352 (48%), Positives = 240/352 (68%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y + R + + L+DMY KCG ++ VF M+++ V W+ MI+GLA+HG+
Sbjct: 247 VHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGR 306
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++LT F++M G+KP+ + FIG L AC H G VD+GR F SM YGI P+IEHYG
Sbjct: 307 GSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYG 366
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL+R G L EA + + MP+KP+ ++WGAL+ GCR HKN++LAE + +L+P
Sbjct: 367 CMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVIKHWIELEPD 426
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+G +V+L NIY+ + R +R LMR GV+KTPG S++ + GV+H+F+ GD +HP+
Sbjct: 427 KSGAYVLLGNIYSASGRHASAREIRNLMREKGVEKTPGCSNVEIKGVIHQFIVGDLSHPR 486
Query: 242 AEKIFQMWEKLLDGMKL-KGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ I W ++ ++L +GY+P+ VLLDIEE+E E L RHSEKLA+ F L++T
Sbjct: 487 IKDILTKWYEIDSRIRLEEGYVPDKKEVLLDIEEEEMESALSRHSEKLAIAFALISTEDY 546
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVC+DCH KLIS++ REI+VRDR RFH F+ G+CSC DYW
Sbjct: 547 MPIRIVKNLRVCQDCHHVTKLISKVYGREIIVRDRTRFHLFKDGTCSCKDYW 598
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 2/144 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NTLI + + G + AR +F EM ER +WSAM+ G G +EAL F++M G++
Sbjct: 163 NTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVR 222
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ +G+L AC +G +++G ++ + I + +VD+ ++ G +Q E
Sbjct: 223 PDDTVLVGVLAACAQLGALEQG-KWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGME 281
Query: 139 FIRNMPIKPNGVVWGALLGGCRVH 162
M K N + W ++ G +H
Sbjct: 282 VFEGMKDK-NVLAWTTMIKGLAMH 304
>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 172/351 (49%), Positives = 240/351 (68%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +S +NI V L+DMY KCG + AR++F + +R V TW+AMI G HG
Sbjct: 472 IHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGL 531
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ AL F+KM + ++PN +T++ ++ AC H G VDEG R F SM +YG+ P ++HYG
Sbjct: 532 GRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYG 591
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
MVDLL RAG ++EA++FI NMPI P V+GA G C++HKNI++ E+A+++L +L+P
Sbjct: 592 AMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPD 651
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
GYHV+L+NIYA +W VA VRK M G+KKTPG S + + VH F +G THPQ
Sbjct: 652 EGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQ 711
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I+ E+L+ +K GY+P+T+++ LD+E+ +E+ L HSEKLA+ FGL+NT PGT
Sbjct: 712 SKRIYAFLEELVYEIKAAGYVPDTNLI-LDVEDDVQEQLLNSHSEKLAIAFGLLNTSPGT 770
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I + KNLRVC DCH A K IS + REI+VRD RFH F+ G CSCGDYW
Sbjct: 771 TIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 127/267 (47%), Gaps = 14/267 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ ++GF + + + L DMY KCG +E AR +F M+++TV +W++M+ G +G+
Sbjct: 270 IHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGE 329
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++A+ F KM+E GI P GVT + LHAC +G ++ G +F + + + I
Sbjct: 330 PEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERG-KFVHKFVDQLNLGSDISVMN 388
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
++ + S+ + A + N+ + + V W A++ G + + A ++ L
Sbjct: 389 SLISMYSKCKRVDIASDIFNNLNGRTH-VSWNAMILGYAQNGRVSEALNCFSEMKSLGMK 447
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ + +V S I A AE V R K + L ++ + +V + H
Sbjct: 448 PDSFTMV-SVIPALAEL--SVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIH-M 503
Query: 242 AEKIFQM--------WEKLLDGMKLKG 260
A K+F M W ++DG G
Sbjct: 504 ARKLFDMISDRHVITWNAMIDGYGTHG 530
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + F N+ +++MY KC ++ A ++F M ER + +W+ +I G + +G
Sbjct: 169 IHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGF 228
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AK+AL +M + G +P+ +T + +L A +G + G+ + G +
Sbjct: 229 AKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKS-IHGYAIRAGFAKLVNIST 287
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ D+ S+ G ++ A M K V W +++ G
Sbjct: 288 ALADMYSKCGSVETARLIFDGMDQK-TVVSWNSMMDG 323
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 61/138 (44%), Gaps = 2/138 (1%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
L+ ++ K G + A RVF ++++ + M++G A + + AL +M +KP
Sbjct: 87 LVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPV 146
Query: 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFI 140
F LL CG + G+ + T + +V++ ++ + +AY+
Sbjct: 147 VYNFTYLLKVCGDNADLKRGKEIHGQLITN-SFAANVFAMTGVVNMYAKCRQIDDAYKMF 205
Query: 141 RNMPIKPNGVVWGALLGG 158
MP + + V W ++ G
Sbjct: 206 DRMPER-DLVSWNTIIAG 222
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/352 (51%), Positives = 241/352 (68%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + +SGF + I V N LID Y KCG L+ AR VF M R+ +W+AMI G+A+HG
Sbjct: 291 LHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGY 350
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA+ FN+M E IKP+ +TFI +L+AC H G VD G +F M YGI P IEHYG
Sbjct: 351 GEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYG 410
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL RAG LQ+AY+F+ MPI PN +VW LLG C +H N+ LA + RQL +LDP
Sbjct: 411 CMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPE 470
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G HV+LSNIYA A +W+DVA +R+ M + +KKTPGWS I V+ +++ FVAG++ +
Sbjct: 471 NSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGEKQNDI 530
Query: 242 AEKIFQMWEKLLDGMKLK-GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
A + Q +++ ++++ GY+P VL DIE +EKE + +HSEKLA+ FG+ P G
Sbjct: 531 AVEAHQKLREIMSRLRIEGGYVPEVGSVLHDIEVEEKEDSVSQHSEKLAVAFGMAKLPRG 590
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR++KNLR+C DCH KLIS++ EIVVRDR+RFH F GSCSC DYW
Sbjct: 591 RAIRVVKNLRICRDCHTVMKLISKVYEVEIVVRDRSRFHSFTHGSCSCRDYW 642
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 5/170 (2%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ N ++ Y K G L+ AR VF++M + +WS MI G A +G +A F ++
Sbjct: 201 RNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREV 260
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
G++PN V+ G+L AC G + G R + + G + I ++D S+ G
Sbjct: 261 RREGMRPNEVSLTGVLSACAQAGAFEFG-RILHGFVEKSGFLQIISVNNALIDTYSKCGN 319
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182
L A NM ++ + V W A++ G +H EEA R ++++ N
Sbjct: 320 LDMARLVFDNM-LRRSAVSWTAMIAGMAMH---GYGEEAIRLFNEMEESN 365
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 91/203 (44%), Gaps = 14/203 (6%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK-PNGVTFIGLLH 89
L ARR+F+++ VF ++ +I+GL+ AL F +M + P+ +F LL
Sbjct: 55 LHYARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLK 114
Query: 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNG 149
A + + G + + + YG+ + ++ + + L A + M I+PN
Sbjct: 115 AAANCRALTNGLQ-LHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEM-IEPNI 172
Query: 150 VVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN--GYHVVLSNIYAEAERWEDVARVRK 207
V W A++ C + + AE+ R + P+ N ++++L+ E + R+
Sbjct: 173 VAWNAIVAACFRCEGVKDAEQVFRCM----PIRNLTSWNIMLAGYTKAGE----LQLARE 224
Query: 208 LMRNLGVKKTPGWSSITVDGVVH 230
+ + +K WS++ V G H
Sbjct: 225 VFMKMPLKDDVSWSTMIV-GFAH 246
>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
Length = 1280
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/353 (50%), Positives = 246/353 (69%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIH 59
RVH Y + G N V N LID+Y KCG + ARR+F EM RTV +W+++I GLA +
Sbjct: 928 RVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAAN 987
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G KEAL F+ M + P +T +G+L+AC H G VD+G R+F M +YGI P+IEH
Sbjct: 988 GFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEH 1047
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
GCMVDLL RAG ++EAY++I MP++PN VVW LLG C +HK ++L + A +L +LD
Sbjct: 1048 LGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELD 1107
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P ++G +V+LSN+YA W DV +RK M V+K PG S + + V+EFV GD +H
Sbjct: 1108 PGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSH 1167
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P++E+I++M ++ + ++ +GYIP TS VL DIEE+EKE L HSE+LA+ F L+ + P
Sbjct: 1168 PESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLP 1227
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIRI+KNLR+C DCH AF LIS++ +REI+VRDR+RFH FQ G+CSC DYW
Sbjct: 1228 GIPIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 1280
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER--TVFTWSAMIQGLAIH 59
+H + ++GF + V N+L+ +Y CG E A +VF EM R + +W++M+ A +
Sbjct: 826 LHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAAN 885
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G+ E LT F +M+ + P+G T + +L AC G + GRR + + G++
Sbjct: 886 GRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRR-VHVYVEKVGLVENSHV 944
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++DL ++ G + +A M + V W +L+ G
Sbjct: 945 SNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVG 983
>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
Length = 668
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/351 (50%), Positives = 246/351 (70%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y ++G ++R+ L+DM+ +CG + A +VF +M ER V W+A I +A+ G
Sbjct: 319 VHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGN 378
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ A FN+M+ G+KP+ V F+ +L AC H G V++G F S+ ++GI PQIEHYG
Sbjct: 379 GEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIF-SLMEDHGISPQIEHYG 437
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L+EA++ I++MP++PN VVWG+LL CRVHKN+++A A+ ++++L P
Sbjct: 438 CMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQ 497
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
G HV+LSNIYA A +W DVARVR +R GV+K PG SS+ V+GV+HEF +GDE+HP+
Sbjct: 498 RAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPE 557
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
I M +++ G+IP+ S VLLD++E+EKE L RHSEKLA+ FGL+ T
Sbjct: 558 MTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSM 617
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR++KNLR+C DCH+ K+ S I NREI+VRD NRFH F+ G CSC DYW
Sbjct: 618 PIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 668
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 78/155 (50%), Gaps = 5/155 (3%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N + N L+DMY+KCG ++ A+R+F E +R + ++ ++ A G A+EAL ++M+
Sbjct: 225 NKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEML 284
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGR----RFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+ G +P+ VT + + A + + G+ + ++ + GI + +VD+ +R
Sbjct: 285 QQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTALVDMFAR 344
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKN 164
G Q A + M + + W A +G + N
Sbjct: 345 CGDPQSAMQVFNKM-TERDVSAWTAAIGTMAMEGN 378
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 11/143 (7%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + G ++ + N LI Y +CG ++ +VF M ER V +W+++I G A
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGD 211
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ KEA++ F +M+ N V L+ G +D +R F ++ Y
Sbjct: 212 RPKEAVSLFFEML------NKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVL-----Y 260
Query: 121 GCMVDLLSRAGFLQEAYEFIRNM 143
++ +R G +EA + M
Sbjct: 261 NTILSNYARQGLAREALAILDEM 283
Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 31 LEGARRVFIEMEER-----TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFI 85
L+ AR+ F +E +F +++I+G + G +EA+ + +M+ +G+ PN TF
Sbjct: 76 LDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFP 135
Query: 86 GLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPI 145
+L C + EG + S+ + G+ + C++ + G + ++ M
Sbjct: 136 FVLSGCTKIAAFCEGIQVHGSV-VKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMS- 193
Query: 146 KPNGVVWGALLGG 158
+ N V W +L+ G
Sbjct: 194 ERNVVSWTSLICG 206
>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 633
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 174/344 (50%), Positives = 241/344 (70%), Gaps = 3/344 (0%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEME---ERTVFTWSAMIQGLAIHGQAKEALTS 68
R N RV L+DMY KCG LE A VF ++ +R V W+AMI G A+HG+++EAL +
Sbjct: 290 RLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEA 349
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
F ++ G+ P +TFIG+L+AC H G VDEGR F +M EYGI+P++EHYGCMVDLL
Sbjct: 350 FGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLG 409
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVV 188
RAG ++EA++ +++M KP+ +W +LLG CR+HKN+ L + + L N+G +V+
Sbjct: 410 RAGRVEEAFDLVQSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVGNGLANSGTYVL 469
Query: 189 LSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQM 248
LSN+YA A +W +V RVR +MR GV+K PG S++ V V EFVAGD +HP++ +I+
Sbjct: 470 LSNMYAAAGKWREVGRVRSMMRASGVQKEPGCSAVEVGRRVVEFVAGDRSHPRSAEIYAK 529
Query: 249 WEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKN 308
E++ + +G++P+T +VL D+++ KE+ L HSEKLAL FGL++TPP T I+I+KN
Sbjct: 530 LEEVNSIARARGHVPHTELVLHDLDDAAKERALAVHSEKLALAFGLISTPPRTGIKIVKN 589
Query: 309 LRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
LR C DCHA KL+SE R+IV RDRNRFH F GSCSCGDYW
Sbjct: 590 LRACADCHAVLKLVSEATGRKIVFRDRNRFHHFVDGSCSCGDYW 633
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 7/163 (4%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
++ Y K G L+ AR +F + + + W+AM+ G HG+ EAL F +M+ G++
Sbjct: 192 TAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVE 251
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG----CMVDLLSRAGFLQ 134
P+ V+ + L A +G + G R+ +S G ++ +VD+ + G L+
Sbjct: 252 PDEVSVVLALSAVAQLGTAESG-RWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLE 310
Query: 135 EAYEFIRNMPIKPNG--VVWGALLGGCRVHKNIDLAEEASRQL 175
EA R++ + V W A++ G +H A EA QL
Sbjct: 311 EAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQL 353
>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
[Vitis vinifera]
Length = 781
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/351 (50%), Positives = 231/351 (65%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+ N+ F NI V LIDMY KCG + A+R+F M E+ TW+AMI G +HG
Sbjct: 431 VHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGY 490
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL FN+M+ + P GVTF+ +L+AC H G V EG F SM ++G P EHY
Sbjct: 491 GHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYA 550
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L +A +FIR MP++P VWGALLG C +HK+ +LA AS +L +LDP
Sbjct: 551 CMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQ 610
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+V+LSNIY+ + + + A VR +++ + KTPG + I V +H F +GD++HPQ
Sbjct: 611 NVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQ 670
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A I+ M EKL M+ G+ T L D+EE+EKE + HSEKLA+ FGL+ + PGT
Sbjct: 671 ATAIYAMLEKLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITSEPGT 730
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC DCH A K IS+I R IVVRD NRFH F+ G CSCGDYW
Sbjct: 731 EIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 781
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 2/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + +SG N V L +Y + +E AR +F E E+++ +W+AMI G A +G
Sbjct: 330 IHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGL 389
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++A++ F +M + ++PN VT +L AC +G + G ++ + + I
Sbjct: 390 TEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLG-KWVHDLINRESFESNIFVST 448
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++ G + EA MP K N V W A++ G +H
Sbjct: 449 ALIDMYAKCGSITEAQRLFSMMPEK-NAVTWNAMISGYGLH 488
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 76/183 (41%), Gaps = 33/183 (18%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF + V L +Y KCG +E AR +F ++ + + +++AMI G + + + ++ F
Sbjct: 237 GFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLF 296
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR---------------RFFYSMTTEYGII 114
+++ G K N + +GL+ G + R ++TT Y +
Sbjct: 297 KELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRL 356
Query: 115 PQIE---------------HYGCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALL 156
+IE + M+ ++ G ++A + M ++PN V ++L
Sbjct: 357 NEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSIL 416
Query: 157 GGC 159
C
Sbjct: 417 SAC 419
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
+GF ++ V + ++ Y K + AR+VF M ER W+ M+ GL + EA+
Sbjct: 135 AGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILI 194
Query: 69 FNKMIEIGIKPNGVTFIGLL 88
F M++ GI + T +L
Sbjct: 195 FGDMVKGGIGFDSTTVAAVL 214
>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
Length = 1434
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 176/337 (52%), Positives = 242/337 (71%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R H Y + G N+ N L+D+Y KCG + A +VF EMEE++V +W+++I GLA++G
Sbjct: 117 RAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNG 176
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
KEAL F ++ G+ P+ +TF+G+L+AC H G VDEG +F M EYGI+P+IEHY
Sbjct: 177 FGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHY 236
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLL RAG +++A+EFI+NMP++PN VVW LLG C +H ++ L E A QL QL+P
Sbjct: 237 GCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEP 296
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++G +V+LSN+YA +RW DV +VR+ M GVKKTPG S + + +HEFV GD +HP
Sbjct: 297 KHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHP 356
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q E+I+ ++ +KL+GY+P+ S VL DIEE+EKE L HSEK+A+ F L+NT G
Sbjct: 357 QTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAAG 416
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNR 337
PIR++KNLRVC DCH A KLIS++ +REIVVRDR+R
Sbjct: 417 IPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRSR 453
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 93/162 (57%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + ++GF + V NTL+ MY CG E A ++F M ER + TW+++I G A++G
Sbjct: 16 KVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNG 75
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EALT F +M G++P+G T + LL AC +G + GRR M + G+ +
Sbjct: 76 RPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYM-VKVGLDGNLHAG 134
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++DL ++ G +++A++ M K + V W +L+ G V+
Sbjct: 135 NALLDLYAKCGSIRQAHKVFDEMEEK-SVVSWTSLIVGLAVN 175
>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
Length = 592
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/353 (50%), Positives = 246/353 (69%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIH 59
RVH Y + G N V N LID+Y KCG + ARR+F EM RTV +W+++I GLA +
Sbjct: 240 RVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAAN 299
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G KEAL F+ M + P +T +G+L+AC H G VD+G R+F M +YGI P+IEH
Sbjct: 300 GFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEH 359
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
GCMVDLL RAG ++EAY++I MP++PN VVW LLG C +HK ++L + A +L +LD
Sbjct: 360 LGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELD 419
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P ++G +V+LSN+YA W DV +RK M V+K PG S + + V+EFV GD +H
Sbjct: 420 PGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSH 479
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P++E+I++M ++ + ++ +GYIP TS VL DIEE+EKE L HSE+LA+ F L+ + P
Sbjct: 480 PESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLP 539
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIRI+KNLR+C DCH AF LIS++ +REI+VRDR+RFH FQ G+CSC DYW
Sbjct: 540 GIPIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 592
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM--EERTVFTWSAMIQGLAIH 59
+H + ++GF + V N+L+ +Y CG E A +VF EM R + +W++M+ A +
Sbjct: 138 LHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAAN 197
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G+ E LT F +M+ + P+G T + +L AC G + GRR + + G++
Sbjct: 198 GRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRR-VHVYVEKVGLVENSHV 256
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++DL ++ G + +A M + V W +L+ G
Sbjct: 257 SNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVG 295
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 174/353 (49%), Positives = 249/353 (70%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQS-GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
VH Y +++ N + +LIDMY KCGC+E A RVF M R + +W+AM+ G A+HG
Sbjct: 386 VHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHG 445
Query: 61 QAKEALTSFNKMIEIGI-KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
A+ AL F++M+ G+ +P+ +TF+G+L AC G VD G ++F SM +YGI P+++H
Sbjct: 446 HAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQH 505
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YGCM+DLL+RA +EA ++NM ++P+G +WG+LL C+ H ++ E + +L QL+
Sbjct: 506 YGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLE 565
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N G V+LSNIYA A RW+DVAR+R + + G+KK PG +SI +DG VHEF+ GD+ H
Sbjct: 566 PENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVGDKFH 625
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ I++M ++ ++ G++PNTS VL D++E+ KE L +HSEKLA++FGL+ T P
Sbjct: 626 PECNNIYKMLNEVDKLLEENGFVPNTSEVLYDMDEEWKEGALSQHSEKLAISFGLIKTKP 685
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GT IRI+KNLRVC +CH+A KLIS+I NREI+ RDRNRFH F+ G CSC D W
Sbjct: 686 GTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGFCSCNDCW 738
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 87/161 (54%), Gaps = 1/161 (0%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
+GF N+++ N LIDMY KCG + AR +F +EE+ V +W+ MI G + +EAL
Sbjct: 291 DNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALA 350
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F M+ +KPN VTF+G+LHAC +G +D G+ + + ++D+
Sbjct: 351 LFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMY 410
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++ G ++ A R+M + N W A+L G +H + + A
Sbjct: 411 AKCGCIEAAERVFRSMHSR-NLASWNAMLSGFAMHGHAERA 450
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 6/165 (3%)
Query: 7 NQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEAL 66
++S R + LI YV GCL+ ARR+F E+ + V +W+AMI G G+ +EA+
Sbjct: 190 DKSSLRDAVSF-TALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAI 248
Query: 67 TSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126
F +M E + PN T + +L ACGH + G ++ S + G ++ ++D+
Sbjct: 249 VCFYEMQEANVLPNKSTMVVVLSACGHTRSGELG-KWIGSWVRDNGFGSNLQLTNALIDM 307
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
+ G A E + K + + W ++GG + + L EEA
Sbjct: 308 YCKCGETDIARELFDGIEEK-DVISWNTMIGG---YSYLSLYEEA 348
>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Brachypodium distachyon]
Length = 892
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/352 (51%), Positives = 242/352 (68%), Gaps = 1/352 (0%)
Query: 2 VHEY-SNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+H Y N + ++RV LIDMY KCG L A VF + ++ + W+AMI G A+HG
Sbjct: 541 LHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHG 600
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+++AL F + E G+ P +TFIGLL+AC H G V+EGR FF SM EYGI P+IEHY
Sbjct: 601 DSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHY 660
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLL RAG ++EA+ +++M I P+ V+W +LL CR+HKN+ L ++ + L
Sbjct: 661 GCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGL 720
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G +++LSNIYA W +VARVR +M+ G++K PG SSI +D V+EFVAGD +HP
Sbjct: 721 ANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREVYEFVAGDMSHP 780
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ ++I+ M +K+ +K G++P T +VL D++E KEK L HSEKLAL FGL++T PG
Sbjct: 781 RTDEIYVMLDKMNGLVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLALAFGLISTQPG 840
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I+I+KNLR C DCHA KLIS I R+IV RDRNRFH F GSCSCGDYW
Sbjct: 841 ATIKIVKNLRACSDCHAVLKLISRITGRKIVFRDRNRFHHFVDGSCSCGDYW 892
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 1/146 (0%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
++ Y G L+ AR +F + + W+AMI G HG+ EAL F +M+ G++
Sbjct: 457 TAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVE 516
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ VT + +L A +G V+ G+ + + + ++D+ + G L +A +
Sbjct: 517 PDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVD 576
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKN 164
+ K + VVW A++ G +H +
Sbjct: 577 VFHGIGDK-DIVVWNAMINGYAMHGD 601
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/351 (50%), Positives = 236/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y + + + + LID Y KCG ++ + VF EM + VFTW+A+IQGLA +G+
Sbjct: 345 VHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGE 404
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K AL F+ M+E +KPN VTFIG+L AC H VD+GR F SM ++ I P+IEHYG
Sbjct: 405 GKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYG 464
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+L RAGFL+EAY+FI NMP PN VVW LL CR HKNI++AE++ + +L+P
Sbjct: 465 CMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPA 524
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +++LSN YA R ED RVR L++ +KK PG S I +DGVVHEF + D H
Sbjct: 525 HSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKH 584
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I +K++ +K GY+PNT L+ EE+ KE + HSEKLA+ +GL+ T P T
Sbjct: 585 SKEIHDALDKMMKQIKRLGYVPNTDDARLEAEEESKETSVSHHSEKLAIAYGLIRTSPRT 644
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI KNLR+C DCH A K IS++ R I+VRDRNRFH F+ G CSC DYW
Sbjct: 645 TIRISKNLRMCRDCHNATKFISQVFERMIIVRDRNRFHHFKDGLCSCNDYW 695
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+ EY G RRN + +LIDMY KCG ++ AR++F EM++R V WSAMI G A +
Sbjct: 244 IGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADR 303
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR-RFFYSMTTEYGIIPQIEHY 120
KEAL F++M + + PN VT + +L++C +G + G+ FY + + +
Sbjct: 304 CKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQ 363
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D ++ G++ + E + M K N W AL+ G
Sbjct: 364 --LIDFYAKCGYIDRSVEVFKEMSFK-NVFTWTALIQG 398
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH +SGF+ N V NTLI MY CG + AR VF M ER++ W++M+ G +G
Sbjct: 142 QVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNG 201
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
E + F K++E+ I+ + VT I +L ACG + ++ G + ++ G+
Sbjct: 202 LWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSK-GLRRNNTLT 260
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ ++ G + A + M K + V W A++ G
Sbjct: 261 TSLIDMYAKCGQVDTARKLFDEMD-KRDVVAWSAMISG 297
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90
++ A +F +++ ++ MI+GLA AL F KM E ++ + TF +L A
Sbjct: 71 IDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKA 130
Query: 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGV 150
C M + EG + +++ + G ++ + + G + A MP + + V
Sbjct: 131 CSRMKALREGEQ-VHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMP-ERSIV 188
Query: 151 VWGALLGG 158
W ++L G
Sbjct: 189 AWNSMLSG 196
>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 703
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/352 (49%), Positives = 241/352 (68%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ SG ++RV L+ MY K G ++ AR VF M+ R V +W+AMI GLA HG
Sbjct: 352 KIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHG 411
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++AL F +M G+KP+ VTF+ +L AC H G VDEGR + +MT YGI P + H
Sbjct: 412 LGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHC 471
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG L EA FI NM + P+ WGALLG CR + N++L E +++ +LDP
Sbjct: 472 NCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDP 531
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N +V+LSNIYAEA +W+ V+ VR +MR G++K PG S I VD +H+F+ D +HP
Sbjct: 532 KNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVADSSHP 591
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ ++I + +K+++ +K +GYIP+T +VL + K+KE + HSEKLA+ +GLM+TPPG
Sbjct: 592 ECKEINESKDKVIEKIKAEGYIPDTRLVLKNKNMKDKELDICSHSEKLAIVYGLMHTPPG 651
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLRVC DCH A KLIS++ REI+VRD NRFH F+ G CSCGDYW
Sbjct: 652 NPIRVFKNLRVCTDCHGATKLISKVEGREIIVRDANRFHHFKDGVCSCGDYW 703
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 8/165 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH ++ +G ++RV L+ MY K G ++ AR VF M+ R V +W+ MI A HG
Sbjct: 251 RVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHG 310
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMG---WVDEGRRFFYSMTTEYGIIPQI 117
+ EA F +M G KP+ + F+ +L+AC G WV + R + G+ +
Sbjct: 311 RGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRH----ALDSGLEVDV 366
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+V + S++G + +A M ++ N V W A++ G H
Sbjct: 367 RVGTALVHMYSKSGSIDDARVVFDRMKVR-NVVSWNAMISGLAQH 410
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 8/164 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH G ++RV L+ MY KCG + ARR+F + + +W+ MI A G
Sbjct: 151 VHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGN 210
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHAC---GHMGWVDEGRRFFYSMTTEYGIIPQIE 118
KEA +M + G KPN +T++ +L+AC G + WV R + G+ +
Sbjct: 211 GKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRH----ALDAGLELDVR 266
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+V + +++G + +A M ++ + V W ++G H
Sbjct: 267 VGTALVQMYAKSGSIDDARVVFDRMKVR-DVVSWNVMIGAFAEH 309
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 111/260 (42%), Gaps = 47/260 (18%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH+ +S +N V N L+ +Y++CG L+ AR VF + +++ +W+AMI G H
Sbjct: 49 QVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHK 108
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHAC----------------------------- 91
A++A+ F +M G++PN T++ +L AC
Sbjct: 109 HAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGT 168
Query: 92 ------GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP- 144
G G ++E RR F ++ I + M+ +++G +EAY + M
Sbjct: 169 ALLRMYGKCGSINEARRIFDNLMNH-----DIISWTVMIGAYAQSGNGKEAYRLMLQMEQ 223
Query: 145 --IKPNGVVWGALLGGCRVHKNIDLAEEASRQ-LDQLDPLNNGYHVVLSNIYAEAERWED 201
KPN + + ++L C + + R LD L+ L +YA++ +D
Sbjct: 224 EGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDD 283
Query: 202 VARVRKLMRNLGVKKTPGWS 221
R + + V+ W+
Sbjct: 284 ---ARVVFDRMKVRDVVSWN 300
>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 595
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 174/353 (49%), Positives = 250/353 (70%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R H Y + G RN+ N L+D+Y +CG +E A+ +F EM ++ +W+++I GLA++G
Sbjct: 243 RFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNG 302
Query: 61 QAKEALTSFNKM-IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
KEA+ F M + G+ P +TF+G+L+AC H G V EG +F M+ EY I P+IEH
Sbjct: 303 LGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEH 362
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
+GCMVDLL+RAG +++AYE+I MP++PN V+W LLG C VH + DLAE A ++ QL+
Sbjct: 363 FGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLAELARMKILQLE 422
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P ++G +V+LSN+YA +RW DV ++RK M GV+K PG S + V VHEF+ GD++H
Sbjct: 423 PNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDKSH 482
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
PQ + I+ +++ D ++L+GY+P S V +D+EE+EKE L HSEK+A+ F L++TP
Sbjct: 483 PQNDMIYAKLKEMTDRLRLEGYVPQISNVYVDVEEEEKENALVYHSEKIAIAFMLISTPE 542
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR++KNL+VC DCH A KL+S++ NREIVVRDR+RFH F+ GSCSC DYW
Sbjct: 543 RWPIRVVKNLKVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 89/161 (55%), Gaps = 2/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +SGF I V N+L+ +Y CG + A +VF +M E+ + W+++I G A +G+
Sbjct: 143 IHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGK 202
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL + +M GIKP+G T + LL AC +G + G+RF M + G+ +
Sbjct: 203 PEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYM-IKVGLTRNLHSSN 261
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++DL +R G ++EA M + N V W +L+ G V+
Sbjct: 262 VLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVGLAVN 301
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 4/127 (3%)
Query: 34 ARRVFIEMEER-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG-IKPNGVTFIGLLHAC 91
A +VF ++E+ VF W+ +I+G A G + A++ + +M G ++P+ T+ LL A
Sbjct: 72 AHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAV 131
Query: 92 GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV 151
G M V G +S+ G I ++ L + G + AY+ MP K + V
Sbjct: 132 GKMADVRLGET-IHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEK-DLVA 189
Query: 152 WGALLGG 158
W +++ G
Sbjct: 190 WNSVING 196
>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/351 (50%), Positives = 246/351 (70%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y ++G ++R+ L+DM+ +CG + A +VF +M ER V W+A I +A+ G
Sbjct: 487 VHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGN 546
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ A FN+M+ G+KP+ V F+ +L AC H G V++G F S+ ++GI PQIEHYG
Sbjct: 547 GEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIF-SLMEDHGISPQIEHYG 605
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L+EA++ I++MP++PN VVWG+LL CRVHKN+++A A+ ++++L P
Sbjct: 606 CMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQ 665
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
G HV+LSNIYA A +W DVARVR +R GV+K PG SS+ V+GV+HEF +GDE+HP+
Sbjct: 666 RAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPE 725
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
I M +++ G+IP+ S VLLD++E+EKE L RHSEKLA+ FGL+ T
Sbjct: 726 MTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSM 785
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR++KNLR+C DCH+ K+ S I NREI+VRD NRFH F+ G CSC DYW
Sbjct: 786 PIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 836
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 89/178 (50%), Gaps = 5/178 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + G ++ + N LI Y +CG ++ +VF M ER V +W+++I G A
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGD 211
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ KEA++ F +M+E GI+P+ VT + ++ AC + +D G R + E G+
Sbjct: 212 RPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGER-VCAYIGELGLKLNKVMV 270
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+VD+ + G + A + + N V++ +L + LA EA LD++
Sbjct: 271 NALVDMYMKCGAIDAAKRLF-DECVDRNLVLYNTILSN---YARQGLAREALAILDEM 324
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 111/222 (50%), Gaps = 19/222 (8%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RV Y + G + N + N L+DMY+KCG ++ A+R+F E +R + ++ ++ A G
Sbjct: 253 RVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQG 312
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A+EAL ++M++ G +P+ VT + + A + VD F+ + Y I +E +
Sbjct: 313 LAREALAILDEMLQQGPRPDRVTMLSAISASAQL--VD---LFYGKVCHGYVIRNGLEGW 367
Query: 121 ----GCMVDLLSRAGFLQEA---YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR 173
++D+ + G + A ++ + N + V W +L G + +++ A E
Sbjct: 368 DSIGNVIIDMYMKCGKPEMACRVFDLMSNKTV----VSWNSLTAGFIRNGDVESAWEVFN 423
Query: 174 QLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVK 215
Q+ + + + ++ ++S + + +ED + + M+ G+K
Sbjct: 424 QIPERNAVF--WNTMISGL-VQKSLFEDAIELFREMQGEGIK 462
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 33/193 (17%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H Y ++G + N +IDMY+KCG E A RVF M +TV +W+++ G +G
Sbjct: 356 HGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDV 415
Query: 63 KEALTSFNKM------------------------IEI-------GIKPNGVTFIGLLHAC 91
+ A FN++ IE+ GIK + VT +G+ AC
Sbjct: 416 ESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASAC 475
Query: 92 GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV 151
G++G E ++ ++ + GI + +VD+ +R G Q A + M + +
Sbjct: 476 GYLG-APELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMT-ERDVSA 533
Query: 152 WGALLGGCRVHKN 164
W A +G + N
Sbjct: 534 WTAAIGTMAMEGN 546
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 31 LEGARRVFIEMEER-----TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFI 85
L+ AR+ F +E +F +++I+G + G +EA+ + +M+ +G+ PN TF
Sbjct: 76 LDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFP 135
Query: 86 GLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPI 145
+L C + EG + S+ + G+ + C++ + G + ++ M
Sbjct: 136 FVLSGCTKIAAFCEGIQVHGSV-VKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMS- 193
Query: 146 KPNGVVWGALLGG 158
+ N V W +L+ G
Sbjct: 194 ERNVVSWTSLICG 206
>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g49142
gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
Length = 686
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 173/357 (48%), Positives = 242/357 (67%), Gaps = 5/357 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y + N+ + N LIDMY KCGCLE AR VF M+ R V +W+AMI G
Sbjct: 330 KIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSG 389
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +A+ F+K+ + G+ P+ + F+ L AC H G ++EGR F MT Y I P++EH
Sbjct: 390 RGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHL 449
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG ++EAY FI++M ++PN VWGALLG CRVH + D+ A+ +L QL P
Sbjct: 450 ACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAP 509
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+GY+V+LSNIYA+A RWE+V +R +M++ G+KK PG S++ V+ ++H F+ GD +HP
Sbjct: 510 EQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHP 569
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP-- 298
Q+++I++ + L+ MK GY+P++ L D+EE++KE L HSEKLA+ F LMNT
Sbjct: 570 QSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEE 629
Query: 299 ---PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI KNLR+C DCH A KLIS+I +REI++RD NRFH F+ G CSCGDYW
Sbjct: 630 EEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 115/283 (40%), Gaps = 18/283 (6%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH R N + L+ Y + AR+VF E+ ER V + MI+ +G
Sbjct: 61 VHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGF 120
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
E + F M ++P+ TF +L AC G + GR+ S T+ G+ +
Sbjct: 121 YGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGS-ATKVGLSSTLFVGN 179
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+V + + GFL EA + M + + V W +L+ G ++ D A E R+++ +
Sbjct: 180 GLVSMYGKCGFLSEARLVLDEMS-RRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKIS 238
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGW---------SSITVDGV-VHE 231
++ + E+V V+ + +G K W +++ V+ V ++
Sbjct: 239 HDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYS 298
Query: 232 FVAGDETHPQAEKIFQMWEKLLD------GMKLKGYIPNTSVV 268
+ D P A I + D G K+ GYI ++
Sbjct: 299 RMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLI 341
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 10/227 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G + V N L+ MY KCG L AR V EM R V +W++++ G A +
Sbjct: 161 KIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQ 220
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +AL +M + I + T LL A + E + M + G + +
Sbjct: 221 RFDDALEVCREMESVKISHDAGTMASLLPAVSNT--TTENVMYVKDMFFKMG-KKSLVSW 277
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
M+ + + EA E M +P+ V ++L C + L ++ +++
Sbjct: 278 NVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIER 337
Query: 178 LDPLNN-GYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSI 223
+ N L ++YA+ E + R + N+ + W+++
Sbjct: 338 KKLIPNLLLENALIDMYAKCGCLE---KARDVFENMKSRDVVSWTAM 381
>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
Length = 822
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 168/352 (47%), Positives = 249/352 (70%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++GF + V N+L+ MY +CG LE A R F E+++R V +W++MI GLA HG
Sbjct: 471 QLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHG 530
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A+ AL+ F+ MI G+KPN VT+I +L AC H+G V EG+ +F SM ++G+IP++EHY
Sbjct: 531 YAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHY 590
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL+R+G ++EA EFI MP+K + +VW LLG CR H NI++ E A++ + +L+P
Sbjct: 591 ACMVDLLARSGLVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEP 650
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +V+LSN+YA+A W++VAR+R MR+ + K G S + V+ HEF AGD +HP
Sbjct: 651 RDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHP 710
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+A+ I+ + L+ +K GY+P+TS+VL D+ ++ KE++L +HSEK+A+ FGL+ T
Sbjct: 711 RAQDIYGKLDTLVGEIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAP 770
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH+A K +S+ REI++RD NRFH + G CSCG+YW
Sbjct: 771 KPIRIFKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEE-RTVFTWSAMIQGLAIHGQAKEALTSFNK 71
R+ V N+L+ +Y +CG + AR VF M R + +W+AM LA +G +E+L +
Sbjct: 82 RDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLIGE 141
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGII-PQIEHYGCMVDLLSRA 130
M+E G+ PN T + HAC + + G+ I ++D+L+R
Sbjct: 142 MLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGLWGTDIAVGSALIDMLARN 201
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLG 157
G L A + + I+ VVW L+
Sbjct: 202 GDLASARKVFDGL-IEKTVVVWTLLIS 227
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCG---CLEGARRVFIEMEERTVFTWSAMIQGLA 57
++H + + GF + V L+DMY K ++ A +VF M + V +W+A+I G
Sbjct: 275 QLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYV 334
Query: 58 IHG-QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRR 102
G Q + + F +M+ IKPN +T+ +L AC ++ D GR+
Sbjct: 335 QSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSGRQ 380
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 75/148 (50%), Gaps = 5/148 (3%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
+I V + LIDM + G L AR+VF + E+TV W+ +I A+EA+ F +
Sbjct: 187 DIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFL 246
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
E G +P+ T ++ AC +G V G + +S+ G +VD+ +++ +
Sbjct: 247 EDGFEPDRYTMSSMISACTELGSVRLGLQ-LHSLALRMGFASDACVSCGLVDMYAKSN-I 304
Query: 134 QEAYEFIRNM--PIKPNGVV-WGALLGG 158
++A ++ + ++ N V+ W AL+ G
Sbjct: 305 EQAMDYANKVFERMRKNDVISWTALISG 332
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 12/162 (7%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + +S V N L+ MY + GC+E ARRVF ++ ER++ S + +G
Sbjct: 380 QVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMI--SCITEG----- 432
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
L +++GI + TF L+ A +G + +G++ ++MT + G
Sbjct: 433 -RDAPLDHRIGRMDMGISSS--TFASLISAAASVGMLTKGQQ-LHAMTLKAGFGSDRFVS 488
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+V + SR G+L++A + + N + W +++ G H
Sbjct: 489 NSLVSMYSRCGYLEDACRSFNELKDR-NVISWTSMISGLAKH 529
>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/346 (51%), Positives = 237/346 (68%), Gaps = 3/346 (0%)
Query: 9 SGFRRN--IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEAL 66
+GF N + V LID+YVKCG L AR+VF M+ER + TWSAMI G +HG +EAL
Sbjct: 237 TGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREAL 296
Query: 67 TSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126
F++M + +KP+ +TF+ +L AC H G V EG F SM ++G+ P+ EHY CMVD+
Sbjct: 297 NLFDQM-KASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDI 355
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYH 186
L RAG L EA +FI MP++PN VWGALLG CR+H N+DLAE +R L LDP N G +
Sbjct: 356 LGRAGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRY 415
Query: 187 VVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIF 246
V+L NIY + ++ +R LM+N GVKK G+S I + ++ FVAGD +HPQ + I+
Sbjct: 416 VILYNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLIY 475
Query: 247 QMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIM 306
E+L+D ++ +GY P+ + VL D++E+ KE LY HSEKLA+ FGL+N PG+ IRI
Sbjct: 476 SELERLMDRIRQEGYTPDINFVLHDVDEETKESMLYLHSEKLAIVFGLLNLGPGSVIRIR 535
Query: 307 KNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
KNLRVC DCH A K IS++ REIVVRD +RFH F+ G+CSC DYW
Sbjct: 536 KNLRVCGDCHTATKFISKVTGREIVVRDAHRFHHFKNGACSCRDYW 581
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 95/232 (40%), Gaps = 14/232 (6%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V+ ++G + V + M+ +CG +E AR++F + + + TW+ I+
Sbjct: 130 VYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKADM 189
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL +M+ GI P+ +T +G++ AC + +TT + +
Sbjct: 190 PLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAVET 249
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
++DL + G L A + M + N + W A++ G +H EA DQ+
Sbjct: 250 ALIDLYVKCGSLTYARKVFDGMQ-ERNIITWSAMISGYGMHG---WGREALNLFDQMKAS 305
Query: 182 NNGYHVVLSNIYAE-------AERWEDVARVRKLMRNLGVKKTPGWSSITVD 226
H+ +I + AE WE + R+ GV P + VD
Sbjct: 306 VKPDHITFVSILSACSHSGLVAEGWE---CFNSMARDFGVTPRPEHYACMVD 354
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H+ + G++ + + N+LI MY KC E +R+VF EM ++ +WSA+I
Sbjct: 31 RIHQDVVKFGYQSQVFISNSLITMYGKCDKYELSRQVFDEMPDKNAVSWSAIIGACLQDD 90
Query: 61 QAKEALTSFNKMIEIGIKPN 80
+ KE + F +M+ G +P+
Sbjct: 91 RCKEGFSLFRQMLSEGSRPS 110
>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Glycine max]
Length = 609
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 173/352 (49%), Positives = 242/352 (68%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+HEY ++GF + ++V LIDMY KCG L+ A VF +M R WSAMI A HG
Sbjct: 258 IHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGH 317
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+A++ +M + ++P+ +TF+G+L+AC H G V+EG +F+SMT EYGI+P I+HYG
Sbjct: 318 GSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYG 377
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CM+DLL RAG L+EA +FI +PIKP ++W LL C H N+++A+ +++ +LD
Sbjct: 378 CMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDDS 437
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G +V+LSN+ A RW+DV +RK+M + G K PG SSI V+ VVHEF +GD H
Sbjct: 438 HGGDYVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEVNNVVHEFFSGDGVHST 497
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLL-DIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ + ++L+ +KL GY+P+TS+V DIE++EKE L HSEKLA+T+GL+NTPPG
Sbjct: 498 STILHHALDELVKELKLAGYVPDTSLVFYADIEDEEKEIVLRYHSEKLAITYGLLNTPPG 557
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IR++KNLRVC DCH A K IS I R+I++RD RFH F+ G CSCGDYW
Sbjct: 558 TTIRVVKNLRVCVDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 609
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 86/162 (53%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G N+ VC TLI+MY C ++ ARRVF ++ E V ++A+I A +
Sbjct: 156 QLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAIITSCARNS 215
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EAL F ++ E G+KP VT + L +C +G +D G R+ + + G ++
Sbjct: 216 RPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLG-RWIHEYVKKNGFDQYVKVN 274
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++ G L +A ++MP + + W A++ H
Sbjct: 275 TALIDMYAKCGSLDDAVSVFKDMP-RRDTQAWSAMIVAYATH 315
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 176/353 (49%), Positives = 242/353 (68%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGL-AIH 59
R+H+ +G+ ++ + + L+ MY KCG ++ A VF +M ER V W+A+I G A H
Sbjct: 371 RIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQH 430
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G+ +EAL F++M + GIKP+ VTF +L AC H+G V+EGR+ F SM +YGI P +EH
Sbjct: 431 GRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEH 490
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y C VDLL RAG L+EA I +MP P VWGALL CRVH +++ E A+ + +LD
Sbjct: 491 YSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLD 550
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P ++G +V LS+IYA A R+ED +VR++M V K PG S I VDG VH F D++H
Sbjct: 551 PDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSH 610
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P++E+I+ KL + +K GY+P+T VL D++E++KE+ L+ HSE+LA+T+GLM TPP
Sbjct: 611 PESEQIYVELGKLTEQIKEMGYVPDTRFVLHDVDEEQKERILFSHSERLAITYGLMKTPP 670
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIRI+KNLRVC DCH A K IS++V REI+ RD RFH F G CSCGD+W
Sbjct: 671 GMPIRIVKNLRVCGDCHTATKFISKVVGREIIARDAQRFHHFADGVCSCGDFW 723
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 88/159 (55%), Gaps = 2/159 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y QSG+ R + V N+LI MY KCG LE AR++F ++ R V TW+AM+ G A G
Sbjct: 270 KVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLG 329
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA+ F +M + GIKP+ +TF +L +C ++ EG+R + G +
Sbjct: 330 FHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKR-IHQQLVHAGYNLDVYLQ 388
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
+V + ++ G + +A + N + N V W A++ GC
Sbjct: 389 SALVSMYAKCGSMDDA-SLVFNQMSERNVVAWTAIITGC 426
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 2/182 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH +SG + N + NTL+ MY KCG L ARRVF + +R + +W+AMI+ +
Sbjct: 69 VHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNK 128
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA + M G KP+ VTF+ LL+A + + G++ + E G+ +
Sbjct: 129 NLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEI-VEAGLELEPRVGT 187
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+V + ++ G + +A +P K N V W L+ G +D+A E + Q +
Sbjct: 188 SLVGMYAKCGDISKARVIFDRLPEK-NVVTWTLLIAGYAQQGQVDVALELLETMQQAEVA 246
Query: 182 NN 183
N
Sbjct: 247 PN 248
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 4/159 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH ++G RV +L+ MY KCG + AR +F + E+ V TW+ +I G A G
Sbjct: 169 KVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQG 228
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEH 119
Q AL M + + PN +TF +L C ++ G++ Y + + YG ++
Sbjct: 229 QVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYG--RELWV 286
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + + G L+EA + ++P + + V W A++ G
Sbjct: 287 VNSLITMYCKCGGLEEARKLFSDLPHR-DVVTWTAMVTG 324
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 174/353 (49%), Positives = 250/353 (70%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH Y + G RN+ N L+D+Y +CG +E A+ +F EM ++ +W+++I GLA++G
Sbjct: 243 RVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNG 302
Query: 61 QAKEALTSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
KEA+ F M G+ P +TF+G+L+AC H G V EG +F M EY I P+IEH
Sbjct: 303 FGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEH 362
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
+GCMVDLL+RAG +++AYE+I++MP++PN V+W LLG C VH + DLAE A Q+ QL+
Sbjct: 363 FGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLE 422
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P ++G +V+LSN+YA +RW DV ++RK M GVKK PG S + V VHEF+ GD++H
Sbjct: 423 PNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSH 482
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
PQ++ I+ +++ ++ +GY+P S V +D+EE+EKE + HSEK+A+ F L++TP
Sbjct: 483 PQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPE 542
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+PI ++KNLRVC DCH A KL+S++ NREIVVRDR+RFH F+ GSCSC DYW
Sbjct: 543 RSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 2/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +SGF I V N+L+ +Y CG + A +VF +M E+ + W+++I G A +G+
Sbjct: 143 IHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGK 202
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL + +M GIKP+G T + LL AC +G + G+R M + G+ +
Sbjct: 203 PEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM-IKVGLTRNLHSSN 261
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++DL +R G ++EA M + N V W +L+ G V+
Sbjct: 262 VLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVGLAVN 301
Score = 41.2 bits (95), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 4/127 (3%)
Query: 34 ARRVFIEMEER-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG-IKPNGVTFIGLLHAC 91
A +VF ++E+ VF W+ +I+G A G + A + + +M G ++P+ T+ L+ A
Sbjct: 72 AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAV 131
Query: 92 GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV 151
M V G +S+ G I ++ L + G + AY+ MP K + V
Sbjct: 132 TTMADVRLGET-IHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEK-DLVA 189
Query: 152 WGALLGG 158
W +++ G
Sbjct: 190 WNSVING 196
>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 692
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/342 (52%), Positives = 236/342 (69%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
F N + LIDMY KCG A VF +M ++ + W+AMI GL + G K A T
Sbjct: 351 FLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIG 410
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
+M + G+K N TFIGLL +C H G + +GRR+F++MT Y I P+IEHYGC+VDLLSRA
Sbjct: 411 QMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRA 470
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190
G LQEA++ I +MP+ N V+ GALLGGC++H+N +LAE QL +L+P N+G +V+LS
Sbjct: 471 GLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLS 530
Query: 191 NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWE 250
NIY+ RWED A++R M+ GV+K P S + +G VHEF GD++HP +++I++ +
Sbjct: 531 NIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLD 590
Query: 251 KLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLR 310
+L MK GY P T VV+ D+E++EKE L HSEKLA+ F L+ T PG IR+ KNLR
Sbjct: 591 ELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLR 650
Query: 311 VCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
VC DCH A KLIS I +REI+VRD NRFHCF+ GSCSC DYW
Sbjct: 651 VCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 692
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 4/154 (2%)
Query: 6 SNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEA 65
+ Q G +++ V +D+YVKCG + AR VF +M ++ W AM+ G A +G +EA
Sbjct: 245 AEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREA 304
Query: 66 LTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMT-TEYGIIPQIEHYGCMV 124
L F M G++P+ G L AC +G +D GR+ + E+ P + ++
Sbjct: 305 LDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG--TALI 362
Query: 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
D+ ++ G EA+ + M K + +VW A++ G
Sbjct: 363 DMYAKCGSTAEAWVVFQQMR-KKDIIVWNAMILG 395
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S + N V +L+ +Y +CG L A+RVF EM + +W+A+I G
Sbjct: 139 QLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAG 198
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ G++P+ T + +L AC + + G + + E GI +
Sbjct: 199 DLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQE-GIAQSVFVA 257
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
VDL + G + +A E M K + V WGA++GG
Sbjct: 258 TAAVDLYVKCGEMAKAREVFDKMRDK-DAVAWGAMVGG 294
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 170/352 (48%), Positives = 244/352 (69%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+N++ R + +C LIDMY KCG +E A VF M+ ++V W+A+I G A HG
Sbjct: 265 IHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGL 324
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA++ F +M +G+KPN +TF +L AC + G V+EG+ F ++ +Y + P IEHYG
Sbjct: 325 GREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYG 384
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L EA FI+ MP+KPN V+WG+LL C++HKNI+L E+ L ++D
Sbjct: 385 CMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIGEILIEMDSN 444
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G +V ++NI+A ++W+ A R+LMR GV K PG S+I+++G HEF+AGD +H +
Sbjct: 445 HGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISLEGTTHEFLAGDRSHAE 504
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLD-IEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++I W + ++ GY+P +LLD ++++EKE +++HSEKLA+T+GLM T PG
Sbjct: 505 IQEIRTKWRFVRRKLEENGYVPELEDMLLDLVDDEEKEAIVHQHSEKLAITYGLMKTKPG 564
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IRIMKNLRVC+DCH LIS+I R+IV+RDR RFH F+ G CSCGDYW
Sbjct: 565 TTIRIMKNLRVCKDCHKVMNLISKIYKRDIVMRDRTRFHHFKDGKCSCGDYW 616
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 77/148 (52%), Gaps = 9/148 (6%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERT-VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGI 77
N++I YVK G ++ A +F +M E+ +W+ MI G G KEAL F++M +
Sbjct: 180 NSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNV 239
Query: 78 KPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGC--MVDLLSRAGFLQ 134
P+ V+ L AC +G +++G+ Y+ T +I+ C ++D+ ++ G ++
Sbjct: 240 PPDNVSLASALSACSQLGALEQGKWIHSYANKTR----TRIDSVLCCVLIDMYAKCGEME 295
Query: 135 EAYEFIRNMPIKPNGVVWGALLGGCRVH 162
EA +NM K + VW AL+ G H
Sbjct: 296 EALGVFKNMKTK-SVQVWTALISGYAYH 322
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 31/156 (19%)
Query: 34 ARRVFIEMEER-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACG 92
A VF +R F W+ MI+GL+ Q +L +++M+ N TF LL AC
Sbjct: 62 AHDVFFNGFDRPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACS 121
Query: 93 HMGWVDEG-------RRFFY--------SMTTEYGIIPQIEHYGCMVDLLS--------- 128
++ E +F Y S+ Y + +H + D +
Sbjct: 122 NLSAFQETTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNS 181
Query: 129 ------RAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+AG + A R MP K N + W ++ G
Sbjct: 182 VIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISG 217
>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g30700-like [Cucumis sativus]
Length = 788
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/352 (50%), Positives = 230/352 (65%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH N+ V L+DMY KCG + AR++F M ++ V TW+AMI G +HG
Sbjct: 437 VHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGH 496
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEAL F +M++ GI P GVTF+ +L+AC H G V EG F+SM YG P EHY
Sbjct: 497 GKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYA 556
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+L RAG L A EFI MP++P VWGALLG C +HKN ++A AS++L QLDP
Sbjct: 557 CMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPE 616
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+V+LSNIY+ + A VR++++ + KTPG + I +D + F +GD +HPQ
Sbjct: 617 NVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQ 676
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNT-SVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
A IF+M EKL M+ GY T + L D+E++EKE + HSEKLA+ FGL++T PG
Sbjct: 677 ATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKPG 736
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IRI+KNLRVC DCH A K IS+I R IVVRD NRFH F+ G CSCGDYW
Sbjct: 737 TEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 75/146 (51%), Gaps = 3/146 (2%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V L +Y + ++ AR++F E E+++ +W+AMI G +G A++ F +M+
Sbjct: 352 VSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP-Q 410
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
+ PN VT +L AC +G + G ++ + + + + +VD+ ++ G + EA
Sbjct: 411 LSPNPVTVTSILSACAQLGALSIG-KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEA 469
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVH 162
+ ++ + N V W A++ G +H
Sbjct: 470 RQLF-DLMVDKNVVTWNAMITGYGLH 494
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +S G N+ V + ++D+Y K E AR+VF M ER W+ MI G + +
Sbjct: 135 LHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSY 194
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM 94
++++ F M+++G+ + T +L A +
Sbjct: 195 FEDSIRVFVDMLDVGLSFDSTTLATVLTAVAEL 227
>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 848
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/352 (51%), Positives = 240/352 (68%), Gaps = 1/352 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H + ++ ++ V LID+Y KCG L A +F ++ + W+A+I IHG
Sbjct: 498 RIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHG 557
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++AL F +M + G+KP+ VTFI LL AC H G VDEG+ FF+ M EYGI P ++HY
Sbjct: 558 HGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQ-EYGIKPSLKHY 616
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLL RAGFL+ AY+FI++MP+ P+ +WGALLG CR+H NI+L + AS +L ++D
Sbjct: 617 GCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDS 676
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N GY+V+LSNIYA +WE V +VR L R G+KKTPGWSSI V+ V F G+++HP
Sbjct: 677 ENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIFYTGNQSHP 736
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ ++I+ L MK GYIP+ S VL D+EE EKE L HSE+LA+ FG+++TPP
Sbjct: 737 KCKEIYAELRILTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPK 796
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ IRI KNLRVC DCH A K IS I REIVVRD RFH F+ G CSCGDYW
Sbjct: 797 SAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSKRFHHFKNGICSCGDYW 848
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 124/272 (45%), Gaps = 21/272 (7%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + GF+ ++ V +LI MY + G + AR +F +M R + +W+AMI GL +G
Sbjct: 193 KIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNG 252
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A +AL ++M GI + VT +L C +G + + ++G+ ++
Sbjct: 253 NAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTA-TLIHLYVIKHGLEFELFVS 311
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE--ASRQLDQL 178
++++ ++ G L +A + + M ++ + V W +++ + + A QL+ L
Sbjct: 312 NALINMYAKFGNLGDAQKVFQQMFLR-DVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGL 370
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGW--SSITVDGVVHEFVAGD 236
+P + V L++I A++ +++ V G GW ++ + V + A
Sbjct: 371 EP-DLLTLVSLASIAAQSRDYKNSRSVH------GFIMRRGWLMEAVVIGNAVMDMYAKL 423
Query: 237 ETHPQAEKIFQM--------WEKLLDGMKLKG 260
A K+F + W L+ G G
Sbjct: 424 GVIDSAHKVFNLIPVKDVVSWNTLISGYTQNG 455
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 88/182 (48%), Gaps = 12/182 (6%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H SG ++ + L+++Y G + +R F +++ + V+TW++MI +G
Sbjct: 94 RLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNG 153
Query: 61 QAKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+EA+ F +++ + + + TF +L AC + VD GR+ + + G +
Sbjct: 154 HFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTL--VD-GRK-IHCWVFKLGFQWDVFV 209
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
++ + SR GF+ A +MP + G W A++ G + N A++ LD LD
Sbjct: 210 AASLIHMYSRFGFVGIARSLFDDMPFRDMG-SWNAMISGLIQNGN------AAQALDVLD 262
Query: 180 PL 181
+
Sbjct: 263 EM 264
>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 788
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/352 (50%), Positives = 230/352 (65%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH N+ V L+DMY KCG + AR++F M ++ V TW+AMI G +HG
Sbjct: 437 VHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGH 496
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEAL F +M++ GI P GVTF+ +L+AC H G V EG F+SM YG P EHY
Sbjct: 497 GKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYA 556
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+L RAG L A EFI MP++P VWGALLG C +HKN ++A AS++L QLDP
Sbjct: 557 CMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPE 616
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+V+LSNIY+ + A VR++++ + KTPG + I +D + F +GD +HPQ
Sbjct: 617 NVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQ 676
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNT-SVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
A IF+M EKL M+ GY T + L D+E++EKE + HSEKLA+ FGL++T PG
Sbjct: 677 ATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKPG 736
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IRI+KNLRVC DCH A K IS+I R IVVRD NRFH F+ G CSCGDYW
Sbjct: 737 TEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 75/146 (51%), Gaps = 3/146 (2%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V L +Y + ++ AR++F E E+++ +W+AMI G +G A++ F +M+
Sbjct: 352 VSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP-Q 410
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
+ PN VT +L AC +G + G ++ + + + + +VD+ ++ G + EA
Sbjct: 411 LSPNPVTVTSILSACAQLGALSIG-KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEA 469
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVH 162
+ ++ + N V W A++ G +H
Sbjct: 470 RQLF-DLMVDKNVVTWNAMITGYGLH 494
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +S G N+ V + ++D+Y K E AR+VF M ER W+ MI G + +
Sbjct: 135 LHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSY 194
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM 94
++++ F M+++G+ + T +L A +
Sbjct: 195 FEDSIRVFVDMLDVGLSFDSTTLATVLTAVAEL 227
>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 624
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 173/351 (49%), Positives = 241/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y N +G+ ++ + +IDMY KCG +E AR +F M+ R V TWSAMI HGQ
Sbjct: 274 IHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQ 333
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL F M+ GI PN +TF+ LL+AC H G ++EG+RFF SM EYG+ P ++HY
Sbjct: 334 GEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYT 393
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L EA E I MP++ + V+WGALLG CR+H+++DLAE +R L +L
Sbjct: 394 CMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQ 453
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
G++V+LSNIYA A +WED+A+ R LM G++K PG + I V +++F GD+THP+
Sbjct: 454 KPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLRKIPGRTWIEVGEKLYQFGVGDKTHPR 513
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ +I++M ++L + +++ GY P+T+ VL D++E+ K+ LY HSEKLA+ FGL+ P G
Sbjct: 514 SNEIYKMLKRLGEKLEVAGYHPDTNDVLYDVDEEVKQGLLYSHSEKLAIAFGLLVLPQGH 573
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH K +S I + I+VRD RFH F+ G CSC DYW
Sbjct: 574 PIRITKNLRVCGDCHTFCKFVSLIEQKTIIVRDAKRFHHFKEGVCSCRDYW 624
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 86/169 (50%), Gaps = 2/169 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G VC TL+DMY +C +E A ++F++M +R + TW+ MI LA G
Sbjct: 173 IHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGV 232
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
E+L F++M GI P+ V + +++AC +G +++ + ++ G +
Sbjct: 233 PVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKA-IHAYINGTGYSLDVILGT 291
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
M+D+ ++ G ++ A M ++ N + W A++ H + A E
Sbjct: 292 AMIDMYAKCGSVESARWIFDRMQVR-NVITWSAMIAAYGYHGQGEKALE 339
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 78/160 (48%), Gaps = 6/160 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH +G RN+ V N L+ MYV+ G LE A+ +F M +R ++WS ++ G A G
Sbjct: 71 QVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKVG 130
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
F +++ G + + ++ AC + + G R + +T + G+ H+
Sbjct: 131 NFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCG-RLIHCITLKCGL--DYGHF 187
Query: 121 GC--MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
C +VD+ +R +++A++ M K + W ++G
Sbjct: 188 VCATLVDMYARCKVVEDAHQIFVKM-WKRDLATWTVMIGA 226
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/351 (49%), Positives = 247/351 (70%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + +++GF + + N LI+MY KCG LE ARR+F +M + V +W+ MI A+HG
Sbjct: 377 IHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGD 436
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A AL F++M + I+PNG+TF+G+L+AC H G V+EGR+ FYSM E+ I P+ HYG
Sbjct: 437 AGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYG 496
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL RA L+EA E + MP+ PN ++WG+L+ CRVH I+L E A+++L +LDP
Sbjct: 497 CMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPD 556
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G HV LSNIYA+A RWEDV +VRKLM++ G+ K G S ++ +HEF+ D +H
Sbjct: 557 HDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKH 616
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A++I++ +++ +KL GY PNT +L+D+EE+EK++ + HSEKLAL +GLM G+
Sbjct: 617 ADEIYEKLYEVVSKLKLVGYSPNTCSILVDLEEEEKKEVVLWHSEKLALCYGLMRDGTGS 676
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVCEDCH KL S++ REIVVRDR RFH ++ G CSC DYW
Sbjct: 677 CIRIIKNLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHYKDGVCSCKDYW 727
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+N+ ++ Y K G +E AR VF +M ++ + WSAMI G A +EAL FN+M
Sbjct: 287 KNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEM 346
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+GIKP+ VT + ++ AC H+G +D+ ++ + + G + ++++ ++ G
Sbjct: 347 QSLGIKPDQVTMLSVITACAHLGALDQA-KWIHLFVDKNGFGGALPINNALIEMYAKCGS 405
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVV 188
L+ A MP K N + W ++ +H + A Q++ + NG V
Sbjct: 406 LERARRIFDKMPRK-NVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFV 460
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 5/214 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + GF + V L+ MY CG + AR +F +M R V TWS MI G G
Sbjct: 144 IHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGL 203
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+AL F +M ++P+ + +L ACG G + G + + E I+
Sbjct: 204 FNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYG-KMIHDFIMENNIVVDPHLQS 262
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+V + + G + A M K N V A++ G I+ A Q+ + D +
Sbjct: 263 ALVTMYASCGSMDLALNLFEKMTPK-NLVASTAMVTGYSKLGQIENARSVFNQMVKKDLV 321
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVK 215
+ ++S YAE++ ++ + M++LG+K
Sbjct: 322 --CWSAMISG-YAESDSPQEALNLFNEMQSLGIK 352
>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
Length = 822
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 168/352 (47%), Positives = 248/352 (70%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S ++GF + V N+L+ MY +CG LE A R F E+++R V +W++MI GLA HG
Sbjct: 471 QLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHG 530
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A+ AL+ F+ MI G+KPN VT+I +L AC H+G V EG+ +F SM ++G+IP++EHY
Sbjct: 531 YAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHY 590
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL+R+G ++EA EFI MP+K + +VW LLG CR H NI++ E ++ + +L+P
Sbjct: 591 ACMVDLLARSGIVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEITAKNVVELEP 650
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +V+LSN+YA+A W++VAR+R MR+ + K G S + V+ HEF AGD +HP
Sbjct: 651 RDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHP 710
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+A+ I+ + L+ +K GY+P+TS+VL D+ ++ KE++L +HSEK+A+ FGL+ T
Sbjct: 711 RAQDIYGKLDTLVRQIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAP 770
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH+A K +S+ REI++RD NRFH + G CSCG+YW
Sbjct: 771 KPIRIFKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 109/245 (44%), Gaps = 15/245 (6%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ V + LIDM + G L AR+VF + E+TV W+ +I A+EA+ F +
Sbjct: 187 DVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFL 246
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
E G +P+ T ++ AC +G V G + +S+ G+ +VD+ +++
Sbjct: 247 EDGFEPDRYTMSSMISACTELGSVRLGLQ-LHSLALRMGLASDACVSCGLVDMYAKSNIG 305
Query: 134 QE---AYEFIRNMPIKPNGVVWGALLGG---CRVHKNIDLAEEASRQLDQLDPLNNGYHV 187
Q A + MP K + + W AL+ G V +N +A + + P H+
Sbjct: 306 QAMDYANKVFERMP-KNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKP----NHI 360
Query: 188 VLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIF- 246
S+I D R++ + V K+ S+ TV + A +A ++F
Sbjct: 361 TYSSILKSCASISDHDSGRQVHAH--VIKSNQASAHTVGNALVSMYAESGCMEEARRVFN 418
Query: 247 QMWEK 251
Q++E+
Sbjct: 419 QLYER 423
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 8/175 (4%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEE-RTVFTWSAMIQGLAIHGQAKEALTSFNK 71
R+ V N+L+ +Y +CG + AR VF M R + +W+AM LA +G + +L +
Sbjct: 82 RDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERGSLLLIGE 141
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG-CMVDLLSRA 130
M+E G+ PN T HAC + + G+ G ++D+L+R
Sbjct: 142 MLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKMGLWGTDVAVGSALIDMLARN 201
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGY 185
G L A + + I+ VVW L+ + + AEEA LD L +G+
Sbjct: 202 GDLASARKVFDGL-IEKTVVVWTLLISR---YVQGECAEEAVELF--LDFLEDGF 250
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCG---CLEGARRVFIEMEERTVFTWSAMIQGLA 57
++H + + G + V L+DMY K ++ A +VF M + V +W+A+I G
Sbjct: 275 QLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYV 334
Query: 58 IHG-QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRR 102
G Q + + F +M+ IKPN +T+ +L +C + D GR+
Sbjct: 335 QSGVQENKVMALFGEMLNESIKPNHITYSSILKSCASISDHDSGRQ 380
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 76/162 (46%), Gaps = 12/162 (7%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + +S V N L+ MY + GC+E ARRVF ++ ER++ + +
Sbjct: 380 QVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIPCITEGRDFPLD- 438
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++++ + + + TF L+ A +G + +G++ ++M+ + G
Sbjct: 439 ---------HRIVRMDVGISSSTFASLISAAASVGMLTKGQQ-LHAMSLKAGFGSDRFVS 488
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+V + SR G+L++A + + N + W +++ G H
Sbjct: 489 NSLVSMYSRCGYLEDACRSFNELKDR-NVISWTSMISGLAKH 529
>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
Length = 645
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/342 (52%), Positives = 236/342 (69%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
F N + LIDMY KCG A VF +M ++ + W+AMI GL + G K A T
Sbjct: 304 FLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIG 363
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
+M + G+K N TFIGLL +C H G + +GRR+F++MT Y I P+IEHYGC+VDLLSRA
Sbjct: 364 QMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRA 423
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190
G LQEA++ I +MP+ N V+ GALLGGC++H+N +LAE QL +L+P N+G +V+LS
Sbjct: 424 GLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLS 483
Query: 191 NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWE 250
NIY+ RWED A++R M+ GV+K P S + +G VHEF GD++HP +++I++ +
Sbjct: 484 NIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLD 543
Query: 251 KLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLR 310
+L MK GY P T VV+ D+E++EKE L HSEKLA+ F L+ T PG IR+ KNLR
Sbjct: 544 ELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLR 603
Query: 311 VCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
VC DCH A KLIS I +REI+VRD NRFHCF+ GSCSC DYW
Sbjct: 604 VCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 645
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 4/154 (2%)
Query: 6 SNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEA 65
+ Q G +++ V +D+YVKCG + AR VF +M ++ W AM+ G A +G +EA
Sbjct: 198 AEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREA 257
Query: 66 LTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMT-TEYGIIPQIEHYGCMV 124
L F M G++P+ G L AC +G +D GR+ + E+ P + ++
Sbjct: 258 LDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG--TALI 315
Query: 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
D+ ++ G EA+ + M K + +VW A++ G
Sbjct: 316 DMYAKCGSTAEAWVVFQQMR-KKDIIVWNAMILG 348
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S + N V +L+ +Y +CG L A+RVF EM + +W+A+I G
Sbjct: 92 QLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAG 151
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ G++P+ T + +L AC + + G + + E GI +
Sbjct: 152 DLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQE-GIAQSVFVA 210
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
VDL + G + +A E M K + V WGA++GG
Sbjct: 211 TAAVDLYVKCGEMAKAREVFDKMRDK-DAVAWGAMVGG 247
>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 462
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 174/353 (49%), Positives = 250/353 (70%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH Y + G RN+ N L+D+Y +CG +E A+ +F EM ++ +W+++I GLA++G
Sbjct: 110 RVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNG 169
Query: 61 QAKEALTSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
KEA+ F M G+ P +TF+G+L+AC H G V EG +F M EY I P+IEH
Sbjct: 170 FGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEH 229
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
+GCMVDLL+RAG +++AYE+I++MP++PN V+W LLG C VH + DLAE A Q+ QL+
Sbjct: 230 FGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLE 289
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P ++G +V+LSN+YA +RW DV ++RK M GVKK PG S + V VHEF+ GD++H
Sbjct: 290 PNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSH 349
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
PQ++ I+ +++ ++ +GY+P S V +D+EE+EKE + HSEK+A+ F L++TP
Sbjct: 350 PQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPE 409
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+PI ++KNLRVC DCH A KL+S++ NREIVVRDR+RFH F+ GSCSC DYW
Sbjct: 410 RSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 462
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 2/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +SGF I V N+L+ +Y CG + A +VF +M E+ + W+++I G A +G+
Sbjct: 10 IHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGK 69
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL + +M GIKP+G T + LL AC +G + G+R M + G+ +
Sbjct: 70 PEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM-IKVGLTRNLHSSN 128
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++DL +R G ++EA M + N V W +L+ G V+
Sbjct: 129 VLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVGLAVN 168
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/351 (51%), Positives = 248/351 (70%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ SG R + + + LIDMY KCG +E A VF + V TWSAMI G AIHGQ
Sbjct: 290 LHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQ 349
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A +A+ F KM + G++P+ V +I LL AC H G V+EGRR+F M + G+ P+IEHYG
Sbjct: 350 AGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYG 409
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL R G L EA EFI NMPIKP+ V+W ALLG CR+H+N+++ + + L + P
Sbjct: 410 CMVDLLGRLGLLDEAEEFILNMPIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPH 469
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +V LSN+YA W +V+ +R M+ + ++K PG S I +DGV+HEF+ D++HP+
Sbjct: 470 DSGAYVALSNMYASQGNWSEVSEMRLRMKEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPR 529
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A++I M ++ D ++L GY P T+ VLL++EE++KE L+ HSEK+A FGL++T PG
Sbjct: 530 AKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENALHYHSEKMATAFGLISTSPGK 589
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLR+CEDCH++ KLIS++ R+I VRDR RFH FQ GSCSC DYW
Sbjct: 590 PIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 640
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 79/145 (54%), Gaps = 3/145 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE-IGI 77
N +ID Y++ G + AR +F +M +R+V +W+ MI G + +G K+A+ F +M + I
Sbjct: 205 NVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDI 264
Query: 78 KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAY 137
+PN VT + +L A +G ++ G + + + GI ++D+ S+ G +++A
Sbjct: 265 RPNYVTLVSVLPAVSRLGSLELG-EWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAI 323
Query: 138 EFIRNMPIKPNGVVWGALLGGCRVH 162
+P + N + W A++ G +H
Sbjct: 324 MVFERLP-RENVITWSAMINGFAIH 347
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKE--ALTSFNKMI-EIGIKPNGVTFIGL 87
L+ A ++F +M +R F+W+ +I+G + + K A+T F +M+ + I+PN TF +
Sbjct: 68 LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSV 127
Query: 88 LHACGHMGWVDEGRRFFYSMTTEYG 112
L AC G + +G++ + + +YG
Sbjct: 128 LKACAKTGKIQQGKQ-IHGLALKYG 151
>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
Length = 574
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 240/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+Y + ++ + +IDMY KCG ++ +R +F ME++ V +WSAMI HGQ
Sbjct: 224 VHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQ 283
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL F+ M+ GI PN +TFI LL+AC H G VD+G + F M+ YG+ P ++HY
Sbjct: 284 GREALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYT 343
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L +A I NM ++ + +W A LG CR+H+ +DLAE+A++ L L
Sbjct: 344 CMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQ 403
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G++++LSNIYA A RW+DVA++R LM +KK PG++ I VD +++ F AGD +H +
Sbjct: 404 NPGHYILLSNIYANAGRWKDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLR 463
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ +I++M + L ++ GY+P+T+ VL D++E+ K L+ HSEKLA+ FGL+ TP GT
Sbjct: 464 SNEIYEMLKSLSQKLESAGYVPDTNSVLHDVDEEVKLGILHAHSEKLAIAFGLIATPDGT 523
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH+ KL+S I R+I+VRD NRFH F+ G CSCGDYW
Sbjct: 524 PIRITKNLRVCGDCHSFCKLVSAITQRDIIVRDANRFHHFKEGICSCGDYW 574
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 84/162 (51%), Gaps = 4/162 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++G + VC+TL+DMY KCG ++ A+++F M ++ + T + MI G A G+
Sbjct: 123 IHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGK 182
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHY 120
E+ F++M G P+ V + +++AC +G +++ R Y Y + +E
Sbjct: 183 PNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSL--DVELG 240
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
M+D+ ++ G + + E M K N + W A++G H
Sbjct: 241 TAMIDMYAKCGSIDSSREIFDRMEQK-NVISWSAMIGAYGYH 281
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 5/148 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH +G ++ V N L+ M K L A +F +MEER +WS MI G +G
Sbjct: 21 QVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKNG 80
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +F ++I G KP+ + ++ AC + G R +S + G+ ++++
Sbjct: 81 DYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMG-RLIHSTVLKNGL--HLDNF 137
Query: 121 GC--MVDLLSRAGFLQEAYEFIRNMPIK 146
C +VD+ ++ G + A + MP K
Sbjct: 138 VCSTLVDMYAKCGMIDNAKQLFDRMPKK 165
>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
Length = 890
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 170/352 (48%), Positives = 240/352 (68%), Gaps = 5/352 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R H Y + + F V N LIDMY KCG ++ AR VF M +++ +W++M+ G +HG
Sbjct: 544 RHHRYESSAYF-----VANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHG 598
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EAL F+KM + G P+ +TF+ +L+AC H G VD+G +F SM+ +YG+ P+ EHY
Sbjct: 599 RGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHY 658
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C +DLL+R+G L +A+ +++MP++P VVW ALL CRVH N++LAE A +L +++
Sbjct: 659 ACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNA 718
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G + ++SNIYA A RW+DVAR+R LM+ G+KK PG S + F GD +HP
Sbjct: 719 ENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHP 778
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ + E L+D +K GY+P T+ L D++E+EK L HSEKLAL +GL+ T PG
Sbjct: 779 LSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPG 838
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH+AF IS+IV+ EIVVRD +RFH F+ GSCSCG YW
Sbjct: 839 CPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 890
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 14/178 (7%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIHGQAKEALT 67
G ++ V N LIDMY KC + AR +F I +EER V TW+ MI G A +G + +AL
Sbjct: 441 GEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALK 500
Query: 68 SFNKMIE--IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY--GCM 123
F +MI G+ PN T +L AC H+ + G++ ++ + ++ C+
Sbjct: 501 LFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQ-IHAYVLRHHRYESSAYFVANCL 559
Query: 124 VDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+D+ S+ G + A +M K + + W +++ G +H S LD D +
Sbjct: 560 IDMYSKCGDVDTARHVFDSMSQK-SAISWTSMMTGYGMHG------RGSEALDIFDKM 610
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 11/176 (6%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEA 65
+GF N+ +CN L+ MY +CG LE A +F E+ +R V +W++++ A A
Sbjct: 184 NGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTA 243
Query: 66 LTSFNKM-IEIGIKPNG-----VTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
L F+KM + + KP ++ + +L ACG + V + + + G P +
Sbjct: 244 LDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKE-VHGNAIRNGTFPDVFV 302
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
++D ++ G ++ A + M K + V W A++ G N + A E + +
Sbjct: 303 GNALIDAYAKCGLMENAVKVFNMMEFK-DVVSWNAMVAGYSQSGNFEAAFELFKNM 357
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 87/202 (43%), Gaps = 45/202 (22%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVF-------------- 47
VH + ++G ++ V N LID Y KCG +E A +VF ME + V
Sbjct: 287 VHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGN 346
Query: 48 ---------------------TWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIG 86
TW+A+I G + G + EAL F +MI G PN VT I
Sbjct: 347 FEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIIS 406
Query: 87 LLHACGHMGWVDEG--------RRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGFLQEAY 137
+L AC +G +G + ++ ++G + + Y ++D+ S+ + A
Sbjct: 407 VLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAAR 466
Query: 138 EFIRNMPIKP-NGVVWGALLGG 158
++P++ N V W ++GG
Sbjct: 467 SIFDDIPLEERNVVTWTVMIGG 488
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
++ Y+ CG + A V + W+ +I+ G+ A+ +M+ G +P+
Sbjct: 95 VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPD 154
Query: 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
T +L ACG + G F+ + G + +V + SR G L+EA
Sbjct: 155 HFTLPHVLKACGELPSYRCGSA-FHGLICCNGFESNVFICNALVAMYSRCGSLEEA 209
>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Glycine max]
Length = 661
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/352 (49%), Positives = 245/352 (69%), Gaps = 8/352 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH Y + G R N V N+L+D+Y KC I ER +W+++I GLA++G
Sbjct: 252 RVHVYLLKVGLRENSHVTNSLLDLYAKCDA--------IWEXERNAVSWTSLIVGLAVNG 303
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F +M G+ P+ +TF+G+L+AC H G +DEG +F M E+GI+P+IEHY
Sbjct: 304 FGEEALELFREMEGQGLVPSEITFVGVLYACSHCGMLDEGFDYFRRMKEEFGIMPRIEHY 363
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLLSRAG +++AYE+I+NMP++PN V W LLG C +H ++ L E A L +L+P
Sbjct: 364 GCMVDLLSRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACTIHGHLGLGETARSHLLKLEP 423
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++G +V+LSN+Y RW DV +R+ M GVKKT G+S + + V+EF G+ +HP
Sbjct: 424 KHSGDYVLLSNLYTSECRWADVQLIRRSMLKDGVKKTSGYSLVELGNRVYEFTMGNRSHP 483
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q++ ++ + EK+ + +KL+GY+P+T+ VL DIEE+EKE+ L HSEK A+ F +NT PG
Sbjct: 484 QSQDVYALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKXAIAFMRLNTAPG 543
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IR+MKNLRVC DCH A KL++++ +REIV+RDR RFH F+ GSCSC DYW
Sbjct: 544 TTIRVMKNLRVCADCHMAIKLMAKVYDREIVIRDRGRFHHFRGGSCSCKDYW 595
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 88/175 (50%), Gaps = 10/175 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + ++GF + V N+L+ +Y CG E A VF M +R + ++I G A++G+
Sbjct: 152 IHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVAXISVINGFALNGR 211
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EALT F +M G++P+G T + LL A +G ++ GRR + + G+
Sbjct: 212 PSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGRRVHVYL-LKVGLRENSHVTN 270
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLD 176
++DL ++ + E + N V W +L+ G V+ + A E R+++
Sbjct: 271 SLLDLYAKCDAIWEX---------ERNAVSWTSLIVGLAVNGFGEEALELFREME 316
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 101/236 (42%), Gaps = 16/236 (6%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90
L A VF + VFTW+ M +G A AL + +MI I+P+ T+ LL A
Sbjct: 80 LSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKA 139
Query: 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA---YEFIRNMPIKP 147
V EG +S+T G + ++ + + G + A +E +R+ +
Sbjct: 140 ISKSLNVREGEA-IHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVA 198
Query: 148 N-GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVV-LSNIYAEAERWEDVARV 205
V+ G L G R + + L E S + ++P +G+ VV L + AE E RV
Sbjct: 199 XISVINGFALNG-RPSEALTLFREMSAE--GVEP--DGFTVVSLLSASAELGALELGRRV 253
Query: 206 RKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGY 261
+ +G+++ ++ +D A + + E+ W L+ G+ + G+
Sbjct: 254 HVYLLKVGLRENSHVTNSLLD-----LYAKCDAIWEXERNAVSWTSLIVGLAVNGF 304
>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
Length = 897
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 170/352 (48%), Positives = 240/352 (68%), Gaps = 5/352 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R H Y + + F V N LIDMY KCG ++ AR VF M +++ +W++M+ G +HG
Sbjct: 551 RHHRYESSAYF-----VANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHG 605
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EAL F+KM + G P+ +TF+ +L+AC H G VD+G +F SM+ +YG+ P+ EHY
Sbjct: 606 RGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHY 665
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C +DLL+R+G L +A+ +++MP++P VVW ALL CRVH N++LAE A +L +++
Sbjct: 666 ACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNA 725
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G + ++SNIYA A RW+DVAR+R LM+ G+KK PG S + F GD +HP
Sbjct: 726 ENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHP 785
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ + E L+D +K GY+P T+ L D++E+EK L HSEKLAL +GL+ T PG
Sbjct: 786 LSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPG 845
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH+AF IS+IV+ EIVVRD +RFH F+ GSCSCG YW
Sbjct: 846 CPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 897
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 14/178 (7%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIHGQAKEALT 67
G ++ V N LIDMY KC + AR +F I +EER V TW+ MI G A +G + +AL
Sbjct: 448 GEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALK 507
Query: 68 SFNKMIE--IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY--GCM 123
F +MI G+ PN T +L AC H+ + G++ ++ + ++ C+
Sbjct: 508 LFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQ-IHAYVLRHHRYESSAYFVANCL 566
Query: 124 VDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+D+ S+ G + A +M K + + W +++ G +H S LD D +
Sbjct: 567 IDMYSKCGDVDTARHVFDSMSQK-SAISWTSMMTGYGMHG------RGSEALDIFDKM 617
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 11/176 (6%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEA 65
+GF N+ +CN L+ MY +CG LE A +F E+ +R V +W++++ A A
Sbjct: 191 NGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTA 250
Query: 66 LTSFNKM-IEIGIKPNG-----VTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
L F+KM + + KP ++ + +L ACG + V + + + G P +
Sbjct: 251 LDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKE-VHGNAIRNGTFPDVFV 309
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
++D ++ G ++ A + M K + V W A++ G N + A E + +
Sbjct: 310 GNALIDAYAKCGLMENAVKVFNMMEFK-DVVSWNAMVAGYSQSGNFEAAFELFKNM 364
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 87/202 (43%), Gaps = 45/202 (22%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVF-------------- 47
VH + ++G ++ V N LID Y KCG +E A +VF ME + V
Sbjct: 294 VHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGN 353
Query: 48 ---------------------TWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIG 86
TW+A+I G + G + EAL F +MI G PN VT I
Sbjct: 354 FEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIIS 413
Query: 87 LLHACGHMGWVDEG--------RRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGFLQEAY 137
+L AC +G +G + ++ ++G + + Y ++D+ S+ + A
Sbjct: 414 VLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAAR 473
Query: 138 EFIRNMPIKP-NGVVWGALLGG 158
++P++ N V W ++GG
Sbjct: 474 SIFDDIPLEERNVVTWTVMIGG 495
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
++ Y+ CG + A V + W+ +I+ G+ A+ +M+ G +P+
Sbjct: 102 VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPD 161
Query: 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
T +L ACG + G F+ + G + +V + SR G L+EA
Sbjct: 162 HFTLPHVLKACGELPSYRCGSA-FHGLICCNGFESNVFICNALVAMYSRCGSLEEA 216
>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 630
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/352 (50%), Positives = 243/352 (69%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + N S R N++VC LIDMY KCG LE A VF + + + W+AMI G A+HG
Sbjct: 279 IHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGY 338
Query: 62 AKEALTSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+++AL F++M I G++P +TFIG L AC H G V+EG + F SM EYGI P+IEHY
Sbjct: 339 SQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHY 398
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GC+V LL RAG L+ AYE I+NM ++ + V+W ++LG C++H L +E + L +
Sbjct: 399 GCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNI 458
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G +V+LSNIYA +E VA+VR LM+ G+ K PG S+I +D VHEF AGD H
Sbjct: 459 SNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAGDREHL 518
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++++I+ M K+ + +K GY+PNT+ VL D+EE EKE+ L HSE+LA+ +GL++T PG
Sbjct: 519 KSKEIYTMLRKMSERIKSHGYVPNTNTVLHDLEETEKERSLQVHSERLAIAYGLISTKPG 578
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+P++I KNLRVC DCH KLIS+I R+IV+RDRNRFH F GSCSC D+W
Sbjct: 579 SPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFSDGSCSCDDFW 630
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 6/167 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ +I Y K G +E AR +F M ER + +W+ MI G + HG +AL F K+
Sbjct: 188 RSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKL 247
Query: 73 IEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
+ G KP+ +T + L AC +G ++ G R+ + I ++ ++D+ S+ G
Sbjct: 248 LADGKPKPDEITVVAALSACSQIGALETG-RWIHVFVNSSRIRLNVKVCTALIDMYSKCG 306
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
L+EA + P K + V W A++ G +H +++A R D++
Sbjct: 307 SLEEAVLVFNDTPRK-DIVAWNAMITGYAMH---GYSQDALRLFDEM 349
>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Brachypodium distachyon]
Length = 598
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/353 (49%), Positives = 247/353 (69%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIH 59
RVH + + G N N LID+Y KCG ++ AR++F EM RTV +W+++I GLA++
Sbjct: 246 RVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVN 305
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G +AL F+ M + P +T +G+L+AC H G VD+G R+F M EYGI P+IEH
Sbjct: 306 GFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEH 365
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
GCMVDLL RAG ++EA+ +I MP++PN VVW LLG C +HK +++ E A +L +LD
Sbjct: 366 LGCMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGACAMHKKLEIGEAAWARLVELD 425
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P ++G +V+LSN+YA RW DV +RK M GV+K PG S + + V+EFV GD +H
Sbjct: 426 PGHSGDYVLLSNLYAGVGRWADVHVLRKTMVTHGVRKNPGHSLVELRNSVYEFVMGDRSH 485
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ ++I++M + + ++ +GYIP+TS VL DIE++EKE L HSE+LA+ F L+ + P
Sbjct: 486 PETDQIYEMLGDIAERLRRQGYIPHTSNVLADIEDEEKESALNYHSERLAIAFALLKSLP 545
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GTPIRI+KNLRVC DCH A KLIS++ +REI+VRDR+RFH F+ G+CSC DYW
Sbjct: 546 GTPIRIVKNLRVCGDCHMAIKLISKVYDREIIVRDRSRFHHFKGGACSCKDYW 598
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME--ERTVFTWSAMIQGLAIH 59
+H + ++G + V N+L+ +Y CG E A RVF E+ ER + +W++++ G A +
Sbjct: 144 LHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNGFAAN 203
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G+ E LT F +M+E+ P+G T + +L AC +G + GRR + + G++
Sbjct: 204 GRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRR-VHVFVAKVGLVGNAHA 262
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRV 161
++DL ++ G + +A + M + V W +L+ G V
Sbjct: 263 GNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAV 304
>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
Length = 497
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/352 (48%), Positives = 240/352 (68%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G++ N +CN LI MY +CG +E A +VF EME+R V +W++MI G A HG
Sbjct: 146 QIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHG 205
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A AL F+KM+E G KPN +T++ +L AC H+G + EG++ F SM E+GI+P++EHY
Sbjct: 206 FATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHY 265
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL R+G L EA EFI +MP+ + +VW LLG CRVH N +L A+ + + +P
Sbjct: 266 ACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEP 325
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +++LSN++A A +W+DV ++RK M+ + K G S I V+ VH F G+ +HP
Sbjct: 326 DDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHP 385
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
QA +I+Q ++L +K GYIP+T VL DIEE++KE+FL++HSEK+A+ FGL++T
Sbjct: 386 QAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQS 445
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH A K IS REIVVRD NRFH + G CSC DYW
Sbjct: 446 KPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 497
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 75/146 (51%), Gaps = 2/146 (1%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V N+LI MY + G +E AR+ F + E+ + +++A++ G A + +++EA FN++ + G
Sbjct: 61 VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTG 120
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
I + TF LL +G + +G + + + G ++ + SR G ++ A
Sbjct: 121 IGISAFTFASLLSGAASIGAMGKGEQ-IHGRLLKGGYKSNQCICNALISMYSRCGNIEAA 179
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVH 162
++ M + N + W +++ G H
Sbjct: 180 FQVFNEMEDR-NVISWTSMITGFAKH 204
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 103/251 (41%), Gaps = 36/251 (14%)
Query: 24 MYVKC---GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA-KEALTSFNKMIEIGIKP 79
MY KC G ++ +R+VF +M E V +W+A+I G+ KEA+ F KMI +
Sbjct: 1 MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVNC 60
Query: 80 NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEF 139
G + I + G M E R + + E ++ Y +VD ++ +EA+
Sbjct: 61 VGNSLISMYARSGRM----EDARKAFDILFEKNLVS----YNAIVDGYAKNLKSEEAFLL 112
Query: 140 ---IRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGY---HVVLSNIY 193
I + I + + +LL G + E+ +L L GY + + +
Sbjct: 113 FNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL-----LKGGYKSNQCICNALI 167
Query: 194 AEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLL 253
+ R ++ ++ + + W+S+ + G H A + +M+ K+L
Sbjct: 168 SMYSRCGNIEAAFQVFNEMEDRNVISWTSM---------ITGFAKHGFATRALEMFHKML 218
Query: 254 DGMKLKGYIPN 264
+ G PN
Sbjct: 219 E----TGTKPN 225
>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 816
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/351 (49%), Positives = 238/351 (67%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + ++ +N+ VC LID + KCG ++ AR++F M+ER V TW+AMI G +G
Sbjct: 467 IHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGH 526
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL FN+M +KPN +TF+ ++ AC H G V+EG +F SM YG+ P ++HYG
Sbjct: 527 GREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYG 586
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
MVDLL RAG L +A++FI++MP+KP V GA+LG CR+HKN++L E+ + +L LDP
Sbjct: 587 AMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPD 646
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ GYHV+L+N+YA A W+ VARVR M G++KTPG S + + VH F +G HPQ
Sbjct: 647 DGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQ 706
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I+ E L D MK GY+P+T+ + D+EE KE+ L HSE+LA+ FGL+NT GT
Sbjct: 707 SKRIYAYLETLGDEMKAAGYVPDTNSI-HDVEEDVKEQLLSSHSERLAIAFGLLNTRHGT 765
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I I KNLRVC DCH A K IS + REI+VRD RFH F+ G CSCGDYW
Sbjct: 766 AIHIRKNLRVCGDCHEATKYISLVTGREIIVRDLRRFHHFKNGICSCGDYW 816
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ ++GF + V ++D Y KCG + AR VF M R V +W+ MI G A +G+
Sbjct: 265 IHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGE 324
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++EA +F KM++ G++P V+ +G LHAC ++G ++ G R+ + + E I +
Sbjct: 325 SEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERG-RYVHRLLDEKKIGFDVSVMN 383
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + S+ + A N+ K V W A++ G
Sbjct: 384 SLISMYSKCKRVDIAASVFGNLKHK-TVVTWNAMILG 419
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 95/215 (44%), Gaps = 4/215 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +GF+ N+ ++++Y KC +E A ++F M +R + +W+ ++ G A +G
Sbjct: 164 IHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGF 223
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+ A+ +M E G KP+ +T + +L A + + GR + G +
Sbjct: 224 ARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRS-IHGYAFRAGFEYMVNVAT 282
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
M+D + G ++ A + M + N V W ++ G +N + E + L LD
Sbjct: 283 AMLDTYFKCGSVRSARLVFKGMSSR-NVVSWNTMIDG--YAQNGESEEAFATFLKMLDEG 339
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKK 216
+V + D+ R R + R L KK
Sbjct: 340 VEPTNVSMMGALHACANLGDLERGRYVHRLLDEKK 374
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 2/151 (1%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
++GF LI ++ K + A RVF +E + + M++G A + ++A+
Sbjct: 69 KNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVR 128
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
+ +M + P F LL G + GR + M G + +V+L
Sbjct: 129 FYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGRE-IHGMVITNGFQSNLFAMTAVVNLY 187
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ +++AY+ MP + + V W ++ G
Sbjct: 188 AKCRQIEDAYKMFERMP-QRDLVSWNTVVAG 217
>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
Length = 734
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/351 (50%), Positives = 235/351 (66%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H YS + +++ V LIDMY KCG + AR +F ER V TW+AMI G HG
Sbjct: 385 IHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGF 444
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K A+ F +M IGI PN TF+ +L AC H G VDEGR +F SM +YG+ P +EHYG
Sbjct: 445 GKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYG 504
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
MVDLL RAG L EA+ FI+ MP+ P V+GA+LG C++HKN++LAEE+++++ +L P
Sbjct: 505 TMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQ 564
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
YHV+L+NIYA A W+DVARVR M G++KTPGWS I + +H F +G H Q
Sbjct: 565 EGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQ 624
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A++I+ KL++ +K GY+P+T + D+E+ K + L HSEKLA+ FGL+ T PGT
Sbjct: 625 AKEIYSRLAKLIEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGT 683
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I+I KNLRVC DCH A KLIS + REI++RD RFH F+ G CSCGDYW
Sbjct: 684 TIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 80/158 (50%), Gaps = 2/158 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H ++ +SG + V ++D Y KCG + AR VF M + +W+AMI G A +G
Sbjct: 183 AHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGD 242
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++EAL FN+M+E G+ V+ + L ACG +G +DEG R + + G+ +
Sbjct: 243 SREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMR-VHELLVRIGLDSNVSVMN 301
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
++ + S+ + A + + V W A++ GC
Sbjct: 302 ALITMYSKCKRVDLASHVFDELD-RRTQVSWNAMILGC 338
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 81/162 (50%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVHE + G N+ V N LI MY KC ++ A VF E++ RT +W+AMI G A +G
Sbjct: 283 RVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNG 342
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+++A+ F +M +KP+ T + ++ A + + R+ + + + +
Sbjct: 343 CSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQA-RWIHGYSIRLHLDQDVYVL 401
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++ G + A + N + + + W A++ G H
Sbjct: 402 TALIDMYAKCGRVNIA-RILFNSARERHVITWNAMIHGYGSH 442
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 3/158 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH G L +MY KC ARRVF M R W+A++ G A +G
Sbjct: 81 VHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGL 140
Query: 62 AKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A+ A+ +M E G +P+ +T + +L AC + + R ++ G+ +
Sbjct: 141 ARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACRE-AHAFAIRSGLEELVNVA 199
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D + G ++ A MP K N V W A++ G
Sbjct: 200 TAILDAYCKCGDIRAARVVFDWMPTK-NSVSWNAMIDG 236
>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 734
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/351 (50%), Positives = 235/351 (66%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H YS + +++ V LIDMY KCG + AR +F ER V TW+AMI G HG
Sbjct: 385 IHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGF 444
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K A+ F +M IGI PN TF+ +L AC H G VDEGR +F SM +YG+ P +EHYG
Sbjct: 445 GKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYG 504
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
MVDLL RAG L EA+ FI+ MP+ P V+GA+LG C++HKN++LAEE+++++ +L P
Sbjct: 505 TMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQ 564
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
YHV+L+NIYA A W+DVARVR M G++KTPGWS I + +H F +G H Q
Sbjct: 565 EGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQ 624
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A++I+ KL++ +K GY+P+T + D+E+ K + L HSEKLA+ FGL+ T PGT
Sbjct: 625 AKEIYSRLAKLIEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGT 683
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I+I KNLRVC DCH A KLIS + REI++RD RFH F+ G CSCGDYW
Sbjct: 684 TIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 80/158 (50%), Gaps = 2/158 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H ++ +SG + V ++D Y KCG + AR VF M + +W+AMI G A +G
Sbjct: 183 AHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGD 242
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++EAL FN+M+E G+ V+ + L ACG +G +DEG R + + G+ +
Sbjct: 243 SREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMR-VHELLVRIGLDSNVSVMN 301
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
++ + S+ + A + + V W A++ GC
Sbjct: 302 ALITMYSKCKRVDLASHVFDELD-RRTQVSWNAMILGC 338
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 81/162 (50%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVHE + G N+ V N LI MY KC ++ A VF E++ RT +W+AMI G A +G
Sbjct: 283 RVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNG 342
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+++A+ F +M +KP+ T + ++ A + + R+ + + + +
Sbjct: 343 CSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQA-RWIHGYSIRLHLDQDVYVL 401
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++ G + A + N + + + W A++ G H
Sbjct: 402 TALIDMYAKCGRVNIA-RILFNSARERHVITWNAMIHGYGSH 442
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 3/158 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH G L +MY KC ARRVF M R W+A++ G A +G
Sbjct: 81 VHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGL 140
Query: 62 AKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A+ A+ +M E G +P+ +T + +L AC + + R ++ G+ +
Sbjct: 141 ARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACRE-AHAFAIRSGLEELVNVA 199
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D + G ++ A MP K N V W A++ G
Sbjct: 200 TAILDAYCKCGDIRAARVVFDWMPTK-NSVSWNAMIDG 236
>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 629
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/352 (48%), Positives = 240/352 (68%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G++ N +CN LI MY +CG +E A +VF EME+R V +W++MI G A HG
Sbjct: 278 QIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHG 337
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A AL F+KM+E G KPN +T++ +L AC H+G + EG++ F SM E+GI+P++EHY
Sbjct: 338 FATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHY 397
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL R+G L EA EFI +MP+ + +VW LLG CRVH N +L A+ + + +P
Sbjct: 398 ACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEP 457
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +++LSN++A A +W+DV ++RK M+ + K G S I V+ VH F G+ +HP
Sbjct: 458 DDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHP 517
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
QA +I+Q ++L +K GYIP+T VL DIEE++KE+FL++HSEK+A+ FGL++T
Sbjct: 518 QAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQS 577
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH A K IS REIVVRD NRFH + G CSC DYW
Sbjct: 578 KPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 629
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 87/162 (53%), Gaps = 6/162 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKC---GCLEGARRVFIEMEERTVFTWSAMIQGLA 57
++H + G ++ V +L+DMY KC G ++ +R+VF +M E V +W+A+I A
Sbjct: 72 QLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYA 131
Query: 58 IHGQA-KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ 116
G+ KEA+ F KMI I+PN +F +L ACG++ G + YS + GI
Sbjct: 132 QSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQ-VYSYAVKLGIASV 190
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + +R+G +++A + ++ + N V + A++ G
Sbjct: 191 NCVGNSLISMYARSGRMEDARKAF-DILFEKNLVSYNAIVDG 231
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+V+ Y+ + G V N+LI MY + G +E AR+ F + E+ + +++A++ G A +
Sbjct: 177 QVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNL 236
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+++EA FN++ + GI + TF LL +G + +G + + + G
Sbjct: 237 KSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQ-IHGRLLKGGYKSNQCIC 295
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++ + SR G ++ A++ M + N + W +++ G H
Sbjct: 296 NALISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITGFAKH 336
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH 93
A +VF +M ER + TW+ MI A G A++A+ F M G P+ T+ +L AC
Sbjct: 4 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63
Query: 94 MGWVDEGRRFFYSMTTEYGIIPQIEHYGC-MVDLLSRA---GFLQEAYEFIRNMPIKPNG 149
+G + G++ +S G+ + GC +VD+ ++ G + ++ + MP + N
Sbjct: 64 LGLLALGKQ-LHSRVIRLGLALDV-CVGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNV 120
Query: 150 VVWGALL 156
+ W A++
Sbjct: 121 MSWTAII 127
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/353 (49%), Positives = 247/353 (69%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQS--GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
+H Y ++ G + +LIDMY KCG +E A +VF M R++ +W+AMI G A+H
Sbjct: 323 IHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMH 382
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G+A A F++M ++P+ +TF+GLL AC H G +D GR+ F SMT +Y + P++EH
Sbjct: 383 GRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEH 442
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YGCM+DLL +G +EA E I MP++P+GV+W +LL C+ H N++LAE +++L +++
Sbjct: 443 YGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIE 502
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N+G +V+LSNIYA A RWEDVARVR ++ G+KK PG SSI VD VVHEF+ GD+ H
Sbjct: 503 PENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLH 562
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ +I+ M E++ ++ G+ P+TS VL ++EE+ KE L HSEKLA+ FGL++T P
Sbjct: 563 PRRREIYHMLEEMDVQLEEAGFAPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKP 622
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GT + I+KNLRVC +CH A KLIS+I REIV RDR RFH F+ G CSC DYW
Sbjct: 623 GTKLTIVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 675
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 5/156 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ C LI Y G AR+VF E+ ER V +W+AMI G +G+ +EAL F +M
Sbjct: 128 RDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEM 187
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRR---FFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+ ++P+ T + ++ AC G ++ GR+ + ++G ++ ++DL S+
Sbjct: 188 MRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSK 247
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNI 165
G ++ A+ + K + V W L+GG H N+
Sbjct: 248 CGDVETAFGLFEGLSCK-DVVSWNTLIGG-YTHTNL 281
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 2/160 (1%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF ++++ N LID+Y KCG +E A +F + + V +W+ +I G KEAL F
Sbjct: 230 GFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLF 289
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY-GIIPQIEHYGCMVDLLS 128
+M+ G PN VT + +L AC H+G +D GR + + G+ + ++D+ +
Sbjct: 290 QEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYA 349
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
+ G ++ A++ +M + W A++ G +H + A
Sbjct: 350 KCGDIEAAHQVFNSMLYRSLS-SWNAMIFGFAMHGRANAA 388
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 85/186 (45%), Gaps = 5/186 (2%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH 93
A VF ++E + W+ M++G A AL + +M+ +G PN +F LL +C
Sbjct: 17 AISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAK 76
Query: 94 MGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWG 153
+EGR+ ++ + G + ++ + +R G L++A + + + + V
Sbjct: 77 SKAFEEGRQ-IHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARK-VFDASSHRDVVSCT 134
Query: 154 ALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213
AL+ G + A + ++ + D ++ ++ +++ Y E R+E+ + K M
Sbjct: 135 ALITGYASRGDFRSARKVFDEITERDVVS--WNAMITG-YVENGRYEEALELFKEMMRTN 191
Query: 214 VKKTPG 219
V+ G
Sbjct: 192 VRPDEG 197
>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
Length = 631
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/352 (50%), Positives = 245/352 (69%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y ++GF + + +LI+MY KCGC+E A VF ++++ V W+A+I GL IHG
Sbjct: 280 IHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGM 339
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A AL F +M + G+KPN + FIG+L+AC H G VD+GR++F M EY I P +EHYG
Sbjct: 340 ANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYG 399
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VD+L RAG L+EA I NMPI PN V+W +LLGG R H ID+ E A++++ ++ P
Sbjct: 400 CLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPE 459
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
G +++LSN+YA + WE V+ VR++M G +K PG SS+ G +HEF+ GD +HPQ
Sbjct: 460 TIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQ 519
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIE-EKEKEKFLYRHSEKLALTFGLMNTPPG 300
++I+ ++ + +K G++P+T+ VLL IE EKEKE L HSE+LA+ FGL+N PG
Sbjct: 520 TKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLINVKPG 579
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRIMKNLRVC DCH+ KL+S+I +REI+VRD RFH F+ GSCSC DYW
Sbjct: 580 IPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 631
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 75/149 (50%), Gaps = 2/149 (1%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N+ N +I+ Y+K G + A +F +M + TW+ MI G ++GQ +A+ F M+
Sbjct: 191 NLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMML 250
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
++G +P+ T + +L A + + +G R+ +S + G ++++ ++ G +
Sbjct: 251 KLGSRPSHATLVSVLSAVSGLAVLGKG-RWIHSYMEKNGFELDGILGTSLIEMYAKCGCI 309
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ A R + K G W A++ G +H
Sbjct: 310 ESALTVFRAIQKKKVG-HWTAIIVGLGIH 337
>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/352 (48%), Positives = 240/352 (68%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G++ N +CN LI MY +CG +E A +VF EME+R V +W++MI G A HG
Sbjct: 283 QIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHG 342
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A AL F+KM+E G KPN +T++ +L AC H+G + EG++ F SM E+GI+P++EHY
Sbjct: 343 FATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHY 402
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL R+G L EA EFI +MP+ + +VW LLG CRVH N +L A+ + + +P
Sbjct: 403 ACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEP 462
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +++LSN++A A +W+DV ++RK M+ + K G S I V+ VH F G+ +HP
Sbjct: 463 DDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHP 522
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
QA +I+Q ++L +K GYIP+T VL DIEE++KE+FL++HSEK+A+ FGL++T
Sbjct: 523 QAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQS 582
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH A K IS REIVVRD NRFH + G CSC DYW
Sbjct: 583 KPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 634
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 87/162 (53%), Gaps = 6/162 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKC---GCLEGARRVFIEMEERTVFTWSAMIQGLA 57
++H + G ++ V +L+DMY KC G ++ +R+VF +M E V +W+A+I A
Sbjct: 77 QLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYA 136
Query: 58 IHGQA-KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ 116
G+ KEA+ F KMI I+PN +F +L ACG++ G + YS + GI
Sbjct: 137 QSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQ-VYSYAVKLGIASV 195
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + +R+G +++A + ++ + N V + A++ G
Sbjct: 196 NCVGNSLISMYARSGRMEDARKAF-DILFEKNLVSYNAIVDG 236
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+V+ Y+ + G V N+LI MY + G +E AR+ F + E+ + +++A++ G A +
Sbjct: 182 QVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNL 241
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+++EA FN++ + GI + TF LL +G + +G + + + G
Sbjct: 242 KSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQ-IHGRLLKGGYKSNQCIC 300
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++ + SR G ++ A++ M + N + W +++ G H
Sbjct: 301 NALISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITGFAKH 341
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH 93
A +VF +M ER + TW+ MI A G A++A+ F M G P+ T+ +L AC
Sbjct: 9 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68
Query: 94 MGWVDEGRRFFYSMTTEYGIIPQIEHYGC-MVDLLSRA---GFLQEAYEFIRNMPIKPNG 149
+G + G++ +S G+ + GC +VD+ ++ G + ++ + MP + N
Sbjct: 69 LGLLALGKQ-LHSRVIRLGLALDV-CVGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNV 125
Query: 150 VVWGALL 156
+ W A++
Sbjct: 126 MSWTAII 132
>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 809
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/352 (48%), Positives = 240/352 (68%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G++ N +CN LI MY +CG +E A +VF EME+R V +W++MI G A HG
Sbjct: 458 QIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHG 517
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A AL F+KM+E G KPN +T++ +L AC H+G + EG++ F SM E+GI+P++EHY
Sbjct: 518 FATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHY 577
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL R+G L EA EFI +MP+ + +VW LLG CRVH N +L A+ + + +P
Sbjct: 578 ACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEP 637
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +++LSN++A A +W+DV ++RK M+ + K G S I V+ VH F G+ +HP
Sbjct: 638 DDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHP 697
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
QA +I+Q ++L +K GYIP+T VL DIEE++KE+FL++HSEK+A+ FGL++T
Sbjct: 698 QAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQS 757
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH A K IS REIVVRD NRFH + G CSC DYW
Sbjct: 758 KPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 809
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 9/160 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM-EERTVFTWSAMIQGLAIHG 60
VH QSG + V NTLI +Y KCG E AR +F M +R + +WSAM+ A +
Sbjct: 48 VHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNS 107
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHAC--GHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+A+ +F M+E+G PN F ++ AC + WV E Y + G +
Sbjct: 108 MEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGE---IIYGFVVKTGYLEADV 164
Query: 119 HYGC-MVDLLSR-AGFLQEAYEFIRNMPIKPNGVVWGALL 156
GC ++D+ + +G L AY+ MP + N V W ++
Sbjct: 165 CVGCELIDMFVKGSGDLGSAYKVFDKMP-ERNLVTWTLMI 203
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 86/162 (53%), Gaps = 6/162 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKC---GCLEGARRVFIEMEERTVFTWSAMIQGLA 57
++H + G ++ V +L+DMY KC G ++ +R+VF +M E V +W+A+I
Sbjct: 252 QLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYV 311
Query: 58 IHGQA-KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ 116
G+ KEA+ F KMI I+PN +F +L ACG++ G + YS + GI
Sbjct: 312 QSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQ-VYSYAVKLGIASV 370
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + +R+G +++A + ++ + N V + A++ G
Sbjct: 371 NCVGNSLISMYARSGRMEDARKAF-DILFEKNLVSYNAIVDG 411
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+V+ Y+ + G V N+LI MY + G +E AR+ F + E+ + +++A++ G A +
Sbjct: 357 QVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNL 416
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+++EA FN++ + GI + TF LL +G + +G + + + G
Sbjct: 417 KSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQ-IHGRLLKGGYKSNQCIC 475
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++ + SR G ++ A++ M + N + W +++ G H
Sbjct: 476 NALISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITGFAKH 516
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Query: 21 LIDMYVK-CGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP 79
LIDM+VK G L A +VF +M ER + TW+ MI A G A++A+ F M G P
Sbjct: 170 LIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVP 229
Query: 80 NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA---GFLQEA 136
+ T+ +L AC +G + G++ +S G+ + +VD+ ++ G + ++
Sbjct: 230 DRFTYSSVLSACTELGLLALGKQ-LHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDS 288
Query: 137 YEFIRNMPIKPNGVVWGALL 156
+ MP + N + W A++
Sbjct: 289 RKVFEQMP-EHNVMSWTAII 307
>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/352 (48%), Positives = 240/352 (68%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G++ N +CN LI MY +CG +E A +VF EME+R V +W++MI G A HG
Sbjct: 476 QIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHG 535
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A AL F+KM+E G KPN +T++ +L AC H+G + EG++ F SM E+GI+P++EHY
Sbjct: 536 FATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHY 595
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL R+G L EA EFI +MP+ + +VW LLG CRVH N +L A+ + + +P
Sbjct: 596 ACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEP 655
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +++LSN++A A +W+DV ++RK M+ + K G S I V+ VH F G+ +HP
Sbjct: 656 DDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHP 715
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
QA +I+Q ++L +K GYIP+T VL DIEE++KE+FL++HSEK+A+ FGL++T
Sbjct: 716 QAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQS 775
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH A K IS REIVVRD NRFH + G CSC DYW
Sbjct: 776 KPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 827
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 9/160 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM-EERTVFTWSAMIQGLAIHG 60
VH QSG + V NTLI +Y KCG E AR +F M +R + +WSAM+ A +
Sbjct: 66 VHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNS 125
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHAC--GHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+A+ +F M+E+G PN F ++ AC + WV E Y + G +
Sbjct: 126 MEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGE---IIYGFVVKTGYLEADV 182
Query: 119 HYGC-MVDLLSR-AGFLQEAYEFIRNMPIKPNGVVWGALL 156
GC ++D+ + +G L AY+ MP + N V W ++
Sbjct: 183 CVGCELIDMFVKGSGDLGSAYKVFDKMP-ERNLVTWTLMI 221
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 86/162 (53%), Gaps = 6/162 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKC---GCLEGARRVFIEMEERTVFTWSAMIQGLA 57
++H + G ++ V +L+DMY KC G ++ +R+VF +M E V +W+A+I
Sbjct: 270 QLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYV 329
Query: 58 IHGQA-KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ 116
G+ KEA+ F KMI I+PN +F +L ACG++ G + YS + GI
Sbjct: 330 QSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQ-VYSYAVKLGIASV 388
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + +R+G +++A + ++ + N V + A++ G
Sbjct: 389 NCVGNSLISMYARSGRMEDARKAF-DILFEKNLVSYNAIVDG 429
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+V+ Y+ + G V N+LI MY + G +E AR+ F + E+ + +++A++ G A +
Sbjct: 375 QVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNL 434
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+++EA FN++ + GI + TF LL +G + +G + + + G
Sbjct: 435 KSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQ-IHGRLLKGGYKSNQCIC 493
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++ + SR G ++ A++ M + N + W +++ G H
Sbjct: 494 NALISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITGFAKH 534
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Query: 21 LIDMYVK-CGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP 79
LIDM+VK G L A +VF +M ER + TW+ MI A G A++A+ F M G P
Sbjct: 188 LIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVP 247
Query: 80 NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA---GFLQEA 136
+ T+ +L AC +G + G++ +S G+ + +VD+ ++ G + ++
Sbjct: 248 DRFTYSSVLSACTELGLLALGKQ-LHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDS 306
Query: 137 YEFIRNMPIKPNGVVWGALL 156
+ MP + N + W A++
Sbjct: 307 RKVFEQMP-EHNVMSWTAII 325
>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/343 (51%), Positives = 239/343 (69%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y ++G N+ + TLIDMY+KCGC+E A VF M E+ + TW+A+I GLA++G
Sbjct: 530 VHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGL 589
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ +L F+ M + + PN +TF+G+L AC HMG VDEG+ FYSM ++ I P ++HYG
Sbjct: 590 VESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYG 649
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG LQEA E + MP+ P+ WGALLG C+ H + ++ R+L +L P
Sbjct: 650 CMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPD 709
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G+HV+LSNIYA +W+DV +R +M V K PG S I +GV+HEF+AGD+THP
Sbjct: 710 HDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPD 769
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ I M ++ +KL+GY P+ + VLLD++E+EKE L+RHSEKLA+ FGL+N P T
Sbjct: 770 MDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPT 829
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAG 344
PIRIMKNLR+C DCH A KLIS+ R+IVVRDR+RFH F+ G
Sbjct: 830 PIRIMKNLRICNDCHTAAKLISKAFCRKIVVRDRHRFHHFEQG 872
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 72/140 (51%), Gaps = 2/140 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N++I Y+KC ++ A+ +F M E+ V +WS+MI G A + E L F +M G K
Sbjct: 446 NSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFK 505
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ T + ++ AC + +++G ++ ++ G+ + ++D+ + G ++ A E
Sbjct: 506 PDETTLVSVISACARLAALEQG-KWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALE 564
Query: 139 FIRNMPIKPNGVVWGALLGG 158
M I+ W AL+ G
Sbjct: 565 VFYGM-IEKGISTWNALILG 583
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 97/203 (47%), Gaps = 5/203 (2%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R+I N++I ++ G + A ++F EM E+ + TWSA+I + +EA+ +F M
Sbjct: 308 RSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGM 367
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+IG+ + V + L AC ++ V+ G + +S++ + G I ++ + S+ G
Sbjct: 368 HKIGVMVDEVVAVSALSACANLLVVNMG-KLIHSLSLKIGTESYINLQNALIYMYSKCGD 426
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNI 192
+ A + + + + W +++ G + +L + A D + + + +
Sbjct: 427 IMVARKLFDEAYLL-DLISWNSMISG---YLKCNLVDNAKAIFDSMPEKDVVSWSSMISG 482
Query: 193 YAEAERWEDVARVRKLMRNLGVK 215
YA+ + +++ + + M+ G K
Sbjct: 483 YAQNDLFDETLALFQEMQMSGFK 505
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + GF ++ V NTLI+ + C + A RVF E +W++++ G G
Sbjct: 234 QVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIG 293
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM 107
+EA +++M E I + + G G V E + F M
Sbjct: 294 NVEEAKHIYHQMPERSIIASNSMIVLF----GMRGLVVEACKLFDEM 336
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/352 (50%), Positives = 245/352 (69%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y ++GF + + +LI+MY KCGC+E A VF ++++ V W+A+I GL IHG
Sbjct: 328 IHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGM 387
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A AL F +M + G+KPN + FIG+L+AC H G VD+GR++F M EY I P +EHYG
Sbjct: 388 ANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYG 447
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VD+L RAG L+EA I NMPI PN V+W +LLGG R H ID+ E A++++ ++ P
Sbjct: 448 CLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPE 507
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
G +++LSN+YA + WE V+ VR++M G +K PG SS+ G +HEF+ GD +HPQ
Sbjct: 508 TIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQ 567
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIE-EKEKEKFLYRHSEKLALTFGLMNTPPG 300
++I+ ++ + +K G++P+T+ VLL IE EKEKE L HSE+LA+ FGL+N PG
Sbjct: 568 TKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLINVKPG 627
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRIMKNLRVC DCH+ KL+S+I +REI+VRD RFH F+ GSCSC DYW
Sbjct: 628 IPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 679
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 10/158 (6%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + GF ++ V +L++MY KCG ++ AR+VF M ++ V W+++I G A G
Sbjct: 133 QIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCG 192
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ AL F +M E + ++ L+ G V+ R+ F M + +
Sbjct: 193 EIDIALQLFEEMPE----RDAFSWTVLVDGLSKCGKVESARKLFDQMPCR-----NLVSW 243
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
M++ ++G A E MPI + V W ++ G
Sbjct: 244 NAMINGYMKSGDFDSALELFYQMPIW-DLVTWNLMIAG 280
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 76/150 (50%), Gaps = 2/150 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ N +I+ Y+K G + A +F +M + TW+ MI G ++GQ +A+ F M
Sbjct: 238 RNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMM 297
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+++G +P+ T + +L A + + +G R+ +S + G ++++ ++ G
Sbjct: 298 LKLGSRPSHATLVSVLSAVSGLAVLGKG-RWIHSYMEKNGFELDGILGTSLIEMYAKCGC 356
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++ A R + K G W A++ G +H
Sbjct: 357 IESALTVFRAIQKKKVG-HWTAIIVGLGIH 385
>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
Length = 1161
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/352 (48%), Positives = 233/352 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH + + ++RV LI MY KCG LE A+ VF E+ V TW+AMI A HG
Sbjct: 810 RVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHG 869
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A +AL FN M + GIKP+G TF +L AC H G V EG R F S+ +++G+ P IEHY
Sbjct: 870 LASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHY 929
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GC+V LL RAG QEA I MP P+ VW LLG CR+H N+ LAE A+ +L+
Sbjct: 930 GCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNA 989
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N +V+LSN+YA A RW+DVA++R++M G++K PG S I VD ++HEF+A D +HP
Sbjct: 990 RNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHP 1049
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I++ ++L M+ GY P+T VL +++++ +E L HSE+LA+ +GL+ TPPG
Sbjct: 1050 ETAEIYEELKRLSLEMERAGYSPDTQYVLHNLDKEHQETSLCTHSERLAIAYGLLKTPPG 1109
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPIRI KNLR+C DCH A K IS++V REI+ RD NRFH F+ G CSC D+W
Sbjct: 1110 TPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHTFKNGKCSCEDFW 1161
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+HE +SG + N + N L++MY +CG + A+ VF R + +W++MI G A HG
Sbjct: 508 IHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGS 567
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ A F +M + G++P+ +TF +L C + ++ GR+ + + E G+ +
Sbjct: 568 YEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQ-IHMLIIESGLQLDVNLGN 626
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++++ R G LQ+AYE ++ + N + W A++GG
Sbjct: 627 ALINMYIRCGSLQDAYEVFHSLRHR-NVMSWTAMIGG 662
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H+ + G +IRV L M+V+CG + GA++ +R V ++A+I LA HG
Sbjct: 305 RIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHG 364
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA + +M G+ N T++ +L+AC + G +S +E G ++
Sbjct: 365 HYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAG-ELIHSHISEVGHSSDVQIG 423
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + +R G L A E MP K + + W A++ G
Sbjct: 424 NSLISMYARCGDLPRARELFNTMP-KRDLISWNAIIAG 460
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 85/159 (53%), Gaps = 4/159 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SG + ++ + N LI+MY++CG L+ A VF + R V +W+AMI G A G
Sbjct: 608 QIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQG 667
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEH 119
+ ++A F +M G KP TF +L AC +DEG++ + + + Y + + +
Sbjct: 668 EDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGN 727
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ S++G + +A + MP + + + W ++ G
Sbjct: 728 --ALISAYSKSGSMTDARKVFDKMPNR-DIMSWNKMIAG 763
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 2/154 (1%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
SG+ + V N LI Y K G + AR+VF +M R + +W+ MI G A +G AL
Sbjct: 717 SGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQF 776
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
+M E G+ N +F+ +L+AC ++EG+R ++ + + + ++ + +
Sbjct: 777 AYQMQEQGVVLNKFSFVSILNACSSFSALEEGKR-VHAEIVKRKMQGDVRVGAALISMYA 835
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ G L+EA E N K N V W A++ H
Sbjct: 836 KCGSLEEAQEVFDNFTEK-NVVTWNAMINAYAQH 868
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 8/170 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + ++ G ++++ N+LI MY +CG L AR +F M +R + +W+A+I G A
Sbjct: 407 IHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARRED 466
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ + +M G+KP VTF+ LL AC + +G + + GI
Sbjct: 467 RGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDG-KMIHEDILRSGIKSNGHLAN 525
Query: 122 CMVDLLSRAGFLQEA---YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++++ R G + EA +E R I + W +++ G H + + A
Sbjct: 526 ALMNMYRRCGSIMEAQNVFEGTRARDI----ISWNSMIAGHAQHGSYEAA 571
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 2/175 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++G++R+ RV N+L++MY KC L AR+VF + R V +++ M+ A
Sbjct: 204 KIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKA 263
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+E + F +M GI P+ VT+I LL A +DEG+R + + G+ I
Sbjct: 264 YVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKR-IHKLAVNEGLNSDIRVG 322
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
+ + R G + A + + + + VV+ AL+ H + + A E Q+
Sbjct: 323 TALATMFVRCGDVAGAKQALEAFADR-DVVVYNALIAALAQHGHYEEAFEQYYQM 376
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 58/103 (56%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H ++G +I + N LI+MYVKC + A +VF++M R V +W+++I A G
Sbjct: 103 RIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQG 162
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF 103
K+A F +M G P+ +T+I +L AC ++ G++
Sbjct: 163 FKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKI 205
>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
Length = 645
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/342 (51%), Positives = 235/342 (68%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
F N + LIDMY KCG A VF +M ++ + W+AMI GL + G K A
Sbjct: 304 FLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVG 363
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
+M + G+K N TFIGLL +C H G + +GRR+F++MT Y I P+IEHYGCMVDLLSRA
Sbjct: 364 QMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRA 423
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190
G LQEA++ + +MP+ N V+ GALLGGC++H+N +LAE +QL L+P N+G +V+LS
Sbjct: 424 GLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLS 483
Query: 191 NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWE 250
NIY+ RWED A++R M+ GV+K P S + +G VHEF GD++HP +++I++ +
Sbjct: 484 NIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLD 543
Query: 251 KLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLR 310
+L MK GY P T VV+ D+E++EKE L HSEKLA+ F L+ T PG IR+ KNLR
Sbjct: 544 ELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLR 603
Query: 311 VCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
VC DCH A KL+S I +REI+VRD NRFHCF+ GSCSC DYW
Sbjct: 604 VCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 645
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Query: 6 SNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEA 65
+ Q G +++ V +D+YVKCG + AR VF +M + W AM+ G A +G +EA
Sbjct: 198 AEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREA 257
Query: 66 LTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMT-TEYGIIPQIEHYGCMV 124
L F M G+KP+ G L AC +G +D GR+ + E+ P + ++
Sbjct: 258 LDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG--TALI 315
Query: 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
D+ ++ G EA+ + M K + +VW A++ G
Sbjct: 316 DMYAKCGSTVEAWVVFQQMR-KKDIIVWNAMILG 348
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S + N V +L+ +Y KCG L A+RVF EM + W+A+I G
Sbjct: 92 QLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAG 151
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ G++P+ T + +L AC + + G + + E G+ +
Sbjct: 152 DLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQE-GVAQSVFVA 210
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
VDL + G + +A E M K + V WGA++GG
Sbjct: 211 TAAVDLYVKCGEMAKAREVFDKMRHK-DAVAWGAMVGG 247
>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Cucumis sativus]
Length = 667
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/352 (49%), Positives = 233/352 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H+ ++S ++ C +LI MY KCG L+ A ++F+EM + V +W+AMI G A HG
Sbjct: 316 QMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHG 375
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++AL F+KM +KP+ +TF+ ++ AC H G+VD G ++F SM E+GI + HY
Sbjct: 376 AGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHY 435
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C++DLL RAG L EA I+ MP KP+ ++G LLG CR+HKN+DLAE A+R L LDP
Sbjct: 436 TCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDP 495
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +V L+NIYA +W+ VA+VRK+M+ V K PG+S I + V HEF + D HP
Sbjct: 496 TSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHP 555
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ I + +L MKL GY+P+ L D+EE+ KEK L HSEKLA+ FGLM T PG
Sbjct: 556 ELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPG 615
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPIR+ KNLRVC DCH A K IS I REI+VRD RFH F+ G CSCGDYW
Sbjct: 616 TPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 82/172 (47%), Gaps = 8/172 (4%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+++ V ++ Y+K G +E A R+F M + + TW++MI G + +A++ L F M
Sbjct: 227 KSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTM 286
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
IE ++PN ++ +L C ++ + GR+ + + ++ + ++ + + G
Sbjct: 287 IESRVRPNPLSLSSVLLGCSNLSALPLGRQ-MHQLVSKSPLSKDTTACTSLISMYCKCGD 345
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNG 184
L A++ MP K + + W A++ G H + L D + NG
Sbjct: 346 LDSAWKLFLEMPRK-DVISWNAMISGYAQHG------AGRKALHLFDKMRNG 390
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 106/260 (40%), Gaps = 23/260 (8%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
++I NTLI + + G ++ A +F M E+ +WSAMI G HG + A +
Sbjct: 165 KDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYK-- 222
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+G+K + V +L G V+ R F M + + G + + + G
Sbjct: 223 -NVGMK-SVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGL 280
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL---DPLNNGYHVVL 189
+ ++ + ++PN + ++L GC + L RQ+ QL PL+
Sbjct: 281 --KVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLG----RQMHQLVSKSPLSKDTTACT 334
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
S I + D+ KL + K W+++ ++G H K ++
Sbjct: 335 SLISMYC-KCGDLDSAWKLFLEMPRKDVISWNAM---------ISGYAQHGAGRKALHLF 384
Query: 250 EKLLDGMKLKGYIPNTSVVL 269
+K+ +G +I +V+L
Sbjct: 385 DKMRNGTMKPDWITFVAVIL 404
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 75/168 (44%), Gaps = 14/168 (8%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N ++ Y++ +E A F +M + + +W+ +I G A +GQ ++A F+ M E
Sbjct: 140 NIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPE---- 195
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
NGV++ ++ G ++ + ++ + ++ G M + G ++ A
Sbjct: 196 KNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYM-----KFGKVELAER 250
Query: 139 FIRNMPIKPNGVVWGALLGG----CRVHKNIDLAEEASRQLDQLDPLN 182
+ M +K N V W +++ G CR + + + + +PL+
Sbjct: 251 IFQRMAVK-NLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLS 297
>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 168/352 (47%), Positives = 239/352 (67%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH ++G+ + V N L+ MY KCGC++ A VF ++ + + +W+ M+ G A HG
Sbjct: 399 QVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHG 458
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++ALT F MI G+KP+ +T +G+L AC H G D G +F+SM +YGI P +HY
Sbjct: 459 FGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHY 518
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DLL RAG L+EA IRNMP +P+ WGALLG R+H N++L E+A+ + +++P
Sbjct: 519 ACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKMEP 578
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G +V+LSN+YA + RW DV+++R MR +GV+KTPG+S + V +H F GD HP
Sbjct: 579 HNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNKIHTFTVGDCFHP 638
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ E+L MK +GY+ +T +VL D+EE+EK+ L HSEKLA+ FG++ P G
Sbjct: 639 EKGRIYAFLEELDLKMKHEGYVSSTKLVLHDVEEEEKKHMLKYHSEKLAVAFGILTMPSG 698
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+MKNLRVCEDCH A K IS+IV R I+VRD +R+H F G CSC DYW
Sbjct: 699 KPIRVMKNLRVCEDCHNAIKHISKIVGRLIIVRDSHRYHHFSEGICSCRDYW 750
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 13/166 (7%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ NT+I Y + G L ARR+F E R VFTW+AM+ G EA F++M
Sbjct: 217 RDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEM 276
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ +++ ++ +D GR F M P I + M+ + G
Sbjct: 277 PQ----KREMSYNVMIAGYAQYKRMDMGRELFEEMP-----FPNIGSWNIMISGYCQNGD 327
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
L +A MP + + V W A++ G + L EEA L ++
Sbjct: 328 LAQARNLFDMMPQR-DSVSWAAIIAG---YAQNGLYEEAMNMLVEM 369
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 2/149 (1%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
NI N +I Y + G L AR +F M +R +W+A+I G A +G +EA+ +M
Sbjct: 311 NIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMK 370
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
G N TF L AC + ++ G++ + G +V + + G +
Sbjct: 371 RDGESLNRSTFCCALSACADIAALELGKQ-VHGQVVRTGYEKGCLVGNALVGMYCKCGCI 429
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
EAY+ + + K + V W +L G H
Sbjct: 430 DEAYDVFQGVQHK-DIVSWNTMLAGYARH 457
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 81/165 (49%), Gaps = 14/165 (8%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N ++ Y + L AR +F M E+ V +W+AM+ G G EA F++M
Sbjct: 99 NLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPH---- 154
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
N +++ GLL A G ++E RR F S +++ +I C++ + L +A +
Sbjct: 155 KNSISWNGLLAAYVRSGRLEEARRLFES-KSDWELIS----CNCLMGGYVKRNMLGDARQ 209
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183
+P++ + + W ++ G ++ DL++ +R+L + P+ +
Sbjct: 210 LFDQIPVR-DLISWNTMISG--YAQDGDLSQ--ARRLFEESPVRD 249
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 18 CNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGI 77
CN L+ YVK L AR++F ++ R + +W+ MI G A G +A ++ E
Sbjct: 191 CNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQA----RRLFEESP 246
Query: 78 KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAY 137
+ T+ +++A G +DE RR F M + + Y M+ ++ +
Sbjct: 247 VRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREM-----SYNVMIAGYAQYKRMDMGR 301
Query: 138 EFIRNMPIKPNGVVWGALLGG-CRVHKNIDLAEEASRQLDQLDP 180
E MP PN W ++ G C +N DLA+ +R L + P
Sbjct: 302 ELFEEMPF-PNIGSWNIMISGYC---QNGDLAQ--ARNLFDMMP 339
>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 755
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/345 (50%), Positives = 233/345 (67%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
++G+ V N L+ MY KCG +E AR F EMEER V +W+ MI G A HG KEAL
Sbjct: 411 RAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALE 470
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F+ M KP+ +T +G+L AC H G V++G +FYSM ++G+ + EHY CM+DLL
Sbjct: 471 IFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLL 530
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV 187
RAG L EA++ +++MP +P+ +WGALLG R+H+N +L A+ ++ +L+P N G +V
Sbjct: 531 GRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYV 590
Query: 188 VLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQ 247
+LSNIYA + +W D ++R +M GVKK PG+S I V VH F AGD HP+ EKI+
Sbjct: 591 LLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYA 650
Query: 248 MWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMK 307
E L MK GY+ T +VL D+EE+EKE L HSEKLA+ +G++N PPG PIR++K
Sbjct: 651 FLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIK 710
Query: 308 NLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
NLRVC DCH AFK IS I R I++RD NRFH F+ GSCSCGDYW
Sbjct: 711 NLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 15/152 (9%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ N ++ Y + G + ARR+F R VFTW+A++ G A +G +EA F+ M
Sbjct: 222 RDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM 281
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E N V++ ++ A +DE + F M + + M+ ++AG
Sbjct: 282 PE----RNAVSWNAMVAAYIQRRMMDEAKELFNMMPCR-----NVASWNTMLTGYAQAGM 332
Query: 133 LQEAYEFIRNMPIKPNGVVWGALL-----GGC 159
L+EA MP K + V W A+L GGC
Sbjct: 333 LEEAKAVFDTMPQK-DAVSWAAMLAAYSQGGC 363
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 33/180 (18%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ NT++ Y + G LE A+ VF M ++ +W+AM+ + G ++E L F +M
Sbjct: 315 RNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEM 374
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE-YGI------------------ 113
G N F +L C + ++ G + + YG+
Sbjct: 375 GRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNM 434
Query: 114 ------IPQIEH-----YGCMVDLLSRAGFLQEA---YEFIRNMPIKPNGVVWGALLGGC 159
++E + M+ +R GF +EA ++ +R KP+ + +L C
Sbjct: 435 EDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAAC 494
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 92/207 (44%), Gaps = 20/207 (9%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N ++ YV+ G +E AR +F E V +W+A++ G G+ EA F++M +
Sbjct: 166 NGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDV- 224
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
V++ ++ G + E RR F + + + + +V ++ G L+EA
Sbjct: 225 ---VSWNIMVSGYARRGDMVEARRLF-----DAAPVRDVFTWTAVVSGYAQNGMLEEARR 276
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN--GYHVVLSNIYAEA 196
MP + N V W A++ + +D A+E L + P N ++ +L+ YA+A
Sbjct: 277 VFDAMPER-NAVSWNAMVAAYIQRRMMDEAKE----LFNMMPCRNVASWNTMLTG-YAQA 330
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSI 223
E+ V M K W+++
Sbjct: 331 GMLEEAKAVFDTMPQ---KDAVSWAAM 354
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 10/140 (7%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N I +++ G + A R+F M R+ T++AM+ G + +G+ A + F + +
Sbjct: 42 NKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAI----PR 97
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ ++ LLHA + + R F M + Y M+ + G + A
Sbjct: 98 PDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVT-----YNVMISSHANHGLVSLARH 152
Query: 139 FIRNMPIKPNGVVWGALLGG 158
+ P K + V W +L
Sbjct: 153 YFDLAPEK-DAVSWNGMLAA 171
>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 980
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 169/352 (48%), Positives = 239/352 (67%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G+ V N L+ MY KCG ++ A F +EE+ V +W+ M+ G A HG
Sbjct: 415 QIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHG 474
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++ALT F M G+KP+ +T +G+L AC H G +D G +FYSMT +YG+IP +HY
Sbjct: 475 FGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHY 534
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DLL RAG L+EA + IRNMP +P WGALLG R+H N +L E+A+ + +++P
Sbjct: 535 TCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEP 594
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G +V+LSN+YA + RW D ++R MR++GV+K PG+S + V +H F GD +HP
Sbjct: 595 QNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHP 654
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ E+I+ E+L M+ +GY+ T +VL D+EE+EKE L HSEKLA+ FG++ P G
Sbjct: 655 EKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGG 714
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+MKNLRVCEDCH+A K IS+IV R I++RD +RFH F G CSCGDYW
Sbjct: 715 RPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 124/261 (47%), Gaps = 57/261 (21%)
Query: 93 HMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVW 152
+ G +D G +FY M EY + P +HY CM+DLL R L+E
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE----------------- 818
Query: 153 GALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212
GALLG R+H N +L E+A++ ++ P N+G MR++
Sbjct: 819 GALLGASRIHGNTELGEKAAQMFFKMGPQNSGI---------------------SKMRDV 857
Query: 213 GVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDI 272
GV+K PG+S V +H F G + E I G++ + + +
Sbjct: 858 GVQKVPGYSWFEVQNKIHTFSVGLFLSRERENI--------------GFLEELDLKMRER 903
Query: 273 EEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKN-LRVCEDCHAAFKLISEIVNREIV 331
EE+++ Y SE LA G++ P G P R+MK + VCEDC +A K +S+IV R I
Sbjct: 904 EEEKERTLKYL-SENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRLIT 962
Query: 332 VRDRNRFHCFQAGSCSCGDYW 352
+RD +RF+ CSCG+YW
Sbjct: 963 LRDSHRFN---ESICSCGEYW 980
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NT+I Y + G L ARR+F E R VFTW+AM+ G +G EA T F++M E
Sbjct: 239 NTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPE---- 294
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
N V++ ++ +D R F SM I + M+ + G + +A +
Sbjct: 295 KNEVSYNAMIAGYVQTKKMDIARELFESMPCR-----NISSWNTMITGYGQIGDIAQARK 349
Query: 139 FIRNMPIKPNGVVWGALLGG 158
F MP + + V W A++ G
Sbjct: 350 FFDMMP-QRDCVSWAAIIAG 368
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 10/146 (6%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ N ++ YV+ L ARR+F M E+ V +W++++ G A +G EA F+ M
Sbjct: 109 RDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNM 168
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E N +++ GLL A H G ++E F S +++ +I + C++ R
Sbjct: 169 PE----KNSISWNGLLAAYVHNGRIEEACLLFES-KSDWDLIS----WNCLMGGFVRKKK 219
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGG 158
L +A MP++ + + W ++ G
Sbjct: 220 LGDARWLFDKMPVR-DAISWNTMISG 244
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 14/156 (8%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RNI NT+I Y + G + AR+ F M +R +W+A+I G A G +EAL F ++
Sbjct: 326 RNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEI 385
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVD-----L 126
+ G N TF L C + ++ G++ ++ YG GC V +
Sbjct: 386 KQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGT-------GCFVGNALLAM 438
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ G + EA + + K + V W +L G H
Sbjct: 439 YFKCGSIDEANDTFEGIEEK-DVVSWNTMLAGYARH 473
>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
Length = 755
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/345 (50%), Positives = 233/345 (67%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
++G+ V N L+ MY KCG +E AR F EMEER V +W+ MI G A HG KEAL
Sbjct: 411 RAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALE 470
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F+ M KP+ +T +G+L AC H G V++G +FYSM ++G+ + EHY CM+DLL
Sbjct: 471 IFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLL 530
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV 187
RAG L EA++ +++MP +P+ +WGALLG R+H+N +L A+ ++ +L+P N G +V
Sbjct: 531 GRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYV 590
Query: 188 VLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQ 247
+LSNIYA + +W D ++R +M GVKK PG+S I V VH F AGD HP+ EKI+
Sbjct: 591 LLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYA 650
Query: 248 MWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMK 307
E L MK GY+ T +VL D+EE+EKE L HSEKLA+ +G++N PPG PIR++K
Sbjct: 651 FLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIK 710
Query: 308 NLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
NLRVC DCH AFK IS I R I++RD NRFH F+ GSCSCGDYW
Sbjct: 711 NLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 15/152 (9%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ N ++ Y + G + ARR+F R VFTW+A++ G A +G +EA F+ M
Sbjct: 222 RDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM 281
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E N V++ ++ A +DE + F M + + M+ ++AG
Sbjct: 282 PE----RNAVSWNAMVAAYIQRRMMDEAKELFNMMPCR-----NVASWNTMLTGYAQAGM 332
Query: 133 LQEAYEFIRNMPIKPNGVVWGALL-----GGC 159
L+EA MP K + V W A+L GGC
Sbjct: 333 LEEAKAVFDTMPQK-DAVSWAAMLAAYSQGGC 363
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 33/180 (18%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ NT++ Y + G LE A+ VF M ++ +W+AM+ + G ++E L F +M
Sbjct: 315 RNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEM 374
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE-YGI------------------ 113
G N F +L C + ++ G + + YG+
Sbjct: 375 GRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNM 434
Query: 114 ------IPQIEH-----YGCMVDLLSRAGFLQEA---YEFIRNMPIKPNGVVWGALLGGC 159
++E + M+ +R GF +EA ++ +R KP+ + +L C
Sbjct: 435 EDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAAC 494
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 91/207 (43%), Gaps = 20/207 (9%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N ++ YV+ G +E AR +F E +W+A++ G G+ EA F++M +
Sbjct: 166 NGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDV- 224
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
V++ ++ G + E RR F + + + + +V ++ G L+EA
Sbjct: 225 ---VSWNIMVSGYARRGDMVEARRLF-----DAAPVRDVFTWTAVVSGYAQNGMLEEARR 276
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN--GYHVVLSNIYAEA 196
MP + N V W A++ + +D A+E L + P N ++ +L+ YA+A
Sbjct: 277 VFDAMPER-NAVSWNAMVAAYIQRRMMDEAKE----LFNMMPCRNVASWNTMLTG-YAQA 330
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSI 223
E+ V M K W+++
Sbjct: 331 GMLEEAKAVFDTMPQ---KDAVSWAAM 354
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 51/265 (19%), Positives = 103/265 (38%), Gaps = 30/265 (11%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N I +++ G + A R+F M R+ T++AM+ G + +G+ A + F + +
Sbjct: 42 NKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAI----PR 97
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ ++ LLHA + + R F M + Y M+ + G + A
Sbjct: 98 PDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVT-----YNVMISSHANHGLVSLARH 152
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAER 198
+ P K + V W +L + ++ A + D ++ ++ ++S +
Sbjct: 153 YFDLAPEK-DAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAIS--WNALMSGYV----Q 205
Query: 199 WEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQ--------MWE 250
W ++ R+L + + W +I V G GD +A ++F W
Sbjct: 206 WGKMSEARELFDRMPGRDVVSW-NIMVSGYARR---GDMV--EARRLFDAAPVRDVFTWT 259
Query: 251 KLLDGMKLKGYIPNTSVVLLDIEEK 275
++ G G + V + E+
Sbjct: 260 AVVSGYAQNGMLEEARRVFDAMPER 284
>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 839
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 171/352 (48%), Positives = 238/352 (67%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + GFR ++ V N LI MY KCG E A +VF +ME+ V TW+++I G A HG
Sbjct: 488 QIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHG 547
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A +AL F M+E G+KPN VT+I +L AC H+G +DE + F SM +GI+P++EHY
Sbjct: 548 FASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHY 607
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL R+G L EA EFI +MP + +VW LG CRVH+N L E A++ + + +P
Sbjct: 608 ACMVDLLGRSGLLSEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMILEREP 667
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +++LSN+YA RWEDVA +RK M+ + K G S I V+ VH+F GD HP
Sbjct: 668 HDPATYILLSNLYATEGRWEDVAAIRKNMKQKQITKEAGSSWIEVENQVHKFHVGDTLHP 727
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+A++I++ ++L +K GY+PNT VL D+E+++KE++L++HSEKLA+ F L++TP
Sbjct: 728 KAQQIYEKLDELALKIKNVGYVPNTDFVLHDVEDEQKEQYLFQHSEKLAVAFALISTPNP 787
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLRVC DCH A K IS + REIVVRD NRFH + G+CSC DYW
Sbjct: 788 KPIRVFKNLRVCGDCHTAIKYISMVSGREIVVRDANRFHHMKDGTCSCNDYW 839
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 81/153 (52%), Gaps = 8/153 (5%)
Query: 11 FRRNIRVCNTLIDMYVKCGC----LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEAL 66
F ++ V LIDM+VK GC LE AR+VF +M E+ V TW+ MI LA +G EA+
Sbjct: 188 FDSHVCVGCELIDMFVK-GCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAI 246
Query: 67 TSFNKM-IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125
F +M + G P+ T GL+ C + ++ G+ +S G++ + +VD
Sbjct: 247 DLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKE-LHSWVIRSGLVLDLCVGCSLVD 305
Query: 126 LLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ ++ G +QEA + M + N + W AL+ G
Sbjct: 306 MYAKCGLVQEARKVFDGMR-EHNVMSWTALVNG 337
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 78/139 (56%), Gaps = 6/139 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + +SG ++ V +L+DMY KCG ++ AR+VF M E V +W+A++ G G
Sbjct: 284 LHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGG 343
Query: 62 A--KEALTSF-NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+EA+ F N +++ G+ PN TF G+L AC + D G + + T + G + I+
Sbjct: 344 GYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQ-VHGQTIKLG-LSAID 401
Query: 119 HYGC-MVDLLSRAGFLQEA 136
G +V + +++G ++ A
Sbjct: 402 CVGNGLVSVYAKSGRMESA 420
>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
Length = 704
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/340 (50%), Positives = 234/340 (68%), Gaps = 1/340 (0%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+N+ V L+DMY KCG + AR++F M R V TW+AMI G HG K ++ F +M
Sbjct: 366 KNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEM 425
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ IKPN +TF+ L AC H G V+EG FF SM +YGI P ++HYG MVDLL RAG
Sbjct: 426 KKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGR 485
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNI 192
L +A++FI+ MPIKP V+GA+LG C++HKN+DL E+A+ ++ +L+P + GYHV+L+NI
Sbjct: 486 LNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANI 545
Query: 193 YAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKL 252
YA A W VA+VR +M G++KTPG S + + VH F +G +HPQ++KI+ E L
Sbjct: 546 YATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSYLETL 605
Query: 253 LDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVC 312
+D ++ GY+P+T+ + D+E+ K + L HSEKLA+ FGL+NT GTPI I KNLRVC
Sbjct: 606 VDEIRAAGYVPDTNSI-HDVEDDVKVQLLNTHSEKLAIAFGLLNTSTGTPIHIRKNLRVC 664
Query: 313 EDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
DCH A K IS + REI+VRD +RFH F+ G CSCGDYW
Sbjct: 665 GDCHNATKYISLVTGREIIVRDMHRFHLFKDGVCSCGDYW 704
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 133/277 (48%), Gaps = 15/277 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y ++GF + V L+DMY KCG + AR +F M+ RTV +W++MI G G
Sbjct: 153 VHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGD 212
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+ A+ F KM++ G++P VT +G LHAC +G ++ G +F + + + + +
Sbjct: 213 AEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERG-KFVHKLVDQLKLDSDVSVMN 271
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
++ + S+ + A + +N+ K V W A++ G + ++ A A ++ +
Sbjct: 272 SLISMYSKCKRVDIAADIFKNLRNK-TLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIK 330
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ + +V S I A AE + R K + L +++ + + +V + H
Sbjct: 331 PDSFTMV-SVIPALAEL--SIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIH-T 386
Query: 242 AEKIFQM--------WEKLLDGMKLKGYIPNTSVVLL 270
A K+F M W ++DG G + TSV L
Sbjct: 387 ARKLFDMMNARHVITWNAMIDGYGTHG-LGKTSVELF 422
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H SGF N+ +++MY KC + A +F M ER + W+ MI G A +G
Sbjct: 52 IHGSVITSGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGF 111
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AK AL +M E G +P+ +T + +L A + G + G +
Sbjct: 112 AKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMA-VHGYVLRAGFESLVNVST 170
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ S+ G + A M + V W +++ G
Sbjct: 171 ALVDMYSKCGSVSIARVIFDGMDHR-TVVSWNSMIDG 206
>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
Length = 706
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/351 (49%), Positives = 239/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++ G R ++ + LIDMY KCG + A VF M ER V+TW++ + GLA++G
Sbjct: 356 VHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGM 415
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++ L F +M G++PNGVTF+ +L C G VDEGR F SM + +GI P +EHYG
Sbjct: 416 GRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYG 475
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL RAG L +A FI MP++P+ VWGALL R+HKN++L + A +L ++
Sbjct: 476 CMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESK 535
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+ HV+LSNIYA+++ W+ V+ VR +M+ GVKK PG S+I V G VHEF G +THP+
Sbjct: 536 NDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPR 595
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I M ++ ++L+GYI NT VL DIEE++KE + HSEKLA+ FGL+ P
Sbjct: 596 HKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDM 655
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVCEDCH K+IS++ NREIV+RDRNRFH F+ G+CSC DYW
Sbjct: 656 EIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 706
>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 766
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 169/352 (48%), Positives = 239/352 (67%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G+ V N L+ MY KCG ++ A F +EE+ V +W+ M+ G A HG
Sbjct: 415 QIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHG 474
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++ALT F M G+KP+ +T +G+L AC H G +D G +FYSMT +YG+IP +HY
Sbjct: 475 FGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHY 534
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DLL RAG L+EA + IRNMP +P WGALLG R+H N +L E+A+ + +++P
Sbjct: 535 TCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEP 594
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G +V+LSN+YA + RW D ++R MR++GV+K PG+S + V +H F GD +HP
Sbjct: 595 QNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHP 654
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ E+I+ E+L M+ +GY+ T +VL D+EE+EKE L HSEKLA+ FG++ P G
Sbjct: 655 EKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGG 714
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+MKNLRVCEDCH+A K IS+IV R I++RD +RFH F G CSCGDYW
Sbjct: 715 RPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NT+I Y + G L ARR+F E R VFTW+AM+ G +G EA T F++M E
Sbjct: 239 NTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPE---- 294
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
N V++ ++ +D R F SM I + M+ + G + +A +
Sbjct: 295 KNEVSYNAMIAGYVQTKKMDIARELFESMPCR-----NISSWNTMITGYGQIGDIAQARK 349
Query: 139 FIRNMPIKPNGVVWGALLGG 158
F MP + + V W A++ G
Sbjct: 350 FFDMMPQR-DCVSWAAIIAG 368
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 10/146 (6%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ N ++ YV+ L ARR+F M E+ V +W++++ G A +G EA F+ M
Sbjct: 109 RDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNM 168
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E N +++ GLL A H G ++E F S +++ +I + C++ R
Sbjct: 169 PE----KNSISWNGLLAAYVHNGRIEEACLLFES-KSDWDLIS----WNCLMGGFVRKKK 219
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGG 158
L +A MP++ + + W ++ G
Sbjct: 220 LGDARWLFDKMPVR-DAISWNTMISG 244
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 14/156 (8%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RNI NT+I Y + G + AR+ F M +R +W+A+I G A G +EAL F ++
Sbjct: 326 RNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEI 385
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVD-----L 126
+ G N TF L C + ++ G++ ++ YG GC V +
Sbjct: 386 KQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGT-------GCFVGNALLAM 438
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ G + EA + + K + V W +L G H
Sbjct: 439 YFKCGSIDEANDTFEGIEEK-DVVSWNTMLAGYARH 473
>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
Length = 604
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/352 (49%), Positives = 238/352 (67%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+HEY + GF + ++V LIDM+ KCG L A +F M R WSAMI A HG
Sbjct: 253 IHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGD 312
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+A++ F +M G++P+ +TF+GLL+AC H G V++GR +FYSM+ YGI P I+HYG
Sbjct: 313 GLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYG 372
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L EAY F+ + IK ++W LL C H N+++A+ ++ +LD
Sbjct: 373 CMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDDA 432
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G +V+LSN+YA RWEDV +RKLM++ GV K PG SS+ V+ VVHEF +GD H
Sbjct: 433 HGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCV 492
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVL-LDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ ++ + ++L+ +KL GY+P+TS+V D+EE+ KE L HSEKLA+ FGL+NTPPG
Sbjct: 493 SVELRRALDELMKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPG 552
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IR+ KNLR+C DCH A KLIS I R+IV+RD RFH F+ G CSCGD+W
Sbjct: 553 TTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFHRFEDGKCSCGDFW 604
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 92/177 (51%), Gaps = 6/177 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ + G NI +C TLI+MY +C + AR VF EME+ + +++A+I G A Q
Sbjct: 152 LHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQ 211
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL+ F ++ I+P VT + ++ +C +G +D G ++ + + G ++
Sbjct: 212 PNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLG-KWIHEYVKKKGFDKYVKVNT 270
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASRQ 174
++D+ ++ G L +A M ++ + W A++ H K I + EE R+
Sbjct: 271 ALIDMFAKCGSLTDAISIFEGMRVR-DTQAWSAMIVAFATHGDGLKAISMFEEMKRE 326
>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
Length = 699
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/351 (49%), Positives = 239/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++ G R ++ + LIDMY KCG + A VF M ER V+TW++ + GLA++G
Sbjct: 349 VHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGM 408
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++ L F +M G++PNGVTF+ +L C G VDEGR F SM + +GI P +EHYG
Sbjct: 409 GRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYG 468
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL RAG L +A FI MP++P+ VWGALL R+HKN++L + A +L ++
Sbjct: 469 CMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESK 528
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+ HV+LSNIYA+++ W+ V+ VR +M+ GVKK PG S+I V G VHEF G +THP+
Sbjct: 529 NDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPR 588
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I M ++ ++L+GYI NT VL DIEE++KE + HSEKLA+ FGL+ P
Sbjct: 589 HKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDM 648
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVCEDCH K+IS++ NREIV+RDRNRFH F+ G+CSC DYW
Sbjct: 649 EIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 699
>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
Length = 785
Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/350 (49%), Positives = 236/350 (67%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H Y GF + +CN LIDMY KCG + AR VF M+ + +W+AMI G IHG
Sbjct: 436 HGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLG 495
Query: 63 KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC 122
EAL F+ ++ +G+KP+ +TFI LL +C H G V EGR +F +M+ ++ I+P++EH C
Sbjct: 496 MEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCIC 555
Query: 123 MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182
MVD+L RAG + EA+ FIRNMP +P+ +W ALL CR+HKNI+L EE S+++ L P +
Sbjct: 556 MVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPES 615
Query: 183 NGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQA 242
G V+LSNIY+ A RW+D A +R ++ G+KK PG S I ++G+VH FV GD++H Q
Sbjct: 616 TGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQL 675
Query: 243 EKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTP 302
+I + E+LL MK GY S V D+EE+EKE+ L HSEKLA+ FG++N G P
Sbjct: 676 SQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRP 735
Query: 303 IRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I + KNLRVC DCHAA K ++ I REI VRD NRFH F+ G+C+CGD+W
Sbjct: 736 ILVTKNLRVCGDCHAAIKFMTVITKREITVRDANRFHHFKNGTCNCGDFW 785
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 101/213 (47%), Gaps = 15/213 (7%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ G ++ VC L+D Y KCG L A+R+F M R V W+AMI G +++G
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGL 190
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRR---FFYSMTTEYGIIPQIE 118
+A+ +M E GI PN T +G+L G + G+ + + + G++
Sbjct: 191 CDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTG 250
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL--- 175
++D+ ++ L A + M ++ N V W A++GG + A E Q+
Sbjct: 251 ----LLDMYAKCQCLLYARKIFDVMGVR-NEVSWSAMIGGYVXSDCMKEALELFDQMILK 305
Query: 176 DQLDPLNNGYHVVLSNIYAEAERWEDVARVRKL 208
D +DP V L ++ + D++R RKL
Sbjct: 306 DAMDPTP----VTLGSVLRACAKLTDLSRGRKL 334
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 12/167 (7%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y + G +I + NTL+ MY KCG ++ A R F M + ++SA++ G +G
Sbjct: 333 KLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNG 392
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM-----GWVDEGRRFFYSMTTEYGIIP 115
A AL+ F M GI P+ T +G+L AC H+ G+ G T+ I
Sbjct: 393 NAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLIC- 451
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ S+ G + A E M + + V W A++ G +H
Sbjct: 452 -----NALIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGIH 492
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 90/177 (50%), Gaps = 2/177 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H++ ++ + V + L +Y+ C + ARR+F E+ +V W+ +I+ A +G
Sbjct: 29 KIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNG 88
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A+ ++ M+ +G++PN T+ +L AC + +++G +S +G+ +
Sbjct: 89 PFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE-IHSHAKMFGLESDVFVC 147
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
+VD ++ G L EA +M + + V W A++ GC ++ D A + Q+ +
Sbjct: 148 TALVDFYAKCGILVEAQRLFSSMSHR-DVVAWNAMIAGCSLYGLCDDAVQLIMQMQE 203
>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Cucumis sativus]
Length = 667
Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/352 (49%), Positives = 232/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H+ ++S ++ C +LI MY KCG L+ A ++F+EM + V TW+AMI G A HG
Sbjct: 316 QMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHG 375
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++AL F+KM +KP+ +TF+ ++ AC H G+VD G ++F SM E+GI + HY
Sbjct: 376 AGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHY 435
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C++DLL RAG L EA I+ MP P+ ++G LLG CR+HKN+DLAE A+R L LDP
Sbjct: 436 TCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDP 495
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +V L+NIYA +W+ VA+VRK+M+ V K PG+S I + V HEF + D HP
Sbjct: 496 TSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHP 555
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ I + +L MKL GY+P+ L D+EE+ KEK L HSEKLA+ FGLM T PG
Sbjct: 556 ELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPG 615
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPIR+ KNLRVC DCH A K IS I REI+VRD RFH F+ G CSCGDYW
Sbjct: 616 TPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 82/172 (47%), Gaps = 8/172 (4%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+++ V ++ Y+K G +E A R+F M + + TW++MI G + +A++ L F M
Sbjct: 227 KSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTM 286
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
IE ++PN ++ +L C ++ + GR+ + + ++ + ++ + + G
Sbjct: 287 IESRVRPNPLSLSSVLLGCSNLSALPLGRQ-MHQLVSKSPLSKDTTACTSLISMYCKCGD 345
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNG 184
L A++ MP K + + W A++ G H + L D + NG
Sbjct: 346 LDSAWKLFLEMPRK-DVITWNAMISGYAQHG------AGRKALHLFDKMRNG 390
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 106/260 (40%), Gaps = 23/260 (8%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
++I NTLI + + G ++ A +F M E+ +WSAMI G HG + A +
Sbjct: 165 KDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYK-- 222
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+G+K + V +L G V+ R F M + + G + + + G
Sbjct: 223 -NVGMK-SVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGL 280
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL---DPLNNGYHVVL 189
+ ++ + ++PN + ++L GC + L RQ+ QL PL+
Sbjct: 281 --KVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLG----RQMHQLVSKSPLSKDTTACT 334
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
S I + D+ KL + K W+++ ++G H K ++
Sbjct: 335 SLISMYC-KCGDLDSAWKLFLEMPRKDVITWNAM---------ISGYAQHGAGRKALHLF 384
Query: 250 EKLLDGMKLKGYIPNTSVVL 269
+K+ +G +I +V+L
Sbjct: 385 DKMRNGTMKPDWITFVAVIL 404
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/168 (19%), Positives = 75/168 (44%), Gaps = 14/168 (8%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N ++ Y++ ++ A F +M + + +W+ +I G A +GQ ++A F+ M E
Sbjct: 140 NIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPE---- 195
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
NGV++ ++ G ++ + ++ + ++ G M + G ++ A
Sbjct: 196 KNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYM-----KFGKVELAER 250
Query: 139 FIRNMPIKPNGVVWGALLGG----CRVHKNIDLAEEASRQLDQLDPLN 182
+ M +K N V W +++ G CR + + + + +PL+
Sbjct: 251 IFQRMAVK-NLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLS 297
>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
Length = 706
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 175/351 (49%), Positives = 239/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++ G R ++ + LIDMY KCG + A VF M ER V+TW++ + GLA++G
Sbjct: 356 VHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGM 415
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++ L F +M G++PNGVTF+ +L C G VDEGR F SM + +GI P +EHYG
Sbjct: 416 GRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYG 475
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL RAG L +A FI MP++P+ VWGALL R+HKN++L + A +L ++
Sbjct: 476 CMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESK 535
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+ HV+LSNIYA+++ W+ V+ VR +M+ GVKK PG S+I V G VHEF G +THP+
Sbjct: 536 NDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPR 595
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I M ++ ++L+GYI NT VL DIEE++KE + HSEKLA+ FGL+ P
Sbjct: 596 HKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDM 655
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVCEDCH K+IS++ NREIV+RDRNRFH F+ G+CSC DYW
Sbjct: 656 EIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 706
>gi|294464140|gb|ADE77588.1| unknown [Picea sitchensis]
Length = 312
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 174/312 (55%), Positives = 219/312 (70%)
Query: 41 MEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG 100
M + V +W+AMI G +HG ++AL F +M + G+KPN +TFI +L AC H G VDEG
Sbjct: 1 MSNKNVVSWNAMIVGYGMHGHGEDALVLFTQMQQRGVKPNEITFISVLSACSHAGLVDEG 60
Query: 101 RRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCR 160
+ + MT +Y I P +EHY CMVDLL RAG L EA++FI MPI+P VWGA LG CR
Sbjct: 61 WKCYNCMTLDYAITPTVEHYACMVDLLGRAGHLNEAWDFIEKMPIEPGASVWGAFLGSCR 120
Query: 161 VHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGW 220
+H NI+L E + L LDP N GY+V+LSNIYA A RW+DVA+VRK+M+ VKK+PG
Sbjct: 121 IHCNIELGERVAELLLNLDPDNAGYYVLLSNIYAAAGRWDDVAKVRKMMKEKDVKKSPGC 180
Query: 221 SSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKF 280
S I V+ +H FV GD +HPQ E I+ M E L M+ GY+P T VL D+EE+ KE
Sbjct: 181 SLIEVNNKLHSFVVGDISHPQTEAIYAMLETLARQMEAVGYVPCTDFVLHDVEEEIKENM 240
Query: 281 LYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHC 340
L+ HSEKLA+ FGL++T GT IRI KNLRVC DCH+A K IS+IV REI++RD NRFH
Sbjct: 241 LFAHSEKLAIAFGLISTRSGTSIRITKNLRVCGDCHSATKFISKIVKREIIMRDLNRFHH 300
Query: 341 FQAGSCSCGDYW 352
F+ G CSCGDYW
Sbjct: 301 FKDGLCSCGDYW 312
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 179/351 (50%), Positives = 248/351 (70%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y+ ++ + + + LIDMY KCG +E A +VF + +R V TWS +I GLA+HG+
Sbjct: 281 VHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGR 340
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AK+ L F M G+ P+ VT+IGLL AC H G V+EGR FF M G+ P+IEHYG
Sbjct: 341 AKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYG 400
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L+E+ E I NMPIKP+ V+W ALLG C++H N+++ + + L +L P
Sbjct: 401 CMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPH 460
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +V LSNIYA WE VA+VR +M+ + V+K PG S I +DGV+HEF+ D++HP+
Sbjct: 461 DSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWIELDGVIHEFLVEDDSHPK 520
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++KI M +++ + L GY PNT+ VL +++E++KE L HSEK+A+ FGL++T P T
Sbjct: 521 SKKIHSMLQEMSRNLILVGYRPNTTQVLTNMDEEDKESSLNYHSEKIAIAFGLISTQPQT 580
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P+RI KNLR+CEDCH++ KLIS+I R+I+VRDR RFH F GSCSC DYW
Sbjct: 581 PLRITKNLRICEDCHSSIKLISKIYKRKIIVRDRKRFHHFVNGSCSCMDYW 631
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 79/145 (54%), Gaps = 4/145 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N +ID YV+ G LE AR +F EM +R+V +W+ MI G A G KEA+ F +M +
Sbjct: 197 NVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVP 256
Query: 79 PNGVTFIGLLHACGHMGWVDEGR-RFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAY 137
PN VT + +L A +G ++ G+ Y++ G+ + ++D+ ++ G +++A
Sbjct: 257 PNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLG--SALIDMYAKCGSIEKAL 314
Query: 138 EFIRNMPIKPNGVVWGALLGGCRVH 162
+ +P K N V W ++ G +H
Sbjct: 315 QVFEGLP-KRNVVTWSTIIAGLAMH 338
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 67/143 (46%), Gaps = 16/143 (11%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE-IGIKPNGVTFIGLLH 89
L+ AR++F M F+++ +I+ L+ +AL F +M+E ++PN TF +
Sbjct: 61 LDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFK 120
Query: 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEF---------- 139
ACG + EGR+ + + ++G+ +V + G +++A+
Sbjct: 121 ACGRAERLREGRQ-VHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGC 179
Query: 140 --IRNMPIKPNG--VVWGALLGG 158
IR+ + +G V+W ++ G
Sbjct: 180 DGIRDKKRRVDGDVVLWNVMIDG 202
>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
Length = 696
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 177/357 (49%), Positives = 239/357 (66%), Gaps = 6/357 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ ++ +I V + L+DMY KCGCL +RRVF EM + V TW+ +I +HG+
Sbjct: 340 IHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGK 399
Query: 62 AKEALTSFNKMI-EIG----IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ 116
+EAL F M+ E G KPN VTFI + AC H G + EG FY M ++G+ P
Sbjct: 400 GEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPT 459
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGV-VWGALLGGCRVHKNIDLAEEASRQL 175
+HY C+VDLL RAG L+EAYE + MP + + V W +LLG CR+H+N++L E A++ L
Sbjct: 460 SDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNL 519
Query: 176 DQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAG 235
L+P ++V+LSNIY+ A W VRK MR +GVKK PG S I VH+F+AG
Sbjct: 520 LHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAG 579
Query: 236 DETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLM 295
D +HPQ+E++ E L + M+ +GY+P+TS VL +++E EKE L HSEKLA+ FG++
Sbjct: 580 DVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGIL 639
Query: 296 NTPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
NTPPGT IR+ KNLRVC DCHAA K IS+I+ REI+VRD RFH F+ G+CSCGDYW
Sbjct: 640 NTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 696
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N V + L+DMY C +E RRVF + R + W+AMI G A +G ++AL F +MI
Sbjct: 249 NSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMI 308
Query: 74 EI-GIKPNGVTFIGLLHACGH-MGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
++ G+ PN T ++ AC H + + +G+ ++ + I +VD+ ++ G
Sbjct: 309 KVAGLLPNTTTMASVMPACVHSLAAIAKGKE-IHAYAIRNMLASDITVGSALVDMYAKCG 367
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
L + MP K N + W L+ C +H
Sbjct: 368 CLNLSRRVFNEMPNK-NVITWNVLIMACGMH 397
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V+ Y G N L+ MY K G ++ ++ +F +R + +W+ MI + +
Sbjct: 135 VNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDR 194
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR 101
EAL F M+ G++ +GVT +L AC H+ +D G+
Sbjct: 195 FSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGK 234
>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 896
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 177/357 (49%), Positives = 239/357 (66%), Gaps = 6/357 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ ++ +I V + L+DMY KCGCL +RRVF EM + V TW+ +I +HG+
Sbjct: 540 IHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGK 599
Query: 62 AKEALTSFNKMI-EIG----IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ 116
+EAL F M+ E G KPN VTFI + AC H G + EG FY M ++G+ P
Sbjct: 600 GEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPT 659
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGV-VWGALLGGCRVHKNIDLAEEASRQL 175
+HY C+VDLL RAG L+EAYE + MP + + V W +LLG CR+H+N++L E A++ L
Sbjct: 660 SDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNL 719
Query: 176 DQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAG 235
L+P ++V+LSNIY+ A W VRK MR +GVKK PG S I VH+F+AG
Sbjct: 720 LHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAG 779
Query: 236 DETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLM 295
D +HPQ+E++ E L + M+ +GY+P+TS VL +++E EKE L HSEKLA+ FG++
Sbjct: 780 DVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGIL 839
Query: 296 NTPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
NTPPGT IR+ KNLRVC DCHAA K IS+I+ REI+VRD RFH F+ G+CSCGDYW
Sbjct: 840 NTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 896
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 19/178 (10%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ + GF+ + V N L+DMY + G ++ + +F ME R +W+ MI G + G+
Sbjct: 422 IHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGR 481
Query: 62 AKEALTSFNKMIEI-----------------GIKPNGVTFIGLLHACGHMGWVDEGRRFF 104
AL ++M + KPN +T + +L C + + +G+
Sbjct: 482 YSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKE-I 540
Query: 105 YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++ + I +VD+ ++ G L + MP K N + W L+ C +H
Sbjct: 541 HAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNK-NVITWNVLIMACGMH 597
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 3/146 (2%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N V + L+DMY C +E RRVF + R + W+AMI G A +G ++AL F +MI
Sbjct: 332 NSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMI 391
Query: 74 EI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
++ G+ PN T ++ AC H + + + G ++D+ SR G
Sbjct: 392 KVAGLLPNTTTMASVMPACVHCEAF-SNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGK 450
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGG 158
+ + +M ++ + V W ++ G
Sbjct: 451 MDISETIFDSMEVR-DRVSWNTMITG 475
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H YS + G ++ N L+ MY K G ++ ++ +F +R + +W+ MI +
Sbjct: 218 QLHGYSLRVGDQKTF-TNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSD 276
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR 101
+ EAL F M+ G++ +GVT +L AC H+ +D G+
Sbjct: 277 RFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGK 317
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/311 (18%), Positives = 128/311 (41%), Gaps = 63/311 (20%)
Query: 1 RVHEYSNQSGF-RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
++H + + G+ ++ V NTL++MY KCG + +VF + +R +W++ I L
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRF 172
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGW----------------------- 96
+ ++AL +F M ++ + T + + AC ++G
Sbjct: 173 EKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTF 232
Query: 97 --------------VDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRN 142
VD+ + F S + + M+ S++ EA F R
Sbjct: 233 TNNALMAMYAKLGRVDDSKALFESFVDR-----DMVSWNTMISSFSQSDRFSEALAFFRL 287
Query: 143 M---PIKPNGVVWGALLGGCRVHKNIDLAEEA-SRQLDQLDPLNNGY-HVVLSNIYAEAE 197
M ++ +GV ++L C + +D+ +E + L D + N + L ++Y
Sbjct: 288 MVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCR 347
Query: 198 RWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMK 257
+ E R++ ++ ++ W+++ ++G + EK ++ ++ +K
Sbjct: 348 QVES---GRRVFDHILGRRIELWNAM---------ISGYARNGLDEKALILF---IEMIK 392
Query: 258 LKGYIPNTSVV 268
+ G +PNT+ +
Sbjct: 393 VAGLLPNTTTM 403
>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
Length = 723
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 166/352 (47%), Positives = 243/352 (69%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SGF+ N+ +CN LI MY +CG +E A +VF EM + V +W++MI G A HG
Sbjct: 372 QIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHG 431
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A AL +F+KM+E G+ PN VT+I +L AC H+G + EG + F SM E+GI+P++EHY
Sbjct: 432 FATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHY 491
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL R+G L+EA E + +MP K + +V LG CRVH N+DL + A+ + + DP
Sbjct: 492 ACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDP 551
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +++LSN++A A +WE+VA +RK M+ + K G S I V+ VH+F GD +HP
Sbjct: 552 HDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHP 611
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
QA++I+ ++L +K GYIP+T VL D+EE++KE++L++HSEK+A+ +G ++T
Sbjct: 612 QAQEIYDELDQLALKIKELGYIPSTDFVLHDVEEEQKEQYLFQHSEKIAVAYGFISTSTS 671
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLRVC DCH AFK S + +EIV+RD NRFH F+ G+CSC DYW
Sbjct: 672 RPIRVFKNLRVCGDCHTAFKYFSIVRRKEIVLRDANRFHHFKDGTCSCNDYW 723
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 81/153 (52%), Gaps = 8/153 (5%)
Query: 11 FRRNIRVCNTLIDMYVKC-GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
F ++ V LIDM+VK G LE A +VF M +R V TW+ MI G +++A+ F
Sbjct: 74 FESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLF 133
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC-MVDLLS 128
M+ G P+ T G++ AC MG + GR+ F+ + + G+ + GC +VD+ +
Sbjct: 134 LDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQ-FHCLVMKSGLDLDV-CVGCSLVDMYA 191
Query: 129 RA---GFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ G + +A + MP+ N + W A++ G
Sbjct: 192 KCVADGSVDDARKVFDRMPVH-NVMSWTAIITG 223
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 2/146 (1%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V N+LI MY +CG +E AR+ F + E+ + +++ ++ A ++EA FN++ G
Sbjct: 287 VGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAG 346
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
N TF LL +G + +G + +S + G + ++ + SR G ++ A
Sbjct: 347 TGVNAFTFASLLSGASSIGAIGKGEQ-IHSRILKSGFKSNLHICNALISMYSRCGNIEAA 405
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVH 162
++ M N + W +++ G H
Sbjct: 406 FQVFNEMG-DGNVISWTSMITGFAKH 430
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 8 QSGFRRNIRVCNTLIDMYVKC---GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA-K 63
+SG ++ V +L+DMY KC G ++ AR+VF M V +W+A+I G G +
Sbjct: 173 KSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDR 232
Query: 64 EALTSFNKMIEIGIKPNGVTFIGLLHACGHMG--WVDE 99
EA+ F +M++ +KPN TF +L AC ++ W+ E
Sbjct: 233 EAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGE 270
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 43 ERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRR 102
+R + +WSA+I A + +A EA+++F M+E G PN F G+ AC + + G+
Sbjct: 4 KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63
Query: 103 FFYSMTTEYGIIPQIEHYGC-MVDLLSRA-GFLQEAYEFIRNMPIKPNGVVWGALL 156
F + G GC ++D+ + G L+ AY+ MP + N V W ++
Sbjct: 64 IF-GFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDR-NVVTWTLMI 117
>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
Length = 630
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 174/345 (50%), Positives = 233/345 (67%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
++G+ V N L+ MY KCG +E AR F EMEER V +W+ MI G A HG KEAL
Sbjct: 286 RAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALE 345
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F+ M KP+ +T +G+L AC H G V++G +FYSM ++G+ + EHY CM+DLL
Sbjct: 346 IFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLL 405
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV 187
RAG L EA++ +++MP +P+ +WGALLG R+H+N +L A+ ++ +L+P N G +V
Sbjct: 406 GRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYV 465
Query: 188 VLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQ 247
+LSNIYA + +W D ++R +M GVKK PG+S I V VH F AGD HP+ EKI+
Sbjct: 466 LLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYA 525
Query: 248 MWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMK 307
E L MK GY+ T +VL D+EE+EKE L HSEKLA+ +G++N PPG PIR++K
Sbjct: 526 FLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIK 585
Query: 308 NLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
NLRVC DCH AFK IS I R I++RD NRFH F+ GSCSCGDYW
Sbjct: 586 NLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 630
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 15/152 (9%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ N ++ Y + G + ARR+F R VFTW+A++ G A +G +EA F+ M
Sbjct: 97 RDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM 156
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E N V++ ++ A +DE + F M + + M+ ++AG
Sbjct: 157 PE----RNAVSWNAMVAAYIQRRMMDEAKELFNMMPCR-----NVASWNTMLTGYAQAGM 207
Query: 133 LQEAYEFIRNMPIKPNGVVWGALL-----GGC 159
L+EA MP K + V W A+L GGC
Sbjct: 208 LEEAKAVFDTMPQK-DAVSWAAMLAAYSQGGC 238
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 13/160 (8%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N L+ YV+ G + AR +F M R V +W+ M+ G A G EA ++ +
Sbjct: 72 NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEA----RRLFDAAPV 127
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
+ T+ ++ G ++E RR F +M + + MV + + EA E
Sbjct: 128 RDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAV-----SWNAMVAAYIQRRMMDEAKE 182
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
MP + N W +L G + + EEA D +
Sbjct: 183 LFNMMPCR-NVASWNTMLTG---YAQAGMLEEAKAVFDTM 218
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 33/180 (18%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ NT++ Y + G LE A+ VF M ++ +W+AM+ + G ++E L F +M
Sbjct: 190 RNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEM 249
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMT-TEYGI------------------ 113
G N F +L C + ++ G + + YG+
Sbjct: 250 GRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNM 309
Query: 114 ------IPQIEH-----YGCMVDLLSRAGFLQEA---YEFIRNMPIKPNGVVWGALLGGC 159
++E + M+ +R GF +EA ++ +R KP+ + +L C
Sbjct: 310 EDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAAC 369
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 92/207 (44%), Gaps = 20/207 (9%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N ++ YV+ G +E AR +F E V +W+A++ G G+ EA F++M +
Sbjct: 41 NGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDV- 99
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
V++ ++ G + E RR F + + + + +V ++ G L+EA
Sbjct: 100 ---VSWNIMVSGYARRGDMVEARRLF-----DAAPVRDVFTWTAVVSGYAQNGMLEEARR 151
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN--GYHVVLSNIYAEA 196
MP + N V W A++ + +D A+E L + P N ++ +L+ YA+A
Sbjct: 152 VFDAMPER-NAVSWNAMVAAYIQRRMMDEAKE----LFNMMPCRNVASWNTMLTG-YAQA 205
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSI 223
E+ V M K W+++
Sbjct: 206 GMLEEAKAVFDTMPQ---KDAVSWAAM 229
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 54/264 (20%), Positives = 102/264 (38%), Gaps = 22/264 (8%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R+ N +I + G + AR F E+ +W+ M+ +G+ +EA FN
Sbjct: 4 RDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR 63
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E + +++ L+ G + E R F M + + MV +R G
Sbjct: 64 TEWDV----ISWNALMSGYVQWGKMSEARELFDRMPGR-----DVVSWNIMVSGYARRGD 114
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNI 192
+ EA P++ + W A++ G + + EEA R D + N +
Sbjct: 115 MVEARRLFDAAPVR-DVFTWTAVVSG---YAQNGMLEEARRVFDAMPERNAVSWNAMVAA 170
Query: 193 YAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD----GVVHEFVAGDETHPQAEKIFQM 248
Y + R D A ++L + + W+++ G++ E A +T PQ + +
Sbjct: 171 YIQ-RRMMDEA--KELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAV--S 225
Query: 249 WEKLLDGMKLKGYIPNTSVVLLDI 272
W +L G T + +++
Sbjct: 226 WAAMLAAYSQGGCSEETLQLFIEM 249
>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Glycine max]
Length = 673
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 173/352 (49%), Positives = 239/352 (67%), Gaps = 1/352 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+HEY + N+ + N+LIDMY +CGCLE A+RVF M+ R V +W+++I + G
Sbjct: 323 RIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTG 382
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q A+ F +M G P+ + F+ +L AC H G ++EG+ +F MT +Y I P IEH+
Sbjct: 383 QGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHF 442
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL R+G + EAY I+ MP+KPN VWGALL CRV+ N+D+ A+ +L QL P
Sbjct: 443 ACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAP 502
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+GY+V+LSNIYA+A RW +V +R LM+ ++K PG S++ ++ VH F+AGD HP
Sbjct: 503 EESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTYHP 562
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q+++I++ L+ MK GY+P T L D+EE++KE L HSEKLA+ F ++NT
Sbjct: 563 QSKEIYEELSVLVGKMKELGYVPKTDSALHDVEEEDKECHLAVHSEKLAIVFAILNTQE- 621
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+PIRI KNLRVC DCH A KLIS+IV REIV+RD NRFH F+ G CSCGDYW
Sbjct: 622 SPIRITKNLRVCGDCHIAAKLISKIVQREIVIRDTNRFHHFKDGICSCGDYW 673
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 99/233 (42%), Gaps = 22/233 (9%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G N+ V N LI +Y KCGCL AR V EM+ + V +W++M+ G A +
Sbjct: 154 QLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNM 213
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMG-----WVDE-----GRRFFYSMTTE 110
Q +AL +M + KP+ T LL A + +V+E ++ S
Sbjct: 214 QFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWNVM 273
Query: 111 YGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
+ + G VDL + G + + I + ALL G R+H+ ++ +
Sbjct: 274 ISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKL 333
Query: 171 ASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSI 223
L L N L ++YA ED RV M+ + W+S+
Sbjct: 334 CPNML-----LENS----LIDMYARCGCLEDAKRVFDRMK---FRDVASWTSL 374
>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 175/336 (52%), Positives = 232/336 (69%), Gaps = 1/336 (0%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V NTL+DMY K G +E A++VF + +R V +W++M+ G + HG K AL F +M+
Sbjct: 256 VGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTR 315
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
I PN +TF+ +L AC H G +DEGR +F M +Y + PQI HY MVDLL RAG L A
Sbjct: 316 IAPNDITFLCVLTACSHAGLLDEGRHYF-DMMKKYNVEPQISHYVTMVDLLGRAGHLDRA 374
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
+FI MPIKP VWGALLG CR+HKN++L A+ + +LD G HV+L NIYA A
Sbjct: 375 IQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALA 434
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGM 256
RW D A+VRK+M+ GVKK P S + ++ VH FVA D+ HPQ +I MWE++ D +
Sbjct: 435 GRWNDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISDKI 494
Query: 257 KLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCH 316
K GY+P++S VLL ++++E+E L HSEKLAL F L+NTPPG+ IRI KN+R+C DCH
Sbjct: 495 KEIGYVPDSSHVLLCMDQQEREAKLQYHSEKLALAFALLNTPPGSTIRIKKNIRICGDCH 554
Query: 317 AAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+AFK +S++V REI+VRD NRFH F G+CSC DYW
Sbjct: 555 SAFKFVSKLVEREIIVRDTNRFHHFCDGACSCEDYW 590
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 4/159 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H S FR ++ + NTL+++Y KCG L AR++F EM R V TW+A+I G + H +
Sbjct: 37 IHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDR 96
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVD--EGRRFFYSMTTEYGIIPQIEH 119
++AL +M+ IG+KPN T LL A +G D +GR+ + + YG +
Sbjct: 97 PQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQ-LHGLCLRYGYDSNVYV 155
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ +R L+EA + I ++ + N V W AL+ G
Sbjct: 156 SCAILDMYARCHHLEEA-QLIFDVMVSKNEVSWNALIAG 193
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 86/162 (53%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G+ N+ V ++DMY +C LE A+ +F M + +W+A+I G A G
Sbjct: 139 QLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKG 198
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q +A F+ M+ +KP T+ +L AC MG +++G ++ +++ ++G
Sbjct: 199 QGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQG-KWVHALMIKWGEKLVAFVG 257
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ +++G +++A + + K + V W ++L G H
Sbjct: 258 NTLLDMYAKSGSIEDAKKVFDRLA-KRDVVSWNSMLTGYSQH 298
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 170/352 (48%), Positives = 240/352 (68%), Gaps = 2/352 (0%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIHG 60
H+Y F +N + ++DMY KCG ++ A +F + +T F +++MI GLA HG
Sbjct: 371 HQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHG 430
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ A+T F ++I G+KP+ VTF+G+L ACGH G ++EG++ F SM YGI PQ+EHY
Sbjct: 431 LGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHY 490
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLL R G L+EAY+ ++ MP + N V+W ALL CR H N+ + E A ++L +++
Sbjct: 491 GCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEA 550
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +V+LSNI A+A +WE+ +VRK+M + G++K PGWS I + G +H FVA D++HP
Sbjct: 551 QHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHP 610
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q ++I M + + +K GY+PNT+ V+ DI+E+EKE + HSEKLAL FGLM P
Sbjct: 611 QGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPT 670
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLR+C DCH AFKL+SEI REI VRD RFH F+ GSCSC D+W
Sbjct: 671 DTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDFW 722
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 3/168 (1%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G ++ ++++ Y +CG + AR++F M ER V +W+AMI G + GQ EAL F
Sbjct: 276 GTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELF 335
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMVDLLS 128
+M +GIKP+ VT + +L AC +G D G+R Y E G+ Q ++D+ +
Sbjct: 336 KEMEALGIKPDEVTLVAVLSACARLGAFDLGKR-LYHQYIENGVFNQNTILTAAVMDMYA 394
Query: 129 RAGFLQEAYEFIRNMPIK-PNGVVWGALLGGCRVHKNIDLAEEASRQL 175
+ G + A E R + G V+ +++ G H + A R+L
Sbjct: 395 KCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFREL 442
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 98/215 (45%), Gaps = 4/215 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + GF ++ V N LI +Y G L AR +F E R + +++ MI+G A Q
Sbjct: 133 VHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQ 192
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY-GIIPQIEHY 120
+ AL F +M GI P+ TF+ L C + + G++ + I I
Sbjct: 193 PESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLK 252
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+VD+ ++ G + A M + W +++ G I++A + + + D
Sbjct: 253 SAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDV 312
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVK 215
++ + ++S Y++A + + + K M LG+K
Sbjct: 313 IS--WTAMISG-YSQAGQCSEALELFKEMEALGIK 344
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 5/140 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEG---ARRVFIEMEERTVFTWSAMIQGLA 57
++H + +G I + LI + G +G +R +F +++ +F W+ MI+G +
Sbjct: 27 QIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRGYS 86
Query: 58 IHGQAKEALTSFNKMIEIGIK-PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ 116
+EA+ + MI GI PN TF LL++C + ++ G +S ++G
Sbjct: 87 RSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHE-VHSHIIKHGFESD 145
Query: 117 IEHYGCMVDLLSRAGFLQEA 136
+ ++ L S G L A
Sbjct: 146 LFVRNALIHLYSVFGNLNLA 165
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 170/351 (48%), Positives = 245/351 (69%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ ++G+ + V N ++DMYVKCG L AR +F + + + +W+ MI G +HG
Sbjct: 576 IHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGY 635
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ +FN+M GI+P+ V+FI +L+AC H G +DEG + F M E I P +EHY
Sbjct: 636 GSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYA 695
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL+R G L +A++FI+ MPIKP+ +WGALL GCR+H ++ LAE+ + ++ +L+P
Sbjct: 696 CMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPE 755
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+V+L+NIYAEAE+WE+V ++RK + G+KK PG S I + G ++ FVAGD + PQ
Sbjct: 756 NTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQ 815
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A+KI + ++L MK +GY P T+ LL+ +E+EKE L HSEKLA+ FG++N PPG
Sbjct: 816 AKKIELLLKRLRSKMKEEGYSPKTAYALLNADEREKEVALCGHSEKLAMAFGMLNLPPGK 875
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR+ KNLRVC DCH K +S+ +REI++RD +RFH F+ GSCSC YW
Sbjct: 876 TIRVTKNLRVCGDCHEMAKFMSKSASREIILRDSSRFHHFKDGSCSCRGYW 926
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 3/158 (1%)
Query: 2 VHEYSNQSG-FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+H YS ++ R +R NTL+DMY KCG L A RVF M+E+TV +W++MI G G
Sbjct: 374 LHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREG 433
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ A+ F++M G+ P+ +L+AC G + G + + E +
Sbjct: 434 LSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSG-KIVHDYIRENNLETNSFVS 492
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ D+ ++ G +++A++ +M K + + W ++GG
Sbjct: 493 NALTDMYAKCGSMKDAHDVFSHMK-KKDVISWNTMIGG 529
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 5/162 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+Y ++ N V N L DMY KCG ++ A VF M+++ V +W+ MI G +
Sbjct: 476 VHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSL 535
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHY 120
EALT F +M + KP+G T +L AC + +D+GR Y++ Y + +
Sbjct: 536 PNEALTLFAEM-QRESKPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTN- 593
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ + G L A +P K + V W ++ G +H
Sbjct: 594 -AVVDMYVKCGLLVLARSLFDMIPNK-DLVSWTVMIAGYGMH 633
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
L+ MYVKCG L+ R VF ++ E +F W+ MI + G E++ F +M+E+GIKPN
Sbjct: 191 LVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPN 250
Query: 81 GVTFIGLLHACGHMGWVDEGRR 102
TF +L + V+EGR+
Sbjct: 251 SYTFSSILKCFAAVARVEEGRQ 272
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 1/158 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + GF V N+LI Y + A+++F E+ +R V +W++MI G +G
Sbjct: 272 QVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNG 331
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ F KM+ G+ + T + + AC ++G + G+ + ++
Sbjct: 332 LDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFN 391
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ S+ G L A M K V W +++ G
Sbjct: 392 NTLLDMYSKCGDLNSAIRVFERMDEK-TVVSWTSMITG 428
>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 173/351 (49%), Positives = 240/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y G R ++ + L+DMY KCG + + VF M ER ++TW++ + GLA++G
Sbjct: 278 VHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIYTWTSALSGLAMNGM 337
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+E L F +M G++PNGVTF+ +L C G V+EGR F SM ++ + P +EHYG
Sbjct: 338 GEECLELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSMKDKHKVEPWLEHYG 397
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL RAG L +A +FI +MP++P+ VWGALL R+H N+DL + A +L +++
Sbjct: 398 CMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGALLNASRIHNNVDLGKHAMHKLTEIESK 457
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+ HV+LSNIYAE+ W+ V++VR +M++ GVKK PG S+I VDG VHEF G ++HP+
Sbjct: 458 NDAAHVLLSNIYAESHNWKGVSKVRNMMKSKGVKKMPGCSAIEVDGKVHEFFVGSKSHPR 517
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ I M ++ ++L+GY NT VL DIEE+EKE + HSEKLAL FGL+ P T
Sbjct: 518 YKDIQTMLAEMSHRLRLQGYAANTKEVLFDIEEEEKEGAISLHSEKLALAFGLITLPEDT 577
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC+DCH KLIS++ +REIV+RDRNRFH F+ G+CSC DYW
Sbjct: 578 VIRIVKNLRVCKDCHDYTKLISKVFDREIVMRDRNRFHHFKHGACSCRDYW 628
>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 1083
Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 174/349 (49%), Positives = 235/349 (67%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ ++ V LID+Y KCG LE A +F E+ T W+A+I L IHG
Sbjct: 447 KIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHG 506
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +EAL F M+ +K + +TF+ LL AC H G VDEG++ F M EYGI P ++HY
Sbjct: 507 RGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHY 566
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLL RAG+L++AYE +RNMPI+P+ +WGALL C+++ N +L AS +L ++D
Sbjct: 567 GCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDS 626
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N GY+V+LSNIYA E+WE V +VR L R+ G++KTPGWSS+ V F G++THP
Sbjct: 627 ENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHP 686
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I++ + L MK GY+P+ S V DIEE EKE+ L HSE+LA+ FG+++TPP
Sbjct: 687 KYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTPPR 746
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCG 349
+PIRI KNLRVC DCH A K IS I REIVVRD NRFH F+ G CSC
Sbjct: 747 SPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDGICSCA 795
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 77/151 (50%), Gaps = 3/151 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+++ + N L++MY K G + A VF ++ + +W+ ++ G +G A EA+ ++N M
Sbjct: 357 KDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMM 416
Query: 73 IEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
E PN T++ ++ A H+G + +G + ++ + + + C++DL + G
Sbjct: 417 EECRDTIPNQGTWVSIIPAYSHVGALQQGMK-IHAKLIKNSLYLDVFVATCLIDLYGKCG 475
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
L++A +P + V W A++ +H
Sbjct: 476 RLEDAMSLFYEIP-RDTSVPWNAIIASLGIH 505
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + GF ++ V +L+ +Y + G L+ A +VF++M + V +W+AMI G +G
Sbjct: 142 KVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNG 201
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A AL N+M G+K + +T +L C V G + ++G+ +
Sbjct: 202 NAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVING-VLIHLHVLKHGLDSDVFVS 260
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++++ S+ G LQ+A M ++ + V W +++
Sbjct: 261 NALINMYSKFGRLQDAQMVFDQMEVR-DLVSWNSIIAA 297
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 77/153 (50%), Gaps = 9/153 (5%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G +NI + LI++YV G + +R F + ++ +F+W+++I G+ EA+
Sbjct: 49 GKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCV 108
Query: 70 NKMIEI----GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125
N++ + ++P+ TF +L AC + VD G++ + + G + +V
Sbjct: 109 NQLFSMCGGGHLRPDFYTFPPILKAC--VSLVD-GKK-VHCCVFKMGFEDDVFVAASLVH 164
Query: 126 LLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
L SR G L A++ +MP+K G W A++ G
Sbjct: 165 LYSRYGVLDVAHKVFVDMPVKDVG-SWNAMISG 196
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 4/170 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G ++ V N LI+MY K G L+ A+ VF +ME R + +W+++I +
Sbjct: 244 IHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNND 303
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AL F M GI+P+ +T + L + R + + +
Sbjct: 304 PSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGN 363
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
+V++ ++ G++ A+ +P K + + W L+ G + LA EA
Sbjct: 364 ALVNMYAKLGYMNCAHTVFDQLPRK-DTISWNTLVTG---YTQNGLASEA 409
>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
Length = 659
Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 174/352 (49%), Positives = 238/352 (67%), Gaps = 1/352 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+HEY + N+ + N+LIDMY +CGCL+ A+RVF M+ R V +W+++I + G
Sbjct: 309 RIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTG 368
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q A+ F +M+ G P+ + F+ +L AC H G +DEGR +F MT +Y I P+IEHY
Sbjct: 369 QGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHY 428
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL RAG + EAY I+ MPI+PN VW LL CRV N+D+ A+ L QL P
Sbjct: 429 ACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAP 488
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+GY+V+LSNIYA+A RW++V +R +M+ ++KTPG S++ ++ VH F+AGD +HP
Sbjct: 489 EQSGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHP 548
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q+++I++ L+ MK GY+P T L D+EE++KE L HSEKLA+ F L+NT
Sbjct: 549 QSKEIYEELGVLVAKMKELGYVPETDSALHDVEEEDKEGHLAVHSEKLAIVFALLNTQE- 607
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI KNLRVC DCH A KLIS+IV REI+VRD NRFH F+ G CSCGDYW
Sbjct: 608 YQIRITKNLRVCGDCHIAAKLISKIVEREIIVRDTNRFHHFKDGVCSCGDYW 659
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 101/229 (44%), Gaps = 32/229 (13%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G N+ V N LI MY KCGCL ARRVF EM + V +W++M+ G A + + +AL
Sbjct: 149 GLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEIC 208
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGW--VDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
+M + G KP+G T L+ A + V + F ++ + I + M+ +
Sbjct: 209 REMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLI-----SWNVMIRVY 263
Query: 128 SRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGC----------RVHKNIDLAEEASRQ 174
+ +A + M ++P+ + + ++L C R+H+ ++ +
Sbjct: 264 MKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNL 323
Query: 175 LDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSI 223
L L N L ++YA +D RV M+ + W+S+
Sbjct: 324 L-----LENS----LIDMYARCGCLDDAKRVFDRMK---FRDVASWTSL 360
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 84/204 (41%), Gaps = 8/204 (3%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
L+ Y CG R+VF EM +R V ++ MI+ + + + L F +M+ G +P+
Sbjct: 59 LMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPD 118
Query: 81 GVTFIGLLHACGHMGWVDEGRRF---FYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAY 137
T+ +L AC E R+ + + G+ + ++ + + G L EA
Sbjct: 119 NYTYPCVLKACS----CSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEAR 174
Query: 138 EFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAE 197
M I + V W +++ G + D A E R+++ +G +
Sbjct: 175 RVFDEM-IWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANT 233
Query: 198 RWEDVARVRKLMRNLGVKKTPGWS 221
E+V V K+ NL K W+
Sbjct: 234 SSENVLYVEKIFVNLERKNLISWN 257
>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
Length = 1100
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 176/342 (51%), Positives = 235/342 (68%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
F N + LIDMY KCG A VF +M ++ + W+AMI GL + G K A
Sbjct: 759 FLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVG 818
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
+M + G+K N TFIGLL +C H G + +GRR+F++MT Y I P+IEHYGCMVDLLSRA
Sbjct: 819 QMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRA 878
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190
G LQEA++ + +MP+ N V+ GALLGGC++H+N +LAE +QL L+P N+G +V+LS
Sbjct: 879 GLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLS 938
Query: 191 NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWE 250
NIY+ RWED A++R M+ GV+K P S + +G VHEF GD++HP +++I++ +
Sbjct: 939 NIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLD 998
Query: 251 KLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLR 310
+L MK GY P T VV+ D+E++EKE L HSEKLA+ F L+ T PG IR+ KNLR
Sbjct: 999 ELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLR 1058
Query: 311 VCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
VC DCH A KL+S I +REI+VRD NRFHCF+ GSCSC DYW
Sbjct: 1059 VCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1100
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Query: 6 SNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEA 65
+ Q G +++ V +D+YVKCG + AR VF +M + W AM+ G A +G +EA
Sbjct: 653 AEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREA 712
Query: 66 LTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMT-TEYGIIPQIEHYGCMV 124
L F M G+KP+ G L AC +G +D GR+ + E+ P + ++
Sbjct: 713 LDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG--TALI 770
Query: 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
D+ ++ G EA+ + M K + +VW A++ G
Sbjct: 771 DMYAKCGSTVEAWVVFQQMR-KKDIIVWNAMILG 803
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S + N V +L+ +Y KCG L A+RVF EM + W+A+I G
Sbjct: 547 QLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAG 606
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ G++P+ T + +L AC + + G + + E G+ +
Sbjct: 607 DLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQE-GVAQSVFVA 665
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
VDL + G + +A E M K + V WGA++GG
Sbjct: 666 TAAVDLYVKCGEMAKAREVFDKMRHK-DAVAWGAMVGG 702
>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 742
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 173/351 (49%), Positives = 237/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Q R++ + L+DMY+KCG +E A F +M R V TWSAMI GLA +G
Sbjct: 392 LHACIEQRLVERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGM 451
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K AL F M G N VT+I +L AC H +DEGR +F M + I PQIEHYG
Sbjct: 452 GKAALEHFFWMKCDGFHANSVTYIAVLTACSHSCLLDEGRLYFDEMRLLHNIRPQIEHYG 511
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CM+DLL R+G L EA + ++ MP++PN V+W ++L CRVHKN+DLA+ A+ L +L+P
Sbjct: 512 CMIDLLGRSGLLDEAMDLVQTMPMQPNAVIWASILSACRVHKNVDLAQNAAHHLLKLEPA 571
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ +V + NIY ++ +WED +++R+LM GVKKT G+SSI V G VH+F+ GD +HPQ
Sbjct: 572 EDAVYVQMYNIYIDSRQWEDASKIRRLMEKRGVKKTAGYSSIAVAGQVHKFIVGDRSHPQ 631
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I M E++ +K GY P TS + +D++E+EKE+ L HSEKLA+ FGL++ P
Sbjct: 632 IAEIVVMMEEIGRRLKSAGYSPITSQITVDVDEEEKEQALLAHSEKLAIAFGLVSLAPNL 691
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P+ I+KNLRVCEDCH+A KLIS + NREI+VRDR+RFH F+ G CSC D+W
Sbjct: 692 PVHIIKNLRVCEDCHSAIKLISRLWNREIIVRDRSRFHHFRGGVCSCNDFW 742
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 3/168 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+++ T+I K G L+ ARR+ R V TW+ +I G + G+A EA+ FN M
Sbjct: 169 KDVVAWTTVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSM 228
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ GI P+ VT IG+L ACG + ++ G + + + ++ + ++D+ ++ G
Sbjct: 229 LSDGIAPDEVTVIGMLSACGQLKDLNFGCS-LHMLVGDKRMLMSDKLVVALIDMYAKCGD 287
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGG-CRVHKNIDLAEEASRQLDQLD 179
A E + W A++ G C+V ++D+A Q++ D
Sbjct: 288 TGRAREVFDALGRGRGPQPWNAMIDGYCKV-GHVDIARSLFDQMEDHD 334
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 83/159 (52%), Gaps = 4/159 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R E + G R + N +ID Y K G ++ AR +F +ME+ V T++++I G G
Sbjct: 290 RAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGG 349
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +EAL F KM G+ + T +GLL A +G + +GR + E ++ + +
Sbjct: 350 RLREALLLFTKMRRHGLGADNFTMVGLLTASASLGALPQGRALHACI--EQRLVERDVYL 407
Query: 121 G-CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
G ++D+ + G ++EA + M ++ + W A++GG
Sbjct: 408 GTALLDMYMKCGRVEEAMVAFKQMSVR-DVHTWSAMIGG 445
>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Glycine max]
Length = 616
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 176/351 (50%), Positives = 245/351 (69%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y + R + + L+DMY KCG ++ A +VF M+ER V+TWS+ I GLA++G
Sbjct: 266 VHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGF 325
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+E+L FN M G++PNG+TFI +L C +G V+EGR+ F SM YGI PQ+EHYG
Sbjct: 326 GEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYG 385
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
MVD+ RAG L+EA FI +MP++P+ W ALL CR++KN +L E A R++ +L+
Sbjct: 386 LMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHACRMYKNKELGEIAQRKIVELEDK 445
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +V+LSNIYA+ + WE V+ +R+ M+ GVKK PG S I VDG VHEF+ GD++HP+
Sbjct: 446 NDGAYVLLSNIYADYKNWESVSSLRQTMKAKGVKKLPGCSVIEVDGEVHEFIVGDKSHPR 505
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I E++ ++L GY+ NT+ VL DIEE+EKE L +HSEK+A+ FGL++
Sbjct: 506 YDEIEMKLEEISKCLRLSGYVANTNPVLFDIEEEEKEDALSKHSEKVAIAFGLISLKGVV 565
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR++ NLR+C DCH K+IS+I NREI+VRDRNRFH F+ G CSC DYW
Sbjct: 566 PIRVVMNLRICWDCHNVAKMISKIFNREIIVRDRNRFHHFKDGECSCKDYW 616
>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 172/352 (48%), Positives = 239/352 (67%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+HEY + GF R ++V TLIDMY KCG L+ A VF +M +R WSA+I A HG
Sbjct: 235 MHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGD 294
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+A++ N+M + ++P+ +TF+G+L+AC H G V+EG +F+ MT EYGI+P I+HYG
Sbjct: 295 GFQAISMLNEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYG 354
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L EAY+FI +PIKP ++W LL C H N+++ + ++ +LD
Sbjct: 355 CMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFELDDS 414
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G +V+ SN+ A +W+DV +RK M + G K PG SSI V+ VVHEF AG+ H
Sbjct: 415 HGGDYVIFSNLCARYGKWDDVNHLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAGEGVHST 474
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLL-DIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ + + ++L+ +K GY+P+TS+V D+E++EKE L HSEKLA+TFGL+NTPPG
Sbjct: 475 STTLHRALDELVKELKSAGYVPDTSLVFYADMEDEEKEIILRYHSEKLAITFGLLNTPPG 534
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IR++KNLRVC DCH A K IS I R+I++RD RFH F+ G CSCGDYW
Sbjct: 535 TTIRVVKNLRVCGDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 586
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 102/186 (54%), Gaps = 6/186 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ + G N+ V TLI+MY CG ++ +RRVF +++E V ++A+I LA +
Sbjct: 133 QLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLARNN 192
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A EAL F ++ EIG+KP VT + +L +C +G +D G R+ + +YG ++
Sbjct: 193 RANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLG-RWMHEYVKKYGFDRYVKVN 251
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASRQLD 176
++D+ ++ G L +A R+MP K + W A++ H + I + E ++
Sbjct: 252 TTLIDMYAKCGSLDDAVNVFRDMP-KRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKV 310
Query: 177 QLDPLN 182
Q D +
Sbjct: 311 QPDEIT 316
>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
Length = 1124
Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 176/342 (51%), Positives = 235/342 (68%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
F N + LIDMY KCG A VF +M ++ + W+AMI GL + G K A
Sbjct: 783 FLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVG 842
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
+M + G+K N TFIGLL +C H G + +GRR+F++MT Y I P+IEHYGCMVDLLSRA
Sbjct: 843 QMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRA 902
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190
G LQEA++ + +MP+ N V+ GALLGGC++H+N +LAE +QL L+P N+G +V+LS
Sbjct: 903 GLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLS 962
Query: 191 NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWE 250
NIY+ RWED A++R M+ GV+K P S + +G VHEF GD++HP +++I++ +
Sbjct: 963 NIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLD 1022
Query: 251 KLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLR 310
+L MK GY P T VV+ D+E++EKE L HSEKLA+ F L+ T PG IR+ KNLR
Sbjct: 1023 ELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLR 1082
Query: 311 VCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
VC DCH A KL+S I +REI+VRD NRFHCF+ GSCSC DYW
Sbjct: 1083 VCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1124
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Query: 6 SNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEA 65
+ Q G +++ V +D+YVKCG + AR VF +M + W AM+ G A +G +EA
Sbjct: 677 AEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREA 736
Query: 66 LTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMT-TEYGIIPQIEHYGCMV 124
L F M G+KP+ G L AC +G +D GR+ + E+ P + ++
Sbjct: 737 LDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG--TALI 794
Query: 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
D+ ++ G EA+ + M K + +VW A++ G
Sbjct: 795 DMYAKCGSTVEAWVVFQQMR-KKDIIVWNAMILG 827
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S + N V +L+ +Y KCG L A+RVF EM + W+A+I G
Sbjct: 571 QLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAG 630
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ G++P+ T + +L AC + + G + + E G+ +
Sbjct: 631 DLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQE-GVAQSVFVA 689
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
VDL + G + +A E M K + V WGA++GG
Sbjct: 690 TAAVDLYVKCGEMAKAREVFDKMRHK-DAVAWGAMVGG 726
>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
Length = 1217
Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 171/352 (48%), Positives = 238/352 (67%), Gaps = 3/352 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y + N+ + N LIDMY KCGCL+ AR VF M+ R V +W+AMI G
Sbjct: 331 KIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSG 390
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +A+ F+KM + G+ P+ + F+ L AC H G ++EGR F MT Y I P++EH
Sbjct: 391 RGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHL 450
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG ++EAY+FI+ MP++PN VWGALLG CRVH N D+ A+ +L QL P
Sbjct: 451 ACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQLAP 510
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+GY+V+LSNIYA+A RWE+V +R +M++ G+KK PG S++ V+ ++H F+ GD +HP
Sbjct: 511 EQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHP 570
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNT--- 297
Q+ +I++ + L+ MK GY+P++ L D+EE++KE L HSEKLA+ F LMNT
Sbjct: 571 QSAEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTEEE 630
Query: 298 PPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCG 349
IRI KNLR+C DCH A KLIS+I +REI++RD NRFH F+ G CSC
Sbjct: 631 DSNNAIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCA 682
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 116/283 (40%), Gaps = 18/283 (6%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH R N + L+ Y + AR+VF E+ ER V + MI+ +G
Sbjct: 62 VHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGF 121
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+E + F M +KP+ TF +L AC G + G++ S T+ G+ +
Sbjct: 122 YREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGS-ATKVGLSSTLFVGN 180
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+V + + GFL EA + M + + V W +L+ G ++ D A E R+++ +
Sbjct: 181 GLVSMYGKCGFLSEARLVLDEMS-RRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKIS 239
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGW---------SSITVDGV-VHE 231
++ + E+V V+ + +G K W +++ V+ V ++
Sbjct: 240 HDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYS 299
Query: 232 FVAGDETHPQAEKIFQMWEKLLD------GMKLKGYIPNTSVV 268
+ D P A I + D G K+ GYI ++
Sbjct: 300 GMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLI 342
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 6/162 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G + V N L+ MY KCG L AR V EM R V +W++++ G A +
Sbjct: 162 KIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQ 221
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +AL +M + I + T LL A + E + M + G + +
Sbjct: 222 RFDDALEVCREMESVKISHDAGTMASLLPAVSNT--TTENVMYVKDMFFKMG-KKSLVSW 278
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGC 159
M+ + + EA E M +P+ V ++L C
Sbjct: 279 NVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPAC 320
>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 705
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 173/352 (49%), Positives = 244/352 (69%), Gaps = 7/352 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y ++GF NI + ++L+DMY KCG + A+++F M R + +W+AMI G A+HG
Sbjct: 361 QLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHG 420
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
QA +A+ F +M GIK +L AC H G VDE ++F SMT ++GI P +EHY
Sbjct: 421 QAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHY 473
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+ DLL RAG L+EAY+FI M I P G +W LL CRVHKNID+AE+ + ++ ++DP
Sbjct: 474 AAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEVDP 533
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +++L+NIY+ A RW++ A+ R MR +G++KTP S I V V+ F+AGDE+HP
Sbjct: 534 NNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHP 593
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
EKI + E L++ M+ +GY+P+TS V D+EE++K+ + HSE+LA+ FG++NTP G
Sbjct: 594 CYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAG 653
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR+ KNLRVC DCH A K IS+IV REIVVRD +RFH F+ G+CSCGDYW
Sbjct: 654 MTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 705
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 2/175 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H S + G +I V ++LIDMY KC + + RVF + ER +W+++I G +G
Sbjct: 261 IHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGL 320
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
E L F +M+ IKP +F ++ AC H+ + G++ + T G I
Sbjct: 321 FDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQ-LHGYITRNGFDENIFIAS 379
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLD 176
+VD+ ++ G ++ A + M ++ + V W A++ GC +H A E Q++
Sbjct: 380 SLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGCALHGQAPDAIELFEQME 433
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 76/190 (40%), Gaps = 34/190 (17%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLE-------GARRVFIEMEERT--------- 45
+H Y + G ++ N L++MY K LE GA VF EM ERT
Sbjct: 128 LHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVL 187
Query: 46 ----------------VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH 89
+ +W+ +I G A +G +E L +M +KP+ T +L
Sbjct: 188 SEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLP 247
Query: 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNG 149
+ G+ + + G+ I ++D+ ++ + ++ + + + +G
Sbjct: 248 LIAENVDISRGKE-IHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCR-VFTLLTERDG 305
Query: 150 VVWGALLGGC 159
+ W +++ GC
Sbjct: 306 ISWNSIIAGC 315
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 180/351 (51%), Positives = 240/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + ++ + + N L DMY KCGC+ A+ VF EM ER V +WS +I GLA++G
Sbjct: 282 IHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGY 341
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A EA F +MIE G++PN ++F+GLL AC H G VD+G +F M YGI P+IEHYG
Sbjct: 342 ANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYG 401
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLLSRAG L +A I +MP++PN +VWGALLGGCR++K+ + E ++ +LD
Sbjct: 402 CVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSN 461
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G V L+N+YA R +D A R MR+ KTPG S I ++ V+EF GD +HPQ
Sbjct: 462 HSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQ 521
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ +I+ M +L MK+ GY P T +V+ +I+E+EKE L HSEKLAL FGL+NT GT
Sbjct: 522 SLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGT 581
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC DCH A K+IS+IV REIVVRDR+RFH F+ G CSC DYW
Sbjct: 582 TIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCSCNDYW 632
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 7/171 (4%)
Query: 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNG--VTFIGLLHACGHMGWVDEGRR 102
+F ++A+++ + H ++ FN + + PN TF +L AC + V EG++
Sbjct: 89 NIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQK 148
Query: 103 FFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ T+YG + +VDL + G A + M ++ + V W L+ G
Sbjct: 149 -VHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVR-DVVSWNTLISGYCFS 206
Query: 163 KNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213
+D +A D + N + + YA E++ D + + M++ G
Sbjct: 207 GMVD---KARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEG 254
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 174/346 (50%), Positives = 241/346 (69%)
Query: 7 NQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEAL 66
+++ F N + LIDMY KCG + A +F M+++ W+AM+ GL+++G AK
Sbjct: 343 DRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVF 402
Query: 67 TSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126
+ F+ + + GI+P+ TFIGLL C H G+V+EGR+FF +M + + P IEHYGCMVDL
Sbjct: 403 SLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDL 462
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYH 186
L RAG L EA++ I NMP+KPN VVWGALLGGC++HK+ LAE+ ++L +L+P N+G +
Sbjct: 463 LGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNY 522
Query: 187 VVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIF 246
V LSNIY+ RWE+ ++R M+ ++K S I +DG+VHEF+ GD++H +EKI+
Sbjct: 523 VQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIY 582
Query: 247 QMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIM 306
++L +K G++P T VL DIEE+EKE FL HSEKLA+ FGL+ +PP IR++
Sbjct: 583 AKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVV 642
Query: 307 KNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
KNLRVC DCH A KLIS+I REI++RD NRFH F GSCSC DYW
Sbjct: 643 KNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+ Y + SG RN+ V +L+DMYVKCG LE A +F M E+ + +WS MIQG A +G
Sbjct: 237 IDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGL 296
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL F +M +KP+ T +G+L AC +G +D G + S+ +
Sbjct: 297 PQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLG-IWASSLMDRNEFLSNPVLGT 355
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ S+ G + +A+E M K + VVW A++ G
Sbjct: 356 ALIDMYSKCGSVTQAWEIFTAMK-KKDRVVWNAMMVG 391
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 114/245 (46%), Gaps = 38/245 (15%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++G+ ++ V +L+ +YVKC + A +VF ++ ++ V +W+A+I G G
Sbjct: 135 KIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSG 194
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMG------WVDE-------GRRFFYSM 107
+EA+ +F K++E+G+KP+ + + +L AC +G W+D GR F +
Sbjct: 195 HFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVAT 254
Query: 108 TTE---------------YGIIPQ--IEHYGCMVDLLSRAGFLQEAYEFIRNMP---IKP 147
+ + +P+ I + M+ + G Q+A + M +KP
Sbjct: 255 SLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKP 314
Query: 148 NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNG-YHVVLSNIYAE----AERWEDV 202
+ +L C +DL AS +D+ + L+N L ++Y++ + WE
Sbjct: 315 DCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIF 374
Query: 203 ARVRK 207
++K
Sbjct: 375 TAMKK 379
Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 6/144 (4%)
Query: 19 NTLIDMYVKC----GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
N L+++ + C G ++ VF +++E +F W+ MI+GL +A+ + M
Sbjct: 48 NYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRG 107
Query: 75 IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ 134
G PN T +L AC V G + +S+ + G + ++ L +
Sbjct: 108 GGFLPNNFTIPFVLKACARKLDVRLGLK-IHSLLVKAGYDHDVFVKTSLLSLYVKCDNFD 166
Query: 135 EAYEFIRNMPIKPNGVVWGALLGG 158
+A + ++P K N V W A++ G
Sbjct: 167 DALKVFDDIPDK-NVVSWTAIITG 189
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 173/353 (49%), Positives = 239/353 (67%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+H Y N + N V L+DMY KCG + A +VF ME + V W+ +I G+AIHG
Sbjct: 319 HLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHG 378
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
KEA F +M E G++PN +TF+ +L AC H G VDEG++ M++ YGI P++EHY
Sbjct: 379 NVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHY 438
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GC++DLL+RAGFL+EA E I MP++PN GALLGGCR+H N +L E ++L L P
Sbjct: 439 GCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQP 498
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++G +++LSNIYA A++W+D +VR LM+ G+ K PG S I + G+VH FVAGD +HP
Sbjct: 499 CHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHP 558
Query: 241 QAEKIFQMWEKLLDGMKLK-GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
++ KI++ ++ +K GY +T VLLD+EE++KE L HSEKLA+ +GL++
Sbjct: 559 ESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDS 618
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC DCH KLIS++ REI+VRDRNRFH F+ G CSC D+W
Sbjct: 619 KEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 671
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 4/180 (2%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ N +ID YVK + AR VF M R V +W+ MI G AI G+ EAL F++M
Sbjct: 230 RDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQM 289
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+G+KP T + LL AC H+G +D+G + + I +VD+ ++ G
Sbjct: 290 RAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTA-LVDMYAKCGK 348
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ--LDPLNNGYHVVLS 190
+ A + M K + + W ++ G +H N+ A++ +++ + ++P + + +LS
Sbjct: 349 ISLATQVFNAMESK-DVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILS 407
>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
[Vitis vinifera]
Length = 785
Score = 368 bits (944), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 172/350 (49%), Positives = 235/350 (67%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H Y GF + +CN LIDMY KCG + AR VF M+ + +W+AMI G IHG
Sbjct: 436 HGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLG 495
Query: 63 KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC 122
EAL F+ ++ +G+KP+ +TFI LL +C H G V EGR +F +M+ ++ I+P++EH C
Sbjct: 496 MEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCIC 555
Query: 123 MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182
MVD+L RAG + EA+ FIRNMP +P+ +W ALL CR+HKNI+L EE S+++ L P +
Sbjct: 556 MVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPES 615
Query: 183 NGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQA 242
G V+LSNIY+ A RW+D A +R ++ G+KK PG S I ++G+VH FV GD++H Q
Sbjct: 616 TGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQL 675
Query: 243 EKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTP 302
+I + E+LL MK GY S V D+EE+EKE+ L HSEKLA+ FG++N G P
Sbjct: 676 SQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRP 735
Query: 303 IRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I + KNLRVC DCH A K ++ I REI VRD NRFH F+ G+C+CGD+W
Sbjct: 736 ILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 785
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 101/213 (47%), Gaps = 15/213 (7%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ G ++ VC L+D Y KCG L A+R+F M R V W+AMI G +++G
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGL 190
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRR---FFYSMTTEYGIIPQIE 118
+A+ +M E GI PN T +G+L G + G+ + + + G++
Sbjct: 191 CDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTG 250
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL--- 175
++D+ ++ L A + M ++ N V W A++GG + A E Q+
Sbjct: 251 ----LLDMYAKCQCLLYARKIFDVMGVR-NEVSWSAMIGGYVASDCMKEALELFDQMILK 305
Query: 176 DQLDPLNNGYHVVLSNIYAEAERWEDVARVRKL 208
D +DP V L ++ + D++R RKL
Sbjct: 306 DAMDPTP----VTLGSVLRACAKLTDLSRGRKL 334
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 12/167 (7%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y + G +I + NTL+ MY KCG ++ A R F EM + ++SA++ G +G
Sbjct: 333 KLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNG 392
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM-----GWVDEGRRFFYSMTTEYGIIP 115
A AL+ F M GI P+ T +G+L AC H+ G+ G T+ I
Sbjct: 393 NAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLIC- 451
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ S+ G + A E M + + V W A++ G +H
Sbjct: 452 -----NALIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGIH 492
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 90/177 (50%), Gaps = 2/177 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H++ ++ + V + L +Y+ C + ARR+F E+ +V W+ +I+ A +G
Sbjct: 29 KIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNG 88
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A+ ++ M+ +G++PN T+ +L AC + +++G +S +G+ +
Sbjct: 89 PFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE-IHSHAKMFGLESDVFVC 147
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
+VD ++ G L EA +M + + V W A++ GC ++ D A + Q+ +
Sbjct: 148 TALVDFYAKCGILVEAQRLFSSMSHR-DVVAWNAMIAGCSLYGLCDDAVQLIMQMQE 203
>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
Length = 744
Score = 368 bits (944), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 174/351 (49%), Positives = 240/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Q +I + L+DMY+KCG ++ A VF M +R V TW+AMI GLA +G
Sbjct: 394 LHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGM 453
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K AL F +M G +PN V++I +L AC H ++EGR +F M Y I PQIEHYG
Sbjct: 454 GKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYG 513
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CM+DLL R+G L EA + ++ MPI+PN V+W ++L CRVHK+IDLA+ A+ L +L+P
Sbjct: 514 CMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPD 573
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+G +V L NIY ++ +WE+ +++R LM VKKT G+SSITV G VH+FV D++HP+
Sbjct: 574 EDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPR 633
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I M E++ +K GY P TS + +D++E+EKE+ L HSEKLA+ FGL+N P
Sbjct: 634 ILEIIAMLEEISHRLKSLGYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNL 693
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P+ I KNLRVCEDCH+A KLIS + NREI+VRDR+RFH F+ G+CSC D+W
Sbjct: 694 PVHIRKNLRVCEDCHSAIKLISRLWNREIIVRDRSRFHHFREGTCSCNDFW 744
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 84/205 (40%), Gaps = 37/205 (18%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG---------------- 60
V N+LI MY++ G ARR F E+ + W+ +I GLA G
Sbjct: 144 VSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRD 203
Query: 61 ---------------QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFY 105
+A+EA+ F M+ GI P+ VT I +L AC + ++ GR +
Sbjct: 204 VISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRS-LH 262
Query: 106 SMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNI 165
+ E G+ ++D+ ++ G A + + P W A++ G H ++
Sbjct: 263 LLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHV 322
Query: 166 DLA-----EEASRQLDQLDPLNNGY 185
D+A E R + + + GY
Sbjct: 323 DVARSLFDEMEVRDIITFNSMMTGY 347
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 4/174 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N +ID Y K G ++ AR +F EME R + T+++M+ G GQ +EAL F M ++
Sbjct: 310 NAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLR 369
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
+ T + LL AC +G + +GR ++ + + I ++D+ + G + EA
Sbjct: 370 VDNFTVVNLLTACASLGALQQGRA-LHACIEQRLVEADIYLGTALLDMYMKCGRVDEATI 428
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL--DQLDPLNNGYHVVLS 190
+ M K + W A++ G + A E Q+ D P + Y VL+
Sbjct: 429 VFQRMG-KRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLT 481
>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 689
Score = 368 bits (944), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 176/354 (49%), Positives = 238/354 (67%), Gaps = 2/354 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAI 58
R+H+++N G N V L MY KC L AR F I + + W+ MI A
Sbjct: 336 RIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYAS 395
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
HG EA++ F M+ G++P+ VTF+GLL C H G +D G F M T + + P++E
Sbjct: 396 HGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVE 455
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
HY C+VDLL RAG L EA E I MP++ VWGALL CR H+N+++AE A+R+L L
Sbjct: 456 HYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVL 515
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
+P N+G +V+LSN+YAEA WE+V ++R L++ G+KK+PG S I ++G H F+ D++
Sbjct: 516 EPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKS 575
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
HPQA++I++ E L + +K+ GYIP+TS VL DI E+EKE L HSEKLA+ FGL+NT
Sbjct: 576 HPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTR 635
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PG +R+ KNLR+C DCHAA K IS+I REI+VRD NRFHCF+ GSCSCGDYW
Sbjct: 636 PGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 689
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 33/134 (24%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM-------------------- 41
VH + G + V +LIDMYVKCG + AR++F +M
Sbjct: 203 VHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGE 262
Query: 42 -----------EERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG--IKPNGVTFIGLL 88
E R + +W+AMI G +G A++AL F++M++ G +KPN VT + +L
Sbjct: 263 IGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVL 322
Query: 89 HACGHMGWVDEGRR 102
AC ++ GRR
Sbjct: 323 PACAQSAALERGRR 336
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 41/218 (18%), Positives = 91/218 (41%), Gaps = 8/218 (3%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG---QAKEAL 66
G + N + ++ MY G L+ A VF ++ + ++++I+ HG L
Sbjct: 107 GLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXL 166
Query: 67 TSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126
++ +M +G+ + T +L +C + V G R + G+ ++D+
Sbjct: 167 EAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMG-RCVHGQGLRVGLEGDFYVGASLIDM 225
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYH 186
+ G + +A + M ++ + W AL+ G I +AE+ +++ + ++ +
Sbjct: 226 YVKCGVIGDARKLFDKMIVR-DMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVS--WT 282
Query: 187 VVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSIT 224
++S Y + E + M G + P W +I
Sbjct: 283 AMISG-YTQNGFAEQALGLFDEMLQDGSEMKPNWVTIV 319
>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
Length = 1145
Score = 368 bits (944), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 170/348 (48%), Positives = 235/348 (67%), Gaps = 1/348 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G + V N L+ MY KC + + +VF MEER +FTW+ +I G A HG
Sbjct: 571 QIHTIAIKLGMDSGLVVANALVSMYFKCSSAD-SLKVFDSMEERDIFTWNTIITGYAQHG 629
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ + M+ G+ PN VTF+GLLHAC H G VDEG +FF SM+++YG+ P +EHY
Sbjct: 630 LGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHY 689
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG +Q A FI +MPI+P+ V+W ALLG C++HKN+++ A+ +L ++P
Sbjct: 690 ACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSIEP 749
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +V+LSNIY+ W++VA+VRKLM+ GV K PG S + + +H FV GDE H
Sbjct: 750 SNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWMQIKNKMHSFVTGDEEHE 809
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q + I+ +L +K GY+P+T VL DI+E++KE L HSEKLA+ +GL+ TP G
Sbjct: 810 QIQNIYATLWELYTLLKATGYVPDTDFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKG 869
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSC 348
PI+IMKNLR+C DCH K +S + REI VRD NRFH F+ GSCSC
Sbjct: 870 MPIQIMKNLRICGDCHTFIKFVSSVTKREIDVRDGNRFHHFRNGSCSC 917
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 66/158 (41%), Gaps = 11/158 (6%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVK-CGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+H +++GF R++ V +++ Y K L+ A + F M R +TWS +I L+ G
Sbjct: 245 IHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAG 304
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +A + + + GL G +D+ + F + P + +
Sbjct: 305 RIDDAFAVYQRDPLKSVPSRTSMLTGL----ARYGRIDDAKILFDQIHE-----PNVVSW 355
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
M+ + + EA + MP + N + W ++ G
Sbjct: 356 NAMITGYMQNEMVDEAEDLFNRMPFR-NTISWAGMIAG 392
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ NT++ Y +E AR +F M ER +W+ MI G + Q A F M
Sbjct: 155 RDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTM 214
Query: 73 IEIGIKPNGVTFIGLLHACGHMG 95
+ G+ P + +L A H+G
Sbjct: 215 LCEGMTPEQPNLVSVLSAVRHLG 237
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + ++G + N VCN LI +Y K + R++F M + ++++ + L +
Sbjct: 439 QVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNN 498
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE 110
EA FN M P+ V++ ++ AC +E F SM E
Sbjct: 499 LFDEARDVFNNM----PSPDVVSWTTIISACAQADQGNEAVEIFRSMLHE 544
Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 89/198 (44%), Gaps = 14/198 (7%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN N ++ YV+ G + AR++F M R V +W+ M+ G +EA F +M
Sbjct: 124 RNTVAWNAMVTCYVQNGDITLARKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERM 183
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRF--FYSMTTEYGIIPQIEHYGCMVDL---L 127
E NGV++ ++ G++ GR + F +M E G+ P+ + ++ L
Sbjct: 184 PE----RNGVSWTVMI--SGYVLIEQHGRAWDMFRTMLCE-GMTPEQPNLVSVLSAVRHL 236
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV 187
+ G L+ + + + + VV A+L G K++++ + A + + + N
Sbjct: 237 GKPGILESIHVLVHKTGFERDVVVGTAILNG--YTKDVNMLDSAVKFFEGMAARNEYTWS 294
Query: 188 VLSNIYAEAERWEDVARV 205
+ ++A R +D V
Sbjct: 295 TIIAALSQAGRIDDAFAV 312
>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
Length = 635
Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 171/351 (48%), Positives = 239/351 (68%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + +SG + V NT++ MY K G + AR+VF +++R + TW+ M+ A +G
Sbjct: 286 VHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGL 345
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA+ F ++ + GI+ N +TF+ +L AC H G V EG+++F M +Y + P+I+HY
Sbjct: 346 GKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYF-DMMKDYNVEPEIDHYV 404
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
VDLL RAG L+EA F+ MP++P VWGALLG CR+HKN + + A+ + +LDP
Sbjct: 405 SFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPE 464
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G V+L NIYA +W+D ARVRK+M+ GVKK P S + ++ VH FVA D THP+
Sbjct: 465 DTGPPVLLYNIYASTGQWDDAARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTHPK 524
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+E+I++MWE++ +K GY+PNT VLL I+E+E+E L HSEK+AL F L+N P G
Sbjct: 525 SEEIYRMWEEVNTRIKKAGYVPNTDYVLLHIKEQERETKLQYHSEKIALAFALINMPAGA 584
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRIMKN+R+C DCH+AF+ +SE+ REIVVRD NRFH F GSCSCGDYW
Sbjct: 585 TIRIMKNIRICGDCHSAFRYVSEVFKREIVVRDTNRFHHFSNGSCSCGDYW 635
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + ++S + + N+LI MY KCG + AR VF + R V +W+ +I G A +
Sbjct: 84 IHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDM 143
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL M+ +P+G TF L A G G G + +++ +Y + +
Sbjct: 144 PAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQ-MHALAVKYNLDEDVYVGS 202
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ +R + A + K N V W AL+ G
Sbjct: 203 ALLDMYARCQQMDMAIRVFDWLDSK-NEVSWNALIAG 238
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 51/101 (50%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + ++ V + L+DMY +C ++ A RVF ++ + +W+A+I G A G
Sbjct: 184 QMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKG 243
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR 101
+ L F +M G T+ + A +G +++GR
Sbjct: 244 DGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGR 284
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 173/352 (49%), Positives = 252/352 (71%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM-EERTVFTWSAMIQGLAIHG 60
VH ++ ++ + + + LIDMY KCG ++ A +VF + ++ TWSA+I GLA+HG
Sbjct: 278 VHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHG 337
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A++AL F +M + G+ P+ V +IG+L AC H G V+EGR +Y M G++P+IEHY
Sbjct: 338 RARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHY 397
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLL RAG L+EA + I NMP+KP+ V+ ALLG C++H NI++ E ++ L P
Sbjct: 398 GCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGERIAKILMGWYP 457
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++G +V LSN++A WE V +VR M+ L ++K PG S I +DGV+HEF+ D++HP
Sbjct: 458 HDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCSWIELDGVIHEFLVEDDSHP 517
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+AE I M E++ D ++ GY PNT+ VLL+++EKEK+ L+ HSEK+A+ FGL++T P
Sbjct: 518 RAEGIHSMLEEMSDRLRSVGYRPNTTQVLLNMDEKEKQSALHYHSEKIAIAFGLISTRPQ 577
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TP++I+KNLRVCEDCH++ KL+S+I NR+I+VRDR RFH F+ GSCSC DYW
Sbjct: 578 TPLQIVKNLRVCEDCHSSIKLVSKIYNRKIIVRDRKRFHHFENGSCSCMDYW 629
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 3/156 (1%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
Q+ N+ + N +ID YV+ G L +R +F M ++V +W+ MI G A +G KEA+
Sbjct: 183 QTRLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIE 242
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG-CMVDL 126
F+ M + PN VT + +L A +G ++ G+ + + E I + G ++D+
Sbjct: 243 MFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGK--WVHLFAEKNEIEIDDVLGSALIDM 300
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
S+ G + +A + + K N + W A++GG +H
Sbjct: 301 YSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMH 336
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLA-------IHGQAKEALTSFNKMIEIG-IKPNGVTFI 85
AR+ F ++ F+W+ +I+ LA H + EAL F+ M+ G ++PN TF
Sbjct: 68 ARKFFSQIHHPNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFP 127
Query: 86 GLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPI 145
+L AC + ++EG++ + + G++ +V + G +++A+ +
Sbjct: 128 CVLKACAKLARIEEGKQ-LHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRL 186
Query: 146 KPNGVVWGALLGG 158
+ N V+W ++ G
Sbjct: 187 EGNVVLWNVMIDG 199
>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Glycine max]
Length = 676
Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 169/342 (49%), Positives = 234/342 (68%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
F N + LID Y KCG + A+ VF M + ++A+I GLA+ G A F
Sbjct: 335 FLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFG 394
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
+M+++G++P+G TF+GLL C H G VD+G R+F M++ + + P IEHYGCMVDL +RA
Sbjct: 395 QMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARA 454
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190
G L EA + IR+MP++ N +VWGALLGGCR+HK+ LAE +QL +L+P N+G++V+LS
Sbjct: 455 GLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLS 514
Query: 191 NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWE 250
NIY+ + RW++ ++R + G++K PG S + VDGVVHEF+ GD +HP + KI++ E
Sbjct: 515 NIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLE 574
Query: 251 KLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLR 310
L ++ GY P T VL D+EE+EKE FL HSEKLA+ F L++T IR++KNLR
Sbjct: 575 SLFKDLREAGYNPTTEFVLFDVEEEEKEYFLGCHSEKLAVAFALISTGAKDVIRVVKNLR 634
Query: 311 VCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
VC DCH A KL+S++ REI+VRD NRFH F GSCSC DYW
Sbjct: 635 VCGDCHEAIKLVSKVTGREIIVRDNNRFHHFTEGSCSCRDYW 676
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 4/155 (2%)
Query: 5 YSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKE 64
Y +SG N+ V +L+DMY KCG +E ARRVF M E+ V WSA+IQG A +G KE
Sbjct: 228 YMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKE 287
Query: 65 ALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMT-TEYGIIPQIEHYGCM 123
AL F +M ++P+ +G+ AC +G ++ G M E+ P + +
Sbjct: 288 ALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLG--TAL 345
Query: 124 VDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+D ++ G + +A E + M + + VV+ A++ G
Sbjct: 346 IDFYAKCGSVAQAKEVFKGMR-RKDCVVFNAVISG 379
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++GF ++ V L+ +Y K G L AR+VF E+ E+ V +W+A+I G G
Sbjct: 124 LHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGC 183
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL F ++E+G++P+ T + +L+AC +G + G R+ E G + +
Sbjct: 184 FGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASG-RWIDGYMRESGSVGNVFVAT 242
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ ++ G ++EA M ++ + V W AL+ G
Sbjct: 243 SLVDMYAKCGSMEEARRVFDGM-VEKDVVCWSALIQG 278
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 68/149 (45%), Gaps = 1/149 (0%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G ++ + N L+ + + A VF + +F ++ +I+G+ + ++A++ +
Sbjct: 30 GLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVY 89
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
M + G P+ TF +L AC + +S+ + G + +V L S+
Sbjct: 90 ASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSK 149
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
GFL +A + +P K N V W A++ G
Sbjct: 150 NGFLTDARKVFDEIPEK-NVVSWTAIICG 177
>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 829
Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 171/353 (48%), Positives = 240/353 (67%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H S ++GF + + N+L+ MY +CG L A +VF EM + V +W++MI GLA HG
Sbjct: 477 RLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHG 536
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A AL F+ MI G+KPN VT+I +L AC H G V EG+ F M +G+IP++EHY
Sbjct: 537 YAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHY 596
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL R+G +++A +FI MP + + +VW LLG C+ H N+D+ E A+ + QL+P
Sbjct: 597 ACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQLEP 656
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +V+LSN+YAEA W+ VAR+R LMR+ + K G S + VD +HEF AGD +HP
Sbjct: 657 QDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFRAGDTSHP 716
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
QAE+I+ E L+ +K+ GY+P+TSVVL D+ ++ KE L +HSEK+A+ FGL++
Sbjct: 717 QAEEIYTKLETLIREIKVMGYVPDTSVVLHDMSDELKELCLLQHSEKIAVAFGLISCTSA 776
Query: 301 T-PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T PIRI KNLRVC DCH+A K +S+ REI++RD NRFH + G CSCG+YW
Sbjct: 777 TKPIRIFKNLRVCVDCHSALKYVSKATGREIILRDSNRFHRMKDGECSCGEYW 829
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 5/148 (3%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ V LIDM+ K G L RRVF + ERTV W+ +I A G + EA+ F M+
Sbjct: 188 DVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDML 247
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA--- 130
E G +P+ T +L AC +G G++ +S+ G+ +VD+ +++
Sbjct: 248 ENGFQPDQYTLSSMLSACTELGSFRLGQQ-LHSLALRLGLESDSCVSCGLVDMYAKSHNG 306
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGG 158
L A E MP K N + W ALL G
Sbjct: 307 QSLHNAREVFNRMP-KHNVMAWTALLSG 333
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKC---GCLEGARRVFIEMEERTVFTWSAMIQGLA 57
++H + + G + V L+DMY K L AR VF M + V W+A++ G
Sbjct: 276 QLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYV 335
Query: 58 IHG-QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF 103
G Q + + F KM+ GI+PN +T+ +L AC ++G D GR+
Sbjct: 336 QRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQI 382
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEE--RTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
V N+L+ +Y KC + AR VF M R + +W+AM L+ +G EAL F + +E
Sbjct: 86 VANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCLSRNGAEAEALRLFGETLE 145
Query: 75 IGIKPNGVTFIGLLHAC 91
G+ PN T AC
Sbjct: 146 EGLLPNAFTLCAATQAC 162
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + +S V N L+ MY + G +E AR F ++ E+ + ++S + G G
Sbjct: 381 QIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDG---DG 437
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++ + +E+GI TF L+ A +G + +G+R ++++ + G
Sbjct: 438 RSNTYQDYQIERMELGIST--FTFGSLISAAASVGMLTKGQR-LHALSLKAGFGSDRAIG 494
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+V + SR G+L +A + M N + W +++ G H
Sbjct: 495 NSLVSMYSRCGYLVDACQVFDEMN-DHNVISWTSMISGLAKH 535
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 367 bits (943), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 174/346 (50%), Positives = 240/346 (69%)
Query: 7 NQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEAL 66
+++ F N + LIDMY KCG + A +F M+ + W+AM+ GL+++G AK
Sbjct: 343 DRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVF 402
Query: 67 TSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126
+ F+ + + GI+P+ TFIGLL C H G+V+EGR+FF +M + + P IEHYGCMVDL
Sbjct: 403 SLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDL 462
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYH 186
L RAG L EA++ I NMP+KPN VVWGALLGGC++HK+ LAE+ ++L +L+P N+G +
Sbjct: 463 LGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNY 522
Query: 187 VVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIF 246
V LSNIY+ RWE+ ++R M+ ++K S I +DG+VHEF+ GD++H +EKI+
Sbjct: 523 VQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIY 582
Query: 247 QMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIM 306
++L +K G++P T VL DIEE+EKE FL HSEKLA+ FGL+ +PP IR++
Sbjct: 583 AKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVV 642
Query: 307 KNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
KNLRVC DCH A KLIS+I REI++RD NRFH F GSCSC DYW
Sbjct: 643 KNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+ Y + SG RN+ V +L+DMYVKCG LE A +F M E+ + +WS MIQG A +G
Sbjct: 237 IDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGL 296
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL F +M +KP+ T +G+L AC +G +D G + S+ +
Sbjct: 297 PQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLG-IWASSLMDRNEFLSNPVLGT 355
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ S+ G + +A+E M + + VVW A++ G
Sbjct: 356 ALIDMYSKCGSVTQAWEIFTAMK-RKDRVVWNAMMVG 391
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 102/216 (47%), Gaps = 33/216 (15%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++G+ ++ V +L+ +YVKC + A +VF ++ ++ V +W+A+I G G
Sbjct: 135 KIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSG 194
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMG------WVDE-------GRRFFYSM 107
+EA+ +F K++E+G+KP+ + + +L AC +G W+D GR F +
Sbjct: 195 HFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVAT 254
Query: 108 TTE---------------YGIIPQ--IEHYGCMVDLLSRAGFLQEAYEFIRNMP---IKP 147
+ + +P+ I + M+ + G Q+A + M +KP
Sbjct: 255 SLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKP 314
Query: 148 NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183
+ +L C +DL AS +D+ + L+N
Sbjct: 315 DCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSN 350
Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 6/144 (4%)
Query: 19 NTLIDMYVKC----GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
N L+++ + C G ++ VF +++E +F W+ MI+GL +A+ + M
Sbjct: 48 NYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRG 107
Query: 75 IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ 134
G PN T +L AC V G + +S+ + G + ++ L +
Sbjct: 108 GGFLPNNFTIPFVLKACARKLDVRLGLK-IHSLLVKAGYDHDVFVKTSLLSLYVKCDNFD 166
Query: 135 EAYEFIRNMPIKPNGVVWGALLGG 158
+A + ++P K N V W A++ G
Sbjct: 167 DALKVFDDIPDK-NVVSWTAIITG 189
>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
Length = 645
Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 172/350 (49%), Positives = 235/350 (67%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H Y GF + +CN LIDMY KCG + AR VF M+ + +W+AMI G IHG
Sbjct: 296 HGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLG 355
Query: 63 KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC 122
EAL F+ ++ +G+KP+ +TFI LL +C H G V EGR +F +M+ ++ I+P++EH C
Sbjct: 356 MEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCIC 415
Query: 123 MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182
MVD+L RAG + EA+ FIRNMP +P+ +W ALL CR+HKNI+L EE S+++ L P +
Sbjct: 416 MVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPES 475
Query: 183 NGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQA 242
G V+LSNIY+ A RW+D A +R ++ G+KK PG S I ++G+VH FV GD++H Q
Sbjct: 476 TGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQL 535
Query: 243 EKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTP 302
+I + E+LL MK GY S V D+EE+EKE+ L HSEKLA+ FG++N G P
Sbjct: 536 SQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRP 595
Query: 303 IRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I + KNLRVC DCH A K ++ I REI VRD NRFH F+ G+C+CGD+W
Sbjct: 596 ILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 645
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 126/269 (46%), Gaps = 20/269 (7%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H++ ++ + V + L +Y+ C + ARR+F E+ +V W+ +I+ A +G
Sbjct: 29 KIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNG 88
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A+ ++ M+ +G++PN T+ +L AC + +++G +S +G+ +
Sbjct: 89 PFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE-IHSHAKMFGLESDVFVC 147
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+VD ++ G L EA +M + + V W A++ GC ++ D A + Q+ +
Sbjct: 148 TALVDFYAKCGILVEAQRLFSSMSHR-DVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGI 206
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N S I + + RK+ +GV+ WS++ + +VA D
Sbjct: 207 CPNS-----STIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAM-----IGGYVASD-CMK 255
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVL 269
+A IF+M M+L G P+ + +L
Sbjct: 256 EALDIFRM-------MQLSGIDPDLTTML 277
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 12/149 (8%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
+T++ + C CL AR++F M R +WSAMI G KEAL F M GI
Sbjct: 211 STIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGID 270
Query: 79 PNGVTFIGLLHACGHM-----GWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
P+ T +G+L AC H+ G+ G T+ I ++D+ S+ G +
Sbjct: 271 PDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLIC------NALIDMYSKCGKI 324
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
A E M + + V W A++ G +H
Sbjct: 325 SFAREVFNRMD-RHDIVSWNAMIIGYGIH 352
>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
Length = 758
Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 171/351 (48%), Positives = 236/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H +S + G ++ V + LIDMY KCG ++ +R F + + + W+A+I G A+HG+
Sbjct: 408 AHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGK 467
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AKEA+ F+ M G KP+ ++F +L AC G +EG +F SM+++YGI ++EHY
Sbjct: 468 AKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYA 527
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMV LLSRAG L++AY IR MP+ P+ VWGALL CRVH N+ L E A+ +L +L+P
Sbjct: 528 CMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPS 587
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +++LSNIYA W +V RVR +M+N G++K PG S I V VH +AGD++HPQ
Sbjct: 588 NPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQ 647
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I + +KL MK GY P + VL D+EE++KE+ L HSEKLA+ FGL+NTPPG
Sbjct: 648 MTQIIEKLDKLSMEMKKLGYFPEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPPGY 707
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P++++KNLR+C DCH K IS REI VRD NRFH F+ G+CSCGDYW
Sbjct: 708 PLQVIKNLRICGDCHVVIKFISSFERREIFVRDTNRFHHFKEGACSCGDYW 758
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 91/193 (47%), Gaps = 19/193 (9%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH ++ SGF + V ++L+ MY+KC + A RVF M E V +WSA++ A G
Sbjct: 135 QVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQG 194
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM---------TTEY 111
EA F++M + G++PN +++ G++ H G E F M TT
Sbjct: 195 CVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTIS 254
Query: 112 GIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
++P + G + DL+ G L Y + + + V AL+ ++ E
Sbjct: 255 SVLPAV---GDLEDLV--MGILIHGY--VIKQGLVSDKCVSSALID---MYGKCSCTSEM 304
Query: 172 SRQLDQLDPLNNG 184
S+ DQ+D ++ G
Sbjct: 305 SQVFDQMDHMDVG 317
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 89/210 (42%), Gaps = 40/210 (19%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME------------------- 42
+H Y + G + V + LIDMY KC C +VF +M+
Sbjct: 272 IHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQ 331
Query: 43 ----------------ERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIG 86
E V +W++MI + +G+ EAL F +M G+KPN VT
Sbjct: 332 VESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPC 391
Query: 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIK 146
LL ACG++ + G+ + + GI + ++D+ ++ G +Q + +P K
Sbjct: 392 LLPACGNIAALMHGKA-AHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTK 450
Query: 147 PNGVVWGALLGGCRVHKNIDLAEEASRQLD 176
N V W A++ G +H A+EA D
Sbjct: 451 -NLVCWNAVIAGYAMHGK---AKEAMEIFD 476
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 175/351 (49%), Positives = 237/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y ++ G + ++ + L+ MY KCG L+ A +VF M ER V WS MI G AIHG
Sbjct: 230 VHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGH 289
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL F+ M PN VTF +L AC H G V++G + F +M TEY I PQI+HYG
Sbjct: 290 GEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYG 349
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL RAG + A++FI+ MPI+PN V+W LLG C+ H DL E SR++ +LDP
Sbjct: 350 CMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPS 409
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ +V++SN+YA RW V +VR LM++ KK GWSSI ++ +VH+F+ GDE+HP+
Sbjct: 410 SPENYVLVSNVYASLGRWSSVCQVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPE 469
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
EKI+ M ++ +K G++ +T VL DI+E+EKE L HSE+LA+ +GL++TP G+
Sbjct: 470 REKIYGMLHQMARKLKQVGHVNSTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGS 529
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVC DCH KLISE+ NREI+VRDR RFH F+ CSC DYW
Sbjct: 530 PIRIVKNLRVCRDCHEVIKLISEVYNREIIVRDRVRFHHFRERGCSCNDYW 580
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 84/177 (47%), Gaps = 5/177 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G + N LI +Y CGC++ A +F EM E +WS M+ G A +GQ
Sbjct: 129 LHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQ 188
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A EAL F +M + + T ++ CG +G +D G ++ +S + G+ +
Sbjct: 189 AVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLG-KWVHSYMDKEGVKIDVVLGT 247
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+V + S+ G L A + + M + + W ++ G +H + E+A + D +
Sbjct: 248 ALVGMYSKCGSLDNALKVFQGMA-ERDVTAWSTMIAGYAIHGH---GEKALQLFDAM 300
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH 93
A R+F +F W+ +I+G +I A+ + M GI PN TF +L AC
Sbjct: 60 AHRIFSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCK 119
Query: 94 MGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWG 153
+ + EG+ +S + G+ + ++ L + G + A MP +P+ W
Sbjct: 120 LLRLCEGQE-LHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMP-EPDSASWS 177
Query: 154 ALLGG 158
++ G
Sbjct: 178 TMVSG 182
>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 603
Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 168/352 (47%), Positives = 246/352 (69%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+Y+ + F + ++V LIDM+ KCG L+ A +F +M + WSAMI A HG+
Sbjct: 252 IHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGK 311
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A++++ F +M ++P+ +TF+GLL+AC H G V+EGR++F M +++GI+P I+HYG
Sbjct: 312 AEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYG 371
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
MVDLLSRAG L++AYEFI +PI P ++W LL C H N+DLAE+ S ++ +LD
Sbjct: 372 SMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDS 431
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G +V+LSN+YA ++WE V +RK+M++ K PG SSI V+ VVHEF +GD
Sbjct: 432 HGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSA 491
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVL-LDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
K+ + ++++ +KL GY+P+TS+V+ ++ ++EKE L HSEKLA+TFGL+NTPPG
Sbjct: 492 TTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPG 551
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IR++KNLRVC DCH A KLIS I R++V+RD RFH F+ G CSCGD+W
Sbjct: 552 TTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S + G N+ VC TLI+MY +C ++ AR VF + E V ++AMI G A
Sbjct: 150 QLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRN 209
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EAL+ F +M +KPN +T + +L +C +G +D G ++ + ++ ++
Sbjct: 210 RPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG-KWIHKYAKKHSFCKYVKVN 268
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
++D+ ++ G L +A M K + W A++
Sbjct: 269 TALIDMFAKCGSLDDAVSIFEKMRYK-DTQAWSAMI 303
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 100/253 (39%), Gaps = 46/253 (18%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH 93
AR +F M E + +++M +G + E + F +++E GI P+ TF LL AC
Sbjct: 82 ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141
Query: 94 MGWVDEGRRF------------------FYSMTTEYGII------------PQIEHYGCM 123
++EGR+ +M TE + P + Y M
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAM 201
Query: 124 VDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+ +R EA R M +KPN + ++L C + ++DL + + +
Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSF 261
Query: 181 LNN-GYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
+ L +++A+ +D + + MR K T WS++ V H
Sbjct: 262 CKYVKVNTALIDMFAKCGSLDDAVSIFEKMR---YKDTQAWSAMIV---------AYANH 309
Query: 240 PQAEKIFQMWEKL 252
+AEK M+E++
Sbjct: 310 GKAEKSMLMFERM 322
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 367 bits (942), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 173/352 (49%), Positives = 239/352 (67%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y N + N V L+DMY KCG + A +VF ME + V W+ +I G+AIHG
Sbjct: 411 LHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGN 470
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA F +M E G++PN +TF+ +L AC H G VDEG++ M++ YGI P++EHYG
Sbjct: 471 VKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYG 530
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C++DLL+RAGFL+EA E I MP++PN GALLGGCR+H N +L E ++L L P
Sbjct: 531 CVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPC 590
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +++LSNIYA A++W+D +VR LM+ G+ K PG S I + G+VH FVAGD +HP+
Sbjct: 591 HSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPE 650
Query: 242 AEKIFQMWEKLLDGMKLK-GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ KI++ ++ +K GY +T VLLD+EE++KE L HSEKLA+ +GL++
Sbjct: 651 SNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSK 710
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC DCH KLIS++ REI+VRDRNRFH F+ G CSC D+W
Sbjct: 711 EAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 762
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 95/180 (52%), Gaps = 4/180 (2%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ N+++ +VKCG +E A +F EM R V +W++M+ A G+ EAL F++M
Sbjct: 321 RNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQM 380
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+G+KP T + LL AC H+G +D+G + + I +VD+ ++ G
Sbjct: 381 RAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTA-LVDMYAKCGK 439
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ--LDPLNNGYHVVLS 190
+ A + M K + + W ++ G +H N+ A++ +++ + ++P + + +LS
Sbjct: 440 ISLATQVFNAMESK-DVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILS 498
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 74/156 (47%), Gaps = 10/156 (6%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + +SGF + + ++LI +Y L A+++F R V +W+AMI G H +
Sbjct: 217 VHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVE 276
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A F++M+ + +++ +++ +G +DE +R F M + +
Sbjct: 277 MGHARMVFDRMVCRDV----ISWNTMINGYAIVGKIDEAKRLFDEMPER-----NLVSWN 327
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
M+ + G +++A+ MP + + V W ++L
Sbjct: 328 SMLAGFVKCGNVEDAFGLFSEMPCR-DVVSWNSMLA 362
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 29/256 (11%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ N +ID YVK + AR VF M R V +W+ MI G AI G+ EA F++M
Sbjct: 259 RDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEM 318
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E N V++ +L G V++ F M + + M+ ++ G
Sbjct: 319 PE----RNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCR-----DVVSWNSMLACYAQCGK 369
Query: 133 LQEA---YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL-DQLDPLNNGYHVV 188
EA ++ +R + +KP +LL C +D + D +N+
Sbjct: 370 PNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTA 429
Query: 189 LSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQM 248
L ++YA+ + +V M + K W++I +AG H ++ Q+
Sbjct: 430 LVDMYAKCGKISLATQVFNAMES---KDVLAWNTI---------IAGMAIHGNVKEAQQL 477
Query: 249 WEKLLDGMKLKGYIPN 264
+++ MK G PN
Sbjct: 478 FKE----MKEAGVEPN 489
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 367 bits (942), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 166/345 (48%), Positives = 233/345 (67%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
+ G+ V N L+ MY KCG +E A +F EM + + +W+ MI G + HG +EAL
Sbjct: 432 KGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALR 491
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F M G+KP+ T + +L AC H G VD+GR++F++MT +YG+ P +HY CMVDLL
Sbjct: 492 FFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLL 551
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV 187
RAG L+EA+ ++NMP +P+ +WG LLG RVH N +LAE A+ ++ ++P N+G +V
Sbjct: 552 GRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYV 611
Query: 188 VLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQ 247
+LSN+YA + RW DV ++R MR+ GVKK PG+S I + H F GDE HP+ ++IF
Sbjct: 612 LLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFA 671
Query: 248 MWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMK 307
E L MK GY+ TSVVL D+EE+EKE+ + HSE+LA+ +G+M G PIR++K
Sbjct: 672 FLEDLDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIK 731
Query: 308 NLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
NLRVCEDCH A K ++++ R I++RD NRFH F+ GSCSCGDYW
Sbjct: 732 NLRVCEDCHNAIKYMAKVTGRLIILRDNNRFHHFKDGSCSCGDYW 776
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 108/278 (38%), Gaps = 53/278 (19%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ NT+I Y +CG + A+ +F +M +R +W+AMI G + G + EAL F M
Sbjct: 336 RNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLM 395
Query: 73 IEIGIKPNGVTFIGLLHACGHM-----------------------------------GWV 97
G + N +F L C + G +
Sbjct: 396 EREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSI 455
Query: 98 DEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGA 154
+E F M + I + M+ SR GF +EA F +M +KP+ A
Sbjct: 456 EEANDLFKEMAGK-----DIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVA 510
Query: 155 LLGGCRVHKNIDLAEEASRQLDQ---LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRN 211
+L C +D + + Q + P N+ ++ + ++ A E+ LM+N
Sbjct: 511 VLSACSHTGLVDKGRQYFHTMTQDYGVRP-NSQHYACMVDLLGRAGLLEE---AHNLMKN 566
Query: 212 LGVKKTPG-WSSITVDGVVHEFVAGDETHPQAEKIFQM 248
+ + W ++ VH ET A+KIF M
Sbjct: 567 MPFEPDAAIWGTLLGASRVHGNTELAET--AADKIFAM 602
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 16/149 (10%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ NT+I Y + G ++ AR++F E VFTW+AM+ G + +EA F++M
Sbjct: 243 RDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRM 302
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE-YGIIP--QIEHYGCMVDLLSR 129
E N V++ +L G+V +G R M E + ++P + + M+ ++
Sbjct: 303 PE----RNEVSWNAML-----AGYV-QGERV--EMAKELFDVMPCRNVSTWNTMITGYAQ 350
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
G + EA MP K + V W A++ G
Sbjct: 351 CGKISEAKNLFDKMP-KRDPVSWAAMIAG 378
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 96/212 (45%), Gaps = 18/212 (8%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ NT++ Y + GC++ ARRVF M E+ +W+A++ + + +EA F
Sbjct: 150 RDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSR 209
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ V++ LL + E R+FF SM + + + ++ ++ G
Sbjct: 210 ENWAL----VSWNCLLGGFVKKKKIVEARQFFDSMK-----VRDVVSWNTIITGYAQNGE 260
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN-GYHVVLSN 191
+ EA + P+ + W A++ G ++ + EEA D++ N ++ +L+
Sbjct: 261 IDEARQLFDESPVH-DVFTWTAMVSGYIQNR---MVEEARELFDRMPERNEVSWNAMLAG 316
Query: 192 IYAEAERWEDVARVRKLMRNLGVKKTPGWSSI 223
Y + ER V ++L + + W+++
Sbjct: 317 -YVQGER---VEMAKELFDVMPCRNVSTWNTM 344
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 14/171 (8%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ N +I YV+ L AR +F M ER V +W+ ++ G A +G +A F++M
Sbjct: 119 RDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRM 178
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E N V++ LL A ++E F S + ++ + C++ +
Sbjct: 179 PE----KNDVSWNALLSAYVQNSKLEEACVLFGSREN-WALVS----WNCLLGGFVKKKK 229
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183
+ EA +F +M ++ + V W ++ G + ID A RQL P+++
Sbjct: 230 IVEARQFFDSMKVR-DVVSWNTIITGYAQNGEIDEA----RQLFDESPVHD 275
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 367 bits (942), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 175/353 (49%), Positives = 244/353 (69%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM-EERTVFTWSAMIQGLAIHG 60
+H + +SGF + V N L+D Y KCG + AR VF M E+R++ +W++MI GLA+HG
Sbjct: 291 LHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHG 350
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ F++M E GI+P+G+ FI +L+AC H G +++G +FY M Y I P IEHY
Sbjct: 351 YGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHY 410
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDL RAG L +AYEFI +MP+ P ++W LLG C +H N+ LAE +L +LDP
Sbjct: 411 GCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERVKERLSELDP 470
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G HV+LSNIYA A +W+DVA VR+ M + + KTPGWS I VD +++ FVAG+ +
Sbjct: 471 NNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMIEVDKIMYSFVAGEVQNS 530
Query: 241 QAEKIFQMWEKLLDGMKLKG-YIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
E+ ++ ++++ ++++G YIP VL DIE++EKE + RHSEKLA+ FG+
Sbjct: 531 ITEEAYEKLKEIMLKLRVEGCYIPEVGSVLHDIEDEEKEDSVSRHSEKLAVAFGIARLCK 590
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G+ IRI+KNLRVC DCH KLIS++ EIVVRDR+RFH F+ GSCSC DYW
Sbjct: 591 GSIIRIVKNLRVCRDCHTVMKLISKVYGLEIVVRDRSRFHSFKTGSCSCRDYW 643
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 77/150 (51%), Gaps = 1/150 (0%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ N ++ Y K G LE AR++F+EM + +WS MI G A +G EA F ++
Sbjct: 201 RNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFREL 260
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
++G++PN V+ G L AC G ++ G + + + G + + ++D S+ G
Sbjct: 261 QQVGMRPNEVSLTGALSACADAGAIEFG-KILHGFIEKSGFLWMVSVNNALLDTYSKCGN 319
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ A MP K + V W +++ G +H
Sbjct: 320 VGMARLVFERMPEKRSIVSWTSMIAGLAMH 349
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 12/153 (7%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G ++ V TL+ MY +CG + A++VF EM E V W+A++ G K A F
Sbjct: 136 GLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMF 195
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
N+M + V G A G ++ R+ F M + + + M+ +
Sbjct: 196 NRMPFRNLTSWNVMLAGYTKA----GELELARKLFLEMPVKDDV-----SWSTMIVGFAH 246
Query: 130 AGFLQEAYEFIRNMP---IKPNGVVWGALLGGC 159
GF EA+ F R + ++PN V L C
Sbjct: 247 NGFFYEAFGFFRELQQVGMRPNEVSLTGALSAC 279
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 101/235 (42%), Gaps = 16/235 (6%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLI--DMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAI 58
+VH Y ++G + + L+ L+ ARR+F+ VF + +I+GLA
Sbjct: 23 QVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNPDVFMHNTLIRGLAE 82
Query: 59 HGQAKEALTSFNKMIEIGIKP-NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
+ +L +F +M P + +F LL A ++ G + + +G+ +
Sbjct: 83 SDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQ-LHCQAIVHGLDTHL 141
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
+V + S GF+ A + M +PN V W A++ C ++ A+ ++
Sbjct: 142 FVGTTLVSMYSECGFVAFAKKVFEEM-FEPNVVAWNAVVTACFRCGDVKGADMMFNRM-- 198
Query: 178 LDPLNN--GYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVH 230
P N ++V+L+ Y +A E RKL + VK WS++ V G H
Sbjct: 199 --PFRNLTSWNVMLAG-YTKAGELE---LARKLFLEMPVKDDVSWSTMIV-GFAH 246
>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Glycine max]
Length = 820
Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 172/352 (48%), Positives = 237/352 (67%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SGF N+ + N LI MY KCG E A +VF +M R V TW+++I G A HG
Sbjct: 469 QIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHG 528
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A +AL F +M+EIG+KPN VT+I +L AC H+G +DE + F SM + I P++EHY
Sbjct: 529 FATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHY 588
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL R+G L EA EFI +MP + +VW LG CRVH+N L E A++++ + +P
Sbjct: 589 ACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREP 648
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +++LSN+YA RW+DVA +RK M+ + K G+S I VD VH+F GD +HP
Sbjct: 649 HDPATYILLSNLYASEGRWDDVAALRKSMKQKKLIKETGYSWIEVDNQVHKFHVGDTSHP 708
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
QA KI+ ++L +K GYIPNT VL D+E+++KE++L++HSEK+A+ + L++TP
Sbjct: 709 QARKIYDELDELALKIKNLGYIPNTDFVLHDVEDEQKEQYLFQHSEKIAVAYALISTPKP 768
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLRVC DCH A K IS + REIVVRD NRFH + G CSC DYW
Sbjct: 769 KPIRVFKNLRVCGDCHTAIKYISIVTGREIVVRDANRFHHIKDGKCSCNDYW 820
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 72/137 (52%), Gaps = 3/137 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + +SG ++ V TL+DMY K +E +R++F M V +W+A+I G
Sbjct: 269 QLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSR 328
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q +EA+ F M+ + PN TF +L AC + G++ + T + G + I
Sbjct: 329 QEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQ-LHGQTIKLG-LSTINCV 386
Query: 121 G-CMVDLLSRAGFLQEA 136
G ++++ +R+G ++ A
Sbjct: 387 GNSLINMYARSGTMECA 403
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 7/161 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM--EERTVFTWSAMIQGLAIH 59
+H SG + + N+LI +Y KCG E A +F M +R + +WSA+I A +
Sbjct: 61 LHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANN 120
Query: 60 GQAKEALTSFNKMIEIG---IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ 116
AL +F M++ I PN F LL +C + + G F + + G
Sbjct: 121 SMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIF-AFLLKTGYFDS 179
Query: 117 IEHYGC-MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
GC ++D+ ++ G ++ + + N V W ++
Sbjct: 180 HVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMI 220
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 72/147 (48%), Gaps = 6/147 (4%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE-I 75
V N+LI+MY + G +E AR+ F + E+ + +++ + +A ++ SFN +E
Sbjct: 386 VGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADA---NAKALDSDESFNHEVEHT 442
Query: 76 GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE 135
G+ + T+ LL +G + +G + +++ + G + ++ + S+ G +
Sbjct: 443 GVGASPFTYACLLSGAACIGTIVKGEQ-IHALIVKSGFGTNLCINNALISMYSKCGNKEA 501
Query: 136 AYEFIRNMPIKPNGVVWGALLGGCRVH 162
A + +M + N + W +++ G H
Sbjct: 502 ALQVFNDMGYR-NVITWTSIISGFAKH 527
>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 781
Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 166/345 (48%), Positives = 233/345 (67%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
+ G+ V N L+ MY KCG +E A +F EM + + +W+ MI G + HG + AL
Sbjct: 437 KGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALR 496
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F M G+KP+ T + +L AC H G VD+GR++FY+MT +YG++P +HY CMVDLL
Sbjct: 497 FFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLL 556
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV 187
RAG L++A+ ++NMP +P+ +WG LLG RVH N +LAE A+ ++ ++P N+G +V
Sbjct: 557 GRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYV 616
Query: 188 VLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQ 247
+LSN+YA + RW DV ++R MR+ GVKK PG+S I + H F GDE HP+ ++IF
Sbjct: 617 LLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFA 676
Query: 248 MWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMK 307
E+L MK GY+ TSVVL D+EE+EKE+ + HSE+LA+ +G+M G PIR++K
Sbjct: 677 FLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIK 736
Query: 308 NLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
NLRVCEDCH A K ++ I R I++RD NRFH F+ GSCSCGDYW
Sbjct: 737 NLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 108/278 (38%), Gaps = 53/278 (19%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ NT+I Y +CG + A+ +F +M +R +W+AMI G + G + EAL F +M
Sbjct: 341 RNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQM 400
Query: 73 IEIGIKPNGVTFIGLLHACGHM-----------------------------------GWV 97
G + N +F L C + G +
Sbjct: 401 EREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSI 460
Query: 98 DEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGA 154
+E F M + I + M+ SR GF + A F +M +KP+ A
Sbjct: 461 EEANDLFKEMAGK-----DIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVA 515
Query: 155 LLGGCRVHKNIDLAEEASRQLDQ---LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRN 211
+L C +D + + Q + P N+ ++ + ++ A ED LM+N
Sbjct: 516 VLSACSHTGLVDKGRQYFYTMTQDYGVMP-NSQHYACMVDLLGRAGLLED---AHNLMKN 571
Query: 212 LGVKKTPG-WSSITVDGVVHEFVAGDETHPQAEKIFQM 248
+ + W ++ VH ET A+KIF M
Sbjct: 572 MPFEPDAAIWGTLLGASRVHGNTELAET--AADKIFAM 607
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 16/149 (10%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ NT+I Y + G ++ AR++F E + VFTW+AM+ G + +EA F+KM
Sbjct: 248 RDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKM 307
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE-YGIIP--QIEHYGCMVDLLSR 129
E N V++ +L G+V +G R M E + ++P + + M+ ++
Sbjct: 308 PE----RNEVSWNAML-----AGYV-QGERM--EMAKELFDVMPCRNVSTWNTMITGYAQ 355
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
G + EA MP K + V W A++ G
Sbjct: 356 CGKISEAKNLFDKMP-KRDPVSWAAMIAG 383
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 88/189 (46%), Gaps = 15/189 (7%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ NT++ Y + GC++ AR VF M E+ +W+A++ + + +EA F
Sbjct: 155 RDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSR 214
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ V++ LL + E R+FF SM + + + ++ +++G
Sbjct: 215 ENWAL----VSWNCLLGGFVKKKKIVEARQFFDSMN-----VRDVVSWNTIITGYAQSGK 265
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN-GYHVVLSN 191
+ EA + P++ + W A++ G ++ + EEA D++ N ++ +L+
Sbjct: 266 IDEARQLFDESPVQ-DVFTWTAMVSGYIQNR---MVEEARELFDKMPERNEVSWNAMLAG 321
Query: 192 IYAEAERWE 200
Y + ER E
Sbjct: 322 -YVQGERME 329
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 14/171 (8%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ N +I YV+ L AR +F M ER V +W+ M+ G A +G +A + F++M
Sbjct: 124 RDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRM 183
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E N V++ LL A ++E F S + ++ + C++ +
Sbjct: 184 PE----KNDVSWNALLSAYVQNSKMEEACMLFKSREN-WALVS----WNCLLGGFVKKKK 234
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183
+ EA +F +M ++ + V W ++ G ID A RQL P+ +
Sbjct: 235 IVEARQFFDSMNVR-DVVSWNTIITGYAQSGKIDEA----RQLFDESPVQD 280
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 112/249 (44%), Gaps = 29/249 (11%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH---GQAKEALTSFNKMIEI 75
N +I Y++ G E AR++F EM ER + +W+ MI+G + G+A+E + EI
Sbjct: 99 NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARE-------LFEI 151
Query: 76 GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE 135
+ + ++ +L G VD+ R F M + + + ++ + ++E
Sbjct: 152 MPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDV-----SWNALLSAYVQNSKMEE 206
Query: 136 AYEFIRNMPIKPNG--VVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIY 193
A ++ + N V W LLGG K I A + ++ D ++ ++ +++ Y
Sbjct: 207 ACMLFKS---RENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVS--WNTIITG-Y 260
Query: 194 AEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLL 253
A++ + + R+L V+ W+++ + + V +E +K+ + E
Sbjct: 261 AQSGK---IDEARQLFDESPVQDVFTWTAMVSGYIQNRMV--EEARELFDKMPERNEVSW 315
Query: 254 DGMKLKGYI 262
+ M L GY+
Sbjct: 316 NAM-LAGYV 323
>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 674
Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 172/354 (48%), Positives = 246/354 (69%), Gaps = 2/354 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAI 58
++H Y + GF N + ++L+DMY KCG ++ AR +F IEM +R + +W+A+I G A+
Sbjct: 321 QLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAM 380
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
HG A +A++ F +M+ G+KP V F+ +L AC H G VDEG ++F SM ++G+ P +E
Sbjct: 381 HGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLE 440
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
HY + DLL RAG L+EAY+FI NM +P G VW LL CR HKNI+LAE+ ++ +
Sbjct: 441 HYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLV 500
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
DP N G HV++SNIY+ A+RW D A++R MR G+KKTP S I V VH F+AGD++
Sbjct: 501 DPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKS 560
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
HP +KI + LL+ M+ +GY+ +T+ VL D++E+ K L HSE+LA+ FG+++T
Sbjct: 561 HPYYDKINEALNILLEQMEKEGYVLDTNEVLHDVDEEHKRDLLRTHSERLAIAFGIISTT 620
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GT IR++KN+RVC DCH A K +++IV REI+VRD +RFH F+ GSCSCGDYW
Sbjct: 621 SGTTIRVIKNIRVCVDCHTAIKFMAKIVGREIIVRDNSRFHHFKNGSCSCGDYW 674
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 107/223 (47%), Gaps = 10/223 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ + GF +++ + ++LIDMY KC +E + F + R +W+++I G +G+
Sbjct: 221 IHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGR 280
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ L F +M++ +KP V+F ++ AC H+ ++ G++ ++ G
Sbjct: 281 FDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQ-LHAYIIRLGFDDNKFIAS 339
Query: 122 CMVDLLSRAGFLQEA-YEFIRNMPIKPNGVVWGALLGGCRVHKN----IDLAEEASRQLD 176
++D+ ++ G ++ A Y F + + V W A++ GC +H + + L EE +D
Sbjct: 340 SLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEM--LVD 397
Query: 177 QLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPG 219
+ P + VL+ E + R+ GV PG
Sbjct: 398 GVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGV--APG 438
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 60/132 (45%), Gaps = 8/132 (6%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90
++ R++F M R V +W+ +I G A +G +EAL +M + ++P+ T +L
Sbjct: 149 IDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPI 208
Query: 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE---AYEFIRNMPIKP 147
V +G+ + +G + ++D+ ++ ++ A+ + N
Sbjct: 209 FTEHANVTKGKE-IHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNR---- 263
Query: 148 NGVVWGALLGGC 159
+ + W +++ GC
Sbjct: 264 DAISWNSIIAGC 275
>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Cucumis sativus]
Length = 614
Score = 367 bits (941), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 174/351 (49%), Positives = 241/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H Y ++ + + + L+DMY KCG ++ A +VF EM E+ V+TWS I GLA++G
Sbjct: 264 AHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGY 323
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++ L F+ M GI PN +TFI +L C +G+VDEGR F SM ++GI P++EHYG
Sbjct: 324 GQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRLEHYG 383
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL RAG L+EA FI MP+KP+ WGALL CR++KN++L E ASR+L +++
Sbjct: 384 CMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIEVEGK 443
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +V LSNIYA+ W+ V+ VR+ M+ G+ K PG S + V+G VHEF +GD++HP
Sbjct: 444 NHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVNGEVHEFFSGDKSHPS 503
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ I MW ++ +KL GY+ +T+ VL DIEE+EKE L +HSEK+A+ FGL + G
Sbjct: 504 YDVIETMWGEISKRLKLAGYVASTNSVLFDIEEEEKEDALCKHSEKMAIAFGLFSLKEGL 563
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLR+C DCH K+IS+I REI+VRDRNRFH F+ G CSC D+W
Sbjct: 564 PIRIVKNLRICWDCHDVSKMISKIFEREIIVRDRNRFHHFKDGECSCKDFW 614
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 3/143 (2%)
Query: 17 VC-NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEI 75
VC T++ KCG + AR +F M +R +W+AMI G A GQ++EAL F M
Sbjct: 177 VCQTTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMD 236
Query: 76 GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE 135
G+K N V+ I ++ AC H+G +D+G ++ ++ + I + +VD+ + G +
Sbjct: 237 GVKVNEVSMISVVTACTHLGALDQG-KWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDR 295
Query: 136 AYEFIRNMPIKPNGVVWGALLGG 158
A + M K N W +GG
Sbjct: 296 ALKVFWEMNEK-NVYTWSTAIGG 317
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 367 bits (941), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 171/353 (48%), Positives = 243/353 (68%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R HEY +S N+ + L+DMY +CG +E A RVF E+ ++ +WS++I+GLA+HG
Sbjct: 272 RAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHG 331
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A +A+ F++M+ +G P +T +L AC H G VD+G + +M +YGI P++EHY
Sbjct: 332 HAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEHY 391
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GC+VD+L RAG L EA FI MP+KPN + GALLG C+++KN ++AE L ++ P
Sbjct: 392 GCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYKNTEVAERVGNMLIEVKP 451
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAG-DETH 239
++GY+V+LSNIYA A +WE + +R +M+ VKK PGWS I +DG +++F G D+ H
Sbjct: 452 EHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLIEIDGKINKFSMGDDQKH 511
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ KI ++WE++L ++L GY NT D++E+EKE ++ HSEKLA+ +G+M T
Sbjct: 512 PEMGKIKRLWEEILGKIRLIGYKGNTGDAFFDVDEEEKETAIHMHSEKLAIAYGMMKTKT 571
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GT IRI+KNLRVCEDCH A KLISE+ RE +VRDRNRFH F+ G CSC DYW
Sbjct: 572 GTTIRIVKNLRVCEDCHTATKLISEVYGREFIVRDRNRFHHFRNGLCSCRDYW 624
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 2/166 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ +++ Y KCG +E AR +F EM R +FTWS MI G A + ++A+ F M
Sbjct: 183 RDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELM 242
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
G+ N + ++ +C H+G ++ G R + + + I +VD+ R G
Sbjct: 243 KREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTA-LVDMYWRCGE 301
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+++A +P K + + W +++ G VH + A Q+ +L
Sbjct: 302 IEKAIRVFEELPDK-DSLSWSSIIKGLAVHGHAHKAIHYFSQMVRL 346
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 82/182 (45%), Gaps = 7/182 (3%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH 93
A +F +++ +F ++ +I+ + + +A + +M++ I P+ +TF L+ A
Sbjct: 72 AYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTE 131
Query: 94 MGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWG 153
M V G + +S +G + +V + + G + A MP + + V W
Sbjct: 132 MECVVVGEQT-HSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFR-DVVSWT 189
Query: 154 ALLGG-CRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212
+++ G C+ + E+A D++ N ++ N YA+ +E + +LM+
Sbjct: 190 SMVAGYCKC----GMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKRE 245
Query: 213 GV 214
GV
Sbjct: 246 GV 247
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 367 bits (941), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 177/347 (51%), Positives = 245/347 (70%), Gaps = 1/347 (0%)
Query: 7 NQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEAL 66
++ G + ++ V + LIDMY KCG + A RVF M+ER V+++S+MI G A+HG+ +A+
Sbjct: 308 SEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAM 367
Query: 67 TSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126
F++M++ IKPN VTFIG+L AC H G V++G + F M YGI P +HY CMVDL
Sbjct: 368 KLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDL 427
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYH 186
L RAG LQEA+E ++ MPI+P+G VWGALLG CR+HK+ D+A A+ L +L+P G +
Sbjct: 428 LGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAANHLFELEPYCIGNY 487
Query: 187 VVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD-GVVHEFVAGDETHPQAEKI 245
++L+NIYA RW DV+ VRKLMR G++K P +S I + G+VHEF +GD THP++ +I
Sbjct: 488 ILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGMVHEFFSGDMTHPRSGEI 547
Query: 246 FQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRI 305
Q E LLD ++ KGY P+ S V D+ +++K + L HSEKLAL FGL++T PG+ IRI
Sbjct: 548 KQALEDLLDRLEAKGYQPHLSSVSYDVNDEDKRRILMTHSEKLALAFGLISTIPGSKIRI 607
Query: 306 MKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+KNLR+CEDCH+ S+I REI+VRD RFH F G CSCG++W
Sbjct: 608 VKNLRICEDCHSVICGASQITGREIIVRDIMRFHHFHDGICSCGNFW 654
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 93/202 (46%), Gaps = 47/202 (23%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWS------------------- 50
GF ++ V N++IDMY+KCG LE R+VF EM R V +W+
Sbjct: 177 GFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELF 236
Query: 51 ------------AMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMG--- 95
M+ G A + + +EA+ F KM E G++ + +T IG++ AC +G
Sbjct: 237 DGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAK 296
Query: 96 ---WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKP----N 148
W+ + + +E+G + ++D+ S+ G + +AY + M + +
Sbjct: 297 YADWIRD-----VAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYS 351
Query: 149 GVVWGALLGGCRVHKNIDLAEE 170
++ G + G RVH + L +E
Sbjct: 352 SMILGFAMHG-RVHDAMKLFDE 372
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 87/194 (44%), Gaps = 10/194 (5%)
Query: 37 VFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGW 96
+F ++ F ++A+I+G I + KE+ ++ M + G+ P TF L ACG
Sbjct: 102 IFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMD 161
Query: 97 VDEGRRFFYSMTTEYGIIPQIEHYG-CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGAL 155
V GR+ + T G + H G M+D+ + GFL+ + MP + + + W L
Sbjct: 162 VGLGRQ-IHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNR-DVISWTEL 219
Query: 156 LGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVK 215
+ N++ A E L D + + V++S A+ E + K M+ GV+
Sbjct: 220 ISAYVKSGNMESAGELFDGLPVKDMV--AWTVMVSGFAQNAKPREAIMFFEK-MQEFGVE 276
Query: 216 KTPGWSSITVDGVV 229
IT+ GV+
Sbjct: 277 T----DEITLIGVI 286
>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 596
Score = 367 bits (941), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 175/353 (49%), Positives = 244/353 (69%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIH 59
RVH ++++ G N V N LID+Y KCG +E A +VF EM RTV +W+++I GLA +
Sbjct: 244 RVHVFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGN 303
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G K+AL F M + P +T +G+L+AC H G VD+G R+F M +YGI P IEH
Sbjct: 304 GFGKDALELFGLMERERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPGIEH 363
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
GCMVDLL RAG ++EA+ +I MP++PN VVW LLG C +HK ++L E A +L +LD
Sbjct: 364 LGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLLGACAMHKKLELGEAAWARLVELD 423
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P ++G +V+LSN+YA RW D +RK M GV+K PG S + + V+EFV GD +H
Sbjct: 424 PGHSGDYVLLSNLYAAVGRWADAHVLRKTMATHGVRKNPGHSLVELRNSVYEFVMGDRSH 483
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P++++I+Q ++ + ++ +GY+P TS VL DIEE+EKE L HSE+LA+ F L+ + P
Sbjct: 484 PESDQIYQTLAEIAERLRCQGYVPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLP 543
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G+PIRI+KNLR+C DCH KLIS++ +REI+VRDR+RFH F+ G CSC DYW
Sbjct: 544 GSPIRIVKNLRMCGDCHLVIKLISKVYDREIIVRDRSRFHHFKGGECSCKDYW 596
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 86/159 (54%), Gaps = 3/159 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME--ERTVFTWSAMIQGLAIH 59
+H + ++G + V N+L+ Y CG E A RVF E+ ER + +W++++ G A +
Sbjct: 142 LHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGFAAN 201
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G+ E LT F + +E + P+G T + +L AC +G + GRR + ++ G++
Sbjct: 202 GRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRR-VHVFASKVGLVGNSHV 260
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++DL ++ G +++A++ M + V W +L+ G
Sbjct: 261 GNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVG 299
>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
Length = 824
Score = 367 bits (941), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 172/352 (48%), Positives = 232/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++G+ V N L+ MY KCG +E A F EMEER V +W+ MI G A HG
Sbjct: 473 QLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHG 532
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
KEAL F+ M + KP+ +T +G+L AC H G V++G +FYSM ++G+ + EHY
Sbjct: 533 FGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHY 592
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DLL RAG L EA +++MP +P+ +WGALLG R+H+N +L A+ ++ +L+P
Sbjct: 593 TCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEP 652
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +V+LSNIYA + +W DV ++R +M GVKK PG+S I V VH F GD HP
Sbjct: 653 ENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHP 712
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ E I+ E L MK GY+ T +VL D+EE+EKE L HSEKLA+ +G++ PPG
Sbjct: 713 EREDIYAFLEDLDIRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILKIPPG 772
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR++KNLRVC DCH AFK IS I R I++RD NRFH F+ GSCSCGDYW
Sbjct: 773 RPIRVIKNLRVCRDCHTAFKCISAIEGRLIILRDSNRFHHFRDGSCSCGDYW 824
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 13/159 (8%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+R++ NT++ Y + G + ARR+F R VFTW+A++ G A +G +EA F+
Sbjct: 290 QRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDA 349
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M + N V++ ++ A ++E + F +M + + M+ ++AG
Sbjct: 350 MPD----KNAVSWNAMMAAYVQRRMMEEAKELFDAMPCR-----NVASWNTMLTGYAQAG 400
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
L EA MP K + V W A+L + I +EE
Sbjct: 401 MLDEARAIFGMMPQK-DAVSWAAMLAA---YSQIGFSEE 435
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 13/178 (7%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N ++ YV+ G ++ AR +F E +W+A++ G Q +EA FNKM + +
Sbjct: 235 NGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDV- 293
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
V++ ++ G + E RR F + I + + +V ++ G L+EA
Sbjct: 294 ---VSWNTMVSGYARRGDMAEARRLF-----DVAPIRDVFTWTAIVSGYAQNGMLEEAKR 345
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
MP K N V W A++ + + EEA D + N + YA+A
Sbjct: 346 VFDAMPDK-NAVSWNAMMAA---YVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQA 399
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 14/156 (8%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ NT++ Y + G L+ AR +F M ++ +W+AM+ + G ++E L F +M
Sbjct: 384 RNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEM 443
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE-YGIIPQIEHYGCMVD--LLS- 128
G N F +L C + ++ G + + YG+ GC V LL+
Sbjct: 444 GRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGV-------GCFVGNALLAM 496
Query: 129 --RAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ G ++EA+ M + + V W ++ G H
Sbjct: 497 YFKCGSMEEAHSAFEEMEER-DVVSWNTMIAGYARH 531
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 94/212 (44%), Gaps = 16/212 (7%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
RR+ NT++ Y G L A F + F+++ ++ L + + F+
Sbjct: 135 RRSTSTYNTMLAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHALGVSSSLADVRALFD- 193
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
E+ +K + V++ ++ + + G V R +F + E + + M+ R G
Sbjct: 194 --EMPVK-DSVSYNVMISSHANHGLVSLARHYF-DLAPEKDAV----SWNGMLAAYVRNG 245
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSN 191
+QEA E + + + + W AL+ G I+ A++ ++ Q D ++ ++ ++S
Sbjct: 246 RIQEARELF-DSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVS--WNTMVSG 302
Query: 192 IYAEAERWEDVARVRKLMRNLGVKKTPGWSSI 223
YA R D+A R+L ++ W++I
Sbjct: 303 -YA---RRGDMAEARRLFDVAPIRDVFTWTAI 330
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 367 bits (941), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 172/352 (48%), Positives = 243/352 (69%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y ++ R + + LIDMY KCG + A VF ++ ++V W+A+I G A HG
Sbjct: 298 IHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGH 357
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA++ F +M ++GIKPN +TF +L AC + G V+EG+ FY+M +Y + P IEHYG
Sbjct: 358 GREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYG 417
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLLSRAG L EA FI+ MP+KPN V+WGALL CR+HKNI+L EE L +DP
Sbjct: 418 CVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPY 477
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G +V +NI+A ++W+ A R+LM+ GV K PG S+I+++G HEF+AGD +HP+
Sbjct: 478 HGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPE 537
Query: 242 AEKIFQMWEKLLDGMKLKGYIPN-TSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
EKI W+ + ++ GY+P ++L +++ E+E +++HSEKLA+T+GL+ T PG
Sbjct: 538 IEKIQSKWKIMRRKLEENGYVPELEDMLLDLVDDDERETIVHQHSEKLAITYGLIKTKPG 597
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IRIMKNLRVC+DCH KLIS+I R+IV+RDR RFH F+ G CSCGDYW
Sbjct: 598 TTIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 649
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 4/145 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N++I Y K G ++ A +F +M E+ +W+ MI G G KEAL F++M ++
Sbjct: 214 NSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVE 273
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC-MVDLLSRAGFLQEAY 137
P+ V+ L AC +G +++G+ +T + + GC ++D+ ++ G + EA
Sbjct: 274 PDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSV--LGCVLIDMYAKCGDMGEAL 331
Query: 138 EFIRNMPIKPNGVVWGALLGGCRVH 162
E +N+ K + W AL+ G H
Sbjct: 332 EVFKNIQRK-SVQAWTALISGYAYH 355
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 67/145 (46%), Gaps = 2/145 (1%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90
L A+ VF + F W+ MI+G + + + +L + +M+ N TF LL A
Sbjct: 94 LPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKA 153
Query: 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGV 150
C ++ ++E + ++ T+ G + +++ + G + A+ +P KP+ V
Sbjct: 154 CSNLSALEETTQ-IHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIP-KPDAV 211
Query: 151 VWGALLGGCRVHKNIDLAEEASRQL 175
W +++ G +D+A R++
Sbjct: 212 SWNSVIKGYAKAGKMDIALTLFRKM 236
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 171/351 (48%), Positives = 235/351 (66%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + ++ + L+DM+ +CG + A +VF +M +R V W+A I +A+ G
Sbjct: 495 IHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGN 554
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+ F++M++ GIKP+GV F+ LL A H G V++G F SM YGI PQ HYG
Sbjct: 555 GTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYG 614
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L EA I +M ++PN V+WG+LL CRVHKN+D+A A+ ++ +LDP
Sbjct: 615 CMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELDPE 674
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
G HV+LSNIYA A RW+DVA+VR ++ G K PG SSI ++G + EF GDE+HP+
Sbjct: 675 RTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGDESHPE 734
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
I M +++ ++ GY+P+ + VLLD+ EKEKE L RHSEKLA+ F L++T G
Sbjct: 735 MTHIEPMLKEICCRLRDIGYVPDLTNVLLDVNEKEKEYLLSRHSEKLAIAFALISTGQGM 794
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLR+C DCH+ KL+S+ +REI+VRD NRFH FQ G CSCGDYW
Sbjct: 795 PIRVAKNLRICSDCHSFAKLVSKSYSREIIVRDNNRFHFFQQGFCSCGDYW 845
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 63/94 (67%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + GF R++ V N+LI Y +CG ++ RRVF +M ER V +W+++I G A G
Sbjct: 160 QVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRG 219
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM 94
KEA++ F +M+E+GI+PN VT +G++ AC +
Sbjct: 220 CYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKL 253
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 37/207 (17%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H Y ++G VCN +I+MY+KCG E A RVF M +T +W+++I G +G
Sbjct: 364 HGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDM 423
Query: 63 KEA-----------LTSFNKMIEI--------------------GIKPNGVTFIGLLHAC 91
+ A L S+N MI GI + VT +G+ AC
Sbjct: 424 ESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASAC 483
Query: 92 GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV 151
G++G +D ++ + + I + +VD+ +R G Q A + M +K +
Sbjct: 484 GYLGALDLA-KWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKM-VKRDVSA 541
Query: 152 WGALLGGCRVHKN----IDLAEEASRQ 174
W A +G + N I+L +E +Q
Sbjct: 542 WTAAIGAMAMEGNGTGAIELFDEMLQQ 568
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 50/88 (56%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N + N L+DMY+KCG ++ AR++F E ++ + ++ ++ G A+E L +M+
Sbjct: 274 NALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEML 333
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGR 101
+ G +P+ +T + + AC + V G+
Sbjct: 334 KHGPRPDRITMLSAVSACSELDDVSCGK 361
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 171/351 (48%), Positives = 240/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y ++SGF R + V N LIDMY KCG L AR VF M + V +WS+MI A+HG
Sbjct: 376 IHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGN 435
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A A+ F +M E+ I+PNGVTFIG+L+ACGH G V+EG + F SM E+GI P EHYG
Sbjct: 436 ADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYG 495
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL RA FL++A E I MP PN ++WG+L+ C+VH +L E A+++L +L+P
Sbjct: 496 CMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPD 555
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G VVLSNIYA+ +RW DV +RK M G+ K S I ++ VH F+ D H Q
Sbjct: 556 HDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQ 615
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I++ ++++ +KL GY P+TS +L+D+EE++K++ + HSEKLA+ +GL++ +
Sbjct: 616 SDEIYEKLDEVVSKLKLVGYKPSTSGILIDLEEEDKKELVLWHSEKLAVCYGLISRRNES 675
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLR+CEDCH+ KL+S++ EIVVRDR RFH G CSC DYW
Sbjct: 676 CIRIVKNLRICEDCHSFMKLVSKVYQIEIVVRDRTRFHHCSGGICSCRDYW 726
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 92/172 (53%), Gaps = 2/172 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+++ V ++ Y K G ++ AR +F +M ER + WSAMI G A Q +EAL F++M
Sbjct: 286 KHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEM 345
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
++ P+ +T + ++ AC H+G + + + ++ G + ++D+ ++ G
Sbjct: 346 LQKRSVPDQITMLSVISACSHVGALAQA-NWIHTYVDRSGFGRALSVNNALIDMYAKCGN 404
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNG 184
L +A E NMP + N + W +++ +H N D A + R++ +++ NG
Sbjct: 405 LVKAREVFENMP-RKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNG 455
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 80/178 (44%), Gaps = 7/178 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +++ GF + + LI MY C + AR +F +M W+ +I G +G
Sbjct: 143 IHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGH 202
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHY 120
+AL F M +KP+ V +L ACGH G + GR + Y I ++
Sbjct: 203 YDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQ-- 260
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++++ + G + A + + K + +V A+L G + + + ++A DQ+
Sbjct: 261 TALINMYANCGAMDLARKIYDGLSSK-HLIVSTAMLSG---YAKLGMVKDARFIFDQM 314
>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
Length = 562
Score = 366 bits (940), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 166/352 (47%), Positives = 242/352 (68%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++G + V ++LI MY KCGCLE + + ++ E WS+MI HG
Sbjct: 211 QIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHG 270
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +EA+ F +M + G+ N VTF+ LL+AC H G ++G FF M +YG+ P++EHY
Sbjct: 271 RGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHY 330
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL R+G L EA IR+MP++ + V+W LL CR+H+N D+A + ++ +L+P
Sbjct: 331 TCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEEILRLNP 390
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+LSNI+A A+RW+DV++VR MR+ VKK PG S + V V +F GD++HP
Sbjct: 391 QDSATYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVFQFSMGDKSHP 450
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+E+I ++L++ MKL+GY+P+T+ V D + +EKE L HSEKLA+ FGLMN PPG
Sbjct: 451 MSEEIDLYLKELMEEMKLRGYVPDTATVFHDTDSEEKENSLVNHSEKLAIAFGLMNIPPG 510
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+PIR+MKNLR+C DCH A KLIS+I NREI+VRD +RFH F+ G CSCGDYW
Sbjct: 511 SPIRVMKNLRICSDCHVAIKLISDINNREIIVRDTSRFHHFKHGKCSCGDYW 562
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 96/196 (48%), Gaps = 7/196 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y + G+ N+ V ++L MY+K G L +V M R V W+ +I G A +G
Sbjct: 110 QVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNG 169
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ L +N M G++P+ +T + ++ + + + +G++ ++ + G +
Sbjct: 170 HFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQ-IHAEAIKAGANSAVAVL 228
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
++ + S+ G L+++ + + + P+ V+W +++ H EEA +Q++
Sbjct: 229 SSLISMYSKCGCLEDSMKALLDCE-HPDSVLWSSMIAAYGFHGR---GEEAVHLFEQMEQ 284
Query: 181 LNNGYHVV--LSNIYA 194
G + V LS +YA
Sbjct: 285 EGLGGNDVTFLSLLYA 300
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 2/146 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RNI N LI+ +V+ G L+ A +VF EM ER V TW+AM+ GL + L F +M
Sbjct: 21 RNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREM 80
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E+G P+ T +L C + G++ ++ +YG + + + ++G
Sbjct: 81 HELGFLPDEFTLGSVLRGCAGLRASYAGKQ-VHAYVLKYGYEFNLVVGSSLAHMYMKSGS 139
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGG 158
L E + I+ M I+ N V W L+ G
Sbjct: 140 LGEGEKVIKAMRIR-NVVAWNTLIAG 164
>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
Length = 820
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 174/351 (49%), Positives = 234/351 (66%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++G ++ V N L+ MY KCG +E A RV M R V TW+ +I GLA +G+
Sbjct: 470 IHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGR 529
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL F M ++PN TF+ ++ AC V+EGRR F SM +YGI+P +HY
Sbjct: 530 GLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYA 589
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+L+RAG L EA + I MP KP+ +WGALL CR H N+++ E+A+ Q +L+P
Sbjct: 590 CMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQ 649
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V LS IYA A W DVA++RKLM+ GVKK PG S I V G VH FVAGD++HP+
Sbjct: 650 NAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPR 709
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E+I+ E L +K GY+P+T V+ D++++ KE+ + HSEKLA+ +GL++TPP T
Sbjct: 710 TEEIYSELEALTKQIKSLGYVPDTRFVMHDLDQEGKERAVCHHSEKLAIAYGLISTPPET 769
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLRVC DCH A K IS+I REI+ RD +RFH F+ G CSCGDYW
Sbjct: 770 PIRVSKNLRVCTDCHTATKFISKITGREIIARDAHRFHHFKNGECSCGDYW 820
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 88/158 (55%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +S ++RV L MY+KCG ++ AR VF + R V W+ MI GL G
Sbjct: 267 QIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSG 326
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q +EA F++M++ + P+ VT++ +L AC G + G+ ++ + G++ +
Sbjct: 327 QLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKE-IHARAVKDGLVSDVRFG 385
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++++ S+AG +++A + MP K + V W AL+GG
Sbjct: 386 NALINMYSKAGSMKDARQVFDRMP-KRDVVSWTALVGG 422
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 86/163 (52%), Gaps = 14/163 (8%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++G N V N LI MY KCG + ARRVF M R +W+ + A G
Sbjct: 167 VHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGY 226
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+E+L +++ M++ G++P+ +T++ +L ACG + +++G++ + I + EH+
Sbjct: 227 AQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQI-------HAQIVESEHHS 279
Query: 122 ------CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ + + G +++A E +P + + + W ++GG
Sbjct: 280 DVRVSTALTKMYIKCGAVKDAREVFECLPNR-DVIAWNTMIGG 321
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G ++R N LI+MY K G ++ AR+VF M +R V +W+A++ G A GQ
Sbjct: 369 IHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQ 428
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
E+ ++F KM++ G++ N +T++ +L AC + + G+ ++ + GI +
Sbjct: 429 VVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKE-IHAEVVKAGIFADLAVAN 487
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + + G +++A M + + V W L+GG
Sbjct: 488 ALMSMYFKCGSVEDAIRVSEGMSTR-DVVTWNTLIGG 523
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 81/158 (51%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VHE+ + G + N+ + NTL+ +YV CG + ARR+F + ++V +W+ MI G A G
Sbjct: 65 QVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRG 124
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA F M + G++P+ TF+ +L AC ++ GR + E G+
Sbjct: 125 LGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGRE-VHVRVMEAGLANNATVG 183
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + ++ G +++A M + + V W L G
Sbjct: 184 NALISMYAKCGSVRDARRVFDAMASR-DEVSWTTLTGA 220
>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 176/354 (49%), Positives = 238/354 (67%), Gaps = 2/354 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAI 58
R+H+++N G N V L MY KC L AR F I + + W+ MI A
Sbjct: 262 RIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYAS 321
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
HG EA++ F M+ G++P+ VTF+GLL C H G +D G F M T + + P++E
Sbjct: 322 HGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVE 381
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
HY C+VDLL RAG L EA E I MP++ VWGALL CR H+N+++AE A+R+L L
Sbjct: 382 HYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVL 441
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
+P N+G +V+LSN+YAEA WE+V ++R L++ G+KK+PG S I ++G H F+ D++
Sbjct: 442 EPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKS 501
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
HPQA++I++ E L + +K+ GYIP+TS VL DI E+EKE L HSEKLA+ FGL+NT
Sbjct: 502 HPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTR 561
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PG +R+ KNLR+C DCHAA K IS+I REI+VRD NRFHCF+ GSCSCGDYW
Sbjct: 562 PGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 615
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 89/233 (38%), Gaps = 68/233 (29%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM-------------------- 41
VH + G + V +LIDMYVKCG + AR++F +M
Sbjct: 129 VHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGE 188
Query: 42 -----------EERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG--IKPNGVTFIGLL 88
E R + +W+AMI G +G A++AL F++M++ G +KPN VT + +L
Sbjct: 189 IGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVL 248
Query: 89 HACGHMGWVDEGRRFF-------------------------YSMTTEYGIIPQIEHYG-- 121
AC ++ GRR YS+ I G
Sbjct: 249 PACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKN 308
Query: 122 -----CMVDLLSRAGFLQEAYEFIRNM---PIKPNGVVWGALLGGCRVHKNID 166
M+ + G EA NM ++P+ V + LL GC ID
Sbjct: 309 LIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLID 361
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 172/352 (48%), Positives = 235/352 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH ++G V N L+ MY KCG ++ A VF +EE+ V +W+ MI G A HG
Sbjct: 415 QVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHG 474
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
KEAL F M + GI P+ VT +G+L AC H G VD+G +FYSMT +YGI +HY
Sbjct: 475 FGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHY 534
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DLL RAG L +A ++NMP +P+ WGALLG R+H N +L E+A++ + +++P
Sbjct: 535 TCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEP 594
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G +V+LSN+YA + RW DV R+R MR+ GVKK PG+S + V +H F GD HP
Sbjct: 595 DNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHP 654
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ ++I+ E+L MK +GY+ +T +VL D+EE+EK L HSEKLA+ FG++ P G
Sbjct: 655 ERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAG 714
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR++KNLRVCEDCH A K IS+IV R I++RD +RFH F G CSCGDYW
Sbjct: 715 RPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGDYW 766
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NT+I Y + G L A+R+F E R VFTW+AM+ G +G EA F+ M E
Sbjct: 239 NTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPE---- 294
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
N V++ ++ +D+ R F +M + + + M+ ++ G + +A
Sbjct: 295 KNSVSWNAIIAGYVQCKRMDQARELFEAMPCQ-----NVSSWNTMITGYAQNGDIAQARN 349
Query: 139 FIRNMPIKPNGVVWGALLGG 158
F MP + + + W A++ G
Sbjct: 350 FFDRMP-QRDSISWAAIIAG 368
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 115/279 (41%), Gaps = 43/279 (15%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ N +I V+ L AR +F +M ER V +W+AM+ G A +G KEA F++M
Sbjct: 109 RDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM 168
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYS---------------------MTTEY 111
N +++ G+L A G +++ RR F S +
Sbjct: 169 ----PCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDAR 224
Query: 112 GIIPQIEH-----YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNID 166
GI ++ + M+ ++ G L EA P++ + W A++ G + +D
Sbjct: 225 GIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVR-DVFTWTAMVSGYVQNGMLD 283
Query: 167 LAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITV- 225
EA R D + N+ + Y + +R + + R+L + + W+++
Sbjct: 284 ---EARRVFDGMPEKNSVSWNAIIAGYVQCKRMD---QARELFEAMPCQNVSSWNTMITG 337
Query: 226 ---DGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGY 261
+G + + + PQ + I W ++ G GY
Sbjct: 338 YAQNGDIAQARNFFDRMPQRDSI--SWAAIIAGYAQSGY 374
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 109/272 (40%), Gaps = 41/272 (15%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+N+ NT+I Y + G + AR F M +R +W+A+I G A G +EAL F +M
Sbjct: 326 QNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEM 385
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRR---------------------FFY----SM 107
G + N TF L C + ++ G++ Y ++
Sbjct: 386 KRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNI 445
Query: 108 TTEYGIIPQIEH-----YGCMVDLLSRAGFLQEA---YEFIRNMPIKPNGVVWGALLGGC 159
Y + IE + M+ +R GF +EA +E ++ I P+ V +L C
Sbjct: 446 DDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSAC 505
Query: 160 RVHKNIDLAEE--ASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKT 217
+D E S D N+ ++ + ++ A R +D + LM+N+ +
Sbjct: 506 SHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDD---AQNLMKNMPFEPD 562
Query: 218 PG-WSSITVDGVVHEFVAGDETHPQAEKIFQM 248
W ++ +H E A+ IF+M
Sbjct: 563 AATWGALLGASRIHGNTELGE--KAAKMIFEM 592
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 10/140 (7%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N I +++ G + A R+F M R+ +W+AMI G + + A F KM +
Sbjct: 53 NIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDL- 111
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
V++ ++ C + R F M + + M+ ++ G+++EA E
Sbjct: 112 ---VSWNVMISGCVRYRNLRAARLLFDQMPER-----DVVSWNAMLSGYAQNGYVKEAKE 163
Query: 139 FIRNMPIKPNGVVWGALLGG 158
MP K N + W +L
Sbjct: 164 IFDEMPCK-NSISWNGMLAA 182
>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 736
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 172/351 (49%), Positives = 231/351 (65%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + GF N V L+DMY KCG L +RRVF EM ++++ +WSAM+ G +HG+
Sbjct: 386 IHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGR 445
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA++ + M + P+ F +L AC H G V EG+ FY M EY + P + HY
Sbjct: 446 GREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYS 505
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L EAY IR M IKP +W ALL R+HKNI LAE +++++ ++P
Sbjct: 506 CMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPK 565
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++ LSNIYA +RW+DV RVR ++R G+KK+PG S I +D +VH F+ GD++H Q
Sbjct: 566 VVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSHQQ 625
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E I+ +L +K GY P+TS+V D+EE+ KEK L+ HSE+LA+ F L+NT PGT
Sbjct: 626 TEDIYAKLNELKQQLKEAGYKPDTSLVFYDVEEEVKEKMLWDHSERLAIAFALINTGPGT 685
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI KNLRVC DCH KLISE+ REI++RD +RFH F G CSCGDYW
Sbjct: 686 VIRITKNLRVCGDCHTVTKLISELTGREIIMRDIHRFHHFIKGFCSCGDYW 736
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N+LI+MY C C+ ARR+F + + +W++MI G A +G A E+L F +M G
Sbjct: 302 NSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSG 361
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ VTFI +L AC + + G +S + G +VD+ S+ G L +
Sbjct: 362 PDQVTFIAVLGACDQIAALRYGMS-IHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRR 420
Query: 139 FIRNMPIKPNGVVWGALLGGCRVH 162
MP K + V W A++ G +H
Sbjct: 421 VFDEMPDK-SLVSWSAMVAGYGLH 443
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 119/302 (39%), Gaps = 51/302 (16%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH G +I V N+L+ MY K G + AR VF M ER + +W+ MI G A +
Sbjct: 182 RVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNA 241
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQ--- 116
+ A F+ M + G+ + T +GLL AC + V EG+ Y++ G +
Sbjct: 242 DSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFT 301
Query: 117 ---IEHY---GCMVDL---------------------LSRAGFLQEAYEFIRNMPIK--- 146
IE Y CMVD +R G E+ R M +
Sbjct: 302 NSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSG 361
Query: 147 PNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD-PLNNGYHVVLSNIYAEAERWEDVARV 205
P+ V + A+LG C + L + N L ++Y++ +A
Sbjct: 362 PDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKC---GSLACS 418
Query: 206 RKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNT 265
R++ + K WS++ VAG H + + +LDGMK IP+
Sbjct: 419 RRVFDEMPDKSLVSWSAM---------VAGYGLHGRGREAIS----ILDGMKANSVIPDN 465
Query: 266 SV 267
V
Sbjct: 466 GV 467
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N + L Y CG + A +F + + F W+ MI+G A +G ++L + +M+
Sbjct: 94 NTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREML 153
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRR 102
G + + T+ +L ACG + V+ GRR
Sbjct: 154 CFGQRADNFTYPFVLKACGDLLLVEIGRR 182
>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 685
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 171/342 (50%), Positives = 232/342 (67%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
F N+ + N LIDMY KCG + VF EM+E+ + +A I GLA +G K + F
Sbjct: 344 FLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFG 403
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
+ ++GI P+G TF+GLL C H G + +G RFF +++ Y + +EHYGCMVDL RA
Sbjct: 404 QTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRA 463
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190
G L +AY I +MP++PN +VWGALL GCR+ K+ LAE ++L L+P N G +V LS
Sbjct: 464 GMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLS 523
Query: 191 NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWE 250
NIY+ + RW++ A VR +M G+KK PG+S I ++G VHEF+A D++HP ++KI+ E
Sbjct: 524 NIYSVSGRWDEAAEVRDMMNRKGMKKIPGYSWIELEGTVHEFLADDKSHPLSDKIYAKLE 583
Query: 251 KLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLR 310
L + M+L G++P T V D+E++EKE+ L HSEKLA+ FGL++T G IR++KNLR
Sbjct: 584 DLGNEMRLMGFVPTTEFVFFDVEDEEKERVLGHHSEKLAVAFGLISTDHGQVIRVVKNLR 643
Query: 311 VCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
VC DCH KLIS+I REIVVRD NRFHCF GSCSC DYW
Sbjct: 644 VCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 89/167 (53%), Gaps = 2/167 (1%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
++N V TL+++Y KCG +E AR VF M E+ + TWS MIQG A + KE + F +
Sbjct: 244 QKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQ 303
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M++ +KP+ + +G L +C +G +D G + S+ + + + ++D+ ++ G
Sbjct: 304 MLQENLKPDQFSIVGFLSSCASLGALDLG-EWGISLIDRHEFLTNLFMANALIDMYAKCG 362
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ +E + M K + V+ A + G + ++ L+ Q ++L
Sbjct: 363 AMARGFEVFKEMKEK-DIVIMNAAISGLAKNGHVKLSFAVFGQTEKL 408
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + GF ++ +L+ +Y G L A +VF E+ ER+V TW+A+ G G+
Sbjct: 133 LHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGK 192
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA+ F KM+E+G++P+ + +L AC H+G +D G M E +
Sbjct: 193 HREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHM-EEMEMQKNSFVRT 251
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V+L ++ G +++A +M K + V W ++ G
Sbjct: 252 TLVNLYAKCGKMEKARSVFDSMGEK-DIVTWSTMIQG 287
>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
Length = 637
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 170/351 (48%), Positives = 242/351 (68%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + +SG R + V NT++DMY K G + AR+VF ++++ V TW++M+ A +G
Sbjct: 288 VHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGL 347
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA+T F +M + G+ N +TF+ +L AC H G V EG+++F M EY + P+I+HY
Sbjct: 348 GREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYF-DMMKEYNLEPEIDHYV 406
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+VDLL RAG L +A FI MP+KP VWGALLG CR+HKN + + A+ + +LDP
Sbjct: 407 TVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPD 466
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G V+L NIYA +W+ ARVRK+M+ GVKK P S + ++ VH FVA D+THP+
Sbjct: 467 DTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPR 526
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+E+I++ WE++ ++ GY+PNT VLL ++E+E++ L HSEK+AL F L+N P G
Sbjct: 527 SEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGA 586
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRIMKN+R+C DCH+AF+ IS++ REIVVRD NRFH F +GSCSCGDYW
Sbjct: 587 TIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDYW 637
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + S F ++ + N+LI +Y KCG + ARRVF M R + +W+++I G A +
Sbjct: 86 IHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDM 145
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL M+ KPNG TF LL A G G + +++T +Y +
Sbjct: 146 PDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ-IHALTVKYDWHDDVYVGS 204
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ +R G + A + K NGV W AL+ G
Sbjct: 205 ALLDMYARCGRMDMAIAVFDQLESK-NGVSWNALIAG 240
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + + ++ V + L+DMY +CG ++ A VF ++E + +W+A+I G A G
Sbjct: 186 QIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKG 245
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ L F +M G + T+ + A +G +++G ++ ++ + G
Sbjct: 246 DGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQG-KWVHAHMIKSGERLSAFVG 304
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
++D+ +++G + +A + + K + V W ++L
Sbjct: 305 NTILDMYAKSGSMIDARKVFDRVD-KKDVVTWNSML 339
>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
Length = 574
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 181/351 (51%), Positives = 243/351 (69%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + + + LIDMY KCG LE A VF +MEE+ V W+AMI G AIHG+
Sbjct: 224 IHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGR 283
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL F KM G++PN +TF G+L AC H G V E + F SM +G P IEHYG
Sbjct: 284 GREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYG 343
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L+EA E I NMP+KPN +WGALL C +H N++L ++ + L Q+DP
Sbjct: 344 CMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPG 403
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G ++ L++I+A A W ARVR+ M+ GV K PG S I+V+G HEF+AGDE+HPQ
Sbjct: 404 HGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQ 463
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I M E++++ ++ +GY P +LLD+E+KEKE ++ HSEKLA+TFGL++T PG
Sbjct: 464 IKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGM 523
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVCEDCH KLIS++ REI++RDR RFH F+ G+C+CGDYW
Sbjct: 524 TIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 574
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 25/165 (15%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + GF I N+L+++Y K G ++ AR +F ++++R
Sbjct: 139 QIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDT-------------- 184
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEH 119
EAL F++M GIK + V + L AC +G +D+G+ Y E I P +
Sbjct: 185 ---EALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPIL-- 239
Query: 120 YGC-MVDLLSRAGFLQEAYEFIRNMPIKPNGV-VWGALLGGCRVH 162
GC ++D+ ++ G L+EA E R M K GV VW A++ G +H
Sbjct: 240 -GCVLIDMYAKCGDLEEAIEVFRKMEEK--GVSVWTAMISGYAIH 281
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 28/223 (12%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88
G L AR VF + F W+ MI+G + + +EAL ++ M+ + N TF LL
Sbjct: 66 GSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLL 125
Query: 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA------------ 136
AC M ++E ++ ++ + G +I ++++ S++G ++ A
Sbjct: 126 KACSSMSALEETQQ-IHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDT 184
Query: 137 -----YEFIRNMPIKPNGVVWGALLGGCRVHKNID----LAEEASRQLDQLDPLNNGYHV 187
+ ++ IK + V + L C +D + + ++DP+
Sbjct: 185 EALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILG---C 241
Query: 188 VLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVH 230
VL ++YA+ E+ V + M GV W+++ +H
Sbjct: 242 VLIDMYAKCGDLEEAIEVFRKMEEKGVSV---WTAMISGYAIH 281
>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
Length = 746
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 174/349 (49%), Positives = 245/349 (70%), Gaps = 1/349 (0%)
Query: 4 EYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAK 63
EY + S FR ++ V +LID Y KCG ++ AR VF + ++ V WSAM+ G +HGQ +
Sbjct: 399 EYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGR 458
Query: 64 EALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCM 123
E++ F+ M + G+ PN VTF+GLL AC + G V+EG F+ M +YGI P+ +HY C+
Sbjct: 459 ESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMR-DYGIEPRHQHYACV 517
Query: 124 VDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183
VDLL RAG L AY F+ NMPI+P VWGALL C++H+++ L E A+ +L LDP N
Sbjct: 518 VDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNT 577
Query: 184 GYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAE 243
G++V LSN+YA + W+ VA+VR LMR G+ K G+S I ++G + F AGD+THP+++
Sbjct: 578 GHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSK 637
Query: 244 KIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPI 303
+IF+ E L +K G++P+T VL D+ +E E+ L HSE+LA+ +GL++TPPGT +
Sbjct: 638 EIFEEVEDLERRLKEAGFVPHTESVLHDLNYEETEETLCNHSERLAIAYGLISTPPGTTL 697
Query: 304 RIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
RI KNLR C++CHAA KLIS++V+REIVVRD RFH F+ G+CSCGDYW
Sbjct: 698 RITKNLRACDNCHAAIKLISKLVSREIVVRDACRFHHFKDGACSCGDYW 746
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH + GF ++ V N L+ +Y KCG + A VF + +RT+ +W+++I G A +G
Sbjct: 194 RVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNG 253
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q EAL F++M + ++P+ + + +L A + ++ G+ + + G+ + +
Sbjct: 254 QPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKS-IHGCVIKMGLECEFDLL 312
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ L ++ G + A F N P+ + W A++ G
Sbjct: 313 ISLTSLYAKCGHVMVARLFF-NQVENPSLIFWNAMISG 349
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 18/151 (11%)
Query: 20 TLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP 79
+L +Y KCG + AR F ++E ++ W+AMI G +G A+EA+ F M I+P
Sbjct: 314 SLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRP 373
Query: 80 NGVTFIGLLHACGHMG------WVDEGRRFFYSMTTEY--GIIPQIEHYGCMVDLLSRAG 131
+ +T + AC +G W+DE Y +E+ +I ++D ++ G
Sbjct: 374 DSITVTSSIAACAQIGSLELARWMDE-----YISMSEFRNDVIVNTS----LIDTYAKCG 424
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ A +P K + VVW A++ G +H
Sbjct: 425 SVDMARFVFDRIPDK-DVVVWSAMMVGYGLH 454
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
L++ G + AR++F + + VF W+A+++ + HG A+ + +M + P+
Sbjct: 113 LVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPD 172
Query: 81 GVTFIGLLHACGHMGWVDEGRR 102
G +F +L AC + ++ GRR
Sbjct: 173 GFSFPCVLKACSALPALEMGRR 194
>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
Length = 784
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 172/352 (48%), Positives = 230/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + F + N L+ Y KCG +E A F + ER V +WSAMI GLA HG
Sbjct: 433 QVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHG 492
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
K AL F +M++ GI PN +T +L AC H G VDE +R+F SM +GI EHY
Sbjct: 493 HGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHY 552
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DLL RAG L +A E + +MP + N VWGALLG RVHK+ +L + A+ +L L+P
Sbjct: 553 SCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEP 612
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+G HV+L+N YA + W +VA+VRKLM++ +KK P S + V VH F+ GD++HP
Sbjct: 613 EKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHP 672
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++I+ ++L D M GYIPN V L D++ EKE L HSE+LA+ F L++TPPG
Sbjct: 673 MTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPG 732
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLR+C DCH AFK IS IV+REI++RD NRFH F+ G+CSCGDYW
Sbjct: 733 APIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 784
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 7/172 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM-EERTVFTWSAMIQGLAIH 59
+VH + +GF ++ V N L+ MY G ++ ARRVF E ER +W+ ++ +
Sbjct: 28 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKN 87
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
Q +A+ F +M+ GI+P F +++AC +D GR+ ++M G +
Sbjct: 88 DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQ-VHAMVVRMGYEKDVFT 146
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRV----HKNIDL 167
+VD+ + G + A MP + V W AL+ GC + H+ I+L
Sbjct: 147 ANALVDMYVKMGRVDIASVIFEKMP-DSDVVSWNALISGCVLNGHDHRAIEL 197
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 2/159 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + G+ +++ N L+DMYVK G ++ A +F +M + V +W+A+I G ++G
Sbjct: 130 QVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNG 189
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A+ +M G+ PN +L AC G D GR+ M
Sbjct: 190 HDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGV 249
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
G +VD+ ++ FL +A + M + + ++W AL+ GC
Sbjct: 250 G-LVDMYAKNHFLDDAMKVFDWMSHR-DLILWNALISGC 286
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 4/163 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + GF + V N LID Y KC CL A RVF E + ++MI L+
Sbjct: 332 QVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCD 391
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ A+ F +M+ G++P+ LL+AC + ++G++ ++ + +
Sbjct: 392 HGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQ-VHAHLIKRQFMSDAFAG 450
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV-WGALLGGCRVH 162
+V ++ G +++A ++P + GVV W A++GG H
Sbjct: 451 NALVYTYAKCGSIEDAELAFSSLPER--GVVSWSAMIGGLAQH 491
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
L+DMY K L+ A +VF M R + W+A+I G + G+ EA + F + + G+ N
Sbjct: 251 LVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVN 310
Query: 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
T +L + + R+ +++ + G I ++D + L +A
Sbjct: 311 RTTLAAVLKSTASLEAASATRQ-VHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDA 365
>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 823
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 169/353 (47%), Positives = 244/353 (69%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE-RTVFTWSAMIQGLAIH 59
++H S ++GF + + N+L+ MY +CG L+ A R F EME+ V +W+++I LA H
Sbjct: 471 QLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIISALAKH 530
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G A+ AL+ F+ MI G+KPN VT+I +L AC H+G V EG+ +F SM ++ +IP++EH
Sbjct: 531 GHAERALSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQKDHRLIPRMEH 590
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CMVDLL+R+G +QEA EFI MP K + +VW LLG CR ++NI++ E A+R + L+
Sbjct: 591 YACMVDLLARSGLVQEALEFINEMPCKADALVWKTLLGACRTYENIEIGEIAARHVIDLE 650
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P + +V+LSN+YA W++VAR+R LMR+ + K G S + V +HEF AGD +H
Sbjct: 651 PQDPAPYVLLSNLYAHGGLWDEVARIRSLMRHRNLSKETGLSWMHVGNTIHEFRAGDTSH 710
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+A++I+ L+ +K GY+P+TS+VL D+ +K KE+ L +HSEK+A+ FGL+ T P
Sbjct: 711 PRAQEIYAKLAVLIREIKDIGYVPDTSIVLHDMSDKLKEQCLLQHSEKIAVAFGLITTLP 770
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH+A K IS+ REI++RD NRFH + G CSCG+YW
Sbjct: 771 TKPIRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRMKDGKCSCGEYW 823
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 75/152 (49%), Gaps = 12/152 (7%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEE-RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEI 75
V N+L+ MY KCG + ARRVF M R + +W+AM L +G +EAL +M+E
Sbjct: 81 VANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQEALVLLGEMLES 140
Query: 76 GIKPNGVTFIGLLHAC--GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC-MVDLLSRAGF 132
G++PN T HAC G + G +++ T G GC ++D+ +R G
Sbjct: 141 GLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKT--GFWGTDVSVGCALIDMFARNGD 198
Query: 133 LQEAYEFIRNMPIKPNGVVWGALL-----GGC 159
L A + + ++ VVW ++ GGC
Sbjct: 199 LVAARKVFNGL-VERTVVVWTLMITRYVQGGC 229
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 6/158 (3%)
Query: 5 YSNQSGF-RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAK 63
++ ++GF ++ V LIDM+ + G L AR+VF + ERTV W+ MI G A
Sbjct: 172 FAIKTGFWGTDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAG 231
Query: 64 EALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCM 123
+A+ F M+E G +P+G T ++ AC G G++ +S+ G++ +
Sbjct: 232 KAVELFLGMLEDGFEPDGYTMSSMVSACAEQGSAGLGQQ-LHSLVLRLGLVSDTCVSCGL 290
Query: 124 VDLLSRAGFLQE---AYEFIRNMPIKPNGVVWGALLGG 158
VD+ ++ Q A + + MP N + W AL+ G
Sbjct: 291 VDMYTKLQMEQSMECARKVFKRMPTH-NVMSWTALISG 327
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 7/141 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCG---CLEGARRVFIEMEERTVFTWSAMIQG-L 56
++H + G + V L+DMY K +E AR+VF M V +W+A+I G +
Sbjct: 270 QLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMPTHNVMSWTALISGYV 329
Query: 57 AIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYS-MTTEYGIIP 115
GQ A+ +M+ I+PN +T+ LL AC ++ D GR+ M T G +
Sbjct: 330 QCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNVN 389
Query: 116 QIEHYGCMVDLLSRAGFLQEA 136
+ + +V + + +G ++EA
Sbjct: 390 VVGN--ALVSMYAESGCMEEA 408
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 8/153 (5%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE-I 75
V N L+ MY + GC+E AR+ F ++ ER + + S+ I G+ + S++ IE +
Sbjct: 391 VGNALVSMYAESGCMEEARKAFDQLYERNLLSTSSDI------GETGRSNASWSSQIESM 444
Query: 76 GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE 135
+ + TF LL A +G +G++ ++++ + G +V + SR G+L +
Sbjct: 445 DVGVSTFTFASLLSAAATVGLPTKGQQ-LHALSIKTGFESDKGISNSLVSMYSRCGYLDD 503
Query: 136 AYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
A M N + W +++ H + + A
Sbjct: 504 ACRAFDEMEDDHNVISWTSIISALAKHGHAERA 536
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 168/351 (47%), Positives = 243/351 (69%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ ++ + + + L+DMY KCG ++ A +VF + +R TWSA+I A+HG+
Sbjct: 292 IHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGR 351
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A++A+ F+ M + G+ PN V +IG+L AC H G V+EGR FF M G+ P+IEHYG
Sbjct: 352 AEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYG 411
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L+EA E IRNMPI+P+ V+W ALLG C++HKN+ + E + L +L P
Sbjct: 412 CMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPH 471
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +V LSN+YA WE VARVR M+ + ++K PG S I + G++HEF+ D++H +
Sbjct: 472 DSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSK 531
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A++I M ++ ++ GY PNT V L+ +E+E+ + L HSEK+A+ FGL++T P
Sbjct: 532 AKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQH 591
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P++I+KNLR+CEDCHA+ KLIS I R+I+VRDR RFH F+ GSCSC DYW
Sbjct: 592 PLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 80/150 (53%), Gaps = 4/150 (2%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N+ + N +ID V+ G ++ A+ +F EM +R+V +W+ MI G A +G EA+ F +M
Sbjct: 203 NVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQ 262
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRF-FYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
I PN VT + +L A +G ++ G+ Y+ + I + +VD+ S+ G
Sbjct: 263 SSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLG--SALVDMYSKCGS 320
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ EA + +P K N + W A++G +H
Sbjct: 321 IDEALQVFETLP-KRNAITWSAIIGAFAMH 349
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 84/198 (42%), Gaps = 33/198 (16%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAI----HGQAKEALTSFNKMIEIG-IKPNGVTFI 85
++ AR VF +M E F W+ +++ LA H Q+ EAL F+ M+ G +KPN TF
Sbjct: 68 IDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQS-EALMLFSAMLCDGRVKPNRFTFP 126
Query: 86 GLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE-FIRNMP 144
+L AC + EG++ + + ++G +V + +++AY F +N+
Sbjct: 127 SVLKACARASRLREGKQ-IHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVV 185
Query: 145 IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAE-RWEDVA 203
G C++ +LD +VVL NI + + R D+
Sbjct: 186 ---------DFDGSCQM---------------ELDKRKQDGNVVLWNIMIDGQVRLGDIK 221
Query: 204 RVRKLMRNLGVKKTPGWS 221
+ L + + W+
Sbjct: 222 SAKNLFDEMPQRSVVSWN 239
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 168/351 (47%), Positives = 243/351 (69%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ ++ + + + L+DMY KCG ++ A +VF + +R TWSA+I A+HG+
Sbjct: 292 IHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGR 351
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A++A+ F+ M + G+ PN V +IG+L AC H G V+EGR FF M G+ P+IEHYG
Sbjct: 352 AEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYG 411
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L+EA E IRNMPI+P+ V+W ALLG C++HKN+ + E + L +L P
Sbjct: 412 CMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPH 471
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +V LSN+YA WE VARVR M+ + ++K PG S I + G++HEF+ D++H +
Sbjct: 472 DSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSK 531
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A++I M ++ ++ GY PNT V L+ +E+E+ + L HSEK+A+ FGL++T P
Sbjct: 532 AKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQH 591
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P++I+KNLR+CEDCHA+ KLIS I R+I+VRDR RFH F+ GSCSC DYW
Sbjct: 592 PLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 79/150 (52%), Gaps = 4/150 (2%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N+ + N +ID V+ G ++ A+ +F EM R+V +W+ MI G A +G EA+ F +M
Sbjct: 203 NVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQ 262
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRF-FYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
I PN VT + +L A +G ++ G+ Y+ + I + +VD+ S+ G
Sbjct: 263 SSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLG--SALVDMYSKCGS 320
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ +A + +P K N + W A++G +H
Sbjct: 321 IDKALQVFETLP-KRNAITWSAIIGAFAMH 349
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 84/198 (42%), Gaps = 33/198 (16%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAI----HGQAKEALTSFNKMIEIG-IKPNGVTFI 85
++ AR VF +M E F W+ +++ LA H Q+ EAL F+ M+ G +KPN TF
Sbjct: 68 IDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQS-EALMLFSAMLCDGRVKPNRFTFP 126
Query: 86 GLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE-FIRNMP 144
+L AC + EG++ + + ++G +V + +++AY F +N+
Sbjct: 127 SVLKACARASRLREGKQ-IHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVV 185
Query: 145 IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAE-RWEDVA 203
G C++ +LD +VVL NI + + R D+
Sbjct: 186 ---------DFDGSCQM---------------ELDKRKQDGNVVLWNIMIDGQVRLGDIK 221
Query: 204 RVRKLMRNLGVKKTPGWS 221
+ L + + W+
Sbjct: 222 SAKNLFDEMPPRSVVSWN 239
>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 722
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 168/357 (47%), Positives = 243/357 (68%), Gaps = 6/357 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + +G + + N LI+MY KCG L+ R VF +M R V +WS+MI L++HG+
Sbjct: 366 VHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGE 425
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A +AL+ F +M + ++PN VTF+G+L+ C H G V+EG++ F SMT EY I P++EHYG
Sbjct: 426 ASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYG 485
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL RA L+EA E I +MP+ N V+WG+L+ CR+H ++L + A++++ +L+P
Sbjct: 486 CMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPD 545
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G V++SNIYA +RWEDV +R++M V K G S I +G HEF+ GD+ H Q
Sbjct: 546 HDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQ 605
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ +I+ ++++ +KL GY+P+ VL+D+EE+EK+ + HSEKLAL FGLMN
Sbjct: 606 SNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEE 665
Query: 302 P------IRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVCEDCH FKL+S++ REI+VRDR RFHC++ G CSC DYW
Sbjct: 666 EKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 77/150 (51%), Gaps = 2/150 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ V ++ Y KCG L+ A+ +F + E++ + W+ MI +EAL F +M
Sbjct: 276 RNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEM 335
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
GIKP+ V+ ++ AC ++G +D+ ++ +S G+ ++ ++++ ++ G
Sbjct: 336 CCSGIKPDVVSMFSVISACANLGILDKA-KWVHSCIHVNGLESELSINNALINMYAKCGG 394
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
L + MP + N V W +++ +H
Sbjct: 395 LDATRDVFEKMP-RRNVVSWSSMINALSMH 423
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 5/195 (2%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
+DMY CG + AR VF EM R V TW+ MI+ G EA F +M + + P+
Sbjct: 152 FMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPD 211
Query: 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFI 140
+ ++ ACG G + R Y E + +V + + AG + A EF
Sbjct: 212 EMILCNIVSACGRTGNMRYNRA-IYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFF 270
Query: 141 RNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWE 200
R M ++ N V A++ G + ++A DQ + + + + Y E++ +
Sbjct: 271 RKMSVR-NLFVSTAMVSG---YSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQ 326
Query: 201 DVARVRKLMRNLGVK 215
+ RV + M G+K
Sbjct: 327 EALRVFEEMCCSGIK 341
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 173/352 (49%), Positives = 229/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH + + ++RV LI MY KCG A+ VF + E+ V TW+AMI A HG
Sbjct: 755 RVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHG 814
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A +AL FN M + GIKP+G TF +L AC H G V EG + F SM +EYG++P IEHY
Sbjct: 815 LASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHY 874
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GC+V LL RA QEA I MP P+ VW LLG CR+H NI LAE A+ +L+
Sbjct: 875 GCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNA 934
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N +++LSN+YA A RW+DVA++R++M G++K PG S I VD ++HEF+A D +HP
Sbjct: 935 RNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHP 994
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ ++L M+ GY P+T VL D+ + +E L HSE+LA+ +GL+ TPPG
Sbjct: 995 ETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPG 1054
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPIRI KNLR+C DCH A K IS++V REI+ RD NRFH F+ G CSC DYW
Sbjct: 1055 TPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 1106
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SG + ++ + N LI+MY++CG L+ AR VF ++ R V +W+AMI G A G
Sbjct: 553 QIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQG 612
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEH 119
+ +A+ F +M G +P TF +L C +DEG++ Y + + Y + + +
Sbjct: 613 EDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGN 672
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
++ S++G + +A E MP + + V W ++ G + A E + Q+ + D
Sbjct: 673 --ALISAYSKSGSMTDAREVFDKMPSR-DIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQD 729
Query: 180 PLNNGYHVV 188
+ N + V
Sbjct: 730 VVPNKFSFV 738
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 95/191 (49%), Gaps = 4/191 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + ++ G ++++ N LI MY +CG L AR +F M +R + +W+A+I G A
Sbjct: 352 IHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARRED 411
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ + +M G+KP VTF+ LL AC + +G + + GI
Sbjct: 412 RGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADG-KMIHEDILRSGIKSNGHLAN 470
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL--DQLD 179
++++ R G L EA + + + W +++ G H + + A + +++ ++L+
Sbjct: 471 ALMNMYRRCGSLMEAQNVFEGTQAR-DVISWNSMIAGHAQHGSYETAYKLFQEMQNEELE 529
Query: 180 PLNNGYHVVLS 190
P N + VLS
Sbjct: 530 PDNITFASVLS 540
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 83/158 (52%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H+ + + G +IRV L+ M V+CG ++ A++ F +R V ++A+I LA HG
Sbjct: 250 RIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHG 309
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA + +M G+ N T++ +L+AC ++ G + +S +E G ++
Sbjct: 310 HNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIG 368
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + +R G L +A E MP K + + W A++ G
Sbjct: 369 NALISMYARCGDLPKARELFYTMP-KRDLISWNAIIAG 405
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 100/201 (49%), Gaps = 3/201 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++G++R+ RV N+L+ MY KCG L AR+VF + R V +++ M+ A
Sbjct: 149 KIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKA 208
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
KE L F +M GI P+ VT+I LL A +DEG+R + +T E G+ I
Sbjct: 209 YVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKR-IHKLTVEEGLNSDIRVG 267
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH-KNIDLAEEASRQLDQLD 179
+V + R G + A + + + + VV+ AL+ H N++ E+ R
Sbjct: 268 TALVTMCVRCGDVDSAKQAFKGTADR-DVVVYNALIAALAQHGHNVEAFEQYYRMRSDGV 326
Query: 180 PLNNGYHVVLSNIYAEAERWE 200
LN ++ + N + ++ E
Sbjct: 327 ALNRTTYLSILNACSTSKALE 347
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 85/158 (53%), Gaps = 2/158 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+HE +SG + N + N L++MY +CG L A+ VF + R V +W++MI G A HG
Sbjct: 453 IHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGS 512
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ A F +M ++P+ +TF +L C + ++ G++ + TE G+ +
Sbjct: 513 YETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQ-IHGRITESGLQLDVNLGN 571
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
++++ R G LQ+A ++ + + + W A++GGC
Sbjct: 572 ALINMYIRCGSLQDARNVFHSLQHR-DVMSWTAMIGGC 608
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 6/159 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H ++ +I + N LI+MYVKC + A +VF EM R V +W+++I A G
Sbjct: 48 RIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQG 107
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE-YGIIPQIEH 119
K+A F +M G PN +T+I +L AC ++ G++ + Y P++++
Sbjct: 108 FKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQN 167
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV-WGALLG 157
++ + + G L A + I P VV + +LG
Sbjct: 168 --SLLSMYGKCGDLPRARQVFAG--ISPRDVVSYNTMLG 202
>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
Length = 539
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 167/353 (47%), Positives = 243/353 (68%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRN-IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
++H Y ++ F + V N LIDMY K G ++ AR VF ++++ +W++++ G +H
Sbjct: 187 QIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMH 246
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G+ KEAL F++M +G++P+GVT + +L+AC H G +D+G FF SM+ E+G+IP EH
Sbjct: 247 GRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEH 306
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CMVDLL RAG L EA E I M ++P+ +VW ALL GCR+H N++L E A++QL +L+
Sbjct: 307 YACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELN 366
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
N+G + +LSNIYA A RW+DVARVR LM+N G++K PG S + F D+TH
Sbjct: 367 SENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKTH 426
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
PQ+++I+++ L +K+ GY+P TS L D++++EK L+ HSEKLAL +G++ + P
Sbjct: 427 PQSKQIYEILRSLTQRIKVLGYVPETSFALHDVDDEEKVDLLFEHSEKLALAYGILISAP 486
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIRI KNLRVC DCH A IS I++ EI++RD +RFH F+ GSCSC YW
Sbjct: 487 GAPIRITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFKKGSCSCSGYW 539
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 60/106 (56%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + +SG ++ V N L+DMY KCG ++ A +VF ++E+ V +W+AM+ G + G+
Sbjct: 35 VHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVFDRIKEKDVVSWNAMVNGYSQIGR 94
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM 107
++AL F KM E I+ N V++ ++ A G E F M
Sbjct: 95 FEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGCETLDVFREM 140
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 173/353 (49%), Positives = 245/353 (69%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQ--SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
+H Y N+ G + +LIDMY KCG +E A++VF M R++ +W+AMI G A+H
Sbjct: 320 IHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMH 379
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G+A A F+KM + GI P+ +TF+GLL AC H G +D GR F SM+ +Y I P++EH
Sbjct: 380 GKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEH 439
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YGCM+DLL G +EA E IR MP++P+GV+W +LL C++H N++L E ++ L +++
Sbjct: 440 YGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIE 499
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N G +V+LSNIYA A RW+ VA++R L+ + G+KK PG SSI +D VVHEF+ GD+ H
Sbjct: 500 PENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHEFIIGDKFH 559
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ +I++M E++ M+ G++P+TS VL ++EE+ KE L HSEKLA+ FGL++T P
Sbjct: 560 PRNREIYRMLEEMEMLMEETGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKP 619
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GT + I+KNLRVC +CH A KLIS+I REI+ RDR R H + G SC DYW
Sbjct: 620 GTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRLHLLKDGVWSCHDYW 672
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 92/183 (50%), Gaps = 4/183 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + GF NI++ N LID+Y KCG +E A +F + ++ V +W+ +I G
Sbjct: 218 QLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMN 277
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY-GIIPQIEH 119
KEAL F +M+ G PN VT + +L AC H+G +D GR + G+
Sbjct: 278 LYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSL 337
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL--DQ 177
++D+ ++ G ++ A + +M + W A++ G +H + A + ++ +
Sbjct: 338 LTSLIDMYAKCGDIEAAKQVFDSMLTRSLS-SWNAMIFGFAMHGKANAAFDLFSKMRKNG 396
Query: 178 LDP 180
+DP
Sbjct: 397 IDP 399
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 83/159 (52%), Gaps = 5/159 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ LI Y G + AR++F E+ + V +W+AMI G KEAL + M
Sbjct: 129 RHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDM 188
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
++ +KP+ T + ++ AC G ++ GR+ +S ++G I+ ++DL S+ G
Sbjct: 189 MKTNVKPDESTMVTVVSACAQSGSIELGRQ-LHSWIEDHGFGSNIKIVNVLIDLYSKCGE 247
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
++ A + + K + + W L+GG H +++L +EA
Sbjct: 248 VETACGLFQGLA-KKDVISWNTLIGG---HTHMNLYKEA 282
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90
L A +F ++E + W+ M +G A++ + AL + MI +G+ PN +F LL +
Sbjct: 15 LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKS 74
Query: 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
C + EG++ + + G + ++ + ++ G L++A++
Sbjct: 75 CAKSKALIEGQQ-IHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHK 121
>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Brachypodium distachyon]
Length = 818
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 242/352 (68%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S ++GFR + + N+L+ MY +CG LE A R F EM++ V +W+++I GLA HG
Sbjct: 467 KLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEMKDHNVISWTSIISGLAKHG 526
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
AK+AL+ F+ MI G+KPN VT+I +L AC H+G V EG+ F SM ++G++P++EHY
Sbjct: 527 YAKQALSMFHDMILAGVKPNDVTYIAVLSACSHVGLVKEGKEHFRSMQKDHGLLPRMEHY 586
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL+R+G ++EA +FI MP K + +VW LL CR + N ++ E A+ + L+P
Sbjct: 587 ACIVDLLARSGLVEEARQFINEMPCKADALVWKTLLSACRTYGNTEIGEIAANHVINLEP 646
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +V+LSN+YA+A W++VAR+R LMR+ + K G S + V +HEF AGD +HP
Sbjct: 647 RDPAPYVLLSNLYADAGLWDEVARIRSLMRDKNLSKETGLSWMDVGNTIHEFRAGDTSHP 706
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
A I+ L+ +K GY+P+TS+VL D+ E+ KE++L +HSEK+A+ FGL+ T
Sbjct: 707 LAIDIYAKLVTLIREIKDIGYVPDTSIVLHDMSEELKEQYLLQHSEKIAVAFGLITTSAT 766
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P+RI KNLRVC DCH+A K IS+ REI++RD NRFH + G CSCG+YW
Sbjct: 767 KPMRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRMKDGICSCGEYW 818
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 75/148 (50%), Gaps = 5/148 (3%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ V LIDM+ + G L A+RVF + ERT W+ +I G A + + F M+
Sbjct: 179 DVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHML 238
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF- 132
+ G +P+G + ++ AC +G V G++ +S+ G++ +VD+ ++
Sbjct: 239 DDGFEPDGYSMSSMISACTELGSVRLGQQ-LHSVALRLGLVSDSCVSCGLVDMYAKLKME 297
Query: 133 --LQEAYEFIRNMPIKPNGVVWGALLGG 158
++ A + + MP + N + W AL+ G
Sbjct: 298 RSMEHARKVFKTMP-RHNVMSWTALISG 324
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 7/141 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCG---CLEGARRVFIEMEERTVFTWSAMIQGLA 57
++H + + G + V L+DMY K +E AR+VF M V +W+A+I G
Sbjct: 267 QLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYV 326
Query: 58 IHG-QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ 116
G Q + F +M+ I+PN +T+ LL AC ++ D GR+ + I
Sbjct: 327 QSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTS--IAH 384
Query: 117 IEHYG-CMVDLLSRAGFLQEA 136
+ G +V + + +G ++EA
Sbjct: 385 VNVVGNALVSMYAESGCMEEA 405
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 3/142 (2%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEM-EERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEI 75
V N+L+ MY KCG +E ARRVF +M R + +W+AM LA +G +E+L +M+E+
Sbjct: 78 VANSLLTMYSKCGAVEAARRVFDQMCGVRDLVSWTAMASCLARNGAERESLRLLGEMLEL 137
Query: 76 GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC-MVDLLSRAGFLQ 134
G++PN T AC + G GC ++D+ +R G L
Sbjct: 138 GLRPNAFTLCAAARACFPQELFRLAGGVVLGFVLKTGFWGTDVSVGCALIDMFARNGDLV 197
Query: 135 EAYEFIRNMPIKPNGVVWGALL 156
A + I+ VVW L+
Sbjct: 198 AAQRVFDGL-IERTSVVWTLLI 218
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 66/146 (45%), Gaps = 8/146 (5%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V N L+ MY + GC+E AR+ F ++ E + + S ++ + + + +
Sbjct: 388 VGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETERNNASCSSKIEGMDDGV--- 444
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
+ TF LL A +G + +G++ ++++ + G +V + +R G+L++A
Sbjct: 445 ---STFTFASLLSAAASVGLLTKGQK-LHALSMKAGFRSDQGISNSLVSMYARCGYLEDA 500
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVH 162
M N + W +++ G H
Sbjct: 501 CRAFDEMK-DHNVISWTSIISGLAKH 525
>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 624
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 172/354 (48%), Positives = 248/354 (70%), Gaps = 3/354 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME--ERTVFTWSAMIQGLAIH 59
+H Y ++S + N R+ +L+DMY KCG ++ A +VF + + V+ W+AMI G A+H
Sbjct: 271 IHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMH 330
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G++KEA+ F +M + PN VTF+ LL+AC H V+EGR +F SM + YGI P+IEH
Sbjct: 331 GKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEH 390
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YGCMVDLL R+G L+EA E + NMP+ P+ +WGALLG CR+HK+I+ + + + +LD
Sbjct: 391 YGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELD 450
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
+ G HV+L+N+Y+ + +W++ VR+ + G KKTPG SSI ++GV H+F+ GD +H
Sbjct: 451 SDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSH 510
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDI-EEKEKEKFLYRHSEKLALTFGLMNTP 298
PQ ++++ +++ +K GY+P VLLDI +E++KE L +HSEKLA+ FGL+NTP
Sbjct: 511 PQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINTP 570
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PGT IRI+KNLRVC DCH A K IS++ REI+VRDR R+H F+ G CSC DYW
Sbjct: 571 PGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 624
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 35/176 (19%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N +I YV G + A+ +F EM ER V +W+ +I G G KEAL F++M++ G
Sbjct: 187 NIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPP 246
Query: 79 PNGVTFIGLLHACGHMGWVDEGR---------------RFFYSMT--------------- 108
PN T L AC ++ +D+GR R S+
Sbjct: 247 PNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKV 306
Query: 109 --TEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIK---PNGVVWGALLGGC 159
EYG+ ++ + M+ + G +EA + M ++ PN V + ALL C
Sbjct: 307 FHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNAC 362
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 80/183 (43%), Gaps = 6/183 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKC--GCLEGARRVFIEMEERTVFTWSAMIQGLA- 57
+ H + +G + N L+ + + G L A ++F ++ + VF ++ MI+ A
Sbjct: 33 QTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMIKAHAV 92
Query: 58 IHGQAKEALTSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ 116
I + ++ F M+ + G PN TF+ + ACG+ V EG + + G+
Sbjct: 93 IPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVH-AIKIGLESN 151
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLD 176
+ M+ + + G + EA + + + + W ++GG I A+E ++
Sbjct: 152 LFVTNAMIRMYANWGLVDEARR-VFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMS 210
Query: 177 QLD 179
+ D
Sbjct: 211 ERD 213
>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 877
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 172/352 (48%), Positives = 230/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + F + N L+ Y KCG +E A F + ER V +WSAMI GLA HG
Sbjct: 526 QVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHG 585
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
K AL F +M++ GI PN +T +L AC H G VDE +R+F SM +GI EHY
Sbjct: 586 HGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHY 645
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DLL RAG L +A E + +MP + N VWGALLG RVHK+ +L + A+ +L L+P
Sbjct: 646 SCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEP 705
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+G HV+L+N YA + W +VA+VRKLM++ +KK P S + V VH F+ GD++HP
Sbjct: 706 EKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHP 765
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++I+ ++L D M GYIPN V L D++ EKE L HSE+LA+ F L++TPPG
Sbjct: 766 MTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPG 825
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLR+C DCH AFK IS IV+REI++RD NRFH F+ G+CSCGDYW
Sbjct: 826 APIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 877
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 7/172 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM-EERTVFTWSAMIQGLAIH 59
+VH + +GF ++ V N L+ MY G ++ ARRVF E ER +W+ ++ +
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKN 180
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
Q +A+ F +M+ GI+P F +++AC +D GR+ ++M G +
Sbjct: 181 DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQ-VHAMVVRMGYEKDVFT 239
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRV----HKNIDL 167
+VD+ + G + A MP + V W AL+ GC + H+ I+L
Sbjct: 240 ANALVDMYVKMGRVDIASVIFEKMP-DSDVVSWNALISGCVLNGHDHRAIEL 290
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 2/159 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + G+ +++ N L+DMYVK G ++ A +F +M + V +W+A+I G ++G
Sbjct: 223 QVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNG 282
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A+ +M G+ PN +L AC G D GR+ M
Sbjct: 283 HDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGV 342
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
G +VD+ ++ FL +A + M + + ++W AL+ GC
Sbjct: 343 G-LVDMYAKNHFLDDAMKVFDWMSHR-DLILWNALISGC 379
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 106/231 (45%), Gaps = 10/231 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + GF + V N LID Y KC CL A RVF E + ++MI L+
Sbjct: 425 QVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCD 484
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ A+ F +M+ G++P+ LL+AC + ++G++ ++ + +
Sbjct: 485 HGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQ-VHAHLIKRQFMSDAFAG 543
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV-WGALLGGCRVHKNIDLAEEASRQLDQLD 179
+V ++ G +++A ++P + GVV W A++GG H + A E ++ +D
Sbjct: 544 NALVYTYAKCGSIEDAELAFSSLPER--GVVSWSAMIGGLAQHGHGKRALELFGRM--VD 599
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL----GVKKTPGWSSITVD 226
N H+ ++++ V ++ ++ G+ +T S +D
Sbjct: 600 EGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMID 650
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
L+DMY K L+ A +VF M R + W+A+I G + G+ EA + F + + G+ N
Sbjct: 344 LVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVN 403
Query: 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
T +L + + R+ +++ + G I ++D + L +A
Sbjct: 404 RTTLAAVLKSTASLEAASATRQ-VHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDA 458
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 8/159 (5%)
Query: 2 VHEYSN--QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
H ++N +SGF ++R N LI Y KC ARRVF E+ + +WS+++ + +
Sbjct: 24 AHLHANLLKSGFLASLR--NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNN 81
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G + A+ +F+ M G+ N +L + ++M G +
Sbjct: 82 GLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAQLGAQ----VHAMAMATGFGSDVFV 137
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V + GF+ +A + N V W L+
Sbjct: 138 ANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSA 176
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 181/351 (51%), Positives = 243/351 (69%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + + + LIDMY KCG LE A VF +MEE+ V W+AMI G AIHG+
Sbjct: 272 IHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGR 331
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL F KM G++PN +TF G+L AC H G V E + F SM +G P IEHYG
Sbjct: 332 GREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYG 391
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L+EA E I NMP+KPN +WGALL C +H N++L ++ + L Q+DP
Sbjct: 392 CMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPG 451
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G ++ L++I+A A W ARVR+ M+ GV K PG S I+V+G HEF+AGDE+HPQ
Sbjct: 452 HGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQ 511
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I M E++++ ++ +GY P +LLD+E+KEKE ++ HSEKLA+TFGL++T PG
Sbjct: 512 IKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGM 571
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVCEDCH KLIS++ REI++RDR RFH F+ G+C+CGDYW
Sbjct: 572 TIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 86/154 (55%), Gaps = 8/154 (5%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+R+ N++ID Y KCG +E A +F M ER + +W++MI G G+ KEAL F++
Sbjct: 181 QRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHR 240
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGC-MVDLLSR 129
M GIK + V + L AC +G +D+G+ Y E I P + GC ++D+ ++
Sbjct: 241 MQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPIL---GCVLIDMYAK 297
Query: 130 AGFLQEAYEFIRNMPIKPNGV-VWGALLGGCRVH 162
G L+EA E R M K GV VW A++ G +H
Sbjct: 298 CGDLEEAIEVFRKMEEK--GVSVWTAMISGYAIH 329
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 31/161 (19%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88
G L AR VF + F W+ MI+G + + +EAL ++ M+ + N TF LL
Sbjct: 66 GSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLL 125
Query: 89 HACGHMGWVDEGRRF---------------------FYSMTTEYG----IIPQIEH---- 119
AC M +E ++ YS + + + Q++
Sbjct: 126 KACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTV 185
Query: 120 -YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
+ M+D ++ G ++ AYE +MP + N + W +++ GC
Sbjct: 186 SWNSMIDGYTKCGEIEMAYEIFNHMPER-NIISWTSMISGC 225
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 172/352 (48%), Positives = 235/352 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH ++G V N L+ MY KCG ++ A VF +EE+ V +W+ MI G A HG
Sbjct: 334 QVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHG 393
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
KEAL F M + GI P+ VT +G+L AC H G VD+G +FYSMT +YGI +HY
Sbjct: 394 FGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHY 453
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DLL RAG L +A ++NMP +P+ WGALLG R+H N +L E+A++ + +++P
Sbjct: 454 TCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEP 513
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G +V+LSN+YA + RW DV R+R MR+ GVKK PG+S + V +H F GD HP
Sbjct: 514 DNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHP 573
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ ++I+ E+L MK +GY+ +T +VL D+EE+EK L HSEKLA+ FG++ P G
Sbjct: 574 ERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAG 633
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR++KNLRVCEDCH A K IS+IV R I++RD +RFH F G CSCGDYW
Sbjct: 634 RPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGDYW 685
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NT+I Y + G L A+R+F E R VFTW+AM+ G +G EA F+ M E
Sbjct: 158 NTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPE---- 213
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
N V++ ++ +D+ R F +M + + + M+ ++ G + +A
Sbjct: 214 KNSVSWNAIIAGYVQCKRMDQARELFEAMPCQ-----NVSSWNTMITGYAQNGDIAQARN 268
Query: 139 FIRNMPIKPNGVVWGALLGG 158
F MP + + + W A++ G
Sbjct: 269 FFDRMPQR-DSISWAAIIAG 287
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 109/272 (40%), Gaps = 41/272 (15%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+N+ NT+I Y + G + AR F M +R +W+A+I G A G +EAL F +M
Sbjct: 245 QNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEM 304
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRR---------------------FFY----SM 107
G + N TF L C + ++ G++ Y ++
Sbjct: 305 KRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNI 364
Query: 108 TTEYGIIPQIEH-----YGCMVDLLSRAGFLQEA---YEFIRNMPIKPNGVVWGALLGGC 159
Y + IE + M+ +R GF +EA +E ++ I P+ V +L C
Sbjct: 365 DDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSAC 424
Query: 160 RVHKNIDLAEE--ASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKT 217
+D E S D N+ ++ + ++ A R +D + LM+N+ +
Sbjct: 425 SHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDD---AQNLMKNMPFEPD 481
Query: 218 PG-WSSITVDGVVHEFVAGDETHPQAEKIFQM 248
W ++ +H E A+ IF+M
Sbjct: 482 AATWGALLGASRIHGNTELGEK--AAKMIFEM 511
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 114/280 (40%), Gaps = 50/280 (17%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
R ++R C V+ L AR +F +M ER V +W+AM+ G A +G KEA F++
Sbjct: 34 RHDLRGC-------VRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDE 86
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYS---------------------MTTE 110
M N +++ G+L A G +++ RR F S +
Sbjct: 87 M----PCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDA 142
Query: 111 YGIIPQIEH-----YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNI 165
GI ++ + M+ ++ G L EA P++ + W A++ G + +
Sbjct: 143 RGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVR-DVFTWTAMVSGYVQNGML 201
Query: 166 DLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITV 225
D EA R D + N+ + Y + +R + + R+L + + W+++
Sbjct: 202 D---EARRVFDGMPEKNSVSWNAIIAGYVQCKRMD---QARELFEAMPCQNVSSWNTMIT 255
Query: 226 ----DGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGY 261
+G + + + PQ + I W ++ G GY
Sbjct: 256 GYAQNGDIAQARNFFDRMPQRDSI--SWAAIIAGYAQSGY 293
>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
Length = 745
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 168/352 (47%), Positives = 240/352 (68%), Gaps = 5/352 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R H+Y + + F V N LI+MY KCG ++ AR VF M +++ +W++M+ G +HG
Sbjct: 399 RHHQYDSSAYF-----VANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHG 453
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EAL F+KM + G P+ +TF+ +L+AC H G VD+G +F SM+ +YG+ P+ EHY
Sbjct: 454 RGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHY 513
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+DLL+R G L +A++ +++MP++P VVW ALL CRVH N++LAE A +L +++
Sbjct: 514 AYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNA 573
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G + ++SNIYA A RW+DVAR+R LM+ G+KK PG S + F GD +HP
Sbjct: 574 ENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHP 633
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ + E L+D +K GY+P T+ L D++E+EK L HSEKLAL +GL+ T PG
Sbjct: 634 LSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPG 693
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH+AF IS+IV+ EIVVRD +RFH F+ GSCSCG YW
Sbjct: 694 CPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 745
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 14/178 (7%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIHGQAKEALT 67
G ++ V N LIDMY KC + AR +F I +EER V TW+ MI G A +G + +AL
Sbjct: 296 GEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALK 355
Query: 68 SFNKMIE--IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY--GCM 123
F +MI G+ PN T +L AC H+ + G++ ++ + ++ C+
Sbjct: 356 LFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQ-IHAYVLRHHQYDSSAYFVANCL 414
Query: 124 VDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+++ S+ G + A +M K + + W +++ G +H S LD D +
Sbjct: 415 INMYSKCGDVDTARHVFDSMSQK-SAISWTSMMTGYGMHG------RGSEALDIFDKM 465
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 87/202 (43%), Gaps = 45/202 (22%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + ++G ++ V N LID Y KCG +E A +VF ME + V +W+AM+ G + G
Sbjct: 142 VHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGN 201
Query: 62 AK-----------------------------------EALTSFNKMIEIGIKPNGVTFIG 86
K EAL F +MI G PN VT I
Sbjct: 202 FKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIIS 261
Query: 87 LLHACGHMGWVDEG--------RRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGFLQEAY 137
+L AC +G +G + ++ ++G + + Y ++D+ S+ + A
Sbjct: 262 VLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAAR 321
Query: 138 EFIRNMPIKP-NGVVWGALLGG 158
++P++ N V W ++GG
Sbjct: 322 SIFDDIPLEERNVVTWTVMIGG 343
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 11/176 (6%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEA 65
+GF N+ +CN L+ MY +CG LE A +F E+ +R V +W++++ A A
Sbjct: 39 NGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTA 98
Query: 66 LTSFNKM-IEIGIKPNG-----VTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
L F+KM + + KP ++ + +L ACG + V + + + G +
Sbjct: 99 LDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKE-VHGNAIRNGTFLDVFV 157
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
++D ++ G ++ A + M K + V W A++ G N A E + +
Sbjct: 158 GNALIDAYAKCGLMENAVKVFNMMEFK-DVVSWNAMVAGYSQSGNFKAAFELFKNM 212
>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Brachypodium distachyon]
Length = 646
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 171/352 (48%), Positives = 234/352 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y + GF N+ + ++LIDMY KCG + ARR+F ++ + +W+AMI G A+HG
Sbjct: 295 QLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHG 354
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A+EAL F++M +KPN +TF+ +L AC H G VD+G ++F SM+ YGI+P +EH+
Sbjct: 355 PAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHH 414
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+ D L R G L+EAY FI M IKP VW LL C+VHKN LAEE ++++ L+P
Sbjct: 415 AALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEP 474
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ G H++LSN Y+ + RW + A +RK MR G++K P S I V H FVA D++HP
Sbjct: 475 RSMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHP 534
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
E+I + M +GY+PNT V DIEE++K L HSEKLA+ FG+++TPPG
Sbjct: 535 WYERIIDALNVFSEQMVRQGYVPNTDDVFQDIEEEQKNSVLCGHSEKLAIVFGIISTPPG 594
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IR+MKNLRVC DCH K IS+IV REIV+RD NRFH F+ G CSCGD+W
Sbjct: 595 TTIRVMKNLRVCVDCHTVTKFISKIVGREIVMRDANRFHHFKDGICSCGDFW 646
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 2/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ ++GF ++ V ++LIDMY C + + +VF + R W++M+ G A +G
Sbjct: 195 LHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGS 254
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL F +M+ GIKP VTF L+ ACG++ + G++ ++ G +
Sbjct: 255 VDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQ-LHAYVIRGGFDGNVFISS 313
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ + G + A + P+ V W A++ G +H
Sbjct: 314 SLIDMYCKCGNVSIARRIFDRIQ-SPDIVSWTAMIMGHALH 353
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 16/181 (8%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGC--------------LEGARRVFIEMEERTVF 47
+H + +SG + N L+++Y K LE R+VF EM E+ V
Sbjct: 80 LHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVV 139
Query: 48 TWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM 107
+W+ ++ G A G+ EAL +M G KP+ T +L V G +
Sbjct: 140 SWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGME-LHGF 198
Query: 108 TTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDL 167
T G + ++D+ + + + N+P++ + ++W ++L GC + ++D
Sbjct: 199 ATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR-DAILWNSMLAGCAQNGSVDE 257
Query: 168 A 168
A
Sbjct: 258 A 258
>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
Length = 852
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 168/352 (47%), Positives = 240/352 (68%), Gaps = 5/352 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R H+Y + + F V N LI+MY KCG ++ AR VF M +++ +W++M+ G +HG
Sbjct: 506 RHHQYDSSAYF-----VANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHG 560
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EAL F+KM + G P+ +TF+ +L+AC H G VD+G +F SM+ +YG+ P+ EHY
Sbjct: 561 RGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHY 620
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+DLL+R G L +A++ +++MP++P VVW ALL CRVH N++LAE A +L +++
Sbjct: 621 AYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNA 680
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G + ++SNIYA A RW+DVAR+R LM+ G+KK PG S + F GD +HP
Sbjct: 681 ENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHP 740
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ + E L+D +K GY+P T+ L D++E+EK L HSEKLAL +GL+ T PG
Sbjct: 741 LSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPG 800
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH+AF IS+IV+ EIVVRD +RFH F+ GSCSCG YW
Sbjct: 801 CPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 852
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 14/178 (7%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIHGQAKEALT 67
G ++ V N LIDMY KC + AR +F I +EER V TW+ MI G A +G + +AL
Sbjct: 403 GEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALK 462
Query: 68 SFNKMIE--IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY--GCM 123
F +MI G+ PN T +L AC H+ + G++ ++ + ++ C+
Sbjct: 463 LFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQ-IHAYVLRHHQYDSSAYFVANCL 521
Query: 124 VDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+++ S+ G + A +M K + + W +++ G +H S LD D +
Sbjct: 522 INMYSKCGDVDTARHVFDSMSQK-SAISWTSMMTGYGMHG------RGSEALDIFDKM 572
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 87/202 (43%), Gaps = 45/202 (22%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + ++G ++ V N LID Y KCG +E A +VF ME + V +W+AM+ G + G
Sbjct: 249 VHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGN 308
Query: 62 AK-----------------------------------EALTSFNKMIEIGIKPNGVTFIG 86
K EAL F +MI G PN VT I
Sbjct: 309 FKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIIS 368
Query: 87 LLHACGHMGWVDEG--------RRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGFLQEAY 137
+L AC +G +G + ++ ++G + + Y ++D+ S+ + A
Sbjct: 369 VLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAAR 428
Query: 138 EFIRNMPIKP-NGVVWGALLGG 158
++P++ N V W ++GG
Sbjct: 429 SIFDDIPLEERNVVTWTVMIGG 450
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 11/176 (6%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEA 65
+GF N+ +CN L+ MY +CG LE A +F E+ +R V +W++++ A A
Sbjct: 146 NGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTA 205
Query: 66 LTSFNKM-IEIGIKPNG-----VTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
L F+KM + + KP ++ + +L ACG + V + + + G +
Sbjct: 206 LDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKE-VHGNAIRNGTFLDVFV 264
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
++D ++ G ++ A + M K + V W A++ G N A E + +
Sbjct: 265 GNALIDAYAKCGLMENAVKVFNMMEFK-DVVSWNAMVAGYSQSGNFKAAFELFKNM 319
>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g57430, chloroplastic-like [Cucumis sativus]
Length = 863
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 168/352 (47%), Positives = 235/352 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G ++ N+L++MY KCG ++ A +F E+ R + +WSAMI GLA HG
Sbjct: 512 QIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHG 571
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++AL F +M++ GI PN +T + +L AC H G V E RRFF M +GI P EHY
Sbjct: 572 HGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHY 631
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVD+L R G L EA ++ MP + + VWGALLG R+HKNI+L A+ L L+P
Sbjct: 632 ACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEP 691
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+G H++L+NIYA W++VA+VR+ M+N VKK PG S I + V+ F+ GD +HP
Sbjct: 692 EKSGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHP 751
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++++I+ + L + + GY+P L D+E+ EKE+ L+ HSEKLA+ FGL+ TPPG
Sbjct: 752 RSKEIYVKLDDLRERLTSAGYVPMIETDLHDVEQIEKEQLLWHHSEKLAVAFGLIATPPG 811
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLRVC DCH AFK IS++ +REI+VRD NRFH F+ GSCSCGDYW
Sbjct: 812 APIRVKKNLRVCIDCHTAFKFISKVASREIIVRDINRFHHFRDGSCSCGDYW 863
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y + G+ + N L+DMY K GC E A VF E+ + + +W+A+I G +H
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHE 268
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ AL KM + P+ T L AC +G V GR+ +S + + P
Sbjct: 269 KNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQ-LHSALMKMDMEPDSFVG 327
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ S+ G LQ+A MP K + +VW +++ G
Sbjct: 328 VGLIDMYSKCGLLQDARMVFDLMPXK-DVIVWNSIISG 364
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 111/231 (48%), Gaps = 10/231 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH S +SG++ + V N+L+D Y KC LE A +VF + +++MI + +G
Sbjct: 411 QVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYG 470
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL + +M + IKP+ F L +AC ++ ++G++ + + G++ +
Sbjct: 471 LGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQ-IHVHVLKCGLLSDVFAG 529
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV-WGALLGGCRVHKNIDLAEEASRQLDQLD 179
+V++ ++ G + +A I G+V W A++GG H + A + Q+ +
Sbjct: 530 NSLVNMYAKCGSIDDASCIFNE--ISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNG 587
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRK---LMRNL-GVKKTPGWSSITVD 226
L N H+ L ++ + V R+ LM L G+ T + VD
Sbjct: 588 ILPN--HITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVD 636
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 40/186 (21%)
Query: 22 IDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNG 81
+++Y KC C AR++ I+ E + +WSA+I G +G+ +EAL ++ +M +G K N
Sbjct: 89 VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148
Query: 82 VTFIGLLHACGHMGWVDEGRRFF-YSMTTEY---GIIP---------------QIEHYG- 121
TF +L C ++ G++ ++ TE GI P + E+YG
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208
Query: 122 -------------------CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ +++G + A +P KP+ V W A++ GC +H
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIP-KPDIVSWNAVIAGCVLH 267
Query: 163 KNIDLA 168
+ DLA
Sbjct: 268 EKNDLA 273
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 114/282 (40%), Gaps = 46/282 (16%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
LIDMY KCG L+ AR VF M + V W+++I G + G EA++ F M + G++ N
Sbjct: 330 LIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFN 389
Query: 81 GVTFIGLLHACG-----------HMGWVDEGRRF----FYSMTTEYGIIPQIEH------ 119
T +L + H + G ++ S+ YG +E
Sbjct: 390 QTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFE 449
Query: 120 ---------YGCMVDLLSRAGFLQEA---YEFIRNMPIKPNGVVWGALLGGCRVHKNIDL 167
Y M+ S+ G +EA Y +++ IKP+ ++ +L C +
Sbjct: 450 VCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQ 509
Query: 168 AEEASRQLDQLDPLNNGYH-VVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD 226
++ + + L++ + L N+YA+ +D + + + + WS++
Sbjct: 510 GKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCI---FNEISWRGIVSWSAM--- 563
Query: 227 GVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVV 268
+ G H K Q++ ++L L +I SV+
Sbjct: 564 ------IGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVL 599
>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
Length = 687
Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 171/351 (48%), Positives = 239/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G ++ V N L +MY KCG +E ARR+F M R+ +W+ M+Q A HG+
Sbjct: 337 IHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGE 396
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++E L KM + G+K NG+TF+ +L +C H G + EG ++F+S+ + GI + EHYG
Sbjct: 397 SEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYG 456
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL RAG LQEA ++I MP +P V W +LLG CRVHK++D + A+R+L +LDP
Sbjct: 457 CLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGACRVHKDLDRGKLAARKLLELDPG 516
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+ VVLSNIY+E W++ A++R+ M + VKK PG SSI V VHEF D +HP+
Sbjct: 517 NSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPR 576
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A +I+ E+L M+ GY+P+T +VL D++E++KE L HSEKLA+ FGL++TP +
Sbjct: 577 AAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPEKS 636
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ I KNLRVCEDCH A K IS+I REIVVRD +RFH F+ GSCSC DYW
Sbjct: 637 SLHIFKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 687
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 91/179 (50%), Gaps = 4/179 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKC--GCLEGARRVFIEMEERTVFTWSAMIQGLAI 58
R+H + G + N L+++Y +C G L+ A + EM+E+ + W+ +I G +
Sbjct: 233 RIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTL 292
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
HG+++EAL ++ ++ I + VTFI +L+AC + EG + +S E G+ +
Sbjct: 293 HGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEG-KMIHSNAVECGLDSDVI 351
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
+ ++ S+ G ++ A +MPI+ + V W +L H + + R+++Q
Sbjct: 352 VKNALTNMYSKCGSMENARRIFDSMPIR-SAVSWNGMLQAYAQHGESEEVLKLIRKMEQ 409
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 89/182 (48%), Gaps = 5/182 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V E +++ F ++ V LI MY +C E A +VF M+++ + TWSA+I A HG
Sbjct: 133 VRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFADHGH 192
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL F M + GI PN VTFI LL+ ++E R + + TE+G+
Sbjct: 193 CGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSR-IHLLITEHGLDDTTTMSN 251
Query: 122 CMVDLLSR--AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
+V++ R G L A ++ M + W L+ G +H A E ++L QL+
Sbjct: 252 ALVNVYGRCETGELDVAEVILQEMD-EQQITAWNVLINGYTLHGRSREALETYQRL-QLE 309
Query: 180 PL 181
+
Sbjct: 310 AI 311
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 102/226 (45%), Gaps = 3/226 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +S ++ V L++ Y KCG L AR+VF M R+V TW++MI +I +
Sbjct: 32 IHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISER 91
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ EA F +M G + + VTF+ +L AC + + G+ S+ +E +
Sbjct: 92 SGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENLQHGKHVRESI-SETSFELDLFVGT 150
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
++ + +R + A + M K N + W A++ H + A R + Q L
Sbjct: 151 ALITMYARCRSPENAAQVFGRMKQK-NLITWSAIITAFADHGHCGEALRYFRMMQQEGIL 209
Query: 182 -NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD 226
N + L N + E+++R+ L+ G+ T S+ V+
Sbjct: 210 PNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVN 255
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 181/351 (51%), Positives = 243/351 (69%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + + + LIDMY KCG LE A VF +MEE+ V W+AMI G AIHG+
Sbjct: 272 IHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGR 331
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL F KM G++PN +TF G+L AC H G V E + F SM +G P IEHYG
Sbjct: 332 GREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYG 391
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L+EA E I NMP+KPN +WGALL C +H N++L ++ + L Q+DP
Sbjct: 392 CMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPG 451
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G ++ L++I+A A W ARVR+ M+ GV K PG S I+V+G HEF+AGDE+HPQ
Sbjct: 452 HGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQ 511
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I M E++++ ++ +GY P +LLD+E+KEKE ++ HSEKLA+TFGL++T PG
Sbjct: 512 IKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGM 571
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVCEDCH KLIS++ REI++RDR RFH F+ G+C+CGDYW
Sbjct: 572 TIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 86/154 (55%), Gaps = 8/154 (5%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+R+ N++ID Y KCG +E A +F M ER + +W++MI G G+ KEAL F++
Sbjct: 181 QRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHR 240
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGC-MVDLLSR 129
M GIK + V + L AC +G +D+G+ Y E I P + GC ++D+ ++
Sbjct: 241 MQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPIL---GCVLIDMYAK 297
Query: 130 AGFLQEAYEFIRNMPIKPNGV-VWGALLGGCRVH 162
G L+EA E R M K GV VW A++ G +H
Sbjct: 298 CGDLEEAIEVFRKMEEK--GVSVWTAMISGYAIH 329
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 31/161 (19%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88
G L AR VF + F W+ MI+G + + +EAL ++ M+ + N TF LL
Sbjct: 66 GSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLL 125
Query: 89 HACGHMGWVDEGRRF---------------------FYSMTTEYG----IIPQIEH---- 119
AC M ++E ++ YS + + + Q++
Sbjct: 126 KACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTV 185
Query: 120 -YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
+ M+D ++ G ++ AYE +MP + N + W +++ GC
Sbjct: 186 SWNSMIDGYTKCGEIEMAYEIFNHMPER-NIISWTSMISGC 225
>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 167/351 (47%), Positives = 242/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+ +Y + + R N+ V LIDMY KCG ++ A ++F M + V+TW+ +I G A++G+
Sbjct: 265 IDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGR 324
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ AL +F++MI KP+ VTF+G+L AC H G V+EGR +F SM E+G+ P+IEHYG
Sbjct: 325 GESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYG 384
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAGFL EA + I+ M ++P+ ++W LLG CR+H NI L E A ++L +L+P
Sbjct: 385 CMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGACRIHGNIQLGEFAIKKLLELEPN 444
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N +V+L+N+YA +RW+ V VR++M V+K PG SSI +D VV+EFV + P
Sbjct: 445 NGENYVLLANLYARDQRWDKVGEVREMMDCRRVRKVPGCSSIEIDNVVYEFVVSNYIKPG 504
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E+++++ + +KL GY+ +T + DIEE+EKE L HSEKLAL FGL+ +P G
Sbjct: 505 FEEVYKLLADMNKKLKLAGYVADTGMASYDIEEEEKEHSLMYHSEKLALAFGLLKSPSGL 564
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+RI+KNLR+C+DCH FK++S++ R+I VRDRNRFH F G+CSC DYW
Sbjct: 565 TLRIVKNLRICQDCHGFFKIVSKVYRRDISVRDRNRFHHFVGGACSCKDYW 615
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 20/160 (12%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
Q GF N+ V L++MY C + AR+VF E+ +R + +W+A+I G + ++ +
Sbjct: 170 QMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVID 229
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY------- 120
F +M G KP VT +G+L AC H+G +++GR I I+H
Sbjct: 230 VFREMQIAGAKPVEVTMVGVLLACAHLGALNQGR----------WIDDYIDHNRLRLNVF 279
Query: 121 --GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ ++ G + EA + + M +K N W L+ G
Sbjct: 280 VGTALIDMYAKCGVVDEAEKIFKAMRVK-NVYTWNVLISG 318
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 175/352 (49%), Positives = 240/352 (68%), Gaps = 1/352 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H ++ ++ V LI MY KCG ++ A VF + ++ V++W++MI G A HG
Sbjct: 630 RLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHG 689
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ KEAL F +M + G+KP+ +TF+G L AC H G + EG F SM ++ I P++EHY
Sbjct: 690 RGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMK-DFNIEPRMEHY 748
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDL RAG L EA EFI M +KP+ +WGALLG C+VH +++LAE+ +++ +LDP
Sbjct: 749 GCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDP 808
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++G +V+LSNIYA A W++V ++RK+M + GV K PG S I VDG VH F + D+THP
Sbjct: 809 NDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDKTHP 868
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q E+I +L MK GY+P+T VL D+E+ EKE L HSE+LA+ +GL+ TPP
Sbjct: 869 QIEEIHAELGRLHMEMKKLGYVPDTRYVLHDVEDSEKEHALCHHSERLAIAYGLLKTPPL 928
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPI I KNLRVC DCH A KLIS+I R+I+ RD NRFH F+ G CSCGD+W
Sbjct: 929 TPIVISKNLRVCGDCHTATKLISKITKRQIIARDSNRFHHFKDGVCSCGDFW 980
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 86/168 (51%), Gaps = 2/168 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH + G I V L+ MY KCG +E A VF ++ R V +W+AMI G A HG
Sbjct: 327 RVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHG 386
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +EA FNKMIE GI+PN VTF+ +L AC + +GR+ + + G I
Sbjct: 387 RMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQ-IHDRIIKAGYITDDRVR 445
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++ + ++ G L +A + K N V W A++ H+ D A
Sbjct: 446 TALLSMYAKCGSLMDARNVFERIS-KQNVVAWNAMITAYVQHEKYDNA 492
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 90/170 (52%), Gaps = 2/170 (1%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
++GF ++ + N L+ M+V CG L A +F +M ER + +W+ +I G HG+ + A
Sbjct: 536 RAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFD 595
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F M E G+KP+ +TF GLL+AC + EGRR +++ TE + + ++ +
Sbjct: 596 YFKMMQESGVKPDQITFTGLLNACASPEALTEGRR-LHALITEAALDCDVVVGTGLISMY 654
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
++ G + +A+ N+P K N W +++ G H A E Q+ Q
Sbjct: 655 TKCGSIDDAHLVFHNLP-KKNVYSWTSMITGYAQHGRGKEALELFCQMQQ 703
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 91/160 (56%), Gaps = 2/160 (1%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
+G+ ++ V LI+M++KCG ++ A +VF + R + TW++MI GLA H Q K+A
Sbjct: 234 AGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNL 293
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
F M E G++P+ V F+ LL AC H +++G+R M E G+ +I ++ + +
Sbjct: 294 FQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARM-KEVGLDTEIYVGTALLSMYT 352
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
+ G +++A E + N+ N V W A++ G H ++ A
Sbjct: 353 KCGSMEDALE-VFNLVKGRNVVSWTAMIAGFAQHGRMEEA 391
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 15/221 (6%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H + S + +I + N LI MY KCG A+++F EM ++ V++W+ ++ G H
Sbjct: 125 RIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHR 184
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +EA +M++ G+KP+ TF+ +L+AC VD+G F S+ G +
Sbjct: 185 RYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELF-SLILNAGWDTDLFVG 243
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA-------EEASR 173
++++ + G + +A + N+P + + + W +++ G H+ A EE
Sbjct: 244 TALINMHIKCGGVDDALKVFNNLP-RRDLITWTSMITGLARHRQFKQACNLFQVMEEEGV 302
Query: 174 QLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGV 214
Q D++ V L E E RV M+ +G+
Sbjct: 303 QPDKV------AFVSLLKACNHPEALEQGKRVHARMKEVGL 337
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H+ ++G+ + RV L+ MY KCG L AR VF + ++ V W+AMI H
Sbjct: 428 QIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHE 487
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ A+ +F +++ GIKP+ TF +L+ C ++ G ++ S+ G +
Sbjct: 488 KYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELG-KWVQSLIIRAGFESDLHIR 546
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+V + G L A +MP + + V W ++ G H
Sbjct: 547 NALVSMFVNCGDLMSAMNLFNDMP-ERDLVSWNTIIAGFVQH 587
>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Glycine max]
Length = 748
Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 244/351 (69%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +S + G ++ V + LIDMY KCG ++ ARR F +M + +W+A+++G A+HG+
Sbjct: 398 IHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGK 457
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AKE + F+ M++ G KP+ VTF +L AC G +EG R + SM+ E+GI P++EHY
Sbjct: 458 AKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYA 517
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+V LLSR G L+EAY I+ MP +P+ VWGALL CRVH N+ L E A+ +L L+P
Sbjct: 518 CLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPT 577
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +++LSNIYA W++ R+R++M++ G++K PG+S I V VH +AGD++HPQ
Sbjct: 578 NPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQ 637
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ I + +KL MK GY+P T+ VL D+EE++KE+ L HSEKLA+ GL+NT PG
Sbjct: 638 MKDILEKLDKLNMQMKKSGYLPKTNFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTSPGQ 697
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P++++KNLR+C+DCHA K+IS + REI VRD NRFH F+ G CSCGD+W
Sbjct: 698 PLQVIKNLRICDDCHAVIKVISRLEGREIYVRDTNRFHHFKDGVCSCGDFW 748
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 96/193 (49%), Gaps = 19/193 (9%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ SGF + V ++L MY+KC + AR++F M +R V WSAMI G + G
Sbjct: 125 QLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLG 184
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM---------TTEY 111
+EA F +M G++PN V++ G+L G+ G+ DE F M +T
Sbjct: 185 LVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVS 244
Query: 112 GIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
++P + GC+ D++ A + + ++ + + V A+L ++ +E
Sbjct: 245 CVLPAV---GCLEDVVVGA----QVHGYVIKQGLGSDKFVVSAMLD---MYGKCGCVKEM 294
Query: 172 SRQLDQLDPLNNG 184
SR D+++ + G
Sbjct: 295 SRVFDEVEEMEIG 307
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 37/197 (18%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER---------------- 44
+VH Y + G + V + ++DMY KCGC++ RVF E+EE
Sbjct: 261 QVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNG 320
Query: 45 -------------------TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFI 85
V TW+++I + +G+ EAL F M G++PN VT
Sbjct: 321 MVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIP 380
Query: 86 GLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPI 145
L+ ACG++ + G+ + + GI + ++D+ ++ G +Q A M
Sbjct: 381 SLIPACGNISALMHGKE-IHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMS- 438
Query: 146 KPNGVVWGALLGGCRVH 162
N V W A++ G +H
Sbjct: 439 ALNLVSWNAVMKGYAMH 455
>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Vitis vinifera]
Length = 632
Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 171/361 (47%), Positives = 247/361 (68%), Gaps = 11/361 (3%)
Query: 2 VHEYSNQSGFRR-NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
VH Y+ ++ + NI V ++DMY KCG + A + F +M +R V +W+AM+ GLA+HG
Sbjct: 273 VHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMHG 332
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ AL F +M + KP+ VTF +L AC H G VD+G +F ++ + YGI P++EHY
Sbjct: 333 LGRAALDIFPQMFKEA-KPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVYGITPKVEHY 391
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG L+EA +R MPI+PN VV G+LLG C +H + L E ++L QLDP
Sbjct: 392 ACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSIHGKLQLGEHLLQELVQLDP 451
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N YH++LSN+YA A + +R++++ G+KK PG SSI V G VH+F AGD++HP
Sbjct: 452 QNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSSIHVGGQVHQFSAGDKSHP 511
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLD---------IEEKEKEKFLYRHSEKLALT 291
+ +++ M ++++ ++L GY PNT++ +E++EKE+ L+ HSEKLA+
Sbjct: 512 RTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLEDDLVEQEEKEQALFSHSEKLAIC 571
Query: 292 FGLMNTPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDY 351
FGL++T PG P+ I KNLR+C+DCH+A K++S+I NREIV+RDRNRFHCF+ GSCSC DY
Sbjct: 572 FGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKIYNREIVIRDRNRFHCFKEGSCSCCDY 631
Query: 352 W 352
W
Sbjct: 632 W 632
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 80/180 (44%), Gaps = 35/180 (19%)
Query: 16 RVCNTLIDMYVKCGCLEGARRVFIEME-------------------------------ER 44
+ CN ++DMY K G + ARRVF EM+ ER
Sbjct: 154 KACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPER 213
Query: 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRF 103
W+ MI G G +E+ +MI ++ ++ N VT +L AC G + GR
Sbjct: 214 NEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWV 273
Query: 104 F-YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
Y++ T+ + I MVD+ ++ G + A++F + MP + N V W A+L G +H
Sbjct: 274 HAYALKTKEKEL-NIMVGTAMVDMYAKCGRIHIAFKFFKKMP-QRNVVSWNAMLSGLAMH 331
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 6/143 (4%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEM--EERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
N L+ Y CGC AR+VF E+ + W+ ++ H + EAL F +M G
Sbjct: 54 NALLQFYASCGCAWQARKVFDEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCG 113
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
+KP+ VT + L C +G V G + M + G+ + ++D+ +++G + EA
Sbjct: 114 VKPDEVTLVCLFGGCARLGDVVVGAQGHGCM-VKMGLGGVEKACNAVMDMYAKSGLMGEA 172
Query: 137 YEFIRNMPIKPNGVV-WGALLGG 158
M K VV W +L G
Sbjct: 173 RRVFYEM--KGQSVVSWTVILDG 193
>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 804
Score = 365 bits (936), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 171/351 (48%), Positives = 235/351 (66%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++G ++ V N L+ MY KCG +E A RVF M R V TW+ +I GL +G+
Sbjct: 454 IHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGR 513
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL + M G++PN TF+ +L AC V+EGRR F M+ +YGI+P +HY
Sbjct: 514 GLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYA 573
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+L+RAG L+EA + I +P+KP+ +WGALL CR+H N+++ E A+ +L+P
Sbjct: 574 CMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQ 633
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V LS IYA A W DVA++RK M+ GVKK PG S I + G VH FVA D++HP+
Sbjct: 634 NAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSHPR 693
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I+ E L MK GY+P+T V+ D++++ KE+ + HSEKLA+ +GL++TPPGT
Sbjct: 694 TQEIYAELETLKKQMKSLGYVPDTRFVMHDLDDEGKERAVCHHSEKLAIAYGLISTPPGT 753
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH A K IS+I REI+ RD +RFH F+ G CSCGDYW
Sbjct: 754 PIRISKNLRVCTDCHTATKFISKITKREIIARDAHRFHHFKNGECSCGDYW 804
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + +S + ++RV L MY+KCG + AR VF + R V W+ MI+G G
Sbjct: 251 QIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSG 310
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q +EA +F++M+E G+ P+ T+ +L AC G + G+ ++ + G++ +
Sbjct: 311 QLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKE-IHARAAKDGLVSDVRFG 369
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
++++ S+AG +++A + MP K + V W LLG
Sbjct: 370 NALINMYSKAGSMKDARQVFDRMP-KRDVVSWTTLLG 405
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G ++R N LI+MY K G ++ AR+VF M +R V +W+ ++ A Q
Sbjct: 353 IHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQ 412
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
E+ T+F +M++ G+K N +T++ +L AC + + G+ ++ + G++ +
Sbjct: 413 VVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKE-IHAEVVKAGLLADLAVTN 471
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + + G +++A M ++ + V W L+GG
Sbjct: 472 ALMSMYFKCGSVEDAIRVFEGMSMR-DVVTWNTLIGG 507
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VHE+ + G + N+ + NTL+ +Y CG + AR++F + ++V +W+ MI G A G
Sbjct: 49 QVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRG 108
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A+EA F M + ++P+ TF+ +L AC ++ GR + E G+
Sbjct: 109 LAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGRE-IHVRVMEAGLANDTTVG 167
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + ++ G +++A M + + V W L G
Sbjct: 168 NALISMYAKCGSVRDARRVFDAMASR-DEVSWTTLTGA 204
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 79/157 (50%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++G + V N LI MY KCG + ARRVF M R +W+ + A G
Sbjct: 151 IHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGY 210
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+E+L +++ M++ ++P+ +T++ +L ACG + +++G++ ++ E +
Sbjct: 211 GEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQ-IHAHIVESEYHSDVRVST 269
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ + + G ++A E + + + + W ++ G
Sbjct: 270 ALTKMYMKCGAFKDAREVFECLSYR-DVIAWNTMIRG 305
>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
Length = 633
Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 172/351 (49%), Positives = 237/351 (67%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + +SG + V NT++ MY K G + AR+VF M++R + TW+ M+ LA +G
Sbjct: 284 VHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGL 343
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA+ F ++ + GI+ N +TF+ +L AC H G V EG+ +F M +Y + P+I+HY
Sbjct: 344 GKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYF-DMMKDYNVQPEIDHYV 402
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
VDLL RAG L+EA F+ MP++P VWGALLG CR+HKN + + A+ + +LDP
Sbjct: 403 SFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPD 462
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G V+L NIYA +W D ARVRK+M+ GVKK P S + ++ VH FVA D+THP+
Sbjct: 463 DTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPK 522
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ I++MWE++ +K GY+PNT+ VLL I E+E+E L HSEK+AL F L+N P G
Sbjct: 523 SGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGA 582
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRIMKN+R+C DCH+AFK +S++ REIVVRD NRFH F GSCSCGDYW
Sbjct: 583 SIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 633
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + ++S + + N+LI MY KCG + AR VF +M R V +W+ +I G A +
Sbjct: 82 IHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYM 141
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ M+ +PNG TF LL A G G G + +++ +Y +
Sbjct: 142 PAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQ-MHALAVKYNWDEDVYVGS 200
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ +R + A + + N V W AL+ G
Sbjct: 201 ALLDMYARCEQMDMAIMVFDRL-VSKNEVSWNALIAG 236
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 72/156 (46%), Gaps = 2/156 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + + ++ V + L+DMY +C ++ A VF + + +W+A+I G A
Sbjct: 182 QMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKA 241
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ L F +M G T+ + A +G +++G R+ ++ + G
Sbjct: 242 DGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQG-RWVHAHLIKSGQKLTAFVG 300
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
M+ + +++G + +A + M K + V W +L
Sbjct: 301 NTMLGMYAKSGSMVDARKVFDRMD-KRDLVTWNTML 335
>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
Length = 485
Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 171/335 (51%), Positives = 239/335 (71%), Gaps = 1/335 (0%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
L+DMY KCG ++ A +VF M R VFTW+AMI GLA+HG ++A++ F++M +
Sbjct: 151 TALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLM 210
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ VTFI LL AC H G VDEG F +M ++ I P++EHYGC+VDLL RA + +A
Sbjct: 211 PDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALA 270
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAER 198
FI NMPIK N V+W LLG CR + DLAE+ R++ +L+P + G +V+LSN+YA +
Sbjct: 271 FIENMPIKANSVLWATLLGACRSGGHFDLAEKIXRRVIELEPDSCGRYVMLSNLYAGVSQ 330
Query: 199 WEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKL 258
W+ ++RK M+N G++KTPG S I ++G++H+FVAGD +H Q E+I+ M E++ + L
Sbjct: 331 WDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNL 390
Query: 259 K-GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHA 317
G++P T+ VL DIEE+EKE L+ HSEKLA+ GL++TP G+PIRI+KNLRVC DCH+
Sbjct: 391 DGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHS 450
Query: 318 AFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
K+ S++ NREIV RDR+RFH F+ GSCSC D+W
Sbjct: 451 FLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 485
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 100/178 (56%), Gaps = 5/178 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H YS + G N+ V N ++DMY KC +E A+ VF + E+ V +W++M+ GLA G
Sbjct: 33 LHSYSKELGLDENLSVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGY 92
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+E+L F KM I+P+ +T +G+L AC G +D+G ++ + + ++ I +
Sbjct: 93 FQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALDQG-KYIHLLIDKFEINCDLVLET 151
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
+VD+ ++ G + A + R M ++ N W A++GG +H + E+A DQ++
Sbjct: 152 ALVDMYAKCGSIDLALQVFRRMRVR-NVFTWNAMIGGLAMHGH---GEDAISLFDQME 205
>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 239/351 (68%), Gaps = 2/351 (0%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIHG 60
H+Y F +N + ++DMY KCG ++ A +F + +T F +++MI GLA HG
Sbjct: 156 HQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHG 215
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ A+T F ++I G+KP+ VTF+G+L ACGH G ++EG++ F SM YGI PQ+EHY
Sbjct: 216 LGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHY 275
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLL R G L+EAY+ ++ MP + N V+W ALL CR H N+ + E A ++L +++
Sbjct: 276 GCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEA 335
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +V+LSNI A+A +WE+ +VRK+M + G++K PGWS I + G +H FVA D++HP
Sbjct: 336 QHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHP 395
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q ++I M + + +K GY+PNT+ V+ DI+E+EKE + HSEKLAL FGLM P
Sbjct: 396 QGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPT 455
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDY 351
IRI+KNLR+C DCH AFKL+SEI REI VRD RFH F+ GSCSC D+
Sbjct: 456 DTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDF 506
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 7/176 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + GF ++ V N LI +Y G L AR +F E R + +++ MI+G A Q
Sbjct: 57 VHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQ 116
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ-IEHY 120
+ AL F +M + VT + +L AC +G D G+R Y E G+ Q
Sbjct: 117 PESALCLFGEM----QNSDEVTLVAVLSACARLGAFDLGKR-LYHQYIENGVFNQNTILT 171
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIK-PNGVVWGALLGGCRVHKNIDLAEEASRQL 175
++D+ ++ G + A E R + G V+ +++ G H + A R+L
Sbjct: 172 AAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFREL 227
>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Cucumis sativus]
Length = 849
Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 164/352 (46%), Positives = 242/352 (68%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SG + N VCN LI MY +CG +E A +VF +ME+R V +W+++I G A HG
Sbjct: 498 QIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHG 557
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A +AL F+KM+E G++PN VT+I +L AC H+G V+EG + F SM TE+G+IP++EHY
Sbjct: 558 FATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHY 617
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVD+L R+G L EA +FI +MP K + +VW LG CRVH N++L + A++ + + +P
Sbjct: 618 ACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEP 677
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +++LSN+YA +W++V+ +RK M+ + K G S + V+ VH+F GD +HP
Sbjct: 678 HDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGDTSHP 737
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+A +I+ + L +K GY+PN VL D+EE++KEK L++HSEK+A+ FGL++T
Sbjct: 738 KAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKM 797
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLR+C DCH+A K IS REI+VRD NRFH + G CSC +YW
Sbjct: 798 KPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 71/158 (44%), Gaps = 5/158 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM-EERTVFTWSAMIQGLAIHG 60
VHE QS + + N+LI +Y KCG E A +F M R + +WSAM+ A +
Sbjct: 88 VHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNN 147
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
AL +F MIE G PN F AC +V G F + G +
Sbjct: 148 MGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIF-GFVVKTGYLQSDVCV 206
Query: 121 GC-MVDLLSRA-GFLQEAYEFIRNMPIKPNGVVWGALL 156
GC ++D+ + G L A++ MP + N V W ++
Sbjct: 207 GCGLIDMFVKGRGDLVSAFKVFEKMP-ERNAVTWTLMI 243
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+V ++ + GF V N+LI MY + G ++ AR+ F + E+ + +++ +I A +
Sbjct: 397 QVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNL 456
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++EAL FN++ + G+ + TF LL +G + +G + ++ + G+
Sbjct: 457 NSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQ-IHARVIKSGLKLNQSVC 515
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++ + SR G ++ A++ +M + N + W +++ G H
Sbjct: 516 NALISMYSRCGNIESAFQVFEDMEDR-NVISWTSIITGFAKH 556
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 122/302 (40%), Gaps = 54/302 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKC---GCLEGARRVFIEMEERTVFTWSAMIQGLA 57
++H + + G + V LI+MY KC G + AR++F ++ + VF+W+AMI G
Sbjct: 292 QLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYV 351
Query: 58 IH-GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFY----------- 105
G +EAL F MI + PN TF L AC ++ + G + F
Sbjct: 352 QKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVN 411
Query: 106 ----SMTTEYGIIPQIE---------------HYGCMVDLLSRAGFLQEAYEF---IRNM 143
S+ + Y +I+ Y ++D ++ +EA E I +
Sbjct: 412 CVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQ 471
Query: 144 PIKPNGVVWGALLGGCRVHKNIDLAEEA-SRQLDQLDPLNNGYHVVLSNIYAEAERWEDV 202
+ + + +LL G I E+ +R + LN L ++Y+ E
Sbjct: 472 GMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESA 531
Query: 203 ARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYI 262
+V + M + + W+SI + G H A + +++ K+L+ +G
Sbjct: 532 FQVFEDMED---RNVISWTSI---------ITGFAKHGFATQALELFHKMLE----EGVR 575
Query: 263 PN 264
PN
Sbjct: 576 PN 577
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 4/141 (2%)
Query: 21 LIDMYVKC-GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP 79
LIDM+VK G L A +VF +M ER TW+ MI L G A EA+ F +MI G +P
Sbjct: 210 LIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEP 269
Query: 80 NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE--AY 137
+ T G++ AC +M + G++ +S +G+ C++++ ++ A
Sbjct: 270 DRFTLSGVISACANMELLLLGQQ-LHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAA 328
Query: 138 EFIRNMPIKPNGVVWGALLGG 158
I + + N W A++ G
Sbjct: 329 RKIFDQILDHNVFSWTAMITG 349
>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
Length = 693
Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 174/351 (49%), Positives = 234/351 (66%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H YS + +++ V LIDMY KCG + ARR+F +R V TW+AMI G HG
Sbjct: 344 IHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGF 403
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ A+ F +M G PN TF+ +L AC H G VDEG+++F SM +YG+ P +EHYG
Sbjct: 404 GQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYG 463
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
MVDLL RAG L EA+ FI+NMPI+P V+GA+LG C++HKN++LAEE+++ + +L P
Sbjct: 464 TMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPE 523
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
YHV+L+NIYA A W+DVARVR M G++KTPGWS I + VH F +G H
Sbjct: 524 EGVYHVLLANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQH 583
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A+ I+ KL++ +K GY+P+T + D+E+ K + L HSEKLA+ +GL+ T PGT
Sbjct: 584 AKDIYARLAKLIEEIKDMGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGT 642
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I+I KNLRVC DCH A KLIS + REI++RD RFH F+ G CSCGDYW
Sbjct: 643 TIQIKKNLRVCNDCHNATKLISLLTGREIIMRDIQRFHHFKDGKCSCGDYW 693
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 89/181 (49%), Gaps = 3/181 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++ ++G + V ++D Y KCG +E AR VF M R +W+AMI G A +G
Sbjct: 141 VHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGN 200
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A EA+ F +M++ G+ + + L ACG +G++DE RR + + G+ +
Sbjct: 201 ATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRR-VHELLVRVGLSSNVSVTN 259
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE--ASRQLDQLD 179
++ ++ A + + K + W A++ G ++ + AE A QL+ +
Sbjct: 260 ALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVR 319
Query: 180 P 180
P
Sbjct: 320 P 320
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 4/159 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH G L +MY KC ARRVF M R W+A++ G A +G
Sbjct: 38 VHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRMPSRDRVAWNAVVAGYARNGL 97
Query: 62 AKEALTSFNKMI--EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
A+ + +M E G +P+ VT + +L AC + R ++ G+ +
Sbjct: 98 PSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHACRE-VHAFALRAGLDELVNV 156
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D + G ++ A MP++ N V W A++ G
Sbjct: 157 STAVLDAYCKCGAVEAARAVFDCMPVR-NSVSWNAMIDG 194
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 76/163 (46%), Gaps = 3/163 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM-EERTVFTWSAMIQGLAIH 59
RVHE + G N+ V N LI Y KC + A +VF E+ ++T +W+AMI G +
Sbjct: 241 RVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQN 300
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
++A F +M ++P+ T + ++ A + + R+ + + + + +
Sbjct: 301 ECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQA-RWIHGYSIRHQLDQDVYV 359
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ S+ G + A + + + + W A++ G H
Sbjct: 360 LTALIDMYSKCGRVSIARRLFDSARDR-HVITWNAMIHGYGSH 401
>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 175/357 (49%), Positives = 245/357 (68%), Gaps = 7/357 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIH 59
+HEY ++G + ++ ++DMY KCGCLE A +VF + + R + +W+ MI GLA+H
Sbjct: 277 IHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMH 336
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G + A+ F +M + P+ +TF+ LL AC H G V+EGR +F M YGI P++EH
Sbjct: 337 GNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEH 396
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
+GCMVDLL RAG + EA + I MP+ P+ V G LLG C+ H+NI+L EE R++ +L+
Sbjct: 397 FGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGACKKHRNIELGEEIGRRVIELE 456
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N+G +V+L+N+YA A +WED A+VRKLM + GVKK PG+S I + G VHEF+AG+ H
Sbjct: 457 PNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAPGFSMIELQGTVHEFIAGERNH 516
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVL----LDIEEKEKEKFLYRHSEKLALTFGLM 295
PQA+++ ++L+ +K GY+ +T+ VL D EE++ E LY HSEKLA+ FGL
Sbjct: 517 PQAKELHAKVYEMLEHLKSVGYVADTNGVLHGHDFD-EEEDGENPLYYHSEKLAIAFGLS 575
Query: 296 NTPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T PG +RI+KNLR+CEDCH A KLIS + +REI+VRDR RFH F+ G CSC DYW
Sbjct: 576 RTKPGETLRILKNLRICEDCHHACKLISTVFDREIIVRDRTRFHRFKMGQCSCQDYW 632
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 91/211 (43%), Gaps = 38/211 (18%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + GF + N+LI MYV LE ARRVF + +W+++I G + G
Sbjct: 143 QIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWG 202
Query: 61 QAKEALT-----------SFNKMIEIGIKPNGV-------------------TFIG--LL 88
EA T S+N M+ ++ N F+ +L
Sbjct: 203 LIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTML 262
Query: 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPN 148
AC +G +D+G ++ + GI + +VD+ + G L++A + ++P+
Sbjct: 263 SACTGLGALDQG-KWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCR 321
Query: 149 GV-VWGALLGGCRVHKN----IDLAEEASRQ 174
+ W ++GG +H N I L +E RQ
Sbjct: 322 WISSWNCMIGGLAMHGNGEAAIQLFKEMERQ 352
>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
Length = 539
Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 172/354 (48%), Positives = 248/354 (70%), Gaps = 3/354 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME--ERTVFTWSAMIQGLAIH 59
+H Y ++S + N R+ +L+DMY KCG ++ A +VF + + V+ W+AMI G A+H
Sbjct: 186 IHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMH 245
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G++KEA+ F +M + PN VTF+ LL+AC H V+EGR +F SM + YGI P+IEH
Sbjct: 246 GKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEH 305
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YGCMVDLL R+G L+EA E + NMP+ P+ +WGALLG CR+HK+I+ + + + +LD
Sbjct: 306 YGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELD 365
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
+ G HV+L+N+Y+ + +W++ VR+ + G KKTPG SSI ++GV H+F+ GD +H
Sbjct: 366 SDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSH 425
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDI-EEKEKEKFLYRHSEKLALTFGLMNTP 298
PQ ++++ +++ +K GY+P VLLDI +E++KE L +HSEKLA+ FGL+NTP
Sbjct: 426 PQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINTP 485
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PGT IRI+KNLRVC DCH A K IS++ REI+VRDR R+H F+ G CSC DYW
Sbjct: 486 PGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 539
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 35/176 (19%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N +I YV G + A+ +F EM ER V +W+ +I G G KEAL F++M++ G
Sbjct: 102 NIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPP 161
Query: 79 PNGVTFIGLLHACGHMGWVDEGR---------------RFFYSMT--------------- 108
PN T L AC ++ +D+GR R S+
Sbjct: 162 PNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKV 221
Query: 109 --TEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIK---PNGVVWGALLGGC 159
EYG+ ++ + M+ + G +EA + M ++ PN V + ALL C
Sbjct: 222 FHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNAC 277
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 164/340 (48%), Positives = 246/340 (72%)
Query: 5 YSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKE 64
Y +++ + + + N LIDMY KCG +E A+++F EM+++ FTW+AMI GLA +G +E
Sbjct: 397 YIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEE 456
Query: 65 ALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMV 124
ALT F+ M+E + P+ +T+IG++ AC H+G V +G+ FF +M ++GI P + HYGCMV
Sbjct: 457 ALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMV 516
Query: 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNG 184
DLL RAG L+EA E I NMP+KPN +VWG+LLG CRVHKN+ LAE A+ ++ +L+P N
Sbjct: 517 DLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELEPENGA 576
Query: 185 YHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEK 244
+V+L NIYA ++W+++ VRK+M G+KK PG S + ++G+V+EFVAGD++HPQ+++
Sbjct: 577 VYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDKSHPQSKE 636
Query: 245 IFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIR 304
I+ E + + GY P+TS V LD+ E++KE LY HSEKLA+ + L+++ G IR
Sbjct: 637 IYAKLENMKQDLSNAGYSPDTSEVFLDVGEEDKETALYMHSEKLAIAYALISSGKGVTIR 696
Query: 305 IMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAG 344
I+KNLR+C DCH ++S++ NRE++VRD+ RFH F+ G
Sbjct: 697 IVKNLRMCVDCHHMAMVVSKVYNRELIVRDKTRFHHFRHG 736
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 35/188 (18%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLA----- 57
++Y + N+ + N LIDM+ CG ++ AR VF EM+ R V +W++++ G A
Sbjct: 263 NKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRI 322
Query: 58 ---------------------IHG-----QAKEALTSFNKMIEIGIKPNGVTFIGLLHAC 91
I G + KE LT F M +KP+ T + +L AC
Sbjct: 323 DLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTAC 382
Query: 92 GHMGWVDEGRRFFYSMTTEYGIIPQIEHYG-CMVDLLSRAGFLQEAYEFIRNMPIKPNGV 150
H+G ++ G + + I G ++D+ + G +++A + M K +
Sbjct: 383 AHLGALELGE--WAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQ-KKDKF 439
Query: 151 VWGALLGG 158
W A++ G
Sbjct: 440 TWTAMIVG 447
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 89/205 (43%), Gaps = 8/205 (3%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQG---LAIHGQAKEALTSFN 70
N+ V I ++ CG + AR++F + V TW+ ++ G + ++K
Sbjct: 170 NLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEME 229
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
K E + PN VT + +L AC + + G+ + E + P + ++D+ +
Sbjct: 230 KKCEC-VSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASC 288
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190
G + A M + + + W +++ G IDLA + Q+ + D ++ +
Sbjct: 289 GEMDAARGVFDEMKTR-DVISWTSIVTGFANTCRIDLARKYFDQMPERDYVS---WTAMI 344
Query: 191 NIYAEAERWEDVARVRKLMRNLGVK 215
+ Y R+++V + + M+ VK
Sbjct: 345 DGYLRMNRFKEVLTLFRDMQMSNVK 369
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88
AR+VF E+ + +VF W+ MI+G + ++ ++ + M+ IKP+G TF LL
Sbjct: 88 ARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLL 142
>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
Length = 922
Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 170/352 (48%), Positives = 236/352 (67%), Gaps = 1/352 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G + V N LI MY KCGC + +RR+F MEER +FTW+ +I G A HG
Sbjct: 572 QIHTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYAQHG 630
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ + M G+ PN VTF+GLL+AC H G VDEG +FF SM+ +YG+ P EHY
Sbjct: 631 LGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHY 690
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL R G +Q A +FI +MPI+P+ V+W ALLG C++HKN ++ + A+ +L +++P
Sbjct: 691 ACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEP 750
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +V+LSNIY+ W +VA VRK+M+ GV K PG S + +H FV GD+ H
Sbjct: 751 SNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHE 810
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q E+I E+L +K GY+P+T VL DI+E++KE L HSEKLA+ + L+ TP G
Sbjct: 811 QIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKG 870
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PI+I+KNLR+C DCH K +S + R+I +RD NRFH F+ GSCSC D+W
Sbjct: 871 MPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 89/193 (46%), Gaps = 9/193 (4%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N LI Y++ G + A+ +F +M R +W+ MI G A +G+++EAL ++ G+
Sbjct: 357 NALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGML 416
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC--MVDLLSRAGFLQEA 136
P+ + + AC ++ ++ G + +S+ + G Q + C ++ + + ++ A
Sbjct: 417 PSLSSLTSIFFACSNIVALETGTQ-VHSLAVKVGC--QFNSFACNALITMYGKCRNMEYA 473
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
+ M K + V W + L + DL +EA D + ++ + + YA A
Sbjct: 474 RQVFSRMVTK-DIVSWNSFLAALVQN---DLLDEARNTFDNMLSRDDVSWTTIISAYAHA 529
Query: 197 ERWEDVARVRKLM 209
E+ + K M
Sbjct: 530 EQSNEAMGAFKTM 542
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + G + N CN LI MY KC +E AR+VF M + + +W++ + L +
Sbjct: 440 QVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQND 499
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY 111
EA +F+ M + + V++ ++ A H +E F +M E+
Sbjct: 500 LLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEH 546
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 6/136 (4%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
RN N +I YV+ G + ARR+F M R V +W++M+ G Q +A F
Sbjct: 123 LERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFE 182
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
KM E N V++ ++ G + + F M E G++P ++ + +
Sbjct: 183 KMPE----RNLVSWTVMISGYGRIENHGKAWDIFCKMHRE-GLLPDQSNFASALSAVKGL 237
Query: 131 GFLQEAYEFIRNMPIK 146
G L + E +R + +K
Sbjct: 238 GNL-DVLESLRVLALK 252
>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
Length = 1229
Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 169/354 (47%), Positives = 238/354 (67%), Gaps = 5/354 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y + N+ + N LIDMY KCGCLE AR VF M+ R V +W+AMI G
Sbjct: 330 KIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSG 389
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +A+ F+K+ + G+ P+ + F+ L AC H G ++EGR F MT Y I P++EH
Sbjct: 390 RGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHL 449
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG ++EAY FI++M ++PN VWGALLG CRVH + D+ A+ +L QL P
Sbjct: 450 ACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAP 509
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+GY+V+LSNIYA+A RWE+V +R +M++ G+KK PG S++ V+ ++H F+ GD +HP
Sbjct: 510 EQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHP 569
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP-- 298
Q+++I++ + L+ MK GY+P++ L D+EE++KE L HSEKLA+ F LMNT
Sbjct: 570 QSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEE 629
Query: 299 ---PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCG 349
IRI KNLR+C DCH A KLIS+I +REI++RD NRFH F+ G CSC
Sbjct: 630 EEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCA 683
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 113/272 (41%), Gaps = 23/272 (8%)
Query: 18 CNT-----LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
CN+ L+ Y + AR+VF E+ ER V + MI+ +G E + F M
Sbjct: 72 CNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTM 131
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
++P+ TF +L AC G + GR+ S T+ G+ + +V + + GF
Sbjct: 132 CGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGS-ATKVGLSSTLFVGNGLVSMYGKCGF 190
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNI 192
L EA + M + + V W +L+ G ++ D A E R+++ + ++ +
Sbjct: 191 LSEARLVLDEMS-RRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLP 249
Query: 193 YAEAERWEDVARVRKLMRNLGVKKTPGW---------SSITVDGV-VHEFVAGDETHPQA 242
E+V V+ + +G K W +++ V+ V ++ + D P A
Sbjct: 250 AVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDA 309
Query: 243 EKIFQMWEKLLD------GMKLKGYIPNTSVV 268
I + D G K+ GYI ++
Sbjct: 310 VSITSVLPACGDTSALSLGKKIHGYIERKKLI 341
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 6/162 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G + V N L+ MY KCG L AR V EM R V +W++++ G A +
Sbjct: 161 KIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQ 220
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +AL +M + I + T LL A + E + M + G + +
Sbjct: 221 RFDDALEVCREMESVKISHDAGTMASLLPAVSNT--TTENVMYVKDMFFKMG-KKSLVSW 277
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGC 159
M+ + + EA E M +P+ V ++L C
Sbjct: 278 NVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPAC 319
>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 572
Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 175/353 (49%), Positives = 246/353 (69%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM-EERTVFTWSAMIQGLAIHG 60
VH Y ++ G +I + LIDMY KCG LE A+RVF + ++ V +SAMI LA++G
Sbjct: 220 VHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMICCLAMYG 279
Query: 61 QAKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
E F++M I PN VTF+G+L AC H G +++G+ +F MT E+GI P I+H
Sbjct: 280 LTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITPSIQH 339
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YGCMVDL R+G ++EA FI +MP++P+ ++WG+LL G R+ +I E A ++L +LD
Sbjct: 340 YGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELD 399
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P+N+G +V+LSN+YA+ RW +V R+R M G+KK PG S + V+GVVHEFV GDE+
Sbjct: 400 PMNSGAYVLLSNVYAKTGRWIEVKRIRHEMEVKGIKKVPGCSYVEVEGVVHEFVVGDESQ 459
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
++E+I+ M E+++ ++ GY+ +T VLLD+EEK+KE L HSEKLA+ F LM T P
Sbjct: 460 QESERIYAMLEEIMQRLREAGYVSDTKEVLLDLEEKDKEMALSYHSEKLAIAFCLMKTRP 519
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GTP+RI+KNLR+C DCH K+IS++ +REIVVRD NRFH F GSCSC D+W
Sbjct: 520 GTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFSDGSCSCRDFW 572
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+++ N++++ Y K G + AR++F EM ER V +WS +I G + G+ KEAL F +M
Sbjct: 125 KDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREM 184
Query: 73 I-----EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
E+ + PN T +L ACG +G +++G ++ +S +YG+ I ++D+
Sbjct: 185 QLPKPNEVFVSPNKFTMSTVLSACGRLGALEQG-KWVHSYIDKYGVEIDIVLGTALIDMY 243
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
++ G L+ A + K + + A++
Sbjct: 244 AKCGSLERAKRVFDALGSKKDVKAYSAMI 272
>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
gi|219885099|gb|ACL52924.1| unknown [Zea mays]
Length = 530
Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 172/351 (49%), Positives = 237/351 (67%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + +SG + V NT++ MY K G + AR+VF M++R + TW+ M+ LA +G
Sbjct: 181 VHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGL 240
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA+ F ++ + GI+ N +TF+ +L AC H G V EG+ +F M +Y + P+I+HY
Sbjct: 241 GKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYF-DMMKDYNVQPEIDHYV 299
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
VDLL RAG L+EA F+ MP++P VWGALLG CR+HKN + + A+ + +LDP
Sbjct: 300 SFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPD 359
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G V+L NIYA +W D ARVRK+M+ GVKK P S + ++ VH FVA D+THP+
Sbjct: 360 DTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPK 419
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ I++MWE++ +K GY+PNT+ VLL I E+E+E L HSEK+AL F L+N P G
Sbjct: 420 SGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGA 479
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRIMKN+R+C DCH+AFK +S++ REIVVRD NRFH F GSCSCGDYW
Sbjct: 480 SIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 530
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 2/135 (1%)
Query: 24 MYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVT 83
MY KCG + AR VF +M R V +W+ +I G A + EA+ M+ +PNG T
Sbjct: 1 MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60
Query: 84 FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM 143
F LL A G G G + +++ +Y + ++D+ +R + A + +
Sbjct: 61 FTSLLKATGACGGCSIGEQ-MHALAVKYNWDEDVYVGSALLDMYARCEQMDMAI-MVFDR 118
Query: 144 PIKPNGVVWGALLGG 158
+ N V W AL+ G
Sbjct: 119 LVSKNEVSWNALIAG 133
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 72/156 (46%), Gaps = 2/156 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + + ++ V + L+DMY +C ++ A VF + + +W+A+I G A
Sbjct: 79 QMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKA 138
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ L F +M G T+ + A +G +++G R+ ++ + G
Sbjct: 139 DGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQG-RWVHAHLIKSGQKLTAFVG 197
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
M+ + +++G + +A + M K + V W +L
Sbjct: 198 NTMLGMYAKSGSMVDARKVFDRMD-KRDLVTWNTML 232
>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
Length = 886
Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 239/352 (67%), Gaps = 5/352 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R HEY + F V N LIDMY KCG ++ AR VF M +R +W++M+ G +HG
Sbjct: 540 RHHEYESSVYF-----VANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHG 594
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ KEAL F+KM + G P+ ++F+ LL+AC H G VD+G +F M ++YG+I +HY
Sbjct: 595 RGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHY 654
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C++DLL+R+G L +A++ I+ MP++P+ +W ALL CRVH N++LAE A +L +
Sbjct: 655 ACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKLVSMKA 714
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G + ++SNIYA A RW+DVAR+R+LM+ G+KK PG S + F GD +HP
Sbjct: 715 ENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHP 774
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ + E+L+ +K+ GY+P T+ L D++++EK L HSEKLAL +GL+ T PG
Sbjct: 775 LSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLTEHSEKLALAYGLLTTSPG 834
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH+AF IS+IV+ EI+VRD +RFH F+ GSCSCG YW
Sbjct: 835 CPIRITKNLRVCGDCHSAFIYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 6/151 (3%)
Query: 17 VCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
V N LIDMY KC + AR +F I ER V TW+ MI G A +G + +AL F++MI
Sbjct: 444 VHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMIS 503
Query: 75 --IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG-CMVDLLSRAG 131
+ PN T +L AC H+ + G++ +T + + C++D+ S+ G
Sbjct: 504 KPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCG 563
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ A +MP K N V W +++ G +H
Sbjct: 564 DVDTARNVFDSMP-KRNEVSWTSMMSGYGMH 593
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 89/204 (43%), Gaps = 47/204 (23%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER----------------- 44
+H Y+ ++G + VCN LID Y KCG ++ A VF ME +
Sbjct: 281 IHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGK 340
Query: 45 ------------------TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIG 86
V TWSA+I G A G +EAL +F +MI G +PN VT I
Sbjct: 341 FGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIIS 400
Query: 87 LLHACGHMGWVDEG--------RRFFYSMTTEYGIIPQIEH---YGCMVDLLSRAGFLQE 135
LL AC +G + +G ++ S+ ++G E + ++D+ S+ +
Sbjct: 401 LLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKA 460
Query: 136 AYEFIRNMPIKP-NGVVWGALLGG 158
A ++P + N V W ++GG
Sbjct: 461 ARTIFNSIPRRERNVVTWTVMIGG 484
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 11/159 (6%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEA 65
+GF N+ VCN L+ MY + G LE A VF E+ + V +W++++ + A
Sbjct: 178 NGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTA 237
Query: 66 LTSFNKMIEI------GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
L F++M I + + ++ + +L AC + + + + +S G
Sbjct: 238 LDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKE-IHSYAIRNGTFADAFV 296
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D ++ G +++A M K + V W A++ G
Sbjct: 297 CNALIDTYAKCGSMKDAVNVFNVMEFK-DVVSWNAMVTG 334
Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 1/116 (0%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
++ Y+ CG A V + W+ +++ G+ A+ +M+ G KP+
Sbjct: 89 VVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPD 148
Query: 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
T L ACG + G F+ + G + +V + SR+G L++A
Sbjct: 149 HFTLPYALKACGELPSYRSGSA-FHGLICCNGFESNVFVCNALVAMYSRSGSLEDA 203
>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
Length = 816
Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 169/339 (49%), Positives = 230/339 (67%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
+I V L+DMY KCG L A +F E+ ++ +W+A+I +HG +A+ F +M
Sbjct: 478 DIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQ 537
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
G+KP+ +TF+ LL AC H G VDEG+ F M YGI P ++HYGCMVDL RAG L
Sbjct: 538 SEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHL 597
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIY 193
++A+ F++NMP++P+ VWGALLG CR+H+N++L S L +++ N GY+V+LSNIY
Sbjct: 598 EKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIY 657
Query: 194 AEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLL 253
A+ WE V VR L R+ G+KKTPGWSSI VD + F G++THP+ E+I+ L
Sbjct: 658 AKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVFYTGNQTHPKCEEIYSELRNLT 717
Query: 254 DGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCE 313
MK GY+P+ + VL D+E+ EKE L HSE+LA+ FG+++TPP T ++I KNLRVC
Sbjct: 718 AKMKSIGYVPDYNFVLQDVEDDEKENILTSHSERLAMAFGIISTPPKTTLQIFKNLRVCG 777
Query: 314 DCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
DCH A K IS+I REI+VRD NRFH F+ G CSCGDYW
Sbjct: 778 DCHNATKFISKITEREIIVRDSNRFHHFKDGVCSCGDYW 816
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 4/170 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ + G ++ VCN LI+MY K G L A +F +M+ R + +W++++ + +
Sbjct: 262 IHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKK 321
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AL +NKM IG+ P+ +T + L +G R +T + I
Sbjct: 322 PVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGN 381
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
++D+ ++ GF+ A + +P+K + + W +L+ G + LA EA
Sbjct: 382 AIIDMYAKLGFIDSARKVFEGLPVK-DVISWNSLITG---YSQNGLANEA 427
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
F +I + N +IDMY K G ++ AR+VF + + V +W+++I G + +G A EA+ ++
Sbjct: 373 FLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYS 432
Query: 71 KM-IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
M G PN T++ +L A +G + +G + + + + I C+VD+ +
Sbjct: 433 SMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNF-LYFDIFVSTCLVDMYGK 491
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
G L +A +P + V W A++ +H
Sbjct: 492 CGKLADALSLFYEVP-HQSSVSWNAIISCHGLH 523
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 84/176 (47%), Gaps = 6/176 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H SG ++I + LI+ Y G + AR F +++ + V+TW++MI A G
Sbjct: 61 QLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIG 120
Query: 61 QAKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
A+ FN+ + ++ + TF ++ ACG++ D+GR+ + + + G +
Sbjct: 121 HFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNL---DDGRK-VHCLVLKLGFECDVYI 176
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
+ SR GF+ A NM I+ G W A++ G ++ + A E ++
Sbjct: 177 AASFIHFYSRFGFVSLACNLFDNMMIRDIG-TWNAMISGFYLNGKVAEALEVFDEM 231
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 2/163 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + GF ++ + + I Y + G + A +F M R + TW+AMI G ++G
Sbjct: 160 KVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNG 219
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EAL F++M + + VT LL C + + G + + G+ +
Sbjct: 220 KVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISG-VLIHVYAIKLGLEFDLFVC 278
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHK 163
++++ ++ G L+ A M ++ + V W +LL +K
Sbjct: 279 NALINMYAKFGELRSAETIFNQMKVR-DIVSWNSLLAAFEQNK 320
>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
Length = 922
Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 170/352 (48%), Positives = 236/352 (67%), Gaps = 1/352 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G + V N LI MY KCGC + +RR+F MEER +FTW+ +I G A HG
Sbjct: 572 QIHTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYAQHG 630
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ + M G+ PN VTF+GLL+AC H G VDEG +FF SM+ +YG+ P EHY
Sbjct: 631 LGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHY 690
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL R G +Q A +FI +MPI+P+ V+W ALLG C++HKN ++ + A+ +L +++P
Sbjct: 691 ACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEP 750
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +V+LSNIY+ W +VA VRK+M+ GV K PG S + +H FV GD+ H
Sbjct: 751 SNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHE 810
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q E+I E+L +K GY+P+T VL DI+E++KE L HSEKLA+ + L+ TP G
Sbjct: 811 QIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKG 870
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PI+I+KNLR+C DCH K +S + R+I +RD NRFH F+ GSCSC D+W
Sbjct: 871 MPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 89/193 (46%), Gaps = 9/193 (4%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N LI Y++ G + A+ +F +M R +W+ MI G A +G+++EAL ++ G+
Sbjct: 357 NALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGML 416
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC--MVDLLSRAGFLQEA 136
P+ + + AC ++ ++ G + +S+ + G Q + C ++ + + ++ A
Sbjct: 417 PSLSSLTSIFFACSNIVALETGTQ-VHSLAVKVGC--QFNSFACNALITMYGKCRNMEYA 473
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
+ M K + V W + L + DL +EA D + ++ + + YA A
Sbjct: 474 RQVFSRMVTK-DIVSWNSFLAALVQN---DLLDEARNTFDNMLSRDDVSWTTIISAYAHA 529
Query: 197 ERWEDVARVRKLM 209
E+ + K M
Sbjct: 530 EQSNEAMGAFKTM 542
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + G + N CN LI MY KC +E AR+VF M + + +W++ + L +
Sbjct: 440 QVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQND 499
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY 111
EA +F+ M + + V++ ++ A H +E F +M E+
Sbjct: 500 LLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEH 546
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 6/136 (4%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
RN N +I YV+ G + ARR+F M R V +W++M+ G Q +A F
Sbjct: 123 LERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFE 182
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
KM E N V++ ++ G + + F M E G++P ++ + +
Sbjct: 183 KMPE----RNLVSWTVMISGYGRIENHGKAWDIFCKMHRE-GLLPDQSNFASALSAVKGL 237
Query: 131 GFLQEAYEFIRNMPIK 146
G L + E +R + +K
Sbjct: 238 GNL-DVLESLRVLALK 252
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 170/352 (48%), Positives = 245/352 (69%), Gaps = 6/352 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+ +N S R +LIDMY KCG +E A +VF + +++ +W+AMI G A+HG
Sbjct: 396 RLKSATNASSLR------TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHG 449
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A A F++M +IGI+P+ +TF+GLL AC G +D GR F +MT +Y I P++EHY
Sbjct: 450 RADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHY 509
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCM+DLL +G +EA E I NM ++P+GV+W +LL C++ N++L E ++ L +++P
Sbjct: 510 GCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEP 569
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +V+LSNIYA A RW +VA++R L+ + G+KK PG SSI +D VVHEF+ GD+ HP
Sbjct: 570 ENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHP 629
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ M E++ ++ G++P+TS VL ++EE+ KE L HSEKLA+ FGL++T PG
Sbjct: 630 RNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPG 689
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T + I+KNLRVC +CH A KLIS+I REI+ RDR RFH F+ G CSC DYW
Sbjct: 690 TKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 2/169 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + GF N+++ N+L+D+Y KCG LE A +F + + V +W+ +I G
Sbjct: 287 QVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMN 346
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
KEAL F +M+ G +PN VT + +L AC H+G +D GR +
Sbjct: 347 LYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSL 406
Query: 121 -GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++D+ ++ G ++ A++ + N + + W A++ G +H D A
Sbjct: 407 RTSLIDMYAKCGDIEAAHQ-VFNSILHKSLSSWNAMIFGFAMHGRADAA 454
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 86/159 (54%), Gaps = 5/159 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ LI Y G +E A+++F E+ + V +W+AMI G A G KEAL F +M
Sbjct: 198 RDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEM 257
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
++ I+P+ T + ++ AC G ++ GR+ +S ++G ++ ++DL S+ G
Sbjct: 258 MKTNIRPDESTMVTVVSACAQSGSIELGRQ-VHSWIDDHGFGSNLKIVNSLMDLYSKCGE 316
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
L+ A + K + + W L+GG + +++L +EA
Sbjct: 317 LETACGLFEGLLYK-DVISWNTLIGG---YTHMNLYKEA 351
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 97/219 (44%), Gaps = 12/219 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEG---ARRVFIEMEERTVFTWSAMIQGLAI 58
+H ++G + L+++ V +G A VF ++E + W+ M +G A+
Sbjct: 52 IHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 111
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
AL + MI +G+ PN TF LL +C EG++ + + G +
Sbjct: 112 SSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQ-IHGHVLKLGYDLDLF 170
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ ++ + + G L++A + P + + V + AL+ G I E A + D++
Sbjct: 171 VHTSLISVYVQNGRLEDARKVFDRSPHR-DVVSYTALIKGYASRGYI---ESAQKLFDEI 226
Query: 179 DPLNN--GYHVVLSNIYAEAERWEDVARVRKLMRNLGVK 215
P+ + ++ ++S YAE +++ + K M ++
Sbjct: 227 -PVKDVVSWNAMISG-YAETGNYKEALELFKEMMKTNIR 263
>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 174/351 (49%), Positives = 242/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V Y ++ N V LI+MY +CG ++ A+RVF +M+E+ V T+++MI G A+HG+
Sbjct: 271 VRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGK 330
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ EA+ F +I+ G P+ VTF+G+L+AC H G + G F+SM +YGI PQIEHYG
Sbjct: 331 SVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYG 390
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL R G L+EAY FIR M + P+ V+ GALL C++H N++LAE ++ L
Sbjct: 391 CMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVACKNA 450
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +++LSN Y+ + +W++ A VR MR G++K PG SSI V+ +HEF+ GD HPQ
Sbjct: 451 DSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNNEIHEFLLGDLRHPQ 510
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
EKI++ E+L ++L+GY P T VVL DIE+ EKE L HSE+LA+ +GL++T P T
Sbjct: 511 KEKIYKKLEELNQILRLEGYTPATEVVLHDIEKSEKEWALAIHSERLAICYGLISTKPLT 570
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+R++KNLRVC DCH KLIS I R+IVVRDRNRFH F+ G CSCGDYW
Sbjct: 571 TLRVVKNLRVCNDCHLTIKLISNITRRKIVVRDRNRFHHFENGVCSCGDYW 621
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 25/189 (13%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFT------------- 48
VH + G N + LI++Y KCG E ARRVF EM ER V
Sbjct: 152 VHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGI 211
Query: 49 -----WSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF 103
W+AMI GL +G++ AL F M + PN VT + +L AC +G + G R+
Sbjct: 212 KDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLG-RW 270
Query: 104 FYSMTTEYGIIPQIEHY--GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRV 161
S ++ I ++ H+ G ++++ SR G + EA M K N + + +++ G +
Sbjct: 271 VRSYMDKHRI--ELNHFVGGALINMYSRCGDIDEAQRVFEQMKEK-NVITYNSMIMGFAL 327
Query: 162 H-KNIDLAE 169
H K+++ E
Sbjct: 328 HGKSVEAVE 336
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 76/191 (39%), Gaps = 25/191 (13%)
Query: 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
+RVC+ L + A ++F + V+ ++A+I GL + + + + +MI
Sbjct: 71 LRVCSNL-------NSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMIN 123
Query: 75 IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ 134
+ P+ +L ACG + EGR +S + G+ +++L + G +
Sbjct: 124 SSLVPDSYAVTSVLKACGCHLALKEGRE-VHSQVLKLGLSSNRSIRIKLIELYGKCGAFE 182
Query: 135 EAYEFIRNMPIK-----------------PNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
+A MP + + V W A++ G + + A E R + +
Sbjct: 183 DARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQR 242
Query: 178 LDPLNNGYHVV 188
D + N +V
Sbjct: 243 EDVMPNEVTIV 253
>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
Length = 603
Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 244/352 (69%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+Y+ + F + ++V LIDM+ KCG L+ A +F +M + WSAMI A HG+
Sbjct: 252 IHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGK 311
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A++++ F +M ++P+ +TF+GLL+AC H G V+EGR++F M +++GI+P I+HYG
Sbjct: 312 AEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYG 371
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
MVDLLS AG L++AYEFI +PI P ++W LL C H N+DLAE+ S ++ +LD
Sbjct: 372 SMVDLLSXAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDS 431
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G +V+LSN+YA ++WE V +RK+M++ K PG SSI V+ VVHEF +GD
Sbjct: 432 HGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSA 491
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVL-LDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
K+ + ++++ +KL GY+P+TS+V+ ++ ++EKE L HSEKLA+TFGL+NTPPG
Sbjct: 492 TTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPG 551
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IR++KNLRVC DCH A KLIS I R++V RD RFH F+ G CSCGD+W
Sbjct: 552 TTIRVVKNLRVCRDCHNAAKLISLIFGRKVVXRDVQRFHHFEDGKCSCGDFW 603
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S + G N+ VC TLI+MY +C ++ AR VF + E V ++AMI G A
Sbjct: 150 QLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYARRN 209
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EAL+ F +M +KPN +T + +L +C +G +D G ++ + ++ ++
Sbjct: 210 RPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG-KWIHKYAKKHSFCKYVKVN 268
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
++D+ ++ G L +A M K + W A++
Sbjct: 269 TALIDMFAKCGSLDDAVSIFEKMRYK-DTQAWSAMI 303
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 100/253 (39%), Gaps = 46/253 (18%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH 93
AR +F M E + +++M +G + E + F +++E GI P+ TF LL AC
Sbjct: 82 ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141
Query: 94 MGWVDEGRRF------------------FYSMTTEYGII------------PQIEHYGCM 123
++EGR+ +M TE + P + Y M
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAM 201
Query: 124 VDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+ +R EA R M +KPN + ++L C + ++DL + + +
Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSF 261
Query: 181 LNN-GYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
+ L +++A+ +D + + MR K T WS++ V H
Sbjct: 262 CKYVKVNTALIDMFAKCGSLDDAVSIFEKMR---YKDTQAWSAMIV---------AYANH 309
Query: 240 PQAEKIFQMWEKL 252
+AEK M+E++
Sbjct: 310 GKAEKSMLMFERM 322
>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
gi|194690792|gb|ACF79480.1| unknown [Zea mays]
Length = 617
Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 178/351 (50%), Positives = 233/351 (66%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y G + +I++ L+DMY KCG + A VF M ER V+TW++ + GLA++G
Sbjct: 268 VHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGM 327
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
E L F +M GI+PNGV+F+ +L C G VDEGR F SM +YG+ P EHYG
Sbjct: 328 GTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMD-KYGVDPWPEHYG 386
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL RAG L +A FI +MP++P+ VWGALL R+H ++DL + A +L ++
Sbjct: 387 CMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIESE 446
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+ HV LSNIYAE++ W+ V+RVR +M+ GVKK PGWS+I VDG VHEF G HP+
Sbjct: 447 NDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLHPR 506
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I M ++ ++L+GY NT VL DIEE+EKE + HSEKLAL FGL+ P
Sbjct: 507 YNEIELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEKLALAFGLIVLPEDV 566
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC DCH KL+S++ NREIV+RDRNRFH F+ G CSC DYW
Sbjct: 567 EIRIVKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 617
>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 363 bits (933), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 173/345 (50%), Positives = 239/345 (69%), Gaps = 5/345 (1%)
Query: 13 RNIRVCN-----TLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
RNIR N +LIDMYVKCGC+E +F M ++ ++S MI GLA+HG+ EAL
Sbjct: 215 RNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQ 274
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F+ M+E G+KP+ V ++G+L AC H G VDEG + F M E+GI P I+HYGC+V L+
Sbjct: 275 VFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNRMKLEHGIEPTIQHYGCIVHLM 334
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV 187
RAG L +A E IR+MPIKPN VVW LL C+ H N+++ E A++ L +L+ N G +V
Sbjct: 335 GRAGMLNKALEHIRSMPIKPNEVVWRGLLSACKFHHNLEIGEIAAKSLGELNSSNPGDYV 394
Query: 188 VLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQ 247
VLSN+YA A+RWEDVA++R M G +TPG+S + V+ +++FV+ D +HPQ + +++
Sbjct: 395 VLSNMYARAKRWEDVAKIRTEMARKGFTQTPGFSLVQVERKIYKFVSQDMSHPQCKGMYE 454
Query: 248 MWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMK 307
M ++ +K +GY P+TS VL D++E+EK + L HS+KLA+ F L++T G PIRI +
Sbjct: 455 MIHQMEWQLKFEGYSPDTSQVLFDVDEEEKRQRLKAHSQKLAMAFALIHTSQGAPIRIAR 514
Query: 308 NLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
NLR+C DCH KLIS I REI VRDRNRFH F+ G+CSC DYW
Sbjct: 515 NLRMCNDCHTYTKLISVIYQREITVRDRNRFHHFKDGTCSCRDYW 559
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 99/196 (50%), Gaps = 11/196 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y + G ++ V N+LI+MY KCG +E + VF M+ R V +WSA+I A G
Sbjct: 106 QIHGYIFKRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLG 165
Query: 61 QAKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSM---TTEYGIIPQ 116
E L+ F +M G +P + +L AC H+G +D GR ++ E +I Q
Sbjct: 166 MWSECLSVFGEMSREGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQ 225
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH-KNIDLAEEASRQL 175
++D+ + G +++ + M +K N + + ++ G +H + ++ + S L
Sbjct: 226 TS----LIDMYVKCGCIEKGLSLFQRM-VKKNQLSYSVMITGLAMHGRGMEALQVFSDML 280
Query: 176 DQ-LDPLNNGYHVVLS 190
++ L P + Y VLS
Sbjct: 281 EEGLKPDDVVYLGVLS 296
Score = 37.7 bits (86), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 39/72 (54%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88
G ++ A +F ++++ F ++ MI+G + AL + +M+E G++ + T+ L
Sbjct: 33 GSMDYACSIFRQIDQPGTFEFNTMIRGYVNVMNMENALFLYYEMLERGVESDNFTYPALF 92
Query: 89 HACGHMGWVDEG 100
AC + ++EG
Sbjct: 93 KACASLRSIEEG 104
>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 363 bits (933), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 175/355 (49%), Positives = 247/355 (69%), Gaps = 4/355 (1%)
Query: 2 VHEYSNQ-SGFRRNIRVC--NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAI 58
+H YS + F N + L+DMY KCG ++ A +VF M R VFTW+A+I GLA+
Sbjct: 235 LHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAM 294
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
HG ++A++ F++M + P+ VTFI LL AC H G VDEG F +M ++ I P++E
Sbjct: 295 HGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRME 354
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
HYGC+VDLL RA + +A FI NMPIK N V+W LLG CR + DLAE+ R++ +L
Sbjct: 355 HYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIEL 414
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
+P + G +V+LSN+YA +W+ ++RK M+N G++KTPG S I ++G++H+FVAGD +
Sbjct: 415 EPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRS 474
Query: 239 HPQAEKIFQMWEKLLDGMKLK-GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNT 297
H Q E+I+ M E++ + L G++P T+ VL DIEE+EKE L+ HSEKLA+ GL++T
Sbjct: 475 HLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLIST 534
Query: 298 PPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P G+PIRI+KNLRVC DCH+ K+ S++ NREIV RDR+RFH F+ GSCSC D+W
Sbjct: 535 PSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 589
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 92/183 (50%), Gaps = 9/183 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R H ++GF ++ V N LI Y CG A VF E R V TW+ MI G
Sbjct: 132 RFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKG 191
Query: 61 QAKEALTSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE---YGIIPQ 116
+++A ++M ++ ++P+ VT + L+ AC +G ++ G +F +S + E + I
Sbjct: 192 LSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERG-KFLHSYSKELDKFEINCD 250
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLD 176
+ +VD+ ++ G + A + R M ++ N W AL+GG +H + E+A D
Sbjct: 251 LVLETALVDMYAKCGSIDLALQVFRRMRVR-NVFTWNALIGGLAMHGH---GEDAISLFD 306
Query: 177 QLD 179
Q++
Sbjct: 307 QME 309
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 29/167 (17%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88
G L AR++F +M+ F + MI+G A EA++ + M+E G+ + T+ +L
Sbjct: 59 GDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVL 118
Query: 89 HACGHMGWVDEGRRF--------FYSMTTEYGIIPQIEH----YGCMVDLLSRAGFLQEA 136
AC +G V GRRF F S + Q H +GC D+ +
Sbjct: 119 AACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDEST----- 173
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183
+R++ V W ++ H N L+E+A LD++ L+N
Sbjct: 174 ---VRDV------VTWNIMINA---HLNKGLSEKAFDLLDEMTKLDN 208
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 363 bits (933), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 170/335 (50%), Positives = 239/335 (71%), Gaps = 1/335 (0%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
L+DMY KCG ++ A +VF M R VFTW+A+I GLA+HG ++A++ F++M +
Sbjct: 353 TALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLM 412
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ VTFI LL AC H G VDEG F +M ++ I P++EHYGC+VDLL RA + +A
Sbjct: 413 PDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALA 472
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAER 198
FI NMPIK N V+W LLG CR + DLAE+ R++ +L+P + G +V+LSN+YA +
Sbjct: 473 FIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQ 532
Query: 199 WEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKL 258
W+ ++RK M+N G++KTPG S I ++G++H+FVAGD +H Q E+I+ M E++ + L
Sbjct: 533 WDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNL 592
Query: 259 K-GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHA 317
G++P T+ VL DIEE+EKE L+ HSEKLA+ GL++TP G+PIRI+KNLRVC DCH+
Sbjct: 593 DGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHS 652
Query: 318 AFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
K+ S++ NREIV RDR+RFH F+ GSCSC D+W
Sbjct: 653 FLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 687
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 100/178 (56%), Gaps = 5/178 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H YS + G N+RV N ++DMY KC +E A+ VF + E+ V +W++M+ GLA G
Sbjct: 235 LHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGY 294
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL F KM I+ + +T +G+L AC G +D+G ++ + + ++ I +
Sbjct: 295 FQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQG-KYIHLLIDKFEINCDLVLET 353
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
+VD+ ++ G + A + R M ++ N W AL+GG +H + E+A DQ++
Sbjct: 354 ALVDMYAKCGSIDLALQVFRRMRVR-NVFTWNALIGGLAMHGH---GEDAISLFDQME 407
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R H ++GF ++ V N LI Y CG A VF E R V TW+ MI G
Sbjct: 132 RFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKG 191
Query: 61 QAKEALTSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+++A ++M ++ ++P+ VT + L+ AC +G ++ G +F +S + E G+ +
Sbjct: 192 LSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERG-KFLHSYSKELGLDENLRV 250
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ + ++ A E + N + + + W ++L G
Sbjct: 251 NNAILDMYCKCDDIESAQE-VFNRIREKDVLSWTSMLSG 288
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 29/167 (17%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88
G L AR++F +M+ F + MI+G A EA++ + M+E G+ + T+ +L
Sbjct: 59 GDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVL 118
Query: 89 HACGHMGWVDEGRRF--------FYSMTTEYGIIPQIEH----YGCMVDLLSRAGFLQEA 136
AC +G V GRRF F S + Q H +GC D+ +
Sbjct: 119 AACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDEST----- 173
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183
+R++ V W ++ H N L+E+A LD++ L+N
Sbjct: 174 ---VRDV------VTWNIMINA---HLNKGLSEKAFDLLDEMTKLDN 208
>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
Length = 877
Score = 363 bits (933), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 171/352 (48%), Positives = 230/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + F + N L+ Y KCG +E A F + ER V +WSAMI GLA HG
Sbjct: 526 QVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHG 585
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
K AL F +M++ GI PN +T +L AC H G VDE +R+F SM +GI EHY
Sbjct: 586 HGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHY 645
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DLL RAG L +A E + +MP + N +WGALLG RVHK+ +L + A+ +L L+P
Sbjct: 646 SCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEP 705
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+G HV+L+N YA A W +VA+VRKLM++ +KK P S I V VH F+ GD++HP
Sbjct: 706 EKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHP 765
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++I+ +L D M G++PN V L D++ EKE L HSE+LA+ F L++TPPG
Sbjct: 766 MTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPG 825
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLR+C DCH AFK IS+IV+REI++RD NRFH F+ G+CSCGDYW
Sbjct: 826 APIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 7/172 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIH 59
+VH + +GF ++ V N L+ MY G ++ ARRVF E + ER +W+ ++ +
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKN 180
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
Q +A+ F +M+ GI+P F +++AC ++ GR+ ++M G +
Sbjct: 181 DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQ-VHAMVVRMGYDKDVFT 239
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRV----HKNIDL 167
+VD+ + G + A MP + V W AL+ GC + H+ I+L
Sbjct: 240 ANALVDMYMKMGRVDIASVIFEKMP-DSDVVSWNALISGCVLNGHDHRAIEL 290
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 106/231 (45%), Gaps = 10/231 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + GF + V N LID Y KC CL A RVF E + ++MI L+
Sbjct: 425 QVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCD 484
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ A+ F +M+ G++P+ LL+AC + ++G++ ++ + +
Sbjct: 485 HGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQ-VHAHLIKRQFMSDAFAG 543
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV-WGALLGGCRVHKNIDLAEEASRQLDQLD 179
+V ++ G +++A ++P + GVV W A++GG H + A E ++ +D
Sbjct: 544 NALVYTYAKCGSIEDAELAFSSLPER--GVVSWSAMIGGLAQHGHGKRALELFGRM--VD 599
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL----GVKKTPGWSSITVD 226
N H+ ++++ V ++ ++ G+ +T S +D
Sbjct: 600 EGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMID 650
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 2/159 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + G+ +++ N L+DMY+K G ++ A +F +M + V +W+A+I G ++G
Sbjct: 223 QVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNG 282
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A+ +M G+ PN T +L AC G D GR+ M
Sbjct: 283 HDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGV 342
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
G +VD+ ++ FL +A + M + ++ AL+ GC
Sbjct: 343 G-LVDMYAKNHFLDDARKVFDWM-FHRDLILCNALISGC 379
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
L+DMY K L+ AR+VF M R + +A+I G + G+ EAL+ F ++ + G+ N
Sbjct: 344 LVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVN 403
Query: 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
T +L + + R+ +++ + G I ++D + L +A
Sbjct: 404 RTTLAAVLKSTASLEAASTTRQ-VHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDA 458
>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
Length = 877
Score = 363 bits (933), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 171/352 (48%), Positives = 230/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + F + N L+ Y KCG +E A F + ER V +WSAMI GLA HG
Sbjct: 526 QVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHG 585
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
K AL F +M++ GI PN +T +L AC H G VDE +R+F SM +GI EHY
Sbjct: 586 HGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHY 645
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DLL RAG L +A E + +MP + N +WGALLG RVHK+ +L + A+ +L L+P
Sbjct: 646 SCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEP 705
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+G HV+L+N YA A W +VA+VRKLM++ +KK P S I V VH F+ GD++HP
Sbjct: 706 EKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHP 765
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++I+ +L D M G++PN V L D++ EKE L HSE+LA+ F L++TPPG
Sbjct: 766 MTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPG 825
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLR+C DCH AFK IS+IV+REI++RD NRFH F+ G+CSCGDYW
Sbjct: 826 APIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 7/172 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIH 59
+VH + +GF ++ V N L+ MY G ++ ARRVF E + ER +W+ ++ +
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKN 180
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
Q +A+ F +M+ GI+P F +++AC ++ GR+ ++M G +
Sbjct: 181 DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQ-VHAMVVRMGYDKDVFT 239
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRV----HKNIDL 167
+VD+ + G + A MP + V W AL+ GC + H+ I+L
Sbjct: 240 ANALVDMYMKMGRVDIASVIFEKMP-DSDVVSWNALISGCVLNGHDHRAIEL 290
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 106/231 (45%), Gaps = 10/231 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + GF + V N LID Y KC CL A RVF E + ++MI L+
Sbjct: 425 QVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCD 484
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ A+ F +M+ G++P+ LL+AC + ++G++ ++ + +
Sbjct: 485 HGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQ-VHAHLIKRQFMSDAFAG 543
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV-WGALLGGCRVHKNIDLAEEASRQLDQLD 179
+V ++ G +++A ++P + GVV W A++GG H + A E ++ +D
Sbjct: 544 NALVYTYAKCGSIEDAELAFSSLPER--GVVSWSAMIGGLAQHGHGKRALELFGRM--VD 599
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL----GVKKTPGWSSITVD 226
N H+ ++++ V ++ ++ G+ +T S +D
Sbjct: 600 EGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMID 650
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 2/159 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + G+ +++ N L+DMY+K G ++ A +F +M + V +W+A+I G ++G
Sbjct: 223 QVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNG 282
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A+ +M G+ PN T +L AC G D GR+ M
Sbjct: 283 HDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGV 342
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
G +VD+ ++ FL +A + M + ++ AL+ GC
Sbjct: 343 G-LVDMYAKNHFLDDARKVFDWM-FHRDLILCNALISGC 379
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
L+DMY K L+ AR+VF M R + +A+I G + G+ EAL+ F ++ + G+ N
Sbjct: 344 LVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVN 403
Query: 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
T +L + + R+ +++ + G I ++D + L +A
Sbjct: 404 RTTLAAVLKSTASLEAASTTRQ-VHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDA 458
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 10/159 (6%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +SG + R N LI Y KC ARRVF E+ + +WS+++ + +G
Sbjct: 26 LHASLLKSGSLASFR--NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGL 83
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR--RFFYSMTTEYGIIPQIEH 119
+ A+ +F+ M G+ N +L V + R ++M G +
Sbjct: 84 PRSAIQAFHGMRAEGVCCNEFALPVVLKC------VPDARLGAQVHAMAMATGFGSDVFV 137
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V + GF+ +A + N V W L+
Sbjct: 138 ANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSA 176
>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 972
Score = 363 bits (932), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 171/351 (48%), Positives = 235/351 (66%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H++ + G + N+LIDMY +CG ++ +RR+F M +R + +W+ MI +HG
Sbjct: 622 IHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGF 681
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+A+ F + +G+KPN +TF LL AC H G ++EG ++F M TEY + P +E Y
Sbjct: 682 GMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYA 741
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLLSRAG E EFI MP +PN VWG+LLG CR+H N DLAE A+R L +L+P
Sbjct: 742 CMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQ 801
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +V+++NIY+ A RWED A++R LM+ GV K PG S I V +H FV GD +HP
Sbjct: 802 SSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPL 861
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E+I E L +K GY+P+T+ VL D++E EKE L HSEK+AL FGL++T GT
Sbjct: 862 MEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGT 921
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P+RI+KNLRVC DCH+A K IS++ R+I++RD RFH F G CSCGDYW
Sbjct: 922 PLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 972
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V++Y GF N V +++DM++KCG ++ ARR F E+E + VF W+ M+ G G+
Sbjct: 212 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGE 271
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K+AL + M G+KP+ VT+ ++ G +E ++F M P + +
Sbjct: 272 FKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWT 331
Query: 122 CMVDLLSRAGFLQEAYEFIRNM---PIKPNGVVWGALLGGC 159
++ + G+ EA R M +KPN + + + C
Sbjct: 332 ALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSAC 372
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 63/291 (21%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
L+++Y + GC+E ARR+F +M ER VF+W+A+++ G +E + F M+ G++P+
Sbjct: 130 LLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPD 189
Query: 81 GVTFIGLLHACGHM-----------------------------------GWVDEGRRFFY 105
F + AC + G +D RRFF
Sbjct: 190 HFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFE 249
Query: 106 SMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGCRVH 162
+ + + MV + G ++A + I +M +KP+ V W A++ G +
Sbjct: 250 EIE-----FKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISG---Y 301
Query: 163 KNIDLAEEASRQLDQLDPLNNGYHVVLS--NIYAEAER----WEDVARVRKLMRNLGVKK 216
EEAS+ ++ L + V+S + A +E+ +E ++ RK++ GVK
Sbjct: 302 AQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLE-GVKP 360
Query: 217 TPGWSSITVDGVVHEFVA------GDETHPQAEKIFQMWEKLLDGMKLKGY 261
+SIT+ V G E H K+ ++ LL G L Y
Sbjct: 361 ----NSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDY 407
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 33/191 (17%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y ++ + V + LI MY C LE A VF E+ R V W+++I A G+
Sbjct: 521 IHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGR 580
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRR---------------FFYS 106
+ AL +M ++ N VT + L AC + + +G+ S
Sbjct: 581 SVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNS 640
Query: 107 MTTEYG-------------IIPQ--IEHYGCMVDLLSRAGFLQEA---YEFIRNMPIKPN 148
+ YG ++PQ + + M+ + GF +A ++ R M +KPN
Sbjct: 641 LIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPN 700
Query: 149 GVVWGALLGGC 159
+ + LL C
Sbjct: 701 HITFTNLLSAC 711
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 39/189 (20%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-----ERTVFTWSAMIQGLAIHGQAK 63
SG + + N +I Y + G E A + F+EM + V +W+A+I G +G
Sbjct: 285 SGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDF 344
Query: 64 EALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTE------------ 110
EAL+ F KM+ G+KPN +T + AC ++ + GR Y + E
Sbjct: 345 EALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSL 404
Query: 111 ----------------YGIIPQIE--HYGCMVDLLSRAGFLQEAYEFIRNMP---IKPNG 149
+G+I Q + + M+ + G +EA E + M I+P+
Sbjct: 405 VDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDI 464
Query: 150 VVWGALLGG 158
+ W L+ G
Sbjct: 465 ITWNGLVTG 473
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ V N+L+D Y KC +E ARR F +++ + +W+AM+ G A+ G +EA+ ++M
Sbjct: 397 DLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMK 456
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM 107
GI+P+ +T+ GL+ G FF M
Sbjct: 457 FQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRM 490
>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Cucumis sativus]
Length = 782
Score = 363 bits (932), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 165/353 (46%), Positives = 244/353 (69%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF-IEMEERTVFTWSAMIQGLAIH 59
++H + ++G V N LI MY K G + A+RVF + ++ + +W++MI LA H
Sbjct: 430 QIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQH 489
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G KEA+ F +M+ +G+KP+ +T++G+L AC H+G V++GR+++ MT + I P + H
Sbjct: 490 GLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSH 549
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CM+DL RAG LQEAY FI +MPI+P+ + WG+LL C++HKN DLA+ A+ +L +D
Sbjct: 550 YACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLID 609
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N+G ++ L+N+Y+ +WE+ A+ RKLM++ GV+K G S I + VH F D H
Sbjct: 610 PGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIH 669
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
PQ ++I+++ ++ + +K G+IP+T VL D+EE+ KE+ L HSEKLA+ FGL+NTP
Sbjct: 670 PQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPE 729
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T +RIMKNLRVC DCH+A K IS++V REI+VRD RFH F+ GSCSC DYW
Sbjct: 730 NTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 97/207 (46%), Gaps = 14/207 (6%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+NI N LI +Y++ G E A F +M +R + +W++MI G + G EAL F+KM
Sbjct: 206 KNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKM 265
Query: 73 I-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG----CMVDLL 127
+ E +KP+ T +L AC ++ ++ G++ Y + + E G ++ +
Sbjct: 266 LNEPSLKPDNFTLASILSACANLEKLNIGKQIH-----AYILRAETETSGAVGNALISMY 320
Query: 128 SRAGFLQEAYEFIR-NMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYH 186
+++G ++ A + N N + + +LL G N+ A E +L D +
Sbjct: 321 AKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAM 380
Query: 187 VVLSNIYAEAERWEDVARVRKLMRNLG 213
+V Y + W D + +LM N G
Sbjct: 381 IVG---YVQNGLWNDALELFRLMVNEG 404
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
NI +L+D Y K G ++ AR +F ++ +R V W+AMI G +G +AL F M+
Sbjct: 342 NIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMV 401
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYS 106
G +PN T +L + ++ G++ S
Sbjct: 402 NEGPEPNSYTLAAMLSVSSSLTILEHGKQIHAS 434
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 4/197 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NTLI Y K G E +RR+ EM + +W+A+I G G A+ F KMI +
Sbjct: 80 NTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVP 139
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ T +L +C +D GR+ +S + G+ + ++++ ++ G A
Sbjct: 140 PSQFTVSNVLSSCAANQTLDIGRK-IHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKV 198
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAER 198
M +K N W AL+ +LA ++ D ++ ++ ++S +
Sbjct: 199 VFDRMTVK-NISTWNALISLYMQSGQFELAASQFEKMPDRDIVS--WNSMISGYSQQGYN 255
Query: 199 WEDVARVRKLMRNLGVK 215
E +A K++ +K
Sbjct: 256 LEALAIFSKMLNEPSLK 272
>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 643
Score = 363 bits (932), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 173/352 (49%), Positives = 236/352 (67%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y ++ F NI + ++LIDMY KCG ++ ARRVF ++ + +W+AMI G A+HG
Sbjct: 292 QLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHG 351
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA F +M +KPN +TF+ +L AC H G VD G ++F SM+ +YG +P +EH
Sbjct: 352 PTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHC 411
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+ D L RAG L EAY FI M IKP VW LL CRVHKN LAEE ++++ +L+P
Sbjct: 412 AALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEP 471
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ G HV+LSN+Y+ + RW + A++RK MR G+KK P S I V +H F+A D++HP
Sbjct: 472 KSMGSHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHP 531
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++I + M +GY+PN VL DIEE++K + L HSEKLA+ FG+++TPPG
Sbjct: 532 WYDRIIDALNVYSEQMIRQGYVPNMEDVLQDIEEEQKREVLCGHSEKLAIVFGIISTPPG 591
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IR+MKNLRVC DCH A K IS+IV REIVVRD NRFH F+ G+CSCGD+W
Sbjct: 592 TTIRVMKNLRVCVDCHIATKFISKIVAREIVVRDVNRFHRFKDGNCSCGDFW 643
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 84/162 (51%), Gaps = 4/162 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y+ ++GF ++ V ++LIDMY C ++ + +VF + W++M+ G A +G
Sbjct: 192 VHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGS 251
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHY 120
+EAL F +M++ G++P VTF L+ A G++ + G++ Y + + I
Sbjct: 252 VEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFN--DNIFIS 309
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ + G + A + P+ V W A++ G +H
Sbjct: 310 SSLIDMYCKCGNVDIARRVFNGIQ-SPDIVSWTAMIMGYALH 350
Score = 40.8 bits (94), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 26 VKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFI 85
++ E R+VF EM ER +W+ +I G A H + +EAL+ +M G P+ T
Sbjct: 115 LESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLS 174
Query: 86 GLL 88
+L
Sbjct: 175 TVL 177
>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g08820
gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 685
Score = 363 bits (932), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 171/342 (50%), Positives = 230/342 (67%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
F N+ + N LIDMY KCG + VF EM+E+ + +A I GLA +G K + F
Sbjct: 344 FLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFG 403
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
+ ++GI P+G TF+GLL C H G + +G RFF +++ Y + +EHYGCMVDL RA
Sbjct: 404 QTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRA 463
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190
G L +AY I +MP++PN +VWGALL GCR+ K+ LAE ++L L+P N G +V LS
Sbjct: 464 GMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLS 523
Query: 191 NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWE 250
NIY+ RW++ A VR +M G+KK PG+S I ++G VHEF+A D++HP ++KI+ E
Sbjct: 524 NIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLE 583
Query: 251 KLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLR 310
L + M+L G++P T V D+EE+EKE+ L HSEKLA+ GL++T G IR++KNLR
Sbjct: 584 DLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLR 643
Query: 311 VCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
VC DCH KLIS+I REIVVRD NRFHCF GSCSC DYW
Sbjct: 644 VCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 92/175 (52%), Gaps = 2/175 (1%)
Query: 4 EYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAK 63
+Y + ++N V TL+++Y KCG +E AR VF M E+ + TWS MIQG A + K
Sbjct: 236 KYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPK 295
Query: 64 EALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCM 123
E + F +M++ +KP+ + +G L +C +G +D G + S+ + + + +
Sbjct: 296 EGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLG-EWGISLIDRHEFLTNLFMANAL 354
Query: 124 VDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+D+ ++ G + +E + M K + V+ A + G + ++ L+ Q ++L
Sbjct: 355 IDMYAKCGAMARGFEVFKEMKEK-DIVIMNAAISGLAKNGHVKLSFAVFGQTEKL 408
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 84/160 (52%), Gaps = 8/160 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + GF ++ +L+ +Y G L A ++F E+ +R+V TW+A+ G G+
Sbjct: 133 LHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGR 192
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR---RFFYSMTTEYGIIPQIE 118
+EA+ F KM+E+G+KP+ + +L AC H+G +D G ++ M + +
Sbjct: 193 HREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTT 252
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V+L ++ G +++A +M ++ + V W ++ G
Sbjct: 253 ----LVNLYAKCGKMEKARSVFDSM-VEKDIVTWSTMIQG 287
>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 900
Score = 363 bits (932), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 171/351 (48%), Positives = 235/351 (66%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H YS + +++ V LIDMY KCG + AR +F +R V TW+AMI G HG
Sbjct: 551 IHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGS 610
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K A+ F +M G PN TF+ +L AC H G VDEG+ +F SM +YG+ P +EHYG
Sbjct: 611 GKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYG 670
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
MVDLL RAG L EA+ FI+ MP++P V+GA+LG C++HKN++LAEE+++++ +L+P
Sbjct: 671 TMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPE 730
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
YHV+L+NIYA A W+DVARVR M G++KTPGWS + + +H F +G H Q
Sbjct: 731 EGVYHVLLANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQ 790
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A+ I+ KL++ +K GY+P+T + D+E+ K + L HSEKLA+ +GL+ T PGT
Sbjct: 791 AKDIYARLAKLIEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGT 849
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I+I KNLRVC+DCH A KLIS + REI++RD RFH F+ G CSCGDYW
Sbjct: 850 TIQIKKNLRVCKDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 900
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 98/184 (53%), Gaps = 10/184 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++ + GF + V ++D+Y KCG ++ AR+VF M++R +W+AMI+G A +G
Sbjct: 349 VHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGD 408
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A EAL F +M+ G+ V+ + LHACG +G++DEGRR + + G+ +
Sbjct: 409 ATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRR-VHELLVRIGLESNVNVMN 467
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR-----QLD 176
++ + + A + + K V W A++ GC + + +E+A R QL+
Sbjct: 468 ALITMYCKCKRTDLAAQVFDELGYKTR-VSWNAMILGCTQNGS---SEDAVRLFSRMQLE 523
Query: 177 QLDP 180
+ P
Sbjct: 524 NVKP 527
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 2/170 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVHE + G N+ V N LI MY KC + A +VF E+ +T +W+AMI G +G
Sbjct: 449 RVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNG 508
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+++A+ F++M +KP+ T + ++ A + + R+ + + + +
Sbjct: 509 SSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQA-RWIHGYSIRLHLDQDVYVL 567
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
++D+ ++ G + A N + + W A++ G H + +A E
Sbjct: 568 TALIDMYAKCGRVSIARSLF-NSARDRHVITWNAMIHGYGSHGSGKVAVE 616
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 3/158 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH G L +MY KC ARRVF M R W+A++ G A +G
Sbjct: 247 VHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGL 306
Query: 62 AKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A+ A+ +M E G +P+ VT + +L AC + R ++ G Q+
Sbjct: 307 AEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACRE-VHAFAVRGGFDEQVNVS 365
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ + G + A + M + N V W A++ G
Sbjct: 366 TAILDVYCKCGAVDSARKVFDGMQDR-NSVSWNAMIKG 402
>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 363 bits (932), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 169/352 (48%), Positives = 241/352 (68%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+HEY+ + GF + ++V LIDM+ KCG L+ A +F M + WSAMI A HGQ
Sbjct: 254 IHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQ 313
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+ ++ F +M ++P+ +TF+GLL+AC H G V+EGR +F M E+GI+P I+HYG
Sbjct: 314 AENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYG 373
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
MVDLL RAG L++AYEFI +PI P ++W LL C H N++LAE+ S ++ +LD
Sbjct: 374 SMVDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERILELDDS 433
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G +V+LSN+YA ++WE V +RK+M++ K PG SSI V+ VVHEF +GD
Sbjct: 434 HGGDYVILSNLYARNKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSA 493
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVL-LDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
K+ + ++++ +KL GY+P+TS+V+ D+ ++EKE L HSEKLA+ FGL+NTPPG
Sbjct: 494 TTKLHRALDEMVKELKLAGYVPDTSMVVHADMGDQEKEITLRYHSEKLAIAFGLLNTPPG 553
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IR++KNLRVC DCH+A KLIS I R++V+RD RFH F+ G CSC D+W
Sbjct: 554 TTIRVVKNLRVCRDCHSAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCRDFW 605
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 84/156 (53%), Gaps = 2/156 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S + G N+ VC TLI+MY +C ++ AR VF + E V ++AMI G A
Sbjct: 152 QLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRN 211
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EAL+ F +M +KPN +T + +L +C +G +D G ++ + ++G ++
Sbjct: 212 RPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLG-KWIHEYAKKHGFCKYVKVN 270
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
++D+ ++ G L +A NM K + W A++
Sbjct: 271 TALIDMFAKCGSLDDAVSIFENMRYK-DTQAWSAMI 305
>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
Length = 694
Score = 363 bits (932), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 169/347 (48%), Positives = 246/347 (70%), Gaps = 13/347 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMI-------- 53
VH Y ++ ++ + N ++DMY KCG +E A+R+F +M E+ + +W+ M+
Sbjct: 259 VHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGE 318
Query: 54 ----QGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTT 109
QGLA+HG K+A+ F+KM E +KPN VTF +L AC H+G V+EGR FF M
Sbjct: 319 YDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMEL 378
Query: 110 EYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAE 169
YG++P ++HY CMVD+L RAG L+EA E I MP+ P VWGALLG C +H+N+ LAE
Sbjct: 379 VYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAE 438
Query: 170 EASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVV 229
+A QL +L+P N+G +V+LSNIYA+A +W+ V+ +RKLMR++G+KK PG SSI VDG+V
Sbjct: 439 QACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIV 498
Query: 230 HEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKE-KEKFLYRHSEKL 288
HEF+ GD +HP A+KI+ ++++ ++ GY+PN S +L +EE++ KE+ L+ HSEKL
Sbjct: 499 HEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKL 558
Query: 289 ALTFGLMNTPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDR 335
A+ FGL++T PIRI+KNLRVC DCH+ KL+S++ +REI++RDR
Sbjct: 559 AIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDR 605
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 2/145 (1%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ + N+LI Y KCG L RVF+ R V +W++MI G +EAL F +M
Sbjct: 170 DVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEME 229
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
+KPNG+T +G+L AC + G R+ +S I + M+D+ ++ G +
Sbjct: 230 TQNVKPNGITMVGVLSACAKKSDFEFG-RWVHSYIERNRIXESLTLSNAMLDMYTKCGSV 288
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGG 158
++A MP K + V W +L G
Sbjct: 289 EDAKRLFDKMPEK-DIVSWTTMLVG 312
>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Cucumis sativus]
Length = 782
Score = 363 bits (932), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 165/353 (46%), Positives = 244/353 (69%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF-IEMEERTVFTWSAMIQGLAIH 59
++H + ++G V N LI MY K G + A+RVF + ++ + +W++MI LA H
Sbjct: 430 QIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQH 489
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G KEA+ F +M+ +G+KP+ +T++G+L AC H+G V++GR+++ MT + I P + H
Sbjct: 490 GLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSH 549
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CM+DL RAG LQEAY FI +MPI+P+ + WG+LL C++HKN DLA+ A+ +L +D
Sbjct: 550 YACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLID 609
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N+G ++ L+N+Y+ +WE+ A+ RKLM++ GV+K G S I + VH F D H
Sbjct: 610 PGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIH 669
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
PQ ++I+++ ++ + +K G+IP+T VL D+EE+ KE+ L HSEKLA+ FGL+NTP
Sbjct: 670 PQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPE 729
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T +RIMKNLRVC DCH+A K IS++V REI+VRD RFH F+ GSCSC DYW
Sbjct: 730 NTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 97/207 (46%), Gaps = 14/207 (6%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+NI N LI +Y++ G E A F +M +R + +W++MI G + G EAL F+KM
Sbjct: 206 KNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKM 265
Query: 73 I-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG----CMVDLL 127
+ E +KP+ T +L AC ++ ++ G++ Y + + E G ++ +
Sbjct: 266 LNEPSLKPDNFTLASILSACANLEKLNIGKQIH-----AYILRAETETSGAVGNALISMY 320
Query: 128 SRAGFLQEAYEFIR-NMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYH 186
+++G ++ A + N N + + +LL G N+ A E +L D +
Sbjct: 321 AKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAM 380
Query: 187 VVLSNIYAEAERWEDVARVRKLMRNLG 213
+V Y + W D + +LM N G
Sbjct: 381 IVG---YVQNGLWNDALELFRLMVNEG 404
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
NI +L+D Y K G ++ AR +F ++ +R V W+AMI G +G +AL F M+
Sbjct: 342 NIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMV 401
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYS 106
G +PN T +L + ++ G++ S
Sbjct: 402 NEGPEPNSYTLAAMLSVSSSLTILEHGKQIHAS 434
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 2/139 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NTLI Y K G E +RR+ EM + +W+A+I G G A+ F KMI +
Sbjct: 80 NTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVP 139
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ T +L +C +D GR+ +S + G+ + ++++ ++ G A
Sbjct: 140 PSQFTVSNVLSSCAANQTLDIGRK-IHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKV 198
Query: 139 FIRNMPIKPNGVVWGALLG 157
M +K N W AL+
Sbjct: 199 VFDRMTVK-NISTWNALIS 216
>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
Length = 1822
Score = 363 bits (931), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 178/351 (50%), Positives = 233/351 (66%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y G + +I++ L+DMY KCG + A VF M ER V+TW++ + GLA++G
Sbjct: 1473 VHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGM 1532
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
E L F +M GI+PNGV+F+ +L C G VDEGR F SM +YG+ P EHYG
Sbjct: 1533 GTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMD-KYGVDPWPEHYG 1591
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL RAG L +A FI +MP++P+ VWGALL R+H ++DL + A +L ++
Sbjct: 1592 CMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIESE 1651
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+ HV LSNIYAE++ W+ V+RVR +M+ GVKK PGWS+I VDG VHEF G HP+
Sbjct: 1652 NDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLHPR 1711
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I M ++ ++L+GY NT VL DIEE+EKE + HSEKLAL FGL+ P
Sbjct: 1712 YNEIELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEKLALAFGLIVLPEDV 1771
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC DCH KL+S++ NREIV+RDRNRFH F+ G CSC DYW
Sbjct: 1772 EIRIVKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 1822
>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 363 bits (931), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 171/351 (48%), Positives = 235/351 (66%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H++ + G + N+LIDMY +CG ++ +RR+F M +R + +W+ MI +HG
Sbjct: 379 IHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGF 438
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+A+ F + +G+KPN +TF LL AC H G ++EG ++F M TEY + P +E Y
Sbjct: 439 GMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYA 498
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLLSRAG E EFI MP +PN VWG+LLG CR+H N DLAE A+R L +L+P
Sbjct: 499 CMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQ 558
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +V+++NIY+ A RWED A++R LM+ GV K PG S I V +H FV GD +HP
Sbjct: 559 SSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPL 618
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E+I E L +K GY+P+T+ VL D++E EKE L HSEK+AL FGL++T GT
Sbjct: 619 MEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGT 678
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P+RI+KNLRVC DCH+A K IS++ R+I++RD RFH F G CSCGDYW
Sbjct: 679 PLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 729
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 60/100 (60%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V++Y GF N V +++DM++KCG ++ ARR F E+E + VF W+ M+ G G+
Sbjct: 133 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGE 192
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR 101
K+AL F KM+ G+KPN +T + AC ++ + GR
Sbjct: 193 FKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGR 232
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
L+++Y + GC+E ARR+F +M ER VF+W+A+++ G +E + F M+ G++P+
Sbjct: 51 LLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPD 110
Query: 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFI 140
F + AC + G+ + M + G G ++D+ + G + A F
Sbjct: 111 HFVFPKVFKACSELKNYRVGKDVYDYMLS-IGFEGNSCVKGSILDMFIKCGRMDIARRFF 169
Query: 141 RNMPIKPNGVVWGALLGG 158
+ K + +W ++ G
Sbjct: 170 EEIEFK-DVFMWNIMVSG 186
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 79/222 (35%), Gaps = 76/222 (34%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARR------------------------------------- 36
++ V N+L+D Y KC +E ARR
Sbjct: 247 DLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQR 306
Query: 37 ------VFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90
VF E+ R V W+++I A G++ AL +M ++ N VT + L A
Sbjct: 307 MHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPA 366
Query: 91 CGHMGWVDEGRR---------------FFYSMTTEYG-------------IIPQ--IEHY 120
C + + +G+ S+ YG ++PQ + +
Sbjct: 367 CSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSW 426
Query: 121 GCMVDLLSRAGFLQEA---YEFIRNMPIKPNGVVWGALLGGC 159
M+ + GF +A ++ R M +KPN + + LL C
Sbjct: 427 NVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSAC 468
>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 742
Score = 363 bits (931), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 174/351 (49%), Positives = 234/351 (66%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Q +I + L+DMY+KCG +E A VF M R V TWSAMI GLA +G
Sbjct: 392 LHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGM 451
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K AL F M G +PN VT+I +L AC H +DEGR +F M + I P IEHYG
Sbjct: 452 GKAALEYFFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYG 511
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CM+DLL R+G L EA + +R MP++PN V+W ++L CRVHK+ +LA A+ L +L+P
Sbjct: 512 CMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASILSACRVHKDANLARNAAEHLLKLEPD 571
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ +V L NIY ++ +WED +++R+LM GVKK G+SSITV G VH+F+ D THPQ
Sbjct: 572 EDAVYVQLYNIYIDSRQWEDASQIRRLMEERGVKKAAGYSSITVAGQVHKFIVCDRTHPQ 631
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I M E++ +K GY P TS + +D++E+EKE L HSEK+A+ FGL++ P
Sbjct: 632 IMEITAMMEEITRRLKSVGYSPITSQITVDVDEEEKEHALLAHSEKIAIAFGLISLAPNL 691
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P+ I+KNLRVCEDCH+A KLIS I NREI+VRDR+RFH F+ G+CSC D+W
Sbjct: 692 PLHIIKNLRVCEDCHSAIKLISRIWNREIIVRDRSRFHHFRDGTCSCNDFW 742
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 1/161 (0%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
T+I K G L+ A + R V +W+ +I G + G+A EA+ FN M+ GI+
Sbjct: 175 TTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIE 234
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ VT IGLL AC + + GR + + E G++ + ++D+ ++ G + A+E
Sbjct: 235 PDEVTVIGLLSACAQLKDLVFGRS-LHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWE 293
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
+ W A++ G ++D+A Q++ D
Sbjct: 294 VFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRD 334
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 81/158 (51%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R E + G R + N +ID Y K G ++ AR +F +ME+R + T++++I G G
Sbjct: 290 RAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGG 349
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +EAL F +M ++ + T + LL AC +G + +GR ++ + + I
Sbjct: 350 RLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRA-LHACIEQRLVEVDIYLG 408
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ + G ++EA + M ++ + W A++ G
Sbjct: 409 TALLDMYLKCGRVEEASLVFQAMSVR-DVHTWSAMIAG 445
>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 921
Score = 363 bits (931), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 168/352 (47%), Positives = 235/352 (66%), Gaps = 1/352 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G + V N L+ MY KCGC + + +VF MEER +FTW+ I G A HG
Sbjct: 571 QIHTVAIKHGMDSELIVANALMSMYFKCGCAD-SHKVFDSMEERDIFTWNTFITGCAQHG 629
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ + M +G+ PN VTF+GLL+AC H G VDEG +FF SM+ +YG+ P +EHY
Sbjct: 630 LGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHY 689
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL R G +Q A +FI +MPI+P+ V+W ALLG C++HKN ++ A+ +L +P
Sbjct: 690 ACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEP 749
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +V+LSNIY+ W +VA +RK+M+ GV K PG S + + VH FV GD+ H
Sbjct: 750 SNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHE 809
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ E+I + L ++ GY+P+T VL DI+E++KE L HSEKLA+ +GL+ TP G
Sbjct: 810 KIEEIDYTLQDLYTLLRGTGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKG 869
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PI+IMKNLR+C DCH K +S + R+I +RD NRFH F+ GSCSCGD+W
Sbjct: 870 MPIQIMKNLRICGDCHTFIKFVSHVTKRDIDIRDGNRFHHFRNGSCSCGDFW 921
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 90/193 (46%), Gaps = 9/193 (4%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N +I Y++ G ++ A+ +F M R +W+ MI G A +G+++EAL + G+
Sbjct: 356 NAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGML 415
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC--MVDLLSRAGFLQEA 136
P+ + AC H+G ++ GR+ +S+ + G Q Y C ++ + + ++
Sbjct: 416 PSLSSLTSSFLACSHIGALETGRQ-VHSLAVKAGC--QFNSYVCNALISMYGKCRNMEYV 472
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
+ M +K + V W + + V N + E+A D + + + + YA+A
Sbjct: 473 RQVFNRMRVK-DTVSWNSFIAAL-VQNN--MLEDARHIFDNMLSRDVVSWTTIISAYAQA 528
Query: 197 ERWEDVARVRKLM 209
ER ++ K M
Sbjct: 529 ERGDEAVEFFKTM 541
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 87/212 (41%), Gaps = 37/212 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKC-------------------------------G 29
+VH + ++G + N VCN LI MY KC
Sbjct: 439 QVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNN 498
Query: 30 CLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH 89
LE AR +F M R V +W+ +I A + EA+ F M+ KPN LL
Sbjct: 499 MLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLS 558
Query: 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNG 149
CG +G G++ +++ ++G+ ++ ++ + + G ++++ +M + +
Sbjct: 559 VCGGLGSAKLGQQ-IHTVAIKHGMDSELIVANALMSMYFKCG-CADSHKVFDSME-ERDI 615
Query: 150 VVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
W + GC H L EA + + ++ +
Sbjct: 616 FTWNTFITGCAQHG---LGREAIKMYEHMESV 644
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN N ++ YV+ G + ARR+F M R V +W++M+ G Q +A F +M
Sbjct: 124 RNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQM 183
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
N+R L+ Y + G + ARRVF M ER W+AM+ +G A F+ M
Sbjct: 94 NVRTATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAM 152
>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 647
Score = 363 bits (931), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 174/336 (51%), Positives = 234/336 (69%), Gaps = 1/336 (0%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V NTL+ MY K G + A +VF ++ + V + ++M+ G A HG KEA F++MI G
Sbjct: 313 VGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFG 372
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
I+PN +TF+ +L AC H +DEG+ +F + +Y I P++ HY +VDLL RAG L +A
Sbjct: 373 IEPNDITFLSVLTACSHARLLDEGKHYF-GLMRKYNIEPKVSHYATIVDLLGRAGLLDQA 431
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
FI MPI+P +WGALLG ++HKN ++ A++++ +LDP G H +L+NIYA A
Sbjct: 432 KSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASA 491
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGM 256
RWEDVA+VRK+M++ GVKK P S + V+ VH FVA D HPQ EKI +MWEKL +
Sbjct: 492 GRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEKLNQKI 551
Query: 257 KLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCH 316
K GY+P+TS VLL ++++EKE L HSEKLAL+F L+NTPPG+ IRIMKN+RVC DCH
Sbjct: 552 KEIGYVPDTSHVLLFVDQQEKELNLQYHSEKLALSFALLNTPPGSTIRIMKNIRVCGDCH 611
Query: 317 AAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+A K +S +V REI+VRD NRFH F G CSCGDYW
Sbjct: 612 SAIKYVSLVVKREIIVRDTNRFHHFCDGFCSCGDYW 647
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + S F+ ++ + N+L+ MY +CG LEGARR+F EM R + +W++MI G A + +
Sbjct: 96 VHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDR 155
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A +AL F +M+ G +PN T L+ CG+M + GR+ ++ +YG +
Sbjct: 156 ASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQ-IHACCWKYGCHSNVFVGS 214
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ +R G+L EA + K N V W AL+ G
Sbjct: 215 SLVDMYARCGYLGEAMLVFDKLGCK-NEVSWNALIAG 250
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 98/179 (54%), Gaps = 7/179 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G N+ V ++L+DMY +CG L A VF ++ + +W+A+I G A G
Sbjct: 196 QIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKG 255
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEH 119
+ +EAL F +M G +P T+ LL +C MG +++G+ + M + ++ + +
Sbjct: 256 EGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGN 315
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++ + +++G +++A E + + +K + V ++L G H L +EA++Q D++
Sbjct: 316 --TLLHMYAKSGSIRDA-EKVFDKLVKVDVVSCNSMLIGYAQH---GLGKEAAQQFDEM 368
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 363 bits (931), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 175/352 (49%), Positives = 236/352 (67%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + N + +L+DMY KCG L A VF +E + V+ WSAMI LA++GQ
Sbjct: 429 IHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQ 488
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K AL F+ M+E IKPN VTF +L AC H G V+EG + F M YGI+PQI+HY
Sbjct: 489 GKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYV 548
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VD+ RAG L++A FI MPI P VWGALLG C H N++LAE A + L +L+P
Sbjct: 549 CVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPC 608
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G V+LSNIYA+A WE V+ +RKLMR+ VKK P SSI V+G+VHEF+ GD +HP
Sbjct: 609 NHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPF 668
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVL-LDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++KI+ +++ + K GY P+ S +L L E+ E+ L HSEKLA+ FGL++T
Sbjct: 669 SQKIYSKLDEISEKFKPIGYKPDMSNLLQLSEEDNLMEQSLNVHSEKLAIAFGLISTASS 728
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KN+R+C DCHA KL+S++ +R+I++RDR RFH F+ G CSC DYW
Sbjct: 729 QPIRIVKNIRICGDCHAFAKLVSQLYDRDILLRDRYRFHHFRGGKCSCLDYW 780
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 2/151 (1%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
++ ++ + N+LI+ Y G + A RVF M + V +W+AMI A+ G +AL
Sbjct: 201 KASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALL 260
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F +M +KPN +T + +L AC ++ G R+ S G + M+D+
Sbjct: 261 LFQEMEMKDVKPNVITMVSVLSACAKKIDLEFG-RWICSYIENNGFTEHLILNNAMLDMY 319
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ G + +A + M K + V W +L G
Sbjct: 320 VKCGCINDAKDLFNKMSEK-DIVSWTTMLDG 349
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 34/187 (18%)
Query: 4 EYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAK 63
Y +GF ++ + N ++DMYVKCGC+ A+ +F +M E+ + +W+ M+ G A G
Sbjct: 298 SYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYD 357
Query: 64 EALTSFNKM--------------------------------IEIGIKPNGVTFIGLLHAC 91
EA F+ M + KP+ VT I L A
Sbjct: 358 EAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCAS 417
Query: 92 GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV 151
+G +D G + + ++ I ++D+ ++ G L +A E + K + V
Sbjct: 418 AQLGAIDFG-HWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERK-DVYV 475
Query: 152 WGALLGG 158
W A++G
Sbjct: 476 WSAMIGA 482
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 20/159 (12%)
Query: 13 RNIRVCNT-----LIDMYV--KCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEA 65
R R C+ L+ Y C CL A+ VF ++ + ++ W+ +I+G A ++
Sbjct: 97 RTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPTQS 156
Query: 66 LTSFNKMIEIGIK-PNGVTFIGLLHACG-----HMGWVDEGRRFFYSMTTEYGIIPQIEH 119
F M+ + PN TF L A H+G V G S++++ I+
Sbjct: 157 FLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFIL----- 211
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+++ +G A+ NMP K + V W A++
Sbjct: 212 -NSLINFYGSSGAPDLAHRVFTNMPGK-DVVSWNAMINA 248
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 363 bits (931), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 171/352 (48%), Positives = 246/352 (69%), Gaps = 6/352 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+ +N S R +LIDMY KCG +E A++VF M R++ +W+AMI G A+HG
Sbjct: 365 RLKGVTNASSLR------TSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHG 418
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A A F++M + GI+P+ +TF+GLL AC H G +D GR F SMT +Y ++P++EHY
Sbjct: 419 RANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHY 478
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCM+DL +G +EA + I M ++P+GV+W +LL C++H N++L E ++ L +++P
Sbjct: 479 GCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEP 538
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +V+LSNIYA AERW +VA+ R L+ + G+KK PG SSI +D VVHEF+ GD+ HP
Sbjct: 539 ENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHP 598
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ M E++ ++ G++P+TS VL ++EE+ KE L HSEKLA+ FGL++T PG
Sbjct: 599 RNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPG 658
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T + I+KNLRVC +CH A KLIS+I REI+ RDR RFH F+ G CSC DYW
Sbjct: 659 TKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGECSCNDYW 710
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 2/169 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + N GF N+++ N LID+Y KCG LE A +F + + V +W+ +I G
Sbjct: 256 QVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMN 315
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY-GIIPQIEH 119
KEAL F M+ G KPN VT + +L AC H+G +D GR + G+
Sbjct: 316 LYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSL 375
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++D+ ++ G ++ A + +M + + W A++ G +H + A
Sbjct: 376 RTSLIDMYAKCGDIEAAQQVFDSM-LNRSLSSWNAMIFGFAMHGRANAA 423
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 85/159 (53%), Gaps = 5/159 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ LI Y G +E A ++F E+ + V +W+A I G A G KEAL F KM
Sbjct: 167 RDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKM 226
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
++ ++P+ T + +L AC G ++ GR+ +S ++G ++ ++DL S+ G
Sbjct: 227 MKTNVRPDESTMVTVLSACAQSGSIELGRQ-VHSWINDHGFGXNLKIVNALIDLYSKCGE 285
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
L+ A + + K + + W L+GG + +++L +EA
Sbjct: 286 LETACGLFQGLSNK-DVISWNTLIGG---YTHMNLYKEA 320
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 96/219 (43%), Gaps = 12/219 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEG---ARRVFIEMEERTVFTWSAMIQGLAI 58
+H ++G + L++ V +G A VF ++E + W+ M +G A+
Sbjct: 21 IHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLIWNTMFRGHAL 80
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
AL + M+ +G+ PN TF LL +C EG++ + ++G +
Sbjct: 81 SSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQ-LHGQVLKFGFDLDLY 139
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ ++ + + G L++A + + + + V + AL+ G I E A + D++
Sbjct: 140 IHTSLISMYVQNGRLEDAQK-VXDKSSHRDVVSYTALITGYASRGXI---ESAHKMFDEI 195
Query: 179 DPLNN--GYHVVLSNIYAEAERWEDVARVRKLMRNLGVK 215
P+ + ++ +S YAE +++ + K M V+
Sbjct: 196 -PVKDVVSWNAXISG-YAETGNYKEALELFKKMMKTNVR 232
>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Vitis vinifera]
Length = 785
Score = 363 bits (931), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 169/353 (47%), Positives = 239/353 (67%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIH 59
++H + +SG ++ V N LI MY K G + AR VF + +R TW++MI LA H
Sbjct: 433 QIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQH 492
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G +EALT F +M+E GIKP+ +T++G+L AC H+G V++GR ++ M + IIP H
Sbjct: 493 GLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSH 552
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CM+DL RAG LQEA+ FI NMPI+P+ + WG+LL C+VHKN++LAE A+ +L ++
Sbjct: 553 YACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIE 612
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N+G + L+N+Y+ +WE+ A +RK M++ GVKK G+S + + VH F D H
Sbjct: 613 PENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLH 672
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
PQ + I++M K+ +K G++P+T VL D+EE+ KE+ L HSEKLA+ FGL+ TP
Sbjct: 673 PQRDAIYEMMAKIWKEIKKMGFVPDTESVLHDLEEELKEQILSHHSEKLAIAFGLICTPE 732
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T +RIMKNLRVC DCH+A K IS++V REI+VRD RFH F+ G CSC DYW
Sbjct: 733 NTTLRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKNGLCSCRDYW 785
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 6/166 (3%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
L+D YVK G + ARR+F + R V W+AMI G +G ++A+ F MI+ G K
Sbjct: 350 TALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPK 409
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
PN T +L + +D GR+ ++ T G + ++ + +++G + +A
Sbjct: 410 PNNYTLATMLSVSSSLASLDHGRQ-IHASATRSGNASSVSVSNALITMYAKSGSINDARW 468
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNG 184
+ K + + W +++ H L EEA +++ L NG
Sbjct: 469 VFNLIHWKRDTITWTSMIIALAQH---GLGEEALTLFERM--LENG 509
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 2/161 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N ++ Y K G LE A RVF EM E +W+AMI G GQ + A+ F +M+ +
Sbjct: 83 NIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVP 142
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P T +L +C + + GR+ +S ++G+ I ++++ +++G A
Sbjct: 143 PTQFTLTNVLASCAAVECLGIGRK-VHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKI 201
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
M +K W ++ +DLA+ Q+ + D
Sbjct: 202 VFDRMKLKSTS-SWNTMISSHMQSGLVDLAQVQFEQMIERD 241
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 79/143 (55%), Gaps = 5/143 (3%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI-EIGI 77
NT+I +++ G ++ A+ F +M ER V +W+AMI G HG +EAL F+KM+ +
Sbjct: 215 NTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSS 274
Query: 78 KPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
KP+ T L AC ++ + G++ + + TE+ + + ++ + S++G ++ A
Sbjct: 275 KPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGN--ALISMYSKSGGVEIA 332
Query: 137 YEFI-RNMPIKPNGVVWGALLGG 158
+ I ++M + + + ALL G
Sbjct: 333 QKIIEQSMISNLDVIAFTALLDG 355
>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Glycine max]
Length = 617
Score = 363 bits (931), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 176/354 (49%), Positives = 242/354 (68%), Gaps = 3/354 (0%)
Query: 2 VHEYSNQSGFR--RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
+ + + SGF N+ V + LIDMY KCG +E A VF M ER VF++S+MI G AIH
Sbjct: 264 IRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIH 323
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G+A+ A+ F M+E G+KPN VTF+G+L AC H G VD+G++ F SM YG+ P E
Sbjct: 324 GRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAEL 383
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CM DLLSRAG+L++A + + MP++ +G VWGALLG VH N D+AE AS++L +L+
Sbjct: 384 YACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASKRLFELE 443
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITV-DGVVHEFVAGDET 238
P N G +++LSN YA A RW+DV++VRKL+R +KK PGWS + +G++H+FVAGD +
Sbjct: 444 PDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEAKNGMIHKFVAGDVS 503
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
HP+ +I + LL+ +K GY PN S + I ++EK L HSEKLAL FGL++T
Sbjct: 504 HPKINEIKKELNDLLERLKGIGYQPNLSSLPYGINDREKRLLLMAHSEKLALAFGLLSTD 563
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G+ I+IMKNLR+CEDCH S++ R+IVVRD RFH F G+CSC ++W
Sbjct: 564 VGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVVRDNTRFHHFLNGACSCSNFW 617
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 43/190 (22%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVF---------------------- 47
GF ++ V N +IDMYVKCG L AR VF EM ER V
Sbjct: 140 GFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLF 199
Query: 48 ---------TWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMG--- 95
TW+AM+ G A + +AL F ++ + G++ + VT +G++ AC +G
Sbjct: 200 DGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASK 259
Query: 96 ---WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVW 152
W+ + + ++ +G+ + ++D+ S+ G ++EAY+ + M + N +
Sbjct: 260 YANWIRD-----IAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRER-NVFSY 313
Query: 153 GALLGGCRVH 162
+++ G +H
Sbjct: 314 SSMIVGFAIH 323
>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
Length = 587
Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 171/352 (48%), Positives = 238/352 (67%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y N + N V L+DMY KCG + A +VF ME + V W+ +I G+AIHG
Sbjct: 236 LHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGH 295
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA F +M E G++PN +TF+ +L AC H G VDEG++ M++ YGI P++EHYG
Sbjct: 296 VKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYG 355
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C++DLL+RAG L+EA E I MP++PN GALLGGCR+H N +L E ++L L P
Sbjct: 356 CVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFELGEMVGKRLINLQPC 415
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +++LSNIYA A++W+D +VR LM+ G+ K PG S I + G+VH FVAGD +HP+
Sbjct: 416 HSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPE 475
Query: 242 AEKIFQMWEKLLDGMKLK-GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ KI++ ++ +K G+ +T VLLD+EE++KE L HSEKLA+ +GL++
Sbjct: 476 SNKIYEKLNEIHTRLKSAIGHSADTGDVLLDMEEEDKEHALPVHSEKLAIAYGLLHLDSK 535
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC DCH KLIS++ REI+VRDRNRFH F+ G CSC D+W
Sbjct: 536 EAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 587
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 71/141 (50%), Gaps = 2/141 (1%)
Query: 37 VFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGW 96
+F EM R V +W++M+ A G+ EAL F++M +G+KP T + LL AC H+G
Sbjct: 170 LFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGA 229
Query: 97 VDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
+D+G + + I +VD+ ++ G + A + M K + + W ++
Sbjct: 230 LDKGLHLHTYINDNRIEVNSIVGTA-LVDMYAKCGKISLATQVFNAMESK-DVLAWNTII 287
Query: 157 GGCRVHKNIDLAEEASRQLDQ 177
G +H ++ A+ +++ +
Sbjct: 288 AGMAIHGHVKEAQRLFKEMKE 308
>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Glycine max]
Length = 693
Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 165/351 (47%), Positives = 240/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y +G+ + L+ MY KCG ARRVF EM + + +W+++I G A +GQ
Sbjct: 343 VHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQ 402
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL F +++ G KP+ VT++G+L AC H G VD+G +F+S+ ++G++ +HY
Sbjct: 403 PDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYA 462
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C++DLL+R+G +EA I NMP+KP+ +W +LLGGCR+H N++LA+ A++ L +++P
Sbjct: 463 CVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPE 522
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N ++ L+NIYA A W +VA VRK M N+G+ K PG S I + VH F+ GD +HP+
Sbjct: 523 NPATYITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWIEIKRQVHVFLVGDTSHPK 582
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
I + +L +K +GY+P+T+ VL D+EE++KE+ L HSEKLA+ FG+++TPPGT
Sbjct: 583 TSDIHEFLGELSKKIKEEGYVPDTNFVLHDVEEEQKEQNLVYHSEKLAVVFGIISTPPGT 642
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PI++ KNLR C DCH A K IS+IV R+I VRD NRFHCF+ GSCSC DYW
Sbjct: 643 PIKVFKNLRTCVDCHTAIKYISKIVQRKITVRDSNRFHCFEDGSCSCKDYW 693
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y ++ + V + L+D+Y KCG L+ AR +F +M++R V +W+ MI G+
Sbjct: 242 IHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGR 301
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+E F +++ G++PN TF G+L+AC G+ + G P
Sbjct: 302 REEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKE-VHGYMMHAGYDPGSFAIS 360
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V + S+ G + A M +P+ V W +L+ G
Sbjct: 361 ALVHMYSKCGNTRVARRVFNEMH-QPDLVSWTSLIVG 396
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 83/237 (35%), Gaps = 69/237 (29%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGC------------------------------ 30
RVH ++ S F + + N L+DMY KCG
Sbjct: 108 RVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLG 167
Query: 31 -LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEAL-----------TSFNK------- 71
LE AR++F EM +R F+W+A I G H Q +EAL +S NK
Sbjct: 168 RLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSAL 227
Query: 72 ------------------MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGI 113
+I + + V + LL G G +DE R F M +
Sbjct: 228 AASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVV 287
Query: 114 IPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
+ C D GFL + + ++PN + +L C H L +E
Sbjct: 288 SWTTMIHRCFEDGRREEGFL--LFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKE 342
>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
Length = 640
Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 177/360 (49%), Positives = 241/360 (66%), Gaps = 9/360 (2%)
Query: 2 VHEYSNQSGFRR---NIRVCNTLIDMYVKCGCLEGARRVFIEME--ERTVFTWSAMIQGL 56
+H + S RR N RV LIDMY KCG LE A VF ++ +R + W+AM+ G
Sbjct: 281 LHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGY 340
Query: 57 AIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ 116
A+HG ++EAL +F ++ G+ P +TFIG+L+AC H G VDEGR F SM EYGI P+
Sbjct: 341 AMHGHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPK 400
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMP-IKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
+EHYGCMVDLL RAG ++EA+E +++M KP+ V+W +LL CR+HKN++L + + L
Sbjct: 401 VEHYGCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACRLHKNMELGQRIADHL 460
Query: 176 DQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAG 235
N+G +V+LSN+YA A W +V RVR +MR G++K PG S++ V V EFVAG
Sbjct: 461 VANGLANSGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKEPGCSAVEVGRRVVEFVAG 520
Query: 236 DETHPQAEKIFQMWEKLLDGMKLKGYIPNT---SVVLLDIEEKEKEKFLYRHSEKLALTF 292
D +HP+A +I+ E++ + +G++P T L D + KE+ L HSEKLAL F
Sbjct: 521 DRSHPRAAEIYAKLEEVNGMARARGHVPRTELVLHDLDDDDTAAKEQALAVHSEKLALAF 580
Query: 293 GLMNTPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GL++TPPGT I+I+KNLR C DCHA KL+SE+ R+IV RDRNRFH F GSC+CGDYW
Sbjct: 581 GLISTPPGTAIKIVKNLRACADCHAVLKLVSEVTGRKIVFRDRNRFHHFVDGSCTCGDYW 640
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 76/160 (47%), Gaps = 3/160 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
++ Y K G L+ AR +F + + + W+AM+ G HG+ EAL F +M+ G++
Sbjct: 197 TAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVE 256
Query: 79 PNGVTFIGLLHACGHMGWVDEGR--RFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
P+ V+ + L A +G + GR F + ++ + ++D+ + G L++A
Sbjct: 257 PDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDA 316
Query: 137 YEFIRNMPIKPNGVV-WGALLGGCRVHKNIDLAEEASRQL 175
++ +V W A++ G +H + A A QL
Sbjct: 317 VAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQL 356
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 169/347 (48%), Positives = 248/347 (71%), Gaps = 2/347 (0%)
Query: 2 VHEYSNQS--GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
+H Y ++ G N + +LIDMY KCG +E A +VF + +++ + +AMI G A+H
Sbjct: 333 IHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMH 392
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G+A A ++M + GI+P+ +TF+GLL AC H G D GR+ F SMT +Y I P++EH
Sbjct: 393 GRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEH 452
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YGCM+DLL R+G +EA E I +M ++P+GV+WG+LL C++HKN++L E +++L +++
Sbjct: 453 YGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIE 512
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N G +V+LSNIYA + RW+DVARVR L+ + G+KK PG SSI +D +VHEF+ GD+ H
Sbjct: 513 PKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFH 572
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
PQ ++I++M E++ + G++ +TS VL ++EE+ KE L HSEKLA+ FGL++T P
Sbjct: 573 PQNKEIYKMLEEIDSLLAETGFVSDTSEVLQEMEEELKEGALSYHSEKLAIAFGLISTKP 632
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSC 346
GT +RI+KNLRVC +CH A KLIS+I REI+ RDR+RFH F+ G C
Sbjct: 633 GTKLRIVKNLRVCRNCHEATKLISKIYKREIIARDRSRFHHFKDGMC 679
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 98/185 (52%), Gaps = 8/185 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + GF N+++ N LID+Y KCG +E A +F ++ + V +W+ +I G A
Sbjct: 231 QIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYIN 290
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY-GIIPQIEH 119
KEAL F +M+++G PN VT + +L AC H+G +D GR + + GII
Sbjct: 291 HHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSL 350
Query: 120 YGCMVDLLSRAGFLQEA---YEFIRNMPIKP-NGVVWGALLGGCRVHKNIDLAEEASRQL 175
++D+ ++ G ++ A ++ I N + N +++G + G R DL +
Sbjct: 351 QTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHG-RADAAFDLLSRMKK-- 407
Query: 176 DQLDP 180
D ++P
Sbjct: 408 DGIEP 412
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 80/146 (54%), Gaps = 2/146 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ +I Y G ++ A+++F E+ + V +W+AMI G A G+ KEAL FN+M
Sbjct: 142 RDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEM 201
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+++ +KP+ T +L C H G V+ GR+ +S +G ++ ++DL S+ G
Sbjct: 202 MKMDVKPDESTMATVLSTCTHSGNVELGRQ-IHSWIDNHGFGSNLKLVNALIDLYSKCGE 260
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGG 158
++ A+ + K + + W L+GG
Sbjct: 261 MERAHGLFEGLQYK-DVISWNTLIGG 285
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90
L A VF ++E +W+ MI+G A+ AL + MI +G+ PN TF L +
Sbjct: 28 LPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKS 87
Query: 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGV 150
C EG++ ++ +YG+ + + ++ + ++ G +++A++ + + + V
Sbjct: 88 CAKSKAAQEGKQ-IHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHK-VFDTSSHRDVV 145
Query: 151 VWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN--GYHVVLSNIYAEAERWEDVARVRKL 208
+ A++ G N+D +A + D++ P+ + ++ ++S YAE R+++ +
Sbjct: 146 SYTAMITGYASRGNMD---KAQKMFDEI-PIKDVVSWNAMISG-YAEIGRYKEALELFNE 200
Query: 209 MRNLGVKKTPGWSSITVDGVVH 230
M + VK + + H
Sbjct: 201 MMKMDVKPDESTMATVLSTCTH 222
>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
Length = 665
Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 170/348 (48%), Positives = 245/348 (70%)
Query: 5 YSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKE 64
Y + G + ++ V N LIDMY KCG +E A VF +M R FTW+A+I GLA++G+ +E
Sbjct: 318 YMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEE 377
Query: 65 ALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMV 124
A+ F +M+ P+ VTF+G+L AC H G VD+GR FF SMT Y I P + HYGC++
Sbjct: 378 AIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLI 437
Query: 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNG 184
D+L RAG L+EA + I MP+KPN +WG LL CRV+ N ++ E A+ +L +LDP N+
Sbjct: 438 DVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLELDPDNST 497
Query: 185 YHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEK 244
+++LSN+YA++ RW+DV R+R+++ G+KK PG S I ++G++HEFVA D +HP ++
Sbjct: 498 AYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFVAADRSHPMNKE 557
Query: 245 IFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIR 304
I+ E +L ++ GY+P+ + VL+++ E+EK+K LY HSEKLA+TF L+ + IR
Sbjct: 558 IYSKLENVLTDLRNAGYVPDVTEVLVEVTEEEKQKVLYWHSEKLAVTFALLTSESNVIIR 617
Query: 305 IMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I+KNLR+C DCH A KLIS++ RE++VRDR RFH F+ GSCSC DYW
Sbjct: 618 IVKNLRMCLDCHNAIKLISKLYGREVIVRDRTRFHHFRHGSCSCKDYW 665
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 93/219 (42%), Gaps = 41/219 (18%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGA-------------------------- 34
+VH+ +SG + RV N L+DMY +CG ++ A
Sbjct: 182 QVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSG 241
Query: 35 -----RRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH 89
R +F M ER W+AMI G G+ ++AL +F M ++ + T + ++
Sbjct: 242 QVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVT 301
Query: 90 ACGHMGWVDEGR--RFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKP 147
AC +G ++ G R + GI + ++D+ S+ G ++ A + ++M +
Sbjct: 302 ACAQLGALETGEWARIYMG---RLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNR- 357
Query: 148 NGVVWGALLGGCRVH----KNIDLAEEASRQLDQLDPLN 182
+ W A++ G V+ + ID+ R L D +
Sbjct: 358 DKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVT 396
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 57/138 (41%), Gaps = 12/138 (8%)
Query: 49 WSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMT 108
W+A+I G G+ + + SF M+ VT++ +L ACG +G+ M
Sbjct: 129 WNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACG------KGKDLLLGMQ 182
Query: 109 T-----EYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHK 163
E G++P +VD+ + G + A+ M ++ W +++ G
Sbjct: 183 VHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMA-SWTSVISGLVRSG 241
Query: 164 NIDLAEEASRQLDQLDPL 181
+D A + + + D +
Sbjct: 242 QVDRARDLFDHMPERDTI 259
>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g49170, chloroplastic-like [Cucumis sativus]
Length = 849
Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 163/352 (46%), Positives = 242/352 (68%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SG + N VCN LI MY +CG +E A +VF +ME+R V +W+++I G A HG
Sbjct: 498 QIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHG 557
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A +AL F+KM+E G++PN VT+I +L AC H+G V+EG + F SM TE+G+IP++EHY
Sbjct: 558 FATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHY 617
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VD+L R+G L EA +FI +MP K + +VW LG CRVH N++L + A++ + + +P
Sbjct: 618 ACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEP 677
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +++LSN+YA +W++V+ +RK M+ + K G S + V+ VH+F GD +HP
Sbjct: 678 HDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGDTSHP 737
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+A +I+ + L +K GY+PN VL D+EE++KEK L++HSEK+A+ FGL++T
Sbjct: 738 KAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKM 797
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLR+C DCH+A K IS REI+VRD NRFH + G CSC +YW
Sbjct: 798 KPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 71/158 (44%), Gaps = 5/158 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM-EERTVFTWSAMIQGLAIHG 60
VHE QS + + N+LI +Y KCG E A +F M R + +WSAM+ A +
Sbjct: 88 VHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNN 147
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
AL +F MIE G PN F AC +V G F + G +
Sbjct: 148 MGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIF-GFVIKTGYLQSDVCV 206
Query: 121 GC-MVDLLSRA-GFLQEAYEFIRNMPIKPNGVVWGALL 156
GC ++D+ + G L A++ MP + N V W ++
Sbjct: 207 GCGLIDMFVKGRGDLVSAFKVFEKMP-ERNAVTWTLMI 243
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+V ++ + GF V N+LI MY + G ++ AR+ F + E+ + +++ +I A +
Sbjct: 397 QVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNL 456
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++EAL FN++ + G+ + TF LL +G + +G + ++ + G+
Sbjct: 457 NSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQ-IHARVIKSGLKLNQSVC 515
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++ + SR G ++ A++ +M + N + W +++ G H
Sbjct: 516 NALISMYSRCGNIESAFQVFEDMEDR-NVISWTSIITGFAKH 556
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 122/302 (40%), Gaps = 54/302 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKC---GCLEGARRVFIEMEERTVFTWSAMIQGLA 57
++H + + G + V LI+MY KC G + AR++F ++ + VF+W+AMI G
Sbjct: 292 QLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYV 351
Query: 58 IH-GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFY----------- 105
G +EAL F MI + PN TF L AC ++ + G + F
Sbjct: 352 QKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVN 411
Query: 106 ----SMTTEYGIIPQIE---------------HYGCMVDLLSRAGFLQEAYEF---IRNM 143
S+ + Y +I+ Y ++D ++ +EA E I +
Sbjct: 412 CVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQ 471
Query: 144 PIKPNGVVWGALLGGCRVHKNIDLAEEA-SRQLDQLDPLNNGYHVVLSNIYAEAERWEDV 202
+ + + +LL G I E+ +R + LN L ++Y+ E
Sbjct: 472 GMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESA 531
Query: 203 ARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYI 262
+V + M + + W+SI + G H A + +++ K+L+ +G
Sbjct: 532 FQVFEDMED---RNVISWTSI---------ITGFAKHGFATQALELFHKMLE----EGVR 575
Query: 263 PN 264
PN
Sbjct: 576 PN 577
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 4/141 (2%)
Query: 21 LIDMYVKC-GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP 79
LIDM+VK G L A +VF +M ER TW+ MI L G A EA+ F MI G +P
Sbjct: 210 LIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEP 269
Query: 80 NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE--AY 137
+ T G++ AC +M + G++ +S +G+ C++++ ++ A
Sbjct: 270 DRFTLSGVISACANMELLLLGQQ-LHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAA 328
Query: 138 EFIRNMPIKPNGVVWGALLGG 158
I + + N W A++ G
Sbjct: 329 RKIFDQILDHNVFSWTAMITG 349
>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 716
Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 172/352 (48%), Positives = 235/352 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S ++ + +++ V N LIDMY KCG ++ AR VF + ER +W+AMI G ++HG
Sbjct: 365 QIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHG 424
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL +F M E PN +TF+ +L AC + G +D G+ +F SM +YGI P +EHY
Sbjct: 425 LVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHY 484
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMV LL R+G L +A + I +P++PN VW ALLG C +H ++DL +++Q+ Q+DP
Sbjct: 485 TCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDP 544
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ HV+LSNIYA RW VA VRK M+N GVKK PG S I G+VH F GD +HP
Sbjct: 545 QDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSHP 604
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ I M E L + GY+P+ + VL D+E+ EK++ L+ HSE+LAL FGL+ TP
Sbjct: 605 DMKMISGMLEWLNMKTEKAGYVPDLNAVLRDVEDDEKKRHLWVHSERLALAFGLIRTPSR 664
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLR+C DCH+A KLIS+IV R+I++RD NRFH FQ G CSCGDYW
Sbjct: 665 GHIRILKNLRICTDCHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGDYW 716
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 97/183 (53%), Gaps = 2/183 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + G N+ V N L+D+Y KCG L+ + ++F+E+ R TW+ MI G G
Sbjct: 264 QVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSG 323
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+AL+ + M+E ++ + VT+ +L AC + ++ G + +S++ + +
Sbjct: 324 DGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQ-IHSLSLKTIYDKDVVVG 382
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
++D+ ++ G ++ A + +M + + + W A++ G +H + A +A + + + +
Sbjct: 383 NALIDMYAKCGSIKNA-RLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETEC 441
Query: 181 LNN 183
+ N
Sbjct: 442 VPN 444
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++ + ++ V L+D+Y K G RVF EM + V WS MI A Q
Sbjct: 164 VHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQ 223
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++EA+ F +M + PN TF +L +C + + G++ + + G+ +
Sbjct: 224 SREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQ-VHCHVLKVGLDGNVFVSN 282
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ ++ G L + + +P + N V W ++ G
Sbjct: 283 ALMDVYAKCGRLDNSMKLFMELPNR-NEVTWNTMIVG 318
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 104/250 (41%), Gaps = 37/250 (14%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G N V LID Y CG + AR+ F + + + +W+ M+ A + + +++L F
Sbjct: 71 GHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLF 130
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR-------RFFYSMTTEYGI--------- 113
+M +G PN TF G+L AC + G+ + Y M G+
Sbjct: 131 AEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKF 190
Query: 114 ------------IPQ--IEHYGCMVDLLSRAGFLQEAYEF---IRNMPIKPNGVVWGALL 156
+P+ + + M+ +++ +EA E +R + PN + ++L
Sbjct: 191 GDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVL 250
Query: 157 GGCRVHKNIDLAEEASRQLDQLDPLNNGY-HVVLSNIYAEAERWEDVARVRKLMRNLGVK 215
C +N+ L ++ + ++ N + L ++YA+ R ++ KL L +
Sbjct: 251 QSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSM---KLFMELPNR 307
Query: 216 KTPGWSSITV 225
W+++ V
Sbjct: 308 NEVTWNTMIV 317
>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
Length = 513
Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 168/351 (47%), Positives = 242/351 (68%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + +SG R + V NT++DMY K G + AR+VF ++++ + TW++M+ A +G
Sbjct: 164 VHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGL 223
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA+T F +M + G+ N +TF+ +L AC H G V EG+++F M E+ + P+I+HY
Sbjct: 224 GREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYF-DMMKEHNLEPEIDHYV 282
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+VDLL RAG L +A FI MP+KP VWGALLG CR+HKN + + A+ + +LDP
Sbjct: 283 TVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPD 342
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G V+L NIYA +W+ ARVRK+M+ GVKK P S + ++ VH FVA D+THP+
Sbjct: 343 DTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPR 402
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+E+I++ WE++ ++ GY+PNT VLL ++E+E++ L HSEK+AL F L+N P G
Sbjct: 403 SEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGA 462
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRIMKN+R+C DCH+AF+ IS++ REIVVRD NRFH F +GSCSCGDYW
Sbjct: 463 TIRIMKNIRICGDCHSAFRYISKVFEREIVVRDTNRFHHFSSGSCSCGDYW 513
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + + ++ V + L+DMY +CG ++ A VF ++E + +W+A+I G A G
Sbjct: 62 QIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKG 121
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ L F +M G + T+ + A +G +++G ++ ++ + G
Sbjct: 122 DGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQG-KWVHAHMIKSGERLSAFVG 180
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
++D+ +++G + +A + ++ K + V W ++L
Sbjct: 181 NTILDMYAKSGSMIDARKVFDHVD-KKDLVTWNSML 215
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 41 MEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG 100
M R + +W+++I G A + EAL M+ KPNG TF LL A G G
Sbjct: 1 MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIG 60
Query: 101 RRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ +++T +Y + ++D+ +R G + A + K NGV W AL+ G
Sbjct: 61 EQ-IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESK-NGVSWNALIAG 116
>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Glycine max]
Length = 579
Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 164/352 (46%), Positives = 233/352 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H Y + G+R + +CN+LI MY +CGCL+ A VF M + V +WSAMI GLA++G
Sbjct: 228 RIHGYIMERGYRDALNLCNSLISMYSRCGCLDKAYEVFKGMGNKNVVSWSAMISGLAMNG 287
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ +F +M+ IG+ P+ TF G+L AC + G VDEG FF+ M+ E+G+ P + HY
Sbjct: 288 YGREAIEAFEEMLRIGVLPDDQTFTGVLSACSYSGMVDEGMSFFHRMSREFGVTPNVHHY 347
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLL RAG L +AY+ I +M +KP+ +W LLG CR+H ++ L E L +L
Sbjct: 348 GCMVDLLGRAGLLDKAYQLIMSMVVKPDSTMWRTLLGACRIHGHVTLGERVIGHLIELKA 407
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
G +V+L NIY+ A WE VA VRKLM+N ++ TPG S+I + G VHEFV D +H
Sbjct: 408 QEAGDYVLLLNIYSSAGHWEKVAEVRKLMKNKSIQTTPGCSTIELKGAVHEFVVDDVSHS 467
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I++ +++ +++ GY+ S L +++KEK L HSEKLA+ FG++ TPPG
Sbjct: 468 RNREIYETLDEINHQLRIAGYVVELSSELHKMDDKEKGYVLSHHSEKLAVAFGVLATPPG 527
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T +R+ NLRVC DCH KL S + NR++V+RD NRFH F+ G CSC DYW
Sbjct: 528 TILRVASNLRVCVDCHNFLKLFSGVYNRDVVLRDHNRFHHFRGGRCSCSDYW 579
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 116/274 (42%), Gaps = 18/274 (6%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + G + + + ++D+Y C A +VF EM R W+ MI +
Sbjct: 125 QVHCNIFKDGHQWDTLLLTAVMDLYSLCQRGGDACKVFDEMPHRDTVAWNVMISCCIRNN 184
Query: 61 QAKEALTSFNKMIEIGIK--PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+ ++AL+ F+ M K P+ VT + LL AC H+ ++ G R + E G +
Sbjct: 185 RTRDALSLFDVMQGSSYKCEPDDVTCLLLLQACAHLNALEFGER-IHGYIMERGYRDALN 243
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++ + SR G L +AYE + M K N V W A++ G ++ A EA ++ ++
Sbjct: 244 LCNSLISMYSRCGCLDKAYEVFKGMGNK-NVVSWSAMISGLAMNGYGREAIEAFEEMLRI 302
Query: 179 D--PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGV-------- 228
P + + VLS E ++ ++ R GV VD +
Sbjct: 303 GVLPDDQTFTGVLSACSYSGMVDEGMSFFHRMSREFGVTPNVHHYGCMVDLLGRAGLLDK 362
Query: 229 VHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYI 262
++ + P + MW LL ++ G++
Sbjct: 363 AYQLIMSMVVKPDS----TMWRTLLGACRIHGHV 392
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 174/352 (49%), Positives = 244/352 (69%), Gaps = 6/352 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+ +N S R +LIDMY KCG +E A +VF M +++ +W+AMI G A+HG
Sbjct: 326 RLKGVTNASSLR------TSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHG 379
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A + F++M +IGI+P+ +TF+GLL AC H G +D GR F SMT +Y + P++EHY
Sbjct: 380 RADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHY 439
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCM+DLL +G +EA E I M ++P+GV+W +LL C++H N++LAE ++ L +++P
Sbjct: 440 GCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIEP 499
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N +++LSNIYA A RWEDVAR+R L+ +KK PG SSI VD VV EFV GD+ HP
Sbjct: 500 ENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVFEFVVGDKFHP 559
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q +I+ M E++ ++ G++P+TS VL ++EE+ KE L HSEKLA+ FGL++T PG
Sbjct: 560 QNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPG 619
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T + I+KNLRVC +CH A KL+S+I REIV RDR RFH F+ G CSC DYW
Sbjct: 620 TKLTIVKNLRVCRNCHEATKLLSKIYKREIVARDRTRFHHFRDGVCSCNDYW 671
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 2/167 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + GF N+++ N LID+Y KCG +E A +F + + V +W+ +I G
Sbjct: 217 QVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMN 276
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY-GIIPQIEH 119
KEAL F +M+ G PN VT + +L AC H+G +D GR + G+
Sbjct: 277 LYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSL 336
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNID 166
++D+ ++ G ++ A++ +M + + W A++ G +H D
Sbjct: 337 RTSLIDMYAKCGDIEAAHQVFNSM-LHKSLSSWNAMIFGFAMHGRAD 382
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 89/159 (55%), Gaps = 5/159 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ LI Y G + A+++F E+ + V +W+AMI G A G KEAL F +M
Sbjct: 128 RDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEM 187
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+++ ++P+ T++ +L AC H G ++ GR+ +S ++G ++ ++DL S+ G
Sbjct: 188 MKMNVRPDESTYVTVLSACAHSGSIELGRQ-VHSWVDDHGFDSNLKIVNALIDLYSKCGE 246
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
++ A + + K + + W L+GG + +++L +EA
Sbjct: 247 VETACGLFQGLSYK-DVISWNTLIGG---YTHMNLYKEA 281
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 93/198 (46%), Gaps = 8/198 (4%)
Query: 21 LIDMYVKCGCLEG---ARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGI 77
LI++ V +G A VF ++E W+ MI+G A+ +LT + M+ +G+
Sbjct: 1 LIELCVPSPHFDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGL 60
Query: 78 KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAY 137
PN TF LL +C EG++ + + G + + ++ + + L++AY
Sbjct: 61 LPNSYTFPFLLKSCAKSKTFTEGQQ-IHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAY 119
Query: 138 EFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAE 197
+ + + + V + AL+ G +I A++ ++ D ++ ++ ++S YAE
Sbjct: 120 K-VFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVS--WNAMISG-YAETG 175
Query: 198 RWEDVARVRKLMRNLGVK 215
+++ + + M + V+
Sbjct: 176 CYKEALELFEEMMKMNVR 193
>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 818
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 168/351 (47%), Positives = 234/351 (66%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + ++ N+ V L+DMY KCG ++ AR++F M+ER V TW+AMI G HG
Sbjct: 469 IHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGV 528
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KE L FN+M + +KPN +TF+ ++ AC H G+V+EG F SM +Y + P ++HY
Sbjct: 529 GKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYS 588
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
MVDLL RAG L +A+ FI+ MPIKP V GA+LG C++HKN++L E+A+++L +LDP
Sbjct: 589 AMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPD 648
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
GYHV+L+NIYA W+ VA+VR M + G+ KTPG S + + +H F +G HP+
Sbjct: 649 EGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTFYSGSTNHPE 708
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++KI+ E L D +K GY+P+ + D+EE K++ L HSE+LA+ FGL+NT PGT
Sbjct: 709 SKKIYAFLETLGDEIKAAGYVPDPDSI-HDVEEDVKKQLLSSHSERLAIAFGLLNTSPGT 767
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ I KNLRVC DCH K IS + REI+VRD RFH F+ GSCSCGDYW
Sbjct: 768 TLHIRKNLRVCGDCHDTTKYISLVTGREIIVRDLRRFHHFKNGSCSCGDYW 818
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ +SGF + V N L+DMY KCG AR VF M +TV +W+ MI G A +G+
Sbjct: 268 IHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGE 327
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++EA +F KM++ G P VT +G+L AC ++G ++ G F + + + + +
Sbjct: 328 SEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERG-WFVHKLLDKLKLDSNVSVMN 386
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + S+ + A N+ + V W A++ G
Sbjct: 387 SLISMYSKCKRVDIAASIFNNL--EKTNVTWNAMILG 421
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 93/214 (43%), Gaps = 7/214 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +GF N+ V ++ +Y KC ++ A ++F M+ + + +W+ ++ G A +G
Sbjct: 167 IHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGH 226
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AK AL +M E G KP+ VT + +L A M + GR + G +
Sbjct: 227 AKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRS-IHGYAFRSGFESLVNVTN 285
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
++D+ + G + A + M K V W ++ GC +N + E + L LD
Sbjct: 286 ALLDMYFKCGSARIARLVFKGMRSK-TVVSWNTMIDGCA--QNGESEEAFATFLKMLDEG 342
Query: 182 NNGYHVVLSNIYAEAERWEDVAR---VRKLMRNL 212
V + + D+ R V KL+ L
Sbjct: 343 EVPTRVTMMGVLLACANLGDLERGWFVHKLLDKL 376
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 87/176 (49%), Gaps = 7/176 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+ ++ N+ V N+LI MY KC ++ A +F +E+ V TW+AMI G A +G
Sbjct: 369 VHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTNV-TWNAMILGYAQNGC 427
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEAL F M GIK + T +G++ A V+ ++ + + + +
Sbjct: 428 VKEALNLFCMMQSQGIKLDCFTLVGVITALADFS-VNRQAKWIHGLAVRACMDNNVFVST 486
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASR 173
+VD+ ++ G ++ A + +M + + + W A++ G H + +DL E +
Sbjct: 487 ALVDMYAKCGAIKTARKLF-DMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQK 541
>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Glycine max]
Length = 778
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 174/351 (49%), Positives = 224/351 (63%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+ +NI V LIDMY KCG + A ++F E+ TW+ MI G +HG
Sbjct: 428 VHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGY 487
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL FN+M+ +G +P+ VTF+ +L+AC H G V EG F++M +Y I P EHY
Sbjct: 488 GDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYA 547
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+L RAG L++A EFIR MP++P VWG LLG C +HK+ +LA AS +L +LDP
Sbjct: 548 CMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERLFELDPG 607
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+V+LSNIY+ + A VR+ ++ + KTPG + I V+G H FV GD +H Q
Sbjct: 608 NVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVCGDRSHSQ 667
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
I+ E+L M+ GY T L D+EE+EKE HSEKLA+ FGL+ T PGT
Sbjct: 668 TTSIYAKLEELTGKMREMGYQSETVTALHDVEEEEKELMFNVHSEKLAIAFGLITTEPGT 727
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC DCHAA K IS+I R IVVRD NRFH F+ G CSCGDYW
Sbjct: 728 EIRIIKNLRVCLDCHAATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 778
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 2/155 (1%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
+SG V L +Y + ++ AR++F E E+TV W+AMI G A G + A++
Sbjct: 333 KSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAIS 392
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F +M+ PN VT +L AC +G + G+ + + + I ++D+
Sbjct: 393 LFQEMMTTEFTPNPVTITSILSACAQLGALSFGKS-VHQLIKSKNLEQNIYVSTALIDMY 451
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++ G + EA + ++ + N V W ++ G +H
Sbjct: 452 AKCGNISEASQLF-DLTSEKNTVTWNTMIFGYGLH 485
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 2/174 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ GF N+ V + L+D+Y K + AR+VF +M +R W+ MI GL +
Sbjct: 125 LHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCC 184
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+++ F M+ G++ + T +L A M V G + + G
Sbjct: 185 YDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMG-IQCLALKLGFHFDDYVLT 243
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
++ + S+ + A + M KP+ V + AL+ G + + A + R+L
Sbjct: 244 GLISVFSKCEDVDTA-RLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFREL 296
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 117/297 (39%), Gaps = 51/297 (17%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF + V LI ++ KC ++ AR +F + + + +++A+I G + +G+ + A+ F
Sbjct: 234 GFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYF 293
Query: 70 NKMIEIGIKPNGVTFIGL---------LH-ACGHMGW-----------VDEGRRFFYSMT 108
+++ G + + T +GL LH AC G+ V YS
Sbjct: 294 RELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRL 353
Query: 109 TEYGIIPQ---------IEHYGCMVDLLSRAGFLQEAYEFIRNM---PIKPNGVVWGALL 156
E + Q + + M+ +++G + A + M PN V ++L
Sbjct: 354 NEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSIL 413
Query: 157 GGCRVHKNIDLAEEASRQLDQLDPLNNGY-HVVLSNIYAEAERWEDVARVRKLMRNLGVK 215
C + + + + + N Y L ++YA+ + +++ L K
Sbjct: 414 SACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSE---K 470
Query: 216 KTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDI 272
T W+++ +H + GDE KL + M G+ P +SV L +
Sbjct: 471 NTVTWNTMIFGYGLHGY--GDEA-----------LKLFNEMLHLGFQP-SSVTFLSV 513
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 171/351 (48%), Positives = 252/351 (71%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y + N+ V N LI+MY +CG ++ A+ VF EM++R V T++ MI GL+++G+
Sbjct: 300 VHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGK 359
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+++A+ F MI ++P VTF+G+L+AC H G VD G + F+SMT +YG+ PQIEHYG
Sbjct: 360 SRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYG 419
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL R G L+EAY+ IR M + P+ ++ G LL C++HKN++L E+ ++ L+
Sbjct: 420 CMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQA 479
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +V+LS++YA + +W++ A+VR M+ G++K PG SSI V+ +HEF+ GD HP+
Sbjct: 480 DSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPR 539
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E+I++ E+L ++L+GY P VVL DIE+ EKE L HSE+LA+ +GL++T P T
Sbjct: 540 KERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGLISTEPCT 599
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR+MKNLRVC DCH+A KLI++I R++VVRDRNRFH F+ G+CSCGDYW
Sbjct: 600 VIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 650
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 35/191 (18%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFT------------- 48
VH + + G N V ++++Y KCG L ARRVF EM E V +
Sbjct: 169 VHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLV 228
Query: 49 -----------------WSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHAC 91
W+AMI G + + AL +F M ++PN T + +L AC
Sbjct: 229 EEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSAC 288
Query: 92 GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP----IKP 147
+G ++ G R+ +S ++ I + ++++ SR G + EA M I
Sbjct: 289 SQLGALEIG-RWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITY 347
Query: 148 NGVVWGALLGG 158
N ++ G + G
Sbjct: 348 NTMISGLSMNG 358
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 27 KCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIG 86
KC ++ A R+F V+ ++A+I G G +A+ +++M+ I P+
Sbjct: 93 KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMAS 152
Query: 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP 144
+L ACG + EGR +S + G+ +++L + G L +A MP
Sbjct: 153 ILKACGSQLALREGRE-VHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMP 209
>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
Length = 569
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 173/352 (49%), Positives = 239/352 (67%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH+ +S + +LI MY KCG LE ++F+++ R V TW+AMI G A HG
Sbjct: 218 QVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHG 277
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ K+AL F++MIE G+KP+ +TF+ +L AC H G+ D G ++F+SM +YG++ + +HY
Sbjct: 278 EGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHY 337
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG L EA + I MP KP+ V+G LLG CR+HKN ++AE AS++L LDP
Sbjct: 338 TCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNTEMAEFASQKLLNLDP 397
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +V L+N+YA +RW+ VARVRK M++ V KTPG+S I V + H+F +GD+ HP
Sbjct: 398 ASATGYVQLANVYAATKRWDHVARVRKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKFHP 457
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ I ++L MKL GY+P+ L D+ E++KE+ L HSEKLA+ +GL+ PPG
Sbjct: 458 ELASIHGKLKELEKKMKLAGYVPDLEFALHDVGEEQKEQLLLWHSEKLAIAYGLIKLPPG 517
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPIR+ KNLRVC DCH A K IS+I REI+VRD RFH F+ G CSC DYW
Sbjct: 518 TPIRVFKNLRVCGDCHRAIKYISQIERREIIVRDTTRFHHFKDGHCSCADYW 569
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+++ +I Y+K G + A R+F +M E+ + TW+AMI G + +A++ + F M
Sbjct: 129 KSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTM 188
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ GI+PN T L C + + GR+ + + + + ++ + + G
Sbjct: 189 VGFGIQPNSSTLSSALLGCSELSALQLGRQ-VHQLVCKSPLCDDTTAGTSLISMYCKCGV 247
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
L++ ++ +P + + V W A++ G H
Sbjct: 248 LEDGWKLFVQVP-RRDVVTWNAMISGYAQH 276
Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 10/140 (7%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NT++ YV+ +E A+ F +M + +W+ MI G A + Q +A F M
Sbjct: 42 NTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPT---- 97
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
N VT+ ++ G +D + F E + + M+ + G + A
Sbjct: 98 KNVVTWNAMISGYVECGDLDSALKLF-----EKAPFKSVVAWTAMITGYMKLGRIGLAER 152
Query: 139 FIRNMPIKPNGVVWGALLGG 158
MP K N V W A++ G
Sbjct: 153 LFEKMPEK-NLVTWNAMIAG 171
>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 905
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 167/353 (47%), Positives = 233/353 (66%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SG + ++ + N LI+MY++CG L+ AR VF ++ R V +W+AMI G A G
Sbjct: 553 QIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQG 612
Query: 61 QAKEALTSFNKMIEIGIKP-NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+ +A+ F +M G +P +G TF +L AC H G V EG + F SM +EYG++P IEH
Sbjct: 613 EDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEH 672
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YGC+V LL RA QEA I MP P+ VW LLG CR+H NI LAE A+ +L+
Sbjct: 673 YGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLN 732
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
N +++LSN+YA A RW+DVA++R++M G++K PG S I VD ++HEF+A D +H
Sbjct: 733 ARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSH 792
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ +I+ ++L M+ GY P+T VL D+ + +E L HSE+LA+ +GL+ TPP
Sbjct: 793 PETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPP 852
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GTPIRI KNLR+C DCH A K IS++V REI+ RD NRFH F+ G CSC DYW
Sbjct: 853 GTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 905
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 101/201 (50%), Gaps = 3/201 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++G++R+ RV N+L+ MY KCG L AR+VF + R V +++ M+ A
Sbjct: 149 KIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKA 208
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
KE L F +M GI P+ VT+I LL A +DEG+R + +T E G+ I
Sbjct: 209 YVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKR-IHKLTVEEGLNSDIRVG 267
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH-KNIDLAEEASRQLDQLD 179
+V + R G + A + + + + + VV+ AL+ H N++ E+ R
Sbjct: 268 TALVTMCVRCGDVDSAKQAFKGIADR-DVVVYNALIAALAQHGHNVEAFEQYYRMRSDGV 326
Query: 180 PLNNGYHVVLSNIYAEAERWE 200
LN ++ + N + ++ E
Sbjct: 327 ALNRTTYLSILNACSTSKALE 347
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 84/158 (53%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H+ + + G +IRV L+ M V+CG ++ A++ F + +R V ++A+I LA HG
Sbjct: 250 RIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHG 309
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA + +M G+ N T++ +L+AC ++ G + +S +E G ++
Sbjct: 310 HNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIG 368
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + +R G L +A E MP K + + W A++ G
Sbjct: 369 NALISMYARCGDLPKARELFYTMP-KRDLISWNAIIAG 405
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 95/191 (49%), Gaps = 4/191 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + ++ G ++++ N LI MY +CG L AR +F M +R + +W+A+I G A
Sbjct: 352 IHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARRED 411
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ + +M G+KP VTF+ LL AC + +G + + GI
Sbjct: 412 RGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADG-KMIHEDILRSGIKSNGHLAN 470
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL--DQLD 179
++++ R G L EA + + + W +++ G H + + A + +++ ++L+
Sbjct: 471 ALMNMYRRCGSLMEAQNVFEGTQAR-DVISWNSMIAGHAQHGSYETAYKLFQEMQNEELE 529
Query: 180 PLNNGYHVVLS 190
P N + VLS
Sbjct: 530 PDNITFASVLS 540
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 85/158 (53%), Gaps = 2/158 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+HE +SG + N + N L++MY +CG L A+ VF + R V +W++MI G A HG
Sbjct: 453 IHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGS 512
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ A F +M ++P+ +TF +L C + ++ G++ + TE G+ +
Sbjct: 513 YETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQ-IHGRITESGLQLDVNLGN 571
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
++++ R G LQ+A ++ + + + W A++GGC
Sbjct: 572 ALINMYIRCGSLQDARNVFHSLQHR-DVMSWTAMIGGC 608
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 6/159 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H ++G +I + N LI+MYVKC + A +VF EM R V +W+++I A G
Sbjct: 48 RIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQG 107
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE-YGIIPQIEH 119
K+A F +M G PN +T+I +L AC ++ G++ + Y P++++
Sbjct: 108 FKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQN 167
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV-WGALLG 157
++ + + G L A + I P VV + +LG
Sbjct: 168 --SLLSMYGKCGDLPRARQVFAG--ISPRDVVSYNTMLG 202
>gi|302793743|ref|XP_002978636.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
gi|300153445|gb|EFJ20083.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
Length = 438
Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 177/353 (50%), Positives = 228/353 (64%), Gaps = 2/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH + G + V ++DMY KCGCL+ A F +E +W+AM+ A HG
Sbjct: 87 RVHAIARDHGVDSEVAVATAIVDMYSKCGCLDEAVEAFARIERHDTVSWTAMLAAFAQHG 146
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
AL +F +M E G KPN VTF+ LL AC H G V+EGR++F MT YGI P +HY
Sbjct: 147 HIDRALATFQRMQEQGHKPNYVTFVHLLSACSHKGLVEEGRKYFDLMTARYGIAPDAQHY 206
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE-ASRQLDQLD 179
CMVDLL RAG+L EA +F+ MP P+ V +LL CR +K++D E A R L+
Sbjct: 207 ACMVDLLGRAGYLDEAEDFLNRMPGAPHAAVLKSLLSACRSYKDVDRGERIAKRMLESFW 266
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
+ Y VVL++IY A +WE+ AR+R LM GV+K PG S+I V+G V EFVAGD +H
Sbjct: 267 DESMPY-VVLASIYRAAGKWEEAARIRSLMVERGVRKDPGRSAIEVEGRVFEFVAGDMSH 325
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
Q I ++L MK GY+P+TS+VL D+ E+EKE+ L HSEKLA+ FGL+NTP
Sbjct: 326 VQMNPIRAKLQELSSAMKEAGYVPDTSLVLHDVAEEEKEQVLLWHSEKLAVAFGLLNTPA 385
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G+PIR++KNLRVC+DCH A KLIS I R IV RD +RFH F+ G CSCGDYW
Sbjct: 386 GSPIRVIKNLRVCKDCHDAAKLISAIEQRRIVFRDLSRFHHFENGVCSCGDYW 438
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 81/149 (54%), Gaps = 2/149 (1%)
Query: 20 TLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP 79
T++ + K G L A R+F + +F W+AMI HG +++A+ F++++ I+P
Sbjct: 5 TVLSAFAKVGNLHLAARIFARTDRSYIFPWNAMIAAYVQHGDSRQAIRLFDELLARRIEP 64
Query: 80 NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEF 139
N VT + +L AC + + +G+R +++ ++G+ ++ +VD+ S+ G L EA E
Sbjct: 65 NSVTLMEVLDACASLAALRDGKR-VHAIARDHGVDSEVAVATAIVDMYSKCGCLDEAVEA 123
Query: 140 IRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
+ + + V W A+L H +ID A
Sbjct: 124 FARIE-RHDTVSWTAMLAAFAQHGHIDRA 151
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 172/354 (48%), Positives = 243/354 (68%), Gaps = 3/354 (0%)
Query: 2 VHEYSNQSGF--RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
+ + + +SGF N+ V + LIDMY KCG + A +VF M+ER VF++S+MI G A+H
Sbjct: 297 IRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMH 356
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G+A AL F+ M++ I+PN VTFIG+L AC H G V++GR+ F M +G+ P +H
Sbjct: 357 GRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDH 416
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CMVDLL RAG L+EA + ++ MP++PNG VWGALLG CR+H N D+A+ A+ +L +L+
Sbjct: 417 YACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLE 476
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSIT-VDGVVHEFVAGDET 238
P G +++LSNIYA A RWE+V+++RK++R G KK PG S +G +H+F AGD T
Sbjct: 477 PNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTT 536
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
HP++ +I Q ++L++ ++ GY PN D+ + EKE+ L HSEKLAL +GL+ T
Sbjct: 537 HPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTE 596
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G I+IMKN+R+CEDCH SEI REI+VRD RFH F G+CSCG++W
Sbjct: 597 AGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 123/293 (41%), Gaps = 47/293 (16%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWS------------------- 50
GF ++ V N++ID+YVKCG L AR+VF EM ER V +W+
Sbjct: 173 GFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLF 232
Query: 51 ------------AMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVD 98
AM+ G A +G+ KEAL F KM ++G++ + VT G++ AC +G V
Sbjct: 233 DDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVK 292
Query: 99 EGRRFFYSMTTEYGIIPQ--IEHYGCMVDLLSRAGFLQEAYEFIRNMP----IKPNGVVW 152
+ + G P + ++D+ S+ G EAY+ M + ++
Sbjct: 293 HA-NWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMIL 351
Query: 153 GALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212
G + G R H + L + + ++ P + +LS + K+ +
Sbjct: 352 GYAMHG-RAHSALQLFHDMLKT--EIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFF 408
Query: 213 GVKKTPGWSSITVD-----GVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKG 260
GV +P + VD G + E + +T P E +W LL ++ G
Sbjct: 409 GVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPM-EPNGGVWGALLGACRIHG 460
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 10/231 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARR--VFIEMEERTVFTWSAMIQGLAI 58
+VH + ++G + V LI M K G+ VF ++ F W+AMI+G A+
Sbjct: 60 QVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYAL 119
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
G E+ + +M G+ P TF L ACG +D G++ G +
Sbjct: 120 QGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLY 179
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
M+DL + GFL A + M + + V W L+ + ++ E AS D L
Sbjct: 180 VGNSMIDLYVKCGFLGCARKVFDEMSER-DVVSWTELIVAYAKYGDM---ESASGLFDDL 235
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVV 229
+ + YA+ R ++ + M+++G++ +T+ GV+
Sbjct: 236 PLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMET----DEVTLAGVI 282
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 172/354 (48%), Positives = 243/354 (68%), Gaps = 3/354 (0%)
Query: 2 VHEYSNQSGF--RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
+ + + +SGF N+ V + LIDMY KCG + A +VF M+ER VF++S+MI G A+H
Sbjct: 297 IRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMH 356
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G+A AL F+ M++ I+PN VTFIG+L AC H G V++GR+ F M +G+ P +H
Sbjct: 357 GRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDH 416
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CMVDLL RAG L+EA + ++ MP++PNG VWGALLG CR+H N D+A+ A+ +L +L+
Sbjct: 417 YACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLE 476
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSIT-VDGVVHEFVAGDET 238
P G +++LSNIYA A RWE+V+++RK++R G KK PG S +G +H+F AGD T
Sbjct: 477 PNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTT 536
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
HP++ +I Q ++L++ ++ GY PN D+ + EKE+ L HSEKLAL +GL+ T
Sbjct: 537 HPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTE 596
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G I+IMKN+R+CEDCH SEI REI+VRD RFH F G+CSCG++W
Sbjct: 597 AGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 123/293 (41%), Gaps = 47/293 (16%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWS------------------- 50
GF ++ V N++ID+YVKCG L AR+VF EM ER V +W+
Sbjct: 173 GFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLF 232
Query: 51 ------------AMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVD 98
AM+ G A +G+ KEAL F KM ++G++ + VT G++ AC +G V
Sbjct: 233 DDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVK 292
Query: 99 EGRRFFYSMTTEYGIIPQ--IEHYGCMVDLLSRAGFLQEAYEFIRNMP----IKPNGVVW 152
+ + G P + ++D+ S+ G EAY+ M + ++
Sbjct: 293 HA-NWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMIL 351
Query: 153 GALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212
G + G R H + L + + ++ P + +LS + K+ +
Sbjct: 352 GYAMHG-RAHSALQLFHDMLKT--EIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFF 408
Query: 213 GVKKTPGWSSITVD-----GVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKG 260
GV +P + VD G + E + +T P E +W LL ++ G
Sbjct: 409 GVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPM-EPNGGVWGALLGACRIHG 460
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 10/231 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARR--VFIEMEERTVFTWSAMIQGLAI 58
+VH + ++G + V LI M K G+ VF ++ F W+AMI+G A+
Sbjct: 60 QVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYAL 119
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
G E+ + +M G+ P TF L ACG +D G++ G +
Sbjct: 120 QGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLY 179
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
M+DL + GFL A + M + + V W L+ + ++ E AS D L
Sbjct: 180 VGNSMIDLYVKCGFLGCARKVFDEMSER-DVVSWTELIVAYAKYGDM---ESASGLFDDL 235
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVV 229
+ + YA+ R ++ + M+++G++ +T+ GV+
Sbjct: 236 PSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMET----DEVTLAGVI 282
>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 697
Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 169/350 (48%), Positives = 241/350 (68%), Gaps = 1/350 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + +SG R + V NT++DMY K G + AR+VF ++++ V TW++M+ A +G
Sbjct: 288 VHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGL 347
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA+T F +M + G+ N +TF+ +L AC H G V EG+++F M EY + P+I+HY
Sbjct: 348 GREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYF-DMMKEYNLEPEIDHYV 406
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+VDLL RAG L +A FI MP+KP VWGALLG CR+HKN + + A+ + +LDP
Sbjct: 407 TVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPD 466
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G V+L NIYA +W+ ARVRK+M+ GVKK P S + ++ VH FVA D+THP+
Sbjct: 467 DTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPR 526
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+E+I++ WE++ ++ GY+PNT VLL ++E+E++ L HSEK+AL F L+N P G
Sbjct: 527 SEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGA 586
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDY 351
IRIMKN+R+C DCH+AF+ IS++ REIVVRD NRFH F +GSCSCGDY
Sbjct: 587 TIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDY 636
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + S F ++ + N+LI +Y KCG + ARRVF M R + +W+++I G A +
Sbjct: 86 IHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDM 145
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL M+ KPNG TF LL A G G + +++T +Y +
Sbjct: 146 PDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ-IHALTVKYDWHDDVYVGS 204
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ +R G + A + K NGV W AL+ G
Sbjct: 205 ALLDMYARCGRMDMAIAVFDQLESK-NGVSWNALIAG 240
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + + ++ V + L+DMY +CG ++ A VF ++E + +W+A+I G A G
Sbjct: 186 QIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKG 245
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ L F +M G + T+ + A +G +++G ++ ++ + G
Sbjct: 246 DGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQG-KWVHAHMIKSGERLSAFVG 304
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
++D+ +++G + +A + + K + V W ++L
Sbjct: 305 NTILDMYAKSGSMIDARKVFDRVD-KKDVVTWNSML 339
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 175/351 (49%), Positives = 228/351 (64%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + G + V +LI MY KCG + AR VF ++ R W+AM+ G HG
Sbjct: 540 VHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGI 599
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ F +M++ + PN +TF ++ ACG G V EGR F M ++ + P +HYG
Sbjct: 600 GPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYG 659
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG LQEA EFI+ MP +P+ VW ALLG C+ H N+ LAE A+ + +L+P
Sbjct: 660 CMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPS 719
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N +V LSNIYA+A RW+D +VRK+M + G+KK G SSI +DG +H FVA D HP+
Sbjct: 720 NASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAEDCAHPE 779
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ I E L MK GY P+ VL D++E +KE+ L HSEKLA+ +GL+ TPPGT
Sbjct: 780 IDSIHAELEMLTKEMKEAGYTPDMRFVLHDVDEVQKERALCHHSEKLAIAYGLLKTPPGT 839
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRIMKNLRVC DCH A K IS+I REIV RD NRFH F+ G+CSCGD+W
Sbjct: 840 PIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFKNGTCSCGDFW 890
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 94/399 (23%), Positives = 165/399 (41%), Gaps = 81/399 (20%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H SG ++ V LI MY KCG + A +F +M+ER V +W+A+IQ A H +
Sbjct: 201 IHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRK 260
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA + KM++ GI PN VTF+ LL++C ++ GRR +S +E G+ +
Sbjct: 261 LNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRR-IHSHISERGLETDVVVAN 319
Query: 122 CMV----------------DLLSR----------AGFLQEAY-------------EFIRN 142
++ D +S+ AG+ Q Y E +R
Sbjct: 320 ALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRR 379
Query: 143 MPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD-PLNNGYHVVLSNIYAEAERWED 201
+ PN V + ++L C VH ++ + ++ ++ + + N+YA+ +
Sbjct: 380 EGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYE 439
Query: 202 VARVRKLMRNLGVKKTPGWSSI-----------TVDGVVHE-----------FVAGDETH 239
+V M N K W+S+ + + V E +AG
Sbjct: 440 AEQVFSKMEN---KNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQS 496
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIE------EKEKEKFLYRHSEKLALTFG 293
K+F+ LL MK++G+ P+ ++ +E E+ K ++ + KL L
Sbjct: 497 GDIAKVFE----LLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLE-- 550
Query: 294 LMNTPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVV 332
+T T + M + C + A + +I NR+ V
Sbjct: 551 -SDTVVATSLIGMYS--KCGEVTEARTVFDKISNRDTVA 586
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 87/161 (54%), Gaps = 7/161 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H + ++ G ++ V N LI MY KC C++ AR F M +R V +WSAMI G A G
Sbjct: 301 RIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSG 360
Query: 61 -QAKEALTSFNKMIEI----GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP 115
Q KE+L +++E G+ PN VTF+ +L AC G +++GR+ ++ ++ G
Sbjct: 361 YQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQ-IHAEISKVGFES 419
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
+ ++ ++ G + EA + M K N V W +LL
Sbjct: 420 DRSLQTAIFNMYAKCGSIYEAEQVFSKMENK-NVVAWASLL 459
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 89/176 (50%), Gaps = 2/176 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+ ++ G +I + N+LI+ Y K G + +VF M R V TWS+MI A +
Sbjct: 100 VHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNH 159
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+A +F +M + I+PN +TF+ +L AC + +++ R +++ G+ +
Sbjct: 160 PAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKARE-IHTVVKASGMETDVAVAT 218
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
++ + S+ G + A E + M + N V W A++ H+ ++ A E ++ Q
Sbjct: 219 ALITMYSKCGEISLACEIFQKMK-ERNVVSWTAIIQANAQHRKLNEAFELYEKMLQ 273
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+N+ +L+ MY+KCG L A +VF EM R V +W+ MI G A G + + M
Sbjct: 450 KNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSM 509
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
G +P+ VT I +L ACG + ++ G + ++ + G+ ++ + S+ G
Sbjct: 510 KVEGFQPDRVTIISILEACGALSALERG-KLVHAEAVKLGLESDTVVATSLIGMYSKCGE 568
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ EA + + + V W A+L G H
Sbjct: 569 VTEARTVFDKISNR-DTVAWNAMLAGYGQH 597
>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 171/351 (48%), Positives = 252/351 (71%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y + N+ V N LI+MY +CG ++ A+ VF EM++R V T++ MI GL+++G+
Sbjct: 257 VHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGK 316
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+++A+ F MI ++P VTF+G+L+AC H G VD G + F+SMT +YG+ PQIEHYG
Sbjct: 317 SRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYG 376
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL R G L+EAY+ IR M + P+ ++ G LL C++HKN++L E+ ++ L+
Sbjct: 377 CMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQA 436
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +V+LS++YA + +W++ A+VR M+ G++K PG SSI V+ +HEF+ GD HP+
Sbjct: 437 DSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPR 496
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E+I++ E+L ++L+GY P VVL DIE+ EKE L HSE+LA+ +GL++T P T
Sbjct: 497 KERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGLISTEPCT 556
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR+MKNLRVC DCH+A KLI++I R++VVRDRNRFH F+ G+CSCGDYW
Sbjct: 557 VIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 607
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 9/165 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTV----FTWSAMIQGLA 57
VH + + G N V ++++Y KCG L ARRVF EM E V W+AMI G
Sbjct: 152 VHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFV 211
Query: 58 IHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
+ + AL +F M ++PN T + +L AC +G ++ G R+ +S ++ I +
Sbjct: 212 RNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIG-RWVHSYMRKFEIELNL 270
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMP----IKPNGVVWGALLGG 158
++++ SR G + EA M I N ++ G + G
Sbjct: 271 FVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNG 315
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 4/165 (2%)
Query: 27 KCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIG 86
KC ++ A R+F V+ ++A+I G G +A+ +++M+ I P+
Sbjct: 76 KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMAS 135
Query: 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP-- 144
+L ACG + EGR +S + G+ +++L + G L +A MP
Sbjct: 136 ILKACGSQLALREGRE-VHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPED 194
Query: 145 -IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVV 188
+ + V W A++ G ++ ++ A EA R + + N + +V
Sbjct: 195 VVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIV 239
>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 642
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 167/354 (47%), Positives = 235/354 (66%), Gaps = 2/354 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME--ERTVFTWSAMIQGLAI 58
++HE + + G N V L MY KCG L AR F ++ E+ + W+ MI A
Sbjct: 289 QIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYAS 348
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+G +A+++F +MI+ GI+P+ +TF GLL C H G VD G ++F M+T Y I P++E
Sbjct: 349 YGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVE 408
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
HY C+ DLL RAG L EA + + MP+ +WG+LL CR H+N+++AE A+R+L L
Sbjct: 409 HYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVL 468
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
+P N G +V+LSN+YAEA RW++V ++R ++++ G KK+PG S I ++G H F+ GD +
Sbjct: 469 EPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTS 528
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
HPQ ++I+ E L + MK GY P+TS VL DI E+EKE L HSEKLA+ FG++NTP
Sbjct: 529 HPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTP 588
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T +R+ KNLR+C DCH A ISEI RE++VRD NRFH F+ G CSCGDYW
Sbjct: 589 AETVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 642
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 16/123 (13%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ N L+ Y K GC++ A +F M R + +W+ MI G + G A++AL+ F++M
Sbjct: 198 RDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEM 257
Query: 73 I--EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
+ + G++PN VT + +L AC + ++ GR QI C + L S A
Sbjct: 258 VKEDSGVRPNWVTIMSVLPACAQLSTLERGR--------------QIHELACRMGLNSNA 303
Query: 131 GFL 133
L
Sbjct: 304 SVL 306
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 172/351 (49%), Positives = 241/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H Y ++ R + + LIDMY KCG + A VF M+E+ V+TWS+ I GLA++G
Sbjct: 265 AHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGA 324
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++ L F+ M + ++PN +TF+ +L C +G V+EGR+ F SM+ YGI P++EHYG
Sbjct: 325 GEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHYG 384
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL RAG L EA FI +MP++P+ WGALL C++++N+++ E ASR++ +L+
Sbjct: 385 CMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGELASRKIVELEAK 444
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +V+LSNIYA+++ W+ V+ VR+ M GV+K PG S I V G VHEF GD++HP+
Sbjct: 445 NHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIEVGGEVHEFFVGDKSHPR 504
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I M ++ +KL GY+ NT+ V DIEE+EKE L HSEK+A+ FGL++ P
Sbjct: 505 YAEIQVMLGEISRRLKLSGYVANTNPVFFDIEEEEKEDALCMHSEKIAIAFGLISLSPDV 564
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVC DCH A K+IS+ NREIVVRDRNRFH F+ G CSC YW
Sbjct: 565 PIRIVKNLRVCWDCHDATKMISKAFNREIVVRDRNRFHHFRDGECSCKGYW 615
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 17/150 (11%)
Query: 17 VCNT-LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEI 75
VC T ++ K G + AR++F +M + W+AMI G GQ++EAL+ FN M
Sbjct: 178 VCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQRE 237
Query: 76 GIKPNGVTFIGLLHACGHMGWVDEGR-------RFFYSMTTEYGIIPQIEHYGCMVDLLS 128
G+K N V+ + +L AC H+G +D+GR R MT G ++D+ +
Sbjct: 238 GVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGT--------ALIDMYA 289
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ G + +A E M K N W + +GG
Sbjct: 290 KCGNMNKAMEVFWGMKEK-NVYTWSSAIGG 318
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 172/352 (48%), Positives = 242/352 (68%), Gaps = 6/352 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+ +N S R +LIDMY KCG +E A +VF M +++ W+AMI G A+HG
Sbjct: 325 RLKGVTNASSLR------TSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHG 378
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A A F++M + IKP+ +TF+GLL AC H G +D GR F SMT Y I P++EHY
Sbjct: 379 RANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHY 438
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCM+DLL +G +EA E I M ++P+GV+W +LL C++H N++L E+ ++ L +++P
Sbjct: 439 GCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEP 498
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +V+LSNIYA A RW +VAR+R L+ + G+KK PG SSI +D VVHEF+ GD+ HP
Sbjct: 499 NNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHP 558
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ M E++ ++ G++P+TS VL ++EE+ KE L HSEKLA+ FGL++T P
Sbjct: 559 RNREIYGMLEEMEVLLQEAGFVPDTSEVLQEMEEEFKEGALRHHSEKLAIAFGLISTKPE 618
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T + I+KNLRVC +CH A KLIS+I REI+ RDR RFH F+ G CSC DYW
Sbjct: 619 TKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 670
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 2/169 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + GF N+++ N LID Y KCG +E A +F+ + + V +W+ +I G
Sbjct: 216 QVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLN 275
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY-GIIPQIEH 119
KEAL F +M+ G PN VT + +LHAC H+G +D GR + G+
Sbjct: 276 LYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSL 335
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++D+ S+ G ++ A++ +M + + W A++ G +H + A
Sbjct: 336 RTSLIDMYSKCGDIEAAHQVFNSM-LHKSLPAWNAMIFGFAMHGRANAA 383
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 82/159 (51%), Gaps = 5/159 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ L+ Y G +E AR +F E+ + V +W+AMI G G KEAL F +M
Sbjct: 127 RDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEM 186
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
++ ++P+ T + ++ A G ++ GR+ +S ++G ++ ++D S+ G
Sbjct: 187 MKTNVRPDESTMVTVISASARSGSIELGRQ-VHSWIADHGFGSNLKIVNALIDFYSKCGE 245
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
++ A + K + + W L+GG + +++L +EA
Sbjct: 246 METACGLFLGLSYK-DVISWNILIGG---YTHLNLYKEA 280
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 61/158 (38%), Gaps = 31/158 (19%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90
L A VF ++E + W+ M +G A+ AL + MI +G+ PN TF LL +
Sbjct: 13 LPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKS 72
Query: 91 CGHMGWVDEGRRF------------FYSMTTEYGIIPQIEH------------------Y 120
C + EG + Y T+ + Q E Y
Sbjct: 73 CAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSY 132
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V + G+++ A +P+K + V W A++ G
Sbjct: 133 TALVTGYASRGYIESARNMFDEIPVK-DVVSWNAMISG 169
>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Cucumis sativus]
Length = 679
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 167/354 (47%), Positives = 235/354 (66%), Gaps = 2/354 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME--ERTVFTWSAMIQGLAI 58
++HE + + G N V L MY KCG L AR F ++ E+ + W+ MI A
Sbjct: 326 QIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYAS 385
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+G +A+++F +MI+ GI+P+ +TF GLL C H G VD G ++F M+T Y I P++E
Sbjct: 386 YGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVE 445
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
HY C+ DLL RAG L EA + + MP+ +WG+LL CR H+N+++AE A+R+L L
Sbjct: 446 HYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVL 505
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
+P N G +V+LSN+YAEA RW++V ++R ++++ G KK+PG S I ++G H F+ GD +
Sbjct: 506 EPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTS 565
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
HPQ ++I+ E L + MK GY P+TS VL DI E+EKE L HSEKLA+ FG++NTP
Sbjct: 566 HPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTP 625
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T +R+ KNLR+C DCH A ISEI RE++VRD NRFH F+ G CSCGDYW
Sbjct: 626 AETVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 679
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 16/123 (13%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ N L+ Y K GC++ A +F M R + +W+ MI G + G A++AL+ F++M
Sbjct: 235 RDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEM 294
Query: 73 I--EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
+ + G++PN VT + +L AC + ++ GR QI C + L S A
Sbjct: 295 VKEDSGVRPNWVTIMSVLPACAQLSTLERGR--------------QIHELACRMGLNSNA 340
Query: 131 GFL 133
L
Sbjct: 341 SVL 343
>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 792
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 171/351 (48%), Positives = 225/351 (64%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+ + F +I V LI MY KCG + ARR+F M ++ TW+ MI G +HG
Sbjct: 442 VHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGH 501
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EALT F++M+ GI P VTF+ +L+AC H G V EG F SM YG P ++HY
Sbjct: 502 GQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYA 561
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VD+L RAG LQ A +FI MPI+P VW LLG CR+HK+ +LA S +L +LDP
Sbjct: 562 CVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFELDPD 621
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GYHV+LSNI++ + A VR+ + + K PG++ I + H F +GD++HPQ
Sbjct: 622 NVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQ 681
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ I + EKL M+ GY P T + L D+EE+E+E + HSE+LA+ FGL+ T PGT
Sbjct: 682 VKAIHEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGT 741
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC DCH A KLIS+I R IVVRD NRFH F+ G CSCGDYW
Sbjct: 742 EIRIIKNLRVCLDCHTATKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 2/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H YS +S F + V L +Y K +E AR++F E E+++ +W+AMI G +G
Sbjct: 341 IHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGL 400
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++A++ F +M PN VT +L AC +G + G ++ + + I
Sbjct: 401 TEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLG-KWVHDLVRSTDFESSIYVST 459
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++ + ++ G + EA MP K N V W ++ G +H
Sbjct: 460 ALIGMYAKCGSIAEARRLFDFMP-KKNEVTWNTMISGYGLH 499
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/286 (18%), Positives = 114/286 (39%), Gaps = 43/286 (15%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++G + V I +Y KCG ++ A +F E + ++AMI G +G
Sbjct: 242 QIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNG 301
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM-------GWVDEGRRFFYS-----MT 108
+ + +L+ F +++ G K T + L+ GH+ G+ + ++ +T
Sbjct: 302 ETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALT 361
Query: 109 TEYGIIPQIE---------------HYGCMVDLLSRAGFLQEAYEFIRNMP---IKPNGV 150
T Y + +IE + M+ ++ G ++A R M PN V
Sbjct: 362 TVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPV 421
Query: 151 VWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGY-HVVLSNIYAEAERWEDVARVRKLM 209
+L C + L + + D ++ Y L +YA + +A R+L
Sbjct: 422 TITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYA---KCGSIAEARRLF 478
Query: 210 RNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDG 255
+ K W+++ ++G H ++ ++ ++L+
Sbjct: 479 DFMPKKNEVTWNTM---------ISGYGLHGHGQEALTIFSEMLNS 515
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 77/175 (44%), Gaps = 3/175 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G + + + ++ MY K +E AR+VF M E+ W+ MI G +
Sbjct: 141 IHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEM 200
Query: 62 AKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
E++ F +I E + + T + +L A + + G + +S+ T+ G
Sbjct: 201 YVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQ-IHSLATKTGCYSHDYVL 259
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
+ L S+ G ++ A R +P+ V + A++ G + +L+ ++L
Sbjct: 260 TGFISLYSKCGKIKMASTLFREFR-RPDIVAYNAMIHGYTSNGETELSLSLFKEL 313
>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 882
Score = 361 bits (926), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 229/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + F ++ N L+ Y KCG +E A F + ER + +WSAMI GLA HG
Sbjct: 531 QVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHG 590
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
K AL F++M++ G+ PN +T +L AC H G VD+ +++F SM +GI EHY
Sbjct: 591 HGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHY 650
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+D+L RAG L++A E + NMP + N VWGALLG RVH++ +L A+ +L L+P
Sbjct: 651 ACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEP 710
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+G HV+L+N YA A W+++A+VRKLM++ VKK P S + + VH F+ GD++HP
Sbjct: 711 EKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGDKSHP 770
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
I+ +L D M GY+PN V L D++ EKE L HSE+LA+ F L++TP G
Sbjct: 771 MTRDIYGKLAELGDLMNKAGYVPNVEVDLHDVDRSEKELLLSHHSERLAVAFALISTPSG 830
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLR+C DCH AFK IS+IV+REI++RD NRFH F G+CSCGDYW
Sbjct: 831 APIRVKKNLRICRDCHVAFKYISKIVSREIIIRDINRFHHFTNGTCSCGDYW 882
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 2/159 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH ++G+ +++ N L+DMY K G +E A VF +M V +W+A I G HG
Sbjct: 226 QVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHG 285
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
AL +M G+ PN T +L AC G + GR+ M +
Sbjct: 286 HDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAV 345
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
G +VD+ ++ GFL +A + MP + + ++W AL+ GC
Sbjct: 346 G-LVDMYAKHGFLDDARKVFDFMP-RRDLILWNALISGC 382
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM----EERTVFTWSAMIQGL 56
+VH + + ++ V N L+ +Y G ++ ARR+F E ER +W+ MI
Sbjct: 121 QVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAY 180
Query: 57 AIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ 116
+ Q+ +A+ F +M+ G +PN F +++AC ++ GR+ + G
Sbjct: 181 VKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQ-VHGAVVRTGYEKD 239
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ +VD+ S+ G ++ A MP + V W A + GC H
Sbjct: 240 VFTANALVDMYSKLGDIEMAATVFEKMP-AADVVSWNAFISGCVTH 284
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 96/199 (48%), Gaps = 14/199 (7%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + G + V N LID Y KCG L+ A +VF E + + + M+ L+
Sbjct: 430 QVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCD 489
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++A+ F +M+ G++P+ LL+AC + ++G++ ++ + +
Sbjct: 490 HGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQ-VHAHLIKRQFTSDVFAG 548
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV-WGALLGGCRVH----KNIDLAEEASRQL 175
+V ++ G +++A +P + G+V W A++GG H + +DL R L
Sbjct: 549 NALVYAYAKCGSIEDADMAFSGLPER--GIVSWSAMIGGLAQHGHGKRALDLFH---RML 603
Query: 176 DQLDPLNNGYHVVLSNIYA 194
D+ N H+ L+++ +
Sbjct: 604 DEGVAPN---HITLTSVLS 619
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGI 77
L+DMY K G L+ AR+VF M R + W+A+I G + G+ E L+ F++M + G+
Sbjct: 347 LVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGL 403
>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
Length = 886
Score = 361 bits (926), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 236/352 (67%), Gaps = 5/352 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R HEY F V N LIDMY KCG ++ AR VF M +R +W++M+ G +HG
Sbjct: 540 RHHEYEPSVYF-----VANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHG 594
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ KEAL F+KM + G P+ ++F+ LL+AC H G VD+G +F M +Y ++ EHY
Sbjct: 595 RGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHY 654
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C++DLL+R G L +A++ I+ MP++P+ V+W ALL CRVH N++LAE A +L +
Sbjct: 655 ACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKA 714
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G + ++SNIYA A RW+DVAR+R+LM+ G+KK PG S + F GD +HP
Sbjct: 715 ENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHP 774
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ + E+L+ +K+ GY+P T+ L D++++EK L HSEKLAL +GL+ T PG
Sbjct: 775 LSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLSEHSEKLALAYGLLTTSPG 834
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH+AF IS+IV+ EI+VRD +RFH F+ GSCSCG YW
Sbjct: 835 CPIRITKNLRVCGDCHSAFTYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 6/153 (3%)
Query: 15 IRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+ V N LIDMY KC + AR +F I ER V TW+ MI G A +G + +AL F++M
Sbjct: 442 LMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEM 501
Query: 73 IE--IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG-CMVDLLSR 129
I + PN T +L AC H+ + G++ +T + P + C++D+ S+
Sbjct: 502 ISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSK 561
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
G + A +MP K N V W +++ G +H
Sbjct: 562 CGDVDTARNVFDSMP-KRNEVSWTSMMSGYGMH 593
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 87/204 (42%), Gaps = 47/204 (23%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTV--------------- 46
+H Y+ ++G + VCN LID Y KCG + A +VF ME + V
Sbjct: 281 IHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGN 340
Query: 47 --------------------FTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIG 86
TWSA+I G A G ++EAL +F +MI G +PN VT I
Sbjct: 341 FGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIIS 400
Query: 87 LLHACGHMGWVDEGRRFF-YSM----------TTEYGIIPQIEHYGCMVDLLSRAGFLQE 135
LL AC +G + +G YS+ G + Y ++D+ S+ +
Sbjct: 401 LLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKA 460
Query: 136 AYEFIRNMPIKP-NGVVWGALLGG 158
A ++P + N V W ++GG
Sbjct: 461 ARSIFDSIPRRERNVVTWTVMIGG 484
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 11/171 (6%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEA 65
+GF N+ VCN L+ MY +CG LE A VF E+ + V +W++++ + A
Sbjct: 178 NGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTA 237
Query: 66 LTSFNKMIEI------GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
L F++M I + + ++ + +L AC + + + + +S G
Sbjct: 238 LELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKE-IHSYAIRNGTFADAFV 296
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
++D ++ G + +A + M K + V W A++ G N A E
Sbjct: 297 CNALIDTYAKCGSMNDAVKVFNVMEFK-DVVSWNAMVTGYTQSGNFGAAFE 346
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 360 bits (925), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 168/334 (50%), Positives = 238/334 (71%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
+LIDMY KCG +E A +VF M +++ +W+AMI G A+HG+A F++M + GI+
Sbjct: 340 TSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIE 399
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ +TF+GLL AC H G +D GR F SMT +Y I P++EHYGCM+DLL +G +EA E
Sbjct: 400 PDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKE 459
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAER 198
I+ MP++P+GV+W +LL CR H N++LAE +R L +++P N G +V+LSNIYA A
Sbjct: 460 MIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGE 519
Query: 199 WEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKL 258
W++VA+VR L+ G+KK PG SSI +D VHEF+ GD+ HP+ +I+ M E++ ++
Sbjct: 520 WDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHPRNREIYGMLEEMEALLEE 579
Query: 259 KGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAA 318
G++P+TS VL ++EE+ KE L HSEKLA+ FGL++T PGT + I+KNLRVC +CH A
Sbjct: 580 AGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEA 639
Query: 319 FKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
KL+S+I REI+ RDR RFH F+ G CSC D+W
Sbjct: 640 TKLVSKIYKREIIARDRTRFHHFRDGVCSCNDFW 673
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 2/163 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + GF N+++ N LID+Y KCG +E A +F + + V +W+ +I G
Sbjct: 219 QVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMN 278
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
KEAL F +M+ G PN VT + +L AC H+G +D GR + + +
Sbjct: 279 LYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSL 338
Query: 121 -GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++ G ++ A++ +M + + W A++ G +H
Sbjct: 339 RTSLIDMYAKCGDIEAAHQVFNSM-LHKSLSSWNAMIFGFAMH 380
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 83/159 (52%), Gaps = 5/159 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ LI Y G + A+ +F E+ + V +W+AMI G A G KEAL F +M
Sbjct: 130 RDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEM 189
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
++ ++P+ T + +L AC V+ GR+ +S ++G ++ ++DL S+ G
Sbjct: 190 MKTNVRPDEGTMVTVLSACAQSRSVELGRQ-VHSWIDDHGFGSNLKIVNALIDLYSKCGQ 248
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
++ A + K + V W L+GG + +++L +EA
Sbjct: 249 VETACGLFEGLSCK-DVVSWNTLIGG---YTHMNLYKEA 283
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 89/186 (47%), Gaps = 5/186 (2%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH 93
A VF ++E W+ M++G A+ AL + MI +G+ PN TF LL +C
Sbjct: 19 AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78
Query: 94 MGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWG 153
+EG++ + + G P + + ++ + ++ G L++A++ + + + V +
Sbjct: 79 SKAFEEGQQ-IHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHK-VFDRSSHRDVVSYT 136
Query: 154 ALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213
AL+ G NI A+E ++ D ++ ++ ++S YAE +++ + K M
Sbjct: 137 ALITGYASSGNIRSAQEMFDEIPVKDVVS--WNAMISG-YAETGSYKEALELFKEMMKTN 193
Query: 214 VKKTPG 219
V+ G
Sbjct: 194 VRPDEG 199
>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
[Vitis vinifera]
Length = 1580
Score = 360 bits (925), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 165/336 (49%), Positives = 230/336 (68%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V +L+DMY KCG +E A R+F +M R + W+AM+ GLA HG A+EA+ F M G
Sbjct: 1245 VGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHG 1304
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
I+P+ V+FIG+L AC H G E + +SM +YGI P+IEHY C+VD L RAG +QEA
Sbjct: 1305 IEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEA 1364
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
+ I MP K + + ALLG CR+ +++ + + +L L+P ++ +V+LSNIYA A
Sbjct: 1365 DKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAA 1424
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGM 256
RW+DV RK+M+ VKK PG+S I V ++H FV D +HPQA+ I+ E+++ +
Sbjct: 1425 NRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTI 1484
Query: 257 KLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCH 316
+ GY+P+T VLLD+E++EKE+ LY HSEKLA+ +GL++TP T IR++KNLRVC DCH
Sbjct: 1485 REDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCH 1544
Query: 317 AAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
A K IS++ REIV+RD NRFH F+ G CSCGDYW
Sbjct: 1545 NAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 1580
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 91/171 (53%), Gaps = 5/171 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ ++GF ++ V + ++DMY+KCG + A VF + W++MI G +G
Sbjct: 1128 QIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNG 1187
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+AL +++M + + P+ TF L+ A + +++GR+ ++ + +
Sbjct: 1188 NEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQ-LHANVIKLDCVSDPFVG 1246
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
+VD+ ++ G +++AY + M ++ N +W A+L G H N AEEA
Sbjct: 1247 TSLVDMYAKCGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGN---AEEA 1293
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 1/158 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + +SG ++ V N+L++MY K GC AR VF +M+ + +W++MI A
Sbjct: 925 QVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSS 984
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+E++ F ++ G+KP+ T +L AC + R + + G I
Sbjct: 985 LEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVA 1044
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ S++G ++EA EF+ + W A++ G
Sbjct: 1045 TTLIDVYSKSGKMEEA-EFLFQNKDDLDLACWNAMMFG 1081
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 84/168 (50%), Gaps = 2/168 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ ++G + V TLID+Y K G +E A +F ++ + W+AM+ G I
Sbjct: 1027 QIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGN 1086
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
K+AL F+ + + G K + +T ACG + +D+G++ ++ + G +
Sbjct: 1087 DGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQ-IHAHAIKAGFDSDLHVN 1145
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++D+ + G + A + N P+ V W +++ GC + N D A
Sbjct: 1146 SGILDMYIKCGDMVNA-GIVFNYISAPDDVAWTSMISGCVDNGNEDQA 1192
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y+ + G ++ V L+++Y KCG + AR +F M ER V W+ M++G G
Sbjct: 749 VHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGL 808
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR 101
KEA F++ G++P+ + +L+ + W DEG+
Sbjct: 809 EKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNW-DEGK 847
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 17/152 (11%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH-----GQAKEALTSFNK 71
+ N L+ MY KCG L AR+VF ER + TW+A++ A G A+E L F
Sbjct: 658 LSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRL 717
Query: 72 MIEIGIKPNGVTFIGLLHACGHMG--WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+ +T +L C + G W EG + + G+ + G +V++ S+
Sbjct: 718 LRASLGSTTRMTLAPVLKLCLNSGCLWAAEG---VHGYAIKIGLEWDVFVSGALVNIYSK 774
Query: 130 AGFLQEA---YEFIRNMPIKPNGVVWGALLGG 158
G +++A ++++R + V+W +L G
Sbjct: 775 CGRMRDARLLFDWMRERDV----VLWNMMLKG 802
>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 785
Score = 360 bits (925), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 163/350 (46%), Positives = 233/350 (66%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H Y+ GF + +CN +IDMY KCG + +R +F M+ R + +W+ MI G IHG
Sbjct: 436 HGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLC 495
Query: 63 KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC 122
EAL+ F ++ +G+KP+ VT I +L AC H G V EG+ +F SM+ + I P++ HY C
Sbjct: 496 VEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYIC 555
Query: 123 MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182
MVDLL+RAG L EAY FI+ MP PN +WGALL CR HKNI++ E+ S+++ L P
Sbjct: 556 MVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPEG 615
Query: 183 NGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQA 242
G V++SNIY+ RW+D A +R + R+ G KK+PG S + + GV+H F+ G ++HPQ+
Sbjct: 616 TGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQSHPQS 675
Query: 243 EKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTP 302
I + ++LL MK GY ++S VL D+EE+EKE+ L HSEK+A+ FG++NT P +
Sbjct: 676 ASINKKLQELLVQMKKLGYRADSSFVLHDVEEEEKEQILLYHSEKVAIAFGILNTSPSSR 735
Query: 303 IRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I + KNLR+C DCH+A K I+ + REI VRD +RFH F+ G C+C D+W
Sbjct: 736 ILVTKNLRICVDCHSAIKFITLLTEREITVRDASRFHHFKDGICNCQDFW 785
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 3/159 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y ++ F N+ + L+DMY KC L AR++F + ++ WSAMI G +H
Sbjct: 232 IHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDS 291
Query: 62 AKEALTSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+AL ++ M+ I G+ P T +L AC + + G++ M G+
Sbjct: 292 ISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKS-GMDLDTTVG 350
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
++ + ++ G + A F+ M I + V + A++ GC
Sbjct: 351 NSLISMYAKCGIMDNAVGFLDEM-IAKDTVSYSAIISGC 388
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 20/177 (11%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIH 59
+H +++ G ++ V L+ MY KCG L A+ +F I ++R + W+AMI + H
Sbjct: 129 IHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFH 188
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG--------RRFFYSMTTEY 111
+ + S +M + G+ PN T + +L G + +G R FF+
Sbjct: 189 ALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFD----- 243
Query: 112 GIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++ Q ++D+ ++ L A + I N K N V W A++GG +H +I A
Sbjct: 244 NVVLQTA----LLDMYAKCHLLFYARK-IFNTVNKKNDVCWSAMIGGYVLHDSISDA 295
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + +SG + V N+LI MY KCG ++ A EM + ++SA+I G +G
Sbjct: 333 KLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNG 392
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A++AL F +M GI P T I LL AC H+ + G + T G
Sbjct: 393 YAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHG-TCCHGYTVVRGFTNDTSIC 451
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ S+ G + + E M + + + W ++ G +H
Sbjct: 452 NAIIDMYSKCGKITISREIFDRMQNR-DIISWNTMIIGYGIH 492
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 64/133 (48%), Gaps = 2/133 (1%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90
++ AR VF ++ + +V W+ MI+ A G ++++ + M+++G+ P TF LL A
Sbjct: 57 IQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKA 116
Query: 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGV 150
C + + G R ++ G+ + ++ + ++ G L +A ++ + +
Sbjct: 117 CSSLQALQLG-RLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDI 175
Query: 151 V-WGALLGGCRVH 162
V W A++ H
Sbjct: 176 VAWNAMIAAFSFH 188
>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
Length = 503
Score = 360 bits (925), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 165/336 (49%), Positives = 230/336 (68%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V +L+DMY KCG +E A R+F +M R + W+AM+ GLA HG A+EA+ F M G
Sbjct: 168 VGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHG 227
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
I+P+ V+FIG+L AC H G E + +SM +YGI P+IEHY C+VD L RAG +QEA
Sbjct: 228 IEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEA 287
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
+ I MP K + + ALLG CR+ +++ + + +L L+P ++ +V+LSNIYA A
Sbjct: 288 DKVIETMPFKASASINRALLGACRIQGDVEXGKRVAARLFALEPFDSAAYVLLSNIYAAA 347
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGM 256
RW+DV RK+M+ VKK PG+S I V ++H FV D +HPQA+ I+ E+++ +
Sbjct: 348 NRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTI 407
Query: 257 KLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCH 316
+ GY+P+T VLLD+E++EKE+ LY HSEKLA+ +GL++TP T IR++KNLRVC DCH
Sbjct: 408 REDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCH 467
Query: 317 AAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
A K IS++ REIV+RD NRFH F+ G CSCGDYW
Sbjct: 468 NAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 503
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 91/171 (53%), Gaps = 5/171 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ ++GF ++ V + ++DMY+KCG + A VF + W++MI G +G
Sbjct: 51 QIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNG 110
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+AL +++M + + P+ TF L+ A + +++GR+ ++ + +
Sbjct: 111 NEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQ-LHANVIKLDCVSDPFVG 169
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
+VD+ ++ G +++AY + M ++ N +W A+L G H N AEEA
Sbjct: 170 TSLVDMYAKCGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGN---AEEA 216
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Query: 52 MIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY 111
M+ G I K+AL F+ + + G K + +T ACG + +D+G++ ++ +
Sbjct: 1 MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQ-IHAHAIKA 59
Query: 112 GIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
G + ++D+ + G + A + N P+ V W +++ GC + N D A
Sbjct: 60 GFDSDLHVNSGILDMYIKCGDMVNA-GIVFNYISAPDDVAWTSMISGCVDNGNEDQA 115
>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1092
Score = 360 bits (925), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 171/344 (49%), Positives = 232/344 (67%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ ++ V LID+Y KCG LE A +F E+ T W+A+I L IHG
Sbjct: 447 KIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHG 506
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +EAL F M+ +K + +TF+ LL AC H G VDEG++ F M EYGI P ++HY
Sbjct: 507 RGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHY 566
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLL RAG+L++AYE +RNMPI+P+ +WGALL C+++ N +L AS +L ++D
Sbjct: 567 GCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDS 626
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N GY+V+LSNIYA E+WE V +VR L R+ G++KTPGWSS+ V F G++THP
Sbjct: 627 ENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHP 686
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I++ + L MK GY+P+ S V DIEE EKE+ L HSE+LA+ FG+++TPP
Sbjct: 687 KYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTPPR 746
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAG 344
+PIRI KNLRVC DCH A K IS I REIVVRD NRFH F+ G
Sbjct: 747 SPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDG 790
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 77/151 (50%), Gaps = 3/151 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+++ + N L++MY K G + A VF ++ + +W+ ++ G +G A EA+ ++N M
Sbjct: 357 KDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMM 416
Query: 73 IEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
E PN T++ ++ A H+G + +G + ++ + + + C++DL + G
Sbjct: 417 EECRDTIPNQGTWVSIIPAYSHVGALQQGMK-IHAKLIKNSLYLDVFVATCLIDLYGKCG 475
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
L++A +P + V W A++ +H
Sbjct: 476 RLEDAMSLFYEIP-RDTSVPWNAIIASLGIH 505
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + GF ++ V +L+ +Y + G L+ A +VF++M + V +W+AMI G +G
Sbjct: 142 KVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNG 201
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A AL N+M G+K + +T +L C V G + ++G+ +
Sbjct: 202 NAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVING-VLIHLHVLKHGLDSDVFVS 260
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++++ S+ G LQ+A M ++ + V W +++
Sbjct: 261 NALINMYSKFGRLQDAQMVFDQMEVR-DLVSWNSIIAA 297
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 77/153 (50%), Gaps = 9/153 (5%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G +NI + LI++YV G + +R F + ++ +F+W+++I G+ EA+
Sbjct: 49 GKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCV 108
Query: 70 NKMIEI----GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125
N++ + ++P+ TF +L AC + VD G++ + + G + +V
Sbjct: 109 NQLFSMCGGGHLRPDFYTFPPILKAC--VSLVD-GKK-VHCCVFKMGFEDDVFVAASLVH 164
Query: 126 LLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
L SR G L A++ +MP+K G W A++ G
Sbjct: 165 LYSRYGVLDVAHKVFVDMPVKDVG-SWNAMISG 196
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 4/170 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G ++ V N LI+MY K G L+ A+ VF +ME R + +W+++I +
Sbjct: 244 IHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNND 303
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AL F M GI+P+ +T + L + R + + +
Sbjct: 304 PSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGN 363
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
+V++ ++ G++ A+ +P K + + W L+ G + LA EA
Sbjct: 364 ALVNMYAKLGYMNCAHTVFDQLPRK-DTISWNTLVTG---YTQNGLASEA 409
>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g57430, chloroplastic; Flags: Precursor
gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 890
Score = 360 bits (925), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 168/352 (47%), Positives = 237/352 (67%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ ++ ++ V + L+DMY KCGCL+ +R+VF ++ ++ V TW+ +I +HG
Sbjct: 539 IHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGN 598
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA+ M+ G+KPN VTFI + AC H G VDEG R FY M +YG+ P +HY
Sbjct: 599 GQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYA 658
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGV-VWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL RAG ++EAY+ + MP N W +LLG R+H N+++ E A++ L QL+P
Sbjct: 659 CVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEP 718
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++V+L+NIY+ A W+ VR+ M+ GV+K PG S I VH+FVAGD +HP
Sbjct: 719 NVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHP 778
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q+EK+ E L + M+ +GY+P+TS VL ++EE EKE L HSEKLA+ FG++NT PG
Sbjct: 779 QSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPG 838
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IR+ KNLRVC DCH A K IS+IV+REI++RD RFH F+ G+CSCGDYW
Sbjct: 839 TIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 13/174 (7%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G R+ V NTL+DMY + G ++ A R+F +ME+R + TW+ MI G
Sbjct: 427 IHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEH 486
Query: 62 AKEALTSFNKM-----------IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE 110
++AL +KM + +KPN +T + +L +C + + +G+ ++ +
Sbjct: 487 HEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKE-IHAYAIK 545
Query: 111 YGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKN 164
+ + +VD+ ++ G LQ + + +P K N + W ++ +H N
Sbjct: 546 NNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK-NVITWNVIIMAYGMHGN 598
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 4/159 (2%)
Query: 2 VHEYSNQSG-FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+H Y+ ++G N V + L+DMY C + RRVF M +R + W+AMI G + +
Sbjct: 324 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNE 383
Query: 61 QAKEALTSFNKMIE-IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
KEAL F M E G+ N T G++ AC G + + + G+
Sbjct: 384 HDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR-KEAIHGFVVKRGLDRDRFV 442
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ SR G + A M + + V W ++ G
Sbjct: 443 QNTLMDMYSRLGKIDIAMRIFGKMEDR-DLVTWNTMITG 480
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 1 RVHEYSNQSGFR-RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
++H + + G+ ++ V NTL+++Y KCG +VF + ER +W+++I L
Sbjct: 118 QIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSF 177
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM 94
+ + AL +F M++ ++P+ T + ++ AC ++
Sbjct: 178 EKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 212
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y + G N + NTL+ MY K G L ++ + R + TW+ ++ L +
Sbjct: 223 QVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNE 281
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF 103
Q EAL +M+ G++P+ T +L AC H+ + G+
Sbjct: 282 QLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 67/146 (45%), Gaps = 4/146 (2%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88
+ GA +FI + R+ W +++ +EA+ ++ MI +GIKP+ F LL
Sbjct: 46 SAVSGAPSIFIS-QSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALL 104
Query: 89 HACGHMGWVDEGRRFFYSMTTEYGI-IPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKP 147
A + ++ G++ ++ ++G + + +V+L + G Y+ + +
Sbjct: 105 KAVADLQDMELGKQ-IHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISER- 162
Query: 148 NGVVWGALLGGCRVHKNIDLAEEASR 173
N V W +L+ + ++A EA R
Sbjct: 163 NQVSWNSLISSLCSFEKWEMALEAFR 188
>gi|308080542|ref|NP_001183145.1| uncharacterized protein LOC100501514 [Zea mays]
gi|238009628|gb|ACR35849.1| unknown [Zea mays]
Length = 332
Score = 360 bits (925), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 168/332 (50%), Positives = 233/332 (70%), Gaps = 3/332 (0%)
Query: 24 MYVKCGCLEGARRVFIEME---ERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
MY KCG LE A VF ++ +R V W+AMI G A+HG+++EAL +F ++ G+ P
Sbjct: 1 MYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPT 60
Query: 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFI 140
+TFIG+L+AC H G VDEGR +M EYGI+P++EHYGCMVDLL RAG ++EA++ +
Sbjct: 61 DITFIGVLNACSHSGLVDEGRALLAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLV 120
Query: 141 RNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWE 200
R+M KP+ +W +LLG CR+HKN+ L + + L N+G +V+LSN+YA A +W
Sbjct: 121 RSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVANGLANSGTYVLLSNMYAAAGKWR 180
Query: 201 DVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKG 260
+V RVR +MR GV+K PG S++ V V EFVAGD +HP++ +I+ E++ + +G
Sbjct: 181 EVGRVRSMMRASGVQKEPGCSAVEVGRRVVEFVAGDRSHPRSAEIYAKLEEVNSIARARG 240
Query: 261 YIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAAFK 320
++P+T +VL D+++ KE+ L HSEKLAL FGL++TPP T I+I+KNLR C DCHA K
Sbjct: 241 HVPHTELVLHDLDDAAKERALAVHSEKLALAFGLISTPPRTGIKIVKNLRACADCHAVLK 300
Query: 321 LISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
L+SE R+IV RDRNRFH F GSCSCGDYW
Sbjct: 301 LVSEATGRKIVFRDRNRFHHFVDGSCSCGDYW 332
>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
Length = 558
Score = 360 bits (925), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 171/348 (49%), Positives = 229/348 (65%)
Query: 5 YSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKE 64
+ +++G + + L+DM+ +CGC+E + RVF EM ER V TW+A+I GLA+HG++ E
Sbjct: 211 FISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAE 270
Query: 65 ALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMV 124
AL F +M G +P+ VTF G+L AC H G V EG F S+ EYG+ P EHYGCMV
Sbjct: 271 ALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMV 330
Query: 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNG 184
DLL RAG L EA +F+ MPI+PN ++W LLG C H I+LAE+ ++++LD ++G
Sbjct: 331 DLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYIELAEKVKEKINELDSYHDG 390
Query: 185 YHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEK 244
+V+LSN+Y RW + A VR MR + K PG S I V+ ++HEFVAGD HPQ E
Sbjct: 391 DYVLLSNVYGGVGRWAEKAGVRNSMREKRISKKPGCSLINVNHLIHEFVAGDNNHPQFES 450
Query: 245 IFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIR 304
I + ++D +K+ GY P+ S VL DIEE+EKE L HSEKLA+ F L+ IR
Sbjct: 451 IREFLVSMIDSLKVVGYTPDISNVLFDIEEEEKESTLGYHSEKLAVAFALLCFKDSRTIR 510
Query: 305 IMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+MKNLR+C DCH K S++ REI++RDRNRFH F GSCSC DYW
Sbjct: 511 VMKNLRICHDCHCFMKYASDVFEREIIIRDRNRFHHFSKGSCSCRDYW 558
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 131/297 (44%), Gaps = 41/297 (13%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + GF ++ V N LI Y CG L+ A + F EM ER + +WS+MI A +G
Sbjct: 106 LHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGF 165
Query: 62 AKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL F +M +G +KP+ V + ++ A +G ++ G ++ + G+ +
Sbjct: 166 GYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELG-KWIRGFISRNGLEFTVSLG 224
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+VD+ SR G ++E+ M + N + W AL+ G VH + EA R ++
Sbjct: 225 TALVDMFSRCGCIEESMRVFDEMG-ERNVLTWTALINGLAVHGR---SAEALRMFYEMR- 279
Query: 181 LNNGY---HVVLSNIYAE-------AERWEDVARVRKLMRNLGVKKTPGWSSITVD---- 226
N+G+ HV + + +E W +R G++ P VD
Sbjct: 280 -NHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRN---EYGMEPLPEHYGCMVDLLGR 335
Query: 227 -GVVHE---FVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEK 279
G+++E FV G P + +W LL YI ++ EK KEK
Sbjct: 336 AGLLNEACKFVDGMPIRPNS----IIWRTLLGACVNHNYI--------ELAEKVKEK 380
>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 701
Score = 360 bits (925), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 168/344 (48%), Positives = 242/344 (70%), Gaps = 1/344 (0%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF N + ++L+DMY KCG ++ AR VF +++R + W+A+I G A+HG A +A++ F
Sbjct: 358 GFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLF 417
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
M+E G++P V F+ +L AC H G VDEG R+F SM ++GI P +EHY + DLL R
Sbjct: 418 ENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGR 477
Query: 130 AGFLQEAYEFIRNM-PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVV 188
AG L+EAY+FI NM ++P G VW LL CR HK+++LAE+ +L +D N G +V+
Sbjct: 478 AGRLEEAYDFISNMRGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVL 537
Query: 189 LSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQM 248
+SNIY+ A+RW+D AR+R MR G+KKTP S I V VH F+AGD++HP +KI +
Sbjct: 538 MSNIYSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKA 597
Query: 249 WEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKN 308
+ LL+ M+ +GY+ +T+ VL D++E+ K + L+ HSE+LA+ +G+++T GT IR++KN
Sbjct: 598 LDVLLEQMEKEGYVIDTNQVLHDVDEELKRELLHNHSERLAIAYGIISTTAGTTIRVIKN 657
Query: 309 LRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+RVC DCH A K I++IV REI VRD +RFH F+ GSCSCGDYW
Sbjct: 658 IRVCADCHTAIKFITKIVGREITVRDNSRFHHFKNGSCSCGDYW 701
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 85/161 (52%), Gaps = 2/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ ++GF ++ + ++LIDMY KC LE + R F + + +W+++I G +G+
Sbjct: 249 IHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGE 308
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
L F +M++ +KP V+F ++ AC H+ + GR+ + G
Sbjct: 309 FDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQ-LHGCIVRLGFDDNEFIAS 367
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ ++ G ++ A ++ + K + V W A++ GC +H
Sbjct: 368 SLVDMYAKCGNIKMA-RYVFDRIDKRDMVAWTAIIMGCAMH 407
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 74/174 (42%), Gaps = 18/174 (10%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKC---------------GCLEGARRVFIEMEERTV 46
+H + + G ++ + N LI+ Y K ++ ++VF M R V
Sbjct: 132 LHACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDV 191
Query: 47 FTWSAMIQGLAIHGQAKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFY 105
+W+ +I G A +G EAL +M + G +KP+ T +L V++G+ +
Sbjct: 192 VSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKE-IH 250
Query: 106 SMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
G + ++D+ ++ L+ + +P + + + W +++ GC
Sbjct: 251 GYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILP-RKDAISWNSIIAGC 303
>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
Length = 803
Score = 360 bits (925), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 168/352 (47%), Positives = 237/352 (67%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ ++ ++ V + L+DMY KCGCL+ +R+VF ++ ++ V TW+ +I +HG
Sbjct: 452 IHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGN 511
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA+ M+ G+KPN VTFI + AC H G VDEG R FY M +YG+ P +HY
Sbjct: 512 GQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYA 571
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGV-VWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL RAG ++EAY+ + MP N W +LLG R+H N+++ E A++ L QL+P
Sbjct: 572 CVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEP 631
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++V+L+NIY+ A W+ VR+ M+ GV+K PG S I VH+FVAGD +HP
Sbjct: 632 NVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHP 691
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q+EK+ E L + M+ +GY+P+TS VL ++EE EKE L HSEKLA+ FG++NT PG
Sbjct: 692 QSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPG 751
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IR+ KNLRVC DCH A K IS+IV+REI++RD RFH F+ G+CSCGDYW
Sbjct: 752 TIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 803
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 13/174 (7%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G R+ V NTL+DMY + G ++ A R+F +ME+R + TW+ MI G
Sbjct: 340 IHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEH 399
Query: 62 AKEALTSFNKM-----------IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE 110
++AL +KM + +KPN +T + +L +C + + +G+ ++ +
Sbjct: 400 HEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKE-IHAYAIK 458
Query: 111 YGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKN 164
+ + +VD+ ++ G LQ + + +P K N + W ++ +H N
Sbjct: 459 NNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK-NVITWNVIIMAYGMHGN 511
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 4/159 (2%)
Query: 2 VHEYSNQSG-FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+H Y+ ++G N V + L+DMY C + RRVF M +R + W+AMI G + +
Sbjct: 237 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNE 296
Query: 61 QAKEALTSFNKMIE-IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
KEAL F M E G+ N T G++ AC G + + + G+
Sbjct: 297 HDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR-KEAIHGFVVKRGLDRDRFV 355
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ SR G + A M + + V W ++ G
Sbjct: 356 QNTLMDMYSRLGKIDIAMRIFGKMEDR-DLVTWNTMITG 393
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 1 RVHEYSNQSGFR-RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
++H + + G+ ++ V NTL+++Y KCG +VF + ER +W+++I L
Sbjct: 31 QIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSF 90
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM 94
+ + AL +F M++ ++P+ T + ++ AC ++
Sbjct: 91 EKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 125
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y + G N + NTL+ MY K G L ++ + R + TW+ ++ L +
Sbjct: 136 QVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNE 194
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF 103
Q EAL +M+ G++P+ T +L AC H+ + G+
Sbjct: 195 QLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 237
>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 360 bits (924), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 167/345 (48%), Positives = 234/345 (67%), Gaps = 1/345 (0%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
++GF+ N L+ MY KCG +E A VF ++ E+ + +W+ MI G A HG KEAL
Sbjct: 433 KAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALA 492
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F M ++ IKP+ VT +G+L AC H G+VD+G +F SM YGI +HY CM+DLL
Sbjct: 493 LFESM-KMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLL 551
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV 187
RAG L EA +++MP P+ WGALLG R+H + +L E+A+ ++ +++P N+G +V
Sbjct: 552 GRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYV 611
Query: 188 VLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQ 247
+LSN+YA + RW +V +R MR+ GVKK PG+S + + H F GD +HP+AE+I+
Sbjct: 612 LLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYA 671
Query: 248 MWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMK 307
E+L +K G++ +T +VL D+EE+EKE L HSEKLA+ FG+++ PPG PIR++K
Sbjct: 672 YLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIK 731
Query: 308 NLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
NLRVCEDCH A K IS+I R+I+VRD NRFH F GSCSCGDYW
Sbjct: 732 NLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 13/166 (7%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ N ++ YVK G L AR +F +M E+ V +W+AM+ G A +G +EA F++M
Sbjct: 120 RDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM 179
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ N +++ GLL A G +++ RR F S + +I + C++ R
Sbjct: 180 ----LVKNEISWNGLLSAYVQNGRIEDARRLFDS-----KMDWEIVSWNCLMGGYVRKKR 230
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
L +A MP++ + + W ++ G + L EA R ++L
Sbjct: 231 LDDARSLFDRMPVR-DKISWNIMITG---YAQNGLLSEARRLFEEL 272
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 109/272 (40%), Gaps = 42/272 (15%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN NT++ Y +CG ++ A+ +F EM +R +W+AMI G A GQ++EAL F KM
Sbjct: 337 RNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKM 396
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF---------------YSMTTEYGIIPQI 117
G N L +C + ++ G++ ++ YG I
Sbjct: 397 KRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSI 456
Query: 118 EH---------------YGCMVDLLSRAGFLQEAYEFIRN--MPIKPNGVVWGALLGGCR 160
E + M+ +R GF +EA + M IKP+ V +L C
Sbjct: 457 EEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLSACS 516
Query: 161 VHKNIDLAEEASRQLDQLDPL--NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTP 218
+D E + Q + N ++ + ++ A R ++ + K M T
Sbjct: 517 HTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAAT- 575
Query: 219 GWSSITVDGVVHEFVAGDET--HPQAEKIFQM 248
W ++ +H GD AEK+F+M
Sbjct: 576 -WGALLGASRIH----GDTELGEKAAEKVFEM 602
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 111/248 (44%), Gaps = 22/248 (8%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
RR+ N +I Y+ + AR+VF +M +R + +W+ M+ G +G A FN+
Sbjct: 88 RRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQ 147
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M E + V++ +L G+V+E R+ F M + I + ++ + G
Sbjct: 148 MPEKDV----VSWNAMLSGFAQNGFVEEARKIFDQMLVKNEI-----SWNGLLSAYVQNG 198
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSN 191
+++A + + V W L+GG K +D A ++ D ++ ++++++
Sbjct: 199 RIEDARRLF-DSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKIS--WNIMITG 255
Query: 192 IYAEAERWEDVARVRKLMRNLGVKKTPGWSSITV----DGVVHEFVAGDETHPQAEKIFQ 247
YA+ ++ R+L L ++ W+++ +G++ E E P+ ++
Sbjct: 256 -YAQNGL---LSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEV-- 309
Query: 248 MWEKLLDG 255
W ++ G
Sbjct: 310 SWNAMIAG 317
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N +I Y + G L ARR+F E+ R VF W+AM+ G +G EA F +M E
Sbjct: 250 NIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPE---- 305
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
N V++ ++ +++ R F M + + MV ++ G + +A
Sbjct: 306 KNEVSWNAMIAGYVQSQQIEKARELFDQMPSR-----NTSSWNTMVTGYAQCGNIDQAKI 360
Query: 139 FIRNMPIKPNGVVWGALLGG 158
MP + + + W A++ G
Sbjct: 361 LFDEMP-QRDCISWAAMISG 379
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 108/268 (40%), Gaps = 32/268 (11%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N I Y++ G E A VF M R+ T++AMI G + + A F KM + +
Sbjct: 64 NRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLI 123
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
V G + G + R F M + + + M+ ++ GF++EA +
Sbjct: 124 SWNVMLSGYVKN----GNLSAARALFNQMPEK-----DVVSWNAMLSGFAQNGFVEEARK 174
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLD-QLDPLNNGYHVVLSNIYAEAE 197
M +K N + W LL + I E+A R D ++D ++ ++ Y +
Sbjct: 175 IFDQMLVK-NEISWNGLLSAYVQNGRI---EDARRLFDSKMDWEIVSWNCLMGG-YVRKK 229
Query: 198 RWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQ--------MW 249
R +D R L + V+ W +I + G A + +A ++F+ W
Sbjct: 230 RLDD---ARSLFDRMPVRDKISW-NIMITG-----YAQNGLLSEARRLFEELPIRDVFAW 280
Query: 250 EKLLDGMKLKGYIPNTSVVLLDIEEKEK 277
++ G G + + + ++ EK +
Sbjct: 281 TAMVSGFVQNGMLDEATRIFEEMPEKNE 308
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ ++ +V+ G L+ A R+F EM E+ +W+AMI G Q ++A F++M
Sbjct: 275 RDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQM 334
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE--HYGCMVDLLSRA 130
N ++ ++ G +D+ + F M PQ + + M+ +++
Sbjct: 335 ----PSRNTSSWNTMVTGYAQCGNIDQAKILFDEM-------PQRDCISWAAMISGYAQS 383
Query: 131 GFLQEAYEFIRNM 143
G +EA M
Sbjct: 384 GQSEEALHLFIKM 396
>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
Length = 890
Score = 360 bits (924), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 168/352 (47%), Positives = 237/352 (67%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ ++ ++ V + L+DMY KCGCL+ +R+VF ++ ++ V TW+ +I +HG
Sbjct: 539 IHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGN 598
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA+ M+ G+KPN VTFI + AC H G VDEG R FY M +YG+ P +HY
Sbjct: 599 GQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYA 658
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGV-VWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL RAG ++EAY+ + MP N W +LLG R+H N+++ E A++ L QL+P
Sbjct: 659 CVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEP 718
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++V+L+NIY+ A W+ VR+ M+ GV+K PG S I VH+FVAGD +HP
Sbjct: 719 NVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHP 778
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q+EK+ E L + M+ +GY+P+TS VL ++EE EKE L HSEKLA+ FG++NT PG
Sbjct: 779 QSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPG 838
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IR+ KNLRVC DCH A K IS+IV+REI++RD RFH F+ G+CSCGDYW
Sbjct: 839 TIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 13/174 (7%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G R+ V NTL+DMY + G ++ A R+F +ME+R + TW+ MI G
Sbjct: 427 IHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEH 486
Query: 62 AKEALTSFNKM-----------IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE 110
++AL +KM + +KPN +T + +L +C + + +G+ ++ +
Sbjct: 487 HEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKE-IHAYAIK 545
Query: 111 YGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKN 164
+ + +VD+ ++ G LQ + + +P K N + W ++ +H N
Sbjct: 546 NNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK-NVITWNVIIMAYGMHGN 598
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 4/159 (2%)
Query: 2 VHEYSNQSG-FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+H Y+ ++G N V + L+DMY C + RRVF M +R + W+AMI G + +
Sbjct: 324 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNE 383
Query: 61 QAKEALTSFNKMIE-IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
KEAL F M E G+ N T G++ AC G + + + G+
Sbjct: 384 HDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR-KEAIHGFVVKRGLDRDRFV 442
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ SR G + A M + + V W ++ G
Sbjct: 443 QNTLMDMYSRLGKIDIAMRIFGKMEDR-DLVTWNTMITG 480
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 1 RVHEYSNQSGFR-RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
++H + + G+ ++ V NTL+++Y KCG +VF + ER +W+++I L
Sbjct: 118 QIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSF 177
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM 94
+ + AL +F M++ ++P+ T + ++ AC ++
Sbjct: 178 EKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 212
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y + G N + NTL+ MY K G L ++ + R + TW+ ++ L +
Sbjct: 223 QVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNE 281
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF 103
Q EAL +M+ G++P+ T +L AC H+ + G+
Sbjct: 282 QLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 67/146 (45%), Gaps = 4/146 (2%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88
+ GA +FI + R+ W +++ +EA+ ++ MI +GIKP+ F LL
Sbjct: 46 SAVSGAPSIFIS-QSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALL 104
Query: 89 HACGHMGWVDEGRRFFYSMTTEYGI-IPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKP 147
A + ++ G++ ++ ++G + + +V+L + G Y+ + +
Sbjct: 105 KAVADLQDMELGKQ-IHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISER- 162
Query: 148 NGVVWGALLGGCRVHKNIDLAEEASR 173
N V W +L+ + ++A EA R
Sbjct: 163 NQVSWNSLISSLCSFEKWEMALEAFR 188
>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
[Vitis vinifera]
gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
Length = 742
Score = 360 bits (924), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 172/349 (49%), Positives = 241/349 (69%), Gaps = 1/349 (0%)
Query: 4 EYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAK 63
+Y N++ +R ++ V LIDM+ KCG ++ AR VF ++ V WSAMI G +HG+ +
Sbjct: 395 DYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQ 454
Query: 64 EALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCM 123
+A+ F M + G+ PN VTF+GLL AC H G V+EG F+SM YGI + +HY C+
Sbjct: 455 DAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMKY-YGIEARHQHYACV 513
Query: 124 VDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183
VDLL R+G L EAY+FI MPI+P VWGALLG C++++++ L E A+ QL LDP N
Sbjct: 514 VDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNT 573
Query: 184 GYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAE 243
G++V LSN+YA + W+ VA+VR LMR G+ K G+S I ++G + F GD++HP+ +
Sbjct: 574 GHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLIEINGKLQAFRVGDKSHPRFK 633
Query: 244 KIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPI 303
+IF+ E L +K G+IP+ VL D+ ++EKE+ L HSE+LA+ +GL++T PGT +
Sbjct: 634 EIFEELESLERRLKEAGFIPHIESVLHDLNQEEKEETLCNHSERLAIAYGLISTAPGTTL 693
Query: 304 RIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
RI KNLR C +CH+A KLIS++VNREIVVRD NRFH F+ G CSC DYW
Sbjct: 694 RITKNLRACINCHSATKLISKLVNREIVVRDANRFHHFKNGVCSCRDYW 742
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 84/158 (53%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH + GF ++ V N L+ +Y KCG +E AR VF +++R + +W++MI G +G
Sbjct: 190 RVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNG 249
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL F +M + +KP+ + + +L A + +++G+ + + G+ + +
Sbjct: 250 LPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKS-IHGCVVKMGLEFEPDLL 308
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ + ++ G + A F M I PN ++W A++ G
Sbjct: 309 ISLTAMYAKCGQVMVARSFFDQMEI-PNVMMWNAMISG 345
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 4/144 (2%)
Query: 20 TLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP 79
+L MY KCG + AR F +ME V W+AMI G A +G EA+ F +MI I+
Sbjct: 310 SLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRT 369
Query: 80 NGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
+ +T + AC +G +D + Y TEY + ++D+ ++ G + A E
Sbjct: 370 DSITVRSAILACAQVGSLDLAKWMGDYINKTEYR--NDVFVNTALIDMFAKCGSVDLARE 427
Query: 139 FIRNMPIKPNGVVWGALLGGCRVH 162
+ + + + VVW A++ G +H
Sbjct: 428 -VFDRTLDKDVVVWSAMIVGYGLH 450
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H SG + + ++ G + AR+VF E E +VF W+A+I+G + H
Sbjct: 89 QIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHN 148
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+ +++M G+ P+G T +L AC + ++ G+R + G +
Sbjct: 149 FFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKR-VHGQIFRLGFESDVFVQ 207
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V L ++ G +++A + + N V W +++ G
Sbjct: 208 NGLVALYAKCGRVEQARIVFEGLDDR-NIVSWTSMISG 244
>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 558
Score = 360 bits (924), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 171/348 (49%), Positives = 229/348 (65%)
Query: 5 YSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKE 64
+ +++G + + L+DM+ +CGC+E + RVF EM ER V TW+A+I GLA+HG++ E
Sbjct: 211 FISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAE 270
Query: 65 ALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMV 124
AL F +M G +P+ VTF G+L AC H G V EG F S+ EYG+ P EHYGCMV
Sbjct: 271 ALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMV 330
Query: 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNG 184
DLL RAG L EA +F+ MPI+PN ++W LLG C H I+LAE+ ++++LD ++G
Sbjct: 331 DLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYIELAEKVKEKINELDSYHDG 390
Query: 185 YHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEK 244
+V+LSN+Y RW + A VR MR + K PG S I V+ ++HEFVAGD HPQ E
Sbjct: 391 DYVLLSNVYGGVGRWAEKAGVRNSMREKRISKKPGCSLINVNHLIHEFVAGDNNHPQFES 450
Query: 245 IFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIR 304
I + ++D +K+ GY P+ S VL DIEE+EKE L HSEKLA+ F L+ IR
Sbjct: 451 IREFLVSMIDSLKVVGYTPDISNVLFDIEEEEKESTLGYHSEKLAVAFALLCFKDSRTIR 510
Query: 305 IMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+MKNLR+C DCH K S++ REI++RDRNRFH F GSCSC DYW
Sbjct: 511 VMKNLRICHDCHCFMKYASDVFEREIIIRDRNRFHHFSKGSCSCRDYW 558
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 132/297 (44%), Gaps = 41/297 (13%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + GF ++ V N LI Y CG L+ A +VF EM ER + +WS+MI A +G
Sbjct: 106 LHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGF 165
Query: 62 AKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL F +M +G +KP+ V + ++ A +G ++ G ++ + G+ +
Sbjct: 166 GYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELG-KWIRGFISRNGLEFTVSLG 224
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+VD+ SR G ++E+ M + N + W AL+ G VH + EA R ++
Sbjct: 225 TALVDMFSRCGCIEESMRVFDEMG-ERNVLTWTALINGLAVHGR---SAEALRMFYEMR- 279
Query: 181 LNNGY---HVVLSNIYAE-------AERWEDVARVRKLMRNLGVKKTPGWSSITVD---- 226
N+G+ HV + + +E W +R G++ P VD
Sbjct: 280 -NHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRN---EYGMEPLPEHYGCMVDLLGR 335
Query: 227 -GVVHE---FVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEK 279
G+++E FV G P + +W LL YI ++ EK KEK
Sbjct: 336 AGLLNEACKFVDGMPIRPNS----IIWRTLLGACVNHNYI--------ELAEKVKEK 380
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 360 bits (924), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 173/352 (49%), Positives = 242/352 (68%), Gaps = 6/352 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+ +N S R +LIDMY KCG +E A +VF M RT+ +AMI G A+HG
Sbjct: 365 RIKGVTNASSLR------TSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHG 418
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A A F++M + GI+P+ +TF+GLL AC H G +D GRR F SMT Y I P++EHY
Sbjct: 419 RANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHY 478
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCM+DLL G +EA E I M ++P+GV+W +LL C++H N++L E +++L +++P
Sbjct: 479 GCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEP 538
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +V+LSNIYA A RW +VA +R L+ + G+KK PG SSI +D VVHEF+ GD+ HP
Sbjct: 539 ENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHP 598
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ M E++ ++ G++P+TS VL ++EE+ K+ L HSEKLA+ FGL++T PG
Sbjct: 599 RNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEFKQGALRHHSEKLAIAFGLISTKPG 658
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T + I+KNLRVC +CH A KLIS+I REI+ RDR RFH F+ G CSC DYW
Sbjct: 659 TKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 5/163 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + G N+++ N LID+Y KCG +E A +F + + V +W+ MI G
Sbjct: 256 QVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLN 315
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY-GIIPQIEH 119
KEAL F +M+ G PN VT + +L AC +G +D GR + G+
Sbjct: 316 LYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSL 375
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKP----NGVVWGALLGG 158
++D+ ++ G ++ A++ +M + N +++G + G
Sbjct: 376 RTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHG 418
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 87/159 (54%), Gaps = 5/159 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ LI Y G +E A+++F E+ + V +W+A+I G A G KEAL F +M
Sbjct: 167 RDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEM 226
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
++ +KP+ T + ++ AC G + GR+ +S ++G+ ++ ++DL S+ G
Sbjct: 227 MKTNVKPDESTMVTVVSACAQSGSIQLGRQ-VHSWIDDHGLGSNLKIVNALIDLYSKCGE 285
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
++ A + + K + + W ++GG + +++L +EA
Sbjct: 286 VETACGLFQGLSNK-DVISWNTMIGG---YTHLNLYKEA 320
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 63/158 (39%), Gaps = 31/158 (19%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90
L A VF ++E + W+ M +G A+ A+ + MI +G+ PN TF LL +
Sbjct: 53 LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKS 112
Query: 91 CGHMGWVDEGRRF------------------FYSMTTEYG-------IIPQIEH-----Y 120
C + EG++ SM + G + H Y
Sbjct: 113 CAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSY 172
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + G+++ A + +P+K + V W A++ G
Sbjct: 173 TALITGYASRGYIESAQKMFDEIPVK-DVVSWNAIISG 209
>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 809
Score = 360 bits (924), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 174/351 (49%), Positives = 232/351 (66%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +S +N+ V L+DMY KCG + AR +F M ER V TW+AMI G HG
Sbjct: 460 IHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGF 519
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K AL F +M + IKPNGVTF+ ++ AC H G V+ G + FY M Y I ++HYG
Sbjct: 520 GKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYG 579
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
MVDLL RAG L EA++FI MP+KP V+GA+LG C++HKN++ AE+A+ +L +L+P
Sbjct: 580 AMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPD 639
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ GYHV+L+NIY A WE V +VR M G++KTPG S + + VH F +G HP
Sbjct: 640 DGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPD 699
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++KI+ EKL+ +K GY+P+T++V L +E KE+ L HSEKLA++FGL+NT GT
Sbjct: 700 SKKIYAFLEKLICHIKEAGYVPDTNLV-LGVENDVKEQLLSTHSEKLAISFGLLNTTAGT 758
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I + KNLRVC DCH A K IS + REIVVRD RFH F+ G+CSCGDYW
Sbjct: 759 TIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ +SGF + + L+DMY KCG LE AR++F M ER V +W++MI +
Sbjct: 258 IHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNEN 317
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA+ F KM++ G+KP V+ +G LHAC +G ++ G RF + ++ E G+ +
Sbjct: 318 PKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERG-RFIHKLSVELGLDRNVSVVN 376
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + + + A + + V W A++ G
Sbjct: 377 SLISMYCKCKEVDTAASMFGKLQSR-TLVSWNAMILG 412
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 41/195 (21%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ S + G RN+ V N+LI MY KC ++ A +F +++ RT+ +W+AMI G A +G+
Sbjct: 359 IHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGR 418
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACG------HMGWV---------DEG------ 100
+AL F++M +KP+ T++ ++ A H W+ D+
Sbjct: 419 PIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTA 478
Query: 101 -------------RRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM---P 144
R + M +E + + M+D GF + A E M
Sbjct: 479 LVDMYAKCGAIMIARLIFDMMSE----RHVTTWNAMIDGYGTHGFGKAALELFEEMQKGT 534
Query: 145 IKPNGVVWGALLGGC 159
IKPNGV + +++ C
Sbjct: 535 IKPNGVTFLSVISAC 549
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 80/156 (51%), Gaps = 4/156 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +SGF ++ L +MY KC + AR+VF M ER + +W+ ++ G + +G
Sbjct: 157 IHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGM 216
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHY 120
A+ AL M E +KP+ +T + +L A + + G+ Y+M + + + I
Sbjct: 217 ARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNIS-- 274
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
+VD+ ++ G L+ A + M ++ N V W +++
Sbjct: 275 TALVDMYAKCGSLETARQLFDGM-LERNVVSWNSMI 309
>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
Length = 665
Score = 360 bits (923), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 235/351 (66%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H ++ + GF ++ V + L+DMY KCG ++ AR +F M R V +W+AMI G A++G+
Sbjct: 315 AHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGE 374
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A A+ F+ M++ KP+ VTF LL AC G +EGR +F M EYG+ P++EHY
Sbjct: 375 AVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYA 434
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMV LL RAG L EAY+ I +MP +P+ +WG+LLG CRVH N+DLAE A+ +L L+P
Sbjct: 435 CMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPE 494
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V+LSNIYA + W+ V RVR++M+++G+KK G S I + VH +AGD++HP
Sbjct: 495 NAGNYVLLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIEIKNKVHMLLAGDDSHPM 554
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
I + +L M+ G++P+T VL D+EE+EK+ L HSEKLA+ GL++T PGT
Sbjct: 555 MTAIIEKINQLNIQMRKLGFVPSTDFVLHDVEEQEKDDILAVHSEKLAVALGLISTSPGT 614
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+R++KNLR+C DCH A K IS REI VRD NRFH F G CSCGD+W
Sbjct: 615 TLRVIKNLRICGDCHEAMKFISSFEGREISVRDTNRFHHFSGGKCSCGDFW 665
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 35/192 (18%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y+ ++G R + V LIDMY KCG RVF E V + +A+I GL+ +
Sbjct: 178 QLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNA 237
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q EAL F + ++ G++ N V++ ++ C G E FF M + G P
Sbjct: 238 QVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQ-GTEPNSVTI 296
Query: 121 GCMVDLLS----------------RAGFLQEAY------------------EFIRNMPIK 146
C++ + R GFL + Y I + +
Sbjct: 297 PCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVS 356
Query: 147 PNGVVWGALLGG 158
N V W A++GG
Sbjct: 357 RNVVSWNAMIGG 368
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME--ERTVFTWSAMIQGLAIH 59
+H + SG R+ V ++L+ Y++ G AR +F M +RTV WSA++ A
Sbjct: 39 LHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALVAAHAAR 98
Query: 60 GQAKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
G A+ A +M + G++PN +T+ GL+ G + +M E + P
Sbjct: 99 GDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDAT 158
Query: 119 HYGCMVDLLSRAGFLQ 134
C + + G +
Sbjct: 159 GVSCALSAVGDVGLVS 174
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 12/137 (8%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEME-----ERTVFTWSAMIQGLAIHGQAKEAL 66
+R + + L+ + G EGA R+ EM E V TW+ ++ GL G+A++A+
Sbjct: 82 QRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAV 141
Query: 67 TSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125
+ M G ++P+ L A G +G V G++ Y + C+V
Sbjct: 142 VALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLH-----GYAVKAGCRADACVVT 196
Query: 126 -LLSRAGFLQEAYEFIR 141
L+ G +A E +R
Sbjct: 197 ALIDMYGKCGQAAEVVR 213
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 360 bits (923), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 170/351 (48%), Positives = 250/351 (71%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y + N+ V N LI+MY +CG ++ A+ VF EM++R V T++ MI GL+++G+
Sbjct: 300 VHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGK 359
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+++A+ F M+ ++P VTF+G+L+AC H G VD G F+SM +Y + PQIEHYG
Sbjct: 360 SRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYG 419
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL R G L+EAY+ IR M + P+ ++ G LL C++HKN++L E+ +++L+
Sbjct: 420 CMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQA 479
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +V+LS++YA + +W++ A+VR M+ G++K PG SSI V+ +HEF+ GD HPQ
Sbjct: 480 DSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQ 539
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E+I++ E+L ++L+GY P VVL DIE+ EKE L HSE+LA+ +GL++T P T
Sbjct: 540 KERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLISTEPCT 599
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR+MKNLRVC DCH+A KLI++I R+IVVRDRNRFH F+ G+CSCGDYW
Sbjct: 600 MIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 650
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 35/191 (18%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFT------------- 48
VH + + GF N V ++++Y KCG L ARRVF EM E V +
Sbjct: 169 VHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLV 228
Query: 49 -----------------WSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHAC 91
W+AMI G + + AL +F M ++PN T + +L AC
Sbjct: 229 EEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSAC 288
Query: 92 GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP----IKP 147
+G ++ G R+ +S ++ I + ++++ SR G + EA M I
Sbjct: 289 SQLGALEIG-RWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITY 347
Query: 148 NGVVWGALLGG 158
N ++ G + G
Sbjct: 348 NTMISGLSMNG 358
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 27 KCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIG 86
KC ++ A R+F V+ ++A+I G G EA+ +++M+ I P+
Sbjct: 93 KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMAS 152
Query: 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP 144
+L ACG + EGR +S + G +++L + G L +A MP
Sbjct: 153 ILKACGSQLALREGRE-VHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMP 209
>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
Length = 865
Score = 360 bits (923), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 165/336 (49%), Positives = 230/336 (68%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V +L+DMY KCG +E A R+F +M R + W+AM+ GLA HG A+EA+ F M G
Sbjct: 530 VGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHG 589
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
I+P+ V+FIG+L AC H G E + +SM +YGI P+IEHY C+VD L RAG +QEA
Sbjct: 590 IEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEA 649
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
+ I MP K + + ALLG CR+ +++ + + +L L+P ++ +V+LSNIYA A
Sbjct: 650 DKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAA 709
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGM 256
RW+DV RK+M+ VKK PG+S I V ++H FV D +HPQA+ I+ E+++ +
Sbjct: 710 NRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTI 769
Query: 257 KLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCH 316
+ GY+P+T VLLD+E++EKE+ LY HSEKLA+ +GL++TP T IR++KNLRVC DCH
Sbjct: 770 REDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCH 829
Query: 317 AAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
A K IS++ REIV+RD NRFH F+ G CSCGDYW
Sbjct: 830 NAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 865
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 91/171 (53%), Gaps = 5/171 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ ++GF ++ V + ++DMY+KCG + A VF + W++MI G +G
Sbjct: 413 QIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNG 472
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+AL +++M + + P+ TF L+ A + +++GR+ ++ + +
Sbjct: 473 NEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQ-LHANVIKLDCVSDPFVG 531
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
+VD+ ++ G +++AY + M ++ N +W A+L G H N AEEA
Sbjct: 532 TSLVDMYAKCGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGN---AEEA 578
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 87/173 (50%), Gaps = 7/173 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + +SG ++ V N+L++MY K GC AR VF +M+ + +W++MI A
Sbjct: 307 QVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSS 366
Query: 61 QAKEALTSFNKMIEIGIKPN-----GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP 115
+E++ F ++ G+KP+ +T ACG + +D+G++ ++ + G
Sbjct: 367 LEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQ-IHAHAIKAGFDS 425
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
+ ++D+ + G + A + N P+ V W +++ GC + N D A
Sbjct: 426 DLHVNSGILDMYIKCGDMVNA-GIVFNYISAPDDVAWTSMISGCVDNGNEDQA 477
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 81/162 (50%), Gaps = 8/162 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y+ + G ++ V L+++Y KCG + AR +F M ER V W+ M++G G
Sbjct: 205 VHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGL 264
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVD-EGRRFFYSMTTEYGIIPQIEHY 120
KEA F++ G++P+ + +L+ C G D E + + + + G+ +
Sbjct: 265 EKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVA 324
Query: 121 GCMVDLLSRAG---FLQEAYEFIRNMPIKPNGVVWGALLGGC 159
+V++ S+ G F +E + ++++ + + W +++ C
Sbjct: 325 NSLVNMYSKMGCAYFAREVFNDMKHLDL----ISWNSMISSC 362
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 17/152 (11%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH-----GQAKEALTSFNK 71
+ N L+ MY KCG L AR+VF ER + TW+A++ A G A+E L F
Sbjct: 114 LSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRL 173
Query: 72 MIEIGIKPNGVTFIGLLHACGHMG--WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+ +T +L C + G W EG + + G+ + G +V++ S+
Sbjct: 174 LRASLGSTTRMTLAPVLKLCLNSGCLWAAEG---VHGYAIKIGLEWDVFVSGALVNIYSK 230
Query: 130 AGFLQEA---YEFIRNMPIKPNGVVWGALLGG 158
G +++A ++++R + V+W +L G
Sbjct: 231 CGRMRDARLLFDWMRERDV----VLWNMMLKG 258
>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g30700; AltName: Full=Protein DYW9
gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 792
Score = 359 bits (922), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 170/351 (48%), Positives = 224/351 (63%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+ + F +I V LI MY KCG + ARR+F M ++ TW+ MI G +HGQ
Sbjct: 442 VHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQ 501
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL F +M+ GI P VTF+ +L+AC H G V EG F SM YG P ++HY
Sbjct: 502 GQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYA 561
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+L RAG LQ A +FI M I+P VW LLG CR+HK+ +LA S +L +LDP
Sbjct: 562 CMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPD 621
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GYHV+LSNI++ + A VR+ + + K PG++ I + H F +GD++HPQ
Sbjct: 622 NVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQ 681
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I++ EKL M+ GY P T + L D+EE+E+E + HSE+LA+ FGL+ T PGT
Sbjct: 682 VKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGT 741
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC DCH KLIS+I R IVVRD NRFH F+ G CSCGDYW
Sbjct: 742 EIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 79/161 (49%), Gaps = 2/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y +S F + V L +Y K +E AR++F E E+++ +W+AMI G +G
Sbjct: 341 IHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGL 400
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++A++ F +M + PN VT +L AC +G + G ++ + + I
Sbjct: 401 TEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLG-KWVHDLVRSTDFESSIYVST 459
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++ + ++ G + EA ++ K N V W ++ G +H
Sbjct: 460 ALIGMYAKCGSIAEARRLF-DLMTKKNEVTWNTMISGYGLH 499
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/286 (18%), Positives = 115/286 (40%), Gaps = 43/286 (15%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++G + V I +Y KCG ++ +F E + + ++AMI G +G
Sbjct: 242 QIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNG 301
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM-------GWVDEGRRFFY-----SMT 108
+ + +L+ F +++ G + T + L+ GH+ G+ + + ++T
Sbjct: 302 ETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALT 361
Query: 109 TEYGIIPQIE---------------HYGCMVDLLSRAGFLQEAYEFIRNMP---IKPNGV 150
T Y + +IE + M+ ++ G ++A R M PN V
Sbjct: 362 TVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPV 421
Query: 151 VWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGY-HVVLSNIYAEAERWEDVARVRKLM 209
+L C + L + + D ++ Y L +YA + +A R+L
Sbjct: 422 TITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYA---KCGSIAEARRLF 478
Query: 210 RNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDG 255
+ K W+++ ++G H Q ++ ++ ++L+
Sbjct: 479 DLMTKKNEVTWNTM---------ISGYGLHGQGQEALNIFYEMLNS 515
Score = 44.3 bits (103), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 76/175 (43%), Gaps = 3/175 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G + + + ++ MY K +E AR+VF M E+ W+ MI G +
Sbjct: 141 IHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEM 200
Query: 62 AKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
E++ F +I E + + T + +L A + + G + +S+ T+ G
Sbjct: 201 YVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQ-IHSLATKTGCYSHDYVL 259
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
+ L S+ G ++ R KP+ V + A++ G + +L+ ++L
Sbjct: 260 TGFISLYSKCGKIKMGSALFREFR-KPDIVAYNAMIHGYTSNGETELSLSLFKEL 313
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 81/183 (44%), Gaps = 13/183 (7%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GFR +I + L G + AR +F+ ++ VF ++ +++G +++ +L+ F
Sbjct: 47 GFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVF 106
Query: 70 NKMIE-IGIKPNGVTFIGLLHACGHMGWVDE-GRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
+ + +KPN T+ + A G+ D+ R + G ++ +V +
Sbjct: 107 AHLRKSTDLKPNSSTYAFAISAAS--GFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMY 164
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNI--------DLAEEASRQLDQLD 179
+ +++A + MP K + ++W ++ G R ++ DL E+ +LD
Sbjct: 165 FKFWRVEDARKVFDRMPEK-DTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTT 223
Query: 180 PLN 182
L+
Sbjct: 224 LLD 226
>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 609
Score = 359 bits (922), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 168/354 (47%), Positives = 244/354 (68%), Gaps = 3/354 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME--ERTVFTWSAMIQGLAIH 59
+H Y ++ + N R+ LIDMY KCG LE A ++F +R V+ W+AMI G A+H
Sbjct: 256 MHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVH 315
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G++KEA+ F +M + PN VTF+ LL+AC H V+EGR +F SM + Y + P++EH
Sbjct: 316 GKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEH 375
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YGC+VDLL RAG L+EA E I +M + P+ +WGALL C++HK+ ++ E + + +LD
Sbjct: 376 YGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKIHKDAEMGERVGKIVKELD 435
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P + G HV+L+NIY+ W + +R+ + G KKTPG SSI ++G+ H+F+ GD +H
Sbjct: 436 PNHLGCHVLLANIYSLTGNWNEARTLREKIAESGKKKTPGCSSIELNGMFHQFLVGDRSH 495
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKE-KEKFLYRHSEKLALTFGLMNTP 298
PQ ++++ ++++ +K+ GYIP + VLLDI++ E +E L +HSEKLA+ FGLMNT
Sbjct: 496 PQTKQLYLFLDEMITKLKIAGYIPESGEVLLDIDDNEDRETALLKHSEKLAIAFGLMNTT 555
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P TPIRI+KNLRVC DCH A K IS++ +REI+VRDR R+H F+ G+CSC DYW
Sbjct: 556 PKTPIRIVKNLRVCSDCHLAIKFISKVYDREIIVRDRIRYHHFKDGTCSCNDYW 609
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 93/192 (48%), Gaps = 5/192 (2%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ N ++ Y + G ++ AR++F EM E+ V +W+ MI G G EAL F+ M
Sbjct: 166 RDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNM 225
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ G+ PN T L AC ++ +D+G R+ + + I ++D+ ++ G
Sbjct: 226 LAKGMSPNEYTLASSLAACANLVALDQG-RWMHVYIKKNNIQMNERLLAGLIDMYAKCGE 284
Query: 133 LQEAYEFIRNMP-IKPNGVVWGALLGGCRVHKNIDLAEEASRQL--DQLDPLNNGYHVVL 189
L+ A + + P +K W A++GG VH A E Q+ +++ P N V L
Sbjct: 285 LEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSP-NKVTFVAL 343
Query: 190 SNIYAEAERWED 201
N + R E+
Sbjct: 344 LNACSHGNRVEE 355
>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 167/345 (48%), Positives = 233/345 (67%), Gaps = 1/345 (0%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
++GF+ N L+ MY KCG +E A VF ++ E+ + +W+ MI G A HG KEAL
Sbjct: 433 KAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALA 492
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F M ++ IKP+ VT +G+L AC H G VD+G +F SM YGI +HY CM+DLL
Sbjct: 493 LFESM-KMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLL 551
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV 187
RAG L EA +++MP P+ WGALLG R+H + +L E+A+ ++ +++P N+G +V
Sbjct: 552 GRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYV 611
Query: 188 VLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQ 247
+LSN+YA + RW +V +R MR+ GVKK PG+S + + H F GD +HP+AE+I+
Sbjct: 612 LLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYA 671
Query: 248 MWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMK 307
E+L +K G++ +T +VL D+EE+EKE L HSEKLA+ FG+++ PPG PIR++K
Sbjct: 672 YLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIK 731
Query: 308 NLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
NLRVCEDCH A K IS+I R+I+VRD NRFH F GSCSCGDYW
Sbjct: 732 NLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 13/166 (7%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ N ++ YVK G L AR +F +M E+ V +W+AM+ G A +G +EA F++M
Sbjct: 120 RDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM 179
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ N +++ GLL A G +++ RR F S + +I + C++ R
Sbjct: 180 ----LVKNEISWNGLLSAYVQNGRIEDARRLFDS-----KMDWEIVSWNCLMGGYVRKKR 230
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
L +A MP++ + + W ++ G + L EA R ++L
Sbjct: 231 LDDARSLFDRMPVR-DKISWNIMITG---YAQNGLLSEARRLFEEL 272
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN NT++ Y +CG ++ A+ +F EM +R +W+AMI G A GQ++EAL F KM
Sbjct: 337 RNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKM 396
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
G N L +C + ++ G++ + + G ++ + + G
Sbjct: 397 KRDGGILNRSALACALSSCAEIAALELGKQ-LHGRLVKAGFQTGYIAGNALLAMYGKCGS 455
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++EA++ ++ K + V W ++ G H
Sbjct: 456 IEEAFDVFEDITEK-DIVSWNTMIAGYARH 484
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 111/248 (44%), Gaps = 22/248 (8%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
RR+ N +I Y+ + AR+VF +M +R + +W+ M+ G +G A FN+
Sbjct: 88 RRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQ 147
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M E + V++ +L G+V+E R+ F M + I + ++ + G
Sbjct: 148 MPEKDV----VSWNAMLSGFAQNGFVEEARKIFDQMLVKNEI-----SWNGLLSAYVQNG 198
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSN 191
+++A + + V W L+GG K +D A ++ D ++ ++++++
Sbjct: 199 RIEDARRLF-DSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKIS--WNIMITG 255
Query: 192 IYAEAERWEDVARVRKLMRNLGVKKTPGWSSITV----DGVVHEFVAGDETHPQAEKIFQ 247
YA+ ++ R+L L ++ W+++ +G++ E E P+ ++
Sbjct: 256 -YAQNGL---LSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEV-- 309
Query: 248 MWEKLLDG 255
W ++ G
Sbjct: 310 SWNAMIAG 317
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N +I Y + G L ARR+F E+ R VF W+AM+ G +G EA F +M E
Sbjct: 250 NIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPE---- 305
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
N V++ ++ +++ R F M + + MV ++ G + +A
Sbjct: 306 KNEVSWNAMIAGYVQSQQIEKARELFDQMPSR-----NTSSWNTMVTGYAQCGNIDQAKI 360
Query: 139 FIRNMPIKPNGVVWGALLGG 158
MP + + + W A++ G
Sbjct: 361 LFDEMP-QRDCISWAAMISG 379
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 108/268 (40%), Gaps = 32/268 (11%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N I Y++ G E A VF M R+ T++AMI G + + A F KM + +
Sbjct: 64 NRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLI 123
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
V G + G + R F M + + + M+ ++ GF++EA +
Sbjct: 124 SWNVMLSGYVKN----GNLSAARALFNQMPEK-----DVVSWNAMLSGFAQNGFVEEARK 174
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLD-QLDPLNNGYHVVLSNIYAEAE 197
M +K N + W LL + I E+A R D ++D ++ ++ Y +
Sbjct: 175 IFDQMLVK-NEISWNGLLSAYVQNGRI---EDARRLFDSKMDWEIVSWNCLMGG-YVRKK 229
Query: 198 RWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQ--------MW 249
R +D R L + V+ W +I + G A + +A ++F+ W
Sbjct: 230 RLDD---ARSLFDRMPVRDKISW-NIMITG-----YAQNGLLSEARRLFEELPIRDVFAW 280
Query: 250 EKLLDGMKLKGYIPNTSVVLLDIEEKEK 277
++ G G + + + ++ EK +
Sbjct: 281 TAMVSGFVQNGMLDEATRIFEEMPEKNE 308
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ ++ +V+ G L+ A R+F EM E+ +W+AMI G Q ++A F++M
Sbjct: 275 RDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQM 334
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE--HYGCMVDLLSRA 130
N ++ ++ G +D+ + F M PQ + + M+ +++
Sbjct: 335 ----PSRNTSSWNTMVTGYAQCGNIDQAKILFDEM-------PQRDCISWAAMISGYAQS 383
Query: 131 GFLQEAYEFIRNM 143
G +EA M
Sbjct: 384 GQSEEALHLFIKM 396
>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
Length = 987
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 166/353 (47%), Positives = 244/353 (69%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERT-VFTWSAMIQGLAIH 59
++H + +S +++ V N +I +Y + G + ARRVF ++ R TW++MI +A H
Sbjct: 635 QIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQH 694
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G ++A+ F +M+ +G+KP+ +T++G+L AC H G+VD+G+R++ M E+GI+PQ+ H
Sbjct: 695 GLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSH 754
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CMVDL +RAG L EA+EFI+ MP+ P+ VVWG+LL CRV KN DLAE A+ +L +D
Sbjct: 755 YACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSID 814
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N+G + L+N+Y+ RW D AR+ KL ++ GVKK G+S V G VH F A D H
Sbjct: 815 PHNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLH 874
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
PQ + I++ ++ + +K G++P+ + VL D++++ KE+ L RHSEKLA+ FGL++TP
Sbjct: 875 PQRDSIYRKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPE 934
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T +RIMKNLRVC DCH A K IS+ V+REI+VRD RFH F+ G CSC DYW
Sbjct: 935 KTTLRIMKNLRVCNDCHTAIKFISKFVDREIIVRDATRFHHFRDGYCSCKDYW 987
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 49/90 (54%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N+ L++ YVK G + AR +F M R V W+AMI G +GQ EA+ F MI
Sbjct: 547 NVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMI 606
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRF 103
IG +PN T +L AC + ++D G++
Sbjct: 607 LIGPEPNSHTLAAVLSACASLAYLDYGKQI 636
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 47/91 (51%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
RRN N+L+ +Y K G L A VF EM +R +W+ MI GL G+ +A+ +F
Sbjct: 278 RRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLD 337
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRR 102
M+ G P+ T +L +C M GR+
Sbjct: 338 MVSEGFAPSQFTLTNVLSSCAAMEACGVGRK 368
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + G + V N+++ MY KCG E AR VF M+ R+V +W+ M+ G
Sbjct: 368 KVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQG 427
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP 115
+ + A++ F M+E I V++ ++ G +FF M + + P
Sbjct: 428 RMELAVSMFENMVERSI----VSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEP 478
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 72/148 (48%), Gaps = 3/148 (2%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ N ++ +Y G +E A +F M ER++ +W+ +I G +G AL F++M
Sbjct: 411 RSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRM 470
Query: 73 IEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
+ ++P+ T +L AC ++ + G++ +S G+ + ++ +++G
Sbjct: 471 LSASSMEPDAFTVTSVLSACANLRMLKMGKQ-MHSYILRTGMPCSSQIMNALISTYAKSG 529
Query: 132 FLQEAYEFIRNMPIKP-NGVVWGALLGG 158
++ A + + N + + ALL G
Sbjct: 530 SVETARRIMDQAVVADLNVISFTALLEG 557
>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
Length = 936
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 238/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G ++ V N L +MY KCG +E ARR+F M R+ +W+ M+Q A HG+
Sbjct: 586 IHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGE 645
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++E L KM + G+K NG+TF+ +L +C H G + EG ++F+S+ + GI + EHYG
Sbjct: 646 SEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYG 705
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL RAG LQEA ++I MP++P V W +LLG CRV K++D + A+ +L +LDP
Sbjct: 706 CLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPG 765
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+ VVLSNIY+E W++ A++R+ M + VKK PG SSI V VHEF D +HP+
Sbjct: 766 NSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPR 825
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A +I+ E+L M+ GY+P+T +VL D++E++KE L HSEKLA+ FGL++TP +
Sbjct: 826 AAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPETS 885
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ I KNLRVCEDCH A K IS+I REIVVRD +RFH F+ GSCSC DYW
Sbjct: 886 SLHIFKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 936
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 93/176 (52%), Gaps = 2/176 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+ +SG + V +L++MY K G L+ A + EM+E+ + W+ +I G A+HG+
Sbjct: 485 VHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGR 544
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++EAL ++ K+ I + VTFI +L+AC + EG + +S E G+ +
Sbjct: 545 SREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEG-KMIHSNAVECGLDSDVIVKN 603
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
+ ++ S+ G ++ A +MPI+ + V W +L H + + R+++Q
Sbjct: 604 ALTNMYSKCGSMENARRIFDSMPIR-SAVSWNGMLQAYAQHGESEEVLKLIRKMEQ 658
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 118/271 (43%), Gaps = 22/271 (8%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V E +++ F ++ V LI MY +C E A +VF M++ + TWSA+I A HG
Sbjct: 283 VRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGH 342
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL F M + GI PN VTFI LL+ ++E R + + TE+G+
Sbjct: 343 CGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSR-IHLLITEHGLDDTTTMRN 401
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG---GCRVHKN-IDLAEEASRQLDQ 177
+V++ R +A + + PN + W +++G C H + + L +Q Q
Sbjct: 402 ALVNVYGRCESPDDARTVFDQLEL-PNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQ 460
Query: 178 LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDE 237
D +N + +L + R RKL+ + G S + +V+ + E
Sbjct: 461 PDRVN--FMTILGACTIGSH-----GRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGE 513
Query: 238 THPQAEKIFQ--------MWEKLLDGMKLKG 260
AE I Q W L++G L G
Sbjct: 514 LDV-AEVILQEMDEQQITAWNVLINGYALHG 543
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH S + GF +N V L++MY KCG L A+ VF EM E+ V TW+AM+ ++ G
Sbjct: 80 VHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGC 139
Query: 62 A-KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
K A+ F +M+ G+K N +TF+ +L++ + +G +F +S E +
Sbjct: 140 CWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKG-KFIHSCVRESEHSLDVFVN 198
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V+ ++ G L +A + MP + G W +++
Sbjct: 199 TALVNTYTKCGSLTDARKVFDGMPCRSVG-TWNSMISA 235
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Query: 24 MYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVT 83
MY +CG L A F ++ R V +W+ MI + + +EAL F+ M+ G+ PN +T
Sbjct: 1 MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60
Query: 84 FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM 143
+ +L++CG + +G ++++ E G ++++ + G L +A M
Sbjct: 61 LVAVLNSCGSFRELRDG-ILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEM 119
Query: 144 PIKPNGVVWGALLG 157
K N V W A+LG
Sbjct: 120 AEK-NVVTWNAMLG 132
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 100/217 (46%), Gaps = 3/217 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +S ++ V L++ Y KCG L AR+VF M R+V TW++MI +I +
Sbjct: 182 IHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISER 241
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ EA F +M + G + + VTF+ +L AC + + G+ S+ +E +
Sbjct: 242 SGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESI-SETSFELDLFVGT 300
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
++ + +R ++A + M + N + W A++ H + A R + Q L
Sbjct: 301 ALITMYARCRSPEDAAQVFGRMK-QTNLITWSAIITAFADHGHCGEALRYFRMMQQEGIL 359
Query: 182 -NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKT 217
N + L N + E+++R+ L+ G+ T
Sbjct: 360 PNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDT 396
>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
Length = 643
Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 171/352 (48%), Positives = 230/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y GF N+ + ++LIDMY KCG + A +F +M V +W+AMI G A+HG
Sbjct: 292 QLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHG 351
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A+EAL F +M KPN +TF+ +L AC H G VD+G ++F SM+ YGI+P +EH+
Sbjct: 352 PAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHF 411
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+ D L RAG L EAY FI M IKP VW LL CRVHKN LAEE ++++ +L+P
Sbjct: 412 AALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEP 471
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ G HVVLSN+Y+ + RW + A +R+ MR G+KK P S I V +H FVA D +HP
Sbjct: 472 RSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHDRSHP 531
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++I + M +G++PNT V DIEE+ K L HSEKLA+ FG+++TP G
Sbjct: 532 WYDRIIDALNAFSEQMAREGHVPNTEDVFQDIEEEHKSYVLCGHSEKLAIVFGIISTPAG 591
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IR+MKNLRVC DCH K IS++ +REIVVRD NRFH F+ G+CSCGD+W
Sbjct: 592 TKIRVMKNLRVCIDCHTVTKFISKLADREIVVRDANRFHHFKDGNCSCGDFW 643
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 85/161 (52%), Gaps = 2/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++ ++GF ++ V ++LIDMY C + + +VF + R W++++ G A +G
Sbjct: 192 VHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGS 251
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL F +M++ G++P VTF L+ CG++ + G++ ++ G +
Sbjct: 252 VEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQ-LHAYVICGGFEDNVFISS 310
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ + G + A+ M P+ V W A++ G +H
Sbjct: 311 SLIDMYCKCGEISIAHCIFDKMS-SPDVVSWTAMIMGYALH 350
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 81/195 (41%), Gaps = 21/195 (10%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGC-------------------LEGARRVFIEME 42
+H + +SG + N L+++Y K C E R+VF EM
Sbjct: 72 LHALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMI 131
Query: 43 ERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRR 102
ER V +W+ ++ G A G+ EAL KM G +P+ T +L V G
Sbjct: 132 ERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLE 191
Query: 103 FFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ G + ++D+ + + + N+P++ + ++W +LL GC +
Sbjct: 192 -VHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR-DHILWNSLLAGCAQN 249
Query: 163 KNIDLAEEASRQLDQ 177
+++ A R++ Q
Sbjct: 250 GSVEEALGIFRRMLQ 264
>gi|302805647|ref|XP_002984574.1| hypothetical protein SELMODRAFT_120669 [Selaginella moellendorffii]
gi|300147556|gb|EFJ14219.1| hypothetical protein SELMODRAFT_120669 [Selaginella moellendorffii]
Length = 369
Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 177/353 (50%), Positives = 227/353 (64%), Gaps = 2/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH + G + V ++DMY KCGCL+ A F +E +W+AM+ A HG
Sbjct: 18 RVHAIARDHGVDSEVAVATAIVDMYSKCGCLDEAVEAFARIERHDTVSWTAMLAAFAQHG 77
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
AL +F +M E G KPN VTF+ LL AC H G V+EGR++F MT YGI P +HY
Sbjct: 78 HIDRALATFQRMQEQGHKPNYVTFVHLLSACSHKGLVEEGRKYFDLMTARYGIAPDAQHY 137
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE-ASRQLDQLD 179
CMVDLL RAG+L EA F+ MP P+ V +LL CR +K++D E A R L+
Sbjct: 138 ACMVDLLGRAGYLDEAEGFLNRMPGAPHAAVLKSLLSACRSYKDVDRGERIAKRMLESFW 197
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
+ Y VVL++IY A +WE+ AR+R LM GV+K PG S+I V+G V EFVAGD +H
Sbjct: 198 DESMPY-VVLASIYRAAGKWEEAARIRSLMVERGVRKDPGRSAIEVEGRVFEFVAGDMSH 256
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
Q I ++L MK GY+P+TS+VL D+ E+EKE+ L HSEKLA+ FGL+NTP
Sbjct: 257 VQMNPIRAKLQELSSAMKKAGYVPDTSLVLHDVAEEEKEQVLLWHSEKLAVAFGLLNTPA 316
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G+PIR++KNLRVC+DCH A KLIS I R IV RD +RFH F+ G CSCGDYW
Sbjct: 317 GSPIRVIKNLRVCKDCHDAAKLISAIEQRRIVFRDLSRFHHFENGVCSCGDYW 369
>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g40405
gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 165/351 (47%), Positives = 245/351 (69%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H Y ++ + +R+ TL+D+Y KCG +E A VF MEE+ V+TWS+ + GLA++G
Sbjct: 262 AHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGF 321
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++ L F+ M + G+ PN VTF+ +L C +G+VDEG+R F SM E+GI PQ+EHYG
Sbjct: 322 GEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYG 381
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDL +RAG L++A I+ MP+KP+ VW +LL R++KN++L AS+++ +L+
Sbjct: 382 CLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETA 441
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +V+LSNIYA++ W++V+ VR+ M++ GV+K PG S + V+G VHEF GD++HP+
Sbjct: 442 NHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPK 501
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I +W+ + ++L GY +T+ V+ DI+E+EKE L HSEK A+ FG+M+
Sbjct: 502 YTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDV 561
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVC DCH +IS+I NREI+VRDRNRFH F+ G CSC +W
Sbjct: 562 PIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 102/234 (43%), Gaps = 46/234 (19%)
Query: 17 VCNT-LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEI 75
VC T ++ +CG + AR++F M ER W+AMI G A G+++EAL F+ M
Sbjct: 175 VCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLE 234
Query: 76 GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE 135
G+K NGV I +L AC +G +D+G R+ +S I + +VDL ++ G +++
Sbjct: 235 GVKVNGVAMISVLSACTQLGALDQG-RWAHSYIERNKIKITVRLATTLVDLYAKCGDMEK 293
Query: 136 AYEFIRNMP----------------------------------IKPNGVVWGALLGGCRV 161
A E M + PN V + ++L GC V
Sbjct: 294 AMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSV 353
Query: 162 HKNIDLAEEASRQLDQL------DPLNNGYHVVLSNIYAEAERWEDVARVRKLM 209
+ +E R D + +P Y L ++YA A R ED + + M
Sbjct: 354 ---VGFVDEGQRHFDSMRNEFGIEPQLEHYG-CLVDLYARAGRLEDAVSIIQQM 403
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 170/351 (48%), Positives = 250/351 (71%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y + N+ V N LI+MY +CG ++ A+ VF EM++R V T++ MI GL+++G+
Sbjct: 264 VHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGK 323
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+++A+ F M+ ++P VTF+G+L+AC H G VD G F+SM +Y + PQIEHYG
Sbjct: 324 SRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYG 383
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL R G L+EAY+ IR M + P+ ++ G LL C++HKN++L E+ +++L+
Sbjct: 384 CMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQA 443
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +V+LS++YA + +W++ A+VR M+ G++K PG SSI V+ +HEF+ GD HPQ
Sbjct: 444 DSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQ 503
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E+I++ E+L ++L+GY P VVL DIE+ EKE L HSE+LA+ +GL++T P T
Sbjct: 504 KERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLISTEPCT 563
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR+MKNLRVC DCH+A KLI++I R+IVVRDRNRFH F+ G+CSCGDYW
Sbjct: 564 MIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 614
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 9/165 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTV----FTWSAMIQGLA 57
VH + + GF N V ++++Y KCG L ARRVF EM E V W+AMI G
Sbjct: 159 VHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFV 218
Query: 58 IHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
+ + AL +F M ++PN T + +L AC +G ++ G R+ +S ++ I +
Sbjct: 219 RNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIG-RWVHSYMRKFEIELNL 277
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMP----IKPNGVVWGALLGG 158
++++ SR G + EA M I N ++ G + G
Sbjct: 278 FVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNG 322
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 4/165 (2%)
Query: 27 KCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIG 86
KC ++ A R+F V+ ++A+I G G EA+ +++M+ I P+
Sbjct: 83 KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMAS 142
Query: 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP-- 144
+L ACG + EGR +S + G +++L + G L +A MP
Sbjct: 143 ILKACGSQLALREGRE-VHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPED 201
Query: 145 -IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVV 188
+ + V W A++ G ++ + A EA R + + N + +V
Sbjct: 202 VVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIV 246
>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 167/351 (47%), Positives = 240/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + ++GF + +V N L+DMYVKCG AR +F + + + TW+ MI G +HG
Sbjct: 221 VHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGF 280
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+T+FN+M + GI+P+ V+FI +L+AC H G +DEG RFF M E + P++EHY
Sbjct: 281 GNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYA 340
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL+R+G L AY+FI++MPI+P+ +WGALL GCR+H ++ LAE+ + + +L+P
Sbjct: 341 CIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPE 400
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+V+L+N YAEAE+WE+V ++R+ + G+KK PG S I V VH F+AG+ +HPQ
Sbjct: 401 NTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQ 460
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A+KI + ++L MK +GY P T L++ + +KE L HSEKLA+ FG++N PP
Sbjct: 461 AKKIEVLLKRLRSKMKEEGYFPKTRYALINADSLQKETALCGHSEKLAMAFGILNLPPAR 520
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR+ KNLRVC DCH K IS+ + REIV+RD NRFH F+ G C C +W
Sbjct: 521 TIRVSKNLRVCGDCHEMAKFISKTLGREIVLRDSNRFHHFKDGVCCCRGFW 571
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 79/141 (56%), Gaps = 2/141 (1%)
Query: 18 CNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGI 77
CNTL+DMY KCG L+GA VF M RTV TW+++I A G + EA+ F++M G+
Sbjct: 36 CNTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGV 95
Query: 78 KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAY 137
P+ T +LHAC G ++ G+ ++ E + I ++D+ ++ G +++A
Sbjct: 96 SPDIFTITTVLHACACNGSLENGKD-VHNYIRENDMQSNIFVCNALMDMYAKCGSMEDAN 154
Query: 138 EFIRNMPIKPNGVVWGALLGG 158
MP+K + + W ++GG
Sbjct: 155 SVFLEMPVK-DIISWNTMIGG 174
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y ++ + NI VCN L+DMY KCG +E A VF+EM + + +W+ MI G + +
Sbjct: 121 VHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSL 180
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL+ F M+ + +KP+G T +L AC + +D G+ + G +
Sbjct: 181 PNEALSLFGDMV-LEMKPDGTTLACILPACASLASLDRGKE-VHGHILRNGFFSDQQVAN 238
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ + G A +P K + + W ++ G +H
Sbjct: 239 ALVDMYVKCGVPVLARLLFDMIPTK-DLITWTVMIAGYGMH 278
>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 607
Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 165/339 (48%), Positives = 243/339 (71%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
NI V +L+DMYVKCGC++ A +F +ME+R T+SAMI G A+HG+ + AL F++MI
Sbjct: 269 NIIVKTSLVDMYVKCGCIDNALHIFQKMEKRNNLTYSAMISGFALHGEGESALRMFSEMI 328
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
+ G++P+ V ++ LL+AC H G V EGRR F M E + P EHYGC+VDLL RAG L
Sbjct: 329 KEGLEPDHVVYVSLLNACSHSGLVKEGRRVFGEMLKEGKVEPTAEHYGCLVDLLGRAGLL 388
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIY 193
+EA E I+++PI+ N VVW + L CRVH+NI+L + A+++L +L N G ++++SN+Y
Sbjct: 389 EEALETIQSIPIEQNDVVWRSFLSQCRVHQNIELGQIAAQELLKLCSHNPGDYLLISNMY 448
Query: 194 AEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLL 253
++A W+DVAR R + G+K+TPG+S++ V G H FV+ D +HPQ ++I++M ++
Sbjct: 449 SQAHMWDDVARSRTEIAIKGLKQTPGFSTVKVKGKTHRFVSQDRSHPQCKEIYKMLHQME 508
Query: 254 DGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCE 313
+K +GY P+ + +LL+++E+EK++ L HS+K+A+ F L+ TPPG+ I+I +NLR+C
Sbjct: 509 WQLKFEGYSPDLTQILLNVDEEEKKERLKGHSQKVAIAFALLYTPPGSIIKIARNLRMCS 568
Query: 314 DCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
DCH K IS I REIVVRDRNRFH F+ G+CSC DYW
Sbjct: 569 DCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 607
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G ++ V N+LI+MY +CG +E + VF ++E ++ +WS+M G
Sbjct: 154 QIHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAASWSSMFSACVGMG 213
Query: 61 QAKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRR---FFYSMTTEYGIIPQ 116
E L F +M E +K + L AC + G ++ G F +E II +
Sbjct: 214 MWSECLMLFREMCRETNLKAEESGMVSALSACANTGALNLGMSIHGFLLRNISELNIIVK 273
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ + G + A + M K N + + A++ G +H
Sbjct: 274 TS----LVDMYVKCGCIDNALHIFQKME-KRNNLTYSAMISGFALH 314
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH 93
A +F +++ F + MI+G + AL +N+M+E GI+P+ T+ LL AC
Sbjct: 86 AASIFRGIDDPCTFDFKTMIRGYVNEMSFEVALCFYNEMMERGIEPDNFTYPCLLKACTR 145
Query: 94 MGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWG 153
+ + EG++ + + G+ + ++++ R G ++ + + K + W
Sbjct: 146 LKAIREGKQ-IHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFK-SAASWS 203
Query: 154 ALLGGC 159
++ C
Sbjct: 204 SMFSAC 209
>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 760
Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 163/351 (46%), Positives = 237/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H ++ + N+ V + LIDMY KCG + ++ VF M + + W++++ G ++HG+
Sbjct: 410 THGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGK 469
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AKE ++ F ++ +KP+ ++F LL ACG +G DEG ++F M+ EYGI P++EHY
Sbjct: 470 AKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYS 529
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMV+LL RAG LQEAY+ I+ MP +P+ VWGALL CR+ N+DLAE A+ +L L+P
Sbjct: 530 CMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPE 589
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V+LSNIYA W +V +R M +LG+KK PG S I V V+ +AGD++HPQ
Sbjct: 590 NPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQ 649
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I + +++ M+ G+ PN L D+EE+E+E+ L+ HSEKLA+ FGL+NTP GT
Sbjct: 650 IDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGT 709
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P++++KNLR+C DCHA K IS REI +RD NRFH F+ G CSCGD+W
Sbjct: 710 PLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 6/150 (4%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERT----VFTWSAMIQGLAIHGQAKEALTSFNKM 72
VCN I + G ++ A +F +E+T V +W+++I G A +G+ EAL F +M
Sbjct: 320 VCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREM 379
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
G+KPN VT +L ACG++ + GR + ++ + ++D+ ++ G
Sbjct: 380 QVAGVKPNHVTIPSMLPACGNIAALGHGRS-THGFAVRVHLLDNVHVGSALIDMYAKCGR 438
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ + MP K N V W +L+ G +H
Sbjct: 439 INLSQIVFNMMPTK-NLVCWNSLMNGFSMH 467
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 77/184 (41%), Gaps = 37/184 (20%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEME----ERTVFTWSAMIQGLAIHGQAKEALTS 68
+++ C+ L+ Y + GCLE R+ EME E + +W+ ++ G G KEA+
Sbjct: 180 KDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVM 239
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE------------------ 110
F K+ +G P+ VT +L + G ++ GR + +
Sbjct: 240 FQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGK 299
Query: 111 ----YGIIPQIEHYGCM--------VDLLSRAGFLQEA---YEFIRNMPIKPNGVVWGAL 155
YGII + M + LSR G + +A +E + ++ N V W ++
Sbjct: 300 SGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSI 359
Query: 156 LGGC 159
+ GC
Sbjct: 360 IAGC 363
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S SG + V ++ MY++CG + AR+VF M ++ V T SA++ A G
Sbjct: 137 QIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKG 196
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF 104
+E + ++M GI+ N V++ G+L G+ E F
Sbjct: 197 CLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMF 240
>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
Length = 662
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 171/352 (48%), Positives = 237/352 (67%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H++ + RN+ V +L+ MY KCG L A ++F EM R V W+AMI G A HG
Sbjct: 311 QIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHG 370
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
KEA+ F +M + G++PN +TF+ +L AC H G D G R F M YGI P+++HY
Sbjct: 371 DGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHY 430
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG L+ A + IR+MP +P+ +G LL CRV+KN++ AE A+ +L + DP
Sbjct: 431 SCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDP 490
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ G +V L+NIYA A +W+DV+RVR+ M++ V KTPG+S I + GV+HEF + D HP
Sbjct: 491 QSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHP 550
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q I + +L + MK GY+P+ VL D++E K + L RHSEKLA++FGL++T PG
Sbjct: 551 QLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPG 610
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+RI KNLRVC DCH A K+IS+I +REI++RD RFH F+ G CSCGDYW
Sbjct: 611 MTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 662
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 130/311 (41%), Gaps = 33/311 (10%)
Query: 26 VKCGCLEGARRVFIEMEERTVFTWSAMIQGLA-IHGQAKEALTSFNKMIEIGIKPNGVTF 84
V+ G L GA F +T T++ ++ G A G+ +A F+++ P+ V++
Sbjct: 77 VRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIP----TPDAVSY 132
Query: 85 IGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP 144
LL G D RR F SM + + + MV LS++G ++EA MP
Sbjct: 133 NTLLSCHFASGDADGARRLFASMP-----VRDVVSWNTMVSGLSKSGAVEEAKAVFLAMP 187
Query: 145 IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVAR 204
++ N V W A++ G +++ AEE R + G V+ + + + +V +
Sbjct: 188 VR-NSVSWNAMVSGFACSRDMSAAEEWFRNAPE-----KGDAVLWTAMVSGYMDIGNVVK 241
Query: 205 VRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPN 264
+ + V+ W+++ VAG + A+ +++ ++ ++
Sbjct: 242 AIEYFEAMPVRNLVSWNAV---------VAGYVKNSHADDALRLFRTMVREANVQPNAST 292
Query: 265 TSVVLLDIEEKEKEKF---LYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAAFKL 321
S VLL F +++ KL L+ N GT + M C D +A KL
Sbjct: 293 LSSVLLGCSNLSALGFGKQIHQWCMKLPLS---RNLTVGTSLVSMYC--KCGDLSSACKL 347
Query: 322 ISEIVNREIVV 332
E+ R++V
Sbjct: 348 FGEMHTRDVVA 358
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 15/143 (10%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NTL+ + G +GARR+F M R V +W+ M+ GL+ G +EA F + + ++
Sbjct: 133 NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVF---LAMPVR 189
Query: 79 PNGVTFIGLLH--ACGH-MGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE 135
N V++ ++ AC M +E ++ E G + MV G + +
Sbjct: 190 -NSVSWNAMVSGFACSRDMSAAEE----WFRNAPEKG---DAVLWTAMVSGYMDIGNVVK 241
Query: 136 AYEFIRNMPIKPNGVVWGALLGG 158
A E+ MP++ N V W A++ G
Sbjct: 242 AIEYFEAMPVR-NLVSWNAVVAG 263
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 104/258 (40%), Gaps = 31/258 (12%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ NT++ K G +E A+ VF+ M R +W+AM+ G A A F
Sbjct: 158 RDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNA 217
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E G + V + ++ +G V + +F +M + + + +V +
Sbjct: 218 PEKG---DAVLWTAMVSGYMDIGNVVKAIEYFEAMP-----VRNLVSWNAVVAGYVKNSH 269
Query: 133 LQEAYEFIRNM----PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV- 187
+A R M ++PN ++L GC + ++ + +L PL+ V
Sbjct: 270 ADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKL-PLSRNLTVG 328
Query: 188 -VLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIF 246
L ++Y + D++ KL + + W+++ ++G H ++
Sbjct: 329 TSLVSMYCKC---GDLSSACKLFGEMHTRDVVAWNAM---------ISGYAQHGDGKEAI 376
Query: 247 QMWEKLLDGMKLKGYIPN 264
++E+ MK +G PN
Sbjct: 377 NLFER----MKDEGVEPN 390
>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Brachypodium distachyon]
Length = 877
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 169/352 (48%), Positives = 231/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + F ++ N L+ Y KCG +E A F + E+ V +WSAMI GLA HG
Sbjct: 526 QVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHG 585
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
K AL F++M++ I PN +T +L AC H G VDE +R+F SM +GI EHY
Sbjct: 586 HGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHY 645
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DLL RAG L +A E + +MP + N VWGALL RVH++ +L A+ +L L+P
Sbjct: 646 ACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEP 705
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+G HV+L+N YA A W+DVA+VRKLM++ VKK P S + + VH F+ GD++HP
Sbjct: 706 EKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVHTFIVGDKSHP 765
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+A I+ ++L D M GY+PN V L D+++ EKE L HSE+LA+ F L++TP G
Sbjct: 766 RARDIYAKLDELGDLMTKAGYVPNVEVDLHDVDKNEKELLLSHHSERLAVAFALISTPAG 825
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLR+C DCHAAFK IS+IV+REI++RD NRFH F+ G+CSC DYW
Sbjct: 826 APIRVKKNLRICRDCHAAFKFISDIVSREIIIRDINRFHHFRDGACSCRDYW 877
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 2/159 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH ++G+ +++ N L+DMY K G + A VF ++ E V +W+A I G +HG
Sbjct: 223 KVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHG 282
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ AL +M G+ PN T +L AC G + GR+ M +
Sbjct: 283 HDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAF 342
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
G +VD+ ++ G L +A + +P + + V+W AL+ GC
Sbjct: 343 G-LVDMYAKHGLLDDAKKVFDWIP-QRDLVLWNALISGC 379
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 4/163 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + GF + V N LID Y KC CL A RVF + + +++MI L+
Sbjct: 425 QVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCD 484
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++A+ F +M+ G+ P+ LL+AC + ++G++ ++ + + +
Sbjct: 485 HGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQ-VHAHLIKRQFMSDVFAG 543
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV-WGALLGGCRVH 162
+V ++ G +++A +P K GVV W A++GG H
Sbjct: 544 NALVYTYAKCGSIEDADLAFSGLPEK--GVVSWSAMIGGLAQH 584
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 118/276 (42%), Gaps = 32/276 (11%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIH 59
++H + +G +I V N L+ MY G ++ AR VF E ER +W+ ++ +
Sbjct: 121 QLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKN 180
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+ A+ F +M+ G++PN F +++AC ++ GR+ ++M G +
Sbjct: 181 DRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRK-VHAMVIRTGYDKDVFT 239
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
+VD+ S+ G ++ A +P + + V W A + GC +H + A E Q+
Sbjct: 240 ANALVDMYSKLGDIRMAAVVFGKVP-ETDVVSWNAFISGCVLHGHDQHALELLLQMKSSG 298
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVA---GD 236
+ N + LS+I +K G + + +H F+ D
Sbjct: 299 LVPNVF--TLSSI---------------------LKACAGSGAFNLGRQIHGFMVKANAD 335
Query: 237 ETHPQAEKIFQMWEK---LLDGMKLKGYIPNTSVVL 269
+ A + M+ K L D K+ +IP +VL
Sbjct: 336 SDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVL 371
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 66/137 (48%), Gaps = 1/137 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++ + + L+DMY K G L+ A++VF + +R + W+A+I G +
Sbjct: 324 QIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGA 383
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q EAL+ F +M + G N T +L + + + + R+ +++ + G +
Sbjct: 384 QHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQ-VHALAEKLGFLSDSHVV 442
Query: 121 GCMVDLLSRAGFLQEAY 137
++D + L AY
Sbjct: 443 NGLIDSYWKCDCLNYAY 459
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 6/157 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + +SG R N L+ Y KC ARRVF E+ + +WS+++ + +
Sbjct: 26 IHAHLLKSGLFAVFR--NHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSNNAM 83
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL +F M ++ N +L G+ + +++ G+ I
Sbjct: 84 PRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAGFGTQ----LHALAMATGLGGDIFVAN 139
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V + GF+ EA + N V W L+
Sbjct: 140 ALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSA 176
>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 725
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 170/357 (47%), Positives = 242/357 (67%), Gaps = 6/357 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y++ +G + + N LI+MY KCG L+ AR VF +M R V +WS+MI A+HG+
Sbjct: 369 VHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGE 428
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A ++L+ F +M + ++PN VTF+G+L+ C H G V+EG++ F SMT EY I P+IEHYG
Sbjct: 429 ASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYG 488
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL RA L+EA E I +MP+ PN V+WG+L+ CRVH ++L E A++++ +L+P
Sbjct: 489 CMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKLEPD 548
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G V++SNIYA RW+ V +R +M V K G S I ++G HEF+ GD+ H Q
Sbjct: 549 HDGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDKRHKQ 608
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ +I+ +++ +KL GY+P+ VL+D+EE+EK+ + HSEKLAL FGLMN
Sbjct: 609 SNEIYTKLYEVVSKLKLAGYVPDGGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNKEKEE 668
Query: 302 P------IRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVCEDCHA FKL+S++ EI+VRDR RFH ++ G CSC DYW
Sbjct: 669 EKGSCGVIRIVKNLRVCEDCHAFFKLVSKVYELEIIVRDRTRFHRYKDGLCSCRDYW 725
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 5/195 (2%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
L+DMY CG + AR VF EM +R V TW+ MI+ G EA F +M + + P+
Sbjct: 155 LMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPD 214
Query: 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFI 140
+ ++ ACG G + R Y E + +V + + AG + A EF
Sbjct: 215 EMILCNIVSACGRTGNMRYNRA-IYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFF 273
Query: 141 RNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWE 200
R M ++ N V A++ G +D +A DQ + + + + YAE++ +
Sbjct: 274 RKMSVR-NLFVSTAMVSGYSKAGRLD---DARVIFDQTEMKDLVCWTTMISAYAESDHPQ 329
Query: 201 DVARVRKLMRNLGVK 215
+ RV + M G+K
Sbjct: 330 EALRVFEEMCCSGIK 344
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 77/150 (51%), Gaps = 2/150 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ V ++ Y K G L+ AR +F + E + + W+ MI A +EAL F +M
Sbjct: 279 RNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEM 338
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
GIKP+ VT + ++ AC ++G +D+ ++ + T G+ + ++++ ++ G
Sbjct: 339 CCSGIKPDVVTMLSVISACVNLGTLDKA-KWVHRYTHLNGLESVLPIDNALINMYAKCGG 397
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
L A + MP + N V W +++ +H
Sbjct: 398 LDAARDVFEKMPTR-NVVSWSSMINAFAMH 426
>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
Length = 649
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 171/351 (48%), Positives = 239/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V Y ++ G + + V N LIDMY KCG +E A VF +M R FTW+A+I GLA++G
Sbjct: 299 VRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGY 358
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA+ F++MI + P+ VTFIG+L AC H G VD+GR FF SM Y I P + HYG
Sbjct: 359 GEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYG 418
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C++DL RAG + EA + I MP+ PN +WG LL CRVH N ++ E + +L Q+DP
Sbjct: 419 CIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPE 478
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+ + +LSNIYA+ RWEDV R+R + G+KK PG S I ++G++HEFVAGD++HP
Sbjct: 479 NSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMNGIIHEFVAGDQSHPM 538
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I+ E +++ + GY P+ + V +++ E+EK+K L+ HSEKLA+ F L+++ P T
Sbjct: 539 SKEIYCKLESIINDLNNVGYFPDVTEVFVEVAEEEKQKVLFWHSEKLAIAFALLSSEPNT 598
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLR+C DCH A KLIS + RE+VVRDR RFH F+ G CSC DYW
Sbjct: 599 VIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 649
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 82/193 (42%), Gaps = 33/193 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGA-------------------------- 34
+VH SG ++RV N L+DMY +C +E A
Sbjct: 166 QVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLG 225
Query: 35 -----RRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH 89
R +F M ER +W+AMI G + +EAL F +M + + T + ++
Sbjct: 226 RVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVIT 285
Query: 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNG 149
AC +G ++ G M+ + GI ++D+ S+ G ++ A + ++M + +
Sbjct: 286 ACAQLGALEMGEWVRVYMSRQ-GIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHR-DK 343
Query: 150 VVWGALLGGCRVH 162
W A++ G V+
Sbjct: 344 FTWTAIILGLAVN 356
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 6/210 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + G RN V +L+ Y G AR + E E T W+A+I G +
Sbjct: 65 VHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRR 124
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGH-MGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA SF M G P VT++ +L ACG G V G + + G++P +
Sbjct: 125 FGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQ-VHGRVVGSGVLPDLRVE 183
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+VD+ + ++ A++ M ++ + V W +LL G +D A + ++ + D
Sbjct: 184 NALVDMYAECADMESAWKLFDGMQVR-SVVSWTSLLSGLTRLGRVDEARDLFGRMPERDT 242
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMR 210
++ + + Y +A R+ + + + M+
Sbjct: 243 VS---WTAMIDGYVQAARFREALEMFREMQ 269
>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
Length = 814
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 172/357 (48%), Positives = 235/357 (65%), Gaps = 6/357 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ ++ + V + L+DMY KCGCL ARRVF +M R V TW+ +I +HG+
Sbjct: 458 IHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGK 517
Query: 62 AKEALTSFNKMIEIG-----IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ 116
KE+L F M+ G +KP VTFI L +C H G VDEG F+ M E+GI P
Sbjct: 518 GKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPA 577
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGV-VWGALLGGCRVHKNIDLAEEASRQL 175
+HY C+VDL+ RAG ++EAY + MP + V W +LLG CR++ NI++ E A+ L
Sbjct: 578 PDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAENL 637
Query: 176 DQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAG 235
QL P ++V+LSNIY+ A W+ +R+ M+ +GVKK PG S I VH+F+AG
Sbjct: 638 LQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVHKFLAG 697
Query: 236 DETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLM 295
D +HPQ+EK+ E L + +K +GY+P+T+ VL DI+E+EKE L HSEKLA+ FG++
Sbjct: 698 DLSHPQSEKLHDFLETLSERLKKEGYVPDTACVLHDIDEEEKETILCGHSEKLAIAFGIL 757
Query: 296 NTPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
NTPPGT IR+ KNLRVC DCH A K IS+I +REI++RD RFH F+ G+CSCGDYW
Sbjct: 758 NTPPGTTIRVAKNLRVCNDCHTASKFISKIEDREIILRDARRFHHFKDGTCSCGDYW 814
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/285 (20%), Positives = 119/285 (41%), Gaps = 30/285 (10%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + G N + N LIDMY + G ++ ++R+F ME+R + +W+ +I I G+
Sbjct: 341 IHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGR 400
Query: 62 AKEALT----------------SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFY 105
+ +AL +N ++ KPN +T + +L C + + +G+ +
Sbjct: 401 SSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKE-IH 459
Query: 106 SMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH--- 162
+ + Q+ +VD+ ++ G L A MPI+ N + W ++ +H
Sbjct: 460 AYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIR-NVITWNVIIMAYGMHGKG 518
Query: 163 -KNIDLAEEA---SRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTP 218
++++L E+ + ++ P + + ++ E ++ K+ G++ P
Sbjct: 519 KESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAP 578
Query: 219 GWSSITVD-----GVVHEFVAGDETHPQAEKIFQMWEKLLDGMKL 258
+ VD G V E T P W LL ++
Sbjct: 579 DHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRI 623
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 73/141 (51%), Gaps = 3/141 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N L+ MY K G L+ A+ + + E+R + TW++MI + + + EAL M+ G+K
Sbjct: 154 NALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVK 213
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAY 137
P+GVTF +L AC H+ + G+ Y++ T+ +I +VD+ G ++
Sbjct: 214 PDGVTFASVLPACSHLDLLRTGKEIHAYALRTD-DVIENSFVGSALVDMYCNCGQVESGR 272
Query: 138 EFIRNMPIKPNGVVWGALLGG 158
++ + G +W A++ G
Sbjct: 273 LVFDSVLDRKIG-LWNAMIAG 292
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 79/193 (40%), Gaps = 35/193 (18%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H + G ++ + NTL++MY KCG L A +VF + ER +W+++I L +
Sbjct: 34 AHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYKVFDRITERDQVSWNSIISALCRFEE 93
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM--------------------GWVDEGR 101
+ A+ +F M+ G +P+ T + + AC ++ W
Sbjct: 94 WEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKGHWRTFSN 153
Query: 102 RFFYSMTTEYGIIPQIEH------------YGCMVDLLSRAGFLQEAYEFIRNM---PIK 146
+M + G + + + M+ S+ EA F+R M +K
Sbjct: 154 NALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVK 213
Query: 147 PNGVVWGALLGGC 159
P+GV + ++L C
Sbjct: 214 PDGVTFASVLPAC 226
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM- 72
N V + L+DMY CG +E R VF + +R + W+AMI G A ++AL F +M
Sbjct: 251 NSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEME 310
Query: 73 IEIGIKPNGVTFIGLLHA 90
G+ N T ++ A
Sbjct: 311 AAAGLYSNATTMSSIVPA 328
>gi|297737119|emb|CBI26320.3| unnamed protein product [Vitis vinifera]
Length = 522
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 173/350 (49%), Positives = 236/350 (67%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H Y + + N V LIDMY KCGCL+ A ++F ++ R ++AMI G AIHG
Sbjct: 173 HVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYG 232
Query: 63 KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC 122
+AL F KM G+ P+ VT + + +C H+G V+EG F SM YG+ P++EHYGC
Sbjct: 233 HQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGC 292
Query: 123 MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182
+VDLL RAG L+EA E + NMP+KPN V+W +LLG RVH N+++ E + L QL+P
Sbjct: 293 LVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPET 352
Query: 183 NGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQA 242
+G +V+LSN+YA RW+DV RVRKLM++ G+ K PG S + V G +HEF+ GD+THP++
Sbjct: 353 SGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRS 412
Query: 243 EKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTP 302
++I+ E++ + G+ P T VL DIEE+EKE L HSE+LA+ F L+ + P
Sbjct: 413 KEIYLKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAP 472
Query: 303 IRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC DCH + KLIS+I REI+VRDRNRFH F+ G+CSC DYW
Sbjct: 473 IRIIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 522
>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 802
Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 162/353 (45%), Positives = 240/353 (67%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERT-VFTWSAMIQGLAIH 59
++H + +S ++ V N+++ MY + G L ARRVF + R TW++MI LA H
Sbjct: 450 QIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQH 509
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G ++A+ F +M+ +G+KP+ +TF+G+L AC H+G+VDEG+R+F + ++GI+P++ H
Sbjct: 510 GLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSH 569
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CMVDLL+RAG EA EFI+ MP++P+ + WG+LL CRVHKN DLAE A+ +L +D
Sbjct: 570 YACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSID 629
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N+G + LSN+Y+ RW D A++ K ++ VKK G+S + VH F A D H
Sbjct: 630 PGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLH 689
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
PQ + +++ K+ D +K G++P+ VL D++++ KE+ L RHSEKLA+ FGL++TP
Sbjct: 690 PQRDTVYRTAAKMWDDIKKAGFVPDLQSVLHDVDDELKEEMLSRHSEKLAIAFGLVSTPE 749
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T +RIMKNLRVC DCH A K IS++ +REI++RD RFH F+ G CSC DYW
Sbjct: 750 KTTLRIMKNLRVCNDCHTAIKFISKVADREIILRDATRFHHFKDGFCSCKDYW 802
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+RN+ N+L+ +Y K G L AR VF EM ER +W+ M+ GL G+ EA+ F
Sbjct: 93 QRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLD 152
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M+ G+ P T +L +C GR+ +S + G+ + ++++ + G
Sbjct: 153 MVTDGLSPTQFTLTNVLSSCAATEARGVGRK-VHSFVVKLGLSSCVPVANSVLNMYGKCG 211
Query: 132 FLQEAYEFIRNMP 144
+ A MP
Sbjct: 212 DAETARAVFERMP 224
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 82/199 (41%), Gaps = 37/199 (18%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N+ L++ YVK G ++ AR +F M R V W+AMI G +G EA+ F MI
Sbjct: 362 NVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMI 421
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRF------------------FYSMTTEYGIIP 115
G +PN T +L C + ++ G++ +M G +P
Sbjct: 422 RSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLP 481
Query: 116 -------------QIEHYGCMVDLLSRAGFLQEA---YEFIRNMPIKPNGVVWGALLGGC 159
+ + M+ L++ G ++A +E + + +KP+ + + +L C
Sbjct: 482 WARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSAC 541
Query: 160 RVHKNIDLAEEASRQLDQL 178
++ +E R QL
Sbjct: 542 ---THVGFVDEGKRYFQQL 557
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 36/192 (18%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAM-------- 52
+VH + + G + V N++++MY KCG E AR VF M ER+V +W+AM
Sbjct: 183 KVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLG 242
Query: 53 -----------------------IQGLAIHGQAKEALTSFNKMIEIG-IKPNGVTFIGLL 88
I G +G +AL F++M+ + P+ T +L
Sbjct: 243 RMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVL 302
Query: 89 HACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKP 147
AC ++G V G++ Y + + I Q+ + ++ + +++G ++ A ++ +
Sbjct: 303 SACANLGMVSIGKQVHAYILRSRMPYIGQVTN--ALISMYAKSGSVENARGVMQQAVMAD 360
Query: 148 -NGVVWGALLGG 158
N + + ALL G
Sbjct: 361 LNVISFTALLEG 372
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGC-----LEGARRVFIEM--EERTVFTWSAMIQ 54
+H + ++G + +CN L+ Y ARR+F E+ +R VFTW++++
Sbjct: 45 IHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDEIPAAQRNVFTWNSLLS 104
Query: 55 GLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGII 114
A G+ +A F +M E V +GL +G E + F M T+ G+
Sbjct: 105 LYAKSGRLADARAVFAEMPERDPVSWTVMVVGL----NRVGRFGEAIKMFLDMVTD-GLS 159
Query: 115 P 115
P
Sbjct: 160 P 160
>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Glycine max]
Length = 780
Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 173/352 (49%), Positives = 243/352 (69%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++ + ++ V N+LIDMY KCG ++ AR F +M+++ +W+A+I G +IHG
Sbjct: 429 QIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHG 488
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL F+ M + KPN +TF+G+L AC + G +D+GR F SM +YGI P IEHY
Sbjct: 489 LGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHY 548
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMV LL R+G EA + I +P +P+ +VW ALLG C +HKN+DL + ++++ +++P
Sbjct: 549 TCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEP 608
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ HV+LSN+YA A+RW++VA VRK M+ VKK PG S + GVVH F GD +HP
Sbjct: 609 QDDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHP 668
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ IF M E L + GY+P+ SVVLLD+E+ EKE+ L+ HSE+LAL FGL+ P G
Sbjct: 669 NIKLIFAMLEWLYKKTRDAGYVPDCSVVLLDVEDDEKERLLWMHSERLALAFGLIQIPSG 728
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLR+C DCHA KL+S+IV REIV+RD NRFH F+ G CSCGDYW
Sbjct: 729 CSIRIIKNLRICVDCHAVIKLVSKIVQREIVIRDINRFHHFRQGVCSCGDYW 780
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 88/183 (48%), Gaps = 5/183 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G N+ V N L+D+Y KCG +E + ++F E+ W+ +I G G
Sbjct: 328 QIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLG 387
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++AL F+ M+ + I+P VT+ +L A + ++ GR+ +S+T +
Sbjct: 388 DGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQ-IHSLTIKTMYNKDSVVA 446
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
++D+ ++ G + +A M K + V W AL+ G +H L EA D +
Sbjct: 447 NSLIDMYAKCGRIDDARLTFDKMD-KQDEVSWNALICGYSIHG---LGMEALNLFDMMQQ 502
Query: 181 LNN 183
N+
Sbjct: 503 SNS 505
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 78/158 (49%), Gaps = 3/158 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + + R++ V L+++Y K G + A++ F EM + + WS MI A +
Sbjct: 227 VHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDK 286
Query: 62 AKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+KEAL F +M + + PN TF +L AC + ++ G + +S + G+ +
Sbjct: 287 SKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQ-IHSCVLKVGLDSNVFVS 345
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ ++ G ++ + + + N V W ++ G
Sbjct: 346 NALMDVYAKCGEIENSVKLFTG-STEKNEVAWNTIIVG 382
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y + G + + V LID Y CG ++ AR+VF + + + +W+ M+ A +
Sbjct: 126 VHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYC 185
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR-------RFFYSMTTEYGII 114
+++L F +M +G +PN T L +C + G+ + Y GI
Sbjct: 186 HEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGI- 244
Query: 115 PQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
+++L +++G + EA +F MP K + + W ++
Sbjct: 245 -------ALLELYTKSGEIAEAQQFFEEMP-KDDLIPWSLMIS 279
>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 809
Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 233/351 (66%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ +N+ V L+DMY KCG + AR +F M ER V TW+AMI G HG
Sbjct: 460 IHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGI 519
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K AL F +M + I+PNGVTF+ ++ AC H G V+ G + F+ M Y I P ++HYG
Sbjct: 520 GKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYG 579
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
MVDLL RAG L EA++FI MP+KP V+GA+LG C++HKN++ AE+ + +L +L+P
Sbjct: 580 AMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLFELNPE 639
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ GYHV+L+NIY A WE V +VR M G++KTPG S + + VH F +G HP
Sbjct: 640 DGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPS 699
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++KI+ EKL+ +K GY+P+T+++ L +E+ KE+ L HSEKLA++FGL+NT GT
Sbjct: 700 SKKIYAFLEKLICQIKEAGYVPDTNLI-LGLEDDVKEQLLSSHSEKLAISFGLLNTTAGT 758
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I + KNLRVC DCH A K IS + REI+VRD RFH F+ G+CSCGDYW
Sbjct: 759 TIHVRKNLRVCADCHNATKYISLVTGREIIVRDMQRFHHFKNGACSCGDYW 809
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 83/157 (52%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ ++GF + + L+DMY KCG L+ AR +F M ER V +W++MI +
Sbjct: 258 IHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNEN 317
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA+ F KM++ G+KP V+ +G LHAC +G ++ G RF + ++ E + +
Sbjct: 318 PKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERG-RFIHKLSVELELDRNVSVVN 376
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + + + A + + V W A++ G
Sbjct: 377 SLISMYCKCKEVDTAASMFGKLQSR-TIVSWNAMILG 412
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 84/161 (52%), Gaps = 2/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ S + RN+ V N+LI MY KC ++ A +F +++ RT+ +W+AMI G A +G+
Sbjct: 359 IHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGR 418
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL F++M +KP+ T++ ++ A + + ++ + + + +
Sbjct: 419 PIEALNYFSQMQARTVKPDTFTYVSVITAIAELS-ITHHAKWIHGVVMRNCLDKNVFVTT 477
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ ++ G + A I +M + + W A++ G H
Sbjct: 478 ALVDMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDGYGTH 517
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 79/156 (50%), Gaps = 4/156 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +SGF ++ L +MY KC + AR+VF M ER + +W+ ++ G + +G
Sbjct: 157 IHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGM 216
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHY 120
A+ AL N M E +KP+ +T + +L A + + G+ Y+M + + I
Sbjct: 217 ARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIA-- 274
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
+VD+ ++ G L+ A M ++ N V W +++
Sbjct: 275 TALVDMYAKCGSLKTARLLFDGM-LERNVVSWNSMI 309
>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 613
Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 171/352 (48%), Positives = 237/352 (67%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H++ + RN+ V +L+ MY KCG L A ++F EM R V W+AMI G A HG
Sbjct: 262 QIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHG 321
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
KEA+ F +M + G++PN +TF+ +L AC H G D G R F M YGI P+++HY
Sbjct: 322 DGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHY 381
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG L+ A + IR+MP +P+ +G LL CRV+KN++ AE A+ +L + DP
Sbjct: 382 SCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDP 441
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ G +V L+NIYA A +W+DV+RVR+ M++ V KTPG+S I + GV+HEF + D HP
Sbjct: 442 QSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHP 501
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q I + +L + MK GY+P+ VL D++E K + L RHSEKLA++FGL++T PG
Sbjct: 502 QLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPG 561
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+RI KNLRVC DCH A K+IS+I +REI++RD RFH F+ G CSCGDYW
Sbjct: 562 MTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 613
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 130/311 (41%), Gaps = 33/311 (10%)
Query: 26 VKCGCLEGARRVFIEMEERTVFTWSAMIQGLA-IHGQAKEALTSFNKMIEIGIKPNGVTF 84
V+ G L GA F +T T++ ++ G A G+ +A F+++ P+ V++
Sbjct: 28 VRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIP----TPDAVSY 83
Query: 85 IGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP 144
LL G D RR F SM + + + MV LS++G ++EA MP
Sbjct: 84 NTLLSCHFASGDADGARRLFASMP-----VRDVVSWNTMVSGLSKSGAVEEAKAVFLAMP 138
Query: 145 IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVAR 204
++ N V W A++ G +++ AEE R + G V+ + + + +V +
Sbjct: 139 VR-NSVSWNAMVSGFACSRDMSAAEEWFRNAPE-----KGDAVLWTAMVSGYMDIGNVVK 192
Query: 205 VRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPN 264
+ + V+ W+++ VAG + A+ +++ ++ ++
Sbjct: 193 AIEYFEAMPVRNLVSWNAV---------VAGYVKNSHADDALRLFRTMVREANVQPNAST 243
Query: 265 TSVVLLDIEEKEKEKF---LYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAAFKL 321
S VLL F +++ KL L+ N GT + M C D +A KL
Sbjct: 244 LSSVLLGCSNLSALGFGKQIHQWCMKLPLS---RNLTVGTSLVSMYC--KCGDLSSACKL 298
Query: 322 ISEIVNREIVV 332
E+ R++V
Sbjct: 299 FGEMHTRDVVA 309
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 121/279 (43%), Gaps = 54/279 (19%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NTL+ + G +GARR+F M R V +W+ M+ GL+ G +EA F + + ++
Sbjct: 84 NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVF---LAMPVR 140
Query: 79 PNGVTFIGLLH--ACGH-MGWVDEGRR---------FFYSMTTEY----GIIPQIEHYGC 122
N V++ ++ AC M +E R + +M + Y ++ IE++
Sbjct: 141 -NSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEA 199
Query: 123 MV--DLLS----RAGFLQEAYE---------FIRNMPIKPNGVVWGALLGGCRVHKNIDL 167
M +L+S AG+++ ++ +R ++PN ++L GC +
Sbjct: 200 MPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGF 259
Query: 168 AEEASRQLDQLDPLNNGYHV--VLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITV 225
++ + +L PL+ V L ++Y + D++ KL + + W+++
Sbjct: 260 GKQIHQWCMKL-PLSRNLTVGTSLVSMYCKC---GDLSSACKLFGEMHTRDVVAWNAM-- 313
Query: 226 DGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPN 264
++G H ++ ++E+ MK +G PN
Sbjct: 314 -------ISGYAQHGDGKEAINLFER----MKDEGVEPN 341
>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 828
Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 164/351 (46%), Positives = 240/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
++ Y ++ ++++ L+DM+ +CG A RVF ME+R V W+A I+ A+ G
Sbjct: 478 IYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGN 537
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AK A+ F++M++ +K + F+ LL A H G+VD+GR+ F++M +G+ PQI HYG
Sbjct: 538 AKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYG 597
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L+EA++ +++MPIKPN V+WG+ L CR HKN++ A A ++ QL P
Sbjct: 598 CMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLAPE 657
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
G HV+LSNIYA A +W DVARVR M+ G +K G SSI V G++ EF +GDE+H +
Sbjct: 658 KVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDESHTE 717
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I M +++ + GY+P+T+ VL+D++E+EKE L RHSEKLA+ +GL+NT G
Sbjct: 718 NAQIGLMLQEINCRISQVGYVPDTTNVLVDVDEQEKEHLLSRHSEKLAMAYGLINTGKGI 777
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR++KNLR+C DCH+ KL+S++ REI VRD NR+H F+ G CSC D+W
Sbjct: 778 PIRVVKNLRMCSDCHSFAKLVSKLYGREITVRDNNRYHFFKEGFCSCRDFW 828
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 93/178 (52%), Gaps = 5/178 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + G +++ V N+LI Y CG ++ R+VF EM ER V +W+++I G ++
Sbjct: 143 QVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVN 202
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
AKEA+ F +M+E+G++PN VT + + AC + ++ G++ ++ TE G+
Sbjct: 203 MAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKK-VCNLMTELGVKSNTLVV 261
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++D+ + G + E K N V++ ++ H LA E LD++
Sbjct: 262 NALLDMYMKCGDMYAVREIFDEFSDK-NLVMYNTIMSNYVQH---GLAGEVLVVLDEM 315
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 92/207 (44%), Gaps = 37/207 (17%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H Y ++G R + N +IDMY+KCG E A +VF M +TV TW+++I GL G+
Sbjct: 347 HAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGEL 406
Query: 63 KEALTSFNKMIEI-------------------------------GIKPNGVTFIGLLHAC 91
+ AL F +M E GIK + VT +G+ AC
Sbjct: 407 ELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASAC 466
Query: 92 GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV 151
G++G +D ++ Y+ + I ++ +VD+ SR G A NM K +
Sbjct: 467 GYLGALDLA-KWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENME-KRDVSA 524
Query: 152 WGALLGGCRVHKN----IDLAEEASRQ 174
W A + V N I+L +E +Q
Sbjct: 525 WTAAIRVKAVEGNAKGAIELFDEMLKQ 551
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 98/215 (45%), Gaps = 5/215 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+V + G + N V N L+DMY+KCG + R +F E ++ + ++ ++ HG
Sbjct: 244 KVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHG 303
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A E L ++M++ G +P+ VT + + AC +G + G+ ++ G+
Sbjct: 304 LAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKS-SHAYVFRNGLERLDNIS 362
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
++D+ + G + A + +M K V W +L+ G ++L A R ++
Sbjct: 363 NAIIDMYMKCGKREAACKVFDSMSNK-TVVTWNSLIAGLVRDGELEL---ALRIFGEMPE 418
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVK 215
N + +A +E+ + + M+N G+K
Sbjct: 419 SNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIK 453
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 11/167 (6%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEG---ARRVFIEME--ERTVFTWSAMIQGLAIHGQAKEA 65
++ + N LI V+ G E A F E E + +++T + +I+G A G KEA
Sbjct: 46 LKKGVFNINKLIAACVQMGTHESLNYALNAFKEDEGTKCSLYTCNTLIRGYAASGLCKEA 105
Query: 66 LTSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMV 124
+ + MI + GI P+ TF LL AC + EG + + + + G++ + ++
Sbjct: 106 IFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQ-VHGVVVKMGLVKDLFVANSLI 164
Query: 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
+ G + + M ++ N V W +L+ G V +++A+EA
Sbjct: 165 HFYAACGKVDLGRKVFDEM-LERNVVSWTSLINGYSV---VNMAKEA 207
>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Glycine max]
Length = 824
Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 173/339 (51%), Positives = 229/339 (67%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ V LIDMY KCG LE A +F E+ + T W+A+I L IHG ++AL F M
Sbjct: 486 DVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMR 545
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
G+K + +TF+ LL AC H G VDE + F +M EY I P ++HYGCMVDL RAG+L
Sbjct: 546 ADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYL 605
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIY 193
++AY + NMPI+ + +WG LL CR+H N +L AS +L ++D N GY+V+LSNIY
Sbjct: 606 EKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNIY 665
Query: 194 AEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLL 253
A +WE +VR L R+ G++KTPGWSS+ V VV F AG+++HPQ +I++ L
Sbjct: 666 ANVGKWEGAVKVRSLARDRGLRKTPGWSSVVVGSVVEVFYAGNQSHPQCAEIYEELRVLN 725
Query: 254 DGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCE 313
MK GY+P+ S VL D+EE EKE+ L HSE+LA+ FG+++TPP +PIRI KNLRVC
Sbjct: 726 AKMKSLGYVPDYSFVLQDVEEDEKEEILTSHSERLAIVFGIISTPPKSPIRIFKNLRVCG 785
Query: 314 DCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
DCH A K IS+I REI+VRD NRFH F+ G CSCGDYW
Sbjct: 786 DCHNATKYISKITEREIIVRDSNRFHHFKDGICSCGDYW 824
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
+I + N L++MY K G ++ AR VF ++ R V +W+ +I G A +G A EA+ ++N M
Sbjct: 384 DIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMME 443
Query: 74 E-IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E I PN T++ +L A H+G + +G + + + + + C++D+ + G
Sbjct: 444 EGRTIVPNQGTWVSILPAYSHVGALQQGMK-IHGRLIKNCLFLDVFVATCLIDMYGKCGR 502
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
L++A +P + V W A++ +H
Sbjct: 503 LEDAMSLFYEIP-QETSVPWNAIISSLGIH 531
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + GF ++ V +LI +Y + G +E A +VF++M R V +W+AMI G +G
Sbjct: 168 KMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNG 227
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL ++M +K + VT +L C V G + ++G+ +
Sbjct: 228 NVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDV-VGGVLVHLYVIKHGLESDVFVS 286
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++++ S+ G LQ+A M ++ + V W +++
Sbjct: 287 NALINMYSKFGRLQDAQRVFDGMEVR-DLVSWNSIIAA 323
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 87/187 (46%), Gaps = 7/187 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y + G ++ V N LI+MY K G L+ A+RVF ME R + +W+++I +
Sbjct: 270 VHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDD 329
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AL F +M+ +G++P+ +T + L G + GR + + I
Sbjct: 330 PVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGN 389
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+V++ ++ G + A +P + + + W L+ G + LA EA +D + +
Sbjct: 390 ALVNMYAKLGSIDCARAVFEQLPSR-DVISWNTLITG---YAQNGLASEA---IDAYNMM 442
Query: 182 NNGYHVV 188
G +V
Sbjct: 443 EEGRTIV 449
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 85/170 (50%), Gaps = 9/170 (5%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G +++ + L+ +Y G L + F ++ + +F+W++M+ G+ ++++
Sbjct: 78 GKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRYRDSMDCV 137
Query: 70 NKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
+++ + G++P+ TF +L AC + ++ + M E+ + ++ L S
Sbjct: 138 TELLSLSGVRPDFYTFPPVLKACLSLADGEKMHCWVLKMGFEHDVYVA----ASLIHLYS 193
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
R G ++ A++ +MP++ G W A++ G + N+ EA R LD++
Sbjct: 194 RFGAVEVAHKVFVDMPVRDVG-SWNAMISGFCQNGNV---AEALRVLDRM 239
>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Cucumis sativus]
Length = 1573
Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 169/337 (50%), Positives = 228/337 (67%), Gaps = 1/337 (0%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V +L+DMY KCG ++ A RVF +M+ R V W+AM+ GLA HG EAL F M G
Sbjct: 1237 VGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNG 1296
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
I+P+ VTFIG+L AC H G E ++F +M YGI P+IEHY C+VD L RAG +QEA
Sbjct: 1297 IQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEA 1356
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
I +MP K + ++ ALLG CR + + A+ + +L LDP ++ +V+LSNIYA +
Sbjct: 1357 ENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAAS 1416
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGM 256
+W+DV R +M+ VKK PG+S I V VH FV D +HPQA I++ E L+ +
Sbjct: 1417 RQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRI 1476
Query: 257 KLKG-YIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDC 315
+ +G Y+P+T LLD+EE+EKE+ LY HSEKLA+ FGL++TPP IR++KNLRVC DC
Sbjct: 1477 REEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDC 1536
Query: 316 HAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
H+A K IS++ REIV+RD NRFH F+ G+CSCGDYW
Sbjct: 1537 HSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 106/211 (50%), Gaps = 13/211 (6%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++ Y+ + GF ++ V + ++DMY+KCG + A +F E+ W+ MI G +G
Sbjct: 1120 QIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENG 1179
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
AL+ ++ M G++P+ TF L+ A + +++G++ ++ + ++H+
Sbjct: 1180 DEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVK---LDYSLDHF 1236
Query: 121 --GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR--QLD 176
+VD+ + G +Q+AY R M ++ V W A+L G H ++D A R Q +
Sbjct: 1237 VGTSLVDMYCKCGSVQDAYRVFRKMDVR-KVVFWNAMLLGLAQHGHVDEALNLFRTMQSN 1295
Query: 177 QLDPLNNGYHVVL-----SNIYAEAERWEDV 202
+ P + VL S +++EA ++ D
Sbjct: 1296 GIQPDKVTFIGVLSACSHSGLFSEAYKYFDA 1326
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 9/163 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +S F + V N+L++MY K G + A + FI E + +W+ MI A +
Sbjct: 915 QIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNN 974
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF-----FYSMTTEYGIIP 115
EA+ +F ++ G+KP+ T +L AC DEG F + + GII
Sbjct: 975 LEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEGEYFTLGSQVHVYAIKCGIIN 1031
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++DL S+ G + EA EF+ + + W A++ G
Sbjct: 1032 DSFVSTALIDLYSKGGKMDEA-EFLLHGKYDFDLASWNAIMFG 1073
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 76/158 (48%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y+ + G + V LID+Y K G ++ A + + + +W+A++ G
Sbjct: 1019 QVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSN 1078
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++++AL F+ M E+GI + +T + A G + + +G++ + + G +
Sbjct: 1079 KSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQ-IQAYAIKLGFNNDLWVS 1137
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ + G + A E + +P+ V W ++ G
Sbjct: 1138 SGVLDMYIKCGDMPNALELFGEIS-RPDEVAWTTMISG 1174
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 7/161 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R H SG + + N LI MY KCG L AR+VF + +R + TW++++ A
Sbjct: 632 RAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFA 691
Query: 61 QAK-----EALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP 115
+ E F + E G +T LL C G+V + + + G
Sbjct: 692 DSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFV-QVSETVHGYAVKIGFEL 750
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
+ G +V++ + G + +A MP + + V+W +L
Sbjct: 751 DLFVSGALVNIYCKYGLVGQARLLFDKMPER-DAVLWNVML 790
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y+ + GF ++ V L+++Y K G + AR +F +M ER W+ M++ +
Sbjct: 739 VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798
Query: 62 AKEALTSFNKMIEIGIKPN 80
EAL F+ G P+
Sbjct: 799 QDEALRFFSAFHRSGFFPD 817
>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 1573
Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 169/337 (50%), Positives = 228/337 (67%), Gaps = 1/337 (0%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V +L+DMY KCG ++ A RVF +M+ R V W+AM+ GLA HG EAL F M G
Sbjct: 1237 VGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNG 1296
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
I+P+ VTFIG+L AC H G E ++F +M YGI P+IEHY C+VD L RAG +QEA
Sbjct: 1297 IQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEA 1356
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
I +MP K + ++ ALLG CR + + A+ + +L LDP ++ +V+LSNIYA +
Sbjct: 1357 ENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAAS 1416
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGM 256
+W+DV R +M+ VKK PG+S I V VH FV D +HPQA I++ E L+ +
Sbjct: 1417 RQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRI 1476
Query: 257 KLKG-YIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDC 315
+ +G Y+P+T LLD+EE+EKE+ LY HSEKLA+ FGL++TPP IR++KNLRVC DC
Sbjct: 1477 REEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDC 1536
Query: 316 HAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
H+A K IS++ REIV+RD NRFH F+ G+CSCGDYW
Sbjct: 1537 HSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 106/211 (50%), Gaps = 13/211 (6%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++ Y+ + GF ++ V + ++DMY+KCG + A +F E+ W+ MI G +G
Sbjct: 1120 QIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENG 1179
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
AL+ ++ M G++P+ TF L+ A + +++G++ ++ + ++H+
Sbjct: 1180 DEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVK---LDYSLDHF 1236
Query: 121 --GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR--QLD 176
+VD+ + G +Q+AY R M ++ V W A+L G H ++D A R Q +
Sbjct: 1237 VGTSLVDMYCKCGSVQDAYRVFRKMDVR-KVVFWNAMLLGLAQHGHVDEALNLFRTMQSN 1295
Query: 177 QLDPLNNGYHVVL-----SNIYAEAERWEDV 202
+ P + VL S +++EA ++ D
Sbjct: 1296 GIQPDKVTFIGVLSACSHSGLFSEAYKYFDA 1326
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 9/163 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +S F + V N+L++MY K G + A + FI E + +W+ MI A +
Sbjct: 915 QIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNN 974
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF-----FYSMTTEYGIIP 115
EA+ +F ++ G+KP+ T +L AC DEG F + + GII
Sbjct: 975 LEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEGEYFTLGSQVHVYAIKCGIIN 1031
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++DL S+ G + EA EF+ + + W A++ G
Sbjct: 1032 DSFVSTALIDLYSKGGKMDEA-EFLLHGKYDFDLASWNAIMFG 1073
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 76/158 (48%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y+ + G + V LID+Y K G ++ A + + + +W+A++ G
Sbjct: 1019 QVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSN 1078
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++++AL F+ M E+GI + +T + A G + + +G++ + + G +
Sbjct: 1079 KSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQ-IQAYAIKLGFNNDLWVS 1137
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ + G + A E + +P+ V W ++ G
Sbjct: 1138 SGVLDMYIKCGDMPNALELFGEIS-RPDEVAWTTMISG 1174
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 7/161 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R H SG + + N LI MY KCG L AR+VF + +R + TW++++ A
Sbjct: 632 RAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFA 691
Query: 61 QAK-----EALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP 115
+ E F + E G +T LL C G+V + + + G
Sbjct: 692 DSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFV-QVSETVHGYAVKIGFEL 750
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
+ G +V++ + G + +A MP + + V+W +L
Sbjct: 751 DLFVSGALVNIYCKYGLVGQARLLFDKMPER-DAVLWNVML 790
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y+ + GF ++ V L+++Y K G + AR +F +M ER W+ M++ +
Sbjct: 739 VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798
Query: 62 AKEALTSFNKMIEIGIKPN 80
EAL F+ G P+
Sbjct: 799 QDEALRFFSAFHRSGFXPD 817
>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Vitis vinifera]
Length = 590
Score = 358 bits (918), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 173/350 (49%), Positives = 236/350 (67%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H Y + + N V LIDMY KCGCL+ A ++F ++ R ++AMI G AIHG
Sbjct: 241 HVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYG 300
Query: 63 KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC 122
+AL F KM G+ P+ VT + + +C H+G V+EG F SM YG+ P++EHYGC
Sbjct: 301 HQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGC 360
Query: 123 MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182
+VDLL RAG L+EA E + NMP+KPN V+W +LLG RVH N+++ E + L QL+P
Sbjct: 361 LVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPET 420
Query: 183 NGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQA 242
+G +V+LSN+YA RW+DV RVRKLM++ G+ K PG S + V G +HEF+ GD+THP++
Sbjct: 421 SGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRS 480
Query: 243 EKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTP 302
++I+ E++ + G+ P T VL DIEE+EKE L HSE+LA+ F L+ + P
Sbjct: 481 KEIYLKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAP 540
Query: 303 IRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC DCH + KLIS+I REI+VRDRNRFH F+ G+CSC DYW
Sbjct: 541 IRIIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 590
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 14/153 (9%)
Query: 20 TLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA--------KEALTSFNK 71
L++ Y KCG + R +F ++ + + +W++++ + A E LT F +
Sbjct: 149 ALLNYYAKCGKVGACRYLFNQISKPDLASWNSILSAYVHNSGAICEDVSLSLEVLTLFIE 208
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY--GCMVDLLSR 129
M + IK N VT + L+ AC +G + +G + + ++ + ++ H+ ++D+ S+
Sbjct: 209 MQKSLIKANEVTLVALISACAELGALSQG-AWAHVYVLKHNL--KLNHFVGTALIDMYSK 265
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
G L A + +P + + + + A++GG +H
Sbjct: 266 CGCLDLACQLFDQLPHR-DTLCYNAMIGGFAIH 297
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 8/149 (5%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLA-IHGQAKEALTSFNKMI-EIGIKPNGVTFIGLLHAC 91
A +F + T+F ++ +I LA I A + +++++ +KPNG TF L AC
Sbjct: 59 ALSIFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKAC 118
Query: 92 GHMGWVDEGRRFFYSMTT--EYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNG 149
G W+ GR + E P ++ +++ ++ G + A ++ N KP+
Sbjct: 119 GSQPWLRHGRALHTHVLKFLEPTCDPFVQ--AALLNYYAKCGKVG-ACRYLFNQISKPDL 175
Query: 150 VVWGALLGGCRVHKNIDLAEEASRQLDQL 178
W ++L VH + + E+ S L+ L
Sbjct: 176 ASWNSILSA-YVHNSGAICEDVSLSLEVL 203
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 358 bits (918), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 166/345 (48%), Positives = 231/345 (66%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
++G+ + V N LIDMYVKCG L AR +F + E+ + TW+ MI G +HG EA+
Sbjct: 883 RNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIA 942
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
+F KM GIKP+ +TF +L+AC H G ++EG FF SM +E + P++EHY CMVDLL
Sbjct: 943 TFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLL 1002
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV 187
+R G L +AY I MPIKP+ +WGALL GCR+H +++LAE+ + + +L+P N GY+V
Sbjct: 1003 ARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYV 1062
Query: 188 VLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQ 247
+L+NIYAEAE+WE+V ++R+ + G+KK+PG S I V G FV+ D HPQA+ IF
Sbjct: 1063 LLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIFS 1122
Query: 248 MWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMK 307
+ L MK +G+ P L++ + EKE L HSEKLA+ FG++N P G IR+ K
Sbjct: 1123 LLNNLRIKMKNEGHSPKMRYALINAGDMEKEVALCGHSEKLAMAFGILNLPSGRTIRVAK 1182
Query: 308 NLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
NLRVC+DCH K +S+ REI++RD NRFH F+ G CSC D+W
Sbjct: 1183 NLRVCDDCHEMAKFMSKTTRREIILRDSNRFHHFKDGFCSCRDFW 1227
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 83/157 (52%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ F R + NTL+DMY KCG L A + F +M ++TV +W+++I G
Sbjct: 676 LHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGL 735
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+A+ F +M G+ P+ + +LHAC +D+GR ++ + + +
Sbjct: 736 YDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRD-VHNYIRKNNMALCLPVSN 794
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ ++ G ++EAY +P+K + V W ++GG
Sbjct: 795 ALMDMYAKCGSMEEAYLVFSQIPVK-DIVSWNTMIGG 830
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y ++ + V N L+DMY KCG +E A VF ++ + + +W+ MI G + +
Sbjct: 777 VHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSL 836
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL F +M + +P+G+T LL ACG + ++ GR + G ++
Sbjct: 837 PNEALKLFAEM-QKESRPDGITMACLLPACGSLAALEIGRG-IHGCILRNGYSSELHVAN 894
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ + G L A +P K + + W ++ GC +H
Sbjct: 895 ALIDMYVKCGSLVHARLLFDMIPEK-DLITWTVMISGCGMH 934
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 78/158 (49%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H + GF V N+LI Y K G ++ A ++F E+ +R V +W++MI G ++G
Sbjct: 574 RIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNG 633
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ AL F +M+ + + + T + + AC ++G + GR + + ++
Sbjct: 634 FSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRA-LHGQGVKACFSREVMFN 692
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ S+ G L +A + M K V W +L+
Sbjct: 693 NTLLDMYSKCGNLNDAIQAFEKMGQKTV-VSWTSLIAA 729
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 3/140 (2%)
Query: 21 LIDMYVKCGCLEGARRVFIE-MEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP 79
L+ MYV CG L RR+F + + VF W+ M+ A G +E++ F KM ++GI
Sbjct: 492 LVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITG 551
Query: 80 NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEF 139
N TF +L +G V E +R + + G ++ ++G + A++
Sbjct: 552 NSYTFSCILKCFATLGRVGECKR-IHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKL 610
Query: 140 IRNMPIKPNGVVWGALLGGC 159
+ + + V W +++ GC
Sbjct: 611 FDELGDR-DVVSWNSMISGC 629
>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
Length = 440
Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 235/352 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH +SG ++ V N+L+ MY KCGC+E A +VF ME + V TW+A+I G A +G
Sbjct: 89 QVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNG 148
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +E+L +N MI G+KP+ +TFIGLL AC H G V+ GR +F SM YGI P EHY
Sbjct: 149 RGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSMEEVYGIKPGPEHY 208
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DLL R+G L EA E + M ++P+ VW ALL CRVH N++L E A+ L +L+P
Sbjct: 209 ACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAANNLFELEP 268
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N +V+LSN+Y+ A +WE+ A+ R+LM+ GV K PG S I + VH F++ D +HP
Sbjct: 269 KNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDRSHP 328
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ ++++ +K GY+P+ + L D++E+ KE L HSEKLA+ FGL+ PPG
Sbjct: 329 RTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEGKELGLAYHSEKLAVAFGLLTMPPG 388
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLR+C DCH A K +S + +R +++RD N FH F+ G+CSC DYW
Sbjct: 389 APIRIFKNLRICGDCHTAMKYVSGVFHRHVILRDSNCFHHFREGACSCSDYW 440
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 78/142 (54%), Gaps = 2/142 (1%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V N L+DMY K G + A VF +M ++ V +W++++ G +G +EAL F +M +G
Sbjct: 4 VNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMG 63
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
I P+ + +L AC + ++ G++ ++ + G+ + +V + ++ G +++A
Sbjct: 64 IHPDQIVIAAVLSACAELTVLEFGKQ-VHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDA 122
Query: 137 YEFIRNMPIKPNGVVWGALLGG 158
+ +M I+ + + W AL+ G
Sbjct: 123 NKVFDSMEIQ-DVITWTALIVG 143
>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 606
Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 163/339 (48%), Positives = 242/339 (71%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
NI V +L+DMYVKCGCL+ A +F +ME+R T+SAMI GLA+HG+ + AL F+KMI
Sbjct: 268 NIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMI 327
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
+ G++P+ V ++ +L+AC H G V EGRR F M E + P EHYGC+VDLL RAG L
Sbjct: 328 KEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLL 387
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIY 193
+EA E I+++PI+ N V+W L CRV +NI+L + A+++L +L N G ++++SN+Y
Sbjct: 388 EEALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLY 447
Query: 194 AEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLL 253
++ + W+DVAR R + G+K+TPG+S + + G H FV+ D +HP+ ++I++M ++
Sbjct: 448 SQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQME 507
Query: 254 DGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCE 313
+K +GY P+ + +LL+++E+EK++ L HS+K+A+ FGL+ TPPG+ I+I +NLR+C
Sbjct: 508 WQLKFEGYSPDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMCS 567
Query: 314 DCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
DCH K IS I REIVVRDRNRFH F+ G+CSC DYW
Sbjct: 568 DCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 9/166 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G ++ V N+LI+MY +CG +E + VF ++E +T +WS+M+ A G
Sbjct: 153 QIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMG 212
Query: 61 QAKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRR---FFYSMTTEYGIIPQ 116
E L F M E +K + L AC + G ++ G F +E II Q
Sbjct: 213 MWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQ 272
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ + G L +A + M K N + + A++ G +H
Sbjct: 273 TS----LVDMYVKCGCLDKALHIFQKME-KRNNLTYSAMISGLALH 313
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/125 (20%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH 93
A +F +++ F ++ MI+G +EAL +N+M++ G +P+ T+ LL AC
Sbjct: 85 AASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTR 144
Query: 94 MGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWG 153
+ + EG++ + + G+ + ++++ R G ++ + + K W
Sbjct: 145 LKSIREGKQ-IHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESK-TAASWS 202
Query: 154 ALLGG 158
+++
Sbjct: 203 SMVSA 207
>gi|414591914|tpg|DAA42485.1| TPA: pentatricopeptide repeat protein PPR986-12 [Zea mays]
Length = 548
Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 168/356 (47%), Positives = 248/356 (69%), Gaps = 6/356 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+ E S R++ + N+L+D+Y KCG +E AR+VF M ER + +W+AM+ LA HG+
Sbjct: 194 LRELGGASAVSRDVLINNSLVDLYGKCGAVELARQVFDRMSERDLASWNAMVLALANHGR 253
Query: 62 AKEALTSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+++L F++M + G+ PN +TF+ +L AC H G VDEGRR+F +M +E+GI P+IEHY
Sbjct: 254 VQDSLDLFDRMTRVEGLVPNAITFVAVLSACNHGGLVDEGRRYFAAMVSEHGIRPRIEHY 313
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC-RVHKNIDLAEEASR-QLDQL 178
GCMVD+L+RAGF++EA + + M +P+ ++W +LL C + + ++L+E ++ LD
Sbjct: 314 GCMVDILARAGFIEEALDVVAGMNCRPDSIIWRSLLDACCKRNAGLELSEAMAKLALDVP 373
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
D +G +V+LS +YA A+RW DV +R+LM G KK PG+SSI +DG VH+FVAGD +
Sbjct: 374 DDAVSGVYVLLSRVYASAQRWNDVGMIRQLMSQEGFKKEPGFSSIEMDGSVHQFVAGDTS 433
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTS--VVLLDIEEKEKEKFLYRHSEKLALTFGLMN 296
HPQ+E+I+ +++ + GY P+ S ++ DI+ + K L HSE+LA++FGL+N
Sbjct: 434 HPQSEEIYVKLDEIQQRLTSAGYKPDLSEAPMVADID-RTKGATLRLHSERLAISFGLLN 492
Query: 297 TPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PG PIRI+KNLRVC+DCH KLIS++ N EI+VRDR RFH F+ GSCSC DYW
Sbjct: 493 ATPGAPIRILKNLRVCKDCHTISKLISKLYNVEIIVRDRIRFHHFKDGSCSCKDYW 548
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 11/167 (6%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI--E 74
V N+L+ Y CG A VF + +R++ +W+ + LA +G AL F +M
Sbjct: 101 VANSLVHFYASCGRPGAALAVFRRVPDRSLVSWNTAVDALAGNGDHLAALDLFREMQRDR 160
Query: 75 IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH----YGCMVDLLSRA 130
+ P+ T +L AC G + G + E G + +VDL +
Sbjct: 161 PDLAPDAYTVQSVLGACAATGALSLGLYAHALLLRELGGASAVSRDVLINNSLVDLYGKC 220
Query: 131 GFLQEAYEFIRNMPIKP----NGVVWGALLGGCRVHKNIDLAEEASR 173
G ++ A + M + N +V AL RV ++DL + +R
Sbjct: 221 GAVELARQVFDRMSERDLASWNAMVL-ALANHGRVQDSLDLFDRMTR 266
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 166/352 (47%), Positives = 231/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH ++GF V N L+ MY KCG + A VF +EE+ V +W+ MI G A HG
Sbjct: 412 QVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHG 471
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++AL F M + G+KP+ +T +G+L AC H G +D G +FYSM +Y + P +HY
Sbjct: 472 FGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHY 531
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DLL RAG L+EA +RNMP P WGALLG R+H N +L E+A+ + +++P
Sbjct: 532 TCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKMEP 591
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G +V+LSN+YA + RW DV ++R MR GV+K G+S + V +H F GD HP
Sbjct: 592 QNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHTFSVGDCFHP 651
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ ++I+ E+L M+ +GY+ +T +VL D+EE+EKE L HSEKLA+ FG++ P G
Sbjct: 652 EKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAG 711
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+MKNLRVC+DCH A K IS+IV R I++RD +RFH F G CSCGDYW
Sbjct: 712 RPIRVMKNLRVCQDCHNAIKHISKIVGRLIILRDSHRFHHFSEGICSCGDYW 763
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 115/275 (41%), Gaps = 47/275 (17%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RNI NT+I Y + G + AR++F M +R +W+A+I G A +G +EAL F +M
Sbjct: 323 RNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEM 382
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRR-----------------------FFYSMTT 109
G N TF L C + ++ G++ +F +T
Sbjct: 383 KRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGST 442
Query: 110 EYG--IIPQIEH-----YGCMVDLLSRAGFLQEA---YEFIRNMPIKPNGVVWGALLGGC 159
+ + IE + M+ +R GF ++A +E ++ +KP+ + +L C
Sbjct: 443 DEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSAC 502
Query: 160 RVHKNIDLAEEASRQLDQ---LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKK 216
ID E +D+ + P + Y ++ ++ A R E+ LMRN+
Sbjct: 503 SHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMI-DLLGRAGRLEE---AENLMRNMPFD- 557
Query: 217 TPG---WSSITVDGVVHEFVAGDETHPQAEKIFQM 248
PG W ++ +H E AE +F+M
Sbjct: 558 -PGAASWGALLGASRIHGNTELGE--KAAEMVFKM 589
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 10/146 (6%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ N ++ YV+ L A ++F M ++ V +W+AM+ G A +G EA FNKM
Sbjct: 106 RDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKM 165
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
N +++ GLL A H G + E RR F S + ++ + C++ +
Sbjct: 166 PH----RNSISWNGLLAAYVHNGRLKEARRLFESQSNW-----ELISWNCLMGGYVKRNM 216
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGG 158
L +A + MP++ + + W ++ G
Sbjct: 217 LGDARQLFDRMPVR-DVISWNTMISG 241
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 10/146 (6%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ NT+I Y + G L A+R+F E R VFTW+AM+ G +G EA F+
Sbjct: 230 RDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFD-- 287
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E+ +K N +++ +L G+V + E I + M+ + G
Sbjct: 288 -EMPVK-NEISYNAML-----AGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGG 340
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGG 158
+ +A + MP + + V W A++ G
Sbjct: 341 IAQARKLFDMMPQR-DCVSWAAIISG 365
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 30/195 (15%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N L+ YVK L AR++F M R V +W+ MI G A G +A FN E I+
Sbjct: 205 NCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFN---ESPIR 261
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE--- 135
+ T+ ++ G VDE R++F M + I Y M+ AG++Q
Sbjct: 262 -DVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEI-----SYNAML-----AGYVQYKKM 310
Query: 136 --AYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN----------N 183
A E MP + N W ++ G + I A + + Q D ++ N
Sbjct: 311 VIAGELFEAMPCR-NISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQN 369
Query: 184 GYHVVLSNIYAEAER 198
G++ N++ E +R
Sbjct: 370 GHYEEALNMFVEMKR 384
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 80/186 (43%), Gaps = 33/186 (17%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEA------ 65
++++ N ++ Y + G ++ AR VF +M R +W+ ++ +G+ KEA
Sbjct: 136 KKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFES 195
Query: 66 -----LTSFNKMIEIGIKPNG----------------VTFIGLLHACGHMGWVDEGRRFF 104
L S+N ++ +K N +++ ++ +G + + +R F
Sbjct: 196 QSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLF 255
Query: 105 YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKN 164
I + + MV + G + EA ++ MP+K N + + A+L G +K
Sbjct: 256 -----NESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVK-NEISYNAMLAGYVQYKK 309
Query: 165 IDLAEE 170
+ +A E
Sbjct: 310 MVIAGE 315
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 10/145 (6%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
+I N I +++ G + A RVF M R+ +++AMI G + + A F+KM
Sbjct: 45 DIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMP 104
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
E + V G + + E + F M + + + M+ ++ GF+
Sbjct: 105 ERDLFSWNVMLTGYVRNRR----LGEAHKLFDLMPKK-----DVVSWNAMLSGYAQNGFV 155
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGG 158
EA E MP + N + W LL
Sbjct: 156 DEAREVFNKMPHR-NSISWNGLLAA 179
>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
Length = 665
Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 170/352 (48%), Positives = 224/352 (63%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+HE + N+ + N L+DMY CGCL+ AR +F M R V +W+++I HG
Sbjct: 314 RIHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVISWTSIISAYGKHG 373
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ F KM+ G++P+ + F+ +L AC H G + +G+ +F SMT+ Y IIP+ EHY
Sbjct: 374 HGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEHY 433
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG + EAY+FI M I+PN VWGALL CR+H N+D+ A+ L L P
Sbjct: 434 TCMVDLLGRAGCINEAYDFITTMLIEPNERVWGALLQACRIHSNMDIGLVAADNLFSLVP 493
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
GY+V+LSN+YA A RW DV VR +M N G+KK PG S + + VH F GD HP
Sbjct: 494 EQTGYYVLLSNMYARAGRWADVTSVRSVMVNKGIKKFPGTSIVELGDQVHTFHIGDRCHP 553
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q+E I+ ++LL ++ GY P L D+EE++KE L HSEKLA+ F L+NT PG
Sbjct: 554 QSEMIYHKLDELLGKIRGMGYNPEVEATLHDVEEEDKEDHLSVHSEKLAIAFLLLNTSPG 613
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IR+ NLR C DCH A KLIS I REIV++D NR H G CSCGDYW
Sbjct: 614 TIIRVTMNLRTCSDCHLAAKLISIITCREIVLKDTNRIHHIVQGVCSCGDYW 665
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 109/269 (40%), Gaps = 42/269 (15%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + RN+ V ++ I MY +CG E A RVF M R V +W+AMI G A G
Sbjct: 144 QIHSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVG 203
Query: 61 QAKEALTSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEG--RRFFYSMTTEYGIIPQI 117
A+ F + + + G P+ T G+L A G+ D RR F +M + ++
Sbjct: 204 LFDRAIEVFKQFVVLQGSMPDAGTMAGILPAMGNAKPDDIRFVRRVFDNMQFK-----EL 258
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNM---PIKPNGVVWGALLGGC----------RVHKN 164
+ M+ + + F +A E M ++P+ + +L C R+H+
Sbjct: 259 ISWNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEI 318
Query: 165 IDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSIT 224
I L L N L ++YA +D + LM + W+SI
Sbjct: 319 IKRKNMCPNLL-----LENA----LMDMYASCGCLKDAREIFDLM---SARDVISWTSI- 365
Query: 225 VDGVVHEFVAGDETHPQAEKIFQMWEKLL 253
++ H + ++EK+L
Sbjct: 366 --------ISAYGKHGHGREAVDLFEKML 386
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 76/160 (47%), Gaps = 8/160 (5%)
Query: 35 RRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM 94
RRVF M+ + + +W+AM+ A + +A+ F M + ++P+ +T +L CG +
Sbjct: 247 RRVFDNMQFKELISWNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGEL 306
Query: 95 GWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGA 154
G+R + + + P + ++D+ + G L++A E M + + + W +
Sbjct: 307 SAFSVGKR-IHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSAR-DVISWTS 364
Query: 155 LLGGCRVH----KNIDLAEEASRQLDQLDPLNNGYHVVLS 190
++ H + +DL E+ Q L+P + + VL+
Sbjct: 365 IISAYGKHGHGREAVDLFEKMLGQ--GLEPDSIAFVAVLA 402
>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 638
Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 173/352 (49%), Positives = 229/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H +N F + L+DMY KCGC++ +R +F M E+ ++W+ MI GLA HG
Sbjct: 287 RIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATHG 346
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F K + G P VTFIG+L AC G V EG+ FF MT YGI P++EHY
Sbjct: 347 LGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEHY 406
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLLSRAGF+ +A E I MP P+ V+W ++LG C+VH I+L EE +L Q+DP
Sbjct: 407 GCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKLIQMDP 466
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+NG++V L+ I+A +WEDV++VR+LM K GWS I +G VH FVAGD+ H
Sbjct: 467 THNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEAEGRVHRFVAGDKEHE 526
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I++M E + + GY N S VL DIEE+EKE + HSE+LA+ FGL+ T G
Sbjct: 527 RTTEIYKMLEIMGVRIAAAGYSANVSSVLHDIEEEEKENAIKEHSERLAIAFGLLVTKDG 586
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC DCH K+IS + REI+VRD +RFH F+ G CSC DYW
Sbjct: 587 DCIRIIKNLRVCGDCHEVSKIISLVFEREIIVRDGSRFHHFKKGICSCQDYW 638
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 88/183 (48%), Gaps = 21/183 (11%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ N++I +V+ G + A+++F+EM E+ V +W +I G +G+ ++AL F ++
Sbjct: 198 RDVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKEL 257
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-------YSMTTEYGIIPQIEHYGCMVD 125
E ++PN + LL A +G ++ G+R + MT G +VD
Sbjct: 258 GEQKLRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGT--------ALVD 309
Query: 126 LLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGY 185
+ ++ G + E+ MP K + W ++ G H L +EA ++ L G+
Sbjct: 310 MYAKCGCIDESRFLFDRMPEK-DKWSWNVMICGLATH---GLGQEALALFEKF--LTQGF 363
Query: 186 HVV 188
H V
Sbjct: 364 HPV 366
>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
Length = 648
Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 168/353 (47%), Positives = 242/353 (68%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V E + ++GF N+ V + L+DMY KCG ++ A +VF M+E+ V+T+S+MI GLA HG+
Sbjct: 296 VQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGR 355
Query: 62 AKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A EA+ F +M+ ++PN VTFIG+L AC H G V EGR +F M +YGI+P +HY
Sbjct: 356 ASEAIALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADHY 415
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG + EA + +R+M + P+G VWGALLG CR+H ++A+ + L +L+P
Sbjct: 416 ACMVDLLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLFKLEP 475
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSIT-VDGVVHEFVAGDETH 239
+ G +V+LSNI A A +WE+V++VR LMR +KK P S DG+VH+F AGD H
Sbjct: 476 ESIGNYVLLSNILASAGKWEEVSKVRILMRKQRLKKDPAVSLFEGRDGLVHQFFAGDNAH 535
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ +I + +L+ +KL+GY+P S ++ D+ ++EKE+ L HSEKLAL+FGL+
Sbjct: 536 PRTHEIKKALLELVAKLKLEGYVPILSSIVYDVNDEEKERLLMGHSEKLALSFGLLTLGS 595
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G IRI+KNLR+C+DCH +L+S + + EI+VRD RFH F+ G CSCG +W
Sbjct: 596 GCTIRIIKNLRICDDCHLFMQLVSRVESVEIIVRDNMRFHHFKNGECSCGGFW 648
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 45/190 (23%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWS------------------- 50
GF R+ V N+LI YV CG + AR+VF EM E+ V +W+
Sbjct: 172 GFDRHRFVENSLIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVF 231
Query: 51 ------------AMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMG--- 95
AM+ G A + +AL F++M E+G+ + V+ G + AC +G
Sbjct: 232 GRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALR 291
Query: 96 ---WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVW 152
WV E + G + +VD+ ++ G + EA + M K N +
Sbjct: 292 RAAWVQE-------IAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEK-NVYTY 343
Query: 153 GALLGGCRVH 162
+++ G H
Sbjct: 344 SSMIAGLASH 353
>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g01510, mitochondrial; Flags: Precursor
gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 584
Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 165/341 (48%), Positives = 237/341 (69%), Gaps = 2/341 (0%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
NI V N +DM++KCG E AR +F EM++R V +WS MI G A++G ++EALT F M
Sbjct: 244 NIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQ 303
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM--TTEYGIIPQIEHYGCMVDLLSRAG 131
G++PN VTF+G+L AC H G V+EG+R+F M + + + P+ EHY CMVDLL R+G
Sbjct: 304 NEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSG 363
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSN 191
L+EAYEFI+ MP++P+ +WGALLG C VH+++ L ++ + L + P YHV+LSN
Sbjct: 364 LLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSN 423
Query: 192 IYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEK 251
IYA A +W+ V +VR MR LG KK +SS+ +G +H F GD++HPQ++ I++ ++
Sbjct: 424 IYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDE 483
Query: 252 LLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRV 311
+L ++ GY+P+T V D+E +EKE L HSEKLA+ FGL+ PG PIR+MKNLR
Sbjct: 484 ILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRT 543
Query: 312 CEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
C+DCHA K +S + + EI++RD+NRFH F+ G CSC ++W
Sbjct: 544 CDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 16/177 (9%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++GF + L++ V G + AR+VF EM + +F W+ + +G +
Sbjct: 29 KIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQ 88
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
E+L + KM ++G++P+ T+ ++ A +G G ++ +YG +
Sbjct: 89 LPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFA-LHAHVVKYG-------F 140
Query: 121 GC-------MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
GC +V + + G L A +M +K + V W A L C N +A E
Sbjct: 141 GCLGIVATELVMMYMKFGELSSAEFLFESMQVK-DLVAWNAFLAVCVQTGNSAIALE 196
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + GF V L+ MY+K G L A +F M+ + + W+A + G
Sbjct: 131 LHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGN 190
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF 104
+ AL FNKM ++ + T + +L ACG +G ++ G +
Sbjct: 191 SAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIY 233
>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 176/346 (50%), Positives = 236/346 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + ++ + + N L DMY KCGC+ A+ VF EM ER V +WS +I GLA++G
Sbjct: 313 IHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGY 372
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A EA F +MIE G++PN ++F+GLL AC H G VD+G +F M YGI P+IEHYG
Sbjct: 373 ANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYG 432
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLLSRAG L +A I +MP++PN +VWGALLGGCR++K+ + E ++ +LD
Sbjct: 433 CVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSN 492
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G V L+N+YA R +D A R MR+ KTPG S I ++ V+EF GD +HPQ
Sbjct: 493 HSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQ 552
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ +I+ M +L MK+ GY P T +V+ +I+E+EKE L HSEKLAL FGL+NT GT
Sbjct: 553 SLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGT 612
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCS 347
IRI+KNLRVC DCH A K+IS+IV REIVVRDR+RFH F+ G CS
Sbjct: 613 TIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCS 658
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 13/173 (7%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + G N+ V N+L+D+Y K GC A+++F EM R V +W+ +I G G
Sbjct: 148 KVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSG 207
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A F+ M+E N V++ ++ +G ++E R+ F +M + + +
Sbjct: 208 MVDKARMVFDGMME----KNLVSWSTMISGYARVGNLEEARQLFENMP-----MRNVVSW 258
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMP----IKPNGVVWGALLGGCRVHKNIDLAE 169
M+ ++ +A E R M + PN V ++L C +DL +
Sbjct: 259 NAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGK 311
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 76/181 (41%), Gaps = 10/181 (5%)
Query: 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNG--VTFIGLLHACGHMGWVDEGRR 102
+F ++A+++ + H ++ FN + + PN TF +L AC + V EG++
Sbjct: 89 NIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQK 148
Query: 103 FFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ T+YG + +VDL + G A + M ++ + V W L+ G
Sbjct: 149 -VHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVR-DVVSWNTLISGYCFS 206
Query: 163 KNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSS 222
+D A D + V S + + R ++ R+L N+ ++ W++
Sbjct: 207 GMVDKARMV------FDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNA 260
Query: 223 I 223
+
Sbjct: 261 M 261
>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
Length = 787
Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 173/352 (49%), Positives = 230/352 (65%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + N+ V LIDMY KCG + ARR+F M+ + V +W+AMI G +HGQ
Sbjct: 436 LHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQ 495
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL + M++ + P TF+ +L+AC H G V+EG + F SMT +Y I P IEH
Sbjct: 496 GAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCT 555
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGV-VWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG L+EA+E I P G VWGALLG C VHK+ DLA+ AS++L +LDP
Sbjct: 556 CMVDLLGRAGQLKEAFELISEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQKLFELDP 615
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+GY+V+LSN++ +++ + A VR+ ++ + KTPG++ I + H F+AGD HP
Sbjct: 616 ENSGYYVLLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRAHP 675
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q+E I+ EKL M GY P T L D+EE+EKE + HSEKLA+ FGL++T PG
Sbjct: 676 QSEAIYSYLEKLTAKMIEAGYRPETEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPG 735
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IRI+KNLRVC DCH A K IS++ R IVVRD +RFH F+ G CSCGDYW
Sbjct: 736 TEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 86/161 (53%), Gaps = 2/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + +SGF N V + ++ + +E AR+ F M E+T+ +W+AMI G A +G
Sbjct: 335 LHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGL 394
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ A+ F +M+++ ++PN +T L AC +G + G ++ + + TE + P +
Sbjct: 395 TEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLG-KWLHRIITEEDLEPNVYVMT 453
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++ G + EA M K N V W A++ G +H
Sbjct: 454 ALIDMYAKCGSISEARRIFNTMDNK-NVVSWNAMIAGYGLH 493
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/288 (20%), Positives = 121/288 (42%), Gaps = 46/288 (15%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++ + G + V LI +Y KCG +E AR +F ME+ + ++A+I G +++G
Sbjct: 234 VHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGM 293
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIG-----------LLHACGHMGWVDEGRRFFYSMTT- 109
++ F +++ +G+ PN T + LL C H + G ++T
Sbjct: 294 VGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTA 353
Query: 110 ----------------EYGIIPQ--IEHYGCMVDLLSRAGFLQEA---YEFIRNMPIKPN 148
+ +P+ +E + M+ ++ G + A +E + + ++PN
Sbjct: 354 ITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPN 413
Query: 149 GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGY-HVVLSNIYAEAERWEDVARVRK 207
+ + L C + L + R + + D N Y L ++YA+ + R+
Sbjct: 414 PITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFN 473
Query: 208 LMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDG 255
M N K W+++ +AG H Q + ++++ +LD
Sbjct: 474 TMDN---KNVVSWNAM---------IAGYGLHGQGAEALKLYKDMLDA 509
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 7/147 (4%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V + L +Y ++ AR+VF + W+ ++ GL+ EA+ SF +M+ G
Sbjct: 151 VASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLS----GSEAVESFARMVCDG 206
Query: 77 -IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE 135
++P+ T +L A + V G R +S + G+ ++ L S+ G ++
Sbjct: 207 SVRPDATTLASVLPAAAEVADVTMG-RCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVES 265
Query: 136 AYEFIRNMPIKPNGVVWGALLGGCRVH 162
A + +M KP+ V + AL+ G V+
Sbjct: 266 A-RCLFDMMEKPDLVAYNALISGYSVN 291
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 170/351 (48%), Positives = 225/351 (64%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + G + V +LI MY KCG + AR VF +M R W+AM+ G HG
Sbjct: 518 VHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGD 577
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ F +M++ + PN +T ++ AC G V EGR F M ++ + P+ +HYG
Sbjct: 578 GLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYG 637
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG LQEA EFI++MP +P+ VW ALLG C+ H N+ LAE A+ + +L+P
Sbjct: 638 CMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELEPS 697
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++ LSNIYA+A RW+D +VR++M + G+KK G SSI +DG +H FVA D HP+
Sbjct: 698 YASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFVAEDCAHPE 757
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ I E L MK GY P+ VL D+++ +KEK L HSEKLA+ +GL+ TP GT
Sbjct: 758 IDAIHAELETLTKEMKEAGYTPDMRFVLHDVDDVQKEKALCHHSEKLAIAYGLLKTPSGT 817
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRIMKNLRVC DCH A K IS+I REIV RD NRFH F G+CSCGD+W
Sbjct: 818 PIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFNNGTCSCGDFW 868
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 85/357 (23%), Positives = 145/357 (40%), Gaps = 74/357 (20%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H G ++ V LI MY KCG + A VF +M ER V +W+A+IQ A H
Sbjct: 178 KIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHR 237
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFY--------------- 105
+ EA + +M++ GI PN VTF+ LL++C ++ GRR
Sbjct: 238 KLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVAN 297
Query: 106 SMTTEYGIIPQIEHYGCMVDLLSR----------AGFLQEAY-------------EFIRN 142
++ T Y ++ + D +S+ AG+ Q Y E +R
Sbjct: 298 ALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRR 357
Query: 143 MPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD-PLNNGYHVVLSNIYAEAERWED 201
+ PN V + ++L C H ++ + +L ++ L+ + N+YA+ +
Sbjct: 358 EGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYE 417
Query: 202 VARVRKLMRNLGVKKTPGWSSI-----------TVDGVVHE-----------FVAGDETH 239
+V M N K W+S + + V E +AG +
Sbjct: 418 AEQVFSKMAN---KNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQN 474
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEE------KEKEKFLYRHSEKLAL 290
K+F+ LL MK +G+ P+ V+ +E E+ K ++ + KL L
Sbjct: 475 GDIVKVFE----LLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGL 527
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 90/176 (51%), Gaps = 2/176 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+ ++ G +I + N+LI+ Y K + A +VF M R V TWS+MI A +
Sbjct: 78 VHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNH 137
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+A +F +M + I+PN +TF+ +L AC + +++GR+ +++ G+ +
Sbjct: 138 PAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRK-IHTIVKAMGMETDVAVAT 196
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
++ + S+ G + A E M + N V W A++ H+ ++ A E Q+ Q
Sbjct: 197 ALITMYSKCGEISVACEVFHKMT-ERNVVSWTAIIQANAQHRKLNEAFELYEQMLQ 251
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+N+ + + MY+KCG L A +VF EM R V +W+ MI G A +G + + M
Sbjct: 428 KNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSM 487
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
G +P+ VT I +L ACG + ++ G + ++ + G+ ++ + S+ G
Sbjct: 488 KAEGFQPDRVTVITILEACGALAGLERG-KLVHAEAVKLGLESDTVVATSLIGMYSKCGQ 546
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ EA M + + V W A+L G H
Sbjct: 547 VAEARTVFDKMSNR-DTVAWNAMLAGYGQH 575
>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 679
Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 238/352 (67%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y + GF RNI + + L+DMY KCG ++ AR++F M +W+A+I G A+HG
Sbjct: 328 QLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHG 387
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA++ F +M G+KPN V F+ +L AC H+G VDE +F SMT YG+ ++EHY
Sbjct: 388 HGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHY 447
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+ DLL RAG L+EAY+FI M ++P G VW LL C VHKN++LAE+ + ++ +D
Sbjct: 448 AAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDS 507
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +V++ N+YA RW+++A++R +R G++K P S I + H FV+GD +HP
Sbjct: 508 ENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDRSHP 567
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++I + + +++ M+ +GY+ +TS VL D++E+ K + L+ HSE+LA+ FG++NT PG
Sbjct: 568 SMDRINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPG 627
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IR+ KN+R+C DCH A K IS+I REI+VRD +RFH F GSCSCGDYW
Sbjct: 628 TTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGSCSCGDYW 679
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 88/177 (49%), Gaps = 6/177 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + G ++ + ++L+DMY K +E + RVF + R +W++++ G +G+
Sbjct: 228 IHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGR 287
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL F +M+ ++P V F ++ AC H+ + G++ + G I
Sbjct: 288 YNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQ-LHGYVLRGGFGRNIFIAS 346
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRV----HKNIDLAEEASRQ 174
+VD+ S+ G +Q A + M + + V W A++ G + H+ + L EE RQ
Sbjct: 347 ALVDMYSKCGNIQAARKIFDRMNLH-DEVSWTAIIMGHALHGHGHEAVSLFEEMKRQ 402
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 74/157 (47%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + G ++ N L++MY K ++ R+VF M + V +++ +I G A G
Sbjct: 127 VHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGM 186
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL +M +KP+ T +L V +G+ + GI +
Sbjct: 187 YEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKE-IHGYVIRKGIDSDVYIGS 245
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ +++ ++++ E + + + + + W +L+ G
Sbjct: 246 SLVDMYAKSARIEDS-ERVFSHLYRRDSISWNSLVAG 281
>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
Length = 552
Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 163/345 (47%), Positives = 233/345 (67%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
++G++ V N L+ MY KCG ++ AR F E+ E+ V +W+ MI G A HG +EALT
Sbjct: 208 KAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALT 267
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F M GI+P+ T + +L AC H G VD+G +FYSM +YGI ++ HY CMVDLL
Sbjct: 268 VFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLL 327
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV 187
RAG L+EA ++NMP +P+ WGALLG R+H N +L E+A++ + +++P N+G ++
Sbjct: 328 GRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIFEMEPHNSGMYI 387
Query: 188 VLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQ 247
+LS +YA + RW D ++R MRN GVKK PG+S + V +H F GD +HP +KI+
Sbjct: 388 LLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQNKIHTFKVGDTSHPHTDKIYT 447
Query: 248 MWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMK 307
E++ +K +GYI +T++V D+EE+EK L HSEKLA+ +G++ P G PIR++K
Sbjct: 448 FLEEMDLKLKQEGYISSTNLVFHDVEEEEKVHMLKYHSEKLAVAYGILYIPAGRPIRVIK 507
Query: 308 NLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
NLRVCEDCH A K IS+IV R I++RD +RFH F+ GSCSC D+W
Sbjct: 508 NLRVCEDCHNAIKYISKIVGRLIILRDNHRFHYFEGGSCSCRDFW 552
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ N ++ YV+ L+ AR +F M ER + +W+AM+ G A +G EA F KM
Sbjct: 24 RDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYKM 83
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
NG+++ GLL A G +++ +R F S ++ ++ + C++ GF
Sbjct: 84 ----PLKNGISWNGLLAAYVQNGRIEDAKRLFES-KMDWTLVS----WNCLM-----GGF 129
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGG 158
+++ NMP + + + W A++ G
Sbjct: 130 VRKRRNLFDNMP-QRDSISWSAMIAG 154
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 73/183 (39%), Gaps = 38/183 (20%)
Query: 26 VKCGCLEGA-----RRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
V CL G R +F M +R +WSAMI G + +G ++EAL F +M + N
Sbjct: 120 VSWNCLMGGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLN 179
Query: 81 GVTFIGLLHACGHMGWVDEGRRF------------------FYSMTTEYGIIPQ------ 116
+F L C ++ ++ GR+ +M + G I +
Sbjct: 180 RSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQ 239
Query: 117 ------IEHYGCMVDLLSRAGFLQEA---YEFIRNMPIKPNGVVWGALLGGCRVHKNIDL 167
+ + M+ +R GF +EA +E ++ I+P+ ++L C +D
Sbjct: 240 EILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQ 299
Query: 168 AEE 170
E
Sbjct: 300 GSE 302
>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
Length = 803
Score = 357 bits (915), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 165/353 (46%), Positives = 242/353 (68%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERT-VFTWSAMIQGLAIH 59
++H + +S +++ V N +I +Y + G + ARRVF ++ R TW++MI LA H
Sbjct: 451 QIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQH 510
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G ++A+ F +M+ +G+KP+ VT+IG+ AC H G++D+G+R++ M E+GI+P++ H
Sbjct: 511 GLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSH 570
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CMVDLL+RAG L EA+EFI+ MP+ P+ VVWG+LL CRV KN DLAE A+ +L +D
Sbjct: 571 YACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSID 630
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N+G + L+N+Y+ RW D AR+ KL ++ VKK G+S V VH F A D H
Sbjct: 631 PDNSGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLH 690
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
PQ + I + ++ + +K G++P+ + VL D++++ KE+ L RHSEKLA+ FGL++TP
Sbjct: 691 PQRDAICKKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPE 750
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T +RIMKNLRVC DCH A K IS++V+REI+VRD RFH F+ G CSC DYW
Sbjct: 751 KTTLRIMKNLRVCNDCHTAIKFISKVVDREIIVRDATRFHHFRDGYCSCKDYW 803
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N+ L++ YVK G + AR VF M R V W+AMI G +GQ EA+ F MI
Sbjct: 363 NVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMI 422
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRF 103
G +PN T +L AC + ++ G++
Sbjct: 423 RSGPEPNSHTLAAVLSACASLAYLGYGKQI 452
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 2/157 (1%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
RRN N+L+ MY K G L AR VF +M ER +W+ M+ GL G+ +A+ +F
Sbjct: 94 RRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLD 153
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M+ G+ P+ +L +C GR+ +S + G+ + ++ + + G
Sbjct: 154 MVGEGLAPSQFMLTNVLSSCAATEARGIGRK-VHSFVIKLGLSSCVPVANSVLYMYGKCG 212
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
+ A M ++ W A++ +DLA
Sbjct: 213 DAETARAVFERMKVRSES-SWNAMVSLYTHQGRMDLA 248
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + G + V N+++ MY KCG E AR VF M+ R+ +W+AM+ G
Sbjct: 184 KVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQG 243
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP 115
+ AL+ F M E I V++ ++ G D +FF M T + P
Sbjct: 244 RMDLALSMFENMEERSI----VSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEP 294
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCG----CLEGARRVF--IEMEERTVFTWSAMIQG 55
+H ++ ++G + +CN L+ Y + G C ARR+F I R FTW++++
Sbjct: 47 IHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWNSLLSM 106
Query: 56 LAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90
A G+ +A F +M E V +GL A
Sbjct: 107 YAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRA 141
>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 357 bits (915), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 237/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+HE+ + R N+ V LIDMY KCG + +VF E+ E+ V+TW+ +I G A++GQ
Sbjct: 212 IHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQ 271
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AL +F++M+ KP+ VTF+G+L AC H G V EGR F SM ++G+ P+IEHYG
Sbjct: 272 GDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYG 331
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L+EA E I++M I+P+ ++W ALL CRVH N L E ++L +L+P
Sbjct: 332 CMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPN 391
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N +V+LSNIY+ RW +V ++R +M G++K PG SSI ++ VV+EFVA ++ P+
Sbjct: 392 NGENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRKVPGCSSIEINNVVYEFVASNDRKPE 451
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E I++ + L+ +K GY+ T + L DIE++EKE + HSEKLAL FGL+N+P
Sbjct: 452 FEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKLALAFGLLNSPLDC 511
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+RI+KNLR+C DCH FK++S + R IVVRDRNRFH F G CSC DYW
Sbjct: 512 TLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSCRDYW 562
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 15/181 (8%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Q GF ++ L+ +Y C + A ++F EM ER TW+A+I G + +
Sbjct: 111 IHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRK 170
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR---RFFYSMTTEYGIIPQIE 118
+A+ +F M+ G +P+ T + +L AC H+G ++G+ F Y +
Sbjct: 171 FVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGT- 229
Query: 119 HYGCMVDLLSRAGFLQE---AYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA-SRQ 174
++D+ ++ G + E +E IR + N W L+ G ++ D A +A SR
Sbjct: 230 ---ALIDMYAKCGAVYEVEKVFEEIR----EKNVYTWNVLISGYAMNGQGDAALQAFSRM 282
Query: 175 L 175
L
Sbjct: 283 L 283
>gi|356570245|ref|XP_003553300.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g26782, mitochondrial-like [Glycine max]
Length = 555
Score = 357 bits (915), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 244/351 (69%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + ++ V +++D+Y KC +E AR+ F M+ + V +W+AM+ G +HG+
Sbjct: 206 IHHQVIKMDLEDSVFVGTSIVDIYCKCERVEMARKAFDCMKVKNVKSWTAMVAGYGMHGR 265
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AKEA+ F KMI G+KPN +TF+ +L AC H G + EG +F M E+ + P IEHY
Sbjct: 266 AKEAMEIFYKMIRSGVKPNYITFVSVLAACSHAGMLKEGXHWFNRMKCEFIVEPGIEHYL 325
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG+L Y I+ M KP+ ++WG+LLG CR+HKN++L E ++R+L +LD
Sbjct: 326 CMVDLLGRAGYLX-CYGLIKEMNAKPDFIIWGSLLGACRIHKNVELGEISARKLFELDXS 384
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+V+LSNIYA+A RW++V R+R LM++ G+ K PG+S + + G +H + GD+ HPQ
Sbjct: 385 NCGYYVLLSNIYADAGRWDEVERMRILMKSRGLLKAPGFSIVELKGRIHVLLVGDKEHPQ 444
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
EKI++ +K ++ GY+PN ++VL D++E+EK L HSEKLA+ FG+MN+ PG+
Sbjct: 445 HEKIYEYLDKXNVKLQELGYMPNXNMVLHDVDEEEKGMVLRVHSEKLAVAFGIMNSVPGS 504
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I I+KNLR+C DC+ KLI ++VNREIVVRD RFH F+ GSCSCGDYW
Sbjct: 505 IIHIIKNLRICGDCNVVIKLIFKVVNREIVVRDSKRFHHFKEGSCSCGDYW 555
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + GF R + V NTL+D Y K G + G +VF M E + W+++I A +G
Sbjct: 110 VHGLVIKRGFERCVGVGNTLMDAYAKFGEM-GVAKVFDGMNESDHYFWNSVIAEYAQNGL 168
Query: 62 AKEALTSFNKMIEIG 76
+ EA + F M++ G
Sbjct: 169 SAEAFSVFGDMVKSG 183
>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
Length = 805
Score = 357 bits (915), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 164/352 (46%), Positives = 242/352 (68%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y ++G+ + V N L+D+YVKCG L AR +F + + + +W+ MI G +HG
Sbjct: 454 IHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGY 513
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ +FN+M + GI+P+ V+FI +L+AC H G +++G RFFY M ++ I P++EHY
Sbjct: 514 GNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYA 573
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLLSR G L +AYEFI +PI P+ +WGALL GCR++ +I+LAE+ + ++ +L+P
Sbjct: 574 CMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPE 633
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAG-DETHP 240
N GY+V+L+NIYAEAE+WE+V R+R+ + G++K PG S I + G V+ FV+G + +HP
Sbjct: 634 NTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGKVNLFVSGNNSSHP 693
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++KI + +K+ MK +GY P T L++ +E +KE L HSEKLA+ FGL+ PP
Sbjct: 694 HSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLALPPR 753
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+R+ KNLRVC DCH K +S+ REIV+RD NRFH F+ G CSC +W
Sbjct: 754 KTVRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKNGYCSCRGFW 805
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + +S F R I NTL+DMY KCG L+GA RVF +M ER V +W++MI G G+
Sbjct: 273 VHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGR 332
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ A+ +M + G+K + V +LHAC G +D G+ + + +
Sbjct: 333 SDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKD-VHDYIKANNMESNLFVCN 391
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
++D+ ++ G + A M +K + + W ++G
Sbjct: 392 ALMDMYTKCGSMDGANSVFSTMVVK-DIISWNTMIG 426
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 76/157 (48%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V EY+ F+ +I + +++ ++ E A +F ++ +R V +W++MI G +G
Sbjct: 172 VSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGL 231
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ L + +M+ +GI + T I +L C + G + G+ +S+ + +I
Sbjct: 232 TERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKA-VHSLAIKSTFERRINFSN 290
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ S+ G L A M + N V W +++ G
Sbjct: 291 TLLDMYSKCGDLDGALRVFEKMG-ERNVVSWTSMIAG 326
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
L+ +Y CG L+ RRVF ME++ V+ W+ M+ A G KE++ F M+E GI+
Sbjct: 140 LVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIE 197
>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g24000, mitochondrial-like [Cucumis sativus]
Length = 677
Score = 357 bits (915), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 240/351 (68%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + +SG + + NTLIDMY K G ++ A++VF + ++ + +W+++I G A HG
Sbjct: 328 VHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGL 387
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL F +M++ ++PN +TF+ +L AC H G +DEG+ +++ + ++ I Q+ H+
Sbjct: 388 GAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQ-YYFELMKKHKIEAQVAHHV 446
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+VDLL RAG L EA +FI MPIKP VWGALLG CR+HKN+DL A+ Q+ +LDP
Sbjct: 447 TVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPH 506
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G HV+LSNIYA A R D A+VRK+M+ GVKK P S + ++ VH FVA D++HP
Sbjct: 507 DSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPM 566
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E+I +MWEK+ +K GY+P+TS VL + ++++E L HSEKLAL F ++ TPPG
Sbjct: 567 REEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGL 626
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI KN+R+C DCH+AFK S ++ REI+VRD NRFH F G CSC DYW
Sbjct: 627 TIRIKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 677
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 96/194 (49%), Gaps = 10/194 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + S F ++ + N +++MY KCG LE A+ +F +M + + +W+ +I G + GQ
Sbjct: 127 IHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQ 186
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A EAL F KM+ +G +PN T LL A G G D R ++ + +YG +
Sbjct: 187 ASEALALFPKMLHLGFQPNEFTLSSLLKASG-TGPSDHHGRQLHAFSLKYGYDMNVHVGS 245
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL--- 178
++D+ +R ++EA ++ K N V W AL+ G H E R Q+
Sbjct: 246 SLLDMYARWAHMREAKVIFNSLAAK-NVVSWNALIAG---HARKGEGEHVMRLFXQMLRQ 301
Query: 179 --DPLNNGYHVVLS 190
+P + Y VL+
Sbjct: 302 GFEPTHFTYSSVLA 315
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 96/178 (53%), Gaps = 6/178 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +S + G+ N+ V ++L+DMY + + A+ +F + + V +W+A+I G A G
Sbjct: 227 QLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKG 286
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ + + F +M+ G +P T+ +L AC G +++G ++ ++ + G P
Sbjct: 287 EGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQG-KWVHAHVIKSGGQPIAYIG 344
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++D+ +++G +++A + R + +K + V W +++ G H L EA + +Q+
Sbjct: 345 NTLIDMYAKSGSIKDAKKVFRRL-VKQDIVSWNSIISGYAQH---GLGAEALQLFEQM 398
>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
Length = 1286
Score = 357 bits (915), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 169/344 (49%), Positives = 237/344 (68%), Gaps = 1/344 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + +SG + + NTL+DMY K G ++ A+RVF + + V +W+ M+ G A HG
Sbjct: 312 VHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGL 371
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KE L F +M+ IGI+PN ++F+ +L AC H G +DEG +++ + +Y + P + HY
Sbjct: 372 GKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGL-YYFELMKKYKVEPDVPHYV 430
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
VDLL R G L A FIR MPI+P VWGALLG CR+HKN++L A+ + +LDP
Sbjct: 431 TFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPH 490
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G ++LSNIYA A RW DVA+VRK+M+ GVKK P S + ++ VH FVA DETHP+
Sbjct: 491 DSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPR 550
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I WE++ +K GY+P+TS VLL ++++E+E+ L HSEKLAL F L+NTP G+
Sbjct: 551 IKEIRGKWEEISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGS 610
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGS 345
PIRI KN+RVC DCHAA K +S++V+REI+VRD NRFH F+ GS
Sbjct: 611 PIRIKKNIRVCGDCHAAIKFVSKVVDREIIVRDTNRFHRFRDGS 654
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 2 VHEYSNQSGFRRNIRVC-NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
VH + S F N V N +++MY KCGCL+ ARR+F EM + + TW+A+I G + +
Sbjct: 109 VHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNN 168
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ ++AL F +M+ +G +PN T LL A G +D G + ++ +YG +
Sbjct: 169 RPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQ-LHAFCLKYGYQSSVYVG 227
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ +R G + A MP K + V W AL+ G
Sbjct: 228 SALVDMYARCGHMDAAQLAFDGMPTK-SEVSWNALISG 264
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 87/162 (53%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G++ ++ V + L+DMY +CG ++ A+ F M ++ +W+A+I G A G
Sbjct: 210 QLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKG 269
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ + AL KM +P T+ +L AC +G +++G ++ ++ + G+
Sbjct: 270 EGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQG-KWVHAHMIKSGLKLIAFIG 328
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++AG + +A + +KP+ V W +L GC H
Sbjct: 329 NTLLDMYAKAGSIDDAKRVFDRL-VKPDVVSWNTMLTGCAQH 369
>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Cucumis sativus]
Length = 678
Score = 357 bits (915), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 240/351 (68%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + +SG + + NTLIDMY K G ++ A++VF + ++ + +W+++I G A HG
Sbjct: 329 VHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGL 388
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL F +M++ ++PN +TF+ +L AC H G +DEG+ +++ + ++ I Q+ H+
Sbjct: 389 GAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQ-YYFELMKKHKIEAQVAHHV 447
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+VDLL RAG L EA +FI MPIKP VWGALLG CR+HKN+DL A+ Q+ +LDP
Sbjct: 448 TVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPH 507
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G HV+LSNIYA A R D A+VRK+M+ GVKK P S + ++ VH FVA D++HP
Sbjct: 508 DSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPM 567
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E+I +MWEK+ +K GY+P+TS VL + ++++E L HSEKLAL F ++ TPPG
Sbjct: 568 REEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGL 627
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI KN+R+C DCH+AFK S ++ REI+VRD NRFH F G CSC DYW
Sbjct: 628 TIRIKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 678
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + S F ++ + N +++MY KCG LE A+ +F +M + + +W+ +I G + GQ
Sbjct: 127 IHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQ 186
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A EAL F KM+ +G +PN T LL A G G D R ++ + +YG +
Sbjct: 187 ASEALALFPKMLHLGFQPNEFTLSSLLKASG-TGPSDHHGRQLHAFSLKYGYDMNVHVGS 245
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ +R ++EA ++ K N V W AL+ G
Sbjct: 246 SLLDMYARWAHMREAKVIFNSLAAK-NVVSWNALIAG 281
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 95/178 (53%), Gaps = 5/178 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +S + G+ N+ V ++L+DMY + + A+ +F + + V +W+A+I G A G
Sbjct: 227 QLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKG 286
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ + + F +M+ G +P T+ + AC G +++G ++ ++ + G P
Sbjct: 287 EGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQG-KWVHAHVIKSGGQPIAYIG 345
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++D+ +++G +++A + R + +K + V W +++ G H L EA + +Q+
Sbjct: 346 NTLIDMYAKSGSIKDAKKVFRRL-VKQDIVSWNSIISGYAQH---GLGAEALQLFEQM 399
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 357 bits (915), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 170/352 (48%), Positives = 244/352 (69%), Gaps = 6/352 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+ +N S R +LIDMY KCG +E A++VF + R++ +W+AMI G A+HG
Sbjct: 350 RLKGVANASSHR------TSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHG 403
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A A F++M + I+P+ +TF+GLL AC H G +D GR F SM +Y I P++EHY
Sbjct: 404 RANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHY 463
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCM+DLL +G +EA E I M ++P+GV+W +LL C++H N++L E ++ L +++P
Sbjct: 464 GCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEP 523
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +V+LSNIYA A RW +VA++R L+ + G+KK PG SSI +D VVHEF+ GD+ HP
Sbjct: 524 KNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHP 583
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ M E++ ++ G++P+TS VL ++EE+ KE L HSEKLA+ FGL++T PG
Sbjct: 584 RNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPG 643
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T + I+KNLRVC +CH A KLIS+I REI+ RDR RFH F+ G CSC DYW
Sbjct: 644 TKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 695
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 8/172 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + GF N+++ N LID+Y+KCG +E A +F + + V +W+ +I G
Sbjct: 241 QVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMN 300
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY-GIIPQIEH 119
KEAL F +M+ G PN VT + +L AC H+G ++ GR + G+ H
Sbjct: 301 LYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSH 360
Query: 120 YGCMVDLLSRAGFL---QEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++D+ ++ G + Q+ ++ I N + W A++ G +H + A
Sbjct: 361 RTSLIDMYAKCGDIEAAQQVFDSILNRSLSS----WNAMIFGFAMHGRANAA 408
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 83/159 (52%), Gaps = 5/159 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ LI Y G + A+++F E+ + V +W+AMI G A G KEAL F +M
Sbjct: 152 RDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEM 211
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
++ ++P+ T + ++ AC ++ GR+ +S ++G ++ ++DL + G
Sbjct: 212 MKTNVRPDESTMVSVVSACAQSASIELGRQ-VHSWIDDHGFGSNLKIVNALIDLYIKCGE 270
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
++ A + K + + W L+GG + +++L +EA
Sbjct: 271 VETACGLFEGLSYK-DVISWNTLIGG---YTHMNLYKEA 305
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 34/190 (17%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEG---ARRVFIEMEERTVFTWSAMIQGLAI 58
+H ++G + LI+ V +G A VF ++E + W+ M +G A+
Sbjct: 6 IHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 65
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF--------------- 103
AL + MI +G+ PN TF LL +C EG++
Sbjct: 66 SSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYV 125
Query: 104 ---FYSMTTEYG-------IIPQIEH-----YGCMVDLLSRAGFLQEAYEFIRNMPIKPN 148
SM + G + Q H Y ++ + G++ A + +PIK +
Sbjct: 126 HTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIK-D 184
Query: 149 GVVWGALLGG 158
V W A++ G
Sbjct: 185 VVSWNAMISG 194
>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 607
Score = 357 bits (915), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 244/352 (69%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+Y ++G + ++ T+IDMY KCGCL+ A VF ++ + V +W+ MI G A+HG+
Sbjct: 256 IHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGK 315
Query: 62 AKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++A+ F +M E + P+ +TF+ +L AC H G V+EG +F M +GI P EHY
Sbjct: 316 GEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKEHY 375
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLL+RAG L+EA + I MP+ P+ V GALLG CR+H N++L EE ++ +LDP
Sbjct: 376 GCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGALLGACRIHGNLELGEEVGNRVIELDP 435
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G +V+L N+YA +WE VA VRKLM + GVKK PG+S I ++GVV+EFVAG HP
Sbjct: 436 ENSGRYVILGNMYASCGKWEQVAGVRKLMDDRGVKKEPGFSMIEMEGVVNEFVAGGRDHP 495
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
AE I+ ++L+ +++ G++P+T VL D+ E+E+E L+ HSEKLA+ +GL+ T G
Sbjct: 496 LAEAIYAKIYEMLESIRVVGFVPDTDGVLHDLVEEERENPLFYHSEKLAIAYGLLKTKRG 555
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+R+ KNLRVC+DCH A K+IS++ + +I++RDR+RFH F G CSC DYW
Sbjct: 556 ETLRVTKNLRVCKDCHQASKMISKVYDCDIIIRDRSRFHHFSNGECSCKDYW 607
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 89/212 (41%), Gaps = 38/212 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + GF + N LI +Y G L+ ARRVF M + V +W++++ G + G
Sbjct: 121 QLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWG 180
Query: 61 QAKEAL------------TSFNKMIEIGIKPNGV-------------------TFIG--L 87
EA S+N MI +K N F+ +
Sbjct: 181 LVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATM 240
Query: 88 LHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKP 147
L AC +G +++G + + + GI+ + ++D+ + G L +A+ + +K
Sbjct: 241 LSACTGVGALEQG-MWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKR 299
Query: 148 NGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
W ++GG +H E+A R +++
Sbjct: 300 VS-SWNCMIGGFAMHGK---GEDAIRLFKEME 327
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 46 VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFY 105
FT+ ++I+ + +AK+ +++ G + L+H G +D+ RR F
Sbjct: 103 AFTFPSLIRACKLEEEAKQL---HAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFC 159
Query: 106 SMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKN 164
+M+ P + + +V S+ G + EA+ MP K N V W A++ C V N
Sbjct: 160 TMSD-----PNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMI-ACFVKGN 212
>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 356 bits (914), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 237/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+HE+ + R N+ V LIDMY KCG + +VF E+ E+ V+TW+ +I G A++GQ
Sbjct: 212 IHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQ 271
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AL +F++M+ KP+ VTF+G+L AC H G V EGR F SM ++G+ P+IEHYG
Sbjct: 272 GDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYG 331
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L+EA E I++M I+P+ ++W ALL CRVH N L E ++L +L+P
Sbjct: 332 CMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPN 391
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N +V+LSNIY+ RW +V ++R +M G++K PG SSI ++ VV+EFVA ++ P+
Sbjct: 392 NGENYVLLSNIYSRERRWAEVGKLRGMMSLRGIRKVPGCSSIEINNVVYEFVASNDRKPE 451
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E I++ + L+ +K GY+ T + L DIE++EKE + HSEKLAL FGL+N+P
Sbjct: 452 FEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKLALAFGLLNSPLDC 511
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+RI+KNLR+C DCH FK++S + R IVVRDRNRFH F G CSC DYW
Sbjct: 512 TLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSCRDYW 562
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 15/181 (8%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Q GF ++ L+ +Y C + A ++F EM ER TW+A+I G + +
Sbjct: 111 IHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRK 170
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR---RFFYSMTTEYGIIPQIE 118
+A+ +F M+ G +P+ T + +L AC H+G ++G+ F Y +
Sbjct: 171 FVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGT- 229
Query: 119 HYGCMVDLLSRAGFLQE---AYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA-SRQ 174
++D+ ++ G + E +E IR + N W L+ G ++ D A +A SR
Sbjct: 230 ---ALIDMYAKCGAVYEVEKVFEEIR----EKNVYTWNVLISGYAMNGQGDAALQAFSRM 282
Query: 175 L 175
L
Sbjct: 283 L 283
>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 745
Score = 356 bits (914), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 170/351 (48%), Positives = 230/351 (65%), Gaps = 20/351 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H Y N+ G ++ + LI+MY KCG + AR +F E +R + W+ M+ G ++HG
Sbjct: 415 THAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMWNTMMAGFSMHGC 474
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEAL F++M G++PN +TF+ + HAC H G +EHYG
Sbjct: 475 GKEALELFSEMESHGVEPNDITFVSIFHACSHSGL--------------------MEHYG 514
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL RAG L EA+ I NMP++PN ++WGALL C++HKN+ L E A+R++ +LDP
Sbjct: 515 CLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLAACKLHKNLALGEVAARKILELDPQ 574
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY V+ SNIYA A+RW DV VR+ M + G+KK PG S I V G VH F +GD+ Q
Sbjct: 575 NCGYSVLKSNIYASAKRWNDVTSVREAMSHSGMKKEPGLSWIEVSGSVHHFKSGDKACTQ 634
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
K+++M ++ ++ GY PNT+ VLL+I+E+EKE L HSEKLA FGL++T PGT
Sbjct: 635 TTKVYEMVTEMCIKLRESGYTPNTAAVLLNIDEEEKESALSYHSEKLATAFGLISTAPGT 694
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLR+C+DCHAA KL+S+I R I+VRDRNRFH F G CSC YW
Sbjct: 695 PIRIVKNLRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCMGYW 745
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 4/160 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ ++GF ++ VCN L++MY KCGCL AR VF +M ER V +W+ M+ G + +
Sbjct: 110 LHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTML-GCYVRSK 168
Query: 62 A-KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP-QIEH 119
A EAL +M +G+K +GV I L+ G++ + GR + G ++
Sbjct: 169 AFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSM 228
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
++D+ + G L A + K + V W ++ GC
Sbjct: 229 TTALIDMYCKGGCLASAQRLFDRLS-KRSVVSWTVMIAGC 267
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 113/268 (42%), Gaps = 45/268 (16%)
Query: 2 VHEY--SNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
VH Y N + + + LIDMY K GCL A+R+F + +R+V +W+ MI G
Sbjct: 211 VHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRS 270
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYG-----I 113
+ E +FN+M+E + PN +T + L+ CG +G +D G+ F Y + +G +
Sbjct: 271 CRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALV 330
Query: 114 IPQIEHYG-CMVDLLSRAGF-------------LQEAYEFIR-------------NMPIK 146
I+ YG C +RA F L AY + N +K
Sbjct: 331 TALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVK 390
Query: 147 PNGVVWGALLGGCRVHKNIDLAEEASRQLD----QLDPLNNGYHVVLSNIYAEAERWEDV 202
PN V +LL C +DL + ++ ++D + L N+YA + DV
Sbjct: 391 PNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVI---LETALINMYA---KCGDV 444
Query: 203 ARVRKLMRNLGVKKTPGWSSITVDGVVH 230
R L + W+++ +H
Sbjct: 445 TIARSLFNEAMQRDIRMWNTMMAGFSMH 472
>gi|356573508|ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Glycine max]
Length = 629
Score = 356 bits (914), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 171/361 (47%), Positives = 242/361 (67%), Gaps = 11/361 (3%)
Query: 2 VHEYSNQS-GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
VH Y+ ++ G+ + V +L+DMY KCG + A VF M R V W+AM+ GLA+HG
Sbjct: 270 VHCYAVKAVGWDLGVMVGTSLVDMYAKCGRISAALMVFRHMPRRNVVAWNAMLCGLAMHG 329
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
K + F M+E +KP+ VTF+ LL +C H G V++G ++F+ + YGI P+IEHY
Sbjct: 330 MGKVVVEMFACMVE-EVKPDAVTFMALLSSCSHSGLVEQGWQYFHDLERAYGIRPEIEHY 388
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG L+EA + ++ +PI PN VV G+LLG C H + L E+ R+L Q+DP
Sbjct: 389 ACMVDLLGRAGRLEEAEDLVKKLPIPPNEVVLGSLLGACYAHGKLRLGEKIMRELVQMDP 448
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
LN YH++LSN+YA + + +RK+++N G++K PG SSI VDG +H F+AGD++HP
Sbjct: 449 LNTEYHILLSNMYALCGKADKANSLRKVLKNRGIRKVPGMSSIYVDGQLHRFIAGDKSHP 508
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLL-------DIEE--KEKEKFLYRHSEKLALT 291
+ I+ + ++ ++L GY+PNT+ +L D E +E E+ L+ HSEKLAL
Sbjct: 509 RTADIYMKLDDMICKLRLAGYVPNTNCQVLFGCSNGDDCMEAFEEVEQVLFTHSEKLALC 568
Query: 292 FGLMNTPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDY 351
FGLM+TP +P+ I KNLR+C+DCH+A K+ S+I REIVVRDR RFH F+ GSCSC DY
Sbjct: 569 FGLMSTPSSSPLCIFKNLRICQDCHSAIKIASDIYKREIVVRDRYRFHSFKQGSCSCSDY 628
Query: 352 W 352
W
Sbjct: 629 W 629
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 76/187 (40%), Gaps = 35/187 (18%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE-------------------------- 43
GF R+ +V N ++D YVKCG + ARRVF E+EE
Sbjct: 143 GFLRHTKVLNGVMDGYVKCGLVGEARRVFEEIEEPSVVSWTVVLEGVVKCEGVESGKVVF 202
Query: 44 -----RTVFTWSAMIQGLAIHGQAKEALTSFNKMI---EIGIKPNGVTFIGLLHACGHMG 95
R W+ +I+G G KEA +M+ G N +T +L AC G
Sbjct: 203 DEMPERNEVAWTVLIKGYVGSGFTKEAFLLLKEMVFGCGFGFGLNSITLCSVLSACSQSG 262
Query: 96 WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGAL 155
V GR G + +VD+ ++ G + A R+MP + N V W A+
Sbjct: 263 DVSVGRWVHCYAVKAVGWDLGVMVGTSLVDMYAKCGRISAALMVFRHMP-RRNVVAWNAM 321
Query: 156 LGGCRVH 162
L G +H
Sbjct: 322 LCGLAMH 328
>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
Length = 824
Score = 356 bits (913), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 232/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++G ++ V +L DMY KCG L+ A +F ++ W+ +I HG
Sbjct: 473 KLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHG 532
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++A+ F +M++ G+KP+ +TF+ LL AC H G VDEG F M T+YGI P ++HY
Sbjct: 533 HGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHY 592
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDL RAG L+ A FI++MP++P+ +WGALL CRVH N+DL + AS L +++P
Sbjct: 593 GCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEP 652
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ GYHV+LSN+YA A +WE V +R + G++KTPGWSS+ VD V F G++THP
Sbjct: 653 EHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQTHP 712
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
E++++ L + +K+ GY+P+ VL D+E+ EKE L HSE+LA+ F L+ TP
Sbjct: 713 MYEEMYRELTALHEKLKMVGYVPDHRFVLQDVEDDEKEHILMSHSERLAMAFALITTPAK 772
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IRI KNLRVC DCH+ K IS+I REI+VRD NRFH F+ G CSCGDYW
Sbjct: 773 TTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 824
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 4/149 (2%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
F +I + N ++ MY K G ++ AR VF + + V +W+ +I G A +G A EA+ +N
Sbjct: 380 FLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYN 439
Query: 71 KMIEIG--IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
M E G I N T++ +L AC G + +G + + + G+ + + D+
Sbjct: 440 IMEEEGGEISANQGTWVSVLPACSQAGALRQGMK-LHGRLLKNGLYLDVFVGTSLADMYG 498
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
+ G L +A +P + N V W L+
Sbjct: 499 KCGRLDDALSLFYQIP-RVNSVPWNTLIA 526
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 83/157 (52%), Gaps = 8/157 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + GF ++ V +LI +Y + G + AR +F EM R + +W+AMI G G
Sbjct: 171 KIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSG 230
Query: 61 QAKEALTSFNKMIEIGIKP-NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
AKEALT + G++ + VT + LL AC G + G +S + ++G+ ++
Sbjct: 231 NAKEALT-----LSDGLRAMDSVTVVSLLSACTEAGDFNRGVT-IHSYSIKHGLESELFV 284
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
++DL + G L++ + M ++ + + W +++
Sbjct: 285 SNKLIDLYAEFGSLKDCQKVFDRMYVR-DLISWNSII 320
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 1/157 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H YS + G + V N LID+Y + G L+ ++VF M R + +W+++I+ ++ Q
Sbjct: 269 IHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQ 328
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+ F +M I+P+ +T I L +G + R + + I
Sbjct: 329 PLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGN 388
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V + ++ G + A +P K + + W ++ G
Sbjct: 389 AVVVMYAKLGLVDSARAVFNWLPNK-DVISWNTIISG 424
>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 866
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 171/352 (48%), Positives = 232/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H S +SGF + V + L+ MY K G +E A VF +R + +W++MI G A HG
Sbjct: 515 QFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHG 574
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
K++L F +M ++ +G+TFIG++ AC H G V+EG+R+F M +Y I+P +EHY
Sbjct: 575 CGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHY 634
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDL SRAG L++A + I MP +W LL CRVH N+ L E A+ +L L P
Sbjct: 635 SCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQP 694
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+LSNIYA A W++ A+VRKLM VKK G+S I V F+AGD +HP
Sbjct: 695 QDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHP 754
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q+++I+ E+L +K GY P+T VL D+EE+ KE L +HSE+LA+ FGL+ TPPG
Sbjct: 755 QSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPG 814
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPI+I+KNLRVC DCH KLIS+I R+IVVRD NRFH F+ GSCSCGDYW
Sbjct: 815 TPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 866
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 85/158 (53%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + GF ++ V +L+DMY+K +E RVF EM + V +W++++ G +G
Sbjct: 113 QVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNG 172
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++AL F++M GIKPN TF +L G V++G + ++M + G+ I
Sbjct: 173 LNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKSGLDSTIFVG 231
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
MV++ S++ + +A +M + N V W +++ G
Sbjct: 232 NSMVNMYSKSLMVSDAKAVFDSMENR-NAVSWNSMIAG 268
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 92/184 (50%), Gaps = 7/184 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ + + V L D Y K G A ++F ++E+ + WSAM+ G A G
Sbjct: 413 QIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMG 472
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH-MGWVDEGRRFFYSMTTEYGIIPQIEH 119
+ A+ F ++ + G++PN TF +L+AC V++G++ F+S + + G +
Sbjct: 473 DIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQ-FHSCSIKSGFSNALCV 531
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASRQL 175
+V + ++ G ++ A E + + + V W +++ G H K++ + EE +
Sbjct: 532 SSALVTMYAKRGNIESANEVFKRQ-VDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKN 590
Query: 176 DQLD 179
+LD
Sbjct: 591 LELD 594
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/288 (21%), Positives = 116/288 (40%), Gaps = 21/288 (7%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH +SG I V N++++MY K + A+ VF ME R +W++MI G +G
Sbjct: 214 QVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNG 273
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA F +M G+K F ++ C ++ + ++ + + G +
Sbjct: 274 LDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQ-LHCQVIKNGSDFDLNIK 332
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL--DQL 178
++ S+ + +A++ M N V W A++ G + D A Q+ + +
Sbjct: 333 TALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGV 392
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
P + Y +L+ A +++ L+ + +P + D GD
Sbjct: 393 RPNHFTYSTILT-----ANAAVSPSQIHALVVKTNYENSPSVGTALSDSYSK---IGDAN 444
Query: 239 HPQAEKIFQM--------WEKLLDGMKLKGYIPNTSVVLLDIEEKEKE 278
+A KIF++ W +L G G I + L + ++ E
Sbjct: 445 --EAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVE 490
>gi|242094040|ref|XP_002437510.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
gi|241915733|gb|EER88877.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
Length = 653
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 172/353 (48%), Positives = 243/353 (68%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+ E +++SG RN+ V + L+DMY KCG ++ A RVF M+E+ V+T+S+MI GLA HG+
Sbjct: 301 IQEIADRSGLGRNVVVGSGLVDMYAKCGLIDEACRVFEGMQEKNVYTYSSMIVGLASHGR 360
Query: 62 AKEALTSFNKMIE-IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A +A+ FN M+ ++PN VTFIG+L AC H G V EGR +F M YGI+P +HY
Sbjct: 361 ANDAIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHY 420
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG + EA + +++M ++P+G VWGALLG CR+H N +A+ A++ L +L+P
Sbjct: 421 TCMVDLLGRAGLVIEALDLVKSMTVEPHGGVWGALLGACRIHGNTKVAKVAAQHLFKLEP 480
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSIT-VDGVVHEFVAGDETH 239
G +V+LSN A A W++V++VRKLMR G+KK P SS DG+VH+F AGD TH
Sbjct: 481 EGIGNYVLLSNTLASAGEWDEVSKVRKLMRIRGLKKDPAVSSFEGRDGLVHQFFAGDNTH 540
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P +I + +L +KL GY+P S V+ ++ ++EKE+ L HSEKLAL+FGL+
Sbjct: 541 PWMHEIKKTLLELRARLKLAGYVPVLSSVVYNVSDEEKERLLMGHSEKLALSFGLLTLES 600
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ IRI+KNLR+CEDCH +L+S++ EI+VRD RFH F+ G CSCG +W
Sbjct: 601 RSSIRIVKNLRICEDCHLFIRLVSKVEPIEIIVRDNMRFHHFRDGECSCGGFW 653
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 37/186 (19%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWS------------------- 50
GF ++ V N+LI YV CG + AR+V EM + V +W+
Sbjct: 177 GFDKHRFVENSLIGAYVACGDVGAARKVLDEMVVKDVISWTSIVAAYSRSRDMGSAEEVF 236
Query: 51 ------------AMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVD 98
AM+ G A + +AL +F +M G+ + V+ G + AC +G V
Sbjct: 237 ALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAGAGMPIDEVSLTGAISACAQLGAV- 295
Query: 99 EGRRFFY--SMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
RR + + G+ + +VD+ ++ G + EA M K N + +++
Sbjct: 296 --RRAVWIQEIADRSGLGRNVVVGSGLVDMYAKCGLIDEACRVFEGMQEK-NVYTYSSMI 352
Query: 157 GGCRVH 162
G H
Sbjct: 353 VGLASH 358
>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
Length = 611
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 169/352 (48%), Positives = 240/352 (68%), Gaps = 2/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+Y + ++V LIDMY KCG LE A VF +ME R WS M+ A HG
Sbjct: 261 IHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGY 320
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA++ F +M + G+KP+ VTF+G+L+AC H G V EG ++F SM EYGI+ I+HYG
Sbjct: 321 GREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMR-EYGIVSGIKHYG 379
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+ DLL+R+G L+ AY+FI +PIKP ++W LL C H ++D+ + ++ +LD
Sbjct: 380 CVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDS 439
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G +V+ SN+ A RWE++ VRKLM GV K PG SSI +D +VHEF AGD +HP
Sbjct: 440 HGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPH 499
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVL-LDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+++ +M +++++ +KL GY+PNTS V +++ E+EK L HSEKLA++FGL+NT PG
Sbjct: 500 SQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPG 559
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T +RI+KNLRVC DCH+ KL+S + NR I++RD NRFH F+ G CSCGDYW
Sbjct: 560 TTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 99/211 (46%), Gaps = 9/211 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H + ++G + V TLI+MY +CG + AR +F M+ V +++AMI
Sbjct: 159 QAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSS 218
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL F +M G+KP VT I +L AC +G ++ G R+ + + + ++
Sbjct: 219 LPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELG-RWIHDYIRKMRLDSLVKVN 277
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASRQ-- 174
++D+ ++ G L++A ++M + + W ++ H + I + EE +Q
Sbjct: 278 TALIDMYAKCGSLEDAIGVFQDMESR-DKQAWSVMMVAYANHGYGREAISMFEEMKKQGM 336
Query: 175 -LDQLDPLNNGYHVVLSNIYAEAERWEDVAR 204
D + L Y S + +E ++ D R
Sbjct: 337 KPDDVTFLGVLYACSHSGMVSEGLQYFDSMR 367
>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 572
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 167/339 (49%), Positives = 241/339 (71%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N+ V +LIDMYVK GCLE RVF M E+ ++++ MI GLAIHG+ KEAL F++MI
Sbjct: 234 NVVVKTSLIDMYVKSGCLEKGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMI 293
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
E G+ P+ V ++G+ AC H G V+EG + F SM E+ I P ++HYGCMVDLL R G L
Sbjct: 294 EEGLAPDDVVYVGVFSACSHAGLVEEGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGML 353
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIY 193
+EAYE I++M IKPN V+W +LL C+VH N+++ + A+ L L+ N+G ++VL+N+Y
Sbjct: 354 KEAYELIKSMSIKPNDVIWRSLLSACKVHHNLEIGKIAAENLFMLNQNNSGDYLVLANMY 413
Query: 194 AEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLL 253
A+A++W+DVA++R + + +TPG+S I V++FV+ D++ PQ I++M ++
Sbjct: 414 AKAQKWDDVAKIRTKLAERNLVQTPGFSLIEAKRKVYKFVSQDKSIPQWNIIYEMIHQME 473
Query: 254 DGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCE 313
+K +GYIP+TS VLLD++++EK++ L HS+KLA+ FGL++T G+P+RI +NLR+C
Sbjct: 474 WQLKFEGYIPDTSQVLLDVDDEEKKERLKFHSQKLAIAFGLIHTSEGSPLRITRNLRMCS 533
Query: 314 DCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
DCH K IS I REI VRDR RFH F+ GSCSC DYW
Sbjct: 534 DCHTYTKYISMIYEREITVRDRLRFHHFKNGSCSCKDYW 572
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + G ++ V N+LI+MY KCG ++ A VF M+E++V +WSA+I A
Sbjct: 119 QVHGHVFKMGLEGDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVE 178
Query: 61 QAKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGR---RFFYSMTTEYGIIPQ 116
E L KM G + T + +L AC H+G D G+ +E ++ +
Sbjct: 179 MWNECLMLLGKMSSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVK 238
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++G L++ +NM K N + ++ G +H
Sbjct: 239 TS----LIDMYVKSGCLEKGLRVFKNMSEK-NRYSYTVMISGLAIH 279
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 8/136 (5%)
Query: 26 VKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFI 85
K G ++ A +F +++E + F ++ MI+G + +EAL + MIE G++P+ T+
Sbjct: 43 TKWGSMDYACSIFTQIDEPSSFDYNTMIRGNVNDMKLEEALLLYVDMIERGVEPDKFTYP 102
Query: 86 GLLHACGHMGWVDEGRRF---FYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRN 142
+L AC +G VDEG + + M E +I Q ++++ + G ++ A +
Sbjct: 103 FVLKACSLLGVVDEGIQVHGHVFKMGLEGDVIVQ----NSLINMYGKCGEIKNACDVFNG 158
Query: 143 MPIKPNGVVWGALLGG 158
M K W A++G
Sbjct: 159 MDEKSVA-SWSAIIGA 173
>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
Length = 605
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 229/351 (65%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + F N+ V LIDMY KCG + AR +F M E+ TW+AMI G +HG
Sbjct: 255 VHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGH 314
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL F M+ +KP G+TF+ +L+AC H G V EG F++M ++G P EHY
Sbjct: 315 GQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYA 374
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+L RAG L++A EFI+ MP++P VWGALLG C +HK+ +LA AS +L +LDP
Sbjct: 375 CMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTNLAHVASEKLFELDPE 434
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+V++SNIY+ ++ A VR++ + + KTPG + I + V H F +GD++HPQ
Sbjct: 435 NIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEIGQVPHVFTSGDQSHPQ 494
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++ I+ +KL M G+ T+ VL D+EE+EKE + HSEKLA+ FGL++T PG
Sbjct: 495 SKAIYAELDKLTGKMTEAGFQTETTTVLHDLEEEEKELTMKVHSEKLAIAFGLISTEPGA 554
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC DCH K +S+I R IVVRD NRFH F+ G CSCGDYW
Sbjct: 555 EIRIIKNLRVCLDCHNWTKFLSKITKRVIVVRDANRFHHFKDGLCSCGDYW 605
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 2/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G + V L +Y + + AR++F E E+T+ +W+AMI G +G
Sbjct: 154 IHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGL 213
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A++ F M + + PN VT +L AC +G + G + +S+ +
Sbjct: 214 TDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLG-EWVHSLIKSNRFESNVYVST 272
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++ G + A E MP K N V W A++ G +H
Sbjct: 273 ALIDMYAKCGSITVARELFDLMPEK-NEVTWNAMISGYGLH 312
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 49/81 (60%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
+ GF ++ + LI ++ KCG +E AR +F E+ ++ + + +AMI G +G+ ++++
Sbjct: 59 KCGFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVR 118
Query: 68 SFNKMIEIGIKPNGVTFIGLL 88
F +++ G + + T +GL+
Sbjct: 119 LFKELLSSGERVSSSTIVGLI 139
>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
Length = 611
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 169/352 (48%), Positives = 240/352 (68%), Gaps = 2/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+Y + ++V LIDMY KCG LE A VF +ME R WS M+ A HG
Sbjct: 261 IHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGY 320
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA++ F +M + G+KP+ VTF+G+L+AC H G V EG ++F SM EYGI+ I+HYG
Sbjct: 321 GREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMR-EYGIVSGIKHYG 379
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+ DLL+R+G L+ AY+FI +PIKP ++W LL C H ++D+ + ++ +LD
Sbjct: 380 CVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDS 439
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G +V+ SN+ A RWE++ VRKLM GV K PG SSI +D +VHEF AGD +HP
Sbjct: 440 HGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPH 499
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVL-LDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+++ +M +++++ +KL GY+PNTS V +++ E+EK L HSEKLA++FGL+NT PG
Sbjct: 500 SQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPG 559
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T +RI+KNLRVC DCH+ KL+S + NR I++RD NRFH F+ G CSCGDYW
Sbjct: 560 TTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 99/211 (46%), Gaps = 9/211 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H + ++G + V TLI+MY +CG + AR +F M+ V +++AMI
Sbjct: 159 QAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSS 218
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL F +M G+KP VT I +L AC +G ++ G R+ + + + ++
Sbjct: 219 LPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELG-RWIHDYIRKMRLDSLVKVN 277
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASRQ-- 174
++D+ ++ G L++A ++M + + W ++ H + I + EE +Q
Sbjct: 278 TALIDMYAKCGSLEDAIGVFQDMESR-DKQAWSVMMVAYANHGYGREAISMFEEMKKQGM 336
Query: 175 -LDQLDPLNNGYHVVLSNIYAEAERWEDVAR 204
D + L Y S + +E ++ D R
Sbjct: 337 KPDDVTFLGVLYACSHSGMVSEGLQYFDSMR 367
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 92/245 (37%), Gaps = 50/245 (20%)
Query: 31 LEGARRVFIEMEERTVFTW-SAMIQGLAIHGQ----AKEALTSFNKMIEIGIKPNGVTFI 85
L AR+VF + W + +++G A G A+EA F +M+E G+ P+ TF+
Sbjct: 83 LAYARQVFDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFV 142
Query: 86 GLLHACGHMGWVDEGRR------------------FFYSMTTEYGIIPQ----------- 116
LL AC +EGR+ +M E G +
Sbjct: 143 SLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGE 202
Query: 117 -IEHYGCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGCRVHKNIDLAE--- 169
+ Y M+ R+ EA R M +KP V ++L C + ++L
Sbjct: 203 CVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIH 262
Query: 170 --EASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDG 227
+LD L +N L ++YA+ ED V + M + + WS + V
Sbjct: 263 DYIRKMRLDSLVKVNTA----LIDMYAKCGSLEDAIGVFQDMES---RDKQAWSVMMVAY 315
Query: 228 VVHEF 232
H +
Sbjct: 316 ANHGY 320
>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Brachypodium distachyon]
Length = 796
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 173/352 (49%), Positives = 229/352 (65%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+ N+ V LIDMYVKCG + AR +F M+ + V +W+ MI G +HGQ
Sbjct: 445 VHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQ 504
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL + M++ + P TF+ +L+AC H G V EG F SMT++YGI P IEH
Sbjct: 505 GAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCT 564
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGV-VWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG L+EA+E I P G +WGALLG C VHK+ DLA+ AS++L +L+P
Sbjct: 565 CMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLFELEP 624
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N GY+V+LSN+Y +++ + A VR+ ++ + KTPG + I + H F+AGD HP
Sbjct: 625 ENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHVFMAGDRAHP 684
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q++ I+ EKL M GY P+T L D+EE+EKE + HSEKLA+ FGL+NT PG
Sbjct: 685 QSDAIYLYLEKLTAKMIEAGYRPDTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLNTEPG 744
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IRI+KNLRVC DCH A K+IS++ R IVVRD +RFH F+ G CSCGDYW
Sbjct: 745 TEIRIIKNLRVCLDCHNATKIISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 796
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 101/222 (45%), Gaps = 10/222 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + ++G N V L +Y + ++ ARR F M E+T+ +W+AMI G A +G
Sbjct: 344 LHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGL 403
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ A+ F +M + ++PN +T L AC +G + G ++ + + + +
Sbjct: 404 TEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLG-KWVHKIIANEKLELNVYVMT 462
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP- 180
++D+ + G + EA +M K N V W ++ G +H AE D +D
Sbjct: 463 ALIDMYVKCGSIAEARCIFDSMDNK-NVVSWNVMISGYGLHGQG--AEALKLYKDMMDAH 519
Query: 181 LNNGYHVVLSNIYAEAERW---EDVARVRKLMRNLGVKKTPG 219
L+ LS +YA + E R + + G+ TPG
Sbjct: 520 LHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGI--TPG 559
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/294 (20%), Positives = 120/294 (40%), Gaps = 58/294 (19%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + G ++ V LI +Y KCG +E AR +F ME + T++A+I G +I+G
Sbjct: 243 VHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGM 302
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGL-----------LHACGHMGWV------------- 97
++ F +++ +G++P+ T + L L C H V
Sbjct: 303 VGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTA 362
Query: 98 -----------DEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP-- 144
D RR F +M + +E + M+ ++ G + A + M
Sbjct: 363 LTTLYCRFNDMDSARRAFDAMPEK-----TMESWNAMISGYAQNGLTEMAVALFQQMQAL 417
Query: 145 -IKPNGVVWGALLGGCRVHKNIDLAEEASRQL--DQLDPLNNGYHVVLSNIYAEAERWED 201
++PN + + L C + L + + + ++L+ LN L ++Y +
Sbjct: 418 NVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKLE-LNVYVMTALIDMYV---KCGS 473
Query: 202 VARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDG 255
+A R + ++ K W+ + ++G H Q + ++++ ++D
Sbjct: 474 IAEARCIFDSMDNKNVVSWNVM---------ISGYGLHGQGAEALKLYKDMMDA 518
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 75/175 (42%), Gaps = 7/175 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + SGF + V + L +Y AR+VF + W+ ++ GL+
Sbjct: 145 LHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLS---- 200
Query: 62 AKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL +F +M G ++P+ T +L A + G R ++ + G+
Sbjct: 201 GSEALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMG-RCVHAFGEKCGLAQHEHVV 259
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
++ L ++ G ++ A M P+ V + AL+ G ++ + + E ++L
Sbjct: 260 TGLISLYAKCGDMECARHLFDRME-GPDLVTYNALISGYSINGMVGSSVELFKEL 313
>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
Length = 671
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 169/352 (48%), Positives = 240/352 (68%), Gaps = 2/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+Y + ++V LIDMY KCG LE A VF +ME R WS M+ A HG
Sbjct: 261 IHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGY 320
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA++ F +M + G+KP+ VTF+G+L+AC H G V EG ++F SM EYGI+ I+HYG
Sbjct: 321 GREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMR-EYGIVSGIKHYG 379
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+ DLL+R+G L+ AY+FI +PIKP ++W LL C H ++D+ + ++ +LD
Sbjct: 380 CVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDS 439
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G +V+ SN+ A RWE++ VRKLM GV K PG SSI +D +VHEF AGD +HP
Sbjct: 440 HGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPH 499
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVL-LDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+++ +M +++++ +KL GY+PNTS V +++ E+EK L HSEKLA++FGL+NT PG
Sbjct: 500 SQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPG 559
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T +RI+KNLRVC DCH+ KL+S + NR I++RD NRFH F+ G CSCGDYW
Sbjct: 560 TTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 87/178 (48%), Gaps = 6/178 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H + ++G + V TLI+MY +CG + AR +F M+ V +++AMI
Sbjct: 159 QAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSS 218
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL F +M G+KP VT I +L AC +G ++ G R+ + + + ++
Sbjct: 219 LPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELG-RWIHDYIRKMRLDSLVKVN 277
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASRQ 174
++D+ ++ G L++A ++M + + W ++ H + I + EE +Q
Sbjct: 278 TALIDMYAKCGSLEDAIGVFQDMESR-DKQAWSVMMVAYANHGYGREAISMFEEMKKQ 334
>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
Length = 667
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 164/352 (46%), Positives = 242/352 (68%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y ++G+ + V N L+D+YVKCG L AR +F + + + +W+ MI G +HG
Sbjct: 316 IHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGY 375
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ +FN+M + GI+P+ V+FI +L+AC H G +++G RFFY M ++ I P++EHY
Sbjct: 376 GNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYA 435
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLLSR G L +AY+FI +PI P+ +WGALL GCR++ +I+LAE+ + ++ +L+P
Sbjct: 436 CMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPE 495
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAG-DETHP 240
N GY+V+L+NIYAEAE+WE+V R+R+ + G++K PG S I + G V+ FV+G + +HP
Sbjct: 496 NTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHP 555
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++KI + +K+ MK +GY P T L++ +E +KE L HSEKLA+ FGL+ PP
Sbjct: 556 HSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPR 615
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR+ KNLRVC DCH K +S+ REIV+RD NRFH F+ G CSC +W
Sbjct: 616 KTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 667
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + +S F R I NTL+DMY KCG L+GA RVF +M ER V +W++MI G G
Sbjct: 135 VHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGW 194
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ A+ +M + G+K + V +LHAC G +D G+ + + +
Sbjct: 195 SDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKD-VHDYIKANNMASNLFVCN 253
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
++D+ ++ G ++ A M +K + + W ++G
Sbjct: 254 ALMDMYAKCGSMEGANSVFSTMVVK-DIISWNTMVG 288
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V EY+ F+ +I + +++ ++ E A +F ++ +R V +W++MI G +G
Sbjct: 34 VSEYAKIGDFKESICLFKIMVEKGIEGKRSESASELFDKLCDRDVISWNSMISGYVSNGL 93
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ L + +M+ +GI + T I +L C G + G+ +S+ + +I
Sbjct: 94 TERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGTLSLGKA-VHSLAIKSSFERRINFSN 152
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ S+ G L A M + N V W +++ G
Sbjct: 153 TLLDMYSKCGDLDGALRVFEKMG-ERNVVSWTSMIAG 188
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
L+ Y CG L+ RRVF ME++ V+ W+ M+ A G KE++ F M+E GI+
Sbjct: 2 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIE 59
>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
Length = 770
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 171/352 (48%), Positives = 232/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H S +SGF + V + L+ MY K G +E A VF +R + +W++MI G A HG
Sbjct: 419 QFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHG 478
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
K++L F +M ++ +G+TFIG++ AC H G V+EG+R+F M +Y I+P +EHY
Sbjct: 479 CGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHY 538
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDL SRAG L++A + I MP +W LL CRVH N+ L E A+ +L L P
Sbjct: 539 SCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQP 598
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+LSNIYA A W++ A+VRKLM VKK G+S I V F+AGD +HP
Sbjct: 599 QDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHP 658
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q+++I+ E+L +K GY P+T VL D+EE+ KE L +HSE+LA+ FGL+ TPPG
Sbjct: 659 QSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPG 718
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPI+I+KNLRVC DCH KLIS+I R+IVVRD NRFH F+ GSCSCGDYW
Sbjct: 719 TPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 770
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 85/158 (53%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + GF ++ V +L+DMY+K +E RVF EM + V +W++++ G +G
Sbjct: 113 QVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNG 172
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++AL F++M GIKPN TF +L G V++G + ++M + G+ I
Sbjct: 173 LNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKSGLDSTIFVG 231
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
MV++ S++ + +A +M + N V W +++ G
Sbjct: 232 NSMVNMYSKSLMVSDAKAVFDSMENR-NAVSWNSMIAG 268
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 92/183 (50%), Gaps = 11/183 (6%)
Query: 7 NQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE-RTVFTWSAMIQGLAIHGQAKEA 65
N S F NI+ L+ Y KC ++ A ++F M + V +W+A+I G +G+ A
Sbjct: 323 NGSDFDLNIKT--ALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRA 380
Query: 66 LTSFNKMI-EIGIKPNGVTFIGLLHACGH-MGWVDEGRRFFYSMTTEYGIIPQIEHYGCM 123
+ F +M E G++PN TF +L+AC V++G++ F+S + + G + +
Sbjct: 381 MNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQ-FHSCSIKSGFSNALCVSSAL 439
Query: 124 VDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASRQLDQLD 179
V + ++ G ++ A E + + + V W +++ G H K++ + EE + +LD
Sbjct: 440 VTMYAKRGNIESANEVFKRQ-VDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELD 498
Query: 180 PLN 182
+
Sbjct: 499 GIT 501
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 1/158 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH +SG I V N++++MY K + A+ VF ME R +W++MI G +G
Sbjct: 214 QVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNG 273
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA F +M G+K F ++ C ++ + ++ + + G +
Sbjct: 274 LDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQ-LHCQVIKNGSDFDLNIK 332
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ S+ + +A++ M N V W A++ G
Sbjct: 333 TALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISG 370
>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
Length = 747
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 162/353 (45%), Positives = 239/353 (67%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF-IEMEERTVFTWSAMIQGLAIH 59
++H + +SG + V N L MY K G + GAR+VF + + R +W++MI LA H
Sbjct: 395 QIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQH 454
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G +EA+ F +M+ +GIKP+ +T++G+L AC H G V++GR +F M + I P + H
Sbjct: 455 GLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSH 514
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CMVDL RAG LQEAY+F+ NMP++P+ + WG+LL C+V+KN+DLA+ A+ +L ++
Sbjct: 515 YACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIE 574
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N+G + L+N+Y+ +W+D A++RKLM+ GVKK G S + + H F D H
Sbjct: 575 PNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLH 634
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
PQ ++I++M +K+ +K G+ P+T VL D+E + K++ L HSEKLA+ FG+++TP
Sbjct: 635 PQKDEIYKMMDKIWKEIKKMGFAPDTESVLHDLEVEVKDQILRYHSEKLAIAFGIISTPE 694
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T +RIMKNLRVC DCH A K IS++V+REI+VRD RFH F+ GSCSC DYW
Sbjct: 695 NTTLRIMKNLRVCNDCHNAIKFISKLVDREIIVRDATRFHHFKDGSCSCKDYW 747
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 99/236 (41%), Gaps = 27/236 (11%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + G + V N+L++MY K G L+ A+ VF M+ R +W+AMI G
Sbjct: 128 KVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCG 187
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ AL F + E I V++ ++ C G+ +E +FF S+ + + P
Sbjct: 188 RVDLALAQFELLSERDI----VSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSL 243
Query: 121 GCMVDL---LSRAGFLQEAYEFIRNMPIKPNGVVWGALL------GGCRVHKNIDLAEEA 171
+ L + F ++ + +I +G V AL+ GG + + I + +
Sbjct: 244 ASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRI-IEQSG 302
Query: 172 SRQLD--QLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITV 225
LD L NGY + D+ R++ +L W+++ V
Sbjct: 303 ISDLDVIAFTALLNGY-----------VKLGDITPARQIFNSLKDPDVVAWTAMIV 347
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 82/176 (46%), Gaps = 7/176 (3%)
Query: 8 QSGFRR-NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEAL 66
QSG ++ L++ YVK G + AR++F +++ V W+AMI G +G +A+
Sbjct: 300 QSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAI 359
Query: 67 TSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYS-MTTEYGIIPQIEHYGCMVD 125
F M+ G +PN T +L A + ++ G++ S + + + P + + +
Sbjct: 360 EVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGN--ALTT 417
Query: 126 LLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+ ++AG + A + + + V W +++ H L EEA +Q+ L
Sbjct: 418 MYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQH---GLGEEAIELFEQMLTL 470
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 8/153 (5%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NT++ Y K G LE A +VF + R +W+ +I G G+ ++A+ F M++ +
Sbjct: 45 NTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVL 104
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P T +L +C G G++ +S + G+ + ++++ ++ G L+ A
Sbjct: 105 PTQFTLTNVLASCAATGSRGIGKK-VHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKV 163
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKN---IDLA 168
M ++ N W A++ +H N +DLA
Sbjct: 164 VFDRMKLR-NTSSWNAMIS---LHMNCGRVDLA 192
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 174/351 (49%), Positives = 243/351 (69%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y++++GF R + + N LIDMY KCG L AR VF M + V +WS+MI A+HG
Sbjct: 371 IHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGD 430
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A A+ F++M E I+PNGVTFIG+L+AC H G V+EG++FF SM E+ I PQ EHYG
Sbjct: 431 ADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYG 490
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL RA L++A E I MP PN ++WG+L+ C+ H I+L E A+ +L +L+P
Sbjct: 491 CMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPD 550
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G VVLSNIYA+ +RW+DV VRKLM++ GV K S I V+ VH F+ D H Q
Sbjct: 551 HDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYHKQ 610
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I++ + ++ +KL GY P+TS +L+D+EE+EK++ + HSEKLAL +GL+ +
Sbjct: 611 SDEIYKKLDAVVSQLKLVGYTPSTSGILVDLEEEEKKEVVLWHSEKLALCYGLIGERKES 670
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLR+CEDCH+ KL+S++ EIV+RDR RFH F G CSC DYW
Sbjct: 671 CIRIVKNLRICEDCHSFMKLVSKVHRIEIVMRDRTRFHHFNGGICSCRDYW 721
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 90/198 (45%), Gaps = 33/198 (16%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCL------------------------------ 31
+H++ +GFR + +L++MY CG +
Sbjct: 239 IHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGM 298
Query: 32 -EGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90
+ AR +F M E+ + WSAMI G A Q EAL FN+M I P+ +T + ++ A
Sbjct: 299 VQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISA 358
Query: 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGV 150
C ++G + + ++ ++ + G + ++D+ ++ G L +A E NMP K N +
Sbjct: 359 CANVGALVQA-KWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRK-NVI 416
Query: 151 VWGALLGGCRVHKNIDLA 168
W +++ +H + D A
Sbjct: 417 SWSSMINAFAMHGDADSA 434
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 3/158 (1%)
Query: 2 VHEYSNQSGF-RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+H +++ GF + + + LI MY CG + AR +F +M R V TW+ MI G + +
Sbjct: 137 IHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNA 196
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
L + +M G +P+ + +L AC H G + G+ + + G
Sbjct: 197 HYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKA-IHQFIKDNGFRVGSHIQ 255
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V++ + G + A E +P K + VV A+L G
Sbjct: 256 TSLVNMYANCGAMHLAREVYDQLPSK-HMVVSTAMLSG 292
>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Vitis vinifera]
Length = 703
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 171/353 (48%), Positives = 237/353 (67%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH +S F ++ V + LI MYVKCG L AR++F + + W+++I G A HG
Sbjct: 351 QVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHG 410
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F++M G+ +GVTF+G+L AC + G V EG F SM ++Y + P+ EHY
Sbjct: 411 LVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHY 470
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG + +A + I+ MP++ + ++WGALLG CR H N++LAE A+++L QL+P
Sbjct: 471 ACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEP 530
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET-H 239
N G +++LSNIYA RW DVA +R+ MR V K+PG S I V+ VH F G T H
Sbjct: 531 KNAGPYILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVHMFTGGVSTKH 590
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ I +M EKL ++ GY P++S VL D++E+EK + L HSE+LA+ FGL+ P
Sbjct: 591 PELSSIMKMLEKLDGMLREAGYYPDSSFVLHDVDEEEKVRSLGHHSERLAVAFGLLKVPE 650
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIR+MKNLRVC DCH+A KLI++I REI++RD NRFH F+ G CSC DYW
Sbjct: 651 GMPIRVMKNLRVCGDCHSAIKLIAKITGREIILRDANRFHHFKDGFCSCRDYW 703
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 109/251 (43%), Gaps = 20/251 (7%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N+ I Y + G +E ARRVF EM ++ + +W++M+ G + + +EA F+KM E
Sbjct: 20 NSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPE---- 75
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
N V++ GL+ V E R+ F +M + + MV + G + EA
Sbjct: 76 RNTVSWNGLISGYVKNRMVSEARKAFDTMPER-----NVVSWTAMVRGYVQEGLVSEAET 130
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAER 198
MP K N V W +LGG + ID A R L + P+ + V +N+ + +
Sbjct: 131 LFWQMPEK-NVVSWTVMLGGLIQVRRIDEA----RGLFDIMPVKD--VVARTNMISGYCQ 183
Query: 199 WEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEF---VAGDETHPQAEKIFQMWEKLLDG 255
+A R+L + + W+++ + G V VA EK W +L G
Sbjct: 184 EGRLAEARELFDEMPRRNVISWTTM-ISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMG 242
Query: 256 MKLKGYIPNTS 266
G I S
Sbjct: 243 YTQGGRIEEAS 253
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 14/171 (8%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN N LI YVK + AR+ F M ER V +W+AM++G G EA T F +M
Sbjct: 76 RNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQM 135
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E N V++ +L + +DE R F M + + M+ + G
Sbjct: 136 PE----KNVVSWTVMLGGLIQVRRIDEARGLFDIMP-----VKDVVARTNMISGYCQEGR 186
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183
L EA E MP + N + W ++ G + +D+A R+L ++ P N
Sbjct: 187 LAEARELFDEMP-RRNVISWTTMISGYVQNGQVDVA----RKLFEVMPEKN 232
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 5/159 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+ + CN +I + + G + AR+VF ++ E+ TWSAMI+ G EAL F M
Sbjct: 262 KAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALM 321
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
G++ N + I +L C + +D GR+ ++ + + ++ + + G
Sbjct: 322 QREGVQSNFPSLISVLSVCASLASLDHGRQ-VHAELVKSQFDSDVFVASVLITMYVKCGD 380
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
L +A + K + V+W +++ G H L EEA
Sbjct: 381 LVKARQIFDRFSPK-DIVMWNSIITGYAQH---GLVEEA 415
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 116/286 (40%), Gaps = 38/286 (13%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
RRN+ T+I YV+ G ++ AR++F M E+ +W+AM+ G G+ +EA F+
Sbjct: 199 RRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEASELFDA 258
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M + +G G G V + R+ F + + + M+ + R G
Sbjct: 259 MPVKAVVACNAMILGF----GQNGEVAKARQVFDQIREK-----DDGTWSAMIKVYERKG 309
Query: 132 FLQEA---YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL--DQLDPLNNGYH 186
F EA + ++ ++ N ++L C ++D + +L Q D +
Sbjct: 310 FEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDS-DVFVA 368
Query: 187 VVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIF 246
VL +Y + D+ + R++ K W+SI + G H E+
Sbjct: 369 SVLITMYVKC---GDLVKARQIFDRFSPKDIVMWNSI---------ITGYAQHGLVEEAL 416
Query: 247 QMWEKL------LDGMKLKGYIPNTSVV-----LLDIEEKEKEKFL 281
Q++ ++ DG+ G + S L+I E K K+L
Sbjct: 417 QVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYL 462
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 171/348 (49%), Positives = 242/348 (69%), Gaps = 6/348 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+ SN S R +LIDMY KCG +E A++VF M R++ +W+AMI G A+HG
Sbjct: 365 RLKGVSNPSSLR------TSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHG 418
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A A F++M + GI+P+ +TF+GLL AC H G +D GR F SMT +Y I P++EHY
Sbjct: 419 RANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHY 478
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCM+DLL +G +EA E I +M + P+GV+W +LL C++H N++L E ++ L +++P
Sbjct: 479 GCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEP 538
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G +V+LSNIYA A RW +VA+ R L+ + G+KK PG SSI +D VVHEF+ GD+ HP
Sbjct: 539 KNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHP 598
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ M E++ ++ G++P+TS VL ++EE+ KE L HSEKLA+ FGL++T PG
Sbjct: 599 RNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPG 658
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSC 348
T + I+KNLRVC +CH A KLIS+I REI+ RDR RFH F G CSC
Sbjct: 659 TKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFXDGVCSC 706
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 2/163 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + GF N+++ N LID+Y+KCG +E A +F + + V +W+ +I G
Sbjct: 256 QVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMN 315
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY-GIIPQIEH 119
KEAL F +M+ G PN VT + +L AC H+G +D GR + G+
Sbjct: 316 LYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSL 375
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++ G ++ A + +M + + W A++ G +H
Sbjct: 376 RTSLIDMYAKCGDIEAAQQVFDSM-LNRSLSSWNAMIFGFAMH 417
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 83/159 (52%), Gaps = 5/159 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ LI Y G + A+++F E+ + V +W+A+I G A G KEAL F +M
Sbjct: 167 RDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEM 226
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
++ +KP+ T + +L AC ++ GR+ +S ++G ++ ++DL + G
Sbjct: 227 MKTNVKPDESTMVTVLSACAQSASIELGRQ-VHSWIDDHGFGSNLKIVNALIDLYIKCGE 285
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
++ A + K + + W L+GG + +++L +EA
Sbjct: 286 VETASGLFEGLSYK-DVISWNTLIGG---YTHMNLYKEA 320
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 34/190 (17%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEG---ARRVFIEMEERTVFTWSAMIQGLAI 58
+H ++G + LI+ V +G A VF ++E + W+ M +G A+
Sbjct: 21 IHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWNTMFRGHAL 80
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF--------------- 103
AL + MI +G+ PN TF LL AC EG++
Sbjct: 81 SSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYV 140
Query: 104 ---FYSMTTEYG-------IIPQIEH-----YGCMVDLLSRAGFLQEAYEFIRNMPIKPN 148
+M + G + Q H Y ++ + G++ A + +P+K +
Sbjct: 141 HTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVK-D 199
Query: 149 GVVWGALLGG 158
V W AL+ G
Sbjct: 200 VVSWNALISG 209
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 169/352 (48%), Positives = 244/352 (69%), Gaps = 6/352 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+ +N S R +LIDMY KCG +E A++VF + R++ +W+AMI G A+HG
Sbjct: 365 RLKGVANASSHR------TSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHG 418
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A A F++M + I+P+ +TF+GLL AC H G +D GR F SM +Y I P++EHY
Sbjct: 419 RANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHY 478
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCM+DLL +G +EA E I M ++P+GV+W +LL C+++ N++L E ++ L +++P
Sbjct: 479 GCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEP 538
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +V+LSNIYA A RW +VA++R L+ + G+KK PG SSI +D VVHEF+ GD+ HP
Sbjct: 539 KNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHP 598
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ M E++ ++ G++P+TS VL ++EE+ KE L HSEKLA+ FGL++T PG
Sbjct: 599 RNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPG 658
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T + I+KNLRVC +CH A KLIS+I REI+ RDR RFH F+ G CSC DYW
Sbjct: 659 TKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 8/172 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + GF N+++ N LID+Y+KCG +E A +F + + V +W+ +I G
Sbjct: 256 QVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMN 315
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY-GIIPQIEH 119
KEAL F +M+ G PN VT + +L AC H+G ++ GR + G+ H
Sbjct: 316 LYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSH 375
Query: 120 YGCMVDLLSRAGFL---QEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++D+ ++ G + Q+ ++ I N + W A++ G +H + A
Sbjct: 376 RTSLIDMYAKCGDIEAAQQVFDSILNRSLSS----WNAMIFGFAMHGRANAA 423
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 83/159 (52%), Gaps = 5/159 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ LI Y G + A+++F E+ + V +W+AMI G A G KEAL F +M
Sbjct: 167 RDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEM 226
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
++ ++P+ T + ++ AC ++ GR+ +S ++G ++ ++DL + G
Sbjct: 227 MKTNVRPDESTMVSVVSACAQSASIELGRQ-VHSWIDDHGFGSNLKIVNALIDLYIKCGE 285
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
++ A + K + + W L+GG + +++L +EA
Sbjct: 286 VETACGLFEGLSYK-DVISWNTLIGG---YTHMNLYKEA 320
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 34/190 (17%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEG---ARRVFIEMEERTVFTWSAMIQGLAI 58
+H ++G + LI+ V +G A VF ++E + W+ M +G A+
Sbjct: 21 IHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 80
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF--------------- 103
AL + MI +G+ PN TF LL +C EG++
Sbjct: 81 SSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYV 140
Query: 104 ---FYSMTTEYG-------IIPQIEH-----YGCMVDLLSRAGFLQEAYEFIRNMPIKPN 148
SM + G + Q H Y ++ + G++ A + +PIK +
Sbjct: 141 HTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIK-D 199
Query: 149 GVVWGALLGG 158
V W A++ G
Sbjct: 200 VVSWNAMISG 209
>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
lyrata]
gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
lyrata]
Length = 886
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 238/352 (67%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ ++ ++ V + L+DMY KCGCL+ +R+VF ++ R V TW+ ++ +HG
Sbjct: 535 IHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGN 594
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+++A+ M+ G+KPN VTFI + AC H G V+EG + FY+M +YG+ P +HY
Sbjct: 595 SQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYA 654
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGV-VWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL RAG ++EAY+ I +P + W +LLG CR+H N+++ E A++ L QL+P
Sbjct: 655 CVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEP 714
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++V+L+NIY+ A W VR+ M+ GV+K PG S I VH+FVAGD +HP
Sbjct: 715 NVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIEHGDEVHKFVAGDSSHP 774
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q+EK+ E L + M+ +GYIP+TS VL ++EE EKE L HSEKLA+ FG++NT PG
Sbjct: 775 QSEKLRGYLETLWERMRKEGYIPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPG 834
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IR+ KNLRVC DCH A K IS++V+REI++RD RFH F+ G+CSCGDYW
Sbjct: 835 TIIRVAKNLRVCNDCHLATKFISKVVDREIILRDVRRFHHFKNGTCSCGDYW 886
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 92/185 (49%), Gaps = 13/185 (7%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G R+ V N L+DMY + G ++ A+R+F +ME+R + TW+ +I G +
Sbjct: 423 IHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSER 482
Query: 62 AKEALTSFNKM-----------IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE 110
++AL +KM + +KPN +T + +L +C + + +G+ ++ +
Sbjct: 483 HEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKE-IHAYAIK 541
Query: 111 YGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
+ + +VD+ ++ G LQ + + +PI+ N + W ++ +H N A +
Sbjct: 542 NNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIR-NVITWNVIVMAYGMHGNSQDAID 600
Query: 171 ASRQL 175
R +
Sbjct: 601 MLRMM 605
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y + G N + NTL+ MY K G L ++ + E R + TW+ ++ L +
Sbjct: 219 QVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNE 277
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF 103
Q EAL +M+ G++P+G T +L AC H+ + G+
Sbjct: 278 QFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKEL 320
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 4/159 (2%)
Query: 2 VHEYSNQSG-FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+H Y+ ++G N V + L+DMY C + RVF M +R + W+AMI G A +
Sbjct: 320 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNE 379
Query: 61 QAKEALTSFNKMIE-IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+EAL F +M E G+ N T G++ AC G + + + + G+
Sbjct: 380 YDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSK-KEAIHGFVVKRGLDRDRFV 438
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ SR G + A M + + V W ++ G
Sbjct: 439 QNALMDMYSRLGKIDIAKRIFGKMEDR-DLVTWNTIITG 476
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 1 RVHEYSNQSGFR-RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
++H + + G+ ++ V NTL+++Y KCG +VF + ER +W+++I L
Sbjct: 114 QIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSF 173
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH 93
+ + AL +F M++ ++P+ T + + AC +
Sbjct: 174 EKWEMALEAFRCMLDEDVEPSSFTLVSVALACSN 207
>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
Length = 534
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 171/342 (50%), Positives = 230/342 (67%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
+ +++ + N L+DMY KCG LE A VF+ M E+ V +WS MI GLA +G +KEAL F
Sbjct: 193 YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFE 252
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
M +GIKPN VT +G+L AC H G V+EG +F+SM +GI P EHYGCM+DLL RA
Sbjct: 253 SMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRA 312
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190
G L EA + I M +P+ V W ALL CRVH+N+D+A A++Q+ +LDP + G +V+LS
Sbjct: 313 GRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQDAGTYVLLS 372
Query: 191 NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWE 250
NIYA +RW DVA VR+ M N G+KK PG S I V +H F+ GD +HPQ +I
Sbjct: 373 NIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILGDRSHPQIREINIQLN 432
Query: 251 KLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLR 310
+L+ + GY+P+T+ VL D+E ++ + L HSEKLA+ FGLM+ P G IRI KNLR
Sbjct: 433 QLIYKLMGVGYVPDTNFVLQDLEGEQMQDSLRYHSEKLAIVFGLMSLPRGQTIRIRKNLR 492
Query: 311 VCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+C DCH KL++++ R IV+RD R+H FQ G CSCGD+W
Sbjct: 493 ICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLCSCGDFW 534
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 5/140 (3%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N LI+MYVK G L A+ VF +M +R V +W+ MI + +AL M+ G++
Sbjct: 4 NILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVR 63
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
PN T+ +L AC + R + + G+ + ++D+ SR G L+ A
Sbjct: 64 PNMFTYSSVLRACDGLF----NLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALR 119
Query: 139 FIRNMPIKPNGVVWGALLGG 158
M + + VVW +++ G
Sbjct: 120 VFDEM-VTGDLVVWSSIIAG 138
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 6/150 (4%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G ++ V + LID+Y + G LE A RVF EM + WS++I G A + EAL F
Sbjct: 93 GLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLF 152
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF-FYSMTTEYGIIPQIEHYGCMVDLLS 128
+M G T +L AC + ++ GR+ + + + +I ++D+
Sbjct: 153 KRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLKYDQDLILN----NALLDMYC 208
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ G L++A M ++ + + W ++ G
Sbjct: 209 KCGSLEDANAVFVRM-VEKDVISWSTMIAG 237
>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 622
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 167/353 (47%), Positives = 240/353 (67%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R +EY +S N+ + L+DM+ +CG +E A VF + E +WS++I+GLA+HG
Sbjct: 270 RAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHG 329
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A +A+ F++MI +G P VTF +L AC H G V++G + +M ++GI P++EHY
Sbjct: 330 HAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHY 389
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GC+VD+L RAG L EA FI M +KPN + GALLG C+++KN ++AE L ++ P
Sbjct: 390 GCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKP 449
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAG-DETH 239
++GY+V+LSNIYA A +W+ + +R +M+ VKK PGWS I +DG +++F G D+ H
Sbjct: 450 EHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKH 509
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ KI + WE++L ++L GY NT D++E+EKE ++ HSEKLA+ +G+M T P
Sbjct: 510 PEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKP 569
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GT IRI+KNLRVCEDCH KLISE+ RE++VRDRNRFH F+ G CSC DYW
Sbjct: 570 GTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 96/203 (47%), Gaps = 17/203 (8%)
Query: 2 VHEYSN------------QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTW 49
VH Y+N Q GFR ++ +++ Y KCG +E AR +F EM R +FTW
Sbjct: 159 VHMYANCGFIAAAGRIFGQMGFR-DVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTW 217
Query: 50 SAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTT 109
S MI G A + ++A+ F M G+ N + ++ +C H+G ++ G R + +
Sbjct: 218 SIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVK 277
Query: 110 EYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAE 169
+ + I +VD+ R G +++A +P + + + W +++ G VH + A
Sbjct: 278 SHMTVNLILGTA-LVDMFWRCGDIEKAIHVFEGLP-ETDSLSWSSIIKGLAVHGHAHKAM 335
Query: 170 EASRQLDQLD--PLNNGYHVVLS 190
Q+ L P + + VLS
Sbjct: 336 HYFSQMISLGFIPRDVTFTAVLS 358
>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 879
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 229/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + F ++ N L+ Y KCG +E A F + ++ V +WSAMI GLA HG
Sbjct: 528 QVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAMIGGLAQHG 587
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
K AL F +M++ I PN +T +L AC H G VDE + +F SM +GI EHY
Sbjct: 588 HGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHY 647
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DLL RAG L +A E + +MP + N VWGALL RVH++ +L + A+ +L L+P
Sbjct: 648 SCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELGKLAAEKLFVLEP 707
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+G HV+L+N YA A W++VA+VRKLM++ VKK P S + + VH F+ GD++HP
Sbjct: 708 EKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVELKDRVHTFIVGDKSHP 767
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+A I+ E+L D M GY+PN V L D+++ EKE L HSE+LA+ F L++TP G
Sbjct: 768 RARDIYAKLEELGDLMSKAGYVPNLEVDLHDVDKSEKELLLSHHSERLAVAFALISTPAG 827
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLR+C DCH AFK IS+IV+REI++RD NRFH F G+CSCGDYW
Sbjct: 828 APIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFSDGACSCGDYW 879
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM-EERTVFTWSAMIQGLAIH 59
+VH + +G +I V N L+ MY G ++ ARRVF E +R +W+ M+ +
Sbjct: 121 QVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKN 180
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+ +A+ F +M+ G++PN F +++AC ++ GR+ ++M G +
Sbjct: 181 DRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRK-VHAMVVRTGYDKDVFT 239
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ S+ G + A +P K + V W A + GC +H
Sbjct: 240 ANALVDMYSKLGDIHMAALVFGKVP-KTDVVSWNAFISGCVLH 281
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 96/193 (49%), Gaps = 6/193 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + GF + V N LID Y KC CL A +VF E + +++MI L+
Sbjct: 427 QVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCD 486
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++A+ F +M+ G++P+ LL+AC + ++G++ ++ + + +
Sbjct: 487 HGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQ-VHAHLIKRKFMTDVFAG 545
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV-WGALLGGCRVHKNIDLAEEASRQLDQLD 179
+V ++ G +++A +P K GVV W A++GG H + A + R++ +D
Sbjct: 546 NALVYTYAKCGSIEDADLAFSGLPDK--GVVSWSAMIGGLAQHGHGKRALDVFRRM--VD 601
Query: 180 PLNNGYHVVLSNI 192
H+ L+++
Sbjct: 602 ERIAPNHITLTSV 614
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 2/160 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH ++G+ +++ N L+DMY K G + A VF ++ + V +W+A I G +HG
Sbjct: 223 KVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHG 282
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ AL +M G+ PN T +L AC G ++
Sbjct: 283 HDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYI 342
Query: 121 G-CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
G +VD+ ++ G L +A + +P K + ++W AL+ GC
Sbjct: 343 GVALVDMYAKYGLLDDARKVFEWIPRK-DLLLWNALISGC 381
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/299 (20%), Positives = 111/299 (37%), Gaps = 56/299 (18%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + +SG R N L+ Y KC ARRVF E + +WS+++ + +
Sbjct: 26 IHAHLLKSGLLHAFR--NHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSNNAL 83
Query: 62 AKEALTSFNKMIEIGIKPN------------------------------GVTFI--GLLH 89
+EAL +F M G++ N G F+ L+
Sbjct: 84 PREALAAFRAMRARGVRCNEFALPIVLKCAPDAGLGVQVHAVAVSTGLSGDIFVANALVA 143
Query: 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM---PIK 146
G G+VDE RR F + + + M+ + +A E M ++
Sbjct: 144 MYGGFGFVDEARRVFDEAARDRNAVS----WNGMMSAFVKNDRCSDAVELFGEMVWSGVR 199
Query: 147 PNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVR 206
PN + ++ C +++ EA R++ + + GY + A + + + +
Sbjct: 200 PNEFGFSCVVNACTGSRDL----EAGRKVHAM-VVRTGYDKDVFTANALVDMYSKLGDIH 254
Query: 207 KLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNT 265
M L K P ++ + F++G H + + LL MK G +PN
Sbjct: 255 --MAALVFGKVPKTDVVSWNA----FISGCVLHGHDQHALE----LLLQMKSSGLVPNV 303
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 20 TLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP 79
L+DMY K G L+ AR+VF + + + W+A+I G + G E+L+ F +M + G
Sbjct: 345 ALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDI 404
Query: 80 NGVTFIGLLHACGHMGWVDE 99
N T +L + + + +
Sbjct: 405 NRTTLAAVLKSTASLEAISD 424
>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
Length = 799
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 232/351 (66%), Gaps = 1/351 (0%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H Y+ GF + +CN LIDMY KCG ++ AR+VF M +R + +W+ MI IHG
Sbjct: 449 HCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIG 508
Query: 63 KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC 122
EAL F+ M G+KP+ VTFI L+ AC H G V EG+ +F +MT ++GIIP++EHY C
Sbjct: 509 LEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYAC 568
Query: 123 MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182
MVDLLSRAG +E + FI MP++P+ VWGALL CRV+KN++L E S+++ +L P +
Sbjct: 569 MVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPES 628
Query: 183 NGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGD-ETHPQ 241
G V+LSN+Y+ RW+D A+VR + G +K+PG S I + GVVH F+ G +HPQ
Sbjct: 629 TGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQ 688
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I ++LL MK GY +S V D+EE+EKE+ L HSEKLA+ FG+++ P
Sbjct: 689 LTQISNKLDELLVEMKRLGYQAESSYVFQDVEEEEKERVLLYHSEKLAIAFGILSLSPDK 748
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I + KNLRVC DCH A K IS + R+I VRD +RFH F+ G C+CGD+W
Sbjct: 749 HIIVTKNLRVCGDCHTAIKFISLVTKRDITVRDASRFHHFKDGICNCGDFW 799
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 10/165 (6%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ +SGF ++ V NTL+ MY KCG + GA R F EM+ R +++A+I G +G
Sbjct: 347 LHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGN 406
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGII----PQI 117
++E L F +M GI P T +L AC H+ + G S + Y II
Sbjct: 407 SEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYG-----SCSHCYAIICGFTADT 461
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++ G + A + M K V W ++ +H
Sbjct: 462 MICNALIDMYAKCGKIDTARKVFDRMH-KRGIVSWNTMIIAYGIH 505
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 5/179 (2%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N+ V L+D Y KCGCL+ A+ VF +M +R V W++MI G ++H + + + +
Sbjct: 153 NVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQM 212
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
+ + PN T +G+L A + + G+ + G + + ++D+ + +
Sbjct: 213 QNDVSPNSSTIVGVLPAVAQVNSLRHGKE-IHGFCVRRGFVGDVVVGTGILDVYGKCQCI 271
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNI 192
A M I N V W A++G V D EA QL L + +VLS +
Sbjct: 272 DYARRIFDMMGIVKNEVTWSAMVGAYVV---CDFMREALELFCQLLMLKDDV-IVLSAV 326
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 6/160 (3%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEER--TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
L+D+Y+ C L+ AR VF +M R V W+ +I+ A +G +EA+ + KM+ GI
Sbjct: 57 LVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGIT 116
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
PN TF +L AC + EGR + + + +VD ++ G L +A E
Sbjct: 117 PNRFTFPFVLKACSALKEASEGREIHCDI-KRLRLESNVYVSTALVDFYAKCGCLDDAKE 175
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
M K + V W +++ G +H+ +E +R L Q+
Sbjct: 176 VFDKMH-KRDVVAWNSMISGFSLHEGS--YDEVARLLVQM 212
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 88/188 (46%), Gaps = 14/188 (7%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIHG 60
+H + + GF ++ V ++D+Y KC C++ ARR+F M + TWSAM+ +
Sbjct: 242 IHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCD 301
Query: 61 QAKEALTSFNKMIEIG---IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
+EAL F +++ + I + VT ++ C ++ + G + + G + +
Sbjct: 302 FMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTG-TCLHCYAIKSGFVLDL 360
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR---- 173
++ + ++ G + A F M ++ + V + A++ G + N +EE R
Sbjct: 361 MVGNTLLSMYAKCGIINGAMRFFNEMDLR-DAVSFTAIISGYVQNGN---SEEGLRMFLE 416
Query: 174 -QLDQLDP 180
QL ++P
Sbjct: 417 MQLSGINP 424
>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Vitis vinifera]
Length = 610
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 163/343 (47%), Positives = 233/343 (67%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G+ ++ V N L+DMY KC + A+++F M +R + +W+++I G A HG A+EAL+ +
Sbjct: 268 GYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLY 327
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
N+M+ G+KPN VTF+GL++AC H+G V +GR FF SM +YGI P ++HY C++DLLSR
Sbjct: 328 NRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSR 387
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
+G L+EA I+ MP KP+ W ALL C H+N + + L L P + +++L
Sbjct: 388 SGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTLIGIRVADHLLSLKPEDPSTYILL 447
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
SNIYA A WE V++VR+LM + VKK PG+S I + F+AG+ +HP E+IF +
Sbjct: 448 SNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKESQVFLAGETSHPAKEEIFGLL 507
Query: 250 EKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNL 309
E+L MK +GYIP+TS VL D+E++EKE+ L+ HSE+LA+ +GL+ PG + I+KNL
Sbjct: 508 EELDAEMKKRGYIPDTSSVLHDLEQQEKERQLFWHSERLAVAYGLLKGIPGMVLHIVKNL 567
Query: 310 RVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
RVC DCH K IS IV REIVVRD NR+H F+ G CSC ++W
Sbjct: 568 RVCGDCHTVLKFISIIVKREIVVRDANRYHHFKDGKCSCNNFW 610
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 104/222 (46%), Gaps = 20/222 (9%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++G + + N LI+MY KCG ++ A +F ++ R +W++++
Sbjct: 24 KLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDPISWASILTANNQAN 83
Query: 61 QAKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRR----FFYSMTTEYGIIP 115
L+ F M + G++P+ F L+ AC +G + +G++ F S ++ ++
Sbjct: 84 LPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVK 143
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG-CRVHKNIDLAEEASRQ 174
+VD+ ++ G L + + + N + W A++ G + + +D + Q
Sbjct: 144 -----SSLVDMYAKCG-LPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLD-----AIQ 192
Query: 175 LDQLDPLNN--GYHVVLSNIYAEAERWEDVARVRKLMRNLGV 214
L Q P+ N + ++S + ++ W D + MR+ G+
Sbjct: 193 LFQKMPVKNLLSWTALISGL-VQSGNWVDSFYLFMEMRSKGI 233
>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 837
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 161/352 (45%), Positives = 237/352 (67%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH +SG R + V N+L+ MY KCGCL+ A +F+ M+ + V TW+A+I G A +G
Sbjct: 486 QVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNG 545
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ + +L ++ M+ G +P+ +TFIGLL AC H G VDEGR++F M YGI P EHY
Sbjct: 546 KGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHY 605
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DL R+G L EA + + M +KP+ VW +LL CRVH+N++LAE A+ L +L+P
Sbjct: 606 ACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEP 665
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+N +V+LSN+Y+ + +W DVA++RKLM++ G+ K PG S + ++ V+ F++ D HP
Sbjct: 666 MNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHP 725
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ ++++ +K GY+P+ S L D++++ KE L HSEKLA+ FGL+ PP
Sbjct: 726 REAEIYTKIDEIILRIKEAGYVPDMSFSLHDMDKEGKEVGLAYHSEKLAVAFGLLAAPPS 785
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH+A K IS + R I++RD N FH F+ G CSCGDYW
Sbjct: 786 APIRIFKNLRVCGDCHSAMKYISRVFTRHIILRDSNCFHHFREGECSCGDYW 837
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 16/164 (9%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + +SGF N+ V + L+DMY KCG L+ A+ + ME+ V +W++++ G HG
Sbjct: 286 QVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHG 345
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ--IE 118
+EAL F M +K + TF +L+ C +G ++ + +G+I + E
Sbjct: 346 LEEEALRLFKNMHGRNMKIDDYTFPSVLNCCV-VGSINP--------KSVHGLIIKTGFE 396
Query: 119 HY----GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+Y +VD+ ++ G + AY M ++ + + W +L+ G
Sbjct: 397 NYKLVSNALVDMYAKTGDMDCAYTVFEKM-LEKDVISWTSLVTG 439
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 77/157 (49%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++GF V N L+DMY K G ++ A VF +M E+ V +W++++ G A +
Sbjct: 386 VHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNS 445
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+E+L F M G+ P+ +L AC + ++ G++ G+ Y
Sbjct: 446 HEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKS-GLRWSQSVYN 504
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V + ++ G L +A +M +K + + W A++ G
Sbjct: 505 SLVAMYAKCGCLDDADAIFVSMQVK-DVITWTAIIVG 540
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 7/183 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIH 59
+H + ++GF N+ V L+DMY KC C+ A +F +E + + W+AM+ G A +
Sbjct: 184 IHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQN 243
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G +A+ F M G++ N TF +L AC + G + + + G +
Sbjct: 244 GDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQ-VHGFIVKSGFGSNVYV 302
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
+VD+ ++ G L+ A + M + V W +L+ G H L EEA R +
Sbjct: 303 QSALVDMYAKCGDLKNAKNMLETME-DDDVVSWNSLMVGFVRH---GLEEEALRLFKNMH 358
Query: 180 PLN 182
N
Sbjct: 359 GRN 361
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 2/141 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NT+I YV G L AR +F ++ TWS++I G G EA F M G K
Sbjct: 100 NTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWK 159
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
+ T +L C +G + G + + G + +VD+ ++ + EA
Sbjct: 160 ASQFTLGSVLRVCSSLGLIQTG-EMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEF 218
Query: 139 FIRNMPI-KPNGVVWGALLGG 158
+ + + N V+W A++ G
Sbjct: 219 LFKGLEFDRKNHVLWTAMVTG 239
>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g24000, mitochondrial; Flags: Precursor
gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
Length = 633
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 168/351 (47%), Positives = 233/351 (66%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y +SG + NTL+DMY K G + AR++F + +R V +W++++ A HG
Sbjct: 284 VHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGF 343
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA+ F +M +GI+PN ++F+ +L AC H G +DEG + Y + + GI+P+ HY
Sbjct: 344 GKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHY-YELMKKDGIVPEAWHYV 402
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+VDLL RAG L A FI MPI+P +W ALL CR+HKN +L A+ + +LDP
Sbjct: 403 TVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPD 462
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G HV+L NIYA RW D ARVRK M+ GVKK P S + ++ +H FVA DE HPQ
Sbjct: 463 DPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQ 522
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E+I + WE++L +K GY+P+TS V++ ++++E+E L HSEK+AL F L+NTPPG+
Sbjct: 523 REEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGS 582
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I I KN+RVC DCH A KL S++V REI+VRD NRFH F+ G+CSC DYW
Sbjct: 583 TIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + QS FR +I + NTL++MY KCG LE AR+VF +M +R TW+ +I G + H +
Sbjct: 82 VHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDR 141
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHA--------CGHMGWVDEGRRFFYSMTTEYGI 113
+AL FN+M+ G PN T ++ A CGH + + G
Sbjct: 142 PCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQ---------LHGFCVKCGF 192
Query: 114 IPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ ++DL +R G + +A + + + N V W AL+ G
Sbjct: 193 DSNVHVGSALLDLYTRYGLMDDA-QLVFDALESRNDVSWNALIAG 236
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 84/162 (51%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + GF N+ V + L+D+Y + G ++ A+ VF +E R +W+A+I G A
Sbjct: 182 QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRS 241
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++AL F M+ G +P+ ++ L AC G++++G ++ ++ + G
Sbjct: 242 GTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQG-KWVHAYMIKSGEKLVAFAG 300
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ +++G + +A + + K + V W +LL H
Sbjct: 301 NTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNSLLTAYAQH 341
>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like, partial [Vitis vinifera]
Length = 599
Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 170/352 (48%), Positives = 235/352 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH+ +S NI +L+ MY KCG LE A ++F+ M ++ V TW+AMI G A HG
Sbjct: 248 QVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHG 307
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++AL F+KM + G+KP+ +TF+ +L AC H G+VD G +F SM +YG+ + +HY
Sbjct: 308 AGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHY 367
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL R G L EA + I+ MP KP+ ++G LLG CR+HKN++LAE A++ L LDP
Sbjct: 368 TCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLDP 427
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +V L+N+YA RW+ VA VR+ M++ V KTPG+S I V VVHEF +GD HP
Sbjct: 428 ESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSGDRIHP 487
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ I + +L M+L GY+P+ L D+ E++K++ L RHSEKLA+ +GL+ P G
Sbjct: 488 ELAFIHEKLNELERKMRLAGYVPDLEYALHDVGEEQKKQILLRHSEKLAIAYGLIRMPLG 547
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPIR+ KNLRVC DCH+A K IS I R I+VRD RFH F+ G CSCGDYW
Sbjct: 548 TPIRVFKNLRVCGDCHSATKYISAIEGRVIIVRDTTRFHHFRQGECSCGDYW 599
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 76/150 (50%), Gaps = 2/150 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ +I ++K G +E A + F EM + + TW+AMI G + QA+ L F +M
Sbjct: 159 RSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRM 218
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+E G +PN + +L C ++ + G++ + + + + I ++ + + G
Sbjct: 219 VESGFRPNPSSLSSVLLGCSNLSALKLGKQ-VHQLICKSPVSWNITAGTSLLSMYCKCGD 277
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
L++A++ MP K + V W A++ G H
Sbjct: 278 LEDAWKLFLVMPQK-DVVTWNAMISGYAQH 306
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 116/254 (45%), Gaps = 30/254 (11%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLA-IHGQAKEALTSFNKM 72
N+ N +I +++ G L A RVF M +T TW++M+ G + G+ K A F+++
Sbjct: 4 NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRI 63
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E P+ ++ +L H V+ R FF M + + M+ S+ G
Sbjct: 64 PE----PDIFSYNIMLACYLHNADVESARLFFDQMP-----VKDTASWNTMISGFSQNGM 114
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNI 192
+ +A E MP++ N V W A++ G ++DLA +QL ++ P+ + V + +
Sbjct: 115 MDQARELFLVMPVR-NSVSWNAMISGYVESGDLDLA----KQLFEVAPVRSV--VAWTAM 167
Query: 193 YAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKL 252
++ + K + +K W+++ +AG + QAE ++++++
Sbjct: 168 ITGFMKFGKIELAEKYFEEMPMKNLVTWNAM---------IAGYIENCQAENGLKLFKRM 218
Query: 253 LDGMKLKGYIPNTS 266
++ G+ PN S
Sbjct: 219 VES----GFRPNPS 228
>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 171/327 (52%), Positives = 230/327 (70%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N L DMY KCGC+ ARRVF +MEER V +WS +I GLA++G A EA F +M++ G K
Sbjct: 235 NALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEK 294
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
PN V F+GLL AC H G V +G F +M EYG+ P++EHYGC+VDLLSRAG L +A +
Sbjct: 295 PNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAED 354
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAER 198
I +MP+KPN ++WGALLGGCR++++ + + + +LD ++G +V L+N+Y+ R
Sbjct: 355 MISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILELDSDHSGSYVYLANVYSSMGR 414
Query: 199 WEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKL 258
+D A+ R MR GV KTPG S I VD VHEF GD +HP++ KI+ M +L+ MKL
Sbjct: 415 LDDAAKCRLRMRENGVLKTPGCSWIEVDNTVHEFFMGDLSHPESNKIYSMIRELMWKMKL 474
Query: 259 KGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAA 318
GY P T +V+ I+E+EKE L HSEKLA+ FGL++T GT IR++KNLR+C DCH A
Sbjct: 475 AGYKPKTDLVVHSIDEEEKEDALSIHSEKLAIAFGLISTSEGTTIRVVKNLRICNDCHDA 534
Query: 319 FKLISEIVNREIVVRDRNRFHCFQAGS 345
K+IS IV REI+VRDR+RFH F+ G+
Sbjct: 535 AKIISGIVKREIIVRDRSRFHHFKDGA 561
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 11/174 (6%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM--EERTVFTWSAMIQGLAI 58
++H + GF N+ V N+LIDMY K G L AR +F EM +R V W+AMI G A
Sbjct: 113 KIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQ 172
Query: 59 HGQAKEALTSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGR---RFFYSMTTEYGII 114
+ + +A+ F M + G+ PN VT + +L AC H+G +D G+ F G+
Sbjct: 173 NEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALGLF 232
Query: 115 PQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
+ D+ ++ G + EA M + + + W ++ G ++ + D A
Sbjct: 233 LG----NALADMYAKCGCITEARRVFNKME-ERDVISWSIIICGLAMYGHADEA 281
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 4/148 (2%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNG--VTFIGLLHAC 91
A +F + +F +A ++ LA + A+ FN + PN TF +L AC
Sbjct: 43 AALIFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKAC 102
Query: 92 GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV 151
+ V G++ ++M T+ G + ++D+ +AG+L A M ++ VV
Sbjct: 103 AGLAHVVNGQK-IHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVV 161
Query: 152 -WGALLGGCRVHKNIDLAEEASRQLDQL 178
W A++ G ++ A E R + Q
Sbjct: 162 CWNAMIAGYAQNEKYSDAIEVFRMMQQF 189
>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 823
Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 164/352 (46%), Positives = 232/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++G ++ V +L DMY KCG LE A +F ++ W+ +I HG
Sbjct: 472 KLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHG 531
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++A+ F +M++ G+KP+ +TF+ LL AC H G VDEG+ F M T+YGI P ++HY
Sbjct: 532 HGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHY 591
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVD+ RAG L+ A +FI++M ++P+ +WGALL CRVH N+DL + AS L +++P
Sbjct: 592 GCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEP 651
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ GYHV+LSN+YA A +WE V +R + G++KTPGWSS+ VD V F G++THP
Sbjct: 652 EHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHP 711
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
E++++ L +K+ GY+P+ VL D+E+ EKE L HSE+LA+ F L+ TP
Sbjct: 712 MYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAK 771
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IRI KNLRVC DCH+ K IS+I REI+VRD NRFH F+ G CSCGDYW
Sbjct: 772 TTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 3/148 (2%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
F +I + N ++ MY K G ++ AR VF + V +W+ +I G A +G A EA+ +N
Sbjct: 380 FLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYN 439
Query: 71 KMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
M E G I N T++ +L AC G + +G + + + G+ + + D+ +
Sbjct: 440 IMEEEGEIAANQGTWVSVLPACSQAGALRQGMK-LHGRLLKNGLYLDVFVVTSLADMYGK 498
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLG 157
G L++A +P + N V W L+
Sbjct: 499 CGRLEDALSLFYQIP-RVNSVPWNTLIA 525
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 128/292 (43%), Gaps = 30/292 (10%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + GF ++ V +LI +Y + + AR +F EM R + +W+AMI G G
Sbjct: 171 KIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSG 230
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
AKEALT N + + + VT + LL AC G + G +S + ++G+ ++
Sbjct: 231 NAKEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVT-IHSYSIKHGLESELFVS 285
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASRQLD 176
++DL + G L++ + M ++ + + W +++ ++ + I L +E
Sbjct: 286 NKLIDLYAEFGRLRDCQKVFDRMYVR-DLISWNSIIKAYELNEQPLRAISLFQEMRLSRI 344
Query: 177 QLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGW--SSITVDGVVHEFVA 234
Q D L + L++I ++ + +R G GW IT+ V A
Sbjct: 345 QPDCLT---LISLASILSQ------LGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYA 395
Query: 235 GDETHPQAEKIFQ--------MWEKLLDGMKLKGYIPNTSVVLLDIEEKEKE 278
A +F W ++ G G+ + ++ + +I E+E E
Sbjct: 396 KLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGF-ASEAIEMYNIMEEEGE 446
>gi|218202317|gb|EEC84744.1| hypothetical protein OsI_31741 [Oryza sativa Indica Group]
Length = 563
Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 171/339 (50%), Positives = 234/339 (69%), Gaps = 2/339 (0%)
Query: 16 RVCNTLIDMYVKCGCLEGARRVFIEM-EERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
R+ + LI+MY KC C+EGA VF + + V TW+AM+ G +G +++AL F +M
Sbjct: 225 RLSSALINMYSKCACIEGAVHVFENLGAQMNVDTWNAMLAGFTANGCSEKALELFARMEI 284
Query: 75 IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ 134
G+ PN +TF +L+AC H G+V+EG F MT YGI P I HYGCMVDL RAG
Sbjct: 285 TGLVPNKITFNTVLNACSHGGFVEEGMGCFERMTKVYGIEPDIAHYGCMVDLFCRAGLFD 344
Query: 135 EAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYA 194
+A + I+ MP+KP+ VW AL+G C+ H+N +L +A L + P ++ +V+LSNIYA
Sbjct: 345 KAEKMIQMMPMKPDAAVWKALVGACKTHRNFELGRKAGHMLIEAAPNDHAGYVLLSNIYA 404
Query: 195 EAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLD 254
W V +VRKLM + GV+K PG SSI +DGV+HEF++GD++H E I++M ++
Sbjct: 405 LDGNWTGVHKVRKLMLDRGVQKVPGSSSIEIDGVIHEFISGDKSHSSKEDIYEMLSEMCQ 464
Query: 255 GMKLKGYIPNTSVVLLDIEEKE-KEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCE 313
+K+ GY+P+TS VLLDI++++ KE L HSEKLA+ FGL++T PGTPIRI KNLRVC
Sbjct: 465 QLKVAGYVPDTSHVLLDIDDEDVKESSLALHSEKLAIAFGLISTAPGTPIRIAKNLRVCG 524
Query: 314 DCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
DCH A KL+S+I R I+VRD NRFH F+ GSCSCGD+W
Sbjct: 525 DCHNAVKLLSKIYGRCIIVRDANRFHHFREGSCSCGDFW 563
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 19/172 (11%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ + G + RVCN LI Y CG L AR+VF E W+++++G A G
Sbjct: 99 QLHSHAAKRGAASHRRVCNGLIHAYAVCGSLLDARKVFDRGHEGDAVAWNSLLRGYAAAG 158
Query: 61 QAKEALTSFNKMIEIGIKP-NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP---- 115
AL F +G++ + V++ ++ C G +E F M +P
Sbjct: 159 DVN-ALREFF----VGMQARDTVSWNTIIAWCVENGEYEEAIAVFREMLASMECLPDRVT 213
Query: 116 -------QIEH--YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++E ++++ S+ ++ A N+ + N W A+L G
Sbjct: 214 LFPGKGIEVEERLSSALINMYSKCACIEGAVHVFENLGAQMNVDTWNAMLAG 265
>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 786
Score = 354 bits (908), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 171/353 (48%), Positives = 235/353 (66%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIH 59
++H + +SG ++ V N LI MY K G + A R F + ER +W++MI LA H
Sbjct: 434 QIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQH 493
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G A+EAL F M+ G++P+ +T++G+ AC H G V++GR++F M IIP + H
Sbjct: 494 GHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSH 553
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CMVDL RAG LQEA EFI MPI+P+ V WG+LL CRVHKNIDL + A+ +L L+
Sbjct: 554 YACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLE 613
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N+G + L+N+Y+ +WE+ A++RK M++ VKK G+S I V VH F D TH
Sbjct: 614 PENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTH 673
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ +I+ +K+ D +K GY+P+T+ VL D+EE+ KE+ L HSEKLA+ FGL++TP
Sbjct: 674 PEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPD 733
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T +RIMKNLRVC DCH A K IS++V REI+VRD RFH F+ G CSC DYW
Sbjct: 734 KTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 4/153 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
L+D Y+K G + A+ +F+ +++R V W+AMI G HG EA+ F M+ G +
Sbjct: 351 TALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQR 410
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
PN T +L + + G++ S + G I + ++ + ++AG + A
Sbjct: 411 PNSYTLAAMLSVASSLASLSHGKQIHGS-AVKSGEIYSVSVSNALITMYAKAGNITSASR 469
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
+ + + V W +++ H + AEEA
Sbjct: 470 AFDLIRCERDTVSWTSMIIALAQHGH---AEEA 499
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 79/191 (41%), Gaps = 34/191 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFI--------------------- 39
+VH + + G R N+ V N+L++MY KCG A+ VF
Sbjct: 167 KVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVG 226
Query: 40 ----------EMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG-IKPNGVTFIGLL 88
+M ER + TW++MI G G AL F+KM+ + P+ T +L
Sbjct: 227 QMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVL 286
Query: 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPN 148
AC ++ + G++ + T I I ++ + SR G ++ A I K
Sbjct: 287 SACANLEKLCIGKQIHSHIVTTGFDISGIV-LNALISMYSRCGGVETARRLIEQRGTKDL 345
Query: 149 GVV-WGALLGG 158
+ + ALL G
Sbjct: 346 KIEGFTALLDG 356
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 74/160 (46%), Gaps = 5/160 (3%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NT++ Y K G ++ F ++ +R +W+ MI G GQ +A+ M++ GI+
Sbjct: 84 NTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIE 143
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P T +L + ++ G++ +S + G+ + ++++ ++ G A +
Sbjct: 144 PTQFTLTNVLASVAATRCMETGKK-VHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMA-K 201
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
F+ + + + W A++ +H + + A Q +Q+
Sbjct: 202 FVFDRMVVRDISSWNAMIA---LHMQVGQMDLAMAQFEQM 238
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 354 bits (908), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 169/352 (48%), Positives = 234/352 (66%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + + N + +LIDMY K G +E A VF + + VF WSAMI GLA+HG+
Sbjct: 499 IHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGR 558
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ A+ F M E +KPN VTF LL AC H G VDEG+R F M YG++P+ +HY
Sbjct: 559 GEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYS 618
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+L RAG L+EA +FI MP+ P+ VWGALLG C +H N++LAE+A +L +++P
Sbjct: 619 CMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPG 678
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +V+LSN+YA+ WE V+ +R+ MR+ G+KK G SSI +DG VHEF+ GD HP
Sbjct: 679 NHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTVHEFIVGDNAHPL 738
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKE-KEKFLYRHSEKLALTFGLMNTPPG 300
+ I+ ++++ ++ GY+ NT +L +EE+E KEK L HSEK+A+ FGL+
Sbjct: 739 SRDIYAKLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKALKLHSEKMAIAFGLIRADSQ 798
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC DCH K++S++ R+IV+RDR RFH F G CSC DYW
Sbjct: 799 QAIRIVKNLRVCRDCHTVAKMVSKVYGRDIVLRDRYRFHHFSGGHCSCQDYW 850
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 35/195 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAI-- 58
+V +Y +++ N+ VCN IDM+VKCG +E AR +F ME+R V +W+ +I G A
Sbjct: 364 KVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMS 423
Query: 59 -----------------------------HGQAKEALTSFN--KMIEIGIKPNGVTFIGL 87
G+ KEAL F ++ + G +P+ VT +
Sbjct: 424 EHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLST 483
Query: 88 LHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKP 147
L AC +G +D G + + + I ++D+ S++G +++A E ++ K
Sbjct: 484 LSACAQLGAMDIG-EWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNK- 541
Query: 148 NGVVWGALLGGCRVH 162
+ VW A++ G +H
Sbjct: 542 DVFVWSAMIAGLAMH 556
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 4/159 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIH 59
VH + ++ F ++ V N+LI Y CG L+ A VF IE + + +W++M+ G
Sbjct: 262 VHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQG 321
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G +AL F +M G+ PN VT + ++ AC + GR+ ++ +
Sbjct: 322 GYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRK-VCDYIDRNEMMMNLNV 380
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+D+ + G ++ A NM K + V W ++ G
Sbjct: 381 CNATIDMFVKCGEVEIARGLFDNME-KRDVVSWTTIIDG 418
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 108/271 (39%), Gaps = 42/271 (15%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI-EIGIKPNGVTFIGL 87
L+ AR+VF ++ + +++W+ +I+ LA +++ F +M+ + PN TF L
Sbjct: 187 SALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVL 246
Query: 88 LHA-----CGHMGWVDEGRRFFYSMTTEYGIIPQIEHY------------------GCMV 124
+ A C +G G S + ++ + H+ G
Sbjct: 247 IKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNK 306
Query: 125 DLLS----RAGFLQEAY--------EFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEAS 172
D++S GF+Q Y E +RN + PN V +++ C N+ L +
Sbjct: 307 DIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVC 366
Query: 173 RQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDG---VV 229
+D+ + + N +V + I + E V R L N+ + W++I +DG +
Sbjct: 367 DYIDRNEMMMN-LNVCNATIDMFVKCGE-VEIARGLFDNMEKRDVVSWTTI-IDGYAKMS 423
Query: 230 HEFVAGDETHPQAEKIFQMWEKLLDGMKLKG 260
+A D K W L+ G + G
Sbjct: 424 EHGIARDIFDSMPRKDIPAWNVLISGYEQSG 454
>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 640
Score = 354 bits (908), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 171/353 (48%), Positives = 237/353 (67%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIHG 60
+H + ++GF V N LID Y KCG + AR VF M R++ +W+++I GLA+HG
Sbjct: 288 LHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHG 347
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ F++M E G++P+G+TFI LL+AC H G V+EG F M YGI P IEHY
Sbjct: 348 CGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHY 407
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDL RA LQ+AYEFI MP+ PN ++W LLG C +H NI++AE +L ++DP
Sbjct: 408 GCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGACSIHGNIEMAELVKARLAEMDP 467
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G HV+LSN+YA A +W+DV+ +R+ M +KKTPGWS I +D V++ FVAG++ +
Sbjct: 468 DNSGDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKKTPGWSMIEIDKVIYGFVAGEKPNE 527
Query: 241 QAEKIFQMWEKLLDGMKLK-GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
E+ + +++ ++ + GY P VL DIEE+EKE + +HSEKLA FG+ P
Sbjct: 528 VTEEAHEKLREIMLRLRTEAGYAPQLRSVLHDIEEEEKEDSVSKHSEKLAAAFGIAKLPK 587
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G +RI+KNLRVC DCH KLIS++ EI+VRDR+RFH F+ G CSC DYW
Sbjct: 588 GRILRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKDGFCSCRDYW 640
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 1/150 (0%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ N ++ Y K G L ARRVF EM R +WS MI G A +G EA F ++
Sbjct: 198 RNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFREL 257
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ I+ N V+ G+L AC G + G + + + G + ++D S+ G
Sbjct: 258 LREEIRTNEVSLTGVLSACAQAGAFEFG-KILHGFVEKAGFLYVGSVNNALIDTYSKCGN 316
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ A +NMP+ + V W +++ G +H
Sbjct: 317 VAMARLVFQNMPVARSIVSWTSIIAGLAMH 346
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 108/258 (41%), Gaps = 28/258 (10%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + GF +I V TLI MY +CG ARRVF EM E V TW+A++ G
Sbjct: 124 QLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCG 183
Query: 61 QAKEALTSFNKMIEIGIKP--NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+ A F G P N ++ G+L G + RR FY M +
Sbjct: 184 DVEGAQDVF------GCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEV----- 232
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNM---PIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
+ M+ + G EA+ F R + I+ N V +L C + + +
Sbjct: 233 SWSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFV 292
Query: 176 DQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKT-PGWSSITVDGVVHEFVA 234
++ L G V + + + +VA R + +N+ V ++ W+SI +A
Sbjct: 293 EKAGFLYVGS--VNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSI---------IA 341
Query: 235 GDETHPQAEKIFQMWEKL 252
G H E+ Q++ ++
Sbjct: 342 GLAMHGCGEEAIQLFHEM 359
>gi|357464871|ref|XP_003602717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491765|gb|AES72968.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 554
Score = 354 bits (908), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 170/351 (48%), Positives = 234/351 (66%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + G + + LI+MY +CG ++ + +VF EM ER V TW+A+I GLA+HG+
Sbjct: 204 VHSFIVRMGIVMTVPLGTALINMYSRCGLIDRSVKVFDEMPERNVVTWTALINGLAVHGR 263
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++EAL F +M E G+KP+G FIG+L AC H G V++G R F SM E+GI P +EHYG
Sbjct: 264 SREALKVFYEMKESGLKPDGALFIGVLVACSHGGLVEDGWRVFESMRDEFGIKPMLEHYG 323
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG + EA++F+ MP+KPN V+W LLG C H ++ LAE+A ++ +LDP
Sbjct: 324 CMVDLLGRAGLILEAFDFVEEMPLKPNSVIWRTLLGACVNHNHLGLAEKARERIIELDPY 383
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +V+LSN Y W A +R M+ + K PG S + +D VVHEFV+GD HPQ
Sbjct: 384 HDGDYVLLSNAYGRVGNWGGKAGLRNSMKQNRIVKEPGLSFVHIDQVVHEFVSGDHVHPQ 443
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E+I + ++D +KL GY PNTS VL DI+++EKE L HSEKLA+ F L+
Sbjct: 444 WEEITKFLASIIDTVKLGGYTPNTSSVLHDIQDEEKEHCLGYHSEKLAVAFVLLYHRDRR 503
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR++KNLR+C DCH K S I +R+I++RDRNRFH F G CSC D+W
Sbjct: 504 TIRVIKNLRICYDCHDFMKHASGIFDRDIIIRDRNRFHHFSKGLCSCQDFW 554
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 8/158 (5%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF NI V N LI+ Y G L+ A ++F EM R + +WS +I L + EAL+ F
Sbjct: 107 GFDTNIFVQNALINAYGSRGSLDVAVKLFDEMRRRDIVSWSTLISCLVKNNLPAEALSVF 166
Query: 70 NKMIEIGIKP-----NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMV 124
+M ++G + + + ++ A +G ++ G + +S GI+ + ++
Sbjct: 167 QQM-QMGHRDIRNWLDRAIMLSVISAVSSLGVIELG-IWVHSFIVRMGIVMTVPLGTALI 224
Query: 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++ SR G + + + MP + N V W AL+ G VH
Sbjct: 225 NMYSRCGLIDRSVKVFDEMPER-NVVTWTALINGLAVH 261
>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Glycine max]
Length = 1116
Score = 354 bits (908), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 165/351 (47%), Positives = 241/351 (68%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM-EERTVFTWSAMIQGLAIHG 60
VH Y +++G + ++ + +LIDMY KCG +E A+ +F + E+ V WSAMI ++HG
Sbjct: 217 VHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHG 276
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++E L F +M+ G++PN VTF+ +L AC H G V EG +F M EYG+ P I+HY
Sbjct: 277 LSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHY 336
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDL SRAG +++A+ +++MP++P+ ++WGALL G R+H +++ E A +L +LDP
Sbjct: 337 GCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAITKLLELDP 396
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+ +V+LSN+YA+ RW +V +R LM G+KK PG S + VDGV+ EF AGD +HP
Sbjct: 397 ANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLPGCSLVEVDGVIREFFAGDNSHP 456
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ ++ M ++++ ++ GY NT VLLD++E+ KE L HSEKLA+ + + T PG
Sbjct: 457 ELLNLYVMLDEIMKRLEKHGYERNTGEVLLDLDEEGKEFALSLHSEKLAIAYCFLRTSPG 516
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDY 351
T IRI+KNLR+C DCH A K+IS+ NREI+VRD NRFH F+ G CSC DY
Sbjct: 517 TTIRIVKNLRICSDCHVAIKIISKEFNREIIVRDCNRFHHFKNGLCSCKDY 567
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 73/147 (49%), Gaps = 4/147 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEI--- 75
N +I K G + AR++F +M E+ V +WS MI G G+ K AL+ F + +
Sbjct: 130 NAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGS 189
Query: 76 GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE 135
++PN T +L AC +G + G ++ ++ + G+ + ++D+ ++ G ++
Sbjct: 190 QLRPNEFTMSSVLSACARLGALQHG-KWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIER 248
Query: 136 AYEFIRNMPIKPNGVVWGALLGGCRVH 162
A N+ + + + W A++ +H
Sbjct: 249 AKCIFDNLGPEKDVMAWSAMITAFSMH 275
>gi|195609728|gb|ACG26694.1| pentatricopeptide repeat protein PPR986-12 [Zea mays]
Length = 551
Score = 354 bits (908), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 166/351 (47%), Positives = 247/351 (70%), Gaps = 6/351 (1%)
Query: 7 NQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEAL 66
+ S R++ + N+L+D+Y KCG +E AR+VF M ER + +W+AM+ LA HG+ +++L
Sbjct: 202 HASPVSRDVLINNSLVDLYGKCGAVELARQVFDRMSERDLASWNAMVLALANHGRVQDSL 261
Query: 67 TSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125
F++M + G+ PN +TF+ +L AC H G VDEGRR+F +M +++GI P+IEHYGCMVD
Sbjct: 262 DLFDRMTRVEGLVPNAITFVAVLSACNHGGLVDEGRRYFAAMVSDHGIRPRIEHYGCMVD 321
Query: 126 LLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC-RVHKNIDLAEEASR-QLDQLDPLNN 183
+L+RAGF++EA + + M +P+ ++W +LL C + + ++L+E ++ LD D +
Sbjct: 322 ILARAGFIEEALDVVAGMNCRPDSIIWRSLLDACCKRNAGLELSEAMAKLALDVPDDAVS 381
Query: 184 GYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAE 243
G +V+LS +YA A+RW DV +R+LM G KK PG+SSI +DG VH+FVAGD +HPQ+E
Sbjct: 382 GVYVLLSRVYASAQRWNDVGMIRQLMSQEGFKKEPGFSSIEMDGSVHQFVAGDTSHPQSE 441
Query: 244 KIFQMWEKLLDGMKLKGYIPNTS--VVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I+ +++ + GY P+ S ++ DI+ + K L HSE+LA++FGL+N PG
Sbjct: 442 EIYVKLDEIQQRLTSAGYKPDLSEAPMVADID-RTKGATLRLHSERLAISFGLLNATPGA 500
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVC+DCH KLIS++ N EI+VRDR RFH F+ GSCSC DYW
Sbjct: 501 PIRILKNLRVCKDCHTISKLISKLYNVEIIVRDRIRFHHFKDGSCSCKDYW 551
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 14/170 (8%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI--E 74
V N+L+ Y CG A VF + +R++ +W+ + LA +G AL F +M
Sbjct: 101 VANSLVHFYASCGRPGAALAVFRRVPDRSLVSWNTAVDALAGNGDHLAALDLFREMQRDR 160
Query: 75 IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYG-------IIPQIEHYGCMVDLL 127
+ P+ T +L AC G + G + E G + + +VDL
Sbjct: 161 PDLAPDAYTVQSVLGACAATGALSLGLYAHALLLRELGGAGHASPVSRDVLINNSLVDLY 220
Query: 128 SRAGFLQEAYEFIRNMPIKP----NGVVWGALLGGCRVHKNIDLAEEASR 173
+ G ++ A + M + N +V AL RV ++DL + +R
Sbjct: 221 GKCGAVELARQVFDRMSERDLASWNAMVL-ALANHGRVQDSLDLFDRMTR 269
>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g46790, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 353 bits (907), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 171/351 (48%), Positives = 237/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + G + V + L+ MY +CG LE +RVF M +R V +W+++I +HG
Sbjct: 307 IHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGY 366
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K+A+ F +M+ G P VTF+ +L AC H G V+EG+R F +M ++GI PQIEHY
Sbjct: 367 GKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYA 426
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RA L EA + +++M +P VWG+LLG CR+H N++LAE ASR+L L+P
Sbjct: 427 CMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPK 486
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V+L++IYAEA+ W++V RV+KL+ + G++K PG + V ++ FV+ DE +P
Sbjct: 487 NAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPL 546
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E+I KL + MK KGYIP T VL ++E +EKE+ + HSEKLAL FGL+NT G
Sbjct: 547 MEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGE 606
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLR+CEDCH K IS+ + +EI+VRD NRFH F+ G CSCGDYW
Sbjct: 607 PIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 8/175 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G+ ++ + TL+DMY + GC++ A VF M R V +WSAMI A +G+
Sbjct: 204 IHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGK 263
Query: 62 AKEALTSFNKMIE--IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
A EAL +F +M+ PN VT + +L AC + +++G + + G+ +
Sbjct: 264 AFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQG-KLIHGYILRRGLDSILPV 322
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEE 170
+V + R G L+ M + + V W +L+ VH K I + EE
Sbjct: 323 ISALVTMYGRCGKLEVGQRVFDRMHDR-DVVSWNSLISSYGVHGYGKKAIQIFEE 376
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 81/161 (50%), Gaps = 6/161 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH + +G ++ + LI MY G ++ AR+VF + +RT++ W+A+ + L + G
Sbjct: 98 RVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAG 157
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHAC----GHMGWVDEGRRFFYSMTTEYGIIPQ 116
+E L + KM IG++ + T+ +L AC + + +G+ ++ T G
Sbjct: 158 HGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKE-IHAHLTRRGYSSH 216
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
+ +VD+ +R G + A MP++ N V W A++
Sbjct: 217 VYIMTTLVDMYARFGCVDYASYVFGGMPVR-NVVSWSAMIA 256
>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Glycine max]
Length = 611
Score = 353 bits (907), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 163/343 (47%), Positives = 228/343 (66%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G+ + + N LIDMY KC L A+ +F EM + V +W+++I G A HGQA+EAL +
Sbjct: 269 GYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALY 328
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
++M+ G+KPN VTF+GL+HAC H G V +GR F +M ++GI P ++HY C++DL SR
Sbjct: 329 DEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSR 388
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
+G L EA IR MP+ P+ W ALL C+ H N +A + L L P + +++L
Sbjct: 389 SGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKPEDPSSYILL 448
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
SNIYA A WEDV++VRKLM L KK PG+S I + H F AG+ +HP ++I +
Sbjct: 449 SNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCIDLGKGSHVFYAGETSHPMRDEIIGLM 508
Query: 250 EKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNL 309
+L + M+ +GY P+TS VL D++++EKE+ L+ HSE+LA+ +GL+ PGT IRI+KNL
Sbjct: 509 RELDEEMRKRGYAPDTSSVLHDMDQQEKERQLFWHSERLAVAYGLLKAVPGTVIRIVKNL 568
Query: 310 RVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
RVC DCH KLIS I NREI VRD R+H F+ G+CSC D+W
Sbjct: 569 RVCGDCHTVLKLISAITNREIYVRDAKRYHHFKDGNCSCNDFW 611
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 82/190 (43%), Gaps = 33/190 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++G ++ + NTL++ Y KCG ++ A ++F + R W++++ +
Sbjct: 24 KLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNLSN 83
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMG--WVDEGR----RFFYSMTTEYGII 114
+ AL+ ++ G P+ F L+ AC ++G V +G+ RFF S ++ ++
Sbjct: 84 RPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVV 143
Query: 115 PQ----------IEHYG----------------CMVDLLSRAGFLQEAYEFIRNMPIKPN 148
+ YG M+ +R+G EA+ R P + N
Sbjct: 144 KSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYR-N 202
Query: 149 GVVWGALLGG 158
W AL+ G
Sbjct: 203 LFAWTALISG 212
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
T+I Y + G A R+F + R +F W+A+I GL G +A F +M GI
Sbjct: 176 TTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGIS 235
Query: 79 -PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC------MVDLLSRAG 131
+ + ++ AC ++ + G++ +G++ + + C ++D+ ++
Sbjct: 236 VTDPLVLSSVVGACANLALWELGKQM-------HGVVITLGYESCLFISNALIDMYAKCS 288
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
L A ++I + + V W +++ G H AEEA D++
Sbjct: 289 DLVAA-KYIFCEMCRKDVVSWTSIIVGTAQHGQ---AEEALALYDEM 331
>gi|357141422|ref|XP_003572219.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Brachypodium distachyon]
Length = 571
Score = 353 bits (906), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 166/351 (47%), Positives = 236/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H Y ++ + L++MY++CG +E A VF EM ++ V TWS MI GLA++G
Sbjct: 221 AHAYHARTCRNTTRNLGTALLNMYMRCGDVESAWSVFHEMLDKDVRTWSVMIAGLAVNGL 280
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL F +M IG+ P+ +T +L AC H G VDEG+ F + M EY + P IEHYG
Sbjct: 281 PRDALKLFAEMKNIGVDPDSITMTAVLSACSHAGMVDEGKMFLHCMPIEYHLQPTIEHYG 340
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL RAG L+EA I +P K + +WGALL CR HKN+D+ + A+ ++ +LDP
Sbjct: 341 CVVDLLGRAGQLEEALALIETVPFKADVALWGALLVACRAHKNVDMGQMAAMEILKLDPH 400
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G V LSN YA A +W+ V VR M+ + K PG S + +DGVV+EF++GD +HPQ
Sbjct: 401 HAGACVFLSNAYAAAGKWDLVQEVRSSMKEHRIYKPPGSSIVELDGVVYEFLSGDHSHPQ 460
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I+ M +++ + LKG+ P+T V DI+E++KE + +HSEKLAL GL++T G
Sbjct: 461 SDRIYAMLDEVCKTLSLKGHRPSTKEVAFDIDEEDKEVCISQHSEKLALALGLISTRRGA 520
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLR+CEDCH+ K++SE+ +R IVVRDRNRFH F+ GSCSC DYW
Sbjct: 521 VIRIVKNLRICEDCHSVMKIVSEVYDRVIVVRDRNRFHHFKNGSCSCLDYW 571
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 68/169 (40%), Gaps = 27/169 (15%)
Query: 7 NQSGFRRNIR-----VCNTLIDMYVKCGCLEGARRVFIEM--EERTVFTWSAMIQGLAIH 59
+ S FRR + + +++ Y G L AR VF +R + W++++
Sbjct: 122 HASLFRRGLESRDRFISASMLSFYAAAGDLPAAREVFDRSPPNQRDLALWNSLLHAYLSQ 181
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR-------RFFYSMTTEYG 112
G L F +M+ + VT + ++ AC H+G +D GR R + T G
Sbjct: 182 GLYTHVLRLFRQMVAT----DEVTLLAVVSACSHLGALDTGRWAHAYHARTCRNTTRNLG 237
Query: 113 IIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRV 161
++++ R G ++ A+ M + + W ++ G V
Sbjct: 238 T--------ALLNMYMRCGDVESAWSVFHEM-LDKDVRTWSVMIAGLAV 277
>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 637
Score = 353 bits (906), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 231/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SGF N+ V ++ +DMY KCG L + +F E++E+ + W+ +I G A H
Sbjct: 286 QMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHA 345
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ KE + F KM + G+ PN VTF LL CGH G V+EGRRFF M T YG+ P + HY
Sbjct: 346 RPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHY 405
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVD+L RAG L EAYE I+++P +P +WG+LL CRV KN++LAE A+++L +L+P
Sbjct: 406 SCMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELEP 465
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G HV+LSNIYA ++WE++A+ RKL+R+ VKK G S I + VH F G+ +HP
Sbjct: 466 ENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGQSWIDIKDKVHIFRVGESSHP 525
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I M + L+ ++ GY P+ L D+E +KE+ L +HSEKLAL FGLM P G
Sbjct: 526 RIREICTMLDNLVIELRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPEG 585
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ +RIMKNLR+C DCH K S R I+VRD NRFH F G CSCG++W
Sbjct: 586 STVRIMKNLRICVDCHEFMKAASMATRRFIIVRDANRFHHFSDGHCSCGEFW 637
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 103/214 (48%), Gaps = 7/214 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S ++ N+ V L+D+Y KCG + A +VF M++++ TWS+M+ G
Sbjct: 185 KLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSK 244
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL + + + ++ N T ++ AC ++ + EG++ +++ + G +
Sbjct: 245 NYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQ-MHAVIRKSGFGSNVFVA 303
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH---KNIDLAEEASRQLDQ 177
VD+ ++ G L+E+Y + K N +W ++ G H K + + E +Q D
Sbjct: 304 SSAVDMYAKCGSLRESYIIFSEVQEK-NIELWNTIISGFAKHARPKEVMILFEKMQQ-DG 361
Query: 178 LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRN 211
+ P + +LS + E+ R KLMR
Sbjct: 362 MHPNEVTFSSLLS-VCGHTGLVEEGRRFFKLMRT 394
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 116/265 (43%), Gaps = 13/265 (4%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ + N LI+ Y KCG +E AR+VF M ER++ +W+ MI + EAL F +M
Sbjct: 97 DVTLSNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMR 156
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
G K + T +L ACG E ++ + ++ + + + ++DL ++ G +
Sbjct: 157 NEGFKFSEFTISSVLSACGANCDALECKK-LHCLSMKTSLDLNLYVGTALLDLYAKCGMI 215
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV-----V 188
+A + +M K + V W +++ G KN + A R+ ++ N + +
Sbjct: 216 NDAVQVFESMQDK-SSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICA 274
Query: 189 LSNIYA--EAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIF 246
SN+ A E ++ V R N+ V + + ++ E EK
Sbjct: 275 CSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQ---EKNI 331
Query: 247 QMWEKLLDGMKLKGYIPNTSVVLLD 271
++W ++ G K P ++L +
Sbjct: 332 ELWNTIISGFA-KHARPKEVMILFE 355
>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g23330
gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 353 bits (906), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 236/352 (67%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y + GF NI + + L+DMY KCG ++ AR++F M +W+A+I G A+HG
Sbjct: 364 QLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHG 423
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA++ F +M G+KPN V F+ +L AC H+G VDE +F SMT YG+ ++EHY
Sbjct: 424 HGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHY 483
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+ DLL RAG L+EAY FI M ++P G VW LL C VHKN++LAE+ + ++ +D
Sbjct: 484 AAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDS 543
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +V++ N+YA RW+++A++R MR G++K P S I + H FV+GD +HP
Sbjct: 544 ENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHP 603
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+KI + + +++ M+ +GY+ +TS VL D++E+ K + L+ HSE+LA+ FG++NT PG
Sbjct: 604 SMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPG 663
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IR+ KN+R+C DCH A K IS+I REI+VRD +RFH F G+CSCGDYW
Sbjct: 664 TTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 88/177 (49%), Gaps = 6/177 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + G ++ + ++L+DMY K +E + RVF + R +W++++ G +G+
Sbjct: 264 IHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGR 323
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL F +M+ +KP V F ++ AC H+ + G++ + G I
Sbjct: 324 YNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQ-LHGYVLRGGFGSNIFIAS 382
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRV----HKNIDLAEEASRQ 174
+VD+ S+ G ++ A + M + + V W A++ G + H+ + L EE RQ
Sbjct: 383 ALVDMYSKCGNIKAARKIFDRMNV-LDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQ 438
>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
Length = 784
Score = 353 bits (906), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 168/354 (47%), Positives = 235/354 (66%), Gaps = 2/354 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + ++ + + N+LIDMY KCG L +RR+F M ERTV +W+AM+ G + HG
Sbjct: 233 QVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHG 292
Query: 61 QAKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY-GIIPQIE 118
+EA+ F M E +KP+ VTF+ +L C H G D G FY M + G P+IE
Sbjct: 293 LGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIE 352
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
HYGC+VDL RAG ++EA+EFI+ MP +P +WG+LLG CRVH+N+ + E +R+L ++
Sbjct: 353 HYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEI 412
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
+ N G +V+LSN+YA A RW+DV VR+LM+ V K PG S I +D +H F A D +
Sbjct: 413 ESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRS 472
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
HP+ E++F +L +K GY+P S VL D+++++KEK L HSEKLAL FGL+ TP
Sbjct: 473 HPRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTP 532
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GTP+RI+KNLR+C DCH K +S + RE+ +RD+NRFH G+CSCGDYW
Sbjct: 533 GGTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 586
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 5/171 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH + ++ + + + LI +Y KC CL ARRV EM ER V +W+AMI G + G
Sbjct: 31 RVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRG 90
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A EAL F +M+ G PN TF +L +C GR+ +S+ + I
Sbjct: 91 YASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQ-IHSLVIKTSFESHIFVG 149
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
++D+ ++AG + EA +P + + V A++ G + + L EEA
Sbjct: 150 SSLLDMYAKAGKICEARRVFDGLPER-DVVSCTAIISG---YAQLGLDEEA 196
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ F +I V ++L+DMY K G + ARRVF + ER V + +A+I G A G
Sbjct: 132 QIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLG 191
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F ++ G++ N VT+ +L A + +D GR+ +S + +
Sbjct: 192 LDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQ-VHSHVLRAKLPFYVVLQ 250
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ S+ G L + +MP + + W A+L G H
Sbjct: 251 NSLIDMYSKCGSLTYSRRIFDSMPER-TVISWNAMLVGYSKH 291
>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 805
Score = 353 bits (906), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 172/352 (48%), Positives = 227/352 (64%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIHG 60
+H + + GF +I L+DMY KCG + A R+F + V W++MI G +HG
Sbjct: 454 IHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHG 513
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+ ++KMIE G+KPN TF+ LL AC H V++G F SM ++ I P +HY
Sbjct: 514 HGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHY 573
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLLSRAG +EA I MP +P V ALL GCR HKNI+L + S +L LD
Sbjct: 574 ACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDA 633
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+N G +++LSNIYAEA RW+ V +R LMRN G+KKTPG+S + VH F AGD +HP
Sbjct: 634 MNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHP 693
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
E+I+ E L ++ GY+P+TS VL D++E+ K + L+ HSE+LA+ FGL+ TP G
Sbjct: 694 NWEEIYHFLESLRSAVETSGYVPDTSCVLRDVDEEMKVRMLWGHSERLAIAFGLLTTPAG 753
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ IRI KNLRVC DCH K IS+IV REI+VRD NRFH F G CSCGDYW
Sbjct: 754 SLIRITKNLRVCGDCHTVTKYISKIVKREIIVRDANRFHHFSNGECSCGDYW 805
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 85/152 (55%), Gaps = 1/152 (0%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
F N+ + ++D+Y KCG L+ A VF M++R V TW+AM+ GLA +G A++AL F
Sbjct: 362 FESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFA 421
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
+M E GI N VTF+ L+H+C H+G + GR + G I + +VD+ ++
Sbjct: 422 QMQEEGIAANSVTFVSLVHSCAHLGSLKRGRS-IHGHLFRLGFAFDIVNMTALVDMYAKC 480
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
G + A + I + V+W +++ G +H
Sbjct: 481 GKINLAERIFSHGSISKDVVLWNSMITGYGMH 512
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 81/177 (45%), Gaps = 6/177 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y G +I V + +DMY K G +E AR VF +M R + +W+AMI G +G
Sbjct: 253 MHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGL 312
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
E+ F++++ + T + LL C + G+ + +
Sbjct: 313 VGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRSFE--SNLILST 370
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+VDL S+ G L++A F+ N N + W A+L G + + AE+A R Q+
Sbjct: 371 AIVDLYSKCGSLKQA-TFVFNRMKDRNVITWTAMLVGLAQNGH---AEDALRLFAQM 423
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 2/152 (1%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
+ G +N V +++I VK G + A+RVF M + V W+++I G G A
Sbjct: 158 EKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQ 217
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F +M GIKP+ +T L+ ACG +G + G + + G+ I VD+
Sbjct: 218 LFFEMHGSGIKPSPITMTSLIQACGGIGNLKLG-KCMHGYVLGLGLGNDILVLTSFVDMY 276
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
S+ G ++ A MP + N V W A++ GC
Sbjct: 277 SKMGDIESARWVFYKMPTR-NLVSWNAMISGC 307
>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 353 bits (906), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 175/345 (50%), Positives = 232/345 (67%), Gaps = 4/345 (1%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G N+R LIDMY KCG + AR+VF + + VF W+AMI GLA HG +EA+T F
Sbjct: 229 GLEANVRT--ALIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLF 286
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
++M G++P+ T +L AC + GW EG +F SM +YGI P I+HYGCMVDLL+R
Sbjct: 287 DQMESFGLRPDERTMTAVLSACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLAR 346
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE--ASRQLDQLDPLNNGYHV 187
G L EA EFIR MPI+P+ V+W L+ +VH +ID +E+ R L ++D + G +V
Sbjct: 347 TGHLDEAEEFIRKMPIEPDVVLWRTLIWASKVHGDIDRSEQLMKDRGLLKMDSDDCGSYV 406
Query: 188 VLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQ 247
+L N+YA A +W D A++R+LM G+ K PG S I VDG+VHEF AGD H +AEKI+
Sbjct: 407 LLGNVYASAGKWHDKAKMRELMNQKGLSKPPGCSRIEVDGLVHEFAAGDSGHIEAEKIYA 466
Query: 248 MWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMK 307
+++ + +K +GY P S VLL+I+ KEK L HSEKLA+ FGL+ T PGT IRI+K
Sbjct: 467 KLDEVEERLKAEGYHPKLSEVLLEIDNKEKAFQLRHHSEKLAVAFGLIKTSPGTEIRIVK 526
Query: 308 NLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
NLR CEDCH+ KLIS+I ++I+VRDR RFH F G CSC DYW
Sbjct: 527 NLRSCEDCHSVLKLISKIYQQDIIVRDRIRFHHFINGDCSCKDYW 571
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 5/179 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SG + V N LI MY CG A +VF +M +R V +W++MI G
Sbjct: 117 QLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDD 176
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A EA+ F +M+E G++PN T + +L AC G V GRR + E I +
Sbjct: 177 RALEAIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRR-VQGVIEERKIGLEANVR 235
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
++D+ ++ G + A + + + + W A++ G H L EEA DQ++
Sbjct: 236 TALIDMYAKCGSIGSARKVFDGI-VNKDVFAWTAMISGLANH---GLCEEAVTLFDQME 290
>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 353 bits (906), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 171/354 (48%), Positives = 238/354 (67%), Gaps = 4/354 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERT---VFTWSAMIQGLAI 58
+HE+ Q+G+ +++ V LIDMY KCGC+ AR VF ++ R V +W+AMI G A+
Sbjct: 198 IHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGYAM 257
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
HG A EAL F +M + KP+ +TF+G+L AC H G ++EG FF +M +Y I P ++
Sbjct: 258 HGHATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQ 316
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
HY CMVDLL +G L EAY I M + P+ VWGALL C++H N++L E A +L +L
Sbjct: 317 HYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIEL 376
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
+P + G +V+LSNIYA+A +WE VA++RKLM + +KK+ S I V VH F++GD +
Sbjct: 377 EPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTS 436
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
HP +++I+ E++ MK GY P+T V D+E+ EK + HSE+LA+ FGL++TP
Sbjct: 437 HPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLISTP 496
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PGT + I KNLR+CEDCH A K IS+I REI VRD NR+H F+ G CSCGDYW
Sbjct: 497 PGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 550
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 88/179 (49%), Gaps = 7/179 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +GF + + L+++Y C L AR +F + + +F W+ +I+G A +G
Sbjct: 96 QLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNG 155
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ A+ + +M + G+ P+ TF +L AC + ++ GR + + G +
Sbjct: 156 PYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGRE-IHEHVVQTGWEKDVFVG 214
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV--WGALLGGCRVH----KNIDLAEEASR 173
++D+ ++ G + A E + ++ +V W A++ G +H + +DL EE +R
Sbjct: 215 AALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGHATEALDLFEEMNR 273
>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
Length = 855
Score = 353 bits (905), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 161/338 (47%), Positives = 229/338 (67%)
Query: 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
+ V N LIDMY K G ++ AR VF M+ R V +W++++ G +HG+ +EAL F++M +
Sbjct: 518 LYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQK 577
Query: 75 IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ 134
+G +G+TF+ +L+AC H G VD+G +F+ M +GI P EHY CMVDLL RAG L
Sbjct: 578 LGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLN 637
Query: 135 EAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYA 194
EA E I+NM ++P VVW ALL R+H NI+L E A+ +L +L N+G + +LSN+YA
Sbjct: 638 EAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYA 697
Query: 195 EAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLD 254
A RW+DVAR+R LM++ G++K PG S I F GD +HP++E+I+ + L+
Sbjct: 698 NARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLIK 757
Query: 255 GMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCED 314
+K GY+P TS L D++++EK L+ HSEKLA+ +G++ T PG PIRI KNLR+C D
Sbjct: 758 RIKDMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAVAYGILTTAPGQPIRIHKNLRICGD 817
Query: 315 CHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
CH+A IS I++ EIV+RD +RFH F+ GSCSC YW
Sbjct: 818 CHSALTYISMIIDHEIVLRDSSRFHHFKKGSCSCRSYW 855
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 12/174 (6%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
++ V N LIDMY KC AR +F IE +++ V TW+ MI G A HG+A +AL F +
Sbjct: 411 DLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQ 470
Query: 72 MI--EIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYG-CMVDLL 127
+ + +KPN T L AC +G + GR+ Y++ E ++ + G C++D+
Sbjct: 471 IFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENE--SEVLYVGNCLIDMY 528
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
S++G + A NM ++ N V W +L+ G +H EEA DQ+ L
Sbjct: 529 SKSGDIDAARAVFDNMKLR-NVVSWTSLMTGYGMHGR---GEEALHLFDQMQKL 578
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 90/184 (48%), Gaps = 8/184 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERT---VFTWSAMIQGLAI 58
VH +G N+ +CN+++ MY +CG L+ A ++F E+ ER + +W++++
Sbjct: 149 VHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQ 208
Query: 59 HGQAKEALTSFNKM---IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP 115
GQ++ AL +M + ++P+ +T + +L AC + + G++ + + G++
Sbjct: 209 GGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQ-VHGFSVRNGLVD 267
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
+ +V + ++ + EA + + K + V W A++ G + D A + +
Sbjct: 268 DVFVGNALVSMYAKCSKMNEANKVFEGIK-KKDVVSWNAMVTGYSQIGSFDSALSLFKMM 326
Query: 176 DQLD 179
+ D
Sbjct: 327 QEED 330
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH +S ++G ++ V N L+ MY KC + A +VF ++++ V +W+AM+ G + G
Sbjct: 255 QVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIG 314
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
AL+ F M E IK + +T+ ++ G E F M YG+ P +
Sbjct: 315 SFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQL-YGLEPNVVTL 373
Query: 121 GCMVDLLSRAGFL 133
++ + G L
Sbjct: 374 ASLLSGCASVGAL 386
>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 353 bits (905), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 166/351 (47%), Positives = 236/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y ++G+ + V N+L+DMY KCG L AR +F ++ + + +W+ MI G +HG
Sbjct: 521 IHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGF 580
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA+ FN+M + GI+P+ ++F+ LL+AC H G VDEG RFF M E I P +EHY
Sbjct: 581 GKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYA 640
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VD+L+R G L +AY FI NMPI P+ +WGALL GCR+H ++ LAE + ++ +L+P
Sbjct: 641 CIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEKVFELEPE 700
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+V+++NIYAEAE+WE+V R+RK + G++K PG S I + G V+ FVAGD ++P+
Sbjct: 701 NTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPE 760
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
EKI + M +GY P T L+D EE EKE+ L HSEKLA+ G++++ G
Sbjct: 761 TEKIEAFLRGVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGK 820
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR+ KNLRVC DCH K +S++ REIV+RD NRFH F+ G CSC +W
Sbjct: 821 IIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + ++ F R R CNTL+DMY KCG L+ A+ VF EM R+V ++++MI G A G
Sbjct: 318 VHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGL 377
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A EA+ F +M E GI P+ T +L+ C +DEG+R + E + I
Sbjct: 378 AGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKR-VHEWIKENDMGFDIFVSN 436
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ ++ G ++EA M +K + + W ++GG
Sbjct: 437 ALMDMYAKCGSMREAELVFSEMRVK-DIISWNTVIGG 472
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 3/163 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVHE+ ++ +I V N L+DMY KCG + A VF EM + + +W+ +I G + +
Sbjct: 418 RVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNC 477
Query: 61 QAKEALTSFN-KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
A EAL+ FN ++E P+ T +L AC + D+GR + G
Sbjct: 478 YANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGRE-IHGYIMRNGYFSDRHV 536
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ ++ G L A ++ K + V W ++ G +H
Sbjct: 537 ANSLVDMYAKCGALLLARLLFDDITSK-DLVSWTVMIAGYGMH 578
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 110/260 (42%), Gaps = 43/260 (16%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y +SGF V N+L+ Y+K ++ AR+VF EM ER V +W+++I G +G
Sbjct: 216 QLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNG 275
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR---------------RFFY 105
A++ L+ F +M+ GI+ + T + + C + GR RF
Sbjct: 276 LAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCN 335
Query: 106 SMTTEYGIIPQIE---------------HYGCMVDLLSRAGFLQEAYEFIRNMP---IKP 147
++ Y ++ Y M+ +R G EA + M I P
Sbjct: 336 TLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISP 395
Query: 148 NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSN----IYAEAERWEDVA 203
+ A+L C ++ +D E R + + + G+ + +SN +YA+ +
Sbjct: 396 DVYTVTAVLNCCARNRLLD---EGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAE 452
Query: 204 RVRKLMRNLGVKKTPGWSSI 223
V MR VK W+++
Sbjct: 453 LVFSEMR---VKDIISWNTV 469
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V + +GF + + + L MY CG L+ A RVF +++ W+ ++ LA G
Sbjct: 116 VDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGD 175
Query: 62 AKEALTSFNKMIEIGIKPNGVTF 84
++ F KM+ G++ + TF
Sbjct: 176 FSGSIGLFKKMMSSGVEMDSYTF 198
>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
Length = 703
Score = 353 bits (905), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 169/353 (47%), Positives = 233/353 (66%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH +S F +I V + LI MY+KCG L +RVF + + W+++I G A HG
Sbjct: 351 QVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHG 410
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++AL F++M G P+ +TFIG+L ACG+ G V EG F SM ++Y + + EHY
Sbjct: 411 FGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHY 470
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG L EA I NMP++ + +VWGALL CR HKN+DLAE A+++L QL+P
Sbjct: 471 ACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLEP 530
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFV-AGDETH 239
+ G +++LSN+YA RW+DVA +RK MR V K+PG S I VD VH F G +H
Sbjct: 531 SSAGPYILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGGSASH 590
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ E I + EKL ++ GY P+ S V+ D++E++K L HSEK+A+ +GL+ P
Sbjct: 591 PEHEMIMKKLEKLGASLREAGYCPDGSFVMHDVDEEDKVHSLRHHSEKMAVAYGLLKVPV 650
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIR+MKNLRVC DCH+A KLI+++ REI++RD NRFH F+ G CSC D+W
Sbjct: 651 GKPIRVMKNLRVCGDCHSAIKLIAQVTGREIILRDANRFHHFKDGLCSCRDFW 703
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 14/171 (8%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN N L+ YVK G + AR+VF +M ER V +W++M++G G EA F +M
Sbjct: 76 RNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRM 135
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E + V GL+ G VDE RR F M ++ M+ L G
Sbjct: 136 PEKNVVSWTVMLGGLIED----GRVDEARRLF-DMIPVKDVVASTN----MIGGLCSEGR 186
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183
L EA E MP + N V W +++ G ++ +D+A R+L ++ P N
Sbjct: 187 LSEAREIFDEMPQR-NVVAWTSMISGYAMNNKVDVA----RKLFEVMPDKN 232
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 13/171 (7%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
+S F + + I + + G ++ AR +F +++ +TV +W+A++ G + + EA
Sbjct: 9 RSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQK 68
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F+KM E N +++ GL+ G + E R+ F M + + MV
Sbjct: 69 LFDKMPE----RNTISWNGLVSGYVKNGMISEARKVFDKMPER-----NVVSWTSMVRGY 119
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ G + EA MP K N V W +LGG +D EA R D +
Sbjct: 120 VQEGLIDEAELLFWRMPEK-NVVSWTVMLGGLIEDGRVD---EARRLFDMI 166
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+ + CN +I + G + AR VF +M+E+ TWSA+I+ G EAL F+ M
Sbjct: 262 KPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLM 321
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRR 102
G++PN + I +L CG + +D GR+
Sbjct: 322 QREGVRPNFPSIISILSVCGSLASLDHGRQ 351
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 101/247 (40%), Gaps = 27/247 (10%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+RN+ ++I Y ++ AR++F M ++ TW+AM++G G+ EA F
Sbjct: 199 QRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKA 258
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M +KP G++ G G V + R F M + + ++ + R G
Sbjct: 259 M---PVKPVAACN-GMIMGFGLNGEVGKARWVFDQMKEK-----DDGTWSALIKIYERKG 309
Query: 132 FLQEA---YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL--DQLDPLNNGYH 186
F EA + ++ ++PN ++L C ++D + QL D L+
Sbjct: 310 FELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFD-LDIYVS 368
Query: 187 VVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIF 246
VL +Y + D+ +++ K W+SI +AG H EK
Sbjct: 369 SVLITMYIKC---GDLVTGKRVFDRFSSKDIVMWNSI---------IAGYAQHGFGEKAL 416
Query: 247 QMWEKLL 253
+++ ++
Sbjct: 417 EVFHEMF 423
>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Vitis vinifera]
Length = 1053
Score = 353 bits (905), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 168/354 (47%), Positives = 235/354 (66%), Gaps = 2/354 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + ++ + + N+LIDMY KCG L +RR+F M ERTV +W+AM+ G + HG
Sbjct: 700 QVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHG 759
Query: 61 QAKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY-GIIPQIE 118
+EA+ F M E +KP+ VTF+ +L C H G D G FY M + G P+IE
Sbjct: 760 LGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIE 819
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
HYGC+VDL RAG ++EA+EFI+ MP +P +WG+LLG CRVH+N+ + E +R+L ++
Sbjct: 820 HYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEI 879
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
+ N G +V+LSN+YA A RW+DV VR+LM+ V K PG S I +D +H F A D +
Sbjct: 880 ESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRS 939
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
HP+ E++F +L +K GY+P S VL D+++++KEK L HSEKLAL FGL+ TP
Sbjct: 940 HPRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTP 999
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GTP+RI+KNLR+C DCH K +S + RE+ +RD+NRFH G+CSCGDYW
Sbjct: 1000 GGTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 1053
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 5/171 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH + ++ + + + LI +Y KC CL ARRV EM ER V +W+AMI G + G
Sbjct: 498 RVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRG 557
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A EAL F +M+ G PN TF +L +C GR+ +S+ + I
Sbjct: 558 YASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQ-IHSLVIKTSFESHIFVG 616
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
++D+ ++AG + EA +P + + V A++ G + + L EEA
Sbjct: 617 SSLLDMYAKAGKICEARRVFDGLPER-DVVSCTAIISG---YAQLGLDEEA 663
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ F +I V ++L+DMY K G + ARRVF + ER V + +A+I G A G
Sbjct: 599 QIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLG 658
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F ++ G++ N VT+ +L A + +D GR+ +S + +
Sbjct: 659 LDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQ-VHSHVLRAKLPFYVVLQ 717
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ S+ G L + +MP + + W A+L G H
Sbjct: 718 NSLIDMYSKCGSLTYSRRIFDSMPER-TVISWNAMLVGYSKH 758
>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 159/352 (45%), Positives = 237/352 (67%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y + GF + L+ MY KCG + A RVF E + +F+W+++I G A +G
Sbjct: 325 KVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNG 384
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q EA+ F +++ G +P+ +TF+G+L AC H G VD+G +F+S+ +YG+ +HY
Sbjct: 385 QPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHY 444
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C++DLL+R+G EA I M +KP+ +W +LLGGCR+H N+ LA+ A+ L +++P
Sbjct: 445 ACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEP 504
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N +V L+NIYA A W +VA++RK M + GV K PG S I + VH F+ GD++HP
Sbjct: 505 ENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHP 564
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++++I + KL MK +G++P+T+ VL D+E+++KE+ L HSEKLA+ FG+++TP G
Sbjct: 565 KSKEINEFLGKLSKRMKEEGFVPDTNFVLHDVEDEQKEQNLSYHSEKLAVAFGIISTPEG 624
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPI++ KNLR C DCH A K IS+I NR+I+VRD NRFH F+ G CSC DYW
Sbjct: 625 TPIKVFKNLRTCVDCHTAIKFISKITNRKIIVRDSNRFHFFEDGHCSCRDYW 676
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y ++G + V + L DMY KCG +E AR +F +M +R + TW+AMI G+
Sbjct: 225 IHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGR 284
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KE F ++ GI+PN TF G+L+AC + + G++ + T G P
Sbjct: 285 RKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKK-VHGYMTRVGFDPFSFAAS 343
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V + S+ G + A + P +P+ W +L+ G
Sbjct: 344 ALVHMYSKCGNMVSAERVFKETP-QPDLFSWTSLIAG 379
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH++ SGF + + N L++MY KC L ++++F EM ER + +W+ +I G A G
Sbjct: 91 KVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMG 150
Query: 61 QAKEALTSFNKMIE 74
+EA + F+KM E
Sbjct: 151 LLQEAKSLFDKMPE 164
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 70/186 (37%), Gaps = 44/186 (23%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ N LI Y K G L+ A+ +F +M ER F+W+AMI G H + EAL F M
Sbjct: 134 RDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMM 193
Query: 73 ------------------------------------IEIGIKPNGVTFIGLLHACGHMGW 96
+ G+ + V + L G G
Sbjct: 194 KRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGS 253
Query: 97 VDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM---PIKPNGVVWG 153
++E R F M I + M+D + G +E ++ ++ I+PN +
Sbjct: 254 IEEARHIFDKMVDR-----DIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFS 308
Query: 154 ALLGGC 159
+L C
Sbjct: 309 GVLNAC 314
>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
Length = 664
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 228/351 (64%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H +S + GF +I V + L+DMY KCG + AR +F M R V +W+AMI G A+HG+
Sbjct: 314 AHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGE 373
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+ A+ F M KP+ VTF +L AC GW +EGR +F M ++GI P++EHY
Sbjct: 374 AENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYA 433
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMV LL RAG L +AY+ I MP +P+G +WG+LLG CRVH N+ LAE A+ L QL+P
Sbjct: 434 CMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAEVAAENLFQLEPE 493
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V+LSNIYA + W+ V R+R +M+ +G+KK G S I + VH +AGD +HP
Sbjct: 494 NAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWIEIKNKVHMLLAGDSSHPM 553
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
I + + L M+ G+ P+T VL D+EE+EK+ L HSEKLA+ GL++T GT
Sbjct: 554 MAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQEKDDILSVHSEKLAVALGLISTSHGT 613
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P++++KNLR+C DCH A K IS REI VRD NRFH F+ G CSC DYW
Sbjct: 614 PLQVIKNLRICGDCHEAMKFISSFERREIYVRDTNRFHHFKDGKCSCADYW 664
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 88/208 (42%), Gaps = 40/208 (19%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y ++G R + V LIDMY KCG + RVF E V + +A++ GL+ +
Sbjct: 177 QLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNA 236
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q EAL F + + GI+ N V++ ++ C G E F M +E GI P
Sbjct: 237 QVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSE-GIEPNSVTI 295
Query: 121 GC-----------------------------------MVDLLSRAGFLQEAYEFIRNMPI 145
C +VD+ ++ G +++A MP
Sbjct: 296 PCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPY 355
Query: 146 KPNGVVWGALLGGCRVHKNIDLAEEASR 173
+ N V W A++GG +H AE A R
Sbjct: 356 R-NVVSWNAMIGGYAMHGE---AENAVR 379
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G R+ V ++L+ Y++ G AR V M RTV WSA+I A HG A+ A
Sbjct: 50 GVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLL 109
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+M G++PN +T+ GL+ G + M E G +P C + +
Sbjct: 110 ERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGE-GFLPDATGVSCALSAVGD 168
Query: 130 AG 131
G
Sbjct: 169 VG 170
>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Glycine max]
Length = 1611
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 164/336 (48%), Positives = 227/336 (67%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V +L+DMY KCG +E AR +F R + +W+AMI GLA HG AKEAL F M G
Sbjct: 1276 VMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRG 1335
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
+ P+ VTFIG+L AC H G V E FYSM YGI P+IEHY C+VD LSRAG ++EA
Sbjct: 1336 VMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEA 1395
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
+ I +MP + + ++ LL CRV + + + + +L L+P ++ +V+LSN+YA A
Sbjct: 1396 EKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAA 1455
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGM 256
+WE+VA R +MR + VKK PG+S + + VH FVAGD +H + + I+ E ++ +
Sbjct: 1456 NQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRI 1515
Query: 257 KLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCH 316
+ +GY+P+T L+D+EE++KE LY HSEKLA+ +GLM TPP T +R++KNLRVC DCH
Sbjct: 1516 REEGYVPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCH 1575
Query: 317 AAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+A K IS++ REIV+RD NRFH F+ G CSCGDYW
Sbjct: 1576 SAIKYISKVFKREIVLRDANRFHHFRNGICSCGDYW 1611
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 85/165 (51%), Gaps = 4/165 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + GF ++ V + ++DMY+KCG +E ARRVF E+ W+ MI G +G
Sbjct: 1159 QIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENG 1218
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTT-EYGIIPQIEH 119
Q + AL ++++M ++P+ TF L+ AC + +++GR+ ++ P +
Sbjct: 1219 QEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFV-- 1276
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKN 164
+VD+ ++ G +++A + + W A++ G H N
Sbjct: 1277 MTSLVDMYAKCGNIEDARGLFKRTNTR-RIASWNAMIVGLAQHGN 1320
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 16/193 (8%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SG + + V N LI+MYVK G + AR VF +M E + +W+ MI G + G
Sbjct: 956 QIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSG 1015
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF----YSMTTEYGIIPQ 116
+ ++ F ++ + P+ T +L AC + EG + ++ + G++
Sbjct: 1016 LEECSVGMFVHLLRDSLLPDQFTVASVLRACSSL----EGGYYLATQIHACAMKAGVVLD 1071
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNID-------LAE 169
++D+ S+ G ++EA EF+ + W A++ G V + L +
Sbjct: 1072 SFVSTALIDVYSKRGKMEEA-EFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQ 1130
Query: 170 EASRQLDQLDPLN 182
E+ + DQ+ +N
Sbjct: 1131 ESGERSDQITLVN 1143
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 78/159 (49%), Gaps = 2/159 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++G + V LID+Y K G +E A +F+ + + +W+A++ G + G
Sbjct: 1058 QIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSG 1117
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+AL + M E G + + +T + A G + + +G++ +++ + G +
Sbjct: 1118 DFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQ-IHAVVVKRGFNLDLFVT 1176
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
++D+ + G ++ A +P P+ V W ++ GC
Sbjct: 1177 SGVLDMYLKCGEMESARRVFSEIP-SPDDVAWTTMISGC 1214
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 68/159 (42%), Gaps = 5/159 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE--RTVFTWSAMIQGLAI 58
R H SG + V N LI MY KCG L AR++F + R + TW+A++ LA
Sbjct: 677 RAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAA 736
Query: 59 HG-QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
H ++ + F + + T + C + + + G+ +
Sbjct: 737 HADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMC-LLSASPSASESLHGYAVKIGLQWDV 795
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
G +V++ ++ G ++EA M ++ + V+W ++
Sbjct: 796 FVAGALVNIYAKFGLIREARVLFDGMAVR-DVVLWNVMM 833
Score = 44.3 bits (103), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ + G + ++ V L+++Y K G + AR +F M R V W+ M++
Sbjct: 782 LHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCL 841
Query: 62 AKEALTSFNKMIEIGIKPNGVTF 84
EA+ F++ G +P+ VT
Sbjct: 842 EYEAMLLFSEFHRTGFRPDDVTL 864
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/116 (19%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 46 VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFY 105
V W+ + G+A EA+ F MI + +G+TF+ +L + ++ G++ +
Sbjct: 900 VIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQ-IH 958
Query: 106 SMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRV 161
+ G+ + C++++ +AG + A M + + + W ++ GC +
Sbjct: 959 GIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMN-EVDLISWNTMISGCTL 1013
>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 229/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H ++ ++ V LIDMY KCG L+ A +F ++ + W+AMI +HG
Sbjct: 217 RIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHG 276
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++AL F +M +KP+ +TF+ LL AC H G V + + F M EYGI P ++HY
Sbjct: 277 DGEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHY 336
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDL RAG L+ A+ FI+ MPI+P+ WGALL CR+H NI+L + AS +L ++D
Sbjct: 337 GCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDS 396
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N GY+V+LSNIYA +WE V VR L R+ G++K PGWSSI ++ V F G++THP
Sbjct: 397 ENVGYYVLLSNIYANVGKWEGVDDVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHP 456
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ E+I++ L +K GY+P+ VL D+EE EKE L HSE+LA+ +G+++T P
Sbjct: 457 KCEEIYRELRDLTSKIKTIGYVPDFCFVLQDVEEDEKEHILMGHSERLAIAYGIISTSPK 516
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPIRI KNLRVC DCH K IS I REI+VRD +RFH F+ G+CSCGDYW
Sbjct: 517 TPIRIFKNLRVCGDCHTVTKFISIITEREIIVRDSSRFHHFKGGTCSCGDYW 568
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 4/175 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + G + V N LI+MY K G L A++VF + + V +W+ +I G A +G
Sbjct: 117 IHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVF-GLLIKDVVSWNTLITGYAQNGL 175
Query: 62 AKEALTSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A EA+ + M E I PN T++ +L A H+G + +G R + + + +
Sbjct: 176 ASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMR-IHGQVIKNCLYSDVFVG 234
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
C++D+ + G L +A +P + N V W A++ VH + + A E R++
Sbjct: 235 TCLIDMYGKCGKLDDAISLFYQVP-RKNSVPWNAMISCYGVHGDGEKALELFREM 288
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 87/171 (50%), Gaps = 6/171 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + GF ++ V +L+ MY + G + AR++F +M R +W+AMI G +G
Sbjct: 15 KIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQNG 74
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A EAL ++M G+K + +T +L C +G + G + + ++G+ ++
Sbjct: 75 NAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSG-KLIHLYVIKHGLEFELFVS 133
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
++++ ++ G L A + + + IK + V W L+ G + LA EA
Sbjct: 134 NALINMYAKFGSLGHAQK-VFGLLIK-DVVSWNTLITG---YAQNGLASEA 179
>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 231/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+V S ++G NI V ++LIDMY KCG +E A VF +EE+ V W+A++ G + H
Sbjct: 270 QVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHV 329
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++ EA+ F KM ++GI PN +T+I +L AC H+G V++GR++F M + + P + HY
Sbjct: 330 RSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHY 389
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVD+L RAG L EA +FI MP +WG+LL CR+++N++LAE A++ L +++P
Sbjct: 390 SCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEP 449
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G HV+LSNIYA +RWE+VAR R L++ KK G S I + VH F+ G+ HP
Sbjct: 450 HNAGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHP 509
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ E L+ MK GY T L D+EE K++ L HSEKLALTFG+M P G
Sbjct: 510 RIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHG 569
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRIMKNLR+C DCH+ KL S I REI+VRD NRFH F+ G CSCG++W
Sbjct: 570 APIRIMKNLRICGDCHSFMKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 621
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 87/162 (53%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ ++ N+ V L+D+Y KCG ++ A VF M ER+ TWS+M+ G +
Sbjct: 169 QLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNE 228
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F++ +G++ N T L AC + EG++ +++ + GI I
Sbjct: 229 LYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQ-VQAVSCKTGIGSNIFVI 287
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++ G ++EAY ++ K N V+W A+L G H
Sbjct: 288 SSLIDMYAKCGIIEEAYTVFSSVEEK-NVVLWNAILSGFSRH 328
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 75/149 (50%), Gaps = 2/149 (1%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G R + N L++MY KCG +E AR++F EM R++ +W+ M+ +G ++AL F
Sbjct: 77 GLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLF 136
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+M + G + T ++ AC V E ++ + + + + ++D+ ++
Sbjct: 137 MQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQ-LHGFALKTALDSNVFVGTALLDVYAK 195
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
G +++A MP + + V W +++ G
Sbjct: 196 CGLVKDANLVFECMPERSD-VTWSSMVAG 223
>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 786
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 170/353 (48%), Positives = 234/353 (66%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIH 59
++H + +SG ++ V N LI MY K G + A R F + ER +W++MI LA H
Sbjct: 434 QIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQH 493
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G A+EAL F M+ G++P+ +T++G+ AC H G V++GR++F M IIP + H
Sbjct: 494 GHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSH 553
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CMVDL RAG LQEA EFI MPI+P+ V WG+LL CRV+KNIDL + A+ +L L+
Sbjct: 554 YACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLE 613
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N+G + L+N+Y+ +WE+ A++RK M++ VKK G+S I V VH F D H
Sbjct: 614 PENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIH 673
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
PQ +I+ +K+ D +K GY+P+T+ VL D+EE+ KE+ L HSEKLA+ FGL++TP
Sbjct: 674 PQKNEIYITMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPD 733
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T +RIMKNLRVC DCH A K IS++V REI+VRD RFH F+ G CSC DYW
Sbjct: 734 KTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 4/153 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
L+D Y+K G + A+ +F +++R V W+AMI G HG EA+ F M+ +
Sbjct: 351 TALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQR 410
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
PN T +L + + G++ S + G I + ++ + ++AG + A
Sbjct: 411 PNSYTLAAMLSVASSLASLGHGKQIHGS-AVKSGEIYSVSVSNALITMYAKAGSITSASR 469
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
+ + + V W +++ H + AEEA
Sbjct: 470 AFDLIRCERDTVSWTSMIIALAQHGH---AEEA 499
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 79/191 (41%), Gaps = 34/191 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFI--------------------- 39
+VH + + G R N+ V N+L++MY KCG A+ VF
Sbjct: 167 KVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVG 226
Query: 40 ----------EMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI-EIGIKPNGVTFIGLL 88
+M ER + TW++MI G G AL F+KM+ + + P+ T +L
Sbjct: 227 QMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVL 286
Query: 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPN 148
AC ++ + G + + T I I ++ + SR G ++ A I K
Sbjct: 287 SACANLEKLCIGEQIHSHIVTTGFDISGIV-LNALISMYSRCGGVETARRLIEQRGTKDL 345
Query: 149 GVV-WGALLGG 158
+ + ALL G
Sbjct: 346 KIEGFTALLDG 356
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 73/160 (45%), Gaps = 5/160 (3%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NT++ Y K G ++ + F + +R +W+ MI G GQ +A+ +M+ GI+
Sbjct: 84 NTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIE 143
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ T +L + ++ G++ +S + G+ + ++++ ++ G A
Sbjct: 144 PSQFTLTNVLASVAATRCLETGKK-VHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKV 202
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
M +K + W A++ +H + + A Q +Q+
Sbjct: 203 VFDRMVVK-DISSWNAMIA---LHMQVGQMDLAMAQFEQM 238
>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic [Vitis vinifera]
Length = 658
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 167/351 (47%), Positives = 237/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + G + V + L+ +Y +CG LE RVF ME+R V +W+++I IHG
Sbjct: 308 MHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGIHGF 367
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++A+ F +MI+ G+ P+ ++F+ +L AC H G V+EG+ F SM + I P +EHY
Sbjct: 368 GRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFESMVRGHKIFPSVEHYA 427
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RA L EA + I +M I+P VWG+LLG CR+H N++LAE A+ +L +L+P
Sbjct: 428 CMVDLLGRANRLDEAAKIIDDMRIEPGPKVWGSLLGSCRIHCNVELAERATSRLFELEPT 487
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V+L++IYAEA+ W +V RV+ L+ G++K PG S I + ++ F++ DE +PQ
Sbjct: 488 NAGNYVLLADIYAEAKMWNEVKRVKMLLEARGLQKVPGRSCIEIRRKIYSFMSVDEFNPQ 547
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E++ + KL MK KGY+P+T VVL D++ +EKE+ + HSEKLAL FGL+N+ G
Sbjct: 548 IEQLHALLLKLSMEMKEKGYVPDTKVVLYDLDPEEKERIVLGHSEKLALAFGLINSKKGE 607
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI KNLR+CEDCH+ K IS+ NREI+VRD NRFH FQ G CSCGDYW
Sbjct: 608 TIRITKNLRLCEDCHSVTKFISKFANREILVRDVNRFHLFQDGVCSCGDYW 658
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 4/163 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + GF ++ + TL+DMY + GC+ A RVF +M + V +WSAMI + +G+
Sbjct: 205 IHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGK 264
Query: 62 AKEALTSFNKMI--EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
EAL F KM+ + PN VT + +L AC + +++G + + G+ +
Sbjct: 265 PLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQG-KLMHGYILRRGLDSILPV 323
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+V + +R G L+ + M K + V W +L+ +H
Sbjct: 324 VSALVTVYARCGNLELGHRVFERME-KRDVVSWNSLISSYGIH 365
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 78/160 (48%), Gaps = 11/160 (6%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ S+Q F + LI+MY + ++ AR+VF + +RT++ W+A+ + L + G
Sbjct: 105 IHDGSDQDPF-----LATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGY 159
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHAC----GHMGWVDEGRRFFYSMTTEYGIIPQI 117
+E L + +M IG+ + T+ +L AC + + GR + +G +
Sbjct: 160 GREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGRE-IHGHILRHGFEGHV 218
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
++D+ +R G + A MP+K N V W A++
Sbjct: 219 HIMTTLLDMYARFGCVLNASRVFDQMPVK-NVVSWSAMIA 257
>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 568
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 168/351 (47%), Positives = 236/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + ++ G + + + LIDMY +CG ++ + +VF EM R V TW+A+I GLA+HG+
Sbjct: 218 VHAFISRIGVNLTVSLGSALIDMYSRCGDIDRSVKVFDEMPHRNVVTWTALINGLAVHGR 277
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL +F M+E G+KP+ + F+G+L AC H G V+EGRR F SM +EYGI P +EHYG
Sbjct: 278 GREALEAFYDMVESGLKPDRIAFMGVLVACSHGGLVEEGRRVFSSMWSEYGIEPALEHYG 337
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG + EA++F+ M ++PN V+W LLG C H + LAE+A ++ +LDP
Sbjct: 338 CMVDLLGRAGMVLEAFDFVEGMRVRPNSVIWRTLLGACVNHNLLVLAEKAKERIKELDPH 397
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +V+LSN Y W VR MR + K PG S + +D V HEFV+GD +HPQ
Sbjct: 398 HDGDYVLLSNAYGGVGNWVKKEGVRNSMRESKIVKEPGLSLVHIDQVAHEFVSGDNSHPQ 457
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E+I + ++D +KL GY P+T VL DI+E+EKE L HSEKLA+ F L+
Sbjct: 458 WEEITRFLGSVIDTVKLGGYTPSTKNVLHDIQEEEKEHSLGYHSEKLAVAFVLLYHRDRK 517
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR++KNLR+C DCH+ K +S +R+IV+RDR+RFH F+ GSCSC D+W
Sbjct: 518 TIRVIKNLRICYDCHSFMKHVSGFFDRDIVIRDRSRFHHFRKGSCSCRDFW 568
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 4/163 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + GF NI V N LI+ Y G L + ++F EM R + +WS++I A G
Sbjct: 115 IHTLVLKLGFHSNIYVQNALINSYGTSGSLHASLKLFDEMPRRDLISWSSLISCFAKRGL 174
Query: 62 AKEALTSFNKM--IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
EALT F +M E I P+GV + ++ A +G ++ G + ++ + G+ +
Sbjct: 175 PDEALTLFQQMQLKESDILPDGVVMLSVISAVSSLGALELG-IWVHAFISRIGVNLTVSL 233
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ SR G + + + MP + N V W AL+ G VH
Sbjct: 234 GSALIDMYSRCGDIDRSVKVFDEMPHR-NVVTWTALINGLAVH 275
>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
Length = 837
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 167/339 (49%), Positives = 232/339 (68%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
+I V N LI+M VK G +E AR +F M +R V TW+ MI G ++HG A+EAL F++M+
Sbjct: 499 HIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRML 558
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
+ +PN VTF+G+L AC G+V+EGRRFF + GI+P +E YGCMVDLL RAG L
Sbjct: 559 KERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGEL 618
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIY 193
EA I MP+KPN +W LL CR++ N+D+AE A+ + +P + +V LS++Y
Sbjct: 619 DEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMY 678
Query: 194 AEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLL 253
A A WE+VA+VRK+M + GV+K G + I V+G +H FV D +HPQA +I+ +L+
Sbjct: 679 AAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDRSHPQAGEIYAELARLM 738
Query: 254 DGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCE 313
+K +GYIP T VL ++ E+EKE+ + HSEKLA+ +G+++ P G PIRI KNLRVC
Sbjct: 739 TAIKREGYIPVTQNVLHNVGEQEKEEAISYHSEKLAIAYGVLSLPSGAPIRIFKNLRVCG 798
Query: 314 DCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
DCH+A K IS++ REI+ RD +RFH F+ G CSCGDYW
Sbjct: 799 DCHSASKFISKVTGREIIARDASRFHHFKNGVCSCGDYW 837
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 96/177 (54%), Gaps = 5/177 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++GF ++ V L+ MY KCG ++ AR+VF M R V +WSAMI +G
Sbjct: 386 IHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGC 445
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA +F+ M ++P+ VT+I LL+ACGH+G +D G Y+ + ++ I
Sbjct: 446 GEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGME-IYTQAIKADLVSHIPVGN 504
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++++ + G ++ A NM ++ + V W ++GG +H N A EA D++
Sbjct: 505 ALINMNVKHGSIERARYIFENM-VQRDVVTWNVMIGGYSLHGN---AREALDLFDRM 557
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH +G ++RV LI MY+ CG +EGARRVF +M+ R V +W+ MI+G A +
Sbjct: 285 VHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSN 344
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++A F M E GI+P+ +T+I +++AC + R +S G +
Sbjct: 345 IEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLARE-IHSQVVRAGFGTDLLVDT 403
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V + ++ G +++A + M + + V W A++G
Sbjct: 404 ALVHMYAKCGAIKDARQVFDAMS-RRDVVSWSAMIGA 439
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+V ++ QSG + NI NTLI ++ CG + AR+ F +E +TV TW+A+I G A G
Sbjct: 82 QVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLG 141
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
KEA F +M++ ++P+ +TF+ +L AC + G+ F++ + G +
Sbjct: 142 HVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKE-FHAQVIKVGFVSDFRIG 200
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V + + G + A + + K + + ++GG
Sbjct: 201 TALVSMYVKGGSMDGARQVFDGL-YKRDVSTFNVMIGG 237
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 82/166 (49%), Gaps = 2/166 (1%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H + GF + R+ L+ MYVK G ++GAR+VF + +R V T++ MI G A G
Sbjct: 185 HAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDG 244
Query: 63 KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC 122
++A F +M + G KPN ++F+ +L C + G+ ++ G++ +
Sbjct: 245 EKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKA-VHAQCMNTGLVDDVRVATA 303
Query: 123 MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++ + G ++ A M ++ + V W ++ G + NI+ A
Sbjct: 304 LIRMYMGCGSIEGARRVFDKMKVR-DVVSWTVMIRGYAENSNIEDA 348
>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
Length = 657
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 237/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + G + V + L+ MY +CG L+ +RVF M +R V +W+++I +HG
Sbjct: 307 IHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGY 366
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++A+ F +M+ G P VTF+ +L AC H G V+EG+R F SM ++GI PQ+EHY
Sbjct: 367 GRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYA 426
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RA L EA + +++M +P VWG+LLG CR+H N++LAE ASR+L L+P
Sbjct: 427 CMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPK 486
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V+L++IYAEA+ W++V RV+KL+ + G++K PG + V ++ FV+ DE +P
Sbjct: 487 NAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSMDEFNPL 546
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E+I KL + MK KGYIP T VL ++E +EKE+ + HSEKLAL FGL+NT G
Sbjct: 547 MEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGE 606
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLR+CEDCH K IS+ + +EI+VRD NRFH F+ G CSCGDYW
Sbjct: 607 PIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 8/175 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G+ ++ + TL+DMY + GC++ A VF M R V +WSAMI A +G+
Sbjct: 204 IHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGK 263
Query: 62 AKEALTSFNKMI--EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
A EAL +F +M+ PN VT + +L AC + +++G R + G+ +
Sbjct: 264 AFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQG-RLIHGYILRRGLDSILPV 322
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEE 170
+V + R G L M + + V W +L+ VH K I + EE
Sbjct: 323 ISALVTMYGRCGKLDVGQRVFDRMHDR-DVVSWNSLISSYGVHGYGRKAIQIFEE 376
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 6/161 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH + +G ++ + LI MY G ++ AR+VF + +RT++ W+A+ + L + G
Sbjct: 98 RVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAG 157
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHAC----GHMGWVDEGRRFFYSMTTEYGIIPQ 116
+E L + KM IG++ + T+ +L AC + +G+ ++ T G
Sbjct: 158 HGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKE-IHAHLTRRGYNSH 216
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
+ +VD+ +R G + A MP++ N V W A++
Sbjct: 217 VYIMTTLVDMYARFGCVDYASYVFNGMPVR-NVVSWSAMIA 256
>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Vitis vinifera]
Length = 594
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 231/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+V S ++G NI V ++LIDMY KCG +E A VF +EE+ V W+A++ G + H
Sbjct: 243 QVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHV 302
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++ EA+ F KM ++GI PN +T+I +L AC H+G V++GR++F M + + P + HY
Sbjct: 303 RSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHY 362
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVD+L RAG L EA +FI MP +WG+LL CR+++N++LAE A++ L +++P
Sbjct: 363 SCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEP 422
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G HV+LSNIYA +RWE+VAR R L++ KK G S I + VH F+ G+ HP
Sbjct: 423 HNAGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHP 482
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ E L+ MK GY T L D+EE K++ L HSEKLALTFG+M P G
Sbjct: 483 RIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHG 542
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRIMKNLR+C DCH+ KL S I REI+VRD NRFH F+ G CSCG++W
Sbjct: 543 APIRIMKNLRICGDCHSFMKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 594
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 87/162 (53%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ ++ N+ V L+D+Y KCG ++ A VF M ER+ TWS+M+ G +
Sbjct: 142 QLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNE 201
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F++ +G++ N T L AC + EG++ +++ + GI I
Sbjct: 202 LYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQ-VQAVSCKTGIGSNIFVI 260
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++ G ++EAY ++ K N V+W A+L G H
Sbjct: 261 SSLIDMYAKCGIIEEAYTVFSSVEEK-NVVLWNAILSGFSRH 301
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 75/149 (50%), Gaps = 2/149 (1%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G R + N L++MY KCG +E AR++F EM R++ +W+ M+ +G ++AL F
Sbjct: 50 GLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLF 109
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+M + G + T ++ AC V E ++ + + + + ++D+ ++
Sbjct: 110 MQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQ-LHGFALKTALDSNVFVGTALLDVYAK 168
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
G +++A MP + + V W +++ G
Sbjct: 169 CGLVKDANLVFECMPERSD-VTWSSMVAG 196
>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 649
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 163/351 (46%), Positives = 238/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + G + V + LI MY +CG LE + +F M ++ V W+++I +HG
Sbjct: 299 IHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGY 358
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++A+ F +MI+ G P+ ++FI +L AC H G V+EG++ F SM E+GI P +EHY
Sbjct: 359 GRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYA 418
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RA L EA + I ++ I+P VWG+LLG CR+H +++LAE AS++L +L+P
Sbjct: 419 CMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFKLEPT 478
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V+L++IYAEAE W++V RV+KL+ + ++K PG S I V ++ F + DE +PQ
Sbjct: 479 NAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRKIYSFTSVDEFNPQ 538
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E++ + L + MK +GY P T +VL D++++EKE+ + HSEKLA+ FGL+NT G
Sbjct: 539 GEQLHALLVNLSNEMKQRGYTPQTKLVLYDLDQEEKERIVLGHSEKLAVAFGLINTSKGD 598
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI KNLR+CEDCH+ K IS+ +REI+VRD NRFH F+ G CSCGDYW
Sbjct: 599 TIRITKNLRLCEDCHSVTKFISKFADREIMVRDLNRFHHFKDGVCSCGDYW 649
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 8/175 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G+ ++ V TL+DMY + GC+ A VF EM + V +WSAMI A +G+
Sbjct: 196 IHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGK 255
Query: 62 AKEALTSFNKMI--EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
EAL F +M+ PN VT + +L AC +++G + ++ G+ +
Sbjct: 256 PYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQG-KLIHAYILRRGLDSILPV 314
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEE 170
++ + +R G L E+ + I + K + V+W +L+ +H K I + EE
Sbjct: 315 ISALITMYARCGKL-ESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEE 368
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 82/160 (51%), Gaps = 6/160 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+ GF ++ + LI+M+ + ++ AR+VF + +RT++ W+A+ + LA+ G+
Sbjct: 91 VHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGR 150
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGH----MGWVDEGRRFFYSMTTEYGIIPQI 117
+ L + +M +G+ + T+ LL AC + ++ +G+ ++ +G +
Sbjct: 151 GNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKE-IHAHILRHGYGAHV 209
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
++D+ +R G + A MP+K N V W A++
Sbjct: 210 HVMTTLMDMYARFGCVSYASAVFDEMPVK-NVVSWSAMIA 248
>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 840
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 168/354 (47%), Positives = 237/354 (66%), Gaps = 2/354 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + +S + + N+LIDMY KCG L +RR+F M ERTV +W+AM+ G + HG
Sbjct: 487 QVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHG 546
Query: 61 QAKEALTSFNKMIE-IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTT-EYGIIPQIE 118
+ +E L F M E +KP+ VT + +L C H G D+G F M++ + + P++E
Sbjct: 547 EGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKME 606
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
HYGC+VDLL R+G ++EA+EFI+ MP +P +WG+LLG CRVH N+D+ E A +QL ++
Sbjct: 607 HYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSNVDIGEFAGQQLLEI 666
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
+P N G +V+LSN+YA A RWEDV+ +R LM V K PG SSI +D V+H F A D +
Sbjct: 667 EPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSSIELDQVLHTFHASDRS 726
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
HP+ E+I ++L K GY+P+ S VL D++E++KEK L HSEKLAL+FGL+ +P
Sbjct: 727 HPRREEICMKVKELSTSFKEVGYVPDLSCVLHDVDEEQKEKILLGHSEKLALSFGLIASP 786
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR++KNLR+C DCH K IS++ RE+ +RD+NRFH G CSC DYW
Sbjct: 787 ASVPIRVIKNLRICVDCHNFAKYISKVYGREVSLRDKNRFHRIVGGKCSCEDYW 840
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + ++ V ++L+DMY K G + AR VF + ER V + +A+I G A G
Sbjct: 386 QIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLG 445
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F ++ G+K N VT+ G+L A + +D G++ ++ I +
Sbjct: 446 LDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQ-VHNHVLRSEIPSFVVLQ 504
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ S+ G L + M + + W A+L G H
Sbjct: 505 NSLIDMYSKCGNLTYSRRIFDTM-YERTVISWNAMLVGYSKH 545
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 28/193 (14%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH + ++ + ++ + LI +Y KC L A VF EM ER V +W+AMI + G
Sbjct: 264 RVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRG 323
Query: 61 QAKEALTSFNKMIEIGI---------------------KPNGVTFIGLLHAC-GHMGWVD 98
A +AL F ++I + +PN TF +L +C +G++
Sbjct: 324 YASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLGFI- 382
Query: 99 EGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
GR+ +S+ + + ++D+ ++ G + EA +P + + V A++ G
Sbjct: 383 LGRQ-IHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPER-DVVSCTAIISG 440
Query: 159 CRVHKNIDLAEEA 171
+ + L EEA
Sbjct: 441 ---YAQLGLDEEA 450
>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Vitis vinifera]
Length = 540
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 171/351 (48%), Positives = 233/351 (66%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y ++ G + ++ + L+ MY KCG L+ A +VF M ER V TWS MI G AIHG
Sbjct: 190 VHSYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGH 249
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL F+ M I PN VTF +L A H G V++G + F +M TEY I PQI+HYG
Sbjct: 250 DEKALQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYG 309
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL RAG + A++FI+ MPI+PN V+W LLG C+ H L E SR++ +LDP
Sbjct: 310 CMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKGLGEHISRKILKLDPS 369
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ +V +SN+YA RW V +VR LM+ KK GWSSI ++ +VH+F+ G+E+HP+
Sbjct: 370 SPENYVFVSNVYASLGRWSSVCQVRSLMKEKAPKKQHGWSSIEINFMVHKFIMGEESHPK 429
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
EKI+ M ++ +K G++ +T VL DI+E+EKE L HSE+LA+ +GL++TP G+
Sbjct: 430 REKIYGMLHQMARKLKQVGHVASTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGS 489
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLR C DCH KLISE+ NREI++RDR FH F+ CSC DYW
Sbjct: 490 PIRIVKNLRACRDCHEVIKLISEVYNREIILRDRVCFHHFRERGCSCNDYW 540
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 2/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++G + N LI +Y CGC++ A +F EM E +WS M+ G + +GQ
Sbjct: 89 LHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYSQNGQ 148
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A E L +M + + T ++ CG +G +D G ++ +S + G+ +
Sbjct: 149 AVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLG-KWVHSYIDKEGVKIDVVLGT 207
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+V + S+ G L A + + M + + W ++ G +H
Sbjct: 208 ALVGMYSKCGSLDNALKVFQGMAER-DVTTWSIMIAGYAIH 247
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH 93
A +F +F W+ +I+G +I A+ + M GI PN TF +L+AC
Sbjct: 20 AHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVLNACCK 79
Query: 94 MGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWG 153
+ + EG+ +S + G+ + ++ L + G + A MP +P+ W
Sbjct: 80 LLRLCEGQE-LHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMP-EPDSASWS 137
Query: 154 ALLGG 158
++ G
Sbjct: 138 TMVSG 142
>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
Length = 694
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 167/351 (47%), Positives = 240/351 (68%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
++EY +S +R ++ + + LIDM+ KCG +EGAR VF +R V WSAMI G +HG+
Sbjct: 345 MYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGR 404
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+EA++ + M G+ PN VTF+GLL AC H G V EG +F+++ ++ I PQ +HY
Sbjct: 405 AREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGW-WFFNLMADHKINPQQQHYA 463
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C++DLL RAG L +AYE I+ MP++P VWGALL C+ H++++L E A++QL +DP
Sbjct: 464 CVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPS 523
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G++V LSN+YA A W+ VA VR M+ G+ K G S + V G + F GD++HP+
Sbjct: 524 NTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPR 583
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E+I + E + +K G++ N L D+ ++E E+ L HSE++A+ +GL++TP GT
Sbjct: 584 YEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGT 643
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P+RI KNLR C +CHAA KLIS++V+REIVVRD NRFH F+ G CSCGDYW
Sbjct: 644 PLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 79/144 (54%), Gaps = 4/144 (2%)
Query: 20 TLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP 79
+L MY KCG + A+ +F +M+ + W+AMI G A +G A+EA+ F++MI ++P
Sbjct: 262 SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRP 321
Query: 80 NGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
+ ++ + AC +G +++ R + Y ++Y + ++D+ ++ G ++ A
Sbjct: 322 DTISITSAISACAQVGSLEQARSMYEYVGRSDYR--DDVFISSALIDMFAKCGSVEGA-R 378
Query: 139 FIRNMPIKPNGVVWGALLGGCRVH 162
+ + + + VVW A++ G +H
Sbjct: 379 LVFDRTLDRDVVVWSAMIVGYGLH 402
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 83/159 (52%), Gaps = 4/159 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIH 59
VH + GF ++ V N LI +Y KC L AR VF + + ERT+ +W+A++ A +
Sbjct: 141 VHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQN 200
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G+ EAL F+ M ++ +KP+ V + +L+A + + +GR S+ + G+ + +
Sbjct: 201 GEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASV-VKMGLEIEPDL 259
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ + ++ G + A M PN ++W A++ G
Sbjct: 260 LISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAMISG 297
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 7/151 (4%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
SGF + LI G + AR+VF ++ +F W+A+I+G + + ++AL
Sbjct: 52 SGF-----LITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLM 106
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
++ M + P+ TF LL AC + + G RF ++ G + ++ L +
Sbjct: 107 YSNMQLARVSPDSFTFPHLLKACSGLSHLQMG-RFVHAQVFRLGFDADVFVQNGLIALYA 165
Query: 129 RAGFLQEAYEFIRNMPIKPNGVV-WGALLGG 158
+ L A +P+ +V W A++
Sbjct: 166 KCRRLGSARTVFEGLPLPERTIVSWTAIVSA 196
>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 163/352 (46%), Positives = 241/352 (68%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y ++G+ + V N L+D+YVKCG L AR +F + + + +W+ MI G +HG
Sbjct: 454 IHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGY 513
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ +FN+M + GI+P+ V+FI +L+AC H G +++G RFFY M ++ I P++EHY
Sbjct: 514 GNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYA 573
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLLSR G L +AYEFI +PI P+ +WGALL GCR + +I+LAE+ + ++ +L+P
Sbjct: 574 CMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPE 633
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAG-DETHP 240
N+GY+V+L+NIYAEAE+WE+V R+R+ + G++K PG S I + G V+ FV+G + +HP
Sbjct: 634 NSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHP 693
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++ I + +K+ MK +G+ P T L++ +E +KE L HSEKLA+ FGL+ PP
Sbjct: 694 HSKNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPR 753
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR+ KNLRVC DCH K +S+ REIV+RD NRFH F+ G CSC +W
Sbjct: 754 KTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDPNRFHHFKDGYCSCRGFW 805
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + +S F R I NTL+DMY KCG L+GA RVF +M ER V +W++MI G G+
Sbjct: 273 VHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGR 332
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ A+ +M + G+K + V +LHAC G +D G+ + + +
Sbjct: 333 SDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKD-VHDYIKANNMESNLFVCN 391
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
++D+ ++ G ++ A M +K + + W ++G
Sbjct: 392 ALMDMYAKCGSMEAANSVFSTMVVK-DIISWNTMIG 426
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 76/157 (48%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V EY+ F+ +I + +++ ++ E A +F ++ +R V +W++MI G +G
Sbjct: 172 VSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGL 231
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ L + +M+ +GI + T I +L C + G + G+ +S+ + +I
Sbjct: 232 TERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKA-VHSLAIKSSFERRINFSN 290
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ S+ G L A M + N V W +++ G
Sbjct: 291 TLLDMYSKCGDLDGALRVFEKMG-ERNVVSWTSMIAG 326
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
L+ Y CG L+ RRVF ME++ V+ W+ M+ A G KE++ F M+E GI+
Sbjct: 140 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIE 197
>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Glycine max]
Length = 785
Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 164/340 (48%), Positives = 229/340 (67%), Gaps = 1/340 (0%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEM-EERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
++ V N LI MY + G ++ AR++F + R TW++MI LA HG EA+ F KM
Sbjct: 446 SVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKM 505
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ I +KP+ +T++G+L AC H+G V++G+ +F M + I P HY CM+DLL RAG
Sbjct: 506 LRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGL 565
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNI 192
L+EAY FIRNMPI+P+ V WG+LL CRVHK +DLA+ A+ +L +DP N+G ++ L+N
Sbjct: 566 LEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANT 625
Query: 193 YAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKL 252
+ +WED A+VRK M++ VKK G+S + + VH F D HPQ + I+ M K+
Sbjct: 626 LSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKI 685
Query: 253 LDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVC 312
+K G+IP+T+ VL D+E++ KE+ L HSEKLA+ F L+NTP T +RIMKNLRVC
Sbjct: 686 WKEIKKMGFIPDTNSVLHDLEQEVKEQILRHHSEKLAIAFALINTPKHTTVRIMKNLRVC 745
Query: 313 EDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
DCH+A + IS +V REI+VRD RFH F+ GSCSC DYW
Sbjct: 746 NDCHSAIRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW 785
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 73/149 (48%), Gaps = 1/149 (0%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N+ +L+D Y K G ++ AR +F ++ R V W+AMI G A +G +AL F MI
Sbjct: 345 NVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMI 404
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
G KPN T +L + +D G++ +++ + + ++ + SR+G +
Sbjct: 405 REGPKPNNYTLAAVLSVISSLASLDHGKQ-LHAVAIRLEEVSSVSVGNALITMYSRSGSI 463
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++A + ++ + + W +++ H
Sbjct: 464 KDARKIFNHICSYRDTLTWTSMILSLAQH 492
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NT++ + K G L+ ARRVF E+ + +W+ MI G G K A+ +F +M+ GI
Sbjct: 83 NTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGIS 142
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRF--FYSMTTEYGIIP 115
P TF +L +C +D G++ F + G++P
Sbjct: 143 PTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVP 181
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 92/235 (39%), Gaps = 25/235 (10%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + G + V N+L++MY KCG A+ VF M + TW+ MI
Sbjct: 166 KVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFC 225
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q AL F++M + P+ V++ ++ H G+ F M + P
Sbjct: 226 QFDLALALFDQMTD----PDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTL 281
Query: 121 GCMVDLLSRAGFL---QEAYEFIRNMPIKPNGVVWGALL------GGCRV-HKNIDLAEE 170
G ++ + L ++ + I + G V AL+ G V H+ +++
Sbjct: 282 GSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGT 341
Query: 171 ASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITV 225
S + L +GY + D+ R + +L + W+++ V
Sbjct: 342 PSLNVIAFTSLLDGYF-----------KIGDIDPARAIFDSLKHRDVVAWTAMIV 385
>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
Length = 694
Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 238/351 (67%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
++EY +S +R ++ + + LIDM+ KCG +EGAR VF +R V WSAMI G +HG+
Sbjct: 345 MYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGR 404
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+EA++ + M G+ PN VTF+GLL AC H G V EG FF M ++ I PQ +HY
Sbjct: 405 AREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMA-DHKINPQQQHYA 463
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C++DLL RAG L +AYE I+ MP++P VWGALL C+ H++++L E A++QL +DP
Sbjct: 464 CVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPS 523
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G++V LSN+YA A W+ VA VR M+ G+ K G S + V G + F GD++HP+
Sbjct: 524 NTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPR 583
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E+I + E + +K G++ N L D+ ++E E+ L HSE++A+ +GL++TP GT
Sbjct: 584 YEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGT 643
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P+RI KNLR C +CHAA KLIS++V+REIVVRD NRFH F+ G CSCGDYW
Sbjct: 644 PLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 79/144 (54%), Gaps = 4/144 (2%)
Query: 20 TLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP 79
+L MY KCG + A+ +F +M+ + W+AMI G A +G A+EA+ F++MI ++P
Sbjct: 262 SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRP 321
Query: 80 NGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
+ ++ + AC +G +++ R + Y ++Y + ++D+ ++ G ++ A
Sbjct: 322 DTISITSAISACAQVGSLEQARSMYEYVGRSDYR--DDVFISSALIDMFAKCGSVEGA-R 378
Query: 139 FIRNMPIKPNGVVWGALLGGCRVH 162
+ + + + VVW A++ G +H
Sbjct: 379 LVFDRTLDRDVVVWSAMIVGYGLH 402
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 84/159 (52%), Gaps = 4/159 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIH 59
VH + GF ++ V N LI +Y KC L AR VF + + ERT+ +W+A++ A +
Sbjct: 141 VHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQN 200
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G+ EAL F++M ++ +KP+ V + +L+A + + +GR S+ + G+ + +
Sbjct: 201 GEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASV-VKMGLEIEPDL 259
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ + ++ G + A M PN ++W A++ G
Sbjct: 260 LISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAMISG 297
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 7/151 (4%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
SGF + LI G + AR+VF ++ +F W+A+I+G + + ++AL
Sbjct: 52 SGF-----LITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLM 106
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
++ M + P+ TF LL AC + + G RF ++ G + ++ L +
Sbjct: 107 YSNMQLARVSPDSFTFPHLLKACSGLSHLQMG-RFVHAQVFRLGFDADVFVQNGLIALYA 165
Query: 129 RAGFLQEAYEFIRNMPIKPNGVV-WGALLGG 158
+ L A +P+ +V W A++
Sbjct: 166 KCRRLGSARTVFEGLPLPERTIVSWTAIVSA 196
>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
Length = 797
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 230/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G+ ++ N LI MY +CG ++ A +FI M +W+AMI L HG
Sbjct: 446 QLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHG 505
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q +A+ F +M++ GI P+ ++F+ ++ AC H G V EGR++F SM YG+ P EHY
Sbjct: 506 QGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHY 565
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
++DLL RAG EA E + +MP +P +W ALL GCR+H NIDL EA+ +L +L P
Sbjct: 566 ARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELKP 625
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++G +V+LSN+YA A +W D+A+VRKLMR+ GVKK PG S I V+ VH F+ GD HP
Sbjct: 626 QHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVGDANHP 685
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ E+L+ M+ GY+P+T VL D+E KE L HSEKLA+ +G M P G
Sbjct: 686 EVRQIYNYLEQLVLEMRKIGYVPDTKCVLHDVESDLKEHELSTHSEKLAVAYGFMKLPHG 745
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+R+ KNLR+C DCH AFK +S++V REIVVRD RFH F+ G CSCGDYW
Sbjct: 746 ATVRVFKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 797
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 6/166 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ N ++ YV C++ A+ F EM E+ + +W MI GLA G A+EAL FN+M
Sbjct: 357 RDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRM 416
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
G +P F G + +C +G + GR+ ++ YG + ++ + +R G
Sbjct: 417 KLQGFEPCDYAFAGAIISCSVLGSLKHGRQ-LHAQVVRYGYESSLSAGNALITMYARCGV 475
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASRQ 174
+ A+ NMP + + W A++ H + I+L EE ++
Sbjct: 476 VDAAHCLFINMPC-VDAISWNAMIAALGQHGQGTQAIELFEEMLKE 520
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 7/167 (4%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
T+I YVK L+ A+ ++ W+AMI G A G EA F KMI I+
Sbjct: 227 TTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQ 286
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEH--YGCMVDLLSRAGFLQE 135
+ TF ++ C + G G+ Y + T P + ++ + G +
Sbjct: 287 LDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDI 346
Query: 136 AYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182
A E MP + + V W +L G + N+ +EA +++ N
Sbjct: 347 AQEIFNKMPER-DLVSWNIILSG---YVNVRCMDEAKSFFNEMPEKN 389
>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 783
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 168/351 (47%), Positives = 224/351 (63%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH NI V L+DMY KCG + A ++F M E+ TW+ MI G +HG
Sbjct: 433 VHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGY 492
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL +N+M+ +G P+ VTF+ +L+AC H G V EG F++M +Y I P IEHY
Sbjct: 493 GHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYA 552
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+L R+G L++A EFI+ MP++P VWG LLG C +HK+ D+A AS +L +LDP
Sbjct: 553 CMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDPG 612
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ GY+V+LSNIY+ + A +R++++ + K+PG + I V+G H FV+GD +H
Sbjct: 613 SVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSHSH 672
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A I+ EKL M+ GY T L D+EE+EKE + HSEKLA+ FGL+ T PG
Sbjct: 673 ATDIYAKLEKLTGKMREMGYQAETVPALHDVEEEEKELAVNVHSEKLAIAFGLITTEPGN 732
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC DCH A K IS+I R IVVRD NRFH F+ G CSCGDYW
Sbjct: 733 EIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 783
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 2/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + +SG N V +Y K ++ AR +F E E+TV W+AMI G +G
Sbjct: 332 IHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGS 391
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ A++ F +M++ PN VT +L AC +G + G+ + + +E + P I
Sbjct: 392 TETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSE-NLEPNIYVST 450
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ ++ G + EA++ +M K N V W ++ G +H
Sbjct: 451 ALVDMYAKCGNISEAWQLFDSMSEK-NTVTWNTMIFGYGLH 490
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 81/175 (46%), Gaps = 4/175 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +S G+ N+ V + L+D+Y K + AR+VF M ER W+ MI GL +
Sbjct: 130 LHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCC 189
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF-FYSMTTEYGIIPQIEHY 120
+++ F +M+ G++ + T +L A + + G ++ +G +
Sbjct: 190 FDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYV--L 247
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
++ L S+ G + A R + +P+ + + A++ G + + + + R+L
Sbjct: 248 TGLISLYSKCGDVNTARLLFRRIN-RPDLIAYNAMISGFTANGGTECSVKLFREL 301
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 49/242 (20%), Positives = 98/242 (40%), Gaps = 39/242 (16%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V LI +Y KCG + AR +F + + ++AMI G +G + ++ F +++ G
Sbjct: 246 VLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSG 305
Query: 77 IKPNGVTFIGL--LH--------ACGHMGW-VDEGRRFFYSMTTEYGII----------- 114
+ + T +GL LH AC G+ V G +++T + I
Sbjct: 306 ERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLAR 365
Query: 115 ------PQ--IEHYGCMVDLLSRAGFLQEAYEFIRNM---PIKPNGVVWGALLGGCRVHK 163
P+ + + M+ ++ G + A + M PN V +L C
Sbjct: 366 HLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLG 425
Query: 164 NIDLAEEASRQL--DQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWS 221
++ + + + L+P N L ++YA + +++ +L ++ K T W+
Sbjct: 426 SLSFGKWVHHLIKSENLEP-NIYVSTALVDMYA---KCGNISEAWQLFDSMSEKNTVTWN 481
Query: 222 SI 223
++
Sbjct: 482 TM 483
>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
Length = 787
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 174/352 (49%), Positives = 223/352 (63%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++ N+ V LIDMY KCG + AR +F M+ + V +W+AMI G +HGQ
Sbjct: 436 VHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQ 495
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL + M++ I P TF+ +++AC H G VDEG++ F MT EY I P IEH
Sbjct: 496 GAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCT 555
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGV-VWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG L EA E I P G VWGALLG C VHKN DLA+ AS++L +LD
Sbjct: 556 CMVDLLGRAGKLNEALELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLASQKLFELDS 615
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N GY+V+LSN+Y + + + A VR+ + + KTPG + I + H F+AGD HP
Sbjct: 616 ENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVFMAGDHLHP 675
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q+E I+ E+L M GY P T L D+EE+EKE + HSEKLA+ FGL++T PG
Sbjct: 676 QSEAIYSYLERLTAKMIEAGYQPVTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPG 735
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IRI+KNLRVC DCH A K IS++ R IVVRD +RFH F+ G CSCGDYW
Sbjct: 736 TEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 11/197 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + ++ + V L +Y + +E AR +F M E+T+ +W+AMI G A +G
Sbjct: 335 LHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGL 394
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ A+ F M E+ ++PN +T L AC H+G + G ++ + + ++ + +
Sbjct: 395 TEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLG-KWVHRIISKEKLELNVYVMT 453
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD-- 179
++D+ ++ G + EA M K N V W A++ G +H AE D LD
Sbjct: 454 ALIDMYAKCGSIAEARSIFDRMDNK-NVVSWNAMISGYGLHGQG--AEALKLYKDMLDAR 510
Query: 180 --PLNNGYHVVLSNIYA 194
P ++ + LS IYA
Sbjct: 511 ILPTSSTF---LSVIYA 524
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/302 (18%), Positives = 122/302 (40%), Gaps = 50/302 (16%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y + G + V L+ +Y KCG ++ A+ +F M+ + ++A+I G +++G
Sbjct: 234 VHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGM 293
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGL---------------LHACGHMGWVDEGRRFFYS 106
+ ++ F ++ G +PN T + + LHA +D +
Sbjct: 294 VESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTA 353
Query: 107 MTTEYGII---------------PQIEHYGCMVDLLSRAGFLQEA---YEFIRNMPIKPN 148
+TT Y + +E + M+ ++ G + A ++ ++ + ++PN
Sbjct: 354 LTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPN 413
Query: 149 GVVWGALLGGCRVHKNIDLAEEASRQLDQLD-PLNNGYHVVLSNIYAEAERWEDVARVRK 207
+ + L C + L + R + + LN L ++YA + +A R
Sbjct: 414 PITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYA---KCGSIAEARS 470
Query: 208 LMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSV 267
+ + K W+++ ++G H Q + ++++ +LD L P +S
Sbjct: 471 IFDRMDNKNVVSWNAM---------ISGYGLHGQGAEALKLYKDMLDARIL----PTSST 517
Query: 268 VL 269
L
Sbjct: 518 FL 519
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 15/179 (8%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H S +G+ + V + L +Y K + AR+VF + W+ ++ GL
Sbjct: 136 LHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGL----P 191
Query: 62 AKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGI---IPQI 117
EAL +F +M++ G ++P+ T L A + GR YG+ + +
Sbjct: 192 GSEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGR-----CVHGYGVKCGLAEH 246
Query: 118 EHYGC-MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
EH ++ L S+ G + A +F+ + P+ V + AL+ G V+ ++ + E ++L
Sbjct: 247 EHVVTGLMSLYSKCGDMDSA-QFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKEL 304
>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 615
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 172/352 (48%), Positives = 234/352 (66%), Gaps = 2/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+HEY + ++V LIDMY KCG LE A VF ME R WS MI A H
Sbjct: 265 IHEYVRKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANHSY 324
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA++ F +M + GIKP+ VTF+G+L+AC H G V EG ++F SM E+G++P I+HYG
Sbjct: 325 GREAISLFEEMKKQGIKPDDVTFLGVLYACSHSGLVSEGLQYFDSMR-EFGLVPGIKHYG 383
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+ DLL+R+G L AYEFI +PIKP ++W LL C + DL ++ ++ +LD
Sbjct: 384 CVADLLARSGQLDRAYEFIDELPIKPTAILWRTLLSACGSRGDADLGKQVFERILELDDS 443
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G +V+ SN+ A RWE++ RVRKLM GV K PG SSI VD VHEF AGD HP+
Sbjct: 444 HGGDYVIFSNLCANTGRWEEMNRVRKLMNEKGVVKVPGCSSIEVDNRVHEFFAGDGRHPK 503
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVL-LDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +M + +++ +KL GY+PNTS V +++ E+EK L HSEKLA++FGL+NT PG
Sbjct: 504 SLDARRMVDGVIEQLKLAGYVPNTSHVFHVEMGEEEKAVSLRYHSEKLAISFGLLNTSPG 563
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T +R++KNLRVC DCH+ KL+S + NR I++RD NRFH F+ G CSCGDYW
Sbjct: 564 TTLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 615
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 9/211 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H + + G + V TLI+MY +CG AR +F ++ V +++AMI
Sbjct: 163 QAHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECVVSYNAMITAAVRSS 222
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EAL F +M G+K VT I +L AC +G ++ G R+ + + + ++
Sbjct: 223 RPGEALVLFREMQAKGLKLTSVTLISVLSACALLGALELG-RWIHEYVRKVQLDSLVKVN 281
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASRQ-- 174
++D+ + G L++A + M + + W ++ H + I L EE +Q
Sbjct: 282 TALIDMYGKCGSLEDAISVFQGMESR-DRQAWSVMIVAYANHSYGREAISLFEEMKKQGI 340
Query: 175 -LDQLDPLNNGYHVVLSNIYAEAERWEDVAR 204
D + L Y S + +E ++ D R
Sbjct: 341 KPDDVTFLGVLYACSHSGLVSEGLQYFDSMR 371
>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 635
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 227/352 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SGF N+ V ++ +DMY KCG L + +F E++E+ + W+ +I G A H
Sbjct: 284 QMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHA 343
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ KE + F KM + G+ PN VTF LL CGH G V+EGRRFF M T YG+ P + HY
Sbjct: 344 RPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHY 403
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVD+L RAG L EAYE I+++P P +WG+LL CRV+KN++LAE A+ +L +L+P
Sbjct: 404 SCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEP 463
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G HV+LSNIYA ++WE++A+ RKL+R+ VKK G S I + VH F G+ HP
Sbjct: 464 ENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHP 523
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I + L+ + GY P+ L D+E +KE+ L +HSEKLAL FGLM P
Sbjct: 524 RIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPES 583
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+P+RIMKNLR+C DCH K S R I+VRD NRFH F G CSCGD+W
Sbjct: 584 SPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 105/214 (49%), Gaps = 7/214 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S ++ N+ V L+D+Y KCG ++ A +VF M++++ TWS+M+ G +
Sbjct: 183 KLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNK 242
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL + + + ++ N T ++ AC ++ + EG++ +++ + G +
Sbjct: 243 NYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQ-MHAVICKSGFGSNVFVA 301
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH---KNIDLAEEASRQLDQ 177
VD+ ++ G L+E+Y + K N +W ++ G H K + + E +Q D
Sbjct: 302 SSAVDMYAKCGSLRESYIIFSEVQEK-NLELWNTIISGFAKHARPKEVMILFEKMQQ-DG 359
Query: 178 LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRN 211
+ P + +LS + E+ R KLMR
Sbjct: 360 MHPNEVTFSSLLS-VCGHTGLVEEGRRFFKLMRT 392
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 2/172 (1%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ + N LI+ Y KCG +E AR+VF M ER++ +W+ MI + EAL F +M
Sbjct: 95 DVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMR 154
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
G K + T +L ACG E ++ + ++ + I + ++DL ++ G +
Sbjct: 155 NEGFKFSEFTISSVLSACGVNCDALECKK-LHCLSVKTCIDLNLYVGTALLDLYAKCGMI 213
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGY 185
++A + +M K + V W +++ G +KN + A R+ ++ N +
Sbjct: 214 KDAVQVFESMQDK-SSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQF 264
>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Glycine max]
Length = 634
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 169/354 (47%), Positives = 232/354 (65%), Gaps = 2/354 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + +S + + N+LIDMY KCG L ARR+F + ERTV +W+AM+ G + HG
Sbjct: 281 QVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHG 340
Query: 61 QAKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTT-EYGIIPQIE 118
+ +E L FN MI E +KP+ VT + +L C H G D+G FY MT+ + + P +
Sbjct: 341 EGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSK 400
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
HYGC+VD+L RAG ++ A+EF++ MP +P+ +WG LLG C VH N+D+ E QL Q+
Sbjct: 401 HYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQI 460
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
+P N G +V+LSN+YA A RWEDV +R LM V K PG S I +D V+H F A D +
Sbjct: 461 EPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDCS 520
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
HP+ E++ ++L K GY+P+ S VL D++E++KEK L HSEKLALTFGL+ TP
Sbjct: 521 HPRREEVSAKVQELSARFKEAGYVPDLSCVLHDVDEEQKEKILLSHSEKLALTFGLIATP 580
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR++KNLR+C DCH K S+I RE+ +RD+NRFH G CSCGDYW
Sbjct: 581 ESVPIRVIKNLRICVDCHNFAKYTSKIYGREVSLRDKNRFHRIVGGKCSCGDYW 634
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 7/172 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH + ++ + + + LI YVKC L AR VF M ER V +W+AMI + G
Sbjct: 79 RVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRG 138
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHAC-GHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
A +AL+ F +M+ G +PN TF +L +C G G+V GR+ +S + +
Sbjct: 139 YASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFV-LGRQ-IHSHIIKLNYEAHVYV 196
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
++D+ ++ G + EA + +P + + V A++ G + + L EEA
Sbjct: 197 GSSLLDMYAKDGKIHEARGIFQCLP-ERDVVSCTAIISG---YAQLGLDEEA 244
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 10/166 (6%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + + ++ V ++L+DMY K G + AR +F + ER V + +A+I G A G
Sbjct: 180 QIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLG 239
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRR----FFYSMTTEYGIIPQ 116
+EAL F ++ G++ N VT+ +L A + +D G++ S Y ++
Sbjct: 240 LDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQN 299
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ S+ G L A + + + W A+L G H
Sbjct: 300 -----SLIDMYSKCGNLTYARRIFDTLH-ERTVISWNAMLVGYSKH 339
>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 833
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 165/334 (49%), Positives = 229/334 (68%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N LI M K G +E AR +F M R V TW+AMI G ++HG A+EAL F++M++ +
Sbjct: 500 NALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFR 559
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
PN VTF+G+L AC G+VDEGRRFF + GI+P ++ YGCMVDLL RAG L EA
Sbjct: 560 PNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAEL 619
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAER 198
I++MP+KP +W +LL CR+H N+D+AE A+ + +DP + +V LS++YA A
Sbjct: 620 LIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAGM 679
Query: 199 WEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKL 258
WE+VA+VRK+M + G++K G + I V G VH FV D +HP +I+ +L++ +K
Sbjct: 680 WENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDRSHPLVGEIYAELARLMNAIKR 739
Query: 259 KGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAA 318
+GYIP T VL D+ E++KE+ + HSEKLA+ +G+++ P GTPIRI KNLRVC DCH+A
Sbjct: 740 EGYIPITQNVLHDVGEQQKEEAISYHSEKLAIAYGVLSLPSGTPIRIYKNLRVCSDCHSA 799
Query: 319 FKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
K IS++ REI+ RD +RFH F+ G CSCGDYW
Sbjct: 800 SKFISKVTGREIIARDASRFHHFKDGVCSCGDYW 833
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 98/177 (55%), Gaps = 5/177 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + +GF ++ V L+ MY KCG ++ AR+VF M R V +WSAMI +G
Sbjct: 382 IHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGY 441
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA +F+ M I+P+GVT+I LL+ACGH+G +D G Y+ + ++ +
Sbjct: 442 GTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGME-IYTQAIKADLVSHVPLGN 500
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++ + ++ G ++ A +I + ++ + + W A++GG +H N A EA D++
Sbjct: 501 ALIIMNAKHGSVERA-RYIFDTMVRRDVITWNAMIGGYSLHGN---AREALYLFDRM 553
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH +G +IRV +LI MY CG +EGARRVF M+ R V +W+ MI+G A +G
Sbjct: 281 VHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGN 340
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++A F M E GI+P+ +T++ +++AC ++ R +S G +
Sbjct: 341 IEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHARE-IHSQVDIAGFGTDLLVST 399
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V + ++ G +++A + MP + + V W A++G
Sbjct: 400 ALVHMYAKCGAIKDARQVFDAMP-RRDVVSWSAMIGA 435
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 78/146 (53%), Gaps = 1/146 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+V ++ Q G + NI NTLI +Y CG + AR++F +E +TV TW+A+I G A G
Sbjct: 78 QVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVG 137
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
KEA F +M++ G++P+ +TF+ +L AC ++ G+ + T G +
Sbjct: 138 HVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTA-GFVSDFRIG 196
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIK 146
+V + + G + +A + + I+
Sbjct: 197 TALVSMYVKGGSMDDARQVFDGLHIR 222
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 85/170 (50%), Gaps = 8/170 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH +GF + R+ L+ MYVK G ++ AR+VF + R V T++ M+ G A G
Sbjct: 180 VHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGD 239
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR---RFFYSMTTEYGIIPQIE 118
++A F +M ++G+KPN ++F+ +L C W E + ++ G++ I
Sbjct: 240 WEKAFELFYRMQQVGLKPNKISFLSILDGC----WTPEALAWGKAVHAQCMNAGLVDDIR 295
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++ + + G ++ A NM ++ + V W ++ G + NI+ A
Sbjct: 296 VATSLIRMYTTCGSIEGARRVFDNMKVR-DVVSWTVMIEGYAENGNIEDA 344
>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 573
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 170/353 (48%), Positives = 242/353 (68%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM-EERTVFTWSAMIQGLAIHG 60
VH Y ++ +I + LIDMY KCG LE A+RVF + ++ V +SAMI LA++G
Sbjct: 221 VHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYG 280
Query: 61 QAKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
E F++M I PN VTF+G+L AC H G ++EG+ +F M E+GI P I+H
Sbjct: 281 LTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQH 340
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YGCMVDL R+G ++EA FI +MP++P+ ++WG+LL G R+ +I E A ++L +LD
Sbjct: 341 YGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELD 400
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P+N+G +V+LSN+YA+ RW +V +R M G+ K PG S + V+GVVHEFV GDE+
Sbjct: 401 PMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQ 460
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
++E+I+ M ++++ ++ GY+ +T VLLD+ EK+KE L HSEKLA+ F LM T P
Sbjct: 461 QESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRP 520
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GTP+RI+KNLR+C DCH K+IS++ +REIVVRD NRFH F+ GSCSC D+W
Sbjct: 521 GTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 121/263 (46%), Gaps = 15/263 (5%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+++ N++++ Y K G ++ AR++F EM ER V +WS +I G + G+ KEAL F +M
Sbjct: 126 KDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREM 185
Query: 73 I-----EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
E ++PN T +L ACG +G +++G ++ ++ +Y + I ++D+
Sbjct: 186 QLPKPNEAFVRPNEFTMSTVLSACGRLGALEQG-KWVHAYIDKYHVEIDIVLGTALIDMY 244
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV 187
++ G L+ A + K + + A++ ++ D + ++ D +N
Sbjct: 245 AKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVT 304
Query: 188 VLSNIYAEAERW---EDVARVRKLMRNLGVKKTPGWSSITVD-----GVVHEFVAGDETH 239
+ + A R E + + ++ G+ + VD G++ E + +
Sbjct: 305 FVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASM 364
Query: 240 PQAEKIFQMWEKLLDGMKLKGYI 262
P + +W LL G ++ G I
Sbjct: 365 PMEPDVL-IWGSLLSGSRMLGDI 386
>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
Length = 989
Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 164/352 (46%), Positives = 232/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + GF +I V N LI Y KCG +E ARR F EM E+ +W+AMI G + HG
Sbjct: 638 QIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHG 697
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA+ F KM ++G PN VTF+G+L AC H+G V +G +F SM+ E+G++P+ HY
Sbjct: 698 YGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHY 757
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDL+SRAGFL A +FI MPI+P+ +W LL C VHKN+++ E A++ L +L+P
Sbjct: 758 ACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEP 817
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+LSN+YA + +W+ + R++MRN GVKK PG S I V VH F GD HP
Sbjct: 818 EDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLHP 877
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
A+KI++ +L GY + +L D+E+++K+ +Y HSEKLA+TFGL++
Sbjct: 878 LADKIYEFLAELNKKAAEIGYFQDRYSLLNDVEQEQKDPTVYIHSEKLAITFGLLSLSDT 937
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PI +MKNLRVC+DCH+ K +S+I NR I+VRD RFH F+ G CSC DYW
Sbjct: 938 VPIHVMKNLRVCKDCHSWIKFVSKISNRAIIVRDAYRFHHFEGGICSCKDYW 989
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++GF+ N+ VC+ LIDMY K G L+ A + + E V +W+A+I G A H
Sbjct: 436 QIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHN 495
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL F +M+ GI+ + + F + AC + +++GR+ ++ + G +
Sbjct: 496 LFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQ-IHAQSYVSGYSEDLSIG 554
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V L +R G ++EAY + K + + W L+ G
Sbjct: 555 NALVSLYARCGRIKEAYLEFEKIDAK-DSISWNGLISG 591
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 90/183 (49%), Gaps = 2/183 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S SG+ ++ + N L+ +Y +CG ++ A F +++ + +W+ +I G A G
Sbjct: 537 QIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSG 596
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++AL F +M ++ + TF + A ++ + +G++ ++M + G IE
Sbjct: 597 YCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQ-IHAMIIKRGFDSDIEVS 655
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
++ ++ G +++A MP K N V W A++ G H + A ++ Q+
Sbjct: 656 NALITFYAKCGSIEDARREFCEMPEK-NDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGE 714
Query: 181 LNN 183
+ N
Sbjct: 715 MPN 717
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/320 (20%), Positives = 128/320 (40%), Gaps = 26/320 (8%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y ++G ++ V L+D+YV C ++ A +F+ + V W+ M+
Sbjct: 335 QLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLD 394
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
E+ F +M G+ PN T+ +L C +G +D G + ++ + G Q Y
Sbjct: 395 NLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQ-IHTQVIKTGF--QFNVY 451
Query: 121 GC--MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
C ++D+ ++ G L A+ +R + + + V W AL+ G H +L EA + ++
Sbjct: 452 VCSVLIDMYAKHGKLDTAHVILRTLT-EDDVVSWTALISGYAQH---NLFAEALKHFKEM 507
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAG--- 235
LN G + S+ + A ++ L + + S + D + +
Sbjct: 508 --LNRG---IQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYA 562
Query: 236 -----DETHPQAEKIFQ----MWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSE 286
E + + EKI W L+ G GY + V + + E +
Sbjct: 563 RCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGS 622
Query: 287 KLALTFGLMNTPPGTPIRIM 306
++ + N G I M
Sbjct: 623 AVSAAANIANIKQGKQIHAM 642
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 111/274 (40%), Gaps = 39/274 (14%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G VCN L+ +Y + A +VF +M+ + +++++I GLA G
Sbjct: 234 QLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQG 293
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ AL F KM +KP+ VT LL AC G + +G + +S + GI +
Sbjct: 294 FSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQ-LHSYVIKAGISSDMIVE 352
Query: 121 GCMVDL-------------------------------LSRAGFLQEAYEFIRNMPIK--- 146
G ++DL + L E++ R M IK
Sbjct: 353 GALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLI 412
Query: 147 PNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV-VLSNIYAEAERWEDVARV 205
PN + ++L C +DL E+ Q+ + N Y VL ++YA+ + D A V
Sbjct: 413 PNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKL-DTAHV 471
Query: 206 RKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
++R L W+++ H A H
Sbjct: 472 --ILRTLTEDDVVSWTALISGYAQHNLFAEALKH 503
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF +CN L+D+Y G L+G +VF +M R+V +W +I G + L F
Sbjct: 40 GFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLF 99
Query: 70 NKMIEIGIKPNGVTFIGLLHAC-GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
+ MIE + P ++F +L AC GH + + ++ +G++ ++ L +
Sbjct: 100 SCMIEENVSPTEISFASVLRACSGHRIGIRYAEQ-IHARIICHGLLCSPIISNPLIGLYA 158
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ G + A + N+ K + V W A++ G
Sbjct: 159 KNGLIISARKVFDNLCTK-DSVSWVAMISG 187
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 6/144 (4%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
+ N LI +Y K G + AR+VF + + +W AMI G + +G +EA+ F +M G
Sbjct: 149 ISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAG 208
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC--MVDLLSRAGFLQ 134
I P F +L C + D G + +++ +YG +E Y C +V L SR
Sbjct: 209 IFPTPYVFSSVLSGCTKIKLFDVGEQ-LHALVFKYG--SSLETYVCNALVTLYSRMPNFV 265
Query: 135 EAYEFIRNMPIKPNGVVWGALLGG 158
A + M K + V + +L+ G
Sbjct: 266 SAEKVFSKMQSK-DEVSFNSLISG 288
>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Glycine max]
Length = 727
Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 171/349 (48%), Positives = 237/349 (67%), Gaps = 1/349 (0%)
Query: 4 EYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAK 63
+Y ++S + +I V +LIDMY KCG +E ARRVF ++ V WSAMI G +HGQ
Sbjct: 380 DYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGW 439
Query: 64 EALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCM 123
EA+ ++ M + G+ PN VTFIGLL AC H G V EG F+ M ++ I+P+ EHY C+
Sbjct: 440 EAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCMK-DFEIVPRNEHYSCV 498
Query: 124 VDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183
VDLL RAG+L EA FI +PI+P VWGALL C++++ + L E A+ +L LDP N
Sbjct: 499 VDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYNT 558
Query: 184 GYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAE 243
G++V LSN+YA + W+ VA VR LMR G+ K G+S I ++G + F GD++HP A+
Sbjct: 559 GHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAK 618
Query: 244 KIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPI 303
+IF ++L +K G++P T VL D+ +EKE+ L HSE++A+ +GL++T PGT +
Sbjct: 619 EIFDELQRLERRLKEVGFVPYTESVLHDLNYEEKEENLSFHSERIAVAYGLISTAPGTTL 678
Query: 304 RIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
RI KNLR C +CH+A KLIS++V REI+VRD NRFH F+ G CSCGDYW
Sbjct: 679 RITKNLRACVNCHSAIKLISKLVEREIIVRDANRFHHFKDGLCSCGDYW 727
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + GF ++ V N L+ +Y KCG + A+ VF + RT+ +W+++I G A +G+
Sbjct: 176 IHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGK 235
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A EAL F++M G+KP+ + + +L A + +++GR + + G+ +
Sbjct: 236 AVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRS-IHGFVIKMGLEDEPALLI 294
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ ++ G + A F M N ++W A++ G
Sbjct: 295 SLTAFYAKCGLVTVAKSFFDQMK-TTNVIMWNAMISG 330
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G + +L Y KCG + A+ F +M+ V W+AMI G A +G
Sbjct: 277 IHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGH 336
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMG------WVDEGRRFFYSMTTEYGIIP 115
A+EA+ F+ MI IKP+ VT + A +G W+D+ Y + YG
Sbjct: 337 AEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDD-----YVSKSNYG--S 389
Query: 116 QIEHYGCMVDLLSRAGFLQEAYE-FIRNMPIKPNGVVWGALLGGCRVH 162
I ++D+ ++ G ++ A F RN + V+W A++ G +H
Sbjct: 390 DIFVNTSLIDMYAKCGSVEFARRVFDRNS--DKDVVMWSAMIMGYGLH 435
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 94/226 (41%), Gaps = 15/226 (6%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H SG + N + L++ G + AR++F E VF W+A+I+ + +
Sbjct: 74 QIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNN 133
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRR-FFYSMTTEYGIIPQIEH 119
++ + + M G+ P+G TF +L AC + +D G + +YG +
Sbjct: 134 MYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTEL--LDFGLSCIIHGQIIKYGFGSDVFV 191
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
+V L ++ G + A + + + V W +++ G + A EA R Q+
Sbjct: 192 QNGLVALYAKCGHIGVA-KVVFDGLYHRTIVSWTSIISG---YAQNGKAVEALRMFSQMR 247
Query: 180 PLNNGYH------VVLSNIYAEAERWEDVARVRKLMRNLGVKKTPG 219
NNG V + Y + + E + + +G++ P
Sbjct: 248 --NNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPA 291
>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 163/352 (46%), Positives = 241/352 (68%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y ++G+ + V N L+D+YVKCG L AR +F + + + +W+ MI G +HG
Sbjct: 454 IHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGY 513
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ +FN+M + GI+P+ V+FI +L+AC H G +++G RFFY M ++ I P++EHY
Sbjct: 514 GNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYA 573
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLLSR G L +AY+FI +PI P+ +WGALL GCR++ +I+LAE+ + ++ +L+P
Sbjct: 574 CMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPE 633
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAG-DETHP 240
N GY+V+L+NIYAEAE+ E+V R+R+ + G++K PG S I + G V+ FV+G + +HP
Sbjct: 634 NTGYYVLLANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHP 693
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++KI + +K+ MK +GY P T L++ +E +KE L HSEKLA+ FGL+ PP
Sbjct: 694 HSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPR 753
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR+ KNLRVC DCH K +S+ REIV+RD NRFH F+ G CSC +W
Sbjct: 754 KTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 805
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + +S F R I NTL+DMY KCG L+GA RVF +M ER V +W++MI G G
Sbjct: 273 VHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGW 332
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ A+ +M + G+K + V +LHAC G +D G+ + + +
Sbjct: 333 SDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKD-VHDYIKANNMASNLFVCN 391
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
++D+ ++ G ++ A M +K + + W ++G
Sbjct: 392 ALMDMYAKCGSMEGANSVFSTMVVK-DIISWNTMVG 426
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 76/157 (48%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V EY+ F+ +I + +++ ++ E A +F ++ +R V +W++MI G +G
Sbjct: 172 VSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGL 231
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ L + +M+ +GI + T I +L C + G + G+ +S+ + +I
Sbjct: 232 TERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKA-VHSLAIKSSFERRINFSN 290
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ S+ G L A M + N V W +++ G
Sbjct: 291 TLLDMYSKCGDLDGALRVFEKMG-ERNVVSWTSMIAG 326
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
L+ Y CG L+ RRVF ME++ V+ W+ M+ A G KE++ F M+E GI+
Sbjct: 140 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIE 197
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 169/352 (48%), Positives = 244/352 (69%), Gaps = 6/352 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+ +N S R +LIDMY KCG +E A +VF + +++ +W+AMI G A+HG
Sbjct: 396 RLKGVTNASSLR------TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHG 449
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A + F++M +IGI+P+ +TF+GLL AC H G +D GR F +MT +Y + P++EHY
Sbjct: 450 RADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHY 509
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCM+DLL +G +EA E I M ++P+GV+W +LL C++H N++L E + L +++P
Sbjct: 510 GCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEP 569
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +V+LSNIYA A RW +VA+ R L+ + G+KK PG SSI +D VVHEF+ GD+ HP
Sbjct: 570 ENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHP 629
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ M E++ ++ G++P+TS VL ++EE+ KE L HSEKLA+ FGL++T PG
Sbjct: 630 RNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPG 689
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T + I+KNLRVC +CH A KLIS+I REI+ RDR RFH F+ G CSC DYW
Sbjct: 690 TKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 86/167 (51%), Gaps = 2/167 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + GF N+++ N LID+Y KCG LE A +F + + V +W+ +I G
Sbjct: 287 QVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMN 346
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY-GIIPQIEH 119
KEAL F +M+ G PN VT + +L AC H+G +D GR + G+
Sbjct: 347 LYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSL 406
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNID 166
++D+ ++ G ++ A++ + N + + W A++ G +H D
Sbjct: 407 RTSLIDMYAKCGDIEAAHQ-VFNSILHKSLSSWNAMIFGFAMHGRAD 452
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 85/159 (53%), Gaps = 5/159 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ LI Y G +E A+++F E+ + V +W+AMI G A G KEAL F M
Sbjct: 198 RDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDM 257
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
++ ++P+ T + ++ AC G ++ GR+ + ++G ++ ++DL S+ G
Sbjct: 258 MKTNVRPDESTMVTVVSACAQSGSIELGRQ-VHLWIDDHGFGSNLKIVNALIDLYSKCGE 316
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
L+ A +P K + + W L+GG + +++L +EA
Sbjct: 317 LETACGLFERLPYK-DVISWNTLIGG---YTHMNLYKEA 351
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 96/219 (43%), Gaps = 12/219 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEG---ARRVFIEMEERTVFTWSAMIQGLAI 58
+H + G + LI+ + EG A VF ++E + W+ M +G A+
Sbjct: 52 IHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHAL 111
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
AL + MI +G+ PN TF +L +C EG++ + + G +
Sbjct: 112 SSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQ-IHGHVLKLGCDLDLY 170
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ ++ + + G L++A++ P + + V + AL+ G I E A + D++
Sbjct: 171 VHTSLISMYVQNGRLEDAHKVFDKSPHR-DVVSYTALIKGYASRGYI---ENAQKLFDEI 226
Query: 179 DPLNN--GYHVVLSNIYAEAERWEDVARVRKLMRNLGVK 215
P+ + ++ ++S YAE +++ + K M V+
Sbjct: 227 -PVKDVVSWNAMISG-YAETGNYKEALELFKDMMKTNVR 263
>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
Length = 679
Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 177/352 (50%), Positives = 235/352 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H Y + +GF+ N+ + L+DMY KCG +E A +VF E +E+ + WS MI G AIHG
Sbjct: 328 RIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHG 387
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++AL F M G KP+ V F+ +L+AC H G V+EG +FF +M Y I P ++HY
Sbjct: 388 HFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHY 447
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+VD+L RAG L EA +FIR MPI P+ VVWGAL CR HKN+++AE AS++L QL+P
Sbjct: 448 TLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEP 507
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ G +V LSN YA RW+D RVR MR+ G K PGWS I VD +H FVAGD TH
Sbjct: 508 KHPGSYVFLSNAYASVGRWDDAERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHN 567
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+A +I+ +++ + KGY VL +IEE+EKE+ L HSEKLAL FG+++T PG
Sbjct: 568 RAVEIYSKLDEISASAREKGYTKEIECVLHNIEEEEKEEALGYHSEKLALAFGIVSTRPG 627
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T +RI+KNLRVC DCH+ K S++ REI++RD RFH F G CSCGDYW
Sbjct: 628 TTVRIVKNLRVCVDCHSFMKYASKMSKREIILRDMKRFHHFNDGVCSCGDYW 679
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 78/144 (54%), Gaps = 2/144 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N+LI+ ++K G + A+ +F++M E+ V +W+ M+ G + +G ++AL +F M+E G +
Sbjct: 245 NSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGAR 304
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
PN T + L AC +G +D G R ++ + G + +VD+ ++ G ++ A +
Sbjct: 305 PNDYTIVSALSACAKIGALDAGLR-IHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEK 363
Query: 139 FIRNMPIKPNGVVWGALLGGCRVH 162
K ++W ++ G +H
Sbjct: 364 VFHETKEK-GLLIWSVMIWGWAIH 386
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 50/244 (20%), Positives = 105/244 (43%), Gaps = 25/244 (10%)
Query: 16 RVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEI 75
RV I ++ A +F E + + ++A+I+GLA + + + +++ F M++
Sbjct: 75 RVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAENSRFESSISFFVLMLKW 134
Query: 76 GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGI-------IPQIEHYGCMVDLLS 128
I P+ +TF +L + + GR + ++G+ + ++ Y + +L S
Sbjct: 135 KISPDRLTFPFVLKSAAALSNGGVGRA-LHCGILKFGLEFDSFVRVSLVDMYVKVEELGS 193
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGG-CRVHKNIDLAEEASRQLDQLDPLNNGYHV 187
E+ E ++N + ++W L+ G CR+ DL +A+ D + + G
Sbjct: 194 ALKVFDESPESVKNGSV----LIWNVLIHGYCRMG---DLV-KATELFDSMPKKDTGSWN 245
Query: 188 VLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQ 247
L N + + D+ R ++L + K W+++ V+ F + E F
Sbjct: 246 SLINGFM---KMGDMGRAKELFVKMPEKNVVSWTTM-----VNGFSQNGDPEKALETFFC 297
Query: 248 MWEK 251
M E+
Sbjct: 298 MLEE 301
>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 895
Score = 351 bits (900), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 161/351 (45%), Positives = 233/351 (66%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y +SGF N+ + N LI+MY KCG LE +VF M+E+ V TW+A+I ++G+
Sbjct: 545 IHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGE 604
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K+AL +F M G+ P+ V FI + AC H G V EG RFF M T+Y + P++EHY
Sbjct: 605 GKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYA 664
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL+R+G L +A EFI +MP+KP+ +WGALL CR N ++A+ S+++ +L+
Sbjct: 665 CVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSD 724
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ GY+V++SNIYA +W+ V VR M+ G+KK PG S I + V+ F GD++ Q
Sbjct: 725 DTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQ 784
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+K+ + E L+ M +GY+ + L D+EE +K L HSE+LA+ FGL+NT PG+
Sbjct: 785 YDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNTKPGS 844
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P+ +MKNLRVC DCH K I++I+ REI+VRD NRFH F+ G+CSCGD+W
Sbjct: 845 PLLVMKNLRVCGDCHTVTKYITKIMQREILVRDANRFHRFKDGACSCGDHW 895
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+Y SGF + CN LIDMY KCG L A+ VF + + TW+++I G G
Sbjct: 344 VHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGY 403
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR 101
KE L SF KM+++ KP+ VTF+ LL + +++GR
Sbjct: 404 YKEGLESF-KMMKMERKPDSVTFVLLLSIFSQLADINQGR 442
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 20/166 (12%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VHE++ + GF ++ + N LIDMY + L+ AR VF EM R +W+++I G +G
Sbjct: 143 VHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGF 202
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL ++K G+ P+ T +L ACG + V EG +G+I +I G
Sbjct: 203 WEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEG-------VAVHGVIEKI---G 252
Query: 122 CMVDLLSRAGFLQEAYEFIR---------NMPIKPNGVVWGALLGG 158
D++ G L ++F R M +K + V W ++ G
Sbjct: 253 IAGDVIIGNGLLSMYFKFERLREARRVFSKMAVK-DSVTWNTMICG 297
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 3/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + G ++ + N L+ MY K L ARRVF +M + TW+ MI G A G+
Sbjct: 244 VHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGR 303
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ ++ F MI+ G P+ ++ + ACG G + G +F + G
Sbjct: 304 HEASVKLFMDMID-GFVPDMLSITSTIRACGQSGDLQVG-KFVHKYLIGSGFECDTVACN 361
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ ++ G L A E K + V W +L+ G
Sbjct: 362 ILIDMYAKCGDLLAAQEVFDTTKCK-DSVTWNSLING 397
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 2/149 (1%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF + + N+L+D+Y KCG ++ +VF M + +W+ +I
Sbjct: 452 GFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMI 511
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
N+M G+ P+ T +G+L C + +G+ + + G + ++++ S+
Sbjct: 512 NEMRTEGLMPDEATVLGILPMCSLLAVRRQGKE-IHGYIFKSGFESNVPIGNALIEMYSK 570
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
G L+ + + M K + V W AL+
Sbjct: 571 CGSLENCIKVFKYMKEK-DVVTWTALISA 598
>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
Length = 624
Score = 351 bits (900), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 167/351 (47%), Positives = 235/351 (66%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + +S + V NTL+DMY K G + AR+VF ++ + + TW++M+ A +G
Sbjct: 275 VHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGL 334
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA++ F +M + G+ N +TF+ +L AC H G V EG+R+F M EY + P+I+HY
Sbjct: 335 GKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYF-EMMKEYDLEPEIDHYV 393
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+V LL RAG L A FI MP++P VWGALL CR+HKN + + A+ + +LDP
Sbjct: 394 TVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPD 453
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G V+L NIYA +W+ ARVR +M+ GVKK P S + ++ VH FVA D+THPQ
Sbjct: 454 DSGPPVLLYNIYASTGQWDAAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTHPQ 513
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
AE+I++MW ++ ++ +GY+P+ VLL ++++EKE L HSEKLAL F L+ P G
Sbjct: 514 AEEIYKMWGEISKKIRKEGYVPDMDYVLLHVDDQEKEANLQYHSEKLALAFALIEMPAGA 573
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRIMKN+R+C DCH+AFK IS++ REIVVRD NRFH F +GSCSCGDYW
Sbjct: 574 TIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSSGSCSCGDYW 624
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 4/159 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + S F + + N+LI MY KC + AR VF +M + + +W+++I G A +
Sbjct: 72 KIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMRRKDMVSWTSLIAGYAQND 131
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR-RFFYSMTTEYGIIPQIEH 119
EA+ M++ KPNG TF LL A G + D G R +++ + G +
Sbjct: 132 MPVEAIGLLPGMLKGRFKPNGFTFASLLKAAG--AYADSGTGRQIHALAVKCGWHEDVYV 189
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ +R G + A + K NGV W AL+ G
Sbjct: 190 GSALLDMYARCGKMDMATAVFDKLDSK-NGVSWNALISG 227
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 58/101 (57%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G+ ++ V + L+DMY +CG ++ A VF +++ + +W+A+I G A G
Sbjct: 173 QIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKG 232
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR 101
+ AL +F +M+ G + T+ + + +G +++G+
Sbjct: 233 DGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGK 273
>gi|242043238|ref|XP_002459490.1| hypothetical protein SORBIDRAFT_02g005450 [Sorghum bicolor]
gi|241922867|gb|EER96011.1| hypothetical protein SORBIDRAFT_02g005450 [Sorghum bicolor]
Length = 395
Score = 351 bits (900), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 162/350 (46%), Positives = 247/350 (70%), Gaps = 6/350 (1%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
+ R++ + N+L+D+Y KCG +E AR+VF M ER + +W+AM+ LA HG+ +++L
Sbjct: 47 SAAVSRDVLINNSLVDLYGKCGAVELARQVFDRMPERDLASWNAMVLALANHGRVRDSLD 106
Query: 68 SFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126
F++M + ++PN +TF+ +L AC + G V+EGRR+F +M +EYGI P+IEHYGC+VD+
Sbjct: 107 LFDRMTRVENVRPNAITFVAVLSACNYGGLVEEGRRYFAAMVSEYGIRPRIEHYGCLVDI 166
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC-RVHKNIDLAEEASR-QLDQLDPLNNG 184
L+RAGF++EA + + M +P+ ++W +LL C + + ++L+E ++ LD D +G
Sbjct: 167 LARAGFIEEALDVVAGMNCRPDSIIWRSLLDACCKRNAGLELSEAMAKLALDVPDDAVSG 226
Query: 185 YHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEK 244
+V+LS +YA A+RW DV +R+LM G KK PG+SSI +DG VH+FVAGD +HPQ+E+
Sbjct: 227 VYVLLSRVYASAQRWNDVGMIRRLMSEEGFKKEPGFSSIEMDGSVHQFVAGDTSHPQSEE 286
Query: 245 IFQMWEKLLDGMKLKGYIPNTS--VVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTP 302
I++ +++ + GY P+ S ++ DI+ + K L HSE+LA++FGL+N PG P
Sbjct: 287 IYEKLDEIQQRLTSAGYKPDLSEAPMVADID-RTKGATLRLHSERLAISFGLLNVTPGAP 345
Query: 303 IRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC+DCH KLIS++ + EI+VRDR RFH F+ GSCSC DYW
Sbjct: 346 IRILKNLRVCKDCHTISKLISKLYDVEIIVRDRIRFHHFKGGSCSCKDYW 395
>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
Length = 636
Score = 350 bits (899), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 168/361 (46%), Positives = 240/361 (66%), Gaps = 11/361 (3%)
Query: 2 VHEYSNQS-GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
VH Y+ + G +I V L+DMY KCG ++ A +VF + +R V W+AM+ GLA+HG
Sbjct: 277 VHVYALKGMGREMHIMVGTALVDMYAKCGPIDMAFKVFKYLPKRNVVAWNAMLGGLAMHG 336
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ K L F KMIE KP+ +TF+ +L AC H G VD+G +F S+ +EYG P+IEHY
Sbjct: 337 RGKFVLDIFPKMIEEA-KPDDLTFMAVLSACSHSGLVDQGYHYFRSLESEYGTTPKIEHY 395
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVD+L RAG L+EA I+ MP+ PN VV G+LLG C H + L E ++L Q+D
Sbjct: 396 ACMVDILGRAGHLEEAVMLIKKMPMCPNEVVLGSLLGSCNAHGKLQLGERILQELIQMDG 455
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N YHV+LSN+Y + + +R+++++ G++K PG SSI V G +H+F AGD++HP
Sbjct: 456 HNTEYHVLLSNMYVLEGKQDKANSLRQILKSKGIRKVPGVSSIYVGGNIHQFSAGDKSHP 515
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLL---------DIEEKEKEKFLYRHSEKLALT 291
++I+ ++ ++L GY+PNT+ + E +EKE+ L+ HSEKLA+
Sbjct: 516 LTKEIYHALNNMIQRLRLAGYVPNTTNQVFPGSDGREGSSEEMEEKEQALFLHSEKLAVC 575
Query: 292 FGLMNTPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDY 351
FG ++T PG P+ I KNLR+C+DCH+A K++S+I NREIV+RDRNRFHCF+ GSCSC DY
Sbjct: 576 FGHISTKPGAPLYIFKNLRICQDCHSAIKIVSKIYNREIVIRDRNRFHCFKHGSCSCSDY 635
Query: 352 W 352
W
Sbjct: 636 W 636
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 78/185 (42%), Gaps = 33/185 (17%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFI------------------------------ 39
G ++VCN +++MYVKCG +E RRVF
Sbjct: 152 GLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNERNVVSWSTLLEGVVKWEGVENGRVVF 211
Query: 40 -EMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWV 97
EM ER W+ MI G +G ++E ++M+ + N VT +L AC G V
Sbjct: 212 DEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRLGLNFVTLSSILSACAQSGDV 271
Query: 98 DEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
GR G I +VD+ ++ G + A++ + +P K N V W A+LG
Sbjct: 272 LMGRWVHVYALKGMGREMHIMVGTALVDMYAKCGPIDMAFKVFKYLP-KRNVVAWNAMLG 330
Query: 158 GCRVH 162
G +H
Sbjct: 331 GLAMH 335
>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 350 bits (899), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 167/336 (49%), Positives = 230/336 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y ++G N+ + TLIDMY+KCGC+E A VF M E+ + TW+A+I GLA++G
Sbjct: 395 VHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGL 454
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ +L F+ M + + PN +TF+G+L AC HMG VDEG+ FYSM ++ I P ++HYG
Sbjct: 455 VESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYG 514
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG LQEA E + MP+ P+ WGALLG C+ H + ++ R+L +L P
Sbjct: 515 CMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPD 574
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G+HV+LSNIYA +W+DV +R +M V K PG S I +GV+HEF+AGD+THP
Sbjct: 575 HDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPD 634
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ I M ++ +KL+GY P+ + VLLD++E+EKE L+RHSEKLA+ FGL+N P T
Sbjct: 635 MDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPT 694
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNR 337
PIRIMKNLR+C DCH A KLIS+ R+IV R +
Sbjct: 695 PIRIMKNLRICNDCHTAAKLISKAFCRKIVFLFRGQ 730
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 72/140 (51%), Gaps = 2/140 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N++I Y+KC ++ A+ +F M E+ V +WS+MI G A + E L F +M G K
Sbjct: 311 NSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFK 370
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ T + ++ AC + +++G ++ ++ G+ + ++D+ + G ++ A E
Sbjct: 371 PDETTLVSVISACARLAALEQG-KWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALE 429
Query: 139 FIRNMPIKPNGVVWGALLGG 158
M I+ W AL+ G
Sbjct: 430 VFYGM-IEKGISTWNALILG 448
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 97/203 (47%), Gaps = 5/203 (2%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R+I N++I ++ G + A ++F EM E+ + TWSA+I + +EA+ +F M
Sbjct: 173 RSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGM 232
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+IG+ + V + L AC ++ V+ G + +S++ + G I ++ + S+ G
Sbjct: 233 HKIGVMVDEVVAVSALSACANLLVVNMG-KLIHSLSLKIGTESYINLQNALIYMYSKCGD 291
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNI 192
+ A + + + + W +++ G + +L + A D + + + +
Sbjct: 292 IMVARKLFDEAYL-LDLISWNSMISG---YLKCNLVDNAKAIFDSMPEKDVVSWSSMISG 347
Query: 193 YAEAERWEDVARVRKLMRNLGVK 215
YA+ + +++ + + M+ G K
Sbjct: 348 YAQNDLFDETLALFQEMQMSGFK 370
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + GF ++ V NTLI+ + C + A RVF E +W++++ G G
Sbjct: 99 QVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIG 158
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM 107
+EA +++M E I + + G G V E + F M
Sbjct: 159 NVEEAKHIYHQMPERSIIASNSMIVLF----GMRGLVVEACKLFDEM 201
>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
Length = 805
Score = 350 bits (899), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 162/352 (46%), Positives = 240/352 (68%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y ++G+ + V N L+D+YVKCG L AR +F + + + +W+ MI G +HG
Sbjct: 454 IHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGY 513
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ +FN+M + GI+P+ V+FI +L+AC H G +++G RFFY M ++ I P++EHY
Sbjct: 514 GNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYA 573
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLLSR G L +AYEF+ +PI P+ +WGALL GCR + +I+LAE+ + ++ +L+P
Sbjct: 574 CMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPE 633
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAG-DETHP 240
N GY+V+L+NIYAEAE+WE+V R+R+ + G++K PG S I + G V+ FV+G + +HP
Sbjct: 634 NTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHP 693
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++ I + +K+ MK +G+ P T L++ +E +KE L HSEKLA+ FGL+ PP
Sbjct: 694 HSKNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPR 753
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR+ KNLRVC DCH K +S+ REIV+RD NRFH F+ G CSC +W
Sbjct: 754 KTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 805
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + +S F R I NTL+DMY KCG L+GA RVF +M ER V +W++MI G G+
Sbjct: 273 VHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGR 332
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ A+ +M + G+K + V +LHAC G +D G+ + + +
Sbjct: 333 SDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKD-VHDYIKANNMESNLFVCN 391
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
++D+ ++ G ++ A M +K + + W ++G
Sbjct: 392 ALMDMYAKCGSMEAANSVFSTMVVK-DIISWNTMIG 426
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 76/157 (48%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V EY+ F+ +I + +++ ++ E A +F ++ +R V +W++MI G +G
Sbjct: 172 VSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGL 231
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ L + +M+ +GI + T I +L C + G + G+ +S+ + +I
Sbjct: 232 TERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKA-VHSLAIKSSFERRINFSN 290
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ S+ G L A M + N V W +++ G
Sbjct: 291 TLLDMYSKCGDLDGALRVFEKMG-ERNVVSWTSMIAG 326
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
L+ Y CG L+ RRVF ME++ V+ W+ M+ A G KE++ F M+E GI+
Sbjct: 140 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIE 197
>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
Length = 624
Score = 350 bits (899), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 168/351 (47%), Positives = 233/351 (66%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + +S + V NT++DMY K G + AR+VF + + + TW++M+ A +G
Sbjct: 275 VHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGL 334
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA++ F +M + GI N +TF+ +L AC H G V EG+ +F M EY + P+IEHY
Sbjct: 335 GKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYF-DMIKEYNLEPEIEHYV 393
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+VDLL RAG L A FI MP++P VWGALL CR+HKN + + A+ + QLDP
Sbjct: 394 TVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPD 453
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G V+L NIYA W+ ARVRK+M+ GVKK P S + + VH FVA D+THP+
Sbjct: 454 DSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHPR 513
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
AE+I++MW+++ ++ +GY+P+ VLL ++E+E+E L HSEK+AL F L+ P G
Sbjct: 514 AEEIYKMWDEISMKIRKEGYVPDMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPAGA 573
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRIMKN+R+C DCH+AFK IS++ REIVVRD NRFH F GSCSCGDYW
Sbjct: 574 TIRIMKNIRICGDCHSAFKYISKVFEREIVVRDTNRFHHFSNGSCSCGDYW 624
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 4/159 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + S F + + N+LI +Y KCG + A +VF +M ++ + +W+++I G A +
Sbjct: 72 KIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQND 131
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG-RRFFYSMTTEYGIIPQIEH 119
EA+ M++ KPNG TF LL A G + D G +++ + +
Sbjct: 132 MPAEAIGLLPGMLKGRFKPNGFTFASLLKAAG--AYADSGIGGQIHALAVKCDWHEDVYV 189
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ +R G + A + K NGV W AL+ G
Sbjct: 190 GSALLDMYARCGKMDMATAVFDKLDSK-NGVSWNALISG 227
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 76/156 (48%), Gaps = 2/156 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + + ++ V + L+DMY +CG ++ A VF +++ + +W+A+I G A G
Sbjct: 173 QIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKG 232
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ AL F +M G + T+ + +G +++G+ M +
Sbjct: 233 DGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVG- 291
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
M+D+ +++G + +A + + + + V W ++L
Sbjct: 292 NTMLDMYAKSGSMIDARKVFERV-LNKDLVTWNSML 326
>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 605
Score = 350 bits (899), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 163/339 (48%), Positives = 233/339 (68%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N+ V +LIDMYVKCG LE VF M + ++++ MI GLAIHG+ +EAL F+ M+
Sbjct: 267 NVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREALRVFSDML 326
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
E G+ P+ V ++G+L AC H G V EG + F M E+ I P I+HYGCMVDL+ RAG L
Sbjct: 327 EEGLTPDDVVYVGVLSACSHAGLVKEGFQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGML 386
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIY 193
+EAY+ I++MPIKPN VVW +LL C+VH N+++ E A+ + +L+ N G ++VL+N+Y
Sbjct: 387 KEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAADNIFKLNKHNPGDYLVLANMY 446
Query: 194 AEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLL 253
A A++W +VAR+R M + +TPG+S + + V++FV+ D++ PQ E I+ M +++
Sbjct: 447 ARAQKWANVARIRTEMVEKNLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQME 506
Query: 254 DGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCE 313
+K +GY P+ S VLLD++E EK + L HS+KLA+ F L+ T G+P+RI +NLR+C
Sbjct: 507 WQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPVRISRNLRMCN 566
Query: 314 DCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
DCH K IS I REI VRD NRFH F+ G+CSC DYW
Sbjct: 567 DCHTYTKFISVIYEREITVRDSNRFHHFKDGTCSCKDYW 605
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 9/166 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + +G ++ V N LI MY KCG +E A VF +M+E++V +WS++I A
Sbjct: 152 QIHAHVFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVE 211
Query: 61 QAKEALTSFNKMIEIGI-KPNGVTFIGLLHACGHMGWVDEGR---RFFYSMTTEYGIIPQ 116
E L M G + + L AC H+G + GR +E ++ +
Sbjct: 212 MWHECLMLLGDMSREGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVK 271
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ + G L++ +NM K N + ++ G +H
Sbjct: 272 TS----LIDMYVKCGSLEKGLCVFQNMAHK-NRYSYTVMIAGLAIH 312
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88
G +E A +F ++EE F ++ MI+G +EAL + +M+E GI+P+ T+ +L
Sbjct: 79 GSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVL 138
Query: 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPN 148
AC + + EG + ++ G+ + ++ + + G ++ A M K +
Sbjct: 139 KACSLLVALKEGVQ-IHAHVFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEK-S 196
Query: 149 GVVWGALLGGCRVHKNIDLAEE 170
W +++G H ++++ E
Sbjct: 197 VASWSSIIGA---HASVEMWHE 215
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 350 bits (898), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 166/353 (47%), Positives = 243/353 (68%), Gaps = 3/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y +++ + + LIDMY KCG ++ ARRVF + +R + TW++MI GL++HG
Sbjct: 312 IHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGL 371
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
E L +F++M+ G KP+ +T +G+L+ C H G V+EG F+ M +GI+P++EHYG
Sbjct: 372 GAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYG 431
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP- 180
C++DLL RAG L+ A+E I++MP++P+ V W ALL CR+H ++DL E + +L P
Sbjct: 432 CLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAELCPG 491
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ G +V+LSN+YA +WE V +VRK M G + PG S I +DGVVHEF+A D+ HP
Sbjct: 492 SHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGCSWIEIDGVVHEFLAADKLHP 551
Query: 241 QAEKIFQMWEKLLDGMKLK-GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
+ +I + ++L + ++ GY+P+T VL D+ E++KE+ + HSEKLA+ FGL++T
Sbjct: 552 RISEINKKLNEVLRRISIEGGYVPSTKQVLFDLNEEDKEQAVSWHSEKLAVAFGLLSTQE 611
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GT IRI KNLR CEDCH+A K IS + NREIVVRDR+RFH F+ G+CSC DYW
Sbjct: 612 GT-IRITKNLRTCEDCHSAMKTISLVFNREIVVRDRSRFHTFRYGNCSCTDYW 663
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 87/193 (45%), Gaps = 34/193 (17%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + G+ +I V N+L++MY + A+RVF EM +R V TW+++++G A+ G+
Sbjct: 179 VHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGE 238
Query: 62 A-------------------------------KEALTSFNKMI-EIGIKPNGVTFIGLLH 89
EAL FN M+ +KPN + +L
Sbjct: 239 LVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILS 298
Query: 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNG 149
AC H+G +D+G ++ + + I+ ++D+ ++ G + A + K +
Sbjct: 299 ACAHLGALDQG-KWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLH-KRDL 356
Query: 150 VVWGALLGGCRVH 162
+ W +++ G +H
Sbjct: 357 LTWTSMISGLSMH 369
>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Brachypodium distachyon]
Length = 661
Score = 350 bits (898), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 170/351 (48%), Positives = 225/351 (64%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H +S + GF ++ V + L+DMY KCG AR +F M R V +W+AMI G A+HG
Sbjct: 311 AHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGD 370
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A A+ F M + KP+ VTF +L AC G +EGRR+F M +GI P++EHY
Sbjct: 371 AANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYA 430
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMV LL R+G L EAY+ I MP +P+ +WG+LLG CRV+ N+ LAE A+ +L QL+P
Sbjct: 431 CMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPG 490
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V+LSNIYA + W+ V RVR M+N+G+KK G S I + VH +AGD +HP
Sbjct: 491 NAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKNKVHMLLAGDNSHPM 550
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
I + +L M G+ P+ VL D+EE+EK+ L HSEKLA+ GL++T PGT
Sbjct: 551 MTAITEKLNQLTIEMNRLGFAPSRDFVLHDVEEQEKDNILAVHSEKLAVALGLISTRPGT 610
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P+R++KNLR+C DCH A K IS REI VRD NRFH F+ G CSCGDYW
Sbjct: 611 PLRVIKNLRICGDCHEAMKFISSFEQREISVRDTNRFHHFKDGKCSCGDYW 661
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 37/199 (18%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y ++G R + V LIDMY KCG + RVF E V + +A++ GL+ +
Sbjct: 174 QVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNA 233
Query: 61 QAKEALTSFNKMI-----------------------------------EIGIKPNGVTFI 85
Q EAL F + I IG++PN VT
Sbjct: 234 QVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIP 293
Query: 86 GLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPI 145
+L A ++ + GR + + G + + +VD+ ++ G + A MP
Sbjct: 294 CVLPAFANVAALMHGRS-AHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPS 352
Query: 146 KPNGVVWGALLGGCRVHKN 164
+ N V W A++GG +H +
Sbjct: 353 R-NVVSWNAMIGGYAMHGD 370
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + SG + V ++L+ Y++ G AR VF M E+ V WSA+I G + G
Sbjct: 39 LHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGD 98
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+ A +M G++PN +T+ GL+ G + M +E G P
Sbjct: 99 AEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALDAVTALVRMHSE-GFFPDATGVS 157
Query: 122 CMVDLLSRAGFLQE 135
C LS G ++E
Sbjct: 158 CA---LSAVGDVKE 168
>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Cucumis sativus]
gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Cucumis sativus]
Length = 724
Score = 350 bits (898), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 235/352 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y + GF + L+ MY KCG +E A+ VF + + +F+W++++ G A HG
Sbjct: 373 QIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHG 432
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q +AL F +++ G KP+G+ FIG+L AC H G VD+G +F+S+ ++G+ I+HY
Sbjct: 433 QHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHY 492
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C++DLL+RAG EA I MPIKP+ +W ALLGGCR+H N++LA+ A++ L +++P
Sbjct: 493 ACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEP 552
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N +V L+NIYA A + A +R+ M + G+ K PG S I + VH F GD +HP
Sbjct: 553 ENPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMSWIEIRREVHVFSVGDNSHP 612
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++++I + +L MK GY+P+T+ VL D+E ++KE+ L HSEKLA+ FG+++TP G
Sbjct: 613 KSKEILEYLSELSKRMKEVGYVPDTNFVLHDVELEQKEENLSYHSEKLAVAFGIISTPSG 672
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPI++ KNLR C DCH A K IS I R+I+VRD NRFHCF+ GSCSC DYW
Sbjct: 673 TPIKVFKNLRTCVDCHNAIKFISNITGRKIIVRDSNRFHCFEGGSCSCKDYW 724
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G + V +L+DMY KCG +E AR +F +MEER V +W+ MI +G
Sbjct: 272 KIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNG 331
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +E F ++ I PN TF G+L+AC + D G++ ++ G
Sbjct: 332 RREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQ-IHAYMVRVGFDSFSSAA 390
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
+V + S+ G ++ A +P +P+ W +LL G H D A
Sbjct: 391 SALVHMYSKCGDIENAKSVFEILP-QPDLFSWTSLLVGYAQHGQHDKA 437
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/288 (21%), Positives = 103/288 (35%), Gaps = 56/288 (19%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ N +I YVK G E AR +F +M R F+W+A+I G H + +EAL + M
Sbjct: 182 RDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLM 241
Query: 73 ------------------------------------IEIGIKPNGVTFIGLLHACGHMGW 96
+ +G+ + V + LL G G
Sbjct: 242 QKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGS 301
Query: 97 VDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIR---NMPIKPNGVVWG 153
++E R F M + + M+ + G +E + R N I PN +
Sbjct: 302 IEEARYIFDKMEER-----DVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFA 356
Query: 154 ALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213
+L C DL ++ + ++ + + S + + D+ + + L
Sbjct: 357 GVLNACADLAAEDLGKQIHAYMVRVG--FDSFSSAASALVHMYSKCGDIENAKSVFEILP 414
Query: 214 VKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLL-DGMKLKG 260
W+S+ V G H Q +K +E LL G K G
Sbjct: 415 QPDLFSWTSLLV---------GYAQHGQHDKALHFFELLLKSGTKPDG 453
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + SG + + N L+DMY KCG L A +VF EM R + +W+ MI G G
Sbjct: 140 QVHAHIKTSG-SIGLYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGG 198
Query: 61 QAKEALTSFNKM 72
++A F+KM
Sbjct: 199 NFEKARNLFDKM 210
>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 637
Score = 350 bits (898), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 163/352 (46%), Positives = 238/352 (67%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + GF R ++ +L+DMY K G ++ AR +F ++ +R + +W+AMI G +HG
Sbjct: 286 LHGFGWRRGFDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGH 345
Query: 62 AKEALTSFNKM-IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL FNKM +E + P+ +TF+G+L AC H G V E + FF M Y I P ++H+
Sbjct: 346 FDEALKLFNKMRVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHF 405
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VD+L AG +EAY+ I+ MP++P+ +WGALL GC++HKN++L E A ++L +L+P
Sbjct: 406 TCLVDVLGHAGRFEEAYDLIKGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEP 465
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ G +V+LSNIYA++ +WE ARVRKLM N G+KK G S I + G H F+ GD +HP
Sbjct: 466 EDAGNYVLLSNIYAQSGKWEKAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHP 525
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++ +I++ E+L M GY+P+T V D+ + EK + HSE+LA+ FGL++TP G
Sbjct: 526 RSAEIYEELERLEGLMSDAGYMPDTMPVFHDVGDDEKRNMMRSHSERLAIAFGLISTPSG 585
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T + + KNLRVCEDCH KLIS+IV REI++RD NR+H F G CSC DYW
Sbjct: 586 TKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 5/192 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VHE + + ++ VC L+DMY KCGC++ AR VF + R W++MI +G+
Sbjct: 185 VHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGR 244
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL+ M G+ P T + + A + GR + G Q +
Sbjct: 245 PMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRE-LHGFGWRRGFDRQDKLKT 303
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL---DQL 178
+VD+ +++G++Q A + +K V W A++ G +H + D A + ++ Q+
Sbjct: 304 SLVDMYAKSGWVQVARVLFEQL-MKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQV 362
Query: 179 DPLNNGYHVVLS 190
P N + VLS
Sbjct: 363 TPDNITFVGVLS 374
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 78/153 (50%), Gaps = 8/153 (5%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
SG + + L+D+Y CG + ARR+F M +R VF W+ +I+ A G + A+
Sbjct: 91 SGLGPDTVLATKLVDLYAACGLVGHARRLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQL 150
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYS-MTTEYGIIPQIEHYGC--MVD 125
+ M++ G++P+ T+ L AC + ++ GR + T +G + + C +VD
Sbjct: 151 YRGMVDYGVEPDNFTYPLALKACAALLDLETGREVHERVLGTHWG----EDMFVCAGLVD 206
Query: 126 LLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ ++ G + +A + ++ + VVW +++
Sbjct: 207 MYAKCGCVDDARAVFDRIRVR-DSVVWNSMIAA 238
>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
Length = 810
Score = 350 bits (898), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 166/339 (48%), Positives = 224/339 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+HE + ++ + N L+DMY CGCL+ AR VF M R V +W+++I HG
Sbjct: 313 RIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHG 372
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ F KM G++P+ + F+ +L AC H G +D G+ +FYSMT+E+ I P++EHY
Sbjct: 373 HGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHY 432
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG ++EAY+FI MPIKPN VWGALLG CR+H N+D+ A+ L +L P
Sbjct: 433 ACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAP 492
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
GY+V+LSNIYA A RW DV+ VR +M + G+KK PG S+ + VH F GD +HP
Sbjct: 493 KQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHP 552
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q++ I++ +LL ++ GY P L D+EE++KE L HSEKLA+ F L+NT PG
Sbjct: 553 QSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPG 612
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFH 339
TPIRI NLR C DCH A KLIS I REI+++D NR H
Sbjct: 613 TPIRITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIH 651
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 33/239 (13%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G N+ V ++ I MY +CG + A ++F EM+ R V +W+AMI G A G
Sbjct: 143 QIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAG 202
Query: 61 QAKEALTSFNKMIEIGI-KPNGVTFIGLLHACGHMGWVDEG--RRFFYSMTTEYGIIPQI 117
A+ F +++ + KP+ T +L + G D + F M + G+I
Sbjct: 203 LFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFK-GLIS-- 259
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGC----------RVHKN 164
+ M+ + + EA E M I+P+ V +L C R+H+
Sbjct: 260 --WNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEV 317
Query: 165 IDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSI 223
I S L L N L ++YA ++ R + ++G + W+SI
Sbjct: 318 IKRRRMCSSML-----LENA----LMDMYANCGCLKE---ARDVFDSMGTRDVVSWTSI 364
>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
Length = 842
Score = 350 bits (898), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 163/351 (46%), Positives = 237/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
++ Y ++G + ++R+ TL+DM+ +CG E A +F + R V W+A I +A+ G
Sbjct: 492 IYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGN 551
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+ A+ F+ MIE G+KP+GV F+G L AC H G V +G+ FYSM +G+ P+ HYG
Sbjct: 552 AERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYG 611
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L+EA + I +MP++PN V+W +LL CRV N+++A A+ ++ L P
Sbjct: 612 CMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPE 671
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
G +V+LSN+YA A RW D+A+VR M+ G++K PG SSI + G HEF +GDE+HP+
Sbjct: 672 RTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPE 731
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
I M +++ G++P+ S VL+D++EKEK L RHSEKLA+ +GL+++ GT
Sbjct: 732 MPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGT 791
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC DCH+ K S++ NREI++RD NRFH + G CSCGD+W
Sbjct: 792 TIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 123/278 (44%), Gaps = 43/278 (15%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G+ +++ V N+L+ Y +CG L+ AR+VF EM ER V +W++MI G A
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRD 214
Query: 61 QAKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
AK+A+ F +M+ + + PN VT + ++ AC + ++ G
Sbjct: 215 FAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETG------------------- 255
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
++ Y FIRN I+ N ++ AL+ ID+A+ R D+
Sbjct: 256 --------------EKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAK---RLFDEYG 298
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVK--KTPGWSSITVDGVVHEFVAGDE 237
N +++ Y + V LM + GV+ + S+I+ + + G
Sbjct: 299 ASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKS 358
Query: 238 THPQAEKI-FQMWEKLLDG---MKLKGYIPNTSVVLLD 271
H + F+ W+ + + M +K + +T+ + D
Sbjct: 359 CHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFD 396
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 33/173 (19%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H Y ++GF +CN LIDMY+KC + A R+F M +TV TW++++ G +G+
Sbjct: 360 HGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEV 419
Query: 63 KEALTSFNKM------------------------IEI--------GIKPNGVTFIGLLHA 90
A +F M IE+ G+ +GVT + + A
Sbjct: 420 DAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASA 479
Query: 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM 143
CGH+G +D + +Y + GI + +VD+ SR G + A ++
Sbjct: 480 CGHLGALDLAKWIYYYIEKN-GIQLDVRLGTTLVDMFSRCGDPESAMSIFNSL 531
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 16/234 (6%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEG---ARRVFIEMEER-TVFTWSAMIQGLAI 58
H + G ++ L+ + G E A+ VF E T F ++++I+G A
Sbjct: 52 HRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYAS 111
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
G EA+ F +M+ GI P+ TF L AC G + + + + G +
Sbjct: 112 SGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQ-IHGLIVKMGYAKDLF 170
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL--- 175
+V + G L A + M + N V W +++ G + D A++A
Sbjct: 171 VQNSLVHFYAECGELDSARKVFDEMS-ERNVVSWTSMICG---YARRDFAKDAVDLFFRM 226
Query: 176 ---DQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD 226
+++ P N+ V + + A+ E E +V +RN G++ S VD
Sbjct: 227 VRDEEVTP-NSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVD 279
>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
[Vitis vinifera]
Length = 643
Score = 350 bits (898), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 161/352 (45%), Positives = 227/352 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH Y + G+ + +CN+LI MY +CG LE A +F M+ER V +WSAMI G A+HG
Sbjct: 292 RVHNYIEEHGYDGALNLCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHG 351
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ +F +M ++G+ P+ T G+L AC H G VD+G FF M+ +GI P I HY
Sbjct: 352 YGREAIEAFEQMQQLGVSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGIEPNIHHY 411
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLL RAG L +AY+ I +M IKP+ +W LLG CR+H++ L E L +L
Sbjct: 412 GCMVDLLGRAGLLDQAYQLIMSMVIKPDSTLWRTLLGACRIHRHATLGERVIGHLIELKA 471
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
G +V+L NIY+ W+ V +RK M+ G++ +PG S+I + G VHEFV D HP
Sbjct: 472 QEAGDYVLLLNIYSSVGNWDKVTDLRKFMKEKGIQTSPGCSTIELKGKVHEFVVDDILHP 531
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ ++I++M +++ +K+ GY+ S L ++ +EK L HSEKLA+ FG++ TPPG
Sbjct: 532 RTDEIYEMLDEIGKQLKIAGYVAELSSELHNLGAEEKGNRLSYHSEKLAIAFGVLATPPG 591
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IR+ KNLR+C DCH K++S NRE+V+RDR RFH F+ G CSC YW
Sbjct: 592 TTIRVAKNLRICVDCHNFAKVLSGAYNREVVIRDRTRFHHFREGQCSCNGYW 643
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 91/180 (50%), Gaps = 4/180 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G + + + TL+D+Y C E A +VF E+ + +W+ +I +
Sbjct: 189 QIHARILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCCIHNR 248
Query: 61 QAKEALTSFNKMIEI--GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+ ++AL F+ M G +P+ VT + LL AC ++G ++ G R ++ E+G +
Sbjct: 249 RTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGER-VHNYIEEHGYDGALN 307
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++ + SR G L++AY + M + N V W A++ G +H A EA Q+ QL
Sbjct: 308 LCNSLITMYSRCGRLEKAYSIFKRMDER-NVVSWSAMISGFAMHGYGREAIEAFEQMQQL 366
>gi|326506208|dbj|BAJ86422.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 582
Score = 350 bits (898), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 172/353 (48%), Positives = 237/353 (67%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF-IEMEERTVFTWSAMIQGLAIHG 60
H Y + + ++ + LI+MY KCG +EGA VF R+V TW+AM+ G G
Sbjct: 230 AHAYVCRKEIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNAMLAGFTASG 289
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++ AL F +M G PN +TF LL+AC H G+V+EG +F MT I P I HY
Sbjct: 290 CSERALELFTRMESSGFVPNKITFNTLLNACSHGGFVEEGIGYFERMTNSSSIEPDIAHY 349
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDL RAG ++A E I+ MP++P+ VW AL+G CR + N +L ++A +L + P
Sbjct: 350 GCMVDLFCRAGLFEKAEEMIQMMPMEPDAAVWKALVGACRTYSNFELGKKAGHRLIEAAP 409
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+LSNIYA W+ V +VRKLM N GV+K PG SSI +DGV+HEF++GD++H
Sbjct: 410 NDHAGYVLLSNIYALDGNWKGVYKVRKLMLNCGVQKVPGSSSIELDGVIHEFISGDKSHS 469
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKE-KEKFLYRHSEKLALTFGLMNTPP 299
+ +++M ++ +K+ GY P+TS VLLDI++++ KE L HSE+LAL FGL++T P
Sbjct: 470 RKRDVYEMLSEICQQLKVAGYAPDTSQVLLDIDDEDVKESSLALHSERLALAFGLISTAP 529
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GTPIRI+KNLRVC DCH A KL+S+I R I+VRD NRFH F+ GSCSCGDYW
Sbjct: 530 GTPIRIVKNLRVCGDCHNAIKLLSKIYGRCIMVRDANRFHRFREGSCSCGDYW 582
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 79/191 (41%), Gaps = 35/191 (18%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRV----------------------- 37
++H ++ + G + RV N LI Y CG L AR+V
Sbjct: 96 QLHGHAAKRGAASHRRVRNGLIHAYSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQGR 155
Query: 38 --------FIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG-IKPNGVTFIGLL 88
F +M R +W+ +I +G+ +EA+ F +M+ +P+ VT + ++
Sbjct: 156 DTGALREFFAQMPARDSVSWNTVIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVI 215
Query: 89 HACGHMGWVDEGR-RFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKP 147
A ++G + +G Y E + ++ ++++ S+ GF++ A N
Sbjct: 216 SAIAYLGALAQGLWAHAYVCRKEIEVDEKLS--SALINMYSKCGFIEGAVYVFENSCALR 273
Query: 148 NGVVWGALLGG 158
+ W A+L G
Sbjct: 274 SVDTWNAMLAG 284
>gi|226507132|ref|NP_001145890.1| uncharacterized protein LOC100279406 [Zea mays]
gi|219884839|gb|ACL52794.1| unknown [Zea mays]
Length = 318
Score = 350 bits (898), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 159/316 (50%), Positives = 222/316 (70%)
Query: 37 VFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGW 96
VF M+ERT+ +W+++I LA+ G+ KEA+ F +M G++P+ V FIG+L AC H G
Sbjct: 3 VFQGMKERTIVSWTSVIDALAMEGRGKEAVAVFEEMKTAGVRPDDVAFIGVLTACSHAGM 62
Query: 97 VDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
VDEG +F SM YGI P+IEHYGCMVD+ RAG ++ A EF+ MP+KPN ++W L+
Sbjct: 63 VDEGYGYFESMRMAYGIDPKIEHYGCMVDMFGRAGMVERAMEFVHKMPMKPNPIIWRTLV 122
Query: 157 GGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKK 216
CR H ++L E +R L P + +V+LSN+YA RW++ + +R+ M G+KK
Sbjct: 123 AACRAHGRLELGETITRNLLNEYPAHEANYVMLSNVYALTRRWKEKSEIRREMSKRGIKK 182
Query: 217 TPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKE 276
PG S + +DG VHEF+AGDE+HPQ ++I+ M E++ ++ G+I TS VLLD++E++
Sbjct: 183 VPGCSLVELDGEVHEFIAGDESHPQWKEIYMMVEEMARELRRAGHISATSEVLLDLDEED 242
Query: 277 KEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRN 336
KE L HSEKLA+ F L+ TPPGT +R++KNLRVC DCHAA K IS + NREI+VRDR+
Sbjct: 243 KEVALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAIKCISLVYNREIIVRDRS 302
Query: 337 RFHCFQAGSCSCGDYW 352
RFH F+ GSCSC D+W
Sbjct: 303 RFHRFKNGSCSCNDFW 318
>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
Length = 716
Score = 350 bits (897), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 164/350 (46%), Positives = 231/350 (66%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H +S ++G ++ V + LIDMY KCG + +R F M R + +W++++ G A+HG+
Sbjct: 367 HCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKT 426
Query: 63 KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC 122
EA+ F M G KP+ V+F +L AC G +EG +F SM+ +G+ ++EHY C
Sbjct: 427 FEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSC 486
Query: 123 MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182
MV LL R+G L+EAY I+ MP +P+ VWGALL CRVH +DL E A++++ +L+P N
Sbjct: 487 MVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPRN 546
Query: 183 NGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQA 242
G +++LSNIYA W +V VR +MR+ G+KK PG+S I + VH +AGD +HPQ
Sbjct: 547 PGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLLAGDSSHPQM 606
Query: 243 EKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTP 302
+I + KL MK GY+P+T VL D+EE++KE+ L HSEKLA+ GL+NT PG P
Sbjct: 607 PQIIEKLAKLTVEMKKSGYVPHTDFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTKPGFP 666
Query: 303 IRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
++++KNLR+C DCHA K IS+ REI VRD NRFH F+ G CSCGDYW
Sbjct: 667 LQVIKNLRICRDCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCGDYW 716
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 35/195 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE----------------- 43
++H Y + G + V + LIDMY KC C VF EM+E
Sbjct: 231 QIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNG 290
Query: 44 ----------------RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGL 87
V +W++MI + +G+ EAL F +M G+KPN VT L
Sbjct: 291 LVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCL 350
Query: 88 LHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKP 147
L ACG++ + G+ + + GI + ++D+ ++ G + + MP +
Sbjct: 351 LPACGNIAALLHGKA-AHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNR- 408
Query: 148 NGVVWGALLGGCRVH 162
N V W +L+ G +H
Sbjct: 409 NLVSWNSLMAGYAMH 423
>gi|218192417|gb|EEC74844.1| hypothetical protein OsI_10704 [Oryza sativa Indica Group]
Length = 614
Score = 350 bits (897), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 166/339 (48%), Positives = 224/339 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+HE + ++ + N L+DMY CGCL+ AR VF M R V +W+++I HG
Sbjct: 148 RIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHG 207
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ F KM G++P+ + F+ +L AC H G +D G+ +FYSMT+E+ I P++EHY
Sbjct: 208 HGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHY 267
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG ++EAY+FI MPIKPN VWGALLG CR+H N+D+ A+ L +L P
Sbjct: 268 ACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAP 327
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
GY+V+LSNIYA A RW DV+ VR +M + G+KK PG S+ + VH F GD +HP
Sbjct: 328 KQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDSVHTFHIGDTSHP 387
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q++ I++ +LL ++ GY P L D+EE++KE L HSEKLA+ F L+NT PG
Sbjct: 388 QSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPG 447
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFH 339
TPIRI NLR C DCH A KLIS I REI+++D NR H
Sbjct: 448 TPIRITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIH 486
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 33/216 (15%)
Query: 24 MYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGI-KPNGV 82
MY +CG + A ++F EM+ R V +W+AMI G A G A+ F +++ + KP+
Sbjct: 1 MYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAG 60
Query: 83 TFIGLLHACGHMGWVDEG--RRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFI 140
T +L + G D + F M G+I + M+ + + EA E
Sbjct: 61 TMASILPSMGKARVEDIALLKGVFDEMRFT-GLIS----WNAMLAVYTNNEMHVEAVELF 115
Query: 141 RNMP---IKPNGVVWGALLGGC----------RVHKNIDLAEEASRQLDQLDPLNNGYHV 187
M I+P+ V +L C R+H+ I S L L N
Sbjct: 116 MRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSML-----LENA--- 167
Query: 188 VLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSI 223
L ++YA ++ R + ++G + W+SI
Sbjct: 168 -LMDMYANCGCLKE---ARDVFDSMGTRDVVSWTSI 199
>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial [Vitis vinifera]
Length = 623
Score = 350 bits (897), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 167/342 (48%), Positives = 230/342 (67%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
F +++ + N LIDMY KCG LE A F M E+ V +WS M+ GLA +G +++AL F
Sbjct: 282 FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFE 341
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
M E G +PN +T +G+L AC H G V++G +F SM +G+ P EHYGC++DLL RA
Sbjct: 342 SMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRA 401
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190
G L EA + I M +P+ V W LLG CRVH+N+DLA A++++ +L+P + G +++LS
Sbjct: 402 GRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLS 461
Query: 191 NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWE 250
NIYA +RWEDVA VRK M N G++KTPG S I VD +H F+ GD +HP+ E+I Q
Sbjct: 462 NIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLN 521
Query: 251 KLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLR 310
L++ + GY+P+T+ VL D+E ++KE L HSEKLA+ FGLMN +RI KNLR
Sbjct: 522 DLIERVMGVGYVPDTNFVLQDLEGEQKEDSLRYHSEKLAIMFGLMNLSREKTVRIRKNLR 581
Query: 311 VCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+C DCH K++S + +R IV+RD R+H FQ G CSCGDYW
Sbjct: 582 ICGDCHVFAKVVSRMEHRSIVIRDPIRYHHFQDGVCSCGDYW 623
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 6/158 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVHE+ G+ + V NTL++MYVK LE A +F EM ER V +W+ MI + +
Sbjct: 76 RVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYS-NK 134
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+AL M G++PN T+ +L AC + R + + G+ +
Sbjct: 135 LNDKALKCLILMFREGVRPNMFTYSSVLRACDGL----PNLRQLHCGIIKTGLESDVFVR 190
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ S+ L A MP + + VVW +++GG
Sbjct: 191 SALIDVYSKWSDLDNALGVFDEMPTR-DLVVWNSIIGG 227
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 6/152 (3%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
++G ++ V + LID+Y K L+ A VF EM R + W+++I G A + EAL
Sbjct: 180 KTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALN 239
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF-FYSMTTEYGIIPQIEHYGCMVDL 126
F +M G + T +L AC + ++ GR+ + + + +I ++D+
Sbjct: 240 LFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKFDQDLILN----NALIDM 295
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ G L++A M ++ + + W ++ G
Sbjct: 296 YCKCGSLEDANSAFSRM-VEKDVISWSTMVAG 326
>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 1135
Score = 350 bits (897), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 165/358 (46%), Positives = 237/358 (66%), Gaps = 7/358 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ + ++ V + L+DMY KCGCL A RVF +M R V TW+ +I +HG+
Sbjct: 778 IHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGK 837
Query: 62 AKEALTSFNKMIEIG------IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP 115
+EAL F M G I+PN VT+I + AC H G VDEG F++M +G+ P
Sbjct: 838 GEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEP 897
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGV-VWGALLGGCRVHKNIDLAEEASRQ 174
+ +HY C+VDLL R+G ++EAYE I MP N V W +LLG CR+H++++ E A++
Sbjct: 898 RGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKH 957
Query: 175 LDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVA 234
L L+P ++V++SNIY+ A W+ VRK M+ +GV+K PG S I VH+F++
Sbjct: 958 LFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDEVHKFLS 1017
Query: 235 GDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGL 294
GD +HPQ++++ + E L M+ +GY+P+ S VL +++++EKE L HSE+LA+ FGL
Sbjct: 1018 GDASHPQSKELHEYLETLSQRMRKEGYVPDISCVLHNVDDEEKETMLCGHSERLAIAFGL 1077
Query: 295 MNTPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+NTPPGT IR+ KNLRVC DCH A K+IS+IV+REI++RD RFH F G+CSCGDYW
Sbjct: 1078 LNTPPGTTIRVAKNLRVCNDCHVATKIISKIVDREIILRDVRRFHHFANGTCSCGDYW 1135
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 86/190 (45%), Gaps = 20/190 (10%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + GF ++ V N L+DMY + G +E ++ +F M +R + +W+ MI G + G+
Sbjct: 659 IHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGR 718
Query: 62 AKEALTSFNKMIE------------------IGIKPNGVTFIGLLHACGHMGWVDEGRRF 103
+AL ++M + KPN VT + +L C + + +G+
Sbjct: 719 YDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKE- 777
Query: 104 FYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHK 163
++ + + + +VD+ ++ G L A MPI+ N + W L+ +H
Sbjct: 778 IHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIR-NVITWNVLIMAYGMHG 836
Query: 164 NIDLAEEASR 173
+ A E R
Sbjct: 837 KGEEALELFR 846
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ V N+L++MY KCG L AR+VF ++ +R +W++MI L + + +L F M+
Sbjct: 366 SVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLML 425
Query: 74 EIGIKPNGVTFIGLLHACGHM 94
+ P T + + HAC H+
Sbjct: 426 SENVDPTSFTLVSVAHACSHV 446
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y+ ++G R N L+ MY + G + A+ +F + + + +W+ +I L+ +
Sbjct: 455 QVHAYTLRNGDLRTY-TNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQND 513
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +EAL MI G++P+GVT +L AC + + GR +I
Sbjct: 514 RFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVG 573
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ ++ + + ++ VW ALL G
Sbjct: 574 TALVDMYCNCKQPKKG-RLVFDGVVRRTVAVWNALLAG 610
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 10/180 (5%)
Query: 2 VHEYSNQSG-FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+H Y+ ++G N V L+DMY C + R VF + RTV W+A++ G A +
Sbjct: 556 IHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNE 615
Query: 61 QAKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMG-WVDEGRRFFYSMTTEYGIIPQIE 118
+AL F +MI E PN TF +L AC + D+ Y + +G ++
Sbjct: 616 FDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQ 675
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC----RVHKNIDLAEEASRQ 174
+ ++D+ SR G ++ + M K + V W ++ GC R ++L E R+
Sbjct: 676 N--ALMDMYSRMGRVEISKTIFGRMN-KRDIVSWNTMITGCIVCGRYDDALNLLHEMQRR 732
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 350 bits (897), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 162/351 (46%), Positives = 238/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + ++GF + V N L+DMY+KCG L AR +F + E+ + +W+ MI G +HG
Sbjct: 474 IHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGY 533
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ +FN+M GI+P+ V+FI +L+AC H G +DEG FF M I P+ EHY
Sbjct: 534 GSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYA 593
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL+RAG L +AY+FI+ MPI+P+ +WGALL GCR++ ++ LAE+ + + +L+P
Sbjct: 594 CIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPE 653
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+V+L+NIYAEAE+WE+V ++R+ + G++K PG S I + G VH FV GD +HP
Sbjct: 654 NTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPL 713
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A KI + +K MK +G+ P L+ ++ EKE L HSEK+A+ FG+++ PPG
Sbjct: 714 ANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMAFGILSLPPGK 773
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+R+ KNLRVC DCH K +S++V R+I++RD NRFH F+ GSCSC +W
Sbjct: 774 TVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 824
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ ++ F + + + N L+DMY K G L A +VF M ER+V +W++MI G A G
Sbjct: 273 LHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGL 332
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ ++ F++M + GI P+ T +LHAC G ++ G+ ++ E + +
Sbjct: 333 SDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKD-VHNYIKENKMQSDLFVSN 391
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ ++ G + +A+ M +K + V W ++GG
Sbjct: 392 ALMDMYAKCGSMGDAHSVFSEMQVK-DIVSWNTMIGG 427
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 3/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y ++ + ++ V N L+DMY KCG + A VF EM+ + + +W+ MI G + +
Sbjct: 374 VHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSL 433
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL F +M + KPN +T +L AC + ++ G+ + G
Sbjct: 434 PNEALNLFVEM-QYNSKPNSITMACILPACASLAALERGQE-IHGHILRNGFSLDRHVAN 491
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ + G L A +P K + V W ++ G +H
Sbjct: 492 ALVDMYLKCGALGLARLLFDMIPEK-DLVSWTVMIAGYGMH 531
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 83/155 (53%), Gaps = 6/155 (3%)
Query: 5 YSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKE 64
Y+ FR ++ + + ++ ++ +E AR++F E+ +R V +W++MI G +G +++
Sbjct: 177 YAKIGNFRESLSLFKRMRELGIRR--VESARKLFDELGDRDVISWNSMISGYVSNGLSEK 234
Query: 65 ALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCM 123
L F +M+ +GI + T + ++ C + G + GR Y++ +G ++ C+
Sbjct: 235 GLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFG--KELTLNNCL 292
Query: 124 VDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+D+ S++G L A + M + + V W +++ G
Sbjct: 293 LDMYSKSGNLNSAIQVFETMG-ERSVVSWTSMIAG 326
>gi|224088870|ref|XP_002308572.1| predicted protein [Populus trichocarpa]
gi|222854548|gb|EEE92095.1| predicted protein [Populus trichocarpa]
Length = 433
Score = 350 bits (897), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 170/351 (48%), Positives = 225/351 (64%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + I + L+DMY KCGC+E +R +F M R V TW+ MI GLA HG
Sbjct: 83 IHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFENMPRRDVSTWNVMICGLASHGL 142
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K+ALT F + + G+ P VTF+G+L+AC G V EGR +F MT YGI P++EHYG
Sbjct: 143 GKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKEGRHYFQMMTDSYGIEPEMEHYG 202
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG + EA + I +M I P+ V+W +L CR+H +L E+ +L +LDP
Sbjct: 203 CMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLCACRIHGLAELGEKIGNRLIELDPT 262
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+G++V L++IYA + +WEDV RVR+LM K GWS I G VH FVAG H Q
Sbjct: 263 YDGHYVQLASIYANSRKWEDVVRVRRLMAERNTSKVAGWSLIEARGKVHRFVAGHREHEQ 322
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ +I +M E + + GY+PN S VL DI E+EKE + HSE+LA+ FGL+ T PG+
Sbjct: 323 SLEIQKMLEIIETRLAAAGYVPNVSPVLHDIGEEEKENAIKVHSERLAIAFGLLVTGPGS 382
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC DCH K+IS + REI+VRD +RFH F+ G CSC DYW
Sbjct: 383 CIRIVKNLRVCWDCHEVTKMISRVFEREIIVRDGSRFHHFKEGKCSCLDYW 433
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 78/162 (48%), Gaps = 7/162 (4%)
Query: 25 YVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTF 84
+ + G + +++F EM ER V +W+ M+ +G+ EAL F +M E G+ P+ T
Sbjct: 5 FARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPDEATL 64
Query: 85 IGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP 144
+ +L A + ++ G+ +S+ + I ++D+ ++ G ++++ NMP
Sbjct: 65 VTMLSASAQLCLLEHGQS-IHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFENMP 123
Query: 145 IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYH 186
+ + W ++ G H L ++A ++ LN G H
Sbjct: 124 -RRDVSTWNVMICGLASH---GLGKDALTLFERF--LNEGLH 159
>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
Length = 804
Score = 350 bits (897), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 157/353 (44%), Positives = 236/353 (66%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERT-VFTWSAMIQGLAIH 59
++H + +S R+ V N +I MY + G ARR+F ++ R TW++MI LA H
Sbjct: 452 QIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQH 511
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
GQ +EA+ F +M+ G++P+ +T++G+L AC H G+V+EG+R++ + E+ I P++ H
Sbjct: 512 GQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSH 571
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CMVDLL+RAG EA EFIR MP++P+ + WG+LL CRVHKN +LAE A+ +L +D
Sbjct: 572 YACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSID 631
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N+G + ++N+Y+ RW D AR+ K + V+K G+S + +H F A D H
Sbjct: 632 PNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVH 691
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
PQ + ++ M ++ + +K G++P+ VL D++++ KE+ L RHSEKLA+ FGL++TP
Sbjct: 692 PQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPE 751
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T +R+MKNLRVC DCHAA K IS++ +REI+VRD RFH F+ G CSC DYW
Sbjct: 752 KTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 2/159 (1%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
RRN+ N+L+ M+ K G L AR VF EM ER +W+ M+ GL G+ EA+ +
Sbjct: 95 RRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLD 154
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M G P T +L +C GR+ +S + G+ + ++++ + G
Sbjct: 155 MTADGFTPTQFTLTNVLSSCAVTQAGAVGRK-VHSFVVKLGLGSCVPVANSVLNMYGKCG 213
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
+ A MP++ W A++ +DLAE
Sbjct: 214 DAETASTVFERMPVRSVS-SWNAMVSLNTHLGRMDLAES 251
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N+ L++ YVK G +E AR +F M R V W+AMI G +G+ EA+ F MI
Sbjct: 364 NVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMI 423
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRF 103
G +PN T +L C + +D G++
Sbjct: 424 TCGPEPNSYTLAAVLSVCASLACLDYGKQI 453
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 36/192 (18%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTV-------------- 46
+VH + + G + V N++++MY KCG E A VF M R+V
Sbjct: 185 KVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLG 244
Query: 47 -----------------FTWSAMIQGLAIHGQAKEALTSFNKMI-EIGIKPNGVTFIGLL 88
+W+AMI G +G +AL F++M+ E + P+ T +L
Sbjct: 245 RMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVL 304
Query: 89 HACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFI-RNMPIK 146
AC ++G V G++ Y + TE Q+ + ++ +++G ++ A + ++M
Sbjct: 305 SACANLGNVRIGKQVHAYILRTEMAYNSQVTN--ALISTYAKSGSVENARRIMDQSMETD 362
Query: 147 PNGVVWGALLGG 158
N + + ALL G
Sbjct: 363 LNVISFTALLEG 374
>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 349 bits (896), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 228/352 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H G+ ++ V N +I MY KCG +E A VF+ M + +W++MI L HG
Sbjct: 446 QLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHG 505
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+ F++M++ G+ P+ +TF+ +L AC H G V++GR +F SM YGI P +HY
Sbjct: 506 HGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHY 565
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
MVDL RAG A I +MP KP VW ALL GCR+H N+DL EA+ QL +L P
Sbjct: 566 ARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMP 625
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G +V+LSNIYA+ RW +VA+VRKLMR+ V+K P S I V+ VH F+ D+ HP
Sbjct: 626 QNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHP 685
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +++ E+L MK GYIP+T VL D+E ++KE L HSEKLA+ FG+M PPG
Sbjct: 686 EVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPG 745
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+R+ KN+R+C DCH AFK +S++ REI+VRDR RFH F+ G CSC DYW
Sbjct: 746 ATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RNI N ++ YV G +E A+ F EM + + T + MI GLA +G E L F +M
Sbjct: 357 RNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQM 416
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
G +P F G L AC +G ++ GR+ ++ G + M+ + ++ G
Sbjct: 417 RLDGFEPCDFAFAGALTACSVLGALENGRQ-LHAQLVHLGYESSLSVGNAMISMYAKCGV 475
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASRQ 174
++ A MP + V W +++ H K I+L ++ ++
Sbjct: 476 VEAAESVFVTMP-SVDLVSWNSMIAALGQHGHGVKAIELFDQMLKE 520
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 16/179 (8%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+R+ T+I YV+ L GAR VF M E W+AMI G G +EALT K
Sbjct: 220 KRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRK 279
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGC------MV 124
M +GI+ + +T+ ++ AC ++G G++ Y + E H C ++
Sbjct: 280 MRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNEL----NPNHSFCLSVSNALI 335
Query: 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183
L + + EA + MP++ N + W A+L G + N EEA +++ P+ N
Sbjct: 336 TLYCKNNKVDEARKIFYAMPVR-NIITWNAILSG---YVNAGRMEEAKSFFEEM-PVKN 389
>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
Length = 669
Score = 349 bits (896), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 166/339 (48%), Positives = 224/339 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+HE + ++ + N L+DMY CGCL+ AR VF M R V +W+++I HG
Sbjct: 203 RIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHG 262
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ F KM G++P+ + F+ +L AC H G +D G+ +FYSMT+E+ I P++EHY
Sbjct: 263 HGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHY 322
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG ++EAY+FI MPIKPN VWGALLG CR+H N+D+ A+ L +L P
Sbjct: 323 ACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAP 382
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
GY+V+LSNIYA A RW DV+ VR +M + G+KK PG S+ + VH F GD +HP
Sbjct: 383 KQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHP 442
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q++ I++ +LL ++ GY P L D+EE++KE L HSEKLA+ F L+NT PG
Sbjct: 443 QSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPG 502
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFH 339
TPIRI NLR C DCH A KLIS I REI+++D NR H
Sbjct: 503 TPIRITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIH 541
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 33/239 (13%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G N+ V ++ I MY +CG + A ++F EM+ R V +W+AMI G A G
Sbjct: 33 QIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAG 92
Query: 61 QAKEALTSFNKMIEIGI-KPNGVTFIGLLHACGHMGWVDEG--RRFFYSMTTEYGIIPQI 117
A+ F +++ + KP+ T +L + G D + F M + G+I
Sbjct: 93 LFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFK-GLIS-- 149
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGC----------RVHKN 164
+ M+ + + EA E M I+P+ V +L C R+H+
Sbjct: 150 --WNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEV 207
Query: 165 IDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSI 223
I S L L N L ++YA ++ R + ++G + W+SI
Sbjct: 208 IKRRRMCSSML-----LENA----LMDMYANCGCLKE---ARDVFDSMGTRDVVSWTSI 254
>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
Length = 605
Score = 349 bits (896), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 168/353 (47%), Positives = 235/353 (66%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIH 59
VH + QSG + + ++ ++DMY KCGC+E A RVF + + + + TW+ MI G A+H
Sbjct: 253 VHRWVEQSGIQMDEKLATAVVDMYCKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVH 312
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G+ ++AL F +M G+ P+ VT + +L AC H G + EGR +F + YGI P++EH
Sbjct: 313 GRGQDALKLFGRMEREGVAPDDVTLVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEH 372
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YGCMVDL RAG L+EA + I++MP++P+ V GAL G ++H ++DL E ++ +LD
Sbjct: 373 YGCMVDLYGRAGRLEEAKKVIQDMPMEPDVGVLGALFGASKIHGDVDLGEAIGWRVIELD 432
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N+G +V+L+N+ A A RWEDVARVR+LM V K G S I V G V EF G H
Sbjct: 433 PQNSGRYVLLANLLATAGRWEDVARVRRLMDERNVSKEAGRSVIEVQGEVCEFQCGGLCH 492
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+AE+++ M ++ ++ +GY+P+T VL I E+EKE L HSEKLA+ FGL++T P
Sbjct: 493 PRAEEVYAMASDMMRKIRAEGYVPDTRDVLHAIAEEEKETPLLYHSEKLAIAFGLLHTRP 552
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G +RI KNLRVC DCH A K +S + R+IVVRDRNRFH F+ G CSC DYW
Sbjct: 553 GDTMRITKNLRVCRDCHEATKFVSRVFERQIVVRDRNRFHHFKDGQCSCKDYW 605
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 2/145 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
T++ +K G + AR +F M ER + +W+AM+ G + +AL F++M G+
Sbjct: 169 TTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMRARGVD 228
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
N + AC G + GR + + GI + +VD+ + G ++EA+
Sbjct: 229 GNVFVAATAVVACTGAGALARGRE-VHRWVEQSGIQMDEKLATAVVDMYCKCGCVEEAWR 287
Query: 139 FIRNMPIKPNGV-VWGALLGGCRVH 162
+P+ G+ W ++GG VH
Sbjct: 288 VFEALPLAAKGLTTWNCMIGGFAVH 312
>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Vitis vinifera]
Length = 681
Score = 349 bits (896), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 163/352 (46%), Positives = 230/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + F + V + L+DMY KCG LE A + F E+ + T W++++ HG
Sbjct: 330 QLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHG 389
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
K+A+ F +M++ G+KPN +TFI LL C H G V+EG +FYSM YG++P EHY
Sbjct: 390 LGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHY 449
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C++DLL RAG L+EA EFI MP +PN W + LG CR+H + ++ + A+ +L +L+P
Sbjct: 450 SCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEP 509
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G V+LSNIYA +WEDV VR MR+ VKK PG+S + V H F A D +HP
Sbjct: 510 KNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHP 569
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ I++ + LLD +K GY+P T V LD+++ KEK L+RHSE++A+ F L++ P G
Sbjct: 570 RKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIG 629
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PI + KNLRVC DCH+A K IS++ R+I+VRD +RFH F GSCSCGDYW
Sbjct: 630 KPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 81/150 (54%), Gaps = 2/150 (1%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
+G+ + N L++MY KCG L+ A ++F M +R + +W+AMI GL+ + + EA+ +
Sbjct: 34 AGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRT 93
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
F M G P F + AC +G ++ G++ + + ++GI ++ + D+ S
Sbjct: 94 FCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQ-MHCLALKFGIGSELFVGSNLEDMYS 152
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ G + +A + MP K + V W A++ G
Sbjct: 153 KCGAMFDACKVFEEMPCK-DEVSWTAMIDG 181
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 100/230 (43%), Gaps = 8/230 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G + V + L DMY KCG + A +VF EM + +W+AMI G + G
Sbjct: 127 QMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIG 186
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +EAL +F KMI+ + + L ACG + GR +S + G I
Sbjct: 187 EFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRS-VHSSVVKLGFESDIFVG 245
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC----RVHKNIDLAEEASRQLD 176
+ D+ S+AG ++ A N V + L+ G ++ K + + E RQ
Sbjct: 246 NALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQ-- 303
Query: 177 QLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD 226
++P N L A E ++ + + + P SSI VD
Sbjct: 304 GIEP-NEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVD 352
>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
Length = 825
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 170/352 (48%), Positives = 232/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +S F + VCN+LID Y KCGC+ A +VF + + V +W+A+I G A+HG
Sbjct: 474 QIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHG 533
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A +AL FN+M + KPN VTF+ LL CG G V++G F SMT ++ I P ++HY
Sbjct: 534 RATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHY 593
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+V LL RAG L +A +FI ++P P+ +VW ALL C VHKN+ L + ++ ++ +++P
Sbjct: 594 TCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEP 653
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +V+LSN+YA A + VA +RK MRN+GVKK G S + + G VH F G HP
Sbjct: 654 QDETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADHP 713
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
I M E L +GY+P+ +VVL D++E+EK + L+ HSE+LAL +GL TPPG
Sbjct: 714 DMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPG 773
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRIMKNLR C DCH FK+IS+IV REIVVRD NRFH F G CSCGDYW
Sbjct: 774 HPIRIMKNLRSCLDCHTVFKVISKIVQREIVVRDINRFHHFDEGICSCGDYW 825
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 72/139 (51%), Gaps = 2/139 (1%)
Query: 20 TLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP 79
L+DMY KCG +E AR VF + V WS +I A Q ++A F +M+ + P
Sbjct: 291 ALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVP 350
Query: 80 NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEF 139
N + G+L AC ++ ++D G++ +++ + G ++ ++D+ ++ ++ + E
Sbjct: 351 NEFSLSGVLQACANVAFLDLGQQ-IHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEI 409
Query: 140 IRNMPIKPNGVVWGALLGG 158
R++ N V W ++ G
Sbjct: 410 FRSLR-DANEVSWNTIIVG 427
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 86/183 (46%), Gaps = 2/183 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G+ + V N L+D+Y KC +E + +F + + +W+ +I G G
Sbjct: 373 QIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSG 432
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A++AL+ F +M + VTF +L AC + + + +S+ +
Sbjct: 433 FAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQ-IHSLIEKSTFNNDTIVC 491
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
++D ++ G +++A + ++ I+ + V W A++ G +H A E ++++ D
Sbjct: 492 NSLIDTYAKCGCIRDALKVFESI-IQCDVVSWNAIISGYALHGRATDALELFNRMNKSDT 550
Query: 181 LNN 183
N
Sbjct: 551 KPN 553
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 4/157 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G RN V ++LID Y CG + AR VF + + TW+AM+ + +
Sbjct: 172 IHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDI 231
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHY 120
++AL +F+KM G KPN +L A + G+ ++ T P +
Sbjct: 232 PEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVG-- 289
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
G ++D+ ++ G++++A +P + ++W L+
Sbjct: 290 GALLDMYAKCGYIEDARTVFEIIP-HDDVILWSFLIS 325
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 15/122 (12%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N L+++Y K G L ARR+F M ER + ++ ++QG A+ G +EA F ++ G +
Sbjct: 88 NVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHE 147
Query: 79 PNGVTFIGLL---------------HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCM 123
N +L HAC D S+ Y + + H C+
Sbjct: 148 VNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCV 207
Query: 124 VD 125
D
Sbjct: 208 FD 209
>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Vitis vinifera]
Length = 703
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 163/351 (46%), Positives = 237/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +SGF +I V N LI+MY K G +E A +VF+EM R TWSAMI GL+ HG
Sbjct: 353 LHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGL 412
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL F +M+ P+ VTF+G+L AC H+G V EG + + + GI P +EHY
Sbjct: 413 GREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYT 472
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+V LL +AG L EA F+++ P+K + V W LL C VH+N L ++ + + Q+DP
Sbjct: 473 CIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPG 532
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G +++LSN+YA+A+RW+ V ++RKLMR VKK PG S I + +H FV+ +THP+
Sbjct: 533 DVGTYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNSIHVFVSEGKTHPE 592
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ +I++ ++LL ++ GY+P+ + V D+E+++K +++ HSEKLA+ +GLM TP G
Sbjct: 593 SNQIYEKVQELLTMIRPMGYVPDIAAVFHDVEDEQKREYVSYHSEKLAIAYGLMKTPSGA 652
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR++KNLR+C DCH+A KLIS++ NR I+VRD NRFHCF G CSC DYW
Sbjct: 653 PIRVIKNLRMCVDCHSAVKLISKVTNRMIIVRDANRFHCFGDGGCSCADYW 703
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 86/162 (53%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH ++G + V + +IDMY KCG + AR+VF ++ + V +W+A++ + +G
Sbjct: 251 QVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNG 310
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F +M G+ PN TF LL++C + + G + ++ + G I
Sbjct: 311 CFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHG-KLLHTRIKKSGFEDHIIVG 369
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++++ S++G ++ A++ M I + + W A++ G H
Sbjct: 370 NALINMYSKSGSIEAAHKVFLEM-ICRDSITWSAMICGLSHH 410
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 6 SNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEA 65
+NQ+ + NI N+LI++Y KC + AR +F M +R V +W A++ G +G E
Sbjct: 54 TNQAT-KDNIVQVNSLINLYAKCDQIMVARILFDGMRKRNVVSWGALMAGYFHNGLVLEV 112
Query: 66 LTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEG 100
L F MI + ++PN F ++ +C G V EG
Sbjct: 113 LRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEG 148
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H Y+ +SG + V N LI MY + ++GA V+ E+ VF+++ +I GL +G
Sbjct: 150 QCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENG 209
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF---FYSMTTEYGIIPQI 117
EAL ++M++ I + VT++ C H+ + G + + EY
Sbjct: 210 YPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVS- 268
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ + G + A + + K N V W A+L
Sbjct: 269 ---SAIIDMYGKCGNILNARKVFNRLQTK-NVVSWTAILAA 305
>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 605
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 163/339 (48%), Positives = 234/339 (69%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N+ V +LIDMYVKCG LE VF M + ++++ MI GLAIHG+ +EA+ F+ M+
Sbjct: 267 NVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRVFSDML 326
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
E G+ P+ V ++G+L AC H G V+EG + F M E+ I P I+HYGCMVDL+ RAG L
Sbjct: 327 EEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGML 386
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIY 193
+EAY+ I++MPIKPN VVW +LL C+VH N+++ E A+ + +L+ N G ++VL+N+Y
Sbjct: 387 KEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFRLNKHNPGDYLVLANMY 446
Query: 194 AEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLL 253
A A++W +VAR+R M + +TPG+S + + V++FV+ D++ P E I+ M +++
Sbjct: 447 ARAKKWANVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPICETIYDMIQQME 506
Query: 254 DGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCE 313
+K +GY P+ S VLLD++E EK + L HS+KLA+ F L+ T G+PIRI +NLR+C
Sbjct: 507 WQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPIRISRNLRMCN 566
Query: 314 DCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
DCH K IS I REI VRDRNRFH F+ G+CSC DYW
Sbjct: 567 DCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 605
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 9/166 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++G ++ V N LI MY KCG +E A VF +M+E++V +WS++I A
Sbjct: 152 QIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVE 211
Query: 61 QAKEALTSFNKMIEIGI-KPNGVTFIGLLHACGHMGWVDEGR---RFFYSMTTEYGIIPQ 116
E L M G + + L AC H+G + GR +E ++ +
Sbjct: 212 MWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVK 271
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ + G L++ +NM K N + ++ G +H
Sbjct: 272 TS----LIDMYVKCGSLEKGLCVFQNMAHK-NRYSYTVMIAGLAIH 312
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 70/142 (49%), Gaps = 5/142 (3%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88
G +E A +F ++EE F ++ MI+G +EAL + +M+E GI+P+ T+ +L
Sbjct: 79 GSMEYACSIFSQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVL 138
Query: 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPN 148
AC + + EG + ++ + G+ + ++ + + G ++ A M K +
Sbjct: 139 KACSLLVALKEGVQ-IHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEK-S 196
Query: 149 GVVWGALLGGCRVHKNIDLAEE 170
W +++G H ++++ E
Sbjct: 197 VASWSSIIGA---HASVEMWHE 215
>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1064
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 156/352 (44%), Positives = 233/352 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH ++G+ VCN LI MY KCG + A + F+E+ + +W+A+I + HG
Sbjct: 713 QVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHG 772
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL SF++MI ++PN VT +G+L AC H+G VD+G +F SM +EYG+ P+ EHY
Sbjct: 773 FGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHY 832
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VD+L+RAG L A EFI+ MPIKP+ +VW LL C VHKN+++ E A+ L +L+P
Sbjct: 833 VCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEP 892
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+LSN+YA +++W+ R+ M+ GVKK PG S I V +H F GD+ HP
Sbjct: 893 EDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHP 952
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
A++I + ++ L GY+ + +L +++ ++K+ ++ HSEKLA++FGL++ P
Sbjct: 953 LADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPAT 1012
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PI +MKNLRVC DCHA K +S++ NREI+VRD RFH F+ G+CSC DYW
Sbjct: 1013 VPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 5/173 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ F+ N VC+ LIDMY K G L+ A + I + V +W+ MI G +
Sbjct: 511 QIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYN 570
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ALT+F +M++ GI+ + V + AC + + EG++ ++ G +
Sbjct: 571 FDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-IHAQACVSGFSSDLPFQ 629
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR 173
+V L SR G ++E+Y N + W AL+ G + N EEA R
Sbjct: 630 NALVTLYSRCGKIEESYLAFEQTEAGDN-IAWNALVSGFQQSGN---NEEALR 678
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 76/147 (51%), Gaps = 2/147 (1%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF + VCN L+ +Y G L A +F M +R T++ +I GL+ G ++A+ F
Sbjct: 318 GFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELF 377
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+M G++P+ T L+ AC G + G++ ++ TT+ G + G +++L ++
Sbjct: 378 KRMHLDGLEPDSNTLASLVVACSADGTLFRGQQ-LHAYTTKLGFASNNKIEGALLNLYAK 436
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALL 156
++ A ++ ++ N V+W +L
Sbjct: 437 CADIETALDYFLETEVE-NVVLWNVML 462
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G N + L D Y+ G L GA +VF EM ERT+FTW+ MI+ LA
Sbjct: 106 KLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRN 165
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
E F +M+ + PN TF G+L AC + ++ G+
Sbjct: 166 LIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVC 225
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++DL SR GF+ A + +K + W A++ G
Sbjct: 226 NPLIDLYSRNGFVDLARRVFDGLRLKDHS-SWVAMISG 262
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 5/178 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + SGF ++ N L+ +Y +CG +E + F + E W+A++ G G
Sbjct: 612 QIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSG 671
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F +M GI N TF + A + +G++ +++ T+ G + E
Sbjct: 672 NNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQ-VHAVITKTGYDSETEVC 730
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++ + ++ G + +A + + K N V W A++ H EA DQ+
Sbjct: 731 NALISMYAKCGSISDAEKQFLEVSTK-NEVSWNAIINAYSKH---GFGSEALDSFDQM 784
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 4/185 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H G R + VCN LID+Y + G ++ ARRVF + + +W AMI GL+ +
Sbjct: 208 QIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNE 267
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA+ F M +GI P F +L AC + ++ G + + + + G
Sbjct: 268 CEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQ-LHGLVLKLGFSSDTYVC 326
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQ--LDQL 178
+V L G L A NM + + V + L+ G + A E ++ LD L
Sbjct: 327 NALVSLYFHLGNLISAEHIFSNMS-QRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGL 385
Query: 179 DPLNN 183
+P +N
Sbjct: 386 EPDSN 390
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 82/178 (46%), Gaps = 8/178 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y+ + GF N ++ L+++Y KC +E A F+E E V W+ M+ +
Sbjct: 410 QLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLD 469
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYS-MTTEYGIIPQIEH 119
+ + F +M I PN T+ +L C +G ++ G + + T + Q+
Sbjct: 470 DLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNF----QLNA 525
Query: 120 YGC--MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
Y C ++D+ ++ G L A++ + K + V W ++ G + D A RQ+
Sbjct: 526 YVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAGYTQYNFDDKALTTFRQM 582
>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
Length = 616
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 163/352 (46%), Positives = 230/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + F + V + L+DMY KCG LE A + F E+ + T W++++ HG
Sbjct: 265 QLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHG 324
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
K+A+ F +M++ G+KPN +TFI LL C H G V+EG +FYSM YG++P EHY
Sbjct: 325 LGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHY 384
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C++DLL RAG L+EA EFI MP +PN W + LG CR+H + ++ + A+ +L +L+P
Sbjct: 385 SCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEP 444
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G V+LSNIYA +WEDV VR MR+ VKK PG+S + V H F A D +HP
Sbjct: 445 KNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHP 504
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ I++ + LLD +K GY+P T V LD+++ KEK L+RHSE++A+ F L++ P G
Sbjct: 505 RKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIG 564
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PI + KNLRVC DCH+A K IS++ R+I+VRD +RFH F GSCSCGDYW
Sbjct: 565 KPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 616
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 100/230 (43%), Gaps = 8/230 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G + V + L DMY KCG + A +VF EM + +W+AMI G + G
Sbjct: 62 QMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIG 121
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +EAL +F KMI+ + + L ACG + GR +S + G I
Sbjct: 122 EFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRS-VHSSVVKLGFESDIFVG 180
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC----RVHKNIDLAEEASRQLD 176
+ D+ S+AG ++ A N V + L+ G ++ K + + E RQ
Sbjct: 181 NALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQ-- 238
Query: 177 QLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD 226
++P N L A E ++ + + + P SSI VD
Sbjct: 239 GIEP-NEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVD 287
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 41 MEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG 100
M +R + +W+AMI GL+ + + EA+ +F M G P F + AC +G ++ G
Sbjct: 1 MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60
Query: 101 RRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + + ++GI ++ + D+ S+ G + +A + MP K + V W A++ G
Sbjct: 61 KQ-MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCK-DEVSWTAMIDG 116
>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
Length = 698
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 173/343 (50%), Positives = 233/343 (67%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G +CN LIDMY KCG ++ +R+VF M R + +W+ MI G IHG KEA F
Sbjct: 356 GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALF 415
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+M +G P+GVTFI LL AC H G V EG+ +F+ M YG+ P++EHY CMVDLLSR
Sbjct: 416 LEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSR 475
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
GFL EAYEFI++MP++ + VW ALLG CRV+KNIDL ++ SR + +L P G V+L
Sbjct: 476 GGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLL 535
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
SNIY+ A R+++ A VR + + G KK+PG S I ++G +H FV GD++HPQ+ +I++
Sbjct: 536 SNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYREL 595
Query: 250 EKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNL 309
+ +L G+K GY P+TS VL D+EE+EKEK L HSEKLA+ +G+++ I + KNL
Sbjct: 596 DNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNL 655
Query: 310 RVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
RVC DCH K IS + R I+VRD NRFH F+ G CSCGD+W
Sbjct: 656 RVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 698
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 91/181 (50%), Gaps = 5/181 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SG ++ N+L+ MY K G ++ A +F EM + ++SA++ G +G
Sbjct: 246 QLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNG 305
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+EA F KM ++P+ T + L+ AC H+ + GR S+ G+ +
Sbjct: 306 RAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASETSIC 364
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
++D+ ++ G + + + MP + + V W ++ G +H L +EA+ +++
Sbjct: 365 NALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIH---GLGKEATALFLEMNN 420
Query: 181 L 181
L
Sbjct: 421 L 421
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 12/168 (7%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ +G + ++ V L+DMYVKC CL A +F M R + W+AM+ G A HG
Sbjct: 32 IHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGM 91
Query: 62 AKEALTSFNKM-IEIG-IKPNGVTFIGLLHACGHMGWVDEGRR---------FFYSMTTE 110
A+ M +++ ++PN T + LL G + +G + ++
Sbjct: 92 YHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSK 151
Query: 111 YGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ + ++D+ ++ G L A MP + N V W AL+GG
Sbjct: 152 SKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR-NEVTWSALIGG 198
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 7/156 (4%)
Query: 6 SNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEA 65
+++S + + L+DMY KCG L ARRVF M R TWSA+I G + + +A
Sbjct: 149 NSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQA 208
Query: 66 LTSFNKMIEIG---IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC 122
F M+ G + P + L AC + + G + +++ + G+ +
Sbjct: 209 FLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMGEQ-LHALLAKSGVHADLTAGNS 265
Query: 123 MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + ++AG + +A M +K + V + AL+ G
Sbjct: 266 LLSMYAKAGLIDQAIALFDEMAVK-DTVSYSALVSG 300
>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1182
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 171/353 (48%), Positives = 241/353 (68%), Gaps = 3/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIHG 60
+H Y + + N R+ +LIDMY KCG ++ A VF E + +R V+ W+AMI G A+HG
Sbjct: 432 IHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHG 491
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +EA+ F KM + PN VTFI LL+AC H V EG+ +F M ++YGI P+IEHY
Sbjct: 492 KPEEAINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMASDYGINPEIEHY 551
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLLSR+G L+++ E I +MP+ P+ +WGALL CR++K+++ R + ++DP
Sbjct: 552 GCMVDLLSRSGHLKDSEEMILSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKEIDP 611
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVR-KLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
+ G +V+L NIY+ + RW + VR K N KK PG+SSI ++GV HEF+ GD +H
Sbjct: 612 NHIGCNVLLGNIYSTSGRWNEARMVREKNEINSDRKKIPGFSSIELNGVFHEFLVGDRSH 671
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDI-EEKEKEKFLYRHSEKLALTFGLMNTP 298
PQ+ +I+ ++++ +K+ GY+P VLLD +E++KE L HSEKLA+ FGLMNT
Sbjct: 672 PQSREIYSFLDEMISKLKIAGYVPELGEVLLDFDDEEDKETALSVHSEKLAIAFGLMNTA 731
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDY 351
PGTPIRI+KNLRVC DCH A K IS++ +R I+VRDR R+H F+ G CSC DY
Sbjct: 732 PGTPIRIVKNLRVCGDCHQATKFISKVYDRVIIVRDRMRYHHFKDGICSCKDY 784
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 3/164 (1%)
Query: 1 RVHEYSN--QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAI 58
RV + N S R+ NT+I YV G + A+ +F EM ER V +WS +I G
Sbjct: 328 RVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQ 387
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
G EAL F+KM++ +KPN T + L AC ++ +D+G ++ + I
Sbjct: 388 VGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQG-KWIHVYIRRDNIKMNDR 446
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++ G + A +K W A++GG +H
Sbjct: 447 LLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMH 490
>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 162/351 (46%), Positives = 238/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + ++GF + V N L+DMY+KCG L AR +F + E+ + +W+ MI G +HG
Sbjct: 347 IHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGY 406
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ +FN+M GI+P+ V+FI +L+AC H G +DEG FF M I P+ EHY
Sbjct: 407 GSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYA 466
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL+RAG L +AY+FI+ MPI+P+ +WGALL GCR++ ++ LAE+ + + +L+P
Sbjct: 467 CIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPE 526
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+V+L+NIYAEAE+WE+V ++R+ + G++K PG S I + G VH FV GD +HP
Sbjct: 527 NTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPL 586
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A KI + +K MK +G+ P L+ ++ EKE L HSEK+A+ FG+++ PPG
Sbjct: 587 ANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMAFGILSLPPGK 646
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+R+ KNLRVC DCH K +S++V R+I++RD NRFH F+ GSCSC +W
Sbjct: 647 TVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 697
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 2/144 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N L+DMY K G L A +VF M ER+V +W++MI G A G + ++ F++M + +
Sbjct: 263 NCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLF 322
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
PN +T +L AC + ++ G+ + G +VD+ + G L A
Sbjct: 323 PNSITMACILPACASLAALERGQE-IHGHILRNGFSLDRHVANALVDMYLKCGALGLARL 381
Query: 139 FIRNMPIKPNGVVWGALLGGCRVH 162
+P K + V W ++ G +H
Sbjct: 382 LFDMIPEK-DLVSWTVMIAGYGMH 404
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 81/179 (45%), Gaps = 22/179 (12%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H + + + + L+ MYV CG L RR+F ++ VF W+ ++ G A G
Sbjct: 122 RIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIG 181
Query: 61 QAKEALTSFNKMIEIGIK--------------PNGVTFIGLLHACGHMGWVDEGRRFFYS 106
+E+L+ F +M E+GI+ + +++ ++ G ++G F
Sbjct: 182 NFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQ 241
Query: 107 M-----TTEYGIIPQIEHY--GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
M T+ + +E C++D+ S++G L A + M + + V W +++ G
Sbjct: 242 MLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGER-SVVSWTSMIAG 299
>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 227/352 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H G+ ++ V N +I MY KCG +E A VF+ M + +W++MI L HG
Sbjct: 446 QLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHG 505
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+ F++M++ G+ P+ +TF+ +L AC H G V++GR +F SM YGI P +HY
Sbjct: 506 HGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHY 565
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
MVDL RAG A I +MP KP VW ALL GCR+H N+DL EA+ QL +L P
Sbjct: 566 ARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMP 625
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G +V+LSNIYA+ RW DVA+VRKLMR+ V+K P S I V+ VH F+ D+ HP
Sbjct: 626 QNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHP 685
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +++ E+L MK GYIP+T VL D+E ++KE L HSEKLA+ FG+M PP
Sbjct: 686 EVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPD 745
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+R+ KN+R+C DCH AFK +S++ REI+VRDR RFH F+ G CSC DYW
Sbjct: 746 ATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RNI N ++ YV G +E A+ F EM + + T + MI GLA +G E L F +M
Sbjct: 357 RNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQM 416
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
G +P F G L AC +G ++ GR+ ++ G + M+ + ++ G
Sbjct: 417 RLDGFEPCDFAFAGALTACSVLGALENGRQ-LHAQLVHLGYESSLSVGNAMISMYAKCGV 475
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASRQ 174
++ A MP + V W +++ H K I+L ++ ++
Sbjct: 476 VEAAESVFVTMP-SVDLVSWNSMIAALGQHGHGVKAIELFDQMLKE 520
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 16/179 (8%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+R+ T+I YV+ L GAR VF M E W+AMI G G +EALT K
Sbjct: 220 KRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRK 279
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGC------MV 124
M +GI+ + +T+ ++ AC ++G G++ Y + E H C ++
Sbjct: 280 MRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNEL----NPNHSFCLSVSNALI 335
Query: 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183
L + + EA + MP++ N + W A+L G + N EEA +++ P+ N
Sbjct: 336 TLYCKNNKVDEARKIFYAMPVR-NIITWNAILSG---YVNAGRMEEAKSFFEEM-PVKN 389
>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
gi|194689034|gb|ACF78601.1| unknown [Zea mays]
gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
Length = 606
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 166/352 (47%), Positives = 236/352 (67%), Gaps = 2/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+Y + G ++V L+DMY KCG LE A VF ME R WS MI A HG
Sbjct: 256 LHDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMESRDRQAWSVMIVAYANHGY 315
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA++ F +M + G+KP+ +TF+GLL+AC H G V EG R+F M ++GI+P I+HYG
Sbjct: 316 GREAISLFEEMKKQGMKPDDITFLGLLYACSHSGLVSEGLRYFDDMK-DHGIVPGIKHYG 374
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+ DLL+R+G L+ AY+FI +PI P ++W LL C H +++L + ++ +LD
Sbjct: 375 CVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDVELGKRVFERILELDDS 434
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G +V+ SN+ A WE++ RVRKLM + GV K PG SSI +D VHEF AGD HP+
Sbjct: 435 HGGDYVIFSNLCANTGYWEEMNRVRKLMSDKGVVKVPGCSSIEIDNTVHEFFAGDGRHPK 494
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVL-LDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+++ +M ++++D +KL GYIP+TS V +++ E+EK L HSEKLA+ FGL+NT PG
Sbjct: 495 SQEARKMVDEVIDQLKLVGYIPDTSHVFHVEMGEEEKAISLKYHSEKLAIAFGLLNTAPG 554
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+R++KNLRVC DCH+ K +S + NR I++RD NRFH F+ G CSCGDYW
Sbjct: 555 ATLRVVKNLRVCPDCHSMAKFVSMVFNRRIILRDLNRFHHFERGICSCGDYW 606
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 9/208 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H + + G + V TLI+MY +CG AR F + V +++AMI
Sbjct: 154 QAHAVAVKLGAAGHDYVRPTLINMYAECGDARAARVTFGRADGDCVVSYNAMIAAAVRSS 213
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EAL F +M G+ P VT I +L AC +G + G R+ + + G+ ++
Sbjct: 214 RPGEALVLFREMQAKGLNPTPVTVISVLSACALLGALQLG-RWLHDYVRKLGLGSLVKVS 272
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASRQ-- 174
+VD+ ++ G L++A + M + + W ++ H + I L EE +Q
Sbjct: 273 TALVDMYAKCGSLEDAIAVFQGMESR-DRQAWSVMIVAYANHGYGREAISLFEEMKKQGM 331
Query: 175 -LDQLDPLNNGYHVVLSNIYAEAERWED 201
D + L Y S + +E R+ D
Sbjct: 332 KPDDITFLGLLYACSHSGLVSEGLRYFD 359
>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
Length = 1024
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 156/352 (44%), Positives = 233/352 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH ++G+ VCN LI MY KCG + A + F+E+ + +W+A+I + HG
Sbjct: 673 QVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHG 732
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL SF++MI ++PN VT +G+L AC H+G VD+G +F SM +EYG+ P+ EHY
Sbjct: 733 FGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHY 792
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VD+L+RAG L A EFI+ MPIKP+ +VW LL C VHKN+++ E A+ L +L+P
Sbjct: 793 VCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEP 852
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+LSN+YA +++W+ R+ M+ GVKK PG S I V +H F GD+ HP
Sbjct: 853 EDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHP 912
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
A++I + ++ L GY+ + +L +++ ++K+ ++ HSEKLA++FGL++ P
Sbjct: 913 LADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPAT 972
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PI +MKNLRVC DCHA K +S++ NREI+VRD RFH F+ G+CSC DYW
Sbjct: 973 VPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1024
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 5/173 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ F+ N VC+ LIDMY K G L+ A + I + V +W+ MI G +
Sbjct: 471 QIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYN 530
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ALT+F +M++ GI+ + V + AC + + EG++ ++ G +
Sbjct: 531 FDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-IHAQACVSGFSSDLPFQ 589
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR 173
+V L SR G ++E+Y N + W AL+ G + N EEA R
Sbjct: 590 NALVTLYSRCGKIEESYLAFEQTEAGDN-IAWNALVSGFQQSGN---NEEALR 638
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 76/147 (51%), Gaps = 2/147 (1%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF + VCN L+ +Y G L A +F M +R T++ +I GL+ G ++A+ F
Sbjct: 278 GFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELF 337
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+M G++P+ T L+ AC G + G++ ++ TT+ G + G +++L ++
Sbjct: 338 KRMHLDGLEPDSNTLASLVVACSADGTLFRGQQ-LHAYTTKLGFASNNKIEGALLNLYAK 396
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALL 156
++ A ++ ++ N V+W +L
Sbjct: 397 CADIETALDYFLETEVE-NVVLWNVML 422
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G N + L D Y+ G L GA +VF EM ERT+FTW+ MI+ LA
Sbjct: 66 KLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRN 125
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
E F +M+ + PN TF G+L AC + ++ G+
Sbjct: 126 LIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVC 185
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++DL SR GF+ A + +K + W A++ G
Sbjct: 186 NPLIDLYSRNGFVDLARRVFDGLRLKDHS-SWVAMISG 222
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 5/178 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + SGF ++ N L+ +Y +CG +E + F + E W+A++ G G
Sbjct: 572 QIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSG 631
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F +M GI N TF + A + +G++ +++ T+ G + E
Sbjct: 632 NNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQ-VHAVITKTGYDSETEVC 690
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++ + ++ G + +A + + K N V W A++ H EA DQ+
Sbjct: 691 NALISMYAKCGSISDAEKQFLEVSTK-NEVSWNAIINAYSKH---GFGSEALDSFDQM 744
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 4/185 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H G R + VCN LID+Y + G ++ ARRVF + + +W AMI GL+ +
Sbjct: 168 QIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNE 227
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA+ F M +GI P F +L AC + ++ G + + + + G
Sbjct: 228 CEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQ-LHGLVLKLGFSSDTYVC 286
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQ--LDQL 178
+V L G L A NM + + V + L+ G + A E ++ LD L
Sbjct: 287 NALVSLYFHLGNLISAEHIFSNMS-QRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGL 345
Query: 179 DPLNN 183
+P +N
Sbjct: 346 EPDSN 350
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 82/178 (46%), Gaps = 8/178 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y+ + GF N ++ L+++Y KC +E A F+E E V W+ M+ +
Sbjct: 370 QLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLD 429
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMT-TEYGIIPQIEH 119
+ + F +M I PN T+ +L C +G ++ G + + T + Q+
Sbjct: 430 DLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNF----QLNA 485
Query: 120 YGC--MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
Y C ++D+ ++ G L A++ + K + V W ++ G + D A RQ+
Sbjct: 486 YVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAGYTQYNFDDKALTTFRQM 542
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 167/354 (47%), Positives = 242/354 (68%), Gaps = 3/354 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME--ERTVFTWSAMIQGLAIH 59
+H Y +G + + L++MYVKCG +E A VF +++ ++ V+ W+AMI G AIH
Sbjct: 242 LHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIH 301
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G+ EAL FN+M GI+PN +TF +L AC + G V+EG+ F SM Y + P IEH
Sbjct: 302 GRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIEH 361
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YGCMVDLL R+G L EA E I+ MP+KP+ V+WGALL C +H++ L + L ++D
Sbjct: 362 YGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIHRDFLLGSQVGAHLVEVD 421
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
++G ++ L+ I A +W++ A VR M++LGV +PG SS+T++G+VHEF+AG + H
Sbjct: 422 SDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSVTLNGIVHEFLAGHQDH 481
Query: 240 PQAEKIFQMWEKLLDGMKL-KGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
PQ E+I +++ + ++ +GY P T +LLD+E +EKE + +HSEKLA+ FGL+NT
Sbjct: 482 PQMEQIQLKLKQIAERLRQDEGYEPATKDLLLDLENEEKETAMAQHSEKLAIAFGLINTK 541
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PGT IR++KNLR+C DCH KL+S+I +REI++RDR RFH F+ GSCSC DYW
Sbjct: 542 PGTTIRVIKNLRICRDCHTVAKLVSQIYSREIIMRDRVRFHHFRDGSCSCKDYW 595
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 79/147 (53%), Gaps = 6/147 (4%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N +ID Y+K G ++ A VF++M + V +W+++I GL GQ+ EAL+ +M G +
Sbjct: 158 NIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFE 217
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRF-FYSMTTEYGIIPQIEHYGC-MVDLLSRAGFLQEA 136
+GV LL AC ++G +D+GR FY + + I GC +V++ + G ++EA
Sbjct: 218 LDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVI---GCALVNMYVKCGDMEEA 274
Query: 137 YEFIRNMPIKPNGV-VWGALLGGCRVH 162
+ V +W A++ G +H
Sbjct: 275 LSVFGKLKGNQKDVYIWTAMIDGFAIH 301
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 31/160 (19%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88
G L A+RVF + F W+A+I+ + + + A S+ +M+ + N TF LL
Sbjct: 36 GDLLYAQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLL 95
Query: 89 HACGHMGWVDE-------------GRRFF--------YSMTTE-------YGIIPQIE-- 118
AC ++ + E G F Y++ E + IP+ +
Sbjct: 96 RACRNLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAV 155
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ M+D ++G ++ AY +MP+K N V W +L+ G
Sbjct: 156 SWNIMIDGYIKSGDVKTAYGVFLDMPLK-NVVSWTSLISG 194
>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 701
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 167/351 (47%), Positives = 229/351 (65%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V Y + G+ N+ V LI MY CG L A RVF EM E+ + + M+ G IHG+
Sbjct: 351 VQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGR 410
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA++ F +M+ G+ P+ F +L AC H G VDEG+ FY MT +Y + P+ HY
Sbjct: 411 GREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYS 470
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL RAG+L EAY I NM +KPN VW ALL CR+H+N+ LA ++++L +L+P
Sbjct: 471 CLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPD 530
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+V LSNIYA RWEDV VR L+ ++K P +S + ++ +VH+F GD +H Q
Sbjct: 531 GVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQ 590
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++ I+ + L + +K GY P+TS+VL D+EE+ KEK L+ HSE+LAL F L+NT PGT
Sbjct: 591 SDDIYAKLKDLNEQLKKAGYKPDTSLVLYDVEEEIKEKMLWDHSERLALAFALINTGPGT 650
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI KNLRVC DCH K+IS++ NREI++RD RFH F+ G CSCG YW
Sbjct: 651 TIRITKNLRVCGDCHTVIKMISKLTNREIIMRDICRFHHFRDGLCSCGGYW 701
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 8/150 (5%)
Query: 2 VHEYSNQSGFRRNIRVCN-----TLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGL 56
+H Y ++G + RVCN ++IDMY C + AR++F + + V +W+++I G
Sbjct: 247 IHGYVVRNG--ESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGY 304
Query: 57 AIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ 116
G A +AL F +M+ +G P+ VT I +L AC + + G S + G +
Sbjct: 305 EKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGAT-VQSYVVKRGYVVN 363
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIK 146
+ ++ + + G L A MP K
Sbjct: 364 VVVGTALIGMYANCGSLVCACRVFDEMPEK 393
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 3/160 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH G ++ V N+++ MY K G +E AR VF M R + +W+ M+ G +G
Sbjct: 145 KVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNG 204
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF--FYSMTTEYGIIPQIE 118
+A+ A F M G + T + LL ACG + + G+ + E G +
Sbjct: 205 EARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGF 264
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ + A + + +K + V W +L+ G
Sbjct: 265 LMNSIIDMYCNCESVSCARKLFEGLRVK-DVVSWNSLISG 303
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 126/308 (40%), Gaps = 56/308 (18%)
Query: 1 RVHEYSNQSG-FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
++H + G RRN + L Y CG + A+ +F ++ + F W++MI+G A +
Sbjct: 43 QLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACN 102
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF---------------- 103
AL + KM+ G KP+ T+ +L ACG + + GR+
Sbjct: 103 NSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVG 162
Query: 104 --FYSMTTEYG------------IIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNG 149
SM ++G ++ + + M+ + G + A+E +M + +G
Sbjct: 163 NSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDM--RRDG 220
Query: 150 VVWG-----ALLGGCRVHKNIDLAEEASRQL---DQLDPLNNGYHVVLSNIYAEAERWED 201
V ALL C ++ + +E + + + NG+ ++++I E
Sbjct: 221 FVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGF--LMNSIIDMYCNCES 278
Query: 202 VARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGY 261
V+ RKL L VK W+S+ ++G E A FQ E L M + G
Sbjct: 279 VSCARKLFEGLRVKDVVSWNSL---------ISGYEKCGDA---FQALE-LFGRMVVVGA 325
Query: 262 IPNTSVVL 269
+P+ V+
Sbjct: 326 VPDEVTVI 333
>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
Length = 813
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 173/343 (50%), Positives = 233/343 (67%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G +CN LIDMY KCG ++ +R+VF M R + +W+ MI G IHG KEA F
Sbjct: 471 GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALF 530
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+M +G P+GVTFI LL AC H G V EG+ +F+ M YG+ P++EHY CMVDLLSR
Sbjct: 531 LEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSR 590
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
GFL EAYEFI++MP++ + VW ALLG CRV+KNIDL ++ SR + +L P G V+L
Sbjct: 591 GGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLL 650
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
SNIY+ A R+++ A VR + + G KK+PG S I ++G +H FV GD++HPQ+ +I++
Sbjct: 651 SNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYREL 710
Query: 250 EKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNL 309
+ +L G+K GY P+TS VL D+EE+EKEK L HSEKLA+ +G+++ I + KNL
Sbjct: 711 DNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNL 770
Query: 310 RVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
RVC DCH K IS + R I+VRD NRFH F+ G CSCGD+W
Sbjct: 771 RVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 813
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 91/181 (50%), Gaps = 5/181 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SG ++ N+L+ MY K G ++ A +F EM + ++SA++ G +G
Sbjct: 361 QLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNG 420
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+EA F KM ++P+ T + L+ AC H+ + GR S+ G+ +
Sbjct: 421 RAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASETSIC 479
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
++D+ ++ G + + + MP + + V W ++ G +H L +EA+ +++
Sbjct: 480 NALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIH---GLGKEATALFLEMNN 535
Query: 181 L 181
L
Sbjct: 536 L 536
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 12/168 (7%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ +G + ++ V L+DMYVKC CL A +F M R + W+AM+ G A HG
Sbjct: 147 IHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGM 206
Query: 62 AKEALTSF--NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRR---------FFYSMTTE 110
A+ +M ++PN T + LL G + +G + ++
Sbjct: 207 YHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSK 266
Query: 111 YGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ + ++D+ ++ G L A MP + N V W AL+GG
Sbjct: 267 SKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR-NEVTWSALIGG 313
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 7/156 (4%)
Query: 6 SNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEA 65
+++S + + L+DMY KCG L ARRVF M R TWSA+I G + + +A
Sbjct: 264 NSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQA 323
Query: 66 LTSFNKMIEIG---IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC 122
F M+ G + P + L AC + + G + +++ + G+ +
Sbjct: 324 FLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMGEQ-LHALLAKSGVHADLTAGNS 380
Query: 123 MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + ++AG + +A M +K + V + AL+ G
Sbjct: 381 LLSMYAKAGLIDQAIALFDEMAVK-DTVSYSALVSG 415
>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
Length = 779
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 171/343 (49%), Positives = 235/343 (68%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G +CN+LIDMY KCG ++ +R+VF +M R + +W+ MI G IHG KEA T F
Sbjct: 437 GLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLF 496
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
M G +P+ VTFI L+ AC H G V EG+ +F +MT +YGI+P++EHY CMVDLL+R
Sbjct: 497 LSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLAR 556
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
GFL EAY+FI++MP+K + VWGALLG CR+HKNIDL ++ SR + +L P G V+L
Sbjct: 557 GGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLL 616
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
SNI++ A R+++ A VR + + G KK+PG S I ++G +H FV GD++HP + I+
Sbjct: 617 SNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSPDIYHEL 676
Query: 250 EKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNL 309
+ +L +K GY +TS VL D+EE+EKEK L HSEKLA+ FG+++ I + KNL
Sbjct: 677 DNILIDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNL 736
Query: 310 RVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
RVC DCH A K ++ + NR I+VRD NRFH F+ G CSCGD+W
Sbjct: 737 RVCGDCHTAIKYMTLVRNRTIIVRDANRFHHFKNGQCSCGDFW 779
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 85/172 (49%), Gaps = 5/172 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SG ++ N+L+ MY K G + A +F E+ + ++ A++ G +G
Sbjct: 327 QLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNG 386
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+EA F KM ++P+ T + L+ AC H+ + GR S+ G+ +
Sbjct: 387 KAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIR-GLALETSIC 445
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEAS 172
++D+ ++ G + + + MP + + V W ++ G +H L +EA+
Sbjct: 446 NSLIDMYAKCGRIDLSRQVFDKMPAR-DIVSWNTMIAGYGIH---GLGKEAT 493
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 14/165 (8%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ G ++ V LID+Y++C A VF +M R V W+AM+ G A HG
Sbjct: 121 IHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGM 180
Query: 62 AKEALTSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGR-------RFFYSMTTEYGI 113
A+ M + G++PN T + LL G + +G R + E +
Sbjct: 181 YHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVL 240
Query: 114 IPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
I ++D+ ++ L A M ++ N V W AL+GG
Sbjct: 241 IGT-----ALLDMYAKCKHLVYACRVFHGMTVR-NEVTWSALIGG 279
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 6/161 (3%)
Query: 2 VHEYSNQSGFRRN---IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAI 58
VH Y ++ +N + + L+DMY KC L A RVF M R TWSA+I G +
Sbjct: 223 VHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVL 282
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIG-LLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
+ EA F M+ G+ T + L C + + G + +++ + GI +
Sbjct: 283 CDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQ-LHALLAKSGIHADL 341
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + ++AG + EA + IK + + +GALL G
Sbjct: 342 TAGNSLLSMYAKAGLINEATMLFDEIAIK-DTISYGALLSG 381
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 2/141 (1%)
Query: 22 IDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNG 81
++ ++ G L AR+VF + ++A+I+ + G A+ + M+ + PN
Sbjct: 40 LEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNK 99
Query: 82 VTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIR 141
TF +L AC + + GR ++ G+ + ++DL R A
Sbjct: 100 YTFPFVLKACSALADLCAGRT-IHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFA 158
Query: 142 NMPIKPNGVVWGALLGGCRVH 162
MP++ + V W A+L G H
Sbjct: 159 KMPMR-DVVAWNAMLAGYANH 178
>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
Length = 605
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 168/353 (47%), Positives = 235/353 (66%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIH 59
VH + QSG + + ++ ++DMY KCGC+E A RVF + + + + TW+ MI G A+H
Sbjct: 253 VHRWVEQSGIQMDEKLATAVVDMYCKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVH 312
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G+ ++AL F +M G+ P+ VT + +L AC H G + EGR +F + YGI P++EH
Sbjct: 313 GRGEDALKLFGRMEREGVAPDDVTLVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEH 372
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YGCMVDL RAG L+EA + I++MP++P+ V GAL G ++H ++DL E ++ +LD
Sbjct: 373 YGCMVDLYGRAGRLEEAKKVIQDMPMEPDVGVLGALFGASKIHGDVDLGEAIGWRVIELD 432
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N+G +V+L+N+ A A RWEDVARVR+LM V K G S I V G V EF G H
Sbjct: 433 PQNSGRYVLLANLLATAGRWEDVARVRRLMDERNVSKEAGRSVIEVQGEVCEFQCGGLCH 492
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+AE+++ M ++ ++ +GY+P+T VL I E+EKE L HSEKLA+ FGL++T P
Sbjct: 493 PRAEEVYAMARDMMREIRAEGYVPDTRDVLHAIAEEEKETPLLYHSEKLAIAFGLLHTRP 552
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G +RI KNLRVC DCH A K +S + R+IVVRDRNRFH F+ G CSC DYW
Sbjct: 553 GDTMRITKNLRVCRDCHEATKFVSRVFERQIVVRDRNRFHHFKDGQCSCKDYW 605
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 2/145 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
T++ +K G + AR +F M ER + +W+AM+ G + +AL F++M G+
Sbjct: 169 TTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMRARGVD 228
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
N + AC G + GR + + GI + +VD+ + G ++EA+
Sbjct: 229 GNVFVAATAVVACTGAGALARGRE-VHRWVEQSGIQMDEKLATAVVDMYCKCGCVEEAWR 287
Query: 139 FIRNMPIKPNGV-VWGALLGGCRVH 162
+P+ G+ W ++GG VH
Sbjct: 288 VFEALPLAAKGLTTWNCMIGGFAVH 312
>gi|293334473|ref|NP_001170726.1| uncharacterized protein LOC100384813 [Zea mays]
gi|238007188|gb|ACR34629.1| unknown [Zea mays]
Length = 329
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 157/329 (47%), Positives = 226/329 (68%)
Query: 24 MYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVT 83
MY KCG ++ AR VF M +R +W++M+ G +HG+ KEAL F+KM + G P+ ++
Sbjct: 1 MYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDIS 60
Query: 84 FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM 143
F+ LL+AC H G VD+G +F M +Y ++ EHY C++DLL+R G L +A++ I+ M
Sbjct: 61 FLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEM 120
Query: 144 PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVA 203
P++P+ V+W ALL CRVH N++LAE A +L + N+G + ++SNIYA A RW+DVA
Sbjct: 121 PMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVA 180
Query: 204 RVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIP 263
R+R+LM+ G+KK PG S + F GD +HP + +I+ + E+L+ +K+ GY+P
Sbjct: 181 RIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVP 240
Query: 264 NTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAAFKLIS 323
T+ L D++++EK L HSEKLAL +GL+ T PG PIRI KNLRVC DCH+AF IS
Sbjct: 241 ETNFALHDVDDEEKNNLLSEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYIS 300
Query: 324 EIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+IV+ EI+VRD +RFH F+ GSCSCG YW
Sbjct: 301 KIVDHEIIVRDSSRFHHFKNGSCSCGGYW 329
>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
Length = 650
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 166/351 (47%), Positives = 237/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + G + V + L+ MY +CG LE +RVF +M++R V +W+++I +HG
Sbjct: 300 IHGYILRKGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGF 359
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K+A+ F +M G++P+ ++F+ +L AC H G VDEG+ F SM +GI P +EHY
Sbjct: 360 GKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYA 419
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RA L+EA + I NM I+P VWG+LLG CR+H N++LAE AS +L L+P
Sbjct: 420 CMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSLLGSCRIHCNVELAERASIRLFDLEPT 479
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V+L++IYAEA W+ V RV+KL+ G++K PG S I V ++ FV+ DE +P+
Sbjct: 480 NAGNYVLLADIYAEAGMWDGVKRVKKLLEARGLQKVPGRSWIEVKRKIYSFVSVDEVNPR 539
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E++ + KL +K +GY+P T VVL D++ EKE+ + HSEKLA+ FGL+N+ G
Sbjct: 540 MEQLHALLVKLSMELKEEGYVPQTKVVLYDLKAAEKERIVLGHSEKLAVAFGLINSSKGE 599
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI K+LR+CEDCH+ K IS+ N+EI+VRD NRFH F+ G CSCGDYW
Sbjct: 600 VIRITKSLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRDGVCSCGDYW 650
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 83/161 (51%), Gaps = 6/161 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH + ++GF ++ + LI+MY ++ AR+VF + RT++ ++A+ + L++ G
Sbjct: 91 RVHRHLLENGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAG 150
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHAC----GHMGWVDEGRRFFYSMTTEYGIIPQ 116
+E L + +M IGI + T+ +L AC + +++GR ++ +G
Sbjct: 151 HGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGRE-IHAHILRHGYDGY 209
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
+ +VD+ ++ G + A MP+K N V W A++
Sbjct: 210 VHIMTTLVDMYAKFGCVSNASCVFNQMPVK-NVVSWSAMIA 249
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 92/187 (49%), Gaps = 8/187 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G+ + + TL+DMY K GC+ A VF +M + V +WSAMI A +G+
Sbjct: 197 IHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGK 256
Query: 62 AKEALTSFNK-MIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
A EAL F + M+E + PN VT + +L AC + +++G R + G+ +
Sbjct: 257 AFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQG-RLIHGYILRKGLDSILPV 315
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASRQL 175
+V + +R G L+ M K + V W +L+ VH K I + EE +
Sbjct: 316 ISALVTMYARCGKLELGQRVFDQMD-KRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNG 374
Query: 176 DQLDPLN 182
+ P++
Sbjct: 375 VEPSPIS 381
>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
Length = 813
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 173/343 (50%), Positives = 233/343 (67%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G +CN LIDMY KCG ++ +R+VF M R + +W+ MI G IHG KEA F
Sbjct: 471 GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALF 530
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+M +G P+GVTFI LL AC H G V EG+ +F+ M YG+ P++EHY CMVDLLSR
Sbjct: 531 LEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSR 590
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
GFL EAYEFI++MP++ + VW ALLG CRV+KNIDL ++ SR + +L P G V+L
Sbjct: 591 GGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLL 650
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
SNIY+ A R+++ A VR + + G KK+PG S I ++G +H FV GD++HPQ+ +I++
Sbjct: 651 SNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYREL 710
Query: 250 EKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNL 309
+ +L G+K GY P+TS VL D+EE+EKEK L HSEKLA+ +G+++ I + KNL
Sbjct: 711 DNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNL 770
Query: 310 RVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
RVC DCH K IS + R I+VRD NRFH F+ G CSCGD+W
Sbjct: 771 RVCGDCHTVIKHISLLKRRAIIVRDANRFHHFKNGQCSCGDFW 813
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 91/181 (50%), Gaps = 5/181 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SG ++ N+L+ MY K G ++ A +F EM + ++SA++ G +G
Sbjct: 361 QLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNG 420
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+EA F KM ++P+ T + L+ AC H+ + GR S+ G+ +
Sbjct: 421 RAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASETSIC 479
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
++D+ ++ G + + + MP + + V W ++ G +H L +EA+ +++
Sbjct: 480 NALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIH---GLGKEATALFLEMNN 535
Query: 181 L 181
L
Sbjct: 536 L 536
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 12/168 (7%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ +G + ++ V L+DMYVKC CL A +F M R + W+AM+ G A HG
Sbjct: 147 IHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGM 206
Query: 62 AKEALTSF--NKMIEIGIKPNGVTFIGLLHACGHMGWVDEG--------RRFFYS-MTTE 110
A+ +M ++PN T + LL G + +G R +S ++
Sbjct: 207 YHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSK 266
Query: 111 YGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ + ++D+ ++ G L A MP + N V W AL+GG
Sbjct: 267 SKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR-NEVTWSALIGG 313
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 7/156 (4%)
Query: 6 SNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEA 65
+++S + + L+DMY KCG L ARRVF M R TWSA+I G + + +A
Sbjct: 264 NSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQA 323
Query: 66 LTSFNKMIEIG---IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC 122
F M+ G + P + L AC + + G + +++ + G+ +
Sbjct: 324 FLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMGEQ-LHALLAKSGVHADLTAGNS 380
Query: 123 MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + ++AG + +A M +K + V + AL+ G
Sbjct: 381 LLSMYAKAGLIDQAIALFDEMAVK-DTVSYSALVSG 415
>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
Length = 664
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 167/353 (47%), Positives = 240/353 (67%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V E + ++G RN+ V + L+DMY KCG ++ AR+VF M ++ V+T+S+MI GLA HG+
Sbjct: 312 VQEIAERNGLGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASHGR 371
Query: 62 AKEALTSFNKMIE-IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A + + FN M+ ++PN VTFIG+L AC H G V EGR +F M YGI+P +HY
Sbjct: 372 ANDVIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHY 431
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL+R+G + EA + +++M ++P+G VWGALLG CR+H N ++A+ A+ L +L+P
Sbjct: 432 ACMVDLLARSGLVTEALDLVKSMTVEPHGGVWGALLGACRIHGNTEVAKIAAEHLFRLEP 491
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSIT-VDGVVHEFVAGDETH 239
G +V+LSN A A W++V+++RKLMR G+KK P S DG VH+F AGD TH
Sbjct: 492 EGIGNYVLLSNTLASAGEWDEVSKLRKLMRIRGLKKDPAVSWFEGRDGFVHQFFAGDNTH 551
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P +I + +L + + L GY+P S V+ ++ E+EKE+ L HSEKLAL+FGL+
Sbjct: 552 PSMHEIKKRLLELREKLNLAGYVPILSSVVYNVSEEEKERLLMGHSEKLALSFGLLTLES 611
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ IRI+KNLR+CEDCH +L+S++ EI+VRD RFH F+ G CSCG +W
Sbjct: 612 RSSIRIVKNLRICEDCHLFIRLVSKVEPIEILVRDNMRFHHFRDGECSCGGFW 664
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 76/184 (41%), Gaps = 33/184 (17%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWS------------------- 50
GF ++ V N+LI YV CG + AR+VF EM + V +W+
Sbjct: 188 GFDKHRFVENSLISAYVACGDVGAARKVFDEMLVKDVISWTSIVVAYSRIRDMGSAEEVF 247
Query: 51 ------------AMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVD 98
AM+ G A + +AL +F +M G+ + V+ G + AC +G V
Sbjct: 248 ALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQLGAVK 307
Query: 99 EGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ + G+ + +VD+ ++ G + EA + M K N + +++ G
Sbjct: 308 RA-AWVQEIAERNGLGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDK-NVYTYSSMIVG 365
Query: 159 CRVH 162
H
Sbjct: 366 LASH 369
>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 168/348 (48%), Positives = 236/348 (67%), Gaps = 1/348 (0%)
Query: 6 SNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEA 65
S++ G N+ V + LIDMY KCG +E A VF M+E VF++S+MI G A+HG+A+ A
Sbjct: 269 SSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHGRARSA 328
Query: 66 LTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125
+ F +M+E GIKPN VTF+GL AC H G V++G++ F +M YG+ P +HY CM D
Sbjct: 329 IKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGVSPTADHYACMAD 388
Query: 126 LLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGY 185
LL RAG L++A + ++ MP++PNG VWGALLG +H N D+AE ASR L +L+P N G
Sbjct: 389 LLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVAEIASRSLFELEPDNLGN 448
Query: 186 HVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITV-DGVVHEFVAGDETHPQAEK 244
+++LS YA A +W+DV+RVRKLMR ++K PG S + +G++HEF AGD HP+ +
Sbjct: 449 YLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEAKNGIIHEFFAGDVKHPEINE 508
Query: 245 IFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIR 304
I + + LL +K GY P + V DI+++ K L HSEKLAL +GL++T G+ I+
Sbjct: 509 IKKALDDLLQRLKCTGYQPKLNSVPYDIDDEGKRCLLVSHSEKLALAYGLLSTDAGSTIK 568
Query: 305 IMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IMKNLR+CEDCH S++ R+I+VRD RFH F G+CSC ++W
Sbjct: 569 IMKNLRICEDCHIVMCGASKLTGRKIIVRDNMRFHHFLNGACSCNNFW 616
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 43/199 (21%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWS---------- 50
++H ++ GF ++ V NT+I MYVK G L+ AR+VF EM R V TW+
Sbjct: 130 QLHLHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSG 189
Query: 51 ---------------------AMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH 89
+M+ G + + K+AL F KM E G+ + +T +G +
Sbjct: 190 DMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAIS 249
Query: 90 ACGHMG------WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM 143
AC +G W+ E + ++ +G + ++D+ S+ G ++EAY + M
Sbjct: 250 ACAQLGVSGYADWIRE-----IAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGM 304
Query: 144 PIKPNGVVWGALLGGCRVH 162
+ N + +++ G VH
Sbjct: 305 K-EMNVFSYSSMIVGFAVH 322
>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
Length = 723
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 164/334 (49%), Positives = 225/334 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Q ++ + L+DMY+KCG ++ A VF M ER V TWSAMI GLA +G
Sbjct: 390 LHASIEQRIVEEDVYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFNGM 449
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+AL SF +M G +P VT+I +L AC H ++EGR+ F M + + + PQIEHYG
Sbjct: 450 GMDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLNEGRQHFNEMRSLHKLHPQIEHYG 509
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CM+DLL+R+G L EA ++ MP++PN V+W ++L CRVHKNIDLA A+ L +L P
Sbjct: 510 CMIDLLARSGLLDEAMHLVQTMPMQPNAVIWASILSACRVHKNIDLARHAAEHLLKLAPE 569
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ +V L NIY ++ +W + R+R LM GVKKT G+SSITV G VH+FV D++HP
Sbjct: 570 EDAVYVQLYNIYIDSRQWVEAKRIRMLMEEQGVKKTAGYSSITVAGQVHKFVVNDQSHPW 629
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I M E++ +K GY P TS + +D++E+EKE+ L HSEK+A+ FGL++ PP
Sbjct: 630 TLEIITMMEEIARRLKSAGYSPATSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPNL 689
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDR 335
PI IMKNLRVCEDCH+A KLIS++ NREI+VRDR
Sbjct: 690 PIHIMKNLRVCEDCHSAIKLISQLWNREIIVRDR 723
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 4/141 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N +ID Y K G ++ AR +F +M R V T+++MI G G+ ++AL F ++ G++
Sbjct: 306 NVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMR 365
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGFLQEAY 137
+ T + LL AC +G + +GR S+ E I+ + + +VD+ + G + EA
Sbjct: 366 ADNFTVVSLLTACASLGALPQGRALHASI--EQRIVEEDVYLVTALVDMYMKCGRVDEAT 423
Query: 138 EFIRNMPIKPNGVVWGALLGG 158
M + + W A++ G
Sbjct: 424 AVFHRMGER-DVHTWSAMIAG 443
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 98/197 (49%), Gaps = 6/197 (3%)
Query: 20 TLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP 79
T+I V+ G L+ ARR+ ++ ER V +W+++I G + G+ +A+ FN M+ G++P
Sbjct: 174 TVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEP 233
Query: 80 NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEF 139
+ V IG L AC + ++ G R + + + I + ++D+ ++ G + +A
Sbjct: 234 DEVAVIGALSACSKLKNLEFG-RLLHLLVGKKRIQMTDKLVVTLIDMYAKCGDIAQAQAV 292
Query: 140 IRNMPIKPNGVVWGALLGG-CRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAER 198
+ W ++ G C++ ++D+A Q+ D + ++ +++ Y + R
Sbjct: 293 FDAVGRGQKPEPWNVIIDGYCKL-GHVDIARSLFDQMGARDVIT--FNSMITG-YIHSGR 348
Query: 199 WEDVARVRKLMRNLGVK 215
D ++ +R G++
Sbjct: 349 LRDALQLFMQLRRHGMR 365
>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 170/352 (48%), Positives = 244/352 (69%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y +SGF+ + + LI+MY KCG ++ A RVF + ++ + W+++I GL +HG
Sbjct: 330 VHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGL 389
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++ L F++M G+KP+ +TFIG+L+AC H G+ ++ R+F MT +YGI P IEHYG
Sbjct: 390 VEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYG 449
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C++D+L RAG L+EA + I MPIK N V+W +LL G R H NI + E A++ L L P
Sbjct: 450 CLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPD 509
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
G +V+LSN+YA A WE V +VR++M+ G+KK PG SSI G +HEF+ GD++HPQ
Sbjct: 510 TTGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQ 569
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEE-KEKEKFLYRHSEKLALTFGLMNTPPG 300
E+I+ ++ + + G+IP+T+ VLL +EE EKE L HSE+LA+ FGL+N G
Sbjct: 570 TEEIYIKLCEMKKKLNVAGHIPDTTQVLLCLEEDNEKEAELETHSERLAIAFGLLNIKHG 629
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+PIRI+KNLR+C DCHA KL+S I NREI++RD +RFH F++GSCSC D+W
Sbjct: 630 SPIRIIKNLRICNDCHAVTKLLSHIYNREIIIRDGSRFHHFKSGSCSCKDFW 681
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 120/261 (45%), Gaps = 18/261 (6%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN N +I+ Y+K G A+ +F +M ER++ TW++MI G + Q +AL F M
Sbjct: 240 RNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVM 299
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ I PN T +G + A M + G R+ +S + G ++++ S+ G
Sbjct: 300 LREDISPNYTTILGAVSAASGMVSLGTG-RWVHSYIVKSGFKTDGVLGTLLIEMYSKCGS 358
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASRQLDQLDPLNNGYHVV 188
++ A R++P K G W +++ G +H + ++L +E R L P + V
Sbjct: 359 VKSALRVFRSIPKKKLG-HWTSVIVGLGMHGLVEQTLELFDEMCRT--GLKPHAITFIGV 415
Query: 189 LSNIYAEAERWEDVARVRKLMR-NLGVKKTPGWSSITVD-----GVVHEFVAGDETHP-Q 241
L N + A ED R K+M + G+K + +D G + E E P +
Sbjct: 416 L-NACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIK 474
Query: 242 AEKIFQMWEKLLDGMKLKGYI 262
A K+ +W LL G + G I
Sbjct: 475 ANKV--IWTSLLSGSRKHGNI 493
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 140/331 (42%), Gaps = 37/331 (11%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + GF + V ++L+ MY KCG +E R+VF ME++ V +W+++I G A G
Sbjct: 135 QIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCG 194
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ + AL F +M E + ++ L+ G ++ R F M + +
Sbjct: 195 EIELALEMFEEMPE----KDSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSV-----SW 245
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
M++ +AG A E MP + + V W +++ G +K A + + + D
Sbjct: 246 NAMINGYMKAGDSNTAKELFDQMPER-SLVTWNSMITGYERNKQFTKALKLFEVMLRED- 303
Query: 181 LNNGYHVVLSNIYAEA-------ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFV 233
++ Y +L + A + RW V+ + GV T + G V +
Sbjct: 304 ISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSAL 363
Query: 234 AGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTF- 292
+ P+ K W ++ G+ + G + T L++ ++ L H A+TF
Sbjct: 364 RVFRSIPK--KKLGHWTSVIVGLGMHGLVEQT----LELFDEMCRTGLKPH----AITFI 413
Query: 293 GLMNTPPGTPIRIMKNLRVCEDCHAAFKLIS 323
G++N + ED H FK+++
Sbjct: 414 GVLNA--------CSHAGFAEDAHRYFKMMT 436
>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
Length = 605
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 231/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH++ + R+I V +L+ MY KCG L+ A ++F EM + + W+AMI G A HG
Sbjct: 254 QVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHG 313
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++A+ F KM + G+ P+ +T + +L AC H G D G + F +M Y I PQ++HY
Sbjct: 314 GGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQVDHY 373
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG L+ A I +MP +P+ +G LL CRV+KN++ AE A+R+L + DP
Sbjct: 374 SCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDP 433
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +V L+NIYA A RW+DV+RVR+ M++ V KTPG+S + + GV HEF + D HP
Sbjct: 434 QNAGAYVQLANIYAVANRWDDVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHP 493
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q + I ++L MK GY P+ L D+EE K + L RHSEKLA+ FGL++T PG
Sbjct: 494 QLDLIHDKLDRLGKLMKAMGYSPDLDFALHDVEESLKSQMLMRHSEKLAIAFGLISTSPG 553
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+RI KNLR+C DCH A KLIS+I +REI++RD RFH F+ G CSCGDYW
Sbjct: 554 MTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 605
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 9/140 (6%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NTL+ + CG ++GA RVF M R V +W+ M+ GL+ +G +EA F M
Sbjct: 76 NTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAM----PA 131
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
N V++ ++ A G + F + + I + MV G +Q+A E
Sbjct: 132 RNAVSWNAMVAARASSGDMGAAENLFRNAPEKTDAI----LWTAMVSGYMDTGNVQKAME 187
Query: 139 FIRNMPIKPNGVVWGALLGG 158
+ R MP++ N V W A++ G
Sbjct: 188 YFRAMPVR-NLVSWNAVVAG 206
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 5/146 (3%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGI- 77
++ Y+ G ++ A F M R + +W+A++ G + +A +AL F M+E I
Sbjct: 170 TAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIV 229
Query: 78 KPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
+PN T +L C ++ + GR+ + M G I ++ + + G L +A
Sbjct: 230 QPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLG--RSITVGTSLLSMYCKCGDLDDA 287
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVH 162
+ M K + V W A++ G H
Sbjct: 288 CKLFDEMHTK-DIVAWNAMISGYAQH 312
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 101/255 (39%), Gaps = 25/255 (9%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ NT++ K G +E A +F M R +W+AM+ A G A F
Sbjct: 101 RDVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAVSWNAMVAARASSGDMGAAENLFRNA 160
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E K + + + ++ G V + +F +M + G + + SRAG
Sbjct: 161 PE---KTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKN--SRAGD 215
Query: 133 LQEAYE-FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV--VL 189
++ + + ++PN ++L GC + + + +L PL V L
Sbjct: 216 ALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKL-PLGRSITVGTSL 274
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
++Y + +D KL + K W+++ ++G H K +++
Sbjct: 275 LSMYCKCGDLDDAC---KLFDEMHTKDIVAWNAM---------ISGYAQHGGGRKAIKLF 322
Query: 250 EKLLDGMKLKGYIPN 264
EK MK +G +P+
Sbjct: 323 EK----MKDEGVVPD 333
>gi|357496515|ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355493561|gb|AES74764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 637
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 171/361 (47%), Positives = 240/361 (66%), Gaps = 11/361 (3%)
Query: 2 VHEYS-NQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
VH Y+ + G + V +L+DMY KCG + A VF M +R V W+AM+ GLA+HG
Sbjct: 278 VHCYAVKEMGLDFGVMVGTSLVDMYAKCGRINAALSVFRSMLKRNVVAWNAMLGGLAMHG 337
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
K A+ F M+E +KP+GVTF+ LL AC H G V++G +F+ + Y I P+IEHY
Sbjct: 338 MGKIAVDMFPSMVE-EVKPDGVTFMALLSACSHSGLVEKGWDYFHDLEPVYRIKPEIEHY 396
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMV LL RAG L+EA ++NM I PN VV G+L+G C H + L E+ R L ++DP
Sbjct: 397 ACMVGLLGRAGRLEEAEIMVKNMRIPPNEVVLGSLIGSCYAHGRLQLGEKIMRDLLEMDP 456
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
LN YH+VLSN+YA + + E +R++++ G+KK PG SSI VDG +H+F+AGD++H
Sbjct: 457 LNTEYHIVLSNMYALSGKVEKANSLRQVLKKRGIKKVPGMSSIYVDGKLHQFIAGDKSHT 516
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLL-------DIEE--KEKEKFLYRHSEKLALT 291
+ +I+ ++++ ++ GY+PNTS +L D E +E E+ L+ HSEKLAL
Sbjct: 517 RTSEIYMKLDEMICRLRSAGYVPNTSCQVLFGCSNRDDCSESLEEVEQVLFTHSEKLALC 576
Query: 292 FGLMNTPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDY 351
FGLM+TP G+P+ I KNLR+C+DCH+A K+ S++ REIVVRDR RFH F+ GSCSC DY
Sbjct: 577 FGLMSTPSGSPLHIFKNLRICQDCHSAIKIASKVYKREIVVRDRYRFHSFKHGSCSCSDY 636
Query: 352 W 352
W
Sbjct: 637 W 637
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 82/185 (44%), Gaps = 33/185 (17%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAI----------- 58
GF + +VCN L+++YVK G + AR++F +E R+V +WS ++GL
Sbjct: 153 GFVKFDKVCNALMNVYVKFGLVGEARKMFEGIEVRSVVSWSCFLEGLVKWESVESGRVLF 212
Query: 59 --------------------HGQAKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWV 97
+G KEA +M+ G + + VT +L AC G V
Sbjct: 213 DEMPERNEVAWTVMIVGYVGNGFTKEAFLLLKEMVFGCGFRLSFVTLCSVLSACSQSGDV 272
Query: 98 DEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
GR E G+ + +VD+ ++ G + A R+M +K N V W A+LG
Sbjct: 273 CVGRWVHCYAVKEMGLDFGVMVGTSLVDMYAKCGRINAALSVFRSM-LKRNVVAWNAMLG 331
Query: 158 GCRVH 162
G +H
Sbjct: 332 GLAMH 336
>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 973
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 162/336 (48%), Positives = 224/336 (66%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V +L+DMY KCG +E A +F M R+V W+AMI GLA HG A+EAL FN+M G
Sbjct: 638 VMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRG 697
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
+ P+ VTFIG+L AC H G + + F SM YG+ P+IEHY C+VD LSRAG +QEA
Sbjct: 698 VTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEA 757
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
+ + +MP + + ++ LL CRV + + E + +L +DP ++ +V+LSNIYA A
Sbjct: 758 EKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAA 817
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGM 256
+WE+ R +M+ + VKK PG+S I + VH FVAGD +H + + I+ E ++ +
Sbjct: 818 NQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMKRI 877
Query: 257 KLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCH 316
K +GY+P+T L+DIEE++KE L HSEKLA+ +GLM TPP T +R++KNLRVC DCH
Sbjct: 878 KEEGYVPDTEFALVDIEEEDKESALSYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCH 937
Query: 317 AAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
A K IS + REIV+RD NRFH F++G CSCGDYW
Sbjct: 938 NAIKYISNVFQREIVLRDANRFHHFRSGICSCGDYW 973
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 94/172 (54%), Gaps = 7/172 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + F ++ V + ++DMY+KCG ++ AR+VF ++ W+ +I G +G
Sbjct: 521 QIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENG 580
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYS-MTTEYGIIPQIEH 119
+ ++AL ++++M G++P+ TF L+ AC + +++G++ + M P +
Sbjct: 581 EEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFV-- 638
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
+VD+ ++ G +++AY R M + + +W A++ G H N AEEA
Sbjct: 639 MTSLVDMYAKCGNIEDAYGLFRRMNTR-SVALWNAMIVGLAQHGN---AEEA 686
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 8/189 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G+ + + V N+ I+MYVK G + ARR+F +M+E + +W+ +I G A G
Sbjct: 318 QIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSG 377
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +L F ++ G+ P+ T +L AC + R ++ + GI+
Sbjct: 378 LEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVS 437
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKN-------IDLAEEASR 173
++D+ S+ G ++EA N + W A++ G V N L E
Sbjct: 438 TALIDVYSKGGKMEEAELLFHNQD-GFDLASWNAMMHGFTVSDNYREALRLFSLMHERGE 496
Query: 174 QLDQLDPLN 182
+ DQ+ N
Sbjct: 497 KADQITFAN 505
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 20/168 (11%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + ++G + V LID+Y K G +E A +F + + +W+AM+ G +
Sbjct: 420 QVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSD 479
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR---------RFFYSMTTEY 111
+EAL F+ M E G K + +TF A G + + +G+ RF Y +
Sbjct: 480 NYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVIS 539
Query: 112 GIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
GI+ D+ + G ++ A + +P P+ V W ++ GC
Sbjct: 540 GIL----------DMYLKCGEMKSARKVFNQIP-SPDDVAWTTVISGC 576
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 67/164 (40%), Gaps = 10/164 (6%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAI 58
R H SG + V N LI MY KCG L AR++F +R + T++A++ A
Sbjct: 34 RTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAH 93
Query: 59 HGQ------AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYG 112
G+ EA F + + + T L C G + G
Sbjct: 94 TGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYG-SPSASEALQGYAVKIG 152
Query: 113 IIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
+ + G +V++ ++ ++EA MP++ + V+W ++
Sbjct: 153 LQWDVFVAGALVNIYAKFQRIREARVLFDRMPVR-DVVLWNVMM 195
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 5 YSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKE 64
Y+ + G + ++ V L+++Y K + AR +F M R V W+ M++ G E
Sbjct: 147 YAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDE 206
Query: 65 ALTSFNKMIEIGIKPNGVTFIGLLHACG 92
L F+ G++P+ V+ +L G
Sbjct: 207 VLGLFSAFHRSGLRPDCVSVRTILMGVG 234
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 171/350 (48%), Positives = 244/350 (69%), Gaps = 5/350 (1%)
Query: 2 VHEYSNQS--GFRRNIRVCNT-LIDMYVKCGCLEGARRVF-IEMEERTVFTWSAMIQGLA 57
+H Y N+ G N+ T LIDMY KCG ++ A++VF M R++ TW+AMI G A
Sbjct: 345 IHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFA 404
Query: 58 IHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
+HG+A A F++M GI+P+ +TF+GLL AC H G +D GR F SMT Y I P++
Sbjct: 405 MHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKL 464
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
EHYGCM+DLL +G +EA E I MP++P+GV+W +LL C++H N++L E +++L +
Sbjct: 465 EHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIK 524
Query: 178 LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGV-KKTPGWSSITVDGVVHEFVAGD 236
++P N+G +V+LSNIYA A RW +VA++R L+ + G+ KK PG SSI +D VVHEF+ GD
Sbjct: 525 IEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGD 584
Query: 237 ETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMN 296
+ HPQ +I+ M E++ ++ G++P+TS VL ++EE+ +E L HSEKLA+ FGL++
Sbjct: 585 KLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWREGALRHHSEKLAIAFGLIS 644
Query: 297 TPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSC 346
T PGT + IMKNLRVC++CH A KLIS+I REI+ RDR RF F+ G C
Sbjct: 645 TKPGTKLTIMKNLRVCKNCHEATKLISKIYKREIIARDRTRFXHFRDGVC 694
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 2/169 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + N GF N+++ N LID+Y K G +E A +F + + V +W+ +I G
Sbjct: 244 VHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNL 303
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY-GIIPQIEHY 120
KEAL F +M+ G PN VT + +L AC H+G +D GR + + G++ +
Sbjct: 304 YKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSL 363
Query: 121 -GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++D+ ++ G + A + + + W A++ G +H + A
Sbjct: 364 QTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAA 412
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 85/160 (53%), Gaps = 6/160 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ LI YV G +E A+++F E+ + V +W+AMI G G KEAL F +M
Sbjct: 153 RDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEM 212
Query: 73 IEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
+ + ++P+ T + ++ AC ++ GR +S ++G ++ ++DL S+ G
Sbjct: 213 MMMTNVRPDESTMVTVVSACAQSDSIELGRH-VHSWINDHGFASNLKIVNALIDLYSKFG 271
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
++ A E + K + + W L+GG + +++L +EA
Sbjct: 272 EVETACELFDGLWNK-DVISWNTLIGG---YTHMNLYKEA 307
>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Glycine max]
Length = 923
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 166/354 (46%), Positives = 233/354 (65%), Gaps = 5/354 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + GF + ++L+DMY CG +E +R++F +++R + W++MI +HG
Sbjct: 572 IHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGC 631
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ F KM + + P+ +TF+ LL+AC H G + EG+RFF M Y + P EHY
Sbjct: 632 GNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYA 691
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLLSR+ L+EAY+F+R+MPIKP+ VW ALLG C +H N +L E A+++L Q D
Sbjct: 692 CMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKELLQSDTK 751
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G + ++SNI+A RW DV VR M+ G+KK PG S I VD +H F+A D++HPQ
Sbjct: 752 NSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQ 811
Query: 242 AEKIF---QMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
+ I+ + KLL K GYI T V ++ E+EK + LYRHSE+LAL +GL+ TP
Sbjct: 812 TDDIYLKLAQFTKLLG--KKGGYIAQTKFVFHNVSEEEKTQMLYRHSERLALGYGLLVTP 869
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GT IRI KNLR+C+DCH FK+ SE+ R +VVRD NRFH F+ G CSCGD+W
Sbjct: 870 KGTSIRITKNLRICDDCHTFFKIASEVSQRALVVRDANRFHHFERGLCSCGDFW 923
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 16/165 (9%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIH 59
+H + + GF + VCN LI MY KCG L GAR +F I ME+ +W+++I
Sbjct: 167 IHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTE 226
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G+ EAL+ F +M E+G+ N TF+ L +V G +G + H
Sbjct: 227 GKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGI-------HGAALKSNH 279
Query: 120 YG------CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ ++ + ++ G +++A +M + + V W LL G
Sbjct: 280 FADVYVANALIAMYAKCGRMEDAERVFASMLCR-DYVSWNTLLSG 323
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
L+ MY KCG L+ A +VF EM ERT+FTW+AM+ G+ EA+ + +M +G+ +
Sbjct: 85 LLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAID 144
Query: 81 GVTFIGLLHACGHMG 95
TF +L ACG +G
Sbjct: 145 ACTFPSVLKACGALG 159
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 106/255 (41%), Gaps = 36/255 (14%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + +S ++ V N LI MY KCG +E A RVF M R +W+ ++ GL +
Sbjct: 270 IHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNEL 329
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMG---------------WVDEGRRFFYS 106
++AL F M KP+ V+ + L+ A G G +D + +
Sbjct: 330 YRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNT 389
Query: 107 MTTEYGIIPQIEHYG----CM--VDLLS----RAGFLQ-----EAYEFIRNMPIKPNGV- 150
+ Y ++H G CM DL+S AG+ Q EA R + +K V
Sbjct: 390 LIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVD 449
Query: 151 --VWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKL 208
+ G++L C K+ + E + + D + + N+Y E + R +
Sbjct: 450 PMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHRDYARRAFES 509
Query: 209 MRNLGVKKTPGWSSI 223
+R+ K W+S+
Sbjct: 510 IRS---KDIVSWTSM 521
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/155 (19%), Positives = 75/155 (48%), Gaps = 5/155 (3%)
Query: 11 FRRN---IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
F+R+ I + N ++++Y + G + ARR F + + + +W++MI +G EAL
Sbjct: 477 FKRDLADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALE 536
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F + + I+P+ + I L A ++ + +G+ + G + +VD+
Sbjct: 537 LFYSLKQTNIQPDSIAIISALSATANLSSLKKGKE-IHGFLIRKGFFLEGPIASSLVDMY 595
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ G ++ + + ++ + + ++W +++ +H
Sbjct: 596 ACCGTVENSRKMFHSVK-QRDLILWTSMINANGMH 629
>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
[Vitis vinifera]
Length = 657
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 163/352 (46%), Positives = 235/352 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++G + V ++LI MY +CGCLE + +VF+E E V WS+MI HG
Sbjct: 306 QIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHG 365
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EA+ FN+M + ++ N VTF+ LL+AC H G ++G +FF M +YG+ P++EHY
Sbjct: 366 RGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHY 425
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL R G ++EA IR+MP+K + + W LL C++HK ++A S ++ +LDP
Sbjct: 426 TCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFRLDP 485
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +V+LSNI+A +RW+DV+ VRK MR+ +KK PG S + V +H+F GD++HP
Sbjct: 486 RDPVPYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQIHQFCMGDKSHP 545
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++ +I +L MK +GY+P+ VL D++ ++KE L HSEKLA+ F L+ TP G
Sbjct: 546 KSVEIASYLRELTSEMKKRGYVPDIDSVLHDMDVEDKEYSLVHHSEKLAIAFALLYTPVG 605
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPIR++KNLRVC DCH A K ISEI NREI+VRD +RFH F+ G CSCGDYW
Sbjct: 606 TPIRVIKNLRVCSDCHVAIKYISEISNREIIVRDSSRFHHFKNGRCSCGDYW 657
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 93/196 (47%), Gaps = 7/196 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y + GF N+ V ++L MY+KCG L R+ M + V W+ +I G A +G
Sbjct: 205 QVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNG 264
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+E L +N M G +P+ +TF+ ++ +C + + +G++ ++ + G +
Sbjct: 265 YPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQ-IHAEVIKAGASLIVSVI 323
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNG--VVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++ + SR G L+ + + NG V W +++ H A + Q++Q
Sbjct: 324 SSLISMYSRCGCLEYSLKVFLEC---ENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQ- 379
Query: 179 DPLNNGYHVVLSNIYA 194
+ L LS +YA
Sbjct: 380 EKLEANDVTFLSLLYA 395
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 2/147 (1%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
R+NI CN LI+ Y + G AR++F EM ER V TW+AM+ GL +E L F++
Sbjct: 115 RKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSR 174
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M E+G P+ +L C + + GR+ + + G + + + + G
Sbjct: 175 MNELGFLPDEFALGSVLRGCAGLRALVAGRQ-VHGYVRKCGFEFNLVVVSSLAHMYMKCG 233
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGG 158
L E IR MP + N V W L+ G
Sbjct: 234 SLGEGERLIRAMPSQ-NVVAWNTLIAG 259
>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 997
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 158/336 (47%), Positives = 229/336 (68%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V +L+DMY KCG ++ A +F +E + W+AM+ GLA HG+ KEAL F +M +G
Sbjct: 662 VGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLG 721
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
IKP+ VTFIG+L AC H G V E ++ SM +YGI P+IEHY C+ D L RAG ++EA
Sbjct: 722 IKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEA 781
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
I +M ++ + ++ LL CRV + + + + +L +L+PL++ +V+LSN+YA A
Sbjct: 782 ENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAA 841
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGM 256
+W+++ R +M+ VKK PG+S I V +H FV D ++PQ E I++ + ++ +
Sbjct: 842 SKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQTELIYKKVKDMIRDI 901
Query: 257 KLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCH 316
K +GY+P T L+D+EE+EKE+ LY HSEKLA+ FGL++TPP TPIR++KNLRVC DCH
Sbjct: 902 KQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCH 961
Query: 317 AAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
A K IS++ +REIV+RD NRFH F+ G CSCGDYW
Sbjct: 962 NAMKYISKVYDREIVLRDANRFHRFKDGICSCGDYW 997
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 102/217 (47%), Gaps = 4/217 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y+ +SG+ ++ V + ++DMYVKCG + A+ F + W+ +I G +G
Sbjct: 545 QVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENG 604
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ + AL F++M +G+ P+ T L A + +++GR+ ++ +
Sbjct: 605 EEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQ-IHANALKLNCTSDPFVG 663
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL-- 178
+VD+ ++ G + +AY + + + N W A+L G H A + +Q++ L
Sbjct: 664 TSLVDMYAKCGSIDDAYCLFKRIEMM-NITAWNAMLVGLAQHGEGKEALQLFKQMESLGI 722
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVK 215
P + VLS E +R + R+ G+K
Sbjct: 723 KPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIK 759
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 10/160 (6%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA-----KEALTSFNK 71
+ N LI MY KCG L ARRVF +M ER + +W++++ A + KEA F
Sbjct: 83 LVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRI 142
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
+ + + + +T +L C H G+V F+ + G+ G +V++ + G
Sbjct: 143 LRQDVVYTSRMTLSPMLKLCLHSGYVCASES-FHGYACKIGLDGDDFVAGALVNIYLKFG 201
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
++E MP + + V+W +L + + + EEA
Sbjct: 202 KVKEGRVLFEEMPYR-DVVLWNLML---KAYLEMGFKEEA 237
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + G + V N+LI+MY K + AR VF M ER + +W+++I G+A
Sbjct: 343 QVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSD 402
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM 94
EA+ F +++ G+KP+ T +L A +
Sbjct: 403 LEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSL 436
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H Y+ + G + V L+++Y+K G ++ R +F EM R V W+ M++ G
Sbjct: 175 HGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFK 234
Query: 63 KEALTSFNKMIEIGIKPNGVTF 84
+EA+ + G+ PN +T
Sbjct: 235 EEAIDLSSAFHTSGLHPNEITL 256
>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
Length = 698
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 156/353 (44%), Positives = 236/353 (66%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERT-VFTWSAMIQGLAIH 59
++H + +S ++ V N +I MY + G ARR+F ++ R TW++MI LA H
Sbjct: 346 QIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQH 405
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
GQ +EA+ F +M+ G++P+ +T++G+L AC H G+V+EG+R++ + E+ I P++ H
Sbjct: 406 GQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSH 465
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CMVDLL+RAG EA EFIR MP++P+ + WG+LL CRVHKN +LAE A+ +L +D
Sbjct: 466 YACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSID 525
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N+G + ++N+Y+ RW D AR+ K + V+K G+S + +H F A D H
Sbjct: 526 PNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVH 585
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
PQ + ++ M ++ + +K G++P+ VL D++++ KE+ L RHSEKLA+ FGL++TP
Sbjct: 586 PQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPE 645
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T +R+MKNLRVC DCHAA K IS++ +REI+VRD RFH F+ G CSC DYW
Sbjct: 646 KTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 698
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N+ L++ YVK G +E AR +F M R V W+AMI G +G+ EA+ F MI
Sbjct: 258 NVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMI 317
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRF 103
G +PN T +L C + +D G++
Sbjct: 318 TCGPEPNSYTLAAVLSVCASLACLDYGKQI 347
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 36/192 (18%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRV----------------------- 37
+VH + + G + V N++++MY KCG E A V
Sbjct: 79 KVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLG 138
Query: 38 --------FIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI-EIGIKPNGVTFIGLL 88
F M +R++ +W+AMI G +G +AL F++M+ E + P+ T +L
Sbjct: 139 RMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVL 198
Query: 89 HACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFI-RNMPIK 146
AC ++G V G++ Y + TE Q+ + ++ +++G ++ A + ++M
Sbjct: 199 SACANLGNVRIGKQVHAYILRTEMAYNSQVTN--ALISTYAKSGSVENARRIMDQSMETD 256
Query: 147 PNGVVWGALLGG 158
N + + ALL G
Sbjct: 257 LNVISFTALLEG 268
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 2/147 (1%)
Query: 24 MYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVT 83
M+ K G L AR VF EM ER +W+ M+ GL G+ EA+ + M G P T
Sbjct: 1 MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60
Query: 84 FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM 143
+L +C GR+ +S + G+ + ++++ + G + A M
Sbjct: 61 LTNVLSSCAVTQAGAVGRK-VHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERM 119
Query: 144 PIKPNGVVWGALLGGCRVHKNIDLAEE 170
P++ W A++ +DLAE
Sbjct: 120 PVRSVS-SWNAMVSLNTHLGRMDLAES 145
>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
gi|194695290|gb|ACF81729.1| unknown [Zea mays]
Length = 539
Score = 347 bits (891), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 157/352 (44%), Positives = 233/352 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++G + + V +L+ MY +CGCL + RV +E + SAMI HG
Sbjct: 188 QIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHG 247
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++A+ F +M+ G +PN VTF+ LL+AC H G DEG F MT YG+ P ++HY
Sbjct: 248 HGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHY 307
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL R+G L EA + I +MP++P+GV+W LL C+ K D+AE + ++ +LDP
Sbjct: 308 TCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDP 367
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+LSNI A + RWEDV++VR+ MR V+K PG S + + G +H+F GDE+H
Sbjct: 368 HDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHS 427
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I + E+++ ++ GY P+ S+V D+E++EKE L HSEKLA+ F ++ P G
Sbjct: 428 RQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLSLPEG 487
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+MKNLRVC+DCH A KL+S+++ REIVVRD +RFH F+ G CSCGDYW
Sbjct: 488 VPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 539
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 1/126 (0%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N LI YVK G LE AR++F EM R V TW+AM+ GL G +E+L F M G++
Sbjct: 4 NILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQ 63
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ L C + V GR+ ++ G+ + + + R GFL++
Sbjct: 64 PDEYGLGSLFRCCAGLRDVVSGRQ-VHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEA 122
Query: 139 FIRNMP 144
+R +P
Sbjct: 123 ALRALP 128
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 68/136 (50%), Gaps = 1/136 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y +SG R++ V ++L MY++CG L + + + + I G +G
Sbjct: 87 QVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIVSCNTTISGRTQNG 146
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A+ AL F M G++ N VTF+ + +C + + +G++ +++ + G+ +
Sbjct: 147 DAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQ-IHALAIKTGVDKVVPVM 205
Query: 121 GCMVDLLSRAGFLQEA 136
+V + SR G L ++
Sbjct: 206 TSLVHMYSRCGCLGDS 221
>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 544
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 238/352 (67%), Gaps = 4/352 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + R + + L+DMY KCG +E A VF + R TW+AMI GLA++G
Sbjct: 196 VHVFVEKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLRARNTCTWNAMINGLAMNGY 255
Query: 62 AKEALTSFNKM-IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +AL F +M + + P+ VTF+G+L AC H G+VD G+ FY++ +YG+ +EHY
Sbjct: 256 SAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGVELILEHY 315
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL+R+G LQEA++ I MP+KP+ VVW ALLGGCR+HKN+ +AE + +++
Sbjct: 316 ACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKNVKMAENV---ISEMEA 372
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+G HV+LSN+YA RW V VR+ MR+ G++K PG SS+ +DG +HEF++GD++HP
Sbjct: 373 TCSGDHVLLSNLYAAVGRWNGVEDVRRTMRSKGIEKIPGCSSVEMDGSIHEFISGDKSHP 432
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ I ++ M+ GY+ T+ V DIE++EKE+ L HSEKLA+ FGL+ PP
Sbjct: 433 SYDDIHAKLIEIGGRMQQHGYVTETAEVFYDIEDEEKEQALGYHSEKLAIAFGLIGGPPE 492
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLR C DCH+ KL+S+I +REIVVRDR RFH F+ G+CSC D+W
Sbjct: 493 ATIRIVKNLRFCTDCHSFAKLVSKIYHREIVVRDRARFHHFRGGACSCNDFW 544
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 4/159 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
+++ + + G +E ARRVF EM ER + +W+AMI G + EAL F M+E G
Sbjct: 112 TSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFV 171
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG-CMVDLLSRAGFLQEAY 137
PN T + +L AC G ++ G+ + + E + E G +VD+ ++ G ++ A
Sbjct: 172 PNRGTVVSVLSACTGAGALETGK--WVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELAL 229
Query: 138 EFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLD 176
E + + N W A++ G ++ A + RQ++
Sbjct: 230 EVFTGLRAR-NTCTWNAMINGLAMNGYSAKALDMFRQME 267
>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 586
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 167/355 (47%), Positives = 238/355 (67%), Gaps = 5/355 (1%)
Query: 2 VHEYSNQSGF---RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAI 58
VH Y F R N+ + L+DMY KCGC+E A +VF + R V W+AMI GLA+
Sbjct: 233 VHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAM 292
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+G + AL F +M++ G PN TFI +L AC H G VDEG+R F SM +YGI PQ E
Sbjct: 293 NGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQ-DYGIKPQRE 351
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
HYGC+ DLL RAG ++EA + +MP++P+ WGAL+ C++H +I++ E ++L +L
Sbjct: 352 HYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERVGKRLIEL 411
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
+P + G +VVL N+YA RWE+ +R++M + G KK G S I ++G+VHEF++GD
Sbjct: 412 EPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVHEFISGDTR 471
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKF-LYRHSEKLALTFGLMNT 297
HP KI+ + E + ++L GY+ +TS V++D++++E + L HSE+LAL FG++N
Sbjct: 472 HPLTRKIYALLEDIERRLQLIGYVKDTSQVIMDMDDEEDKGIALSYHSERLALAFGILNI 531
Query: 298 PPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P G PIRI+KNLRVC DCH KL+S++ REI+VRDR+RFH F+ G CSC DYW
Sbjct: 532 PQGVPIRIVKNLRVCRDCHVHSKLVSKLYEREIIVRDRHRFHVFRDGVCSCNDYW 586
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 100/200 (50%), Gaps = 4/200 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NT++ Y K G L AR VF M ER + +WSAM+ G+ EAL F++M+ +
Sbjct: 149 NTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFR 208
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY--GIIPQIEHYGCMVDLLSRAGFLQEA 136
P+ V + +L AC H+G V+ GR + T G + +VD+ + G +++A
Sbjct: 209 PDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDA 268
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL-NNGYHVVLSNIYAE 195
++ + + + V+W A++GG ++ + A E R++ Q + N + +
Sbjct: 269 WQVFDGVH-RRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTH 327
Query: 196 AERWEDVARVRKLMRNLGVK 215
R ++ RV K M++ G+K
Sbjct: 328 TGRVDEGKRVFKSMQDYGIK 347
>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
Length = 798
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 167/353 (47%), Positives = 238/353 (67%), Gaps = 3/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + F ++ + LI MY+KCG L+ A+RVF E + + W++MI G A HG
Sbjct: 355 VHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGL 414
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL F+ M G+ P+G+T+IG L AC + G V EGR F SMT I P EHY
Sbjct: 415 GEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYS 474
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL R+G ++EA++ I+NMP++P+ V+WGAL+G CR+H+N ++AE A+++L +L+P
Sbjct: 475 CMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPG 534
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDE-THP 240
N G +V+LS+IY RWED +++RK + + + K+PG S I D VH F +GD HP
Sbjct: 535 NAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHP 594
Query: 241 QAEKIFQMWEKLLDGMKLK-GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
+ I ++ EK LDG+ ++ GY + S VL DI+E++K L HSE+ A+ +GL+ P
Sbjct: 595 EHAAILRILEK-LDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPE 653
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIR+MKNLRVC DCH+A KLI++I +REIV+RD NRFH F+ G CSC DYW
Sbjct: 654 GMPIRVMKNLRVCGDCHSAIKLIAKITSREIVLRDANRFHHFKDGFCSCRDYW 706
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 2/148 (1%)
Query: 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
+ CN ++ + + G ++ A+ VF +M ER TWSAMI+ + EAL++F +M+
Sbjct: 267 VAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLW 326
Query: 75 IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ 134
G++PN + I +L C + +D GR +M + ++ + + G L
Sbjct: 327 RGVRPNYPSVISILTVCAALAVLDYGREVHAAM-LRCSFDMDVFAVSALITMYIKCGNLD 385
Query: 135 EAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+A K + V+W +++ G H
Sbjct: 386 KAKRVFHTFEPK-DIVMWNSMITGYAQH 412
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 9/145 (6%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN L+ + G + ARR+F EM +R V W+AM+ G G+ EA F++M
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
K N V++ ++ G V+ R+ F M + + M+ +AG
Sbjct: 201 ----PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEV-----SWTAMLVGYIQAGH 251
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLG 157
+++A E MP P ++G
Sbjct: 252 VEDAAELFNAMPEHPVAACNAMMVG 276
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 64/162 (39%), Gaps = 12/162 (7%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+RN+ +I Y + G + AR++F M ER +W+AM+ G G ++A FN
Sbjct: 202 KRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNA 261
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M E + +G G G VD + F M + M+ +
Sbjct: 262 MPEHPVAACNAMMVGF----GQRGMVDAAKTVFEKMRER-----DDGTWSAMIKAYEQNE 312
Query: 132 FLQEAYEFIRNM---PIKPNGVVWGALLGGCRVHKNIDLAEE 170
FL EA R M ++PN ++L C +D E
Sbjct: 313 FLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGRE 354
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 10/148 (6%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
F ++ +L+ YV+ G L A R+F +M ER +++ ++ GL G+ EA F+
Sbjct: 108 FPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFD 167
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
+M + + V + +L G + E R F M + + M+ ++
Sbjct: 168 EMPDRDV----VAWTAMLSGYCQAGRITEARALFDEMPKR-----NVVSWTAMISGYAQN 218
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGG 158
G + A + MP + N V W A+L G
Sbjct: 219 GEVNLARKLFEVMPER-NEVSWTAMLVG 245
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF 104
+V +++++++G HG +A+ F +M E N V++ LL G V+E RR F
Sbjct: 111 SVVSFTSLLRGYVRHGLLADAIRLFQQMPE----RNHVSYTVLLGGLLDAGRVNEARRLF 166
Query: 105 YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKN 164
M + + M+ +AG + EA MP K N V W A++ G +
Sbjct: 167 DEMPDR-----DVVAWTAMLSGYCQAGRITEARALFDEMP-KRNVVSWTAMISGYAQNGE 220
Query: 165 IDLAEEASRQLDQLDPLNN--GYHVVLSNIYAEAERWEDVARVRKLM 209
++LA R+L ++ P N + +L Y +A ED A + M
Sbjct: 221 VNLA----RKLFEVMPERNEVSWTAMLVG-YIQAGHVEDAAELFNAM 262
>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 751
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 155/342 (45%), Positives = 232/342 (67%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
F+R+ V +TL+DMY KCG + + ++F E+E W+ ++ + HG + A+ +FN
Sbjct: 410 FKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFN 469
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
MI G+KPN VTF+ LL C H G V++G +F SM YG++P+ EHY C++DLL RA
Sbjct: 470 GMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRA 529
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190
G L+EA +FI NMP +PN W + LG C++H +++ A+ A+ +L +L+P N+G HV+LS
Sbjct: 530 GKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAKFAADKLMKLEPENSGAHVLLS 589
Query: 191 NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWE 250
NIYA+ ++WEDV +RK++++ + K PG+S + + H F D +HPQ ++I++ +
Sbjct: 590 NIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNKTHVFGVEDWSHPQKKEIYEKLD 649
Query: 251 KLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLR 310
LLD +K GY+P T VL+D+++ KEK L+ HSE++A+ F L+ P G PI + KNLR
Sbjct: 650 NLLDQIKRIGYVPQTESVLIDMDDNLKEKLLHYHSERIAVAFSLLTCPTGMPIIVKKNLR 709
Query: 311 VCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
VC DCH+A K IS++ R I+VRD +RFH F GSCSCGDYW
Sbjct: 710 VCSDCHSALKFISKVTERNIIVRDISRFHHFSNGSCSCGDYW 751
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 96/195 (49%), Gaps = 5/195 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G N + N +++Y KCG L+ ++F +M +R + +W+++I G A +
Sbjct: 96 QLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNS 155
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +EAL+SF +M G +L AC +G + G + + + + G ++
Sbjct: 156 RFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQ-VHCLVVKCGFGCELFVG 214
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL-D 179
+ D+ S+ G L +A + MP K + V+W +++ G KN D + + + + D
Sbjct: 215 SNLTDMYSKCGELSDACKAFEEMPCK-DAVLWTSMIDG--FVKNGDFKKALTAYMKMVTD 271
Query: 180 PLNNGYHVVLSNIYA 194
+ HV+ S + A
Sbjct: 272 DVFIDQHVLCSTLSA 286
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 3/149 (2%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVF-IEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
GF + N L DMY K G + A VF I + ++ + +A+I G Q ++AL++
Sbjct: 307 GFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALST 366
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
F + GI+PN TF L+ AC + ++ G + + ++ +VD+
Sbjct: 367 FVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQ-LHGQVVKFNFKRDPFVSSTLVDMYG 425
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
+ G + + + P+ + W L+G
Sbjct: 426 KCGLFDHSIQLFDEIE-NPDEIAWNTLVG 453
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + GF + V + L DMY KCG L A + F EM + W++MI G +G
Sbjct: 197 QVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNG 256
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
K+ALT++ KM+ + + L AC + G+ ++ + G +
Sbjct: 257 DFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKS-LHATILKLGFEYETFIG 315
Query: 121 GCMVDLLSRAGFLQEA 136
+ D+ S++G + A
Sbjct: 316 NALTDMYSKSGDMVSA 331
>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
Length = 610
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 228/352 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH++ + RN+ V +L+ MY KCG L A +VF EM + + W+AMI G A HG
Sbjct: 259 QVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHG 318
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+ F KM + G+ P+ +T + +L AC H G D G + F +M Y I PQI+HY
Sbjct: 319 GGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHY 378
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG L+ A I +MP +P+ +G LL CRV+KN++ AE A+R+L + DP
Sbjct: 379 SCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDP 438
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +V L+NIYA A +W DV+RVR+ M++ V KTPG+S + + GV HEF + D HP
Sbjct: 439 QNAGAYVQLANIYAVANKWADVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHP 498
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q I ++L MK GY+P+ L D+E+ K + L RHSEKLA+ FGL++T PG
Sbjct: 499 QLGLIHDKLDRLQMLMKAMGYVPDLDFALHDVEDSLKSQMLMRHSEKLAIAFGLISTSPG 558
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+RI KNLR+C DCH A KLIS+I +REI++RD RFH F+ G CSCGDYW
Sbjct: 559 MTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 610
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 13/142 (9%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NTL+ + CG ++GARRVF M + V +W+ M+ GL+ +G ++EA F I
Sbjct: 81 NTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFR------IM 134
Query: 79 P--NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
P N V++ ++ A G + F + + I + MV G +Q+A
Sbjct: 135 PVRNAVSWNAMVAALACSGDMGAAEDLFRNAPEKTDAI----LWTAMVSGYMDTGNVQKA 190
Query: 137 YEFIRNMPIKPNGVVWGALLGG 158
EF MP++ N V W A++ G
Sbjct: 191 MEFFGAMPVR-NLVSWNAVVAG 211
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 3/145 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGI- 77
++ Y+ G ++ A F M R + +W+A++ G + +A +AL F M+E I
Sbjct: 175 TAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIV 234
Query: 78 KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAY 137
+PN T +L C ++ + GR+ + + + + ++ + + G L +A
Sbjct: 235 QPNASTLSSVLLGCSNLSALGFGRQ-VHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDAC 293
Query: 138 EFIRNMPIKPNGVVWGALLGGCRVH 162
+ M K + V W A++ G H
Sbjct: 294 KVFDEMSTK-DIVAWNAMISGYAQH 317
>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 804
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 156/353 (44%), Positives = 236/353 (66%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERT-VFTWSAMIQGLAIH 59
++H + +S ++ V N +I MY + G ARR+F ++ R TW++MI LA H
Sbjct: 452 QIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQH 511
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
GQ +EA+ F +M+ G++P+ +T++G+L AC H G+V+EG+R++ + E+ I P++ H
Sbjct: 512 GQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSH 571
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CMVDLL+RAG EA EFIR MP++P+ + WG+LL CRVHKN +LAE A+ +L +D
Sbjct: 572 YACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSID 631
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N+G + ++N+Y+ RW D AR+ K + V+K G+S + +H F A D H
Sbjct: 632 PNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVH 691
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
PQ + ++ M ++ + +K G++P+ VL D++++ KE+ L RHSEKLA+ FGL++TP
Sbjct: 692 PQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPE 751
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T +R+MKNLRVC DCHAA K IS++ +REI+VRD RFH F+ G CSC DYW
Sbjct: 752 KTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 2/159 (1%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
RRN+ N+L+ M+ K G L AR VF EM ER +W+ M+ GL G+ EA+ +
Sbjct: 95 RRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLD 154
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M G P T +L +C GR+ +S + G+ + ++++ + G
Sbjct: 155 MTADGFTPTQFTLTNVLSSCAVTQAGAVGRK-VHSFVVKLGLGSCVPVANSVLNMYGKCG 213
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
+ A MP++ W A++ +DLAE
Sbjct: 214 DSETATTVFERMPVRSVS-SWNAMVSLNTHLGRMDLAES 251
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N+ L++ YVK G +E AR +F M R V W+AMI G +G+ EA+ F MI
Sbjct: 364 NVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMI 423
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRF 103
G +PN T +L C + +D G++
Sbjct: 424 TCGPEPNSYTLAAVLSVCASLACLDYGKQI 453
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 36/192 (18%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRV----------------------- 37
+VH + + G + V N++++MY KCG E A V
Sbjct: 185 KVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLG 244
Query: 38 --------FIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI-EIGIKPNGVTFIGLL 88
F M +R++ +W+AMI G +G +AL F++M+ E + P+ T +L
Sbjct: 245 RMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVL 304
Query: 89 HACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFI-RNMPIK 146
AC ++G V G++ Y + TE Q+ + ++ +++G ++ A + ++M
Sbjct: 305 SACANLGNVRIGKQVHAYILRTEMAYNSQVTN--ALISTYAKSGSVENARRIMDQSMETD 362
Query: 147 PNGVVWGALLGG 158
N + + ALL G
Sbjct: 363 LNVISFTALLEG 374
>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
Length = 706
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 166/353 (47%), Positives = 238/353 (67%), Gaps = 3/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + F ++ + LI MY+KCG L+ A+RVF E + + W++MI G A HG
Sbjct: 355 VHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGL 414
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL F+ M G+ P+G+T+IG L AC + G V EGR F SMT I P EHY
Sbjct: 415 GEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYS 474
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL R+G ++EA++ I+NMP++P+ V+WGAL+G CR+H+N ++AE A+++L +L+P
Sbjct: 475 CMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPG 534
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDE-THP 240
N G +V+LS+IY RWED +++RK + + + K+PG S I D VH F +GD HP
Sbjct: 535 NAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHP 594
Query: 241 QAEKIFQMWEKLLDGMKLK-GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
+ I ++ EK LDG+ ++ GY + S VL DI+E++K L HSE+ A+ +GL+ P
Sbjct: 595 EHAAILRILEK-LDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPE 653
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIR+MKNLRVC DCH+A KLI++I +REI++RD NRFH F+ G CSC DYW
Sbjct: 654 GMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 52/93 (55%)
Query: 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
+ CN ++ + + G ++ A+ VF +M ER TWSAMI+ + EAL++F +M+
Sbjct: 267 VAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLW 326
Query: 75 IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM 107
G++PN + I +L C + +D GR +M
Sbjct: 327 RGVRPNYPSVISILTVCAALAVLDYGREVHAAM 359
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 9/145 (6%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN L+ + G + ARR+F EM +R V W+AM+ G G+ EA F++M
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
K N V++ ++ G V+ R+ F M + + M+ +AG
Sbjct: 201 ----PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEV-----SWTAMLVGYIQAGH 251
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLG 157
+++A E MP P ++G
Sbjct: 252 VEDAAELFNAMPEHPVAACNAMMVG 276
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 64/162 (39%), Gaps = 12/162 (7%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+RN+ +I Y + G + AR++F M ER +W+AM+ G G ++A FN
Sbjct: 202 KRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNA 261
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M E + +G G G VD + F M + M+ +
Sbjct: 262 MPEHPVAACNAMMVGF----GQRGMVDAAKTVFEKMCER-----DDGTWSAMIKAYEQNE 312
Query: 132 FLQEAYEFIRNM---PIKPNGVVWGALLGGCRVHKNIDLAEE 170
FL EA R M ++PN ++L C +D E
Sbjct: 313 FLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGRE 354
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF 104
+V +++++++G HG +A+ F +M E N V++ LL G V+E RR F
Sbjct: 111 SVVSFTSLLRGYVRHGLLADAIRLFQQMPE----RNHVSYTVLLGGLLDAGRVNEARRLF 166
Query: 105 YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKN 164
M + + M+ +AG + EA MP K N V W A++ G +
Sbjct: 167 DEMPDR-----DVVAWTAMLSGYCQAGRITEARALFDEMP-KRNVVSWTAMISGYAQNGE 220
Query: 165 IDLAEEASRQLDQLDPLNN--GYHVVLSNIYAEAERWEDVARVRKLM 209
++LA R+L ++ P N + +L Y +A ED A + M
Sbjct: 221 VNLA----RKLFEVMPERNEVSWTAMLVG-YIQAGHVEDAAELFNAM 262
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 10/148 (6%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
F ++ +L+ YV+ G L A R+F +M ER +++ ++ GL G+ EA F+
Sbjct: 108 FPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFD 167
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
+M + + V + +L G + E R F M + + M+ ++
Sbjct: 168 EMPDRDV----VAWTAMLSGYCQAGRITEARALFDEMPKR-----NVVSWTAMISGYAQN 218
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGG 158
G + A + MP + N V W A+L G
Sbjct: 219 GEVNLARKLFEVMPER-NEVSWTAMLVG 245
>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
mitochondrial [Vitis vinifera]
gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
Length = 610
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 165/353 (46%), Positives = 232/353 (65%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
++E++ + G NI V N +DM KCG ++ A +F EM +R V +WS +I G A++G+
Sbjct: 258 IYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGE 317
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM--TTEYGIIPQIEH 119
+++AL F++M G++PN VTF+ +L AC H G V+EG ++F M + + I P+ EH
Sbjct: 318 SEKALALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEH 377
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CMVDLL R+G L+EAY FI+ MPI+ + +WGALLG C +H+NI L + + L +L
Sbjct: 378 YACMVDLLGRSGHLEEAYNFIKIMPIEADPGIWGALLGACAIHQNIKLGQHVADLLFELA 437
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P YHV+LSN+YA A RW V +VR+ M+ G +K +SS+ +G +H GD++H
Sbjct: 438 PEIASYHVLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYGGDKSH 497
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
PQ+ I E LL MK GYIP T V D+E++EKE L HSEKLA+ F L+N P
Sbjct: 498 PQSASILAKLEDLLKQMKSMGYIPETDSVFHDVEDEEKESTLSTHSEKLAIAFSLINGSP 557
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+MKNLR+C DCH KL+S I REI++RD+NRFH F+ G CSC D+W
Sbjct: 558 KFPIRVMKNLRICGDCHTFCKLVSRITMREIIMRDKNRFHHFKNGICSCKDFW 610
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 2/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G V L+ MYVK G L A +F M ER + W+A+I G
Sbjct: 157 MHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLVAWNALIAVCVQTGF 216
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ +AL SF +M GIKP+ VT + L ACGH+G ++ G Y E GI I +
Sbjct: 217 SSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEE-IYEFAREEGIDSNIIVHN 275
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+D+ ++ G + +A MP + N + W ++GG V+
Sbjct: 276 ARLDMCAKCGDMDKAMNLFDEMPQR-NVISWSTVIGGYAVN 315
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 119/275 (43%), Gaps = 50/275 (18%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88
G + AR++F EM + F W+ +++G +G +A++ + KM +G++P+ TF ++
Sbjct: 83 GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142
Query: 89 HACGHMG--W---------VDEGRRFFYSMTTE-------YGIIPQIEH-YGCMV--DLL 127
AC + W V G F ++ TE +G + E +G MV DL+
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLV 202
Query: 128 S---------RAGFLQEAYEFIRNM---PIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
+ + GF +A + R M IKP+ V + L C ++ EE +
Sbjct: 203 AWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEI-YEF 261
Query: 176 DQLDPLNNGYHVVLSNIYAE-AERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVA 234
+ + +++ ++++ N + + D+ + L + + WS++ +
Sbjct: 262 AREEGIDS--NIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTV---------IG 310
Query: 235 GDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVL 269
G + ++EK ++ + MK +G PN L
Sbjct: 311 GYAVNGESEKALALFSR----MKNQGVQPNYVTFL 341
>gi|226530803|ref|NP_001148047.1| LOC100281656 [Zea mays]
gi|195615502|gb|ACG29581.1| selenium-binding protein-like [Zea mays]
Length = 597
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 160/353 (45%), Positives = 227/353 (64%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+V Y+ + G+ ++V N+LI MY++CGC++ A RVF +++V TW+AMI GLA +G
Sbjct: 245 QVWAYAEEHGYGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANG 304
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A++ F +MI + P+ TF G+L AC H G VDEG RFF M EYG+ P + HY
Sbjct: 305 FGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHY 364
Query: 121 GCMVDLLSRAGFLQEAYEFIRN-MPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
GC+VDL+ RAG L EAYEF+ N M + P+ +W LLG CR+H ++DL E L +L
Sbjct: 365 GCIVDLMGRAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVIGNLIELK 424
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
G +V+L N YA W V+ +RKLM+ G++ TPG +++ +G VHEF+A D+ H
Sbjct: 425 AQQAGDYVLLLNTYAAVGEWSKVSEIRKLMQEEGIQTTPGCTTVEHNGTVHEFIADDDAH 484
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ +I++ ++ +++ GY+PN S L D++ + KE L HSEKLA+ F L+ TP
Sbjct: 485 PRKVEIYENLSEIYKQLRIAGYVPNVSSELHDLDSEGKESALTYHSEKLAIAFALLVTPQ 544
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLRVC DCH K+ S I R ++VRDR RFH FQ G CSC DYW
Sbjct: 545 HRPIRLAKNLRVCVDCHNFTKMFSAIYRRIVIVRDRTRFHHFQGGKCSCNDYW 597
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 4/160 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H G R+ + +L+ Y G +GAR++F EM R W+ +I A +
Sbjct: 142 QLHANVVAEGHLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNR 201
Query: 61 QAKEALTSFNKM--IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+ K+AL F +M + +P+ VT I LL AC +G +D G + ++ E+G +++
Sbjct: 202 RTKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQ-VWAYAEEHGYGGELK 260
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + R G + +AY P K + V W A++ G
Sbjct: 261 VRNSLITMYLRCGCVDKAYRVFSGTPQK-SVVTWTAMISG 299
>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 654
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 168/351 (47%), Positives = 232/351 (66%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y + G + V NTLI MY +CG + +RVF M++R V +W+++I +HG
Sbjct: 304 VHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGL 363
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K+A+ F MI G+ P+ +TFI +L AC H G V+E + F SM +Y I P++EHY
Sbjct: 364 GKKAIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHYA 423
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+L RA L EA E I+NM KP VWG+LLG CR+H N++LAE AS L +L+P
Sbjct: 424 CMVDILGRANRLDEAIELIQNMDFKPGPTVWGSLLGSCRIHCNVELAERASAMLFELEPK 483
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V+LS+IYA++ W DV RVRK + + G++K P S I V ++ V+ +E +PQ
Sbjct: 484 NAGNYVLLSHIYAKSRMWNDVRRVRKQLESRGLQKIPSCSWIEVKRKIYSLVSIEEYNPQ 543
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E++ LL +K +GY+P T+VV D++E+EKE+ + HS KLA+ FGL+NT G
Sbjct: 544 IEELCAFLITLLTEIKNQGYVPQTNVVTYDLDEEEKERIVLGHSGKLAVAFGLINTSKGE 603
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI NLR+CEDCHA K +S+ NREI++RD NRFHCF+ G CSCGDYW
Sbjct: 604 IIRISNNLRLCEDCHAFMKFVSKFTNREILLRDVNRFHCFKDGVCSCGDYW 654
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 6/160 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH SG ++ + LI+MY G ++ A +VF E E+T+F W+A+ + LA+ +
Sbjct: 96 VHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDETREKTIFVWNAIFRALAMASR 155
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACG----HMGWVDEGRRFFYSMTTEYGIIPQI 117
++ L + +M IGI N T+ +L AC + + +G+ ++ +G +
Sbjct: 156 GEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPLRKGKE-IHAHILRHGYEGHV 214
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
++D+ +R G++ A MP K N V W A++
Sbjct: 215 HVMTTLLDVYARFGYVSYASSVFGAMPDK-NIVSWSAMIA 253
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 77/161 (47%), Gaps = 10/161 (6%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G+ ++ V TL+D+Y + G + A VF M ++ + +WSAMI A +
Sbjct: 201 IHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEM 260
Query: 62 AKEALTSFNKMI--EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+AL F M+ PN +T + +L AC + ++ G + ++ G+ +
Sbjct: 261 PMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHG-KLVHAYVLRRGLDSTLPV 319
Query: 120 YGCMVDLLSRAGFL---QEAYEFIRNMPIKPNGVVWGALLG 157
++ + R G + Q +++++ K + + W +L+
Sbjct: 320 LNTLITMYGRCGEISTGQRVFDYMK----KRDVISWNSLIS 356
>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 599
Score = 347 bits (890), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 235/352 (66%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+Y++ +GF N+ + +LI+MY +CG + AR VF M+ER V TW+AMI G +HG
Sbjct: 248 LHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGY 307
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++A+ F +M G +PN +TF+ +L AC H G +D+GRR F SM YG++P +EH
Sbjct: 308 GRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNV 367
Query: 122 CMVDLLSRAGFLQEAYEFIRN-MPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVD+ RAG L +AY+FI+ +P +P VW ++LG CR+H+N DL + + + ++P
Sbjct: 368 CMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEP 427
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G++V+LSNIYA A R + V VR +M +KK G+S+I ++ + F GD++HP
Sbjct: 428 ENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHP 487
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q I++ ++L+ GY+P ++ D+EE+E++ L HSEKLAL FGL+ T G
Sbjct: 488 QTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFGLLKTNQG 547
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLR+CEDCH+A K IS I +REI+VRD+ RFH F+ GSCSC DYW
Sbjct: 548 ETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 599
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 102/210 (48%), Gaps = 3/210 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G+ ++ V LI +Y K ++ A++VF M +RT+ W+++I G +G
Sbjct: 147 IHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGL 206
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+E++ F+ M+E G +P+ T + LL +C +G +D G + + G +
Sbjct: 207 PQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFG-CWLHDYADGNGFDLNVVLGT 265
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
++++ +R G + +A E +M + N V W A++ G +H A E ++ P
Sbjct: 266 SLINMYTRCGNVSKAREVFDSMKER-NVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPR 324
Query: 182 -NNGYHVVLSNIYAEAERWEDVARVRKLMR 210
NN V + + A + +D RV M+
Sbjct: 325 PNNITFVAVLSACAHSGLIDDGRRVFSSMK 354
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 72/159 (45%), Gaps = 4/159 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + SG R+ + LI + G + ARR+F + F + ++++ + G
Sbjct: 45 QVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFG 104
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEH 119
+ + + + +M+ G + TF ++ AC + + G+ + M YG ++
Sbjct: 105 FSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQ- 163
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ L ++A ++ A + MP + + W +L+ G
Sbjct: 164 -AALIALYAKASDMKVAKKVFDAMPQR-TIIAWNSLISG 200
>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 347 bits (890), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 175/353 (49%), Positives = 229/353 (64%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + ++ NI V + L+DMY KCG +E A R F EM ER + TW+AMI G A GQ
Sbjct: 231 VHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQ 290
Query: 62 AKEALTSFNKMI--EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
A A+T F++M + PN VTF+ +L AC G V+ G F SM YGI P EH
Sbjct: 291 ADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEH 350
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y C+VDLL RAG +++AY+FI+ MPI+P VWGALLG ++ +L + A+ L +LD
Sbjct: 351 YACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELD 410
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
PL++G HV+LSN++A A RWE+ VRK M+++G+KK G S IT VH F A D +H
Sbjct: 411 PLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSH 470
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
+ +I M KL M+ GYIP+TS L D+EE+EK ++ HSEK+AL FGL++ P
Sbjct: 471 ERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAFGLISIPA 530
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIRI KNLR+C DCH+A K IS IV REI+VRD N FH F+ CSC DYW
Sbjct: 531 GVPIRITKNLRICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 583
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 94/191 (49%), Gaps = 8/191 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + ++G ++ V + DMY K G E AR++F EM ER + TW+A + + G
Sbjct: 129 QVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEG 188
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +ALT+F + + GI+P +L AC + ++ G+ +++ + ++ I
Sbjct: 189 RYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVGKS-VHTLAVKACVVGNIFVG 247
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+VD+ + G +++A MP + N V W A++GG D+A + D
Sbjct: 248 SALVDMYGKCGSIEDAERAFDEMPER-NLVTWNAMIGGYAHQGQADMA------VTLFDE 300
Query: 181 LNNGYHVVLSN 191
+ G H V N
Sbjct: 301 MTCGSHRVAPN 311
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 4/156 (2%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
+ N L++MY K A+ + R+V TW+A+I G +G+ AL F+ M
Sbjct: 44 IYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDS 103
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMV-DLLSRAGFLQE 135
I+PN TF A G + G++ +++ + G I + GC D+ S+AG +E
Sbjct: 104 IQPNDFTFPCAFKASGSLRSPLVGKQ-VHALAVKAGQISDV-FVGCSAFDMYSKAGLTEE 161
Query: 136 AYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
A + MP + N W A L + D A A
Sbjct: 162 ARKMFDEMPER-NIATWNAYLSNSVLEGRYDDALTA 196
>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 663
Score = 347 bits (890), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 235/352 (66%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+Y++ +GF N+ + +LI+MY +CG + AR VF M+ER V TW+AMI G +HG
Sbjct: 312 LHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGY 371
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++A+ F +M G +PN +TF+ +L AC H G +D+GRR F SM YG++P +EH
Sbjct: 372 GRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNV 431
Query: 122 CMVDLLSRAGFLQEAYEFIRN-MPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVD+ RAG L +AY+FI+ +P +P VW ++LG CR+H+N DL + + + ++P
Sbjct: 432 CMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEP 491
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G++V+LSNIYA A R + V VR +M +KK G+S+I ++ + F GD++HP
Sbjct: 492 ENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHP 551
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q I++ ++L+ GY+P ++ D+EE+E++ L HSEKLAL FGL+ T G
Sbjct: 552 QTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFGLLKTNQG 611
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLR+CEDCH+A K IS I +REI+VRD+ RFH F+ GSCSC DYW
Sbjct: 612 ETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 663
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 102/210 (48%), Gaps = 3/210 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G+ ++ V LI +Y K ++ A++VF M +RT+ W+++I G +G
Sbjct: 211 IHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGL 270
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+E++ F+ M+E G +P+ T + LL +C +G +D G + + G +
Sbjct: 271 PQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFG-CWLHDYADGNGFDLNVVLGT 329
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
++++ +R G + +A E +M + N V W A++ G +H A E ++ P
Sbjct: 330 SLINMYTRCGNVSKAREVFDSMKER-NVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPR 388
Query: 182 -NNGYHVVLSNIYAEAERWEDVARVRKLMR 210
NN V + + A + +D RV M+
Sbjct: 389 PNNITFVAVLSACAHSGLIDDGRRVFSSMK 418
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 72/159 (45%), Gaps = 4/159 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + SG R+ + LI + G + ARR+F + F + ++++ + G
Sbjct: 109 QVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFG 168
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEH 119
+ + + + +M+ G + TF ++ AC + + G+ + M YG ++
Sbjct: 169 FSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQ- 227
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ L ++A ++ A + MP + + W +L+ G
Sbjct: 228 -AALIALYAKASDMKVAKKVFDAMPQR-TIIAWNSLISG 264
>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Brachypodium distachyon]
Length = 617
Score = 347 bits (889), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 166/352 (47%), Positives = 231/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH++ + R + +L+ MY KCG L+GA ++F EM R V W+AMI G A HG
Sbjct: 266 QVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAMISGYAHHG 325
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ F KM G++PN +TF+ +L AC H G D G + F M YGI +++HY
Sbjct: 326 DGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFGMQCFERMQEVYGIEARVDHY 385
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG L+ A IR+MP +P+ +G LL RV+KN++ AE A+ +L + +P
Sbjct: 386 SCMVDLLCRAGSLERAVSLIRSMPFQPHPSAYGTLLNASRVYKNMEFAEFAAGKLIEQNP 445
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +V L+NIYA A +W DV+RVR+ M++ V KTPG+S + ++GV+H F + D HP
Sbjct: 446 QNAGAYVQLANIYAVANQWADVSRVRRWMKDNAVVKTPGYSWVEINGVIHVFRSNDRLHP 505
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q I + +L + MK GY+P+ L D++E K + L RHSEKLA+ FGL++T PG
Sbjct: 506 QLSLIHERLCQLEERMKAMGYVPDLDFALHDVDESLKVQMLMRHSEKLAIAFGLLSTAPG 565
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+RI KNLRVC DCH A KLIS+I +REI++RD RFH F++G CSCGDYW
Sbjct: 566 ITLRIFKNLRVCGDCHTAAKLISKIEDREIILRDTTRFHHFRSGHCSCGDYW 617
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/258 (20%), Positives = 104/258 (40%), Gaps = 31/258 (12%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ NT++ + G + AR VF+ M R +W+AM+ A G A F
Sbjct: 113 RNVTSWNTMLSGLSRSGAVGEARAVFLAMPARNSISWNAMVSCFAHAGDMCAAEECFEDA 172
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ K N V + ++ G V++ +FF +M + + + +V +
Sbjct: 173 PD---KENAVLWTAMVSGYMDSGHVEKAMQFFEAMP-----VRSLVSWNAVVAGYVKNSR 224
Query: 133 LQEAY----EFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN--GYH 186
++A +R+ ++PN ++L GC + + + +L PL+
Sbjct: 225 AEDALWVFKTMVRDADVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKL-PLSRRVTAG 283
Query: 187 VVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIF 246
L ++Y + D+ KL + ++ W+++ + G H H +
Sbjct: 284 TSLVSMYCKC---GDLDGACKLFSEMRIRDVIAWNAM-ISGYAH--------HGDGREAI 331
Query: 247 QMWEKLLDGMKLKGYIPN 264
+++EK MK +G PN
Sbjct: 332 ELFEK----MKSQGVEPN 345
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEM--EERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
NTL+ + G + GAR +F M R V +W+ M+ GL+ G EA F M
Sbjct: 86 NTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGLSRSGAVGEARAVFLAM---- 141
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
N +++ ++ H G + F + + + MV +G +++A
Sbjct: 142 PARNSISWNAMVSCFAHAGDMCAAEECFEDAPDKENAVL----WTAMVSGYMDSGHVEKA 197
Query: 137 YEFIRNMPIKPNGVVWGALLGG 158
+F MP++ + V W A++ G
Sbjct: 198 MQFFEAMPVR-SLVSWNAVVAG 218
>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
Length = 721
Score = 347 bits (889), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 166/352 (47%), Positives = 238/352 (67%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + ++ + +++ V N LIDMY KCG ++ AR +F ++ R +W+A+I G ++HG
Sbjct: 370 QVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHG 429
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA+ FN M E KP+ +TF+G+L AC + G +DEG+++F SM +YGI P +EHY
Sbjct: 430 LGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHY 489
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMV L+ R+G L +A +FI ++P +P+ ++W ALLG C +H +++L +++++ +L+P
Sbjct: 490 TCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEP 549
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ HV+LSNIYA A RW +VA VRK M+ GVKK PG S I G VH F D +H
Sbjct: 550 RDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTVADTSHA 609
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ I M E L + GY P + VLLD+E+ EKE+ L+ HSE+LAL FGL+ P G
Sbjct: 610 DLKLINGMLEFLNMKTRKAGYSPQLNAVLLDVEDDEKERLLWLHSERLALAFGLVRMPAG 669
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLR+C DCH+ KLIS+IV R+I+VRD NRFH F+ GSCSC DYW
Sbjct: 670 CPIRIIKNLRICVDCHSVIKLISKIVGRDIIVRDMNRFHHFENGSCSCADYW 721
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 92/185 (49%), Gaps = 11/185 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ ++G ++ V N L+ Y KCGC+E + +F + +R +W+ +I G
Sbjct: 270 IHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGD 329
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHY 120
+ AL+ F+ M+ ++ VT+ +L AC + ++ G + + T YG +
Sbjct: 330 GERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYG--QDVAVG 387
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH-------KNIDLAEEASR 173
++D+ ++ G +++A F+ +M + V W A++ G +H K +L +E
Sbjct: 388 NALIDMYAKCGSIKDA-RFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKC 446
Query: 174 QLDQL 178
+ D+L
Sbjct: 447 KPDEL 451
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 6/158 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + G+ N + LID Y GC+ AR VF E+ + + +W+ MI A +
Sbjct: 68 VHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDC 127
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYS-MTTEYGIIPQIEHY 120
EAL F++M G KPN TF G+L AC + D G+ S + T Y + +
Sbjct: 128 FSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNY---ERDLYV 184
Query: 121 GC-MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
G +++L +R G +A+ +MP K + + W ++
Sbjct: 185 GVGLLELYTRCGDNDDAWRAFGDMP-KNDVIPWSFMIS 221
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 74/155 (47%), Gaps = 2/155 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++ + R++ V L+++Y +CG + A R F +M + V WS MI A GQ
Sbjct: 169 VHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQ 228
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+++AL F +M + PN TF +L A + +D + + + G+ +
Sbjct: 229 SEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKT-IHGHALKAGLSTDVFVSN 287
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
++ ++ G ++++ E + + N V W ++
Sbjct: 288 ALMACYAKCGCIEQSMELFEALSDR-NDVSWNTII 321
>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
Length = 798
Score = 347 bits (889), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 166/353 (47%), Positives = 238/353 (67%), Gaps = 3/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + F ++ + LI MY+KCG L+ A+RVF E + + W++MI G A HG
Sbjct: 355 VHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGL 414
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL F+ M G+ P+G+T+IG L AC + G V EGR F SMT I P EHY
Sbjct: 415 GEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYS 474
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL R+G ++EA++ I+NMP++P+ V+WGAL+G CR+H+N ++AE A+++L +L+P
Sbjct: 475 CMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPG 534
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDE-THP 240
N G +V+LS+IY RWED +++RK + + + K+PG S I D VH F +GD HP
Sbjct: 535 NAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHP 594
Query: 241 QAEKIFQMWEKLLDGMKLK-GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
+ I ++ EK LDG+ ++ GY + S VL DI+E++K L HSE+ A+ +GL+ P
Sbjct: 595 EHAAILRILEK-LDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPE 653
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIR+MKNLRVC DCH+A KLI++I +REI++RD NRFH F+ G CSC DYW
Sbjct: 654 GMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 2/148 (1%)
Query: 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
+ CN ++ + + G ++ A+ VF +M ER TWSAMI+ + EAL++F +M+
Sbjct: 267 VAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLW 326
Query: 75 IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ 134
G++PN + I +L C + +D GR +M + ++ + + G L
Sbjct: 327 RGVRPNYPSVISILTVCAALAVLDYGREVHAAM-LRCSFDMDVFAVSALITMYIKCGNLD 385
Query: 135 EAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+A K + V+W +++ G H
Sbjct: 386 KAKRVFHTFEPK-DIVMWNSMITGYAQH 412
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 9/145 (6%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN L+ + G + ARR+F EM +R V W+AM+ G G+ EA F++M
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
K N V++ ++ G V+ R+ F M + + M+ +AG
Sbjct: 201 ----PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEV-----SWTAMLVGYIQAGH 251
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLG 157
+++A E MP P ++G
Sbjct: 252 VEDAAELFNAMPEHPVAACNAMMVG 276
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 64/162 (39%), Gaps = 12/162 (7%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+RN+ +I Y + G + AR++F M ER +W+AM+ G G ++A FN
Sbjct: 202 KRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNA 261
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M E + +G G G VD + F M + M+ +
Sbjct: 262 MPEHPVAACNAMMVGF----GQRGMVDAAKTVFEKMCER-----DDGTWSAMIKAYEQNE 312
Query: 132 FLQEAYEFIRNM---PIKPNGVVWGALLGGCRVHKNIDLAEE 170
FL EA R M ++PN ++L C +D E
Sbjct: 313 FLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGRE 354
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 10/148 (6%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
F ++ +L+ YV+ G L A R+F +M ER +++ ++ GL G+ EA F+
Sbjct: 108 FPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFD 167
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
+M + + V + +L G + E R F M + + M+ ++
Sbjct: 168 EMPDRDV----VAWTAMLSGYCQAGRITEARALFDEMPKR-----NVVSWTAMISGYAQN 218
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGG 158
G + A + MP + N V W A+L G
Sbjct: 219 GEVNLARKLFEVMPER-NEVSWTAMLVG 245
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF 104
+V +++++++G HG +A+ F +M E N V++ LL G V+E RR F
Sbjct: 111 SVVSFTSLLRGYVRHGLLADAIRLFQQMPE----RNHVSYTVLLGGLLDAGRVNEARRLF 166
Query: 105 YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKN 164
M + + M+ +AG + EA MP K N V W A++ G +
Sbjct: 167 DEMPDR-----DVVAWTAMLSGYCQAGRITEARALFDEMP-KRNVVSWTAMISGYAQNGE 220
Query: 165 IDLAEEASRQLDQLDPLNN--GYHVVLSNIYAEAERWEDVARVRKLM 209
++LA R+L ++ P N + +L Y +A ED A + M
Sbjct: 221 VNLA----RKLFEVMPERNEVSWTAMLVG-YIQAGHVEDAAELFNAM 262
>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
Length = 647
Score = 347 bits (889), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 157/352 (44%), Positives = 233/352 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++G + + V +L+ MY +CGCL + RV +E + SAMI HG
Sbjct: 296 QIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHG 355
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++A+ F +M+ G +PN VTF+ LL+AC H G DEG F MT YG+ P ++HY
Sbjct: 356 HGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHY 415
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL R+G L EA + I +MP++P+GV+W LL C+ K D+AE + ++ +LDP
Sbjct: 416 TCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDP 475
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+LSNI A + RWEDV++VR+ MR V+K PG S + + G +H+F GDE+H
Sbjct: 476 HDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHS 535
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I + E+++ ++ GY P+ S+V D+E++EKE L HSEKLA+ F ++ P G
Sbjct: 536 RQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLSLPEG 595
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+MKNLRVC+DCH A KL+S+++ REIVVRD +RFH F+ G CSCGDYW
Sbjct: 596 VPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 647
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+RN+ N LI YVK G LE AR++F EM R V TW+AM+ GL G +E+L F
Sbjct: 105 KRNVMSWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFA 164
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M G++P+ L C + V GR+ ++ G+ + + + R G
Sbjct: 165 MRREGMQPDEYGLGSLFRCCAGLRDVVSGRQ-VHAYVVRSGLDRDMCVGSSLAHMYMRCG 223
Query: 132 FLQEAYEFIRNMP 144
FL++ +R +P
Sbjct: 224 FLRDGEAALRALP 236
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 68/136 (50%), Gaps = 1/136 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y +SG R++ V ++L MY++CG L + + + + I G +G
Sbjct: 195 QVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIVSCNTTISGRTQNG 254
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A+ AL F M G++ N VTF+ + +C + + +G++ +++ + G+ +
Sbjct: 255 DAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQ-IHALAIKTGVDKVVPVM 313
Query: 121 GCMVDLLSRAGFLQEA 136
+V + SR G L ++
Sbjct: 314 TSLVHMYSRCGCLGDS 329
>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g18750, chloroplastic; Flags: Precursor
gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 347 bits (889), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 164/351 (46%), Positives = 234/351 (66%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y ++G+ + V N+L+DMY KCG L A +F ++ + + +W+ MI G +HG
Sbjct: 521 IHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGF 580
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA+ FN+M + GI+ + ++F+ LL+AC H G VDEG RFF M E I P +EHY
Sbjct: 581 GKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYA 640
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VD+L+R G L +AY FI NMPI P+ +WGALL GCR+H ++ LAE+ + ++ +L+P
Sbjct: 641 CIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPE 700
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+V+++NIYAEAE+WE V R+RK + G++K PG S I + G V+ FVAGD ++P+
Sbjct: 701 NTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPE 760
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E I K+ M +GY P T L+D EE EKE+ L HSEKLA+ G++++ G
Sbjct: 761 TENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGK 820
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR+ KNLRVC DCH K +S++ REIV+RD NRFH F+ G CSC +W
Sbjct: 821 IIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++ F R R CNTL+DMY KCG L+ A+ VF EM +R+V ++++MI G A G
Sbjct: 318 VHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGL 377
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A EA+ F +M E GI P+ T +L+ C +DEG+R + E + I
Sbjct: 378 AGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKR-VHEWIKENDLGFDIFVSN 436
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ ++ G +QEA M +K + + W ++GG
Sbjct: 437 ALMDMYAKCGSMQEAELVFSEMRVK-DIISWNTIIGG 472
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVHE+ ++ +I V N L+DMY KCG ++ A VF EM + + +W+ +I G + +
Sbjct: 418 RVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNC 477
Query: 61 QAKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
A EAL+ FN ++E P+ T +L AC + D+GR + G
Sbjct: 478 YANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGRE-IHGYIMRNGYFSDRHV 536
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ ++ G L A+ ++ K + V W ++ G +H
Sbjct: 537 ANSLVDMYAKCGALLLAHMLFDDIASK-DLVSWTVMIAGYGMH 578
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 111/260 (42%), Gaps = 43/260 (16%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + +SGF V N+L+ Y+K ++ AR+VF EM ER V +W+++I G +G
Sbjct: 216 QLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNG 275
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR---------------RFFY 105
A++ L+ F +M+ GI+ + T + + C + GR RF
Sbjct: 276 LAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCN 335
Query: 106 SMTTEYGIIPQIE---------------HYGCMVDLLSRAGFLQEAYEFIRNMP---IKP 147
++ Y ++ Y M+ +R G EA + M I P
Sbjct: 336 TLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISP 395
Query: 148 NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSN----IYAEAERWEDVA 203
+ A+L C ++ +D E R + + + G+ + +SN +YA+ ++
Sbjct: 396 DVYTVTAVLNCCARYRLLD---EGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAE 452
Query: 204 RVRKLMRNLGVKKTPGWSSI 223
V MR VK W++I
Sbjct: 453 LVFSEMR---VKDIISWNTI 469
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V + +GF + + + L MY CG L+ A RVF E++ W+ ++ LA G
Sbjct: 116 VDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGD 175
Query: 62 AKEALTSFNKMIEIGIKPNGVTF 84
++ F KM+ G++ + TF
Sbjct: 176 FSGSIGLFKKMMSSGVEMDSYTF 198
>gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays]
Length = 611
Score = 347 bits (889), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 160/353 (45%), Positives = 227/353 (64%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+V Y+ + G+ ++V N+LI MY++CGC++ A RVF +++V TW+AMI GLA +G
Sbjct: 259 QVWAYAEEHGYGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANG 318
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A++ F +MI + P+ TF G+L AC H G VDEG RFF M EYG+ P + HY
Sbjct: 319 FGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHY 378
Query: 121 GCMVDLLSRAGFLQEAYEFIRN-MPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
GC+VDL+ RAG L EAYEF+ N M + P+ +W LLG CR+H ++DL E L +L
Sbjct: 379 GCIVDLMGRAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVIGNLIELK 438
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
G +V+L N YA W V+ +RKLM+ G++ TPG +++ +G VHEF+A D+ H
Sbjct: 439 AQQAGDYVLLLNTYAAVGEWSKVSEIRKLMQEEGIQTTPGCTTVEHNGTVHEFIADDDAH 498
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ +I++ ++ +++ GY+PN S L D++ + KE L HSEKLA+ F L+ TP
Sbjct: 499 PRKVEIYENLSEIYKQLRIAGYVPNVSSELHDLDSEGKESALTYHSEKLAIAFALLVTPQ 558
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLRVC DCH K+ S I R ++VRDR RFH FQ G CSC DYW
Sbjct: 559 HRPIRLAKNLRVCVDCHNFTKMFSAIYRRIVIVRDRTRFHHFQGGKCSCNDYW 611
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 4/160 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H G R+ + +L+ Y G +GAR++F EM R W+ +I A +
Sbjct: 156 QLHANVVAEGHLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNR 215
Query: 61 QAKEALTSFNKM--IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+ K+AL F +M + +P+ VT I LL AC +G +D G + ++ E+G +++
Sbjct: 216 RTKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQ-VWAYAEEHGYGGELK 274
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + R G + +AY P K + V W A++ G
Sbjct: 275 VRNSLITMYLRCGCVDKAYRVFSGTPQK-SVVTWTAMISG 313
>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g66520-like [Glycine max]
Length = 622
Score = 347 bits (889), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 237/355 (66%), Gaps = 5/355 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIHG 60
+H Y + + N R+ ++IDMY KCG +E A RVF E + ++ V+ W+AMI G A+HG
Sbjct: 269 IHAYIGKGEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMHG 328
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA+ F +M I PN VTFI LL+AC H V+EG+ +F M ++Y I P+IEHY
Sbjct: 329 MPNEAINVFEQMKVEKISPNKVTFIALLNACSHGYMVEEGKLYFRLMVSDYAITPEIEHY 388
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLLSR+G L+EA + I +MP+ P+ +WGALL CR++K+++ R + +DP
Sbjct: 389 GCMVDLLSRSGLLKEAEDMISSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKGMDP 448
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG--VKKTPGWSSITVDGVVHEFVAGDET 238
+ G HV+LSNIY+ + RW + AR+ + + KK PG SSI + G H+F+ GD++
Sbjct: 449 NHIGCHVLLSNIYSTSGRWNE-ARILREKNEISRDRKKIPGCSSIELKGTFHQFLVGDQS 507
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDI-EEKEKEKFLYRHSEKLALTFGLMNT 297
HPQ+ +I+ +++ +K GY+P +L DI +E++KE L HSEKLA+ FGLMNT
Sbjct: 508 HPQSREIYSFLDEMTTKLKSAGYVPELGELLHDIDDEEDKETALSVHSEKLAIAFGLMNT 567
Query: 298 PPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GTPIRI+KNLRVC DCH A K IS++ NR I+VRDR R+H F+ G CSC DYW
Sbjct: 568 ANGTPIRIVKNLRVCGDCHQATKFISKVYNRVIIVRDRTRYHHFEDGICSCKDYW 622
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 1/155 (0%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
Q R++ NTLI YV G + A+ +F M ER V +WS +I G G EAL
Sbjct: 174 QWAVDRDLYSWNTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALD 233
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F+KM++IG KPN T + L AC ++ +D+G ++ ++ + I ++D+
Sbjct: 234 FFHKMLQIGPKPNEYTLVSALAACSNLVALDQG-KWIHAYIGKGEIKMNERLLASIIDMY 292
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++ G ++ A +K +W A++GG +H
Sbjct: 293 AKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMH 327
>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
Length = 820
Score = 347 bits (889), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 164/352 (46%), Positives = 235/352 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S ++ + +N V N LIDMY KCG ++ AR VF + E +W+AMI G ++HG
Sbjct: 469 QIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHG 528
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL +F M+E KP+ VTF+G+L AC + G +D G+ +F SM EY I P EHY
Sbjct: 529 LYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHY 588
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMV LL R+G L +A + + +P +P+ +VW ALL C +H +++L +++++ +++P
Sbjct: 589 TCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEP 648
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ HV+LSNIYA A RW +VA +R M+ G++K PG S I G VH F GD +HP
Sbjct: 649 EDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHP 708
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ I M E L + +GY+P+ S VLLD+E+ +KE+ L+ HSE+LAL +GL+ TP
Sbjct: 709 DTKLINGMLEWLNMKARNEGYVPDFSSVLLDVEDVDKEQRLWVHSERLALAYGLIRTPSI 768
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+P+RI+KNLR+C DCHAA KLIS+IV R+I++RD NRFH F G CSCGDYW
Sbjct: 769 SPLRIIKNLRICADCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICSCGDYW 820
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 84/162 (51%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G N+ V N L+DMY KCG +E + ++F E T +W+ +I G G
Sbjct: 368 QIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAG 427
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++AL F M+E ++ VT+ +L AC + ++ G + +S++ +
Sbjct: 428 NGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQ-IHSLSVKTIYDKNTVVG 486
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++ G +++A + +M + + V W A++ G VH
Sbjct: 487 NALIDMYAKCGNIKDA-RLVFDMLREHDQVSWNAMISGYSVH 527
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 12/161 (7%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + GF + V LID Y CG E AR+VF +E + + +W+ M+ +
Sbjct: 167 VHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENEC 226
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHAC-----GHMGWVDEGRRFFYSMTTEYGIIPQ 116
+E+L F++M +G KPN TF +L AC ++G G F S E + +
Sbjct: 227 FEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVE 286
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
++DL ++G + +A + MP K + + W ++
Sbjct: 287 ------LIDLYIKSGDVDDALQVFEEMP-KDDVIPWSFMIA 320
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + ++ + + V LID+Y+K G ++ A +VF EM + V WS MI A Q
Sbjct: 268 VHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQ 327
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++EA+ F +M + PN T LL AC + + G + + + G+ +
Sbjct: 328 SEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQ-IHCHVVKVGLDMNVFVSN 386
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ ++ G ++ + + P V W ++ G
Sbjct: 387 ALMDMYAKCGRMENSLQLFSESP-NCTDVSWNTVIVG 422
>gi|296085287|emb|CBI29019.3| unnamed protein product [Vitis vinifera]
Length = 408
Score = 346 bits (888), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 165/340 (48%), Positives = 229/340 (67%), Gaps = 1/340 (0%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N V L+DMY KCG + A +VF ME + V W+ +I G+AI G KEA F +M
Sbjct: 69 NSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMK 128
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
E G++PN +TF+ +L AC H G VDEG++ M++ YGI P++EHYGC++DLL+RAG L
Sbjct: 129 EAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLL 188
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIY 193
+EA E I MP++PN GALL GCR+H N +L E ++L L P ++G +++LSNIY
Sbjct: 189 EEAMELIGTMPMEPNPCALGALLEGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIY 248
Query: 194 AEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLL 253
A A++W+D +VR LM+ G+ K PG S I + G+VH FVAGD +HP++ KI++ ++
Sbjct: 249 AAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIH 308
Query: 254 DGMKLK-GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVC 312
+K GY +T LLD+EE++KE L HSEKLA+ +GL++ IRI+KNLRVC
Sbjct: 309 TRLKSAIGYSADTGNGLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVC 368
Query: 313 EDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
DCH KLIS++ EI+VRDRNRFH F+ G CSC D+W
Sbjct: 369 RDCHHVTKLISKVYGGEIIVRDRNRFHHFEDGECSCLDFW 408
>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
Length = 595
Score = 346 bits (888), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 161/353 (45%), Positives = 227/353 (64%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+V Y+ + G+ ++V N+LI MY +CGC++ A RVF +++V TWSAMI GLA +G
Sbjct: 243 QVWAYAEEHGYGAKLKVRNSLIAMYSRCGCVDKAYRVFCGTPQKSVVTWSAMISGLAANG 302
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+++F +MI + P+ TF G+L AC H G VDEG RFF M EYG+ P + HY
Sbjct: 303 FGDDAISAFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHY 362
Query: 121 GCMVDLLSRAGFLQEAYEFIRN-MPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
GC+VDL+ RAG L EAYE + N M + P+ +W LLG CR+H ++DL E L +L
Sbjct: 363 GCIVDLMGRAGLLDEAYELVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVISNLIELK 422
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
G +V+L N YA W V+ VRKLM+ G++ TPG +++ +G V+EF+A D+ H
Sbjct: 423 AQQAGDYVLLLNTYAAVGEWSKVSEVRKLMQEKGIQTTPGCTTVEHNGEVYEFIADDDAH 482
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ +I++ ++ +++ GY+PN S L D++ + KE L HSEKLA+ F L+ TP
Sbjct: 483 PRKVEIYEKLNEINKQLRIAGYVPNVSSELHDLDSEGKESALTYHSEKLAIAFALLVTPQ 542
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLRVC DCH K+ S I NR ++VRDR RFH FQ G CSC DYW
Sbjct: 543 NRPIRLAKNLRVCVDCHNFTKVFSGIYNRLVIVRDRTRFHHFQGGKCSCNDYW 595
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 4/160 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H G R+ + +L+ Y G +GAR++F EM R W+ +I A +
Sbjct: 140 QLHANVVAEGHLRDALLATSLMACYANRGDGDGARKLFGEMPARDAVAWNVLISCCARNR 199
Query: 61 QAKEALTSFNKM--IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+ K+AL F +M + G +P+ VT I LL AC +G +D G + ++ E+G +++
Sbjct: 200 RTKDALKLFEEMRGRDSGAEPDDVTCILLLQACTSLGALDFGEQ-VWAYAEEHGYGAKLK 258
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + SR G + +AY P K + V W A++ G
Sbjct: 259 VRNSLIAMYSRCGCVDKAYRVFCGTPQK-SVVTWSAMISG 297
>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
Length = 720
Score = 346 bits (888), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 164/351 (46%), Positives = 234/351 (66%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y ++G+ + V N+L+DMY KCG L A +F ++ + + +W+ MI G +HG
Sbjct: 370 IHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGF 429
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA+ FN+M + GI+ + ++F+ LL+AC H G VDEG RFF M E I P +EHY
Sbjct: 430 GKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYA 489
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VD+L+R G L +AY FI NMPI P+ +WGALL GCR+H ++ LAE+ + ++ +L+P
Sbjct: 490 CIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPE 549
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+V+++NIYAEAE+WE V R+RK + G++K PG S I + G V+ FVAGD ++P+
Sbjct: 550 NTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPE 609
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E I K+ M +GY P T L+D EE EKE+ L HSEKLA+ G++++ G
Sbjct: 610 TENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGK 669
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR+ KNLRVC DCH K +S++ REIV+RD NRFH F+ G CSC +W
Sbjct: 670 IIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 720
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++ F R R CNTL+DMY KCG L+ A+ VF EM +R+V ++++MI G A G
Sbjct: 167 VHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGL 226
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A EA+ F +M E GI P+ T +L+ C +DEG+R + E + I
Sbjct: 227 AGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKR-VHEWIKENDLGFDIFVSN 285
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ ++ G +QEA M +K + + W ++GG
Sbjct: 286 ALMDMYAKCGSMQEAELVFSEMRVK-DIISWNTIIGG 321
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVHE+ ++ +I V N L+DMY KCG ++ A VF EM + + +W+ +I G + +
Sbjct: 267 RVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNC 326
Query: 61 QAKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
A EAL+ FN ++E P+ T +L AC + D+GR + G
Sbjct: 327 YANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGRE-IHGYIMRNGYFSDRHV 385
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ ++ G L A+ ++ K + V W ++ G +H
Sbjct: 386 ANSLVDMYAKCGALLLAHMLFDDIASK-DLVSWTVMIAGYGMH 427
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 111/260 (42%), Gaps = 43/260 (16%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + +SGF V N+L+ Y+K ++ AR+VF EM ER V +W+++I G +G
Sbjct: 65 QLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNG 124
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR---------------RFFY 105
A++ L+ F +M+ GI+ + T + + C + GR RF
Sbjct: 125 LAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCN 184
Query: 106 SMTTEYGIIPQIE---------------HYGCMVDLLSRAGFLQEAYEFIRNMP---IKP 147
++ Y ++ Y M+ +R G EA + M I P
Sbjct: 185 TLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISP 244
Query: 148 NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSN----IYAEAERWEDVA 203
+ A+L C ++ +D E R + + + G+ + +SN +YA+ ++
Sbjct: 245 DVYTVTAVLNCCARYRLLD---EGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAE 301
Query: 204 RVRKLMRNLGVKKTPGWSSI 223
V MR VK W++I
Sbjct: 302 LVFSEMR---VKDIISWNTI 318
>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 346 bits (888), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 161/352 (45%), Positives = 235/352 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++G +I V + L+D+Y KCGC+E A +F + R + +W+ +I G + HG
Sbjct: 375 QLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHG 434
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q ++AL +F M+ GI P+ TFIG+L AC MG V+EG++ F SM+ YGI P IEHY
Sbjct: 435 QGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHY 494
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVD+L RAG E FI M + P ++W +LG C++H N+D E+A+++L +++P
Sbjct: 495 ACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEP 554
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ + +++LSNI+A RW+DV +R LM + G+KK PG S + VDG VH F++ D +HP
Sbjct: 555 MMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHP 614
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ +KL + GY+P T VVL ++ KEK + LY HSE+LAL+F L++T
Sbjct: 615 KIREIYAKLDKLGQSLMSIGYVPKTEVVLHNVSNKEKMEHLYYHSERLALSFALLSTNAV 674
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLR+CEDCH KLIS+I N+EIVVRD RFH F+ G+CSC D W
Sbjct: 675 KPIRIFKNLRICEDCHDFMKLISDITNQEIVVRDIRRFHHFKRGTCSCQDRW 726
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 2/175 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + ++ + V L+DMY K CLE A F + R +F+W+ +I G A
Sbjct: 274 QVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTD 333
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
QA++A+ F +M GIKPN T L C HM ++ GR+ +++ + G I
Sbjct: 334 QAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQ-LHAVAVKAGHFGDIFVG 392
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
+VDL + G ++ A + + I + V W ++ G H + A EA R +
Sbjct: 393 SALVDLYGKCGCMEHAEAIFKGL-ISRDIVSWNTIISGYSQHGQGEKALEAFRMM 446
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + +SG + + +L+DMY KCG + A +VF ++ V WSAMI GL G
Sbjct: 73 LHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGH 132
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA F+ M G +PN T L+ +MG + G+ + +YG
Sbjct: 133 GQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQS-IHGCICKYGFESDNLVSN 191
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + ++ +++ + M P+ V W ALL G
Sbjct: 192 PLIMMYMKSRCVEDGNKVFEAMT-NPDLVSWNALLSG 227
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 12/133 (9%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90
+E A R+F M E+ +W+A++ G A G K+ L F KM E K + T +L
Sbjct: 1 MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60
Query: 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHY-GC-MVDLLSRAGFLQEA---YEFIRNMPI 145
C + G + EG + +++ G +I+ + GC +VD+ S+ G + +A + IRN
Sbjct: 61 CANTGSLREG-KVLHALALRSGC--EIDEFLGCSLVDMYSKCGTVYDALKVFTKIRN--- 114
Query: 146 KPNGVVWGALLGG 158
P+ V W A++ G
Sbjct: 115 -PDVVAWSAMITG 126
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 116/299 (38%), Gaps = 60/299 (20%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF + V N LI MY+K C+E +VF M + +W+A++ G F
Sbjct: 182 GFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIF 241
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF---------------YSMTTEYGII 114
+M+ G KPN TFI +L +C + + G++ ++ Y
Sbjct: 242 YQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKA 301
Query: 115 PQIEHYGCMVD-LLSR---------AGFLQ-----EAYEFIRNMP---IKPNGVVWGALL 156
+E G D L++R +G+ Q +A ++ R M IKPN + L
Sbjct: 302 RCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCL 361
Query: 157 GGCRVHKNIDLAEEASRQLDQLDPLNNGYH------VVLSNIYAEAERWEDVARVRKLMR 210
GC + E RQL + + G+ L ++Y + E + +
Sbjct: 362 SGCSHMATL----ENGRQLHAV-AVKAGHFGDIFVGSALVDLYGKCGCME---HAEAIFK 413
Query: 211 NLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVL 269
L + W++I ++G H Q EK + + +L +G +P+ + +
Sbjct: 414 GLISRDIVSWNTI---------ISGYSQHGQGEKALEAFRMMLS----EGIMPDEATFI 459
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 346 bits (888), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 163/338 (48%), Positives = 238/338 (70%), Gaps = 1/338 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH Y + G RN+ N L+D+Y +CG +E A+ +F EM ++ +W+++I GLA++G
Sbjct: 243 RVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNG 302
Query: 61 QAKEALTSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
KEA+ F M G+ P +TF+G+L+AC H G V EG +F M EY I P+IEH
Sbjct: 303 FGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEH 362
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
+GCMVDLL+RAG +++AYE+I++MP++PN V+W LLG C VH + DLAE A Q+ QL+
Sbjct: 363 FGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLE 422
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P ++G +V+LSN+YA +RW DV ++RK M GVKK PG S + V VHEF+ GD++H
Sbjct: 423 PNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSH 482
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
PQ++ I+ +++ ++ +GY+P S V +D+EE+EKE + HSEK+A+ F L++TP
Sbjct: 483 PQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPE 542
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNR 337
+PI ++KNLRVC DCH A KL+S++ NREIVVRDR+R
Sbjct: 543 RSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSR 580
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 2/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +SGF I V N+L+ +Y CG + A +VF +M E+ + W+++I G A +G+
Sbjct: 143 IHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGK 202
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL + +M GIKP+G T + LL AC +G + G+R M + G+ +
Sbjct: 203 PEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM-IKVGLTRNLHSSN 261
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++DL +R G ++EA M + N V W +L+ G V+
Sbjct: 262 VLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVGLAVN 301
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 4/127 (3%)
Query: 34 ARRVFIEMEER-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG-IKPNGVTFIGLLHAC 91
A +VF ++E+ VF W+ +I+G A G + A + + +M G ++P+ T+ L+ A
Sbjct: 72 AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAV 131
Query: 92 GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV 151
M V G +S+ G I ++ L + G + AY+ MP K + V
Sbjct: 132 TTMADVRLGET-IHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEK-DLVA 189
Query: 152 WGALLGG 158
W +++ G
Sbjct: 190 WNSVING 196
>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 748
Score = 346 bits (888), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 164/352 (46%), Positives = 231/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H + SG I V N L+ +Y KCG +E + R+F E+ + TW+A++ G A G
Sbjct: 397 QFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFG 456
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A E + F M+ G+KP+ VTFIG+L AC G V++G + F SM E+GI+P +HY
Sbjct: 457 KANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHY 516
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DL SRAG ++EA FI MP P+ + W LL CR + N+D+ + A+ L +LDP
Sbjct: 517 TCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDP 576
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N +V+LS++YA +WE+VAR+RK MR+ G++K PG S I VH F A D+++P
Sbjct: 577 HNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNP 636
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+++I+ EKL M +GY+P+ + VL D+ + EK K L HSEKLA+ FGL+ PPG
Sbjct: 637 FSDQIYSELEKLNYKMIKEGYVPDMNSVLHDVGDSEKIKMLNHHSEKLAIAFGLLFIPPG 696
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR++KNLRVC DCH A K IS+I NREI+VRD RFH F+ G+CSCGD+W
Sbjct: 697 LPIRVVKNLRVCSDCHNATKYISKITNREILVRDTARFHLFKDGTCSCGDFW 748
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 89/158 (56%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y ++ ++ NI V + L+DMY KC ++ A VF +M + V +W+AM+ G +G
Sbjct: 296 QVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNG 355
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++EA+ +F+ M + GI+P+ T ++ +C ++ ++EG +F T G+I I
Sbjct: 356 YSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTS-GLISFITVS 414
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V L + G +++++ + K + V W AL+ G
Sbjct: 415 NALVTLYGKCGSIEDSHRLFNEISFK-DEVTWTALVSG 451
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 79/147 (53%), Gaps = 4/147 (2%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+N+ + NTLI ++CG +E ++R+F EM ER +W++MI G +G ++A+ F +M
Sbjct: 207 KNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREM 266
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLLSRAG 131
++ + TF +L ACG + + EG++ Y + T+Y I +VD+ +
Sbjct: 267 KLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYK--DNIFVASALVDMYCKCK 324
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ A + M K N V W A+L G
Sbjct: 325 NIKSAEAVFKKMTCK-NVVSWTAMLVG 350
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 4/147 (2%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N+ NT++ Y K G + +F M R +W+++I G A G +++ ++N M+
Sbjct: 74 NLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLML 133
Query: 74 --EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
+ N +TF LL G V GR+ + ++G + + +VD+ S+ G
Sbjct: 134 KNDGSFNLNRITFSTLLILASKRGCVKLGRQ-IHGHVVKFGFMSYVFVGSPLVDMYSKMG 192
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ A + +P K N V++ L+ G
Sbjct: 193 MISCARKVFDELPEK-NVVMYNTLIMG 218
>gi|3377941|emb|CAA17526.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1331
Score = 346 bits (888), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 163/338 (48%), Positives = 238/338 (70%), Gaps = 1/338 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH Y + G RN+ N L+D+Y +CG +E A+ +F EM ++ +W+++I GLA++G
Sbjct: 26 RVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNG 85
Query: 61 QAKEALTSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
KEA+ F M G+ P +TF+G+L+AC H G V EG +F M EY I P+IEH
Sbjct: 86 FGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEH 145
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
+GCMVDLL+RAG +++AYE+I++MP++PN V+W LLG C VH + DLAE A Q+ QL+
Sbjct: 146 FGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLE 205
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P ++G +V+LSN+YA +RW DV ++RK M GVKK PG S + V VHEF+ GD++H
Sbjct: 206 PNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSH 265
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
PQ++ I+ +++ ++ +GY+P S V +D+EE+EKE + HSEK+A+ F L++TP
Sbjct: 266 PQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPE 325
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNR 337
+PI ++KNLRVC DCH A KL+S++ NREIVVRDR+R
Sbjct: 326 RSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSR 363
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
IKP+G T + LL AC +G + G+R M + G+ + ++DL +R G ++EA
Sbjct: 1 IKPDGFTIVSLLSACAKIGALTLGKRVHVYM-IKVGLTRNLHSSNVLLDLYARCGRVEEA 59
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVH 162
M + N V W +L+ G V+
Sbjct: 60 KTLFDEM-VDKNSVSWTSLIVGLAVN 84
>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 658
Score = 346 bits (888), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 172/351 (49%), Positives = 233/351 (66%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + G + V N LI MY +CG + +RVF M+ R V +W+++I +HG
Sbjct: 308 IHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGF 367
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K+A+ F MI G P+ ++FI +L AC H G V+EG+ F SM ++Y I P +EHY
Sbjct: 368 GKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYA 427
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RA L EA + I +M +P VWG+LLG CR+H N++LAE AS L +L+P
Sbjct: 428 CMVDLLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPR 487
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V+L++IYAEA+ W + V KL+ G++K PG S I V V+ FV+ DE +PQ
Sbjct: 488 NAGNYVLLADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQ 547
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E+I + KL + MK +GY+P T+VVL D++E+EKE+ + HSEKLA+ FGL+NT G
Sbjct: 548 IEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKLAVAFGLINTVKGE 607
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI KNLR+CEDCHA K IS+ NREI+VRD NRFH F+ G CSCGDYW
Sbjct: 608 TIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFKDGVCSCGDYW 658
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 6/160 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH SGF ++ + LI+MY + G ++ AR+VF E ERT++ W+A+ + LA+ G
Sbjct: 100 VHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGC 159
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACG----HMGWVDEGRRFFYSMTTEYGIIPQI 117
KE L + +M IGI + T+ +L AC + + +G+ ++ +G I
Sbjct: 160 GKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKE-IHAHILRHGYEANI 218
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
++D+ ++ G + A MP K N V W A++
Sbjct: 219 HVMTTLLDVYAKFGSVSYANSVFCAMPTK-NFVSWSAMIA 257
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 4/158 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G+ NI V TL+D+Y K G + A VF M + +WSAMI A +
Sbjct: 205 IHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEM 264
Query: 62 AKEALTSFNKMI--EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+AL F M+ PN VT + +L AC + +++G + + G+ +
Sbjct: 265 PMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQG-KLIHGYILRRGLDSILPV 323
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
++ + R G + NM + + V W +L+
Sbjct: 324 LNALITMYGRCGEILMGQRVFDNMKNR-DVVSWNSLIS 360
>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g59720, mitochondrial; Flags: Precursor
gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 346 bits (888), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 168/351 (47%), Positives = 242/351 (68%), Gaps = 12/351 (3%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ V N+LI+MY KCG L A +VF M++R + +W+AMI G A HG+A+EA+ F++M+
Sbjct: 288 DVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMV 347
Query: 74 EI--GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
+ ++PN VTF+GLL AC H G+V++GR++F M +Y I P +EHYGC+VDL++RAG
Sbjct: 348 DKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAG 407
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGC-RVHKNIDLAEEASRQLDQLDPLN-------N 183
++ EA + + +MP+KP+ V+W +LL C + +++L+EE +R + N +
Sbjct: 408 YITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCS 467
Query: 184 GYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAE 243
G +V+LS +YA A RW DV VRKLM G++K PG SSI ++G+ HEF AGD +HPQ +
Sbjct: 468 GAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTK 527
Query: 244 KIFQMWEKLLDGMKLKGYIPNTS-VVLLD-IEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I+Q + + D ++ GY+P+ S L+D + KE L HSE+LA+ FGL+N PP T
Sbjct: 528 QIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQT 587
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH KLIS++ N EI+VRDR RFH F+ GSCSC DYW
Sbjct: 588 PIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 7/180 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + GF ++ V N LI +Y CGCL+ AR+VF EM ER++ +W++MI L G
Sbjct: 172 QVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFG 231
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR--RFFYSMTTEYGIIPQIE 118
+ AL F +M + +P+G T +L AC +G + G F + + +
Sbjct: 232 EYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVL 290
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++++ + G L+ A + + M K + W A++ G H AEEA D++
Sbjct: 291 VKNSLIEMYCKCGSLRMAEQVFQGMQ-KRDLASWNAMILGFATHGR---AEEAMNFFDRM 346
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 106/267 (39%), Gaps = 46/267 (17%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLAIH-GQAKEALTSFNKMIEIG-IKPNGVTFIGLLHAC 91
A RVF +E + F W+ +I+ A + +EA + KM+E G P+ TF +L AC
Sbjct: 102 AFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKAC 161
Query: 92 GHMGWVDEGRR---------FFYSMTTEYGIIPQIEHYGC-------------------- 122
++ EG++ F + G+I GC
Sbjct: 162 AYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWN 221
Query: 123 -MVDLLSRAGFLQEAYEFIRNM--PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
M+D L R G A + R M +P+G ++L C ++ L A L +
Sbjct: 222 SMIDALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKC 281
Query: 180 PLNNGYHVVLSNIYAEAE-RWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
++ V++ N E + + ++ + + + W+++ + G T
Sbjct: 282 DVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAM---------ILGFAT 332
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNT 265
H +AE+ +++++D K + PN+
Sbjct: 333 HGRAEEAMNFFDRMVD--KRENVRPNS 357
>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
Length = 615
Score = 346 bits (888), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 168/351 (47%), Positives = 242/351 (68%), Gaps = 12/351 (3%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ V N+LI+MY KCG L A +VF M++R + +W+AMI G A HG+A+EA+ F++M+
Sbjct: 265 DVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMV 324
Query: 74 EI--GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
+ ++PN VTF+GLL AC H G+V++GR++F M +Y I P +EHYGC+VDL++RAG
Sbjct: 325 DKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAG 384
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGC-RVHKNIDLAEEASRQLDQLDPLN-------N 183
++ EA + + +MP+KP+ V+W +LL C + +++L+EE +R + N +
Sbjct: 385 YITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCS 444
Query: 184 GYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAE 243
G +V+LS +YA A RW DV VRKLM G++K PG SSI ++G+ HEF AGD +HPQ +
Sbjct: 445 GAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTK 504
Query: 244 KIFQMWEKLLDGMKLKGYIPNTS-VVLLD-IEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I+Q + + D ++ GY+P+ S L+D + KE L HSE+LA+ FGL+N PP T
Sbjct: 505 QIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQT 564
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH KLIS++ N EI+VRDR RFH F+ GSCSC DYW
Sbjct: 565 PIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 615
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 7/180 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + GF ++ V N LI +Y CGCL+ AR+VF EM ER++ +W++MI L G
Sbjct: 149 QVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFG 208
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR--RFFYSMTTEYGIIPQIE 118
+ AL F +M + +P+G T +L AC +G + G F + + +
Sbjct: 209 EYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVL 267
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++++ + G L+ A + + M K + W A++ G H AEEA D++
Sbjct: 268 VKNSLIEMYCKCGSLRMAEQVFQGMQ-KRDLASWNAMILGFATHGR---AEEAMNFFDRM 323
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 106/267 (39%), Gaps = 46/267 (17%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLAIH-GQAKEALTSFNKMIEIG-IKPNGVTFIGLLHAC 91
A RVF +E + F W+ +I+ A + +EA + KM+E G P+ TF +L AC
Sbjct: 79 AFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKAC 138
Query: 92 GHMGWVDEGRR---------FFYSMTTEYGIIPQIEHYGC-------------------- 122
++ EG++ F + G+I GC
Sbjct: 139 AYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWN 198
Query: 123 -MVDLLSRAGFLQEAYEFIRNM--PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
M+D L R G A + R M +P+G ++L C ++ L A L +
Sbjct: 199 SMIDALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKC 258
Query: 180 PLNNGYHVVLSNIYAEAE-RWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
++ V++ N E + + ++ + + + W+++ + G T
Sbjct: 259 DVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAM---------ILGFAT 309
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNT 265
H +AE+ +++++D K + PN+
Sbjct: 310 HGRAEEAMNFFDRMVD--KRENVRPNS 334
>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Vitis vinifera]
Length = 684
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 175/353 (49%), Positives = 229/353 (64%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + ++ NI V + L+DMY KCG +E A R F EM ER + TW+AMI G A GQ
Sbjct: 332 VHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQ 391
Query: 62 AKEALTSFNKMI--EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
A A+T F++M + PN VTF+ +L AC G V+ G F SM YGI P EH
Sbjct: 392 ADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEH 451
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y C+VDLL RAG +++AY+FI+ MPI+P VWGALLG ++ +L + A+ L +LD
Sbjct: 452 YACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELD 511
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
PL++G HV+LSN++A A RWE+ VRK M+++G+KK G S IT VH F A D +H
Sbjct: 512 PLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSH 571
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
+ +I M KL M+ GYIP+TS L D+EE+EK ++ HSEK+AL FGL++ P
Sbjct: 572 ERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAFGLISIPA 631
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIRI KNLR+C DCH+A K IS IV REI+VRD N FH F+ CSC DYW
Sbjct: 632 GVPIRITKNLRICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 684
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 2/156 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + ++G ++ V + DMY K G E AR++F EM ER + TW+A + + G
Sbjct: 129 QVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEG 188
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +ALT+F + G +PN +TF L+AC ++ GR+ + + G +
Sbjct: 189 RYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQ-LHGFVLQSGFEADVSVA 247
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
++D + + E I + KPN V W +++
Sbjct: 248 NGLIDFYGKCHQVG-CSEIIFSGISKPNDVSWCSMI 282
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 88/191 (46%), Gaps = 8/191 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + QSGF ++ V N LID Y KC + + +F + + +W +MI +
Sbjct: 230 QLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQND 289
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ ++A F + + GI+P +L AC + ++ G+ +++ + ++ I
Sbjct: 290 EEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKS-VHTLAVKACVVGNIFVG 348
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+VD+ + G +++A MP + N V W A++GG D+A + D
Sbjct: 349 SALVDMYGKCGSIEDAERAFDEMPER-NLVTWNAMIGGYAHQGQADMA------VTLFDE 401
Query: 181 LNNGYHVVLSN 191
+ G H V N
Sbjct: 402 MTCGSHRVAPN 412
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 4/154 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N L++MY K A+ + R+V TW+A+I G +G+ AL F+ M I+
Sbjct: 46 NHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQ 105
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMV-DLLSRAGFLQEAY 137
PN TF A G + G++ +++ + G I + GC D+ S+AG +EA
Sbjct: 106 PNDFTFPCAFKASGSLRSPLVGKQ-VHALAVKAGQISDV-FVGCSAFDMYSKAGLTEEAR 163
Query: 138 EFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
+ MP + N W A L + D A A
Sbjct: 164 KMFDEMPER-NIATWNAYLSNSVLEGRYDDALTA 196
>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Glycine max]
Length = 674
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 156/326 (47%), Positives = 225/326 (69%)
Query: 27 KCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIG 86
+CGCL+ + + F+E +ER V WS+MI HGQ +EA+ FN+M + + N +TF+
Sbjct: 349 RCGCLQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEAIKLFNEMEQENLPGNEITFLS 408
Query: 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIK 146
LL+AC H G D+G F M +YG+ +++HY C+VDLL R+G L+EA IR+MP+K
Sbjct: 409 LLYACSHCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVDLLGRSGCLEEAEAMIRSMPVK 468
Query: 147 PNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVR 206
+ ++W LL C++HKN ++A + ++ ++DP ++ +V+L+NIY+ A RW++V+ VR
Sbjct: 469 ADAIIWKTLLSACKIHKNAEIARRVADEVLRIDPQDSASYVLLANIYSSANRWQNVSEVR 528
Query: 207 KLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTS 266
+ M++ VKK PG S + V VH+F GDE HP+ +I Q E+L +K +GY+P+TS
Sbjct: 529 RAMKDKMVKKEPGISWVEVKNQVHQFHMGDECHPKHVEINQYLEELTSEIKRQGYVPDTS 588
Query: 267 VVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAAFKLISEIV 326
VL D++ +EKE+ L HSEKLA+ F LMNTP G PIR+MKNLRVC DCH A K ISEI
Sbjct: 589 SVLHDMDNEEKEQILRHHSEKLAIAFALMNTPEGVPIRVMKNLRVCSDCHVAIKYISEIK 648
Query: 327 NREIVVRDRNRFHCFQAGSCSCGDYW 352
EI+VRD +RFH F+ G+CSCGDYW
Sbjct: 649 KLEIIVRDSSRFHHFKNGTCSCGDYW 674
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 2/147 (1%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
RRNI CN +I Y+ G LE A+ +F EM +R V TW+AM+ GL +EAL F++
Sbjct: 132 RRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSR 191
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M E+ P+ + +L C H+G + G++ ++ + G + + + +AG
Sbjct: 192 MNELSFMPDEYSLGSVLRGCAHLGALLAGQQ-VHAYVMKCGFECNLVVGCSLAHMYMKAG 250
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ + I MP + V W L+ G
Sbjct: 251 SMHDGERVINWMP-DCSLVAWNTLMSG 276
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 88/182 (48%), Gaps = 5/182 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y + GF N+ V +L MY+K G + RV M + ++ W+ ++ G A G
Sbjct: 222 QVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSLVAWNTLMSGKAQKG 281
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ L + M G +P+ +TF+ ++ +C + + +G++ ++ + G ++
Sbjct: 282 YFEGVLDQYCMMKMAGFRPDKITFVSVISSCSELAILCQGKQ-IHAEAVKAGASSEVSVV 340
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+V + SR G LQ++ + + + V+W +++ H EEA + ++++
Sbjct: 341 SSLVSMYSRCGCLQDSIKTFLECK-ERDVVLWSSMIAAYGFHGQ---GEEAIKLFNEMEQ 396
Query: 181 LN 182
N
Sbjct: 397 EN 398
>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 166/351 (47%), Positives = 230/351 (65%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y +SG + NTL+DMY K G + AR++F + +R V +W++++ A HG
Sbjct: 275 VHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGF 334
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ F +M GI+PN ++F+ +L AC H G +DEG + Y + + GI+ + HY
Sbjct: 335 GNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHY-YELMKKDGIVLEAWHYV 393
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+VDLL RAG L A FI MPI+P +W ALL CR+HKN +L A+ + +LDP
Sbjct: 394 TIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPD 453
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G HV+L NIYA RW D ARVRK M+ GVKK P S + ++ +H FVA DE HPQ
Sbjct: 454 DPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQ 513
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E+I + WE++L +K GY+P+TS V++ ++++E+E L HSEK+AL F L+NTPPG+
Sbjct: 514 REEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGS 573
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I I KN+RVC DCH+A KL S+ V REI+VRD NRFH F+ G+CSC DYW
Sbjct: 574 TIHIKKNIRVCGDCHSAIKLASKAVGREIIVRDTNRFHHFKDGACSCKDYW 624
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 22/185 (11%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + QS FR ++ + NTL++MY KCG LE AR+VF +M ER TW+ +I G + H +
Sbjct: 73 VHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDR 132
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHA--------CGHMGWVDEGRRFFYSMTTEYGI 113
+AL FN+M+ G PN T ++ A CGH + + G
Sbjct: 133 PFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQ---------LHGFCVKCGF 183
Query: 114 IPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG----CRVHKNIDLAE 169
+ ++DL +R G + +A + + + N V W AL+ G C K ++L +
Sbjct: 184 DSNVHVGSALLDLYTRYGLMDDA-QLVFDALESRNDVSWNALIAGHARRCGTEKALELFQ 242
Query: 170 EASRQ 174
R+
Sbjct: 243 GMLRE 247
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 84/162 (51%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + GF N+ V + L+D+Y + G ++ A+ VF +E R +W+A+I G A
Sbjct: 173 QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRC 232
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++AL F M+ G +P+ ++ L AC G++++G ++ ++ + G
Sbjct: 233 GTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQG-KWVHAYMIKSGEKLVAFAG 291
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ +++G + +A + + K + V W +LL H
Sbjct: 292 NTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNSLLTAYAQH 332
>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
Length = 564
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 167/351 (47%), Positives = 234/351 (66%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y N+ ++ + L++MY KCGC+E A+ VF M + WS+MI GLAI+G
Sbjct: 215 VHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGL 274
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A++AL F +M E +KPN VTFIG+L AC H G V EGRR++ SM E+GI+P +E YG
Sbjct: 275 AEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSML-EFGIVPSMELYG 333
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RA +++A + MPI PN V+W LL GC+ KN+D +E +++L +L+P
Sbjct: 334 CMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPH 393
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N +++LSN+YA +WE +++VRK M+ +G+K PG SSI VDG+VHEFV GD +HP+
Sbjct: 394 NAENYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPE 453
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A ++ ++ + + G+ P S VL ++ ++EKE L HSE+LA+ +GL+ T
Sbjct: 454 AMEVREILRDISKRVHAVGHQPGISDVLHNVVDEEKENALCEHSERLAIAYGLLKTKTPM 513
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC DCH K+IS REI+VRDR RFH F GSCSC D+W
Sbjct: 514 AIRIVKNLRVCGDCHEVTKIISAEYRREIIVRDRVRFHKFVNGSCSCRDFW 564
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 132/293 (45%), Gaps = 18/293 (6%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH +SGF + V L++ Y KC + A +VF E+ +R + WS MI G A G
Sbjct: 113 QVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIG 172
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL F M + G+ P+ VT + ++ AC G +D G ++ ++ + I +E
Sbjct: 173 LVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTG-KWVHAYINKQLIETDLELS 231
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+V++ ++ G ++ A E MP+K + W +++ G ++ LAE+A + +++
Sbjct: 232 TALVNMYAKCGCIERAKEVFDAMPVK-DTKAWSSMIVGLAIN---GLAEDALEEFFRMEE 287
Query: 181 LN-NGYHVVLSNIYAEAERWEDVARVRKL---MRNLGVKKTPGWSSITVDGVVHEFVAGD 236
HV + + V+ R+ M G+ + VD + + D
Sbjct: 288 AKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRASLVED 347
Query: 237 -----ETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVV---LLDIEEKEKEKFL 281
ET P + +W LL G K + + VV LL++E E ++
Sbjct: 348 ACTLVETMPISPNPV-IWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYI 399
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 112/258 (43%), Gaps = 44/258 (17%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLA-IHGQAKEALTSFNKMIEIGI-KPNGVTFIG 86
G ++ AR++F +++ +F+W++MI+G + +KE + F KM+ G PN T
Sbjct: 38 GDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAF 97
Query: 87 LLHACGHMGWVDEGRRFFYS-MTTEYGIIPQIE--------------------------- 118
+L AC + ++EG++ + + + +G P +E
Sbjct: 98 VLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRN 157
Query: 119 --HYGCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGCRVHKNIDLAEEASR 173
+ M+ +R G + EA R+M + P+ V +++ C +D +
Sbjct: 158 LVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHA 217
Query: 174 QLD-QLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEF 232
++ QL + L N+YA+ E R +++ + VK T WSS+ V G+
Sbjct: 218 YINKQLIETDLELSTALVNMYAKCGCIE---RAKEVFDAMPVKDTKAWSSMIV-GLAING 273
Query: 233 VAGDETHPQAEKIFQMWE 250
+A D E+ F+M E
Sbjct: 274 LAEDAL----EEFFRMEE 287
>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 596
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 163/351 (46%), Positives = 235/351 (66%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y + R + + LIDMY KCG ++ A + F +R V ++A I GLA++G
Sbjct: 246 VHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGC 305
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++EAL F +M GI P+GV++I +L AC H GWV++G +F SM+ +GI P+++HY
Sbjct: 306 SEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYA 365
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L+EA +F+ +MPIKP+ V+WGALLG CRV+ N ++ + L + D
Sbjct: 366 CMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRVGSLLVESDQN 425
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +++LSNIYAE+ + ED +VRK MR V + PG S I V G VHEF +GD +H +
Sbjct: 426 HDGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIEVAGFVHEFFSGDRSHEK 485
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E+I+ MWE+++ +K GY T V+ D+EE+EKE + HSEKLA+ FG + T G+
Sbjct: 486 TEEIYLMWEEIVKEIKKFGYREETRAVVFDVEEEEKEAVIGHHSEKLAVAFGFLYTKSGS 545
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+RI+KN+R+C DCH A KL+S++ R+I +RDR FH F+ G CSC DYW
Sbjct: 546 TLRIVKNIRICSDCHYAIKLVSKVFKRKIAIRDRKCFHHFEEGLCSCKDYW 596
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 72/174 (41%), Gaps = 33/174 (18%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N++ID ++ G + A +F +M ER +W+ MI G A +GQ KEAL F +M + +
Sbjct: 162 NSMIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQE 221
Query: 79 PNGVTFIGLLHACGHMGWVDEG------------------RRFFYSMTTEYGIIP----- 115
PN + +L AC +G +D G M + G I
Sbjct: 222 PNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQA 281
Query: 116 -------QIEHYGCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGC 159
+ Y + L+ G +EA + M I P+GV + A+L C
Sbjct: 282 FSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCAC 335
>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Glycine max]
Length = 1582
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 161/336 (47%), Positives = 226/336 (67%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V +L+DMY KCG +E AR +F + +W+AMI GLA HG A+EAL F +M G
Sbjct: 1247 VMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRG 1306
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
+ P+ VTFIG+L AC H G V E FYSM YGI P+IEHY C+VD LSRAG ++EA
Sbjct: 1307 VTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREA 1366
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
+ I +MP + + ++ LL CRV + + + + +L L+P ++ +V+LSN+YA A
Sbjct: 1367 EKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAA 1426
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGM 256
+WE+VA R +MR VKK PG+S + + VH FVAGD +H + + I+ E ++ +
Sbjct: 1427 NQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRI 1486
Query: 257 KLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCH 316
+ +GY+P+T L+D+EE++KE LY HSEKLA+ +GLM TPP T +R++KNLRVC DCH
Sbjct: 1487 REEGYLPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCH 1546
Query: 317 AAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
A K IS++ RE+V+RD NRFH F++G CSCGDYW
Sbjct: 1547 NAIKYISKVFEREVVLRDANRFHHFRSGVCSCGDYW 1582
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 87/169 (51%), Gaps = 5/169 (2%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF ++ V + ++DMY+KCG +E ARR+F E+ W+ MI G +GQ + AL ++
Sbjct: 1139 GFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTY 1198
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+ M ++P+ TF L+ AC + +++GR+ ++ T + +VD+ ++
Sbjct: 1199 HHMRLSKVQPDEYTFATLVKACSLLTALEQGRQ-IHANTVKLNCAFDPFVMTSLVDMYAK 1257
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
G +++A + W A++ G H N AEEA + +++
Sbjct: 1258 CGNIEDARGLFKRTNTS-RIASWNAMIVGLAQHGN---AEEALQFFEEM 1302
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SG + + V N LI+MYVK G + AR VF +M E + +W+ MI G A+ G
Sbjct: 927 QIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSG 986
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ ++ F ++ G+ P+ T +L AC +G ++ + G++
Sbjct: 987 LEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVS 1046
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ S++G ++EA EF+ + W A++ G
Sbjct: 1047 TTLIDVYSKSGKMEEA-EFLFVNQDGFDLASWNAMMHG 1083
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 121/303 (39%), Gaps = 60/303 (19%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++G + V TLID+Y K G +E A +F+ + + +W+AM+ G + G
Sbjct: 1029 QIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSG 1088
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+AL + M E G + N +T A G + + +G++ ++ + G +
Sbjct: 1089 DFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQ-IQAVVVKRGFNLDLFVI 1147
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC----------------RVHK- 163
++D+ + G ++ A +P P+ V W ++ GC R+ K
Sbjct: 1148 SGVLDMYLKCGEMESARRIFNEIP-SPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKV 1206
Query: 164 --------------NIDLAEEASRQLD--------QLDPLNNGYHVVLSNIYAEAERWED 201
++ A E RQ+ DP L ++YA+ ED
Sbjct: 1207 QPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPF---VMTSLVDMYAKCGNIED 1263
Query: 202 VARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGY 261
R L + + W+++ V G H AE+ Q +E+ MK +G
Sbjct: 1264 ---ARGLFKRTNTSRIASWNAMIV---------GLAQHGNAEEALQFFEE----MKSRGV 1307
Query: 262 IPN 264
P+
Sbjct: 1308 TPD 1310
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ + G + ++ V L+++Y K G + AR +F M R V W+ M++ G
Sbjct: 749 LHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGL 808
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGL 87
EAL F++ G++P+ VT L
Sbjct: 809 EYEALLLFSEFNRTGLRPDDVTLCTL 834
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 6/158 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE--RTVFTWSAMIQGLAI 58
R H SG + + N LI MY KCG L AR++F + R + TW+A++ A
Sbjct: 647 RAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHA- 705
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+A++ F + + T + C + + + G+ +
Sbjct: 706 -DKARDGFHLFRLLRRSFVSATRHTLAPVFKMC-LLSASPSAAESLHGYAVKIGLQWDVF 763
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
G +V++ ++ G ++EA M ++ + V+W ++
Sbjct: 764 VAGALVNIYAKFGRIREARVLFDGMGLR-DVVLWNVMM 800
>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
Length = 938
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 162/350 (46%), Positives = 236/350 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
++ Y ++G + ++R+ TL+DM+ +CG E A +F + R V W+A I +A+ G
Sbjct: 492 IYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGN 551
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+ A+ F+ MIE G+KP+GV F+G L AC H G V +G+ FYSM +G+ P+ HYG
Sbjct: 552 AERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYG 611
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L+EA + I +MP++PN V+W +LL CRV N+++A A+ ++ L P
Sbjct: 612 CMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPE 671
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
G +V+LSN+YA A RW D+A+VR M+ G++K PG SSI + G HEF +GDE+HP+
Sbjct: 672 RTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPE 731
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
I M +++ G++P+ S VL+D++EKEK L RHSEKLA+ +GL+++ GT
Sbjct: 732 MPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGT 791
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDY 351
IRI+KNLRVC DCH+ K S++ NREI++RD NRFH + G CSCGD+
Sbjct: 792 TIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDF 841
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 123/278 (44%), Gaps = 43/278 (15%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G+ +++ V N+L+ Y +CG L+ AR+VF EM ER V +W++MI G A
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRD 214
Query: 61 QAKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
AK+A+ F +M+ + + PN VT + ++ AC + ++ G
Sbjct: 215 FAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETG------------------- 255
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
++ Y FIRN I+ N ++ AL+ ID+A+ R D+
Sbjct: 256 --------------EKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAK---RLFDEYG 298
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVK--KTPGWSSITVDGVVHEFVAGDE 237
N +++ Y + V LM + GV+ + S+I+ + + G
Sbjct: 299 ASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKS 358
Query: 238 THPQAEKI-FQMWEKLLDG---MKLKGYIPNTSVVLLD 271
H + F+ W+ + + M +K + +T+ + D
Sbjct: 359 CHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFD 396
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 33/173 (19%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H Y ++GF +CN LIDMY+KC + A R+F M +TV TW++++ G +G+
Sbjct: 360 HGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEV 419
Query: 63 KEALTSFNKM------------------------IEI--------GIKPNGVTFIGLLHA 90
A +F M IE+ G+ +GVT + + A
Sbjct: 420 DAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASA 479
Query: 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM 143
CGH+G +D + +Y + GI + +VD+ SR G + A ++
Sbjct: 480 CGHLGALDLAKWIYYYIEKN-GIQLDVRLGTTLVDMFSRCGDPESAMSIFNSL 531
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 16/234 (6%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEG---ARRVFIEMEER-TVFTWSAMIQGLAI 58
H + G ++ L+ + G E A+ VF E T F ++++I+G A
Sbjct: 52 HRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYAS 111
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
G EA+ F +M+ GI P+ TF L AC G + + + + G +
Sbjct: 112 SGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQ-IHGLIVKMGYAKDLF 170
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL--- 175
+V + G L A + M + N V W +++ G + D A++A
Sbjct: 171 VQNSLVHFYAECGELDSARKVFDEMSER-NVVSWTSMICG---YARRDFAKDAVDLFFRM 226
Query: 176 ---DQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD 226
+++ P N+ V + + A+ E E +V +RN G++ S VD
Sbjct: 227 VRDEEVTP-NSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVD 279
>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 165/351 (47%), Positives = 233/351 (66%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + +S + NTL+DMY K G + AR+VF ++++ + TW+ M+ A +G
Sbjct: 275 VHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGL 334
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA++ F +M + GI N VTF+ +L AC H G V EG+R+F M EY + P+I+H+
Sbjct: 335 GKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYF-EMMKEYDLEPEIDHFV 393
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+V LL RAG L A FI MPI+P VWGALL CR+HKN + + A+ + +LDP
Sbjct: 394 TVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPD 453
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G V+L NIYA +W+ ARVR++M+ GVKK P S + ++ VH FVA D+THP+
Sbjct: 454 DSGPPVLLYNIYASTGQWDAAARVRRIMKTTGVKKEPACSWVEMENSVHMFVANDDTHPR 513
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
AE+I++MW ++ ++ +GY+P+ VLL ++++E+E L HSEKLAL F L+ P G
Sbjct: 514 AEEIYKMWGQISKKIRKEGYVPDMDYVLLRVDDQEREANLQYHSEKLALAFALIEMPAGA 573
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRIMKN+R+C DCH+AFK IS++ REIVVRD NRFH F GSCSC DYW
Sbjct: 574 TIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSNGSCSCADYW 624
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + S F + + N+LI +Y KCG + AR+VF EM + + +W+++I G A +
Sbjct: 72 KVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQND 131
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ M++ KPNG TF LL A G GR+ +++ + +
Sbjct: 132 MPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQ-IHALAVKCDWHEDVYVG 190
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ +R G + A + K NGV W AL+ G
Sbjct: 191 SALLDMYARCGMMDMATAVFDKLDSK-NGVSWNALISG 227
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 78/156 (50%), Gaps = 2/156 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + + ++ V + L+DMY +CG ++ A VF +++ + +W+A+I G A G
Sbjct: 173 QIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKG 232
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ AL +F +M+ G + T+ + + +G +++G+ M +
Sbjct: 233 DGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAG- 291
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
++D+ +++G + +A + + K + V W +L
Sbjct: 292 NTLLDMYAKSGSMIDARKVFDRVDDK-DLVTWNTML 326
>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
Length = 695
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 168/351 (47%), Positives = 242/351 (68%), Gaps = 12/351 (3%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ V N+LI+MY KCG L A +VF M++R + +W+AMI G A HG+A+EA+ F++M+
Sbjct: 345 DVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMV 404
Query: 74 EI--GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
+ ++PN VTF+GLL AC H G+V++GR++F M +Y I P +EHYGC+VDL++RAG
Sbjct: 405 DKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAG 464
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGC-RVHKNIDLAEEASRQLDQLDPLN-------N 183
++ EA + + +MP+KP+ V+W +LL C + +++L+EE +R + N +
Sbjct: 465 YITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCS 524
Query: 184 GYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAE 243
G +V+LS +YA A RW DV VRKLM G++K PG SSI ++G+ HEF AGD +HPQ +
Sbjct: 525 GAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTK 584
Query: 244 KIFQMWEKLLDGMKLKGYIPNTS-VVLLD-IEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I+Q + + D ++ GY+P+ S L+D + KE L HSE+LA+ FGL+N PP T
Sbjct: 585 QIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQT 644
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH KLIS++ N EI+VRDR RFH F+ GSCSC DYW
Sbjct: 645 PIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 695
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 7/180 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + GF ++ V N LI +Y CGCL+ AR+VF EM ER++ +W++MI L G
Sbjct: 229 QVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFG 288
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR--RFFYSMTTEYGIIPQIE 118
+ AL F +M + +P+G T +L AC +G + G F + + +
Sbjct: 289 EYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVL 347
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++++ + G L+ A + + M K + W A++ G H AEEA D++
Sbjct: 348 VKNSLIEMYCKCGSLRMAEQVFQGMQ-KRDLASWNAMILGFATHGR---AEEAMNFFDRM 403
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 106/267 (39%), Gaps = 46/267 (17%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLAIH-GQAKEALTSFNKMIEIG-IKPNGVTFIGLLHAC 91
A RVF +E + F W+ +I+ A + +EA + KM+E G P+ TF +L AC
Sbjct: 159 AFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKAC 218
Query: 92 GHMGWVDEGRR---------FFYSMTTEYGIIPQIEHYGC-------------------- 122
++ EG++ F + G+I GC
Sbjct: 219 AYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWN 278
Query: 123 -MVDLLSRAGFLQEAYEFIRNM--PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
M+D L R G A + R M +P+G ++L C ++ L A L +
Sbjct: 279 SMIDALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKC 338
Query: 180 PLNNGYHVVLSNIYAEAE-RWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
++ V++ N E + + ++ + + + W+++ + G T
Sbjct: 339 DVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAM---------ILGFAT 389
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNT 265
H +AE+ +++++D K + PN+
Sbjct: 390 HGRAEEAMNFFDRMVD--KRENVRPNS 414
>gi|296085848|emb|CBI31172.3| unnamed protein product [Vitis vinifera]
Length = 644
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 171/387 (44%), Positives = 243/387 (62%), Gaps = 36/387 (9%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ ++G+ ++ + ++LIDMY KC ++ + RVF + + +W+++I G +G
Sbjct: 258 IHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGM 317
Query: 62 AKEALTSFNKMIEI------------------------------------GIKPNGVTFI 85
E L F +M+ G+KPN V F+
Sbjct: 318 FDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRMEGVKPNYVAFM 377
Query: 86 GLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPI 145
+L AC H G VDE ++F SMT +Y IIP +EHY + DLL R G L+EAYEFI +M I
Sbjct: 378 AVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHI 437
Query: 146 KPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARV 205
+P G VW LL CRVHKNI+LAE+ S++L +DP N G +V+LSNIY+ A RW+D ++
Sbjct: 438 EPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKL 497
Query: 206 RKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNT 265
R MR+ G+KK P S I + VH FVAGD++HP ++I + + LL+ M+ +GY+ +T
Sbjct: 498 RIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDT 557
Query: 266 SVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAAFKLISEI 325
+ VL D+EE++K L HSE+LA+TFG+++TP GT IR+ KNLRVC DCH A K IS+I
Sbjct: 558 TEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISKI 617
Query: 326 VNREIVVRDRNRFHCFQAGSCSCGDYW 352
V REIVVRD +RFH F+ G CSCGD+W
Sbjct: 618 VGREIVVRDNSRFHHFKDGKCSCGDFW 644
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 33/179 (18%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLE-----------------------------GARRVFIE 40
G ++ CN L++MY K LE R+VF
Sbjct: 136 GMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEM 195
Query: 41 MEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG 100
M +R + +W+ +I G A +G ++AL +M ++P+ T +L + +G
Sbjct: 196 MPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKG 255
Query: 101 RRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
+ + G + ++D+ ++ + ++ +P + +G+ W +++ GC
Sbjct: 256 KE-IHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLP-QHDGISWNSIIAGC 312
>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
Length = 562
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 162/346 (46%), Positives = 240/346 (69%), Gaps = 2/346 (0%)
Query: 7 NQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEAL 66
N SG N+ V +LI+MY+KCG L +F +M ++ ++S MI GLA+HG +E L
Sbjct: 219 NVSGL--NVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGL 276
Query: 67 TSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126
F +M+E G++P+ + ++G+L+AC H G V EG + F M E+GI P I+HYGCMVDL
Sbjct: 277 RIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDL 336
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYH 186
+ RAG + EA E I++MP++PN V+W +LL +VH N+ E A++QL +LD +
Sbjct: 337 MGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDY 396
Query: 187 VVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIF 246
VVLSN+YA+A+RWEDVAR R M + G+ + PG+S + V +H FV+ D HPQ+E ++
Sbjct: 397 VVLSNMYAQAQRWEDVARTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVY 456
Query: 247 QMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIM 306
+M ++ +K +GY P+T+ VL D++E+EK++ L HS+KLA+ + L++T G+P+RI+
Sbjct: 457 EMLYQMEWQLKFEGYXPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPVRIV 516
Query: 307 KNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+NLR+C DCH KLIS I +REI VRDR+RFH F+ G+CSC DYW
Sbjct: 517 RNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 562
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 9/166 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + G ++ V N+LI MY KCG + VF +M ER+V +WSA+I A G
Sbjct: 109 QVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLG 168
Query: 61 QAKEALTSFNKMIEIGI-KPNGVTFIGLLHACGHMGWVDEGRR---FFYSMTTEYGIIPQ 116
+ L M G + + +L AC H+G +D GR F + +I +
Sbjct: 169 MWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVE 228
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++++ + G L + + M K N + + ++ G +H
Sbjct: 229 TS----LIEMYLKCGXLYKGMCLFQKMA-KKNKLSYSVMISGLAMH 269
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88
G ++ A +F +M+E F ++ M++G +EAL ++ +M E G+KP+ T+ LL
Sbjct: 36 GSMDYACSIFRQMDEPGSFZFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLL 95
Query: 89 HACGHMGWVDEG 100
AC + V+EG
Sbjct: 96 KACARLPAVEEG 107
>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
Length = 639
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 166/342 (48%), Positives = 227/342 (66%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
+ R++ + N L+DMY KCG LE A +F M +R V +WS M+ GLA +G++ EAL F+
Sbjct: 298 YDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFD 357
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
M G+ PN VT +G+L AC H G V++G +F SM +GI P+ EH+ CMVDLL RA
Sbjct: 358 LMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPEREHHNCMVDLLGRA 417
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190
G L EA EFI M ++P+ V+W LLG CR+HKN LA A+R++ +L+P + G V+LS
Sbjct: 418 GKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAAYAAREILKLEPDDQGARVLLS 477
Query: 191 NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWE 250
N YA+ +W D + K MR+ G++K PG S I ++ VH F+AGD +HP ++ I Q
Sbjct: 478 NTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELEKRVHVFIAGDLSHPCSDTIIQELN 537
Query: 251 KLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLR 310
+L+ +K GY+P T VL D+ ++KE L HSEK+A+ FG M+ G PIRIMKNLR
Sbjct: 538 RLIGRIKSLGYVPQTEFVLQDLPTEQKEDLLKYHSEKMAIVFGTMHAVDGKPIRIMKNLR 597
Query: 311 VCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+C DCHA KL+S+ R IV+RD RFH FQ G+CSCGDYW
Sbjct: 598 ICGDCHAFAKLVSKSEGRVIVIRDPVRFHHFQDGACSCGDYW 639
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 4/157 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + ++G ++ V ++LID YVK G L+G RRVF EM R + W+++I G A G
Sbjct: 190 VHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGD 249
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+ F +M + G N T +L AC M ++ GR+ ++ +Y + +
Sbjct: 250 GVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQ-VHAHVLKYD--RDLILHN 306
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ + G L++A MP + + + W ++ G
Sbjct: 307 ALLDMYCKCGSLEDADALFHRMPQR-DVISWSTMVSG 342
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 6/143 (4%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLA-IHGQAKEALTSFNKMIEI 75
V N+L MY K G L+ A R+F M R V TW+ ++ LA G+ +EAL M
Sbjct: 106 VSNSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRD 165
Query: 76 GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE 135
G+ PN TF +L AC G + ++ T + G+ + ++D + G L
Sbjct: 166 GVAPNAYTFSSVLGACTTPGMLTA----VHASTVKAGLDSDVFVRSSLIDAYVKLGDLDG 221
Query: 136 AYEFIRNMPIKPNGVVWGALLGG 158
M + + VVW +++ G
Sbjct: 222 GRRVFDEM-VTRDLVVWNSIIAG 243
>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
Length = 1274
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 169/343 (49%), Positives = 234/343 (68%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G +CN+LIDMY KCG ++ +R+VF +M R V +W+ MI G IHG KEA T F
Sbjct: 438 GLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLF 497
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
M G P+ VTFI L+ AC H G V EG+ +F +MT +YGI+P++EHY CMVDLL+R
Sbjct: 498 LGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLAR 557
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
G L EAY+FI++MP+K + VWGALLG CR+HKNIDL ++ SR + +L P G V+L
Sbjct: 558 GGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLL 617
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
SNI++ A R+++ A VR + + G KK+PG+S I ++G +H FV GD++HP + I+
Sbjct: 618 SNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHEL 677
Query: 250 EKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNL 309
+ ++ +K GY +TS VL D+EE+EKEK L HSEKLA+ FG+++ I + KNL
Sbjct: 678 DNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNL 737
Query: 310 RVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
RVC DCH A K ++ + NR I+VRD NRFH F+ G CSCG++W
Sbjct: 738 RVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 79/162 (48%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SG ++ N+L+ MY K G + A F E+ + ++ A++ G +G
Sbjct: 328 QLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNG 387
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+EA F KM ++P+ T + L+ AC H+ + G+ S+ G+ +
Sbjct: 388 KAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIR-GLALETSIC 446
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++ G + + + MP + + V W ++ G +H
Sbjct: 447 NSLIDMYAKCGKIDLSRQVFDKMPAR-DVVSWNTMIAGYGIH 487
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G ++ V LID+Y++C AR VF +M R V W+AM+ G A HG A+
Sbjct: 130 GLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHL 189
Query: 70 NKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGR-------RFFYSMTTEYGIIPQIEHYG 121
M + G++PN T + LL G + +G R E +I
Sbjct: 190 LDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGT----- 244
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ ++ L A MP++ N V W AL+GG
Sbjct: 245 ALLDMYAKCKQLVYACRVFHGMPVR-NDVTWSALIGG 280
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 6/162 (3%)
Query: 2 VHEYSNQSGFRRN---IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAI 58
+H Y ++ +N + + L+DMY KC L A RVF M R TWSA+I G +
Sbjct: 224 IHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVL 283
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIG-LLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
+ EA F M+ G+ T + L C + + G + +++ + GI +
Sbjct: 284 CDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQ-LHALIAKSGIHADL 342
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
++ + ++AG + EA F + +K + + +GALL GC
Sbjct: 343 TASNSLLSMYAKAGLINEATMFFDEIAVK-DTISYGALLSGC 383
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 2/141 (1%)
Query: 22 IDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNG 81
++ ++ G L AR+VF + ++A+I+ + G A+ + M+ + PN
Sbjct: 41 LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100
Query: 82 VTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIR 141
TF +L AC + + GR ++ G+ + ++DL R A
Sbjct: 101 YTFPFVLKACSALVDLRAGRT-IHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFA 159
Query: 142 NMPIKPNGVVWGALLGGCRVH 162
MP++ + V W A+L G H
Sbjct: 160 KMPMR-DVVAWNAMLAGYANH 179
>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 989
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 161/352 (45%), Positives = 233/352 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++G+ N LI +Y KCG +E A+R F EM E+ V +W+AMI G + HG
Sbjct: 638 QIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHG 697
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA++ F +M ++G+ PN VTF+G+L AC H+G V+EG +F SM+ E+G++P+ EHY
Sbjct: 698 YGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHY 757
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL RA L A EFI MPI+P+ ++W LL C VHKNI++ E A+R L +L+P
Sbjct: 758 VCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEP 817
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+LSN+YA + +W+ R R++M++ GVKK PG S I V +H F GD HP
Sbjct: 818 EDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHP 877
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
AE+I++ + L + GY+ + +L D+E+++K+ Y HSEKLA+ FGL++
Sbjct: 878 LAEQIYEYIDDLNERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLLSLTNT 937
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR++KNLRVC DCH K +S+I NR IVVRD RFH F+ G CSC DYW
Sbjct: 938 MPIRVIKNLRVCNDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 989
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 90/177 (50%), Gaps = 2/177 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SGF+ N+ VC+ LIDMY K G L+ AR + + E V +W+AMI G H
Sbjct: 436 QIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHD 495
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL F +M GI+ + + F + AC + +++G++ ++ + G +
Sbjct: 496 LFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQ-IHAQSYISGYSEDLSIG 554
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
+V L +R G Q+AY + K N + W AL+ G + + A + Q++Q
Sbjct: 555 NALVSLYARCGRAQDAYLAFEKIDAKDN-ISWNALISGFAQSGHCEEALQVFSQMNQ 610
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 107/230 (46%), Gaps = 8/230 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S SG+ ++ + N L+ +Y +CG + A F +++ + +W+A+I G A G
Sbjct: 537 QIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSG 596
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F++M + G++ N TF + A + + +G++ ++M + G + E
Sbjct: 597 HCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQ-IHAMMIKTGYDSETEAS 655
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
++ L S+ G +++A MP K N V W A++ G H A ++ QL
Sbjct: 656 NVLITLYSKCGSIEDAKREFFEMPEK-NVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGL 714
Query: 181 LNNGYHVVLSNIYAEAERW----EDVARVRKLMRNLGVKKTPGWSSITVD 226
+ N HV + + E ++ R + + G+ P VD
Sbjct: 715 MPN--HVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVD 762
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 121/285 (42%), Gaps = 45/285 (15%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G VCN L+ +Y + G L A ++F +M R +++++I GLA G
Sbjct: 234 QLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRG 293
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ AL F KM +KP+ VT LL AC +G +G++ +S + G+ +
Sbjct: 294 FSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQ-LHSYVIKMGMSSDLIIE 352
Query: 121 GCMVDLLSRA-------------------------------GFLQEAYEFIRNMPIK--- 146
G ++DL + G L E+Y M I+
Sbjct: 353 GSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLM 412
Query: 147 PNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV-VLSNIYAEAERWEDVARV 205
PN + ++L C +DL E+ Q+ + N Y VL ++YA + ++
Sbjct: 413 PNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYA---KHGELDTA 469
Query: 206 RKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWE 250
R +++ L + W+++ H+ A +A K+FQ E
Sbjct: 470 RGILQRLREEDVVSWTAMIAGYTQHDLFA------EALKLFQEME 508
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 4/182 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H GF + VCN LID+Y K G ++ A+ VF + + +W AMI GL+ +G
Sbjct: 133 QIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNG 192
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EA+ F +M + + P F +L AC + G + + ++G+ +
Sbjct: 193 REDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQ-LHGFIVKWGLSSETFVC 251
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE--ASRQLDQL 178
+V L SR G L A + M + + + + +L+ G D A + QLD +
Sbjct: 252 NALVTLYSRWGNLIAAEQIFSKMH-RRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCM 310
Query: 179 DP 180
P
Sbjct: 311 KP 312
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 19/167 (11%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SGF + + LID+Y+ G ++ A ++F ++ V W+ +I GL
Sbjct: 31 KLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKK 90
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A + L F+ MI + P+ TF +L AC G + + +T + I +I H+
Sbjct: 91 LASQVLGLFSLMITENVTPDESTFASVLRACS-------GGKAPFQVTEQ--IHAKIIHH 141
Query: 121 G-------C--MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
G C ++DL S+ G + A + +K + V W A++ G
Sbjct: 142 GFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLK-DSVSWVAMISG 187
>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
Length = 782
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 165/353 (46%), Positives = 234/353 (66%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++GFR + V LI+MY KCG + AR VF +M +R + W++M+ A HG
Sbjct: 430 QIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHG 489
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
E L FN+M G K + V+F+ +L A H G V +G ++F +M ++ I P E Y
Sbjct: 490 YYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELY 549
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMP-IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
GC+VDLL RAG +QEA + + + P+G++W LLG CR H D A+ A+ Q+ + D
Sbjct: 550 GCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERD 609
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P ++G +VVLSN+YA A W+ V R+RKLMR+ GVKK PG SSI + VHEF+ GD +H
Sbjct: 610 PSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSH 669
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ I+ + L M+ GYIP+T ++L D+E++ KE L+ HSE+LA+ FGLM+TPP
Sbjct: 670 PRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLMSTPP 729
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GTP+R++KNLRVC DCH A K IS++ REI+VRD +RFH F+ G CSC DYW
Sbjct: 730 GTPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 782
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 101/227 (44%), Gaps = 4/227 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+HE ++G+ R++ V L+ +Y +C A ++F++M + V TW+ M A +G
Sbjct: 330 IHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGF 389
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEAL F +M G +P T + +L C H+ + +GR+ +S E G ++
Sbjct: 390 RKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQ-IHSHIIENGFRMEMVVET 448
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNID--LAEEASRQLDQLD 179
++++ + G + EA M K + +VW ++LG H D L QLD
Sbjct: 449 ALINMYGKCGKMAEARSVFEKMA-KRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEK 507
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD 226
+ VLS + + ++++ + TP VD
Sbjct: 508 ADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVD 554
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 4/182 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH + GF +N VC LI MY +CG + A++VF +E + VF W+ MI G
Sbjct: 26 RVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQG 85
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
AL F +M E + P VT++ +L+AC + +G + + G +
Sbjct: 86 DYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGME-IHGQILQQGFEGDVFVG 144
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR--QLDQL 178
++++ ++ G ++ A++ + + + + V W A++ C H LA R QLD +
Sbjct: 145 TALINMYNKCGSVRGAWDSFKRLEHR-DVVSWTAMIAACVQHDQFALARWLYRRMQLDGV 203
Query: 179 DP 180
P
Sbjct: 204 VP 205
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 106/249 (42%), Gaps = 14/249 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Q GF ++ V LI+MY KCG + GA F +E R V +W+AMI H Q
Sbjct: 128 IHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQ 187
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A + +M G+ PN +T + +A G ++ EG +F YS+ + + +
Sbjct: 188 FALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEG-KFIYSLVSSRVMESDVRVMN 246
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD-- 179
+++ AG L +A +M + + V W ++ ++N EA R +L
Sbjct: 247 SAMNMFGNAGLLGDARRLFEDM-VDRDVVTWNIVITFYVQNENFG---EAVRLFGRLQQD 302
Query: 180 --PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDE 237
N+ V++ N+Y + +L++ G + + V + E
Sbjct: 303 GIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDR-----DVVVATALMSLYGRCE 357
Query: 238 THPQAEKIF 246
QA KIF
Sbjct: 358 APGQAWKIF 366
>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 168/351 (47%), Positives = 242/351 (68%), Gaps = 12/351 (3%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ V N+LI+MY KCG L A +VF M++R + +W+AMI G A HG+A+EA+ F++M+
Sbjct: 279 DVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMV 338
Query: 74 EI--GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
+ ++PN VTF+GLL AC H G+V++GR++F M +Y I P +EHYGC+VDL++RAG
Sbjct: 339 DKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAG 398
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGC-RVHKNIDLAEEASRQLDQLDPLN-------N 183
++ EA + + +MP+KP+ V+W +LL C + +++L+EE +R + N +
Sbjct: 399 YITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCS 458
Query: 184 GYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAE 243
G +V+LS +YA A RW DV VRKLM G++K PG SSI ++G+ HEF AGD +HPQ +
Sbjct: 459 GAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTK 518
Query: 244 KIFQMWEKLLDGMKLKGYIPNTS-VVLLD-IEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I+Q + + D ++ GY+P+ S L+D + KE L HSE+LA+ FGL+N PP T
Sbjct: 519 QIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQT 578
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH KLIS++ N EI+VRDR RFH F+ GSCSC DYW
Sbjct: 579 PIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 629
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 7/180 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + GF ++ V N LI +Y CGCL+ AR+VF EM ER++ +W++MI L G
Sbjct: 163 QVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFG 222
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR--RFFYSMTTEYGIIPQIE 118
+ AL F +M + +P+G T +L AC +G + G F + + +
Sbjct: 223 EYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVL 281
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++++ + G L+ A + + M K + W A++ G H AEEA D++
Sbjct: 282 VKNSLIEMYCKCGSLRMAEQVFQGMQ-KRDLASWNAMILGFATHGR---AEEAMNFFDRM 337
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 106/267 (39%), Gaps = 46/267 (17%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLAIH-GQAKEALTSFNKMIEIG-IKPNGVTFIGLLHAC 91
A RVF +E + F W+ +I+ A + +EA + KM+E G P+ TF +L AC
Sbjct: 93 AFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKAC 152
Query: 92 GHMGWVDEGRR---------FFYSMTTEYGIIPQIEHYGC-------------------- 122
++ EG++ F + G+I GC
Sbjct: 153 AYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWN 212
Query: 123 -MVDLLSRAGFLQEAYEFIRNM--PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
M+D L R G A + R M +P+G ++L C ++ L A L +
Sbjct: 213 SMIDALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKC 272
Query: 180 PLNNGYHVVLSNIYAEAE-RWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
++ V++ N E + + ++ + + + W+++ + G T
Sbjct: 273 DVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAM---------ILGFAT 323
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNT 265
H +AE+ +++++D K + PN+
Sbjct: 324 HGRAEEAMNFFDRMVD--KRENVRPNS 348
>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
[Vitis vinifera]
Length = 1058
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 165/343 (48%), Positives = 232/343 (67%), Gaps = 1/343 (0%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF + V N+LI MY KCG E VF EM E + TW+A++ G A +G KEA+ F
Sbjct: 717 GFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIF 775
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+M GI P+ ++F+G+L AC H G VDEG F SMT +YGI+P + HY CMVDLL R
Sbjct: 776 EQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGR 835
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
AG+L EA I NMP+KP+ V+W ALLG CR+H+N++L + + +L Q+ + +V+L
Sbjct: 836 AGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLL 895
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
SN++A W+ VA +RKLM++ G+ K PG S I V +H FV GD TH Q E+I+
Sbjct: 896 SNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQIEEIYSAL 955
Query: 250 EKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNL 309
++ + GY+P+T+ VL D+EE++K+ L HSEKLA+ FG+++TP G+PI+I+KNL
Sbjct: 956 KEYYGCFRATGYMPDTNFVLHDVEEEQKQNELLYHSEKLAVVFGILSTPNGSPIQIIKNL 1015
Query: 310 RVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
R+C DCH K +S++ R+I++RD NRFH F+ GSCSCGDYW
Sbjct: 1016 RICGDCHTFMKFMSKVTLRKIIIRDGNRFHHFRDGSCSCGDYW 1058
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 37/209 (17%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCG-------------------------------C 30
+H + ++G + N V N LI MY KCG
Sbjct: 577 IHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYM 636
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90
L+ AR VF +M +R V +W+A+I G + AL F M+ GIKPN +T LL A
Sbjct: 637 LDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSA 696
Query: 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGV 150
CG++G + G + F+++ + G + ++ + + G+ ++ + MP + + +
Sbjct: 697 CGNLGAIKLGEQ-FHALIFKLGFDTFLFVGNSLITMYFKCGY-EDGFCVFEEMP-EHDLI 753
Query: 151 VWGALLGGCRVHKNIDLAEEASRQLDQLD 179
W A+L GC + L +EA + +Q++
Sbjct: 754 TWNAVLVGCAQN---GLGKEAIKIFEQME 779
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 16/185 (8%)
Query: 18 CNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGI 77
CNT I + G +E ARRVF EM +R V +W++MI G + +G+ EA F+ + I
Sbjct: 174 CNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNI 233
Query: 78 KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAY 137
+ T+ LL G ++E R F SMT + + M+ + G L+ A
Sbjct: 234 R----TWTILLTGYAKEGRIEEAREVFESMTER-----NVVSWNAMISGYVQNGDLKNAR 284
Query: 138 EFIRNMPIKPNGVVWGALLGG-CRVHKNIDLAEEASRQLDQLDPLNN-GYHVVLSNIYAE 195
+ MP K N W +++ G C ++ EA DQ+ N+ + V++S
Sbjct: 285 KLFDEMPEK-NVASWNSVVTGYCHCYR----MSEARELFDQMPERNSVSWMVMISGYVHI 339
Query: 196 AERWE 200
++ WE
Sbjct: 340 SDYWE 344
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 83/168 (49%), Gaps = 6/168 (3%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N+ N +I Y + G L+ A+ +F +M + +W+AMI G + +++EAL ++
Sbjct: 488 NVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELH 547
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY--GCMVDLLSRAG 131
G P+ +F L AC ++G V+ G R +S+ + G Q Y ++ + ++ G
Sbjct: 548 RSGSVPSDSSFTSALSACANIGDVEIG-RVIHSLAIKTGC--QFNSYVMNGLISMYAKCG 604
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
+++ R + +K + V W +L+ G + +D A ++ + D
Sbjct: 605 NVEDGSHVFRTIRVK-DTVSWNSLISGLSENYMLDDARVVFEKMPKRD 651
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+NIR L+ Y K G +E AR VF M ER V +W+AMI G +G K A F++M
Sbjct: 231 KNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEM 290
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM 107
E + G H C M E R F M
Sbjct: 291 PEKNVASWNSVVTGYCH-CYRMS---EARELFDQM 321
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 102/233 (43%), Gaps = 27/233 (11%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN T+I + +CG L+ A +++ + E+TV T +AM+ A G+ ++A F+++
Sbjct: 425 RNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEI 484
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ PN V + ++ G + E + F M + + M+ AGF
Sbjct: 485 ----LNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMP-----VKNSASWAAMI-----AGF 530
Query: 133 LQ-----EAYEFIRNMPIK---PNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNG 184
+Q EA E + + P+ + + L C ++++ + N
Sbjct: 531 VQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNS 590
Query: 185 YHVV-LSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGD 236
Y + L ++YA+ ED + V + +R VK T W+S+ + G+ ++ D
Sbjct: 591 YVMNGLISMYAKCGNVEDGSHVFRTIR---VKDTVSWNSL-ISGLSENYMLDD 639
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
+S RN+ N +I YV+ G L+ AR++F EM E+ V +W++++ G + EA
Sbjct: 257 ESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARE 316
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM 107
F++M E N V+++ ++ H+ E F M
Sbjct: 317 LFDQMPE----RNSVSWMVMISGYVHISDYWEAWDVFVKM 352
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 66/166 (39%), Gaps = 6/166 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+N+ N+++ Y C + AR +F +M ER +W MI G EA F KM
Sbjct: 293 KNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKM 352
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+P+ F+ +L A + + E + + G + +++ +R G
Sbjct: 353 CRTVARPDQSIFVVVLSAITGLDDL-ELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGS 411
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGG---C-RVHKNIDLAEEASRQ 174
L A F MP + N W ++ C R+ I L E Q
Sbjct: 412 LDLAMHFFETMPER-NEYSWTTMIAAFAQCGRLDDAIQLYERVPEQ 456
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 84/191 (43%), Gaps = 17/191 (8%)
Query: 40 EMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDE 99
E + +F + IQ L G+ +EA FN+MI+ + V++ +++ G VDE
Sbjct: 165 ETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDV----VSWNSMINGYSQNGKVDE 220
Query: 100 GRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
R F + + I + ++ ++ G ++EA E +M + N V W A++ G
Sbjct: 221 ARLLFDAFVGK-----NIRTWTILLTGYAKEGRIEEAREVFESM-TERNVVSWNAMISG- 273
Query: 160 RVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPG 219
+N DL + A + D++ N + Y R ++ R+L + + +
Sbjct: 274 -YVQNGDL-KNARKLFDEMPEKNVASWNSVVTGYCHCYR---MSEARELFDQMPERNSVS 328
Query: 220 WSSITVDGVVH 230
W + + G VH
Sbjct: 329 W-MVMISGYVH 338
>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
Length = 648
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 164/351 (46%), Positives = 234/351 (66%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y ++ G ++ + LIDMY KCG +E AR VF M E+ WSAMI G AIHG
Sbjct: 299 VHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGL 358
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL F++M+E+ ++PN VTFIG+L AC H G V++GRR+ +S+ GI P +E+YG
Sbjct: 359 VEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRY-WSIMQNLGIKPSMENYG 417
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL R+G L +AY F+ MP+ PN V+W LL C+ ID+AE A+++L +L+P
Sbjct: 418 CMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPH 477
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N +V+LSN+YA +W+ V+ +R+ M+ V G SSI ++G +HEFV D++HP+
Sbjct: 478 NPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPE 537
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I + ++ D ++ G+ P T+ VL D+ E+EKE L +HSE+LA+ +GL+ T
Sbjct: 538 IREIRLVLREMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPH 597
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR++KNLR C DCH K+IS+ NREIVVRDR RFH F GSCSC D+W
Sbjct: 598 VIRVVKNLRFCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 648
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 139/298 (46%), Gaps = 27/298 (9%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIH 59
++H + + G + V L+++Y KC + AR VF M ++ + WSAM+ G +
Sbjct: 196 QLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRV 255
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G EAL F +M +G++P+ VT + ++ AC G +D G ++ ++ GI +E
Sbjct: 256 GMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLG-KWVHAYIDRKGITVDLEL 314
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA----SRQL 175
++D+ ++ G ++ A M ++ + W A++ G +H L E+A SR L
Sbjct: 315 STALIDMYAKCGLIERARGVFDAM-VEKDTKAWSAMIVGFAIH---GLVEDALGLFSRML 370
Query: 176 D-QLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGV------ 228
+ ++ P N + VLS A + ED R +M+NLG+K + VD +
Sbjct: 371 ELKVRPNNVTFIGVLSAC-AHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLL 429
Query: 229 --VHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIP---NTSVVLLDIEEKEKEKFL 281
+ FV G P + +W LL K I + + LL++E E ++
Sbjct: 430 DDAYSFVIGMPVSPNS----VIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYV 483
>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 160/343 (46%), Positives = 226/343 (65%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G+ + + N L+DMY KC + A+ +F EM + V +W+++I G A HG A+EALT +
Sbjct: 274 GYESCLFISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAEEALTLY 333
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+ M+ G+KPN VTF+GL++AC H+G V +GR F SM ++GI P ++HY C++DL SR
Sbjct: 334 DDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSR 393
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
+G L EA IR MP+KP+ W ALL C+ H N +A + L L P + +++L
Sbjct: 394 SGHLDEAENLIRTMPVKPDEPTWAALLSACKHHGNTKMAVRIADHLLDLKPEDPSSYILL 453
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
SNIYA A WE+V+ VRKLM VKK PG+S + + F AG+ + P ++I +
Sbjct: 454 SNIYAGAGMWENVSMVRKLMAVKEVKKVPGYSCVDLGREFQVFHAGEASQPMKDEILGLM 513
Query: 250 EKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNL 309
KL M+ +GY+P+TS VLLD++++EKE+ L+ HSE+LAL +GL+ PGT IRI+KNL
Sbjct: 514 TKLDSEMRRRGYVPDTSSVLLDMDQQEKERQLFWHSERLALAYGLLKAVPGTTIRIVKNL 573
Query: 310 RVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
RVC DCH KLIS I +REI VRD R+H F+ G CSC D+W
Sbjct: 574 RVCGDCHTVLKLISAITSREIYVRDVKRYHHFKDGKCSCNDFW 616
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 76/190 (40%), Gaps = 33/190 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SG + TLID Y KCG L+ A ++F + ++ W+ ++ +
Sbjct: 29 KLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNLSN 88
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG------RRFFYSMTTEYGII 114
+A + ++ G++P+ F L+ AC ++G V RF S E ++
Sbjct: 89 LPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDVV 148
Query: 115 P----------QIEHYG----------------CMVDLLSRAGFLQEAYEFIRNMPIKPN 148
++ YG M+ +R+G EA E R P K N
Sbjct: 149 KSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFK-N 207
Query: 149 GVVWGALLGG 158
W AL+ G
Sbjct: 208 LYAWTALISG 217
>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
[Vitis vinifera]
gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 162/346 (46%), Positives = 240/346 (69%), Gaps = 2/346 (0%)
Query: 7 NQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEAL 66
N SG N+ V +LI+MY+KCG L +F +M ++ ++S MI GLA+HG +E L
Sbjct: 262 NVSGL--NVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGL 319
Query: 67 TSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126
F +M+E G++P+ + ++G+L+AC H G V EG + F M E+GI P I+HYGCMVDL
Sbjct: 320 RIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDL 379
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYH 186
+ RAG + EA E I++MP++PN V+W +LL +VH N+ E A++QL +LD +
Sbjct: 380 MGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDY 439
Query: 187 VVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIF 246
VVLSN+YA+A+RWEDVA+ R M + G+ + PG+S + V +H FV+ D HPQ+E ++
Sbjct: 440 VVLSNMYAQAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVY 499
Query: 247 QMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIM 306
+M ++ +K +GY P+T+ VL D++E+EK++ L HS+KLA+ + L++T G+PIRI+
Sbjct: 500 EMLYQMEWQLKFEGYSPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPIRIV 559
Query: 307 KNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+NLR+C DCH KLIS I +REI VRDR+RFH F+ G+CSC DYW
Sbjct: 560 RNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 605
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 9/166 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + G ++ V N+LI MY KCG + VF +M ER+V +WSA+I A G
Sbjct: 152 QVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLG 211
Query: 61 QAKEALTSFNKMIEIGI-KPNGVTFIGLLHACGHMGWVDEGRR---FFYSMTTEYGIIPQ 116
+ L M G + + +L AC H+G +D GR F + +I +
Sbjct: 212 MWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVE 271
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++++ + G L + + M K N + + ++ G +H
Sbjct: 272 TS----LIEMYLKCGSLYKGMCLFQKMA-KKNKLSYSVMISGLAMH 312
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88
G ++ A +F +M+E F ++ M++G +EAL ++ +M E G+KP+ T+ LL
Sbjct: 79 GSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLL 138
Query: 89 HACGHMGWVDEG 100
AC + V+EG
Sbjct: 139 KACARLPAVEEG 150
>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
Length = 1174
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 169/343 (49%), Positives = 234/343 (68%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G +CN+LIDMY KCG ++ +R+VF +M R V +W+ MI G IHG KEA T F
Sbjct: 438 GLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLF 497
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
M G P+ VTFI L+ AC H G V EG+ +F +MT +YGI+P++EHY CMVDLL+R
Sbjct: 498 LGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLAR 557
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
G L EAY+FI++MP+K + VWGALLG CR+HKNIDL ++ SR + +L P G V+L
Sbjct: 558 GGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLL 617
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
SNI++ A R+++ A VR + + G KK+PG+S I ++G +H FV GD++HP + I+
Sbjct: 618 SNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHEL 677
Query: 250 EKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNL 309
+ ++ +K GY +TS VL D+EE+EKEK L HSEKLA+ FG+++ I + KNL
Sbjct: 678 DNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNL 737
Query: 310 RVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
RVC DCH A K ++ + NR I+VRD NRFH F+ G CSCG++W
Sbjct: 738 RVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 79/162 (48%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SG ++ N+L+ MY K G + A F E+ + ++ A++ G +G
Sbjct: 328 QLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNG 387
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+EA F KM ++P+ T + L+ AC H+ + G+ S+ G+ +
Sbjct: 388 KAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIR-GLALETSIC 446
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++ G + + + MP + + V W ++ G +H
Sbjct: 447 NSLIDMYAKCGKIDLSRQVFDKMPAR-DVVSWNTMIAGYGIH 487
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G ++ V LID+Y++C AR VF +M R V W+AM+ G A HG A+
Sbjct: 130 GLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHL 189
Query: 70 NKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGR-------RFFYSMTTEYGIIPQIEHYG 121
M + G++PN T + LL G + +G R E +I
Sbjct: 190 LDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGT----- 244
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ ++ L A MP++ N V W AL+GG
Sbjct: 245 ALLDMYAKCKQLVYACRVFHGMPVR-NDVTWSALIGG 280
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 6/162 (3%)
Query: 2 VHEYSNQSGFRRN---IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAI 58
+H Y ++ +N + + L+DMY KC L A RVF M R TWSA+I G +
Sbjct: 224 IHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVL 283
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIG-LLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
+ EA F M+ G+ T + L C + + G + +++ + GI +
Sbjct: 284 CDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQ-LHALIAKSGIHADL 342
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
++ + ++AG + EA F + +K + + +GALL GC
Sbjct: 343 TASNSLLSMYAKAGLINEATMFFDEIAVK-DTISYGALLSGC 383
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 2/141 (1%)
Query: 22 IDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNG 81
++ ++ G L AR+VF + ++A+I+ + G A+ + M+ + PN
Sbjct: 41 LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100
Query: 82 VTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIR 141
TF +L AC + + GR ++ G+ + ++DL R A
Sbjct: 101 YTFPFVLKACSALVDLRAGRT-IHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFA 159
Query: 142 NMPIKPNGVVWGALLGGCRVH 162
MP++ + V W A+L G H
Sbjct: 160 KMPMR-DVVAWNAMLAGYANH 179
>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1047
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 154/352 (43%), Positives = 231/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH ++G+ VCN +I MY KCG + A++ F+E+ + +W+AMI + HG
Sbjct: 696 QVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHG 755
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL SF++MI ++PN VT +G+L AC H+G VD+G +F SM TEYG+ P+ EHY
Sbjct: 756 FGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHY 815
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VD+L+RAG L A +FI MPI+P+ +VW LL C VHKN+++ E A+ L +L+P
Sbjct: 816 VCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEP 875
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+LSN+YA +W+ R+ M+ GVKK PG S I V +H F GD+ HP
Sbjct: 876 EDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHP 935
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
A++I + ++ L GY+ + +L ++++++K+ ++ HSEKLA++FGL++ P
Sbjct: 936 LADEIHEYFKDLTKRASEIGYVQDCFSLLSELQQEQKDPTIFIHSEKLAISFGLLSLPAT 995
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PI +MKNLRVC DCH K +S++ NREI+VRD RFH F+ G+CSC DYW
Sbjct: 996 MPINVMKNLRVCNDCHDWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1047
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 5/179 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ F+ N VC+ LIDMY K G L+ A + I + V +W+ MI G +
Sbjct: 494 QIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYN 553
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ALT+F +M++ GI+ + V + AC + + EG++ ++ G +
Sbjct: 554 FDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-IHAQACVSGFSSDLPFQ 612
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
+V L S+ G ++EAY N + W AL+ G + N EEA R +++
Sbjct: 613 NALVTLYSKCGNIEEAYLAFEQTEAGDN-IAWNALVSGFQQSGN---NEEALRVFARMN 667
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 1/158 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + GF N + L+D Y+ G L+GA +VF EM ERT+FTW+ MI+ LA
Sbjct: 89 KLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELASRS 148
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ + F +M+ + PN TF G+L AC + ++ G+
Sbjct: 149 LSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVC 208
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++DL SR GF+ A + +K + W A++ G
Sbjct: 209 NPLIDLYSRNGFVDRARRVFDGLYLKDHS-SWVAMISG 245
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 75/147 (51%), Gaps = 2/147 (1%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF + VCN L+ +Y G L A +F M +R T++ +I GL+ G ++A+ F
Sbjct: 301 GFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELF 360
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+M G++P+ T L+ AC G + G++ ++ TT+ G + G +++L ++
Sbjct: 361 KRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQ-LHAYTTKLGFASNDKIEGALLNLYAK 419
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALL 156
++ A + ++ N V+W +L
Sbjct: 420 CSDIETALNYFLETEVE-NVVLWNVML 445
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 5/178 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + SGF ++ N L+ +Y KCG +E A F + E W+A++ G G
Sbjct: 595 QIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSG 654
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F +M GI N TF + A + +G++ +++ T+ G + E
Sbjct: 655 NNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQ-VHAVITKTGYDSETEVC 713
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++ + ++ G + +A + + +K N V W A++ H EA DQ+
Sbjct: 714 NAIISMYAKCGSISDAKKQFLELSMK-NEVSWNAMINAYSKH---GFGSEALDSFDQM 767
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 4/185 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H G ++ VCN LID+Y + G ++ ARRVF + + +W AMI GL+ +
Sbjct: 191 QIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNE 250
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA+ F M +GI P F +L AC + ++ G + + + + G
Sbjct: 251 CEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQ-LHGLVLKLGFSSDTYVC 309
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR--QLDQL 178
+V L G L A NM + + V + L+ G + A E + QLD L
Sbjct: 310 NALVSLYFHLGSLISAEHIFSNMS-QRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGL 368
Query: 179 DPLNN 183
+P +N
Sbjct: 369 EPDSN 373
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 82/178 (46%), Gaps = 8/178 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y+ + GF N ++ L+++Y KC +E A F+E E V W+ M+ +
Sbjct: 393 QLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLD 452
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMT-TEYGIIPQIEH 119
+ + F +M I PN T+ +L C +G ++ G + + T + Q+
Sbjct: 453 DLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSF----QLNA 508
Query: 120 YGC--MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
Y C ++D+ ++ G L A++ + K + V W ++ G + D A RQ+
Sbjct: 509 YVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAGYTQYNFDDKALTTFRQM 565
>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
gi|223948835|gb|ACN28501.1| unknown [Zea mays]
Length = 599
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 164/351 (46%), Positives = 234/351 (66%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y ++ G ++ + LIDMY KCG +E AR VF M E+ WSAMI G AIHG
Sbjct: 250 VHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGL 309
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL F++M+E+ ++PN VTFIG+L AC H G V++GRR+ +S+ GI P +E+YG
Sbjct: 310 VEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRY-WSIMQNLGIKPSMENYG 368
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL R+G L +AY F+ MP+ PN V+W LL C+ ID+AE A+++L +L+P
Sbjct: 369 CMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPH 428
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N +V+LSN+YA +W+ V+ +R+ M+ V G SSI ++G +HEFV D++HP+
Sbjct: 429 NPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPE 488
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I + ++ D ++ G+ P T+ VL D+ E+EKE L +HSE+LA+ +GL+ T
Sbjct: 489 IREIRLVLREMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPH 548
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR++KNLR C DCH K+IS+ NREIVVRDR RFH F GSCSC D+W
Sbjct: 549 VIRVVKNLRFCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 599
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 139/298 (46%), Gaps = 27/298 (9%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIH 59
++H + + G + V L+++Y KC + AR VF M ++ + WSAM+ G +
Sbjct: 147 QLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRV 206
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G EAL F +M +G++P+ VT + ++ AC G +D G ++ ++ GI +E
Sbjct: 207 GMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLG-KWVHAYIDRKGITVDLEL 265
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA----SRQL 175
++D+ ++ G ++ A M ++ + W A++ G +H L E+A SR L
Sbjct: 266 STALIDMYAKCGLIERARGVFDAM-VEKDTKAWSAMIVGFAIH---GLVEDALGLFSRML 321
Query: 176 D-QLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGV------ 228
+ ++ P N + VLS A + ED R +M+NLG+K + VD +
Sbjct: 322 ELKVRPNNVTFIGVLSAC-AHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLL 380
Query: 229 --VHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIP---NTSVVLLDIEEKEKEKFL 281
+ FV G P + +W LL K I + + LL++E E ++
Sbjct: 381 DDAYSFVIGMPVSPNS----VIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYV 434
>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
Length = 687
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 161/352 (45%), Positives = 237/352 (67%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y + F +++ L+ MY KCG LE +RRVF M +R +W+ MI ++HG
Sbjct: 336 QIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHG 395
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F +M++ G++PN VTF G+L C H VDEG F SM+ ++ + P +H+
Sbjct: 396 NGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHH 455
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVD+LSRAG L+EAYEFI+ MPI+P WGALLGGCRV+KN++L A+ +L +++
Sbjct: 456 SCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIES 515
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +V+LSNI A+ W + + RKLMR+ GV K PG S I V VH FV GD+++
Sbjct: 516 DNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQVRNRVHTFVVGDKSND 575
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q+++I++ + + + M++ GY+PNT VL D++++EKE+ L HSEKLA+ FG++N
Sbjct: 576 QSDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQEEKEEVLCNHSEKLAVAFGVLNLNGE 635
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ IR+ KNLR+C DCH A K +++IV +I+VRD RFH F+ G CSC D+W
Sbjct: 636 SSIRVFKNLRICGDCHNAIKFMAKIVGVKIIVRDSLRFHHFRDGLCSCQDFW 687
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 84/192 (43%), Gaps = 33/192 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVHE + + GF ++ + N LIDMY KC C EGAR VF M R V +W++M G
Sbjct: 99 RVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCG 158
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR-------------RFFYS- 106
+EAL +F KM G +PN VT +L AC + + GR F S
Sbjct: 159 LLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSS 218
Query: 107 -MTTEYGIIPQIEHYGCMVDLLSR-----------AGFLQEAYE-----FIRNMP--IKP 147
+ Y I + D +SR A FL + E F R M +
Sbjct: 219 ALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGL 278
Query: 148 NGVVWGALLGGC 159
N W A++GGC
Sbjct: 279 NYASWNAVIGGC 290
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 67/152 (44%), Gaps = 6/152 (3%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG-IKP 79
I +Y G L+ AR +F ++ + + TW+ +I L HG++ EA+ +N ++P
Sbjct: 17 FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEP 76
Query: 80 NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEF 139
+ + + + AC + V +R + +G + ++D+ + + A
Sbjct: 77 DKLLLLSVAKACASLRDVMNAKR-VHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLV 135
Query: 140 IRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
MP + + + W + + C V N L EA
Sbjct: 136 FEGMPFR-DVISWTS-MASCYV--NCGLLREA 163
>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
Length = 613
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 169/352 (48%), Positives = 233/352 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H++ + RN+ V +L+ MY KCG L A +F EM R V W+AMI G A HG
Sbjct: 262 QIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHG 321
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
KEA+ F +M + G++PN +TF+ +L AC H G D G + F M YGI P+++HY
Sbjct: 322 DGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHY 381
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG L+ A +FIR+MP +P+ +G LL CRV+KN++ AE A+ +L + DP
Sbjct: 382 SCMVDLLCRAGKLERAVDFIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDP 441
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ G +V L+NIYA A +W+DV+RVR+ M++ V KTPG+S I + GV+HEF + D HP
Sbjct: 442 QSAGAYVQLANIYAVANQWDDVSRVRRWMKDNTVVKTPGYSWIEIKGVLHEFRSNDRLHP 501
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q I + +L + MK GY+P+ VL D++E K + L RHSEKLA+ FGL++T G
Sbjct: 502 QLYLIHEKLGQLAERMKEMGYVPDLDFVLHDVDETMKVQMLMRHSEKLAIAFGLISTAHG 561
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+RI KNLRVC DCH A K+IS I +REI++RD RFH F+ G CSC DYW
Sbjct: 562 MTLRIFKNLRVCGDCHNAAKVISMIEDREIILRDTTRFHHFRGGHCSCDDYW 613
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 12/151 (7%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ NT++ K G +E A+ VF+ M R +W+AM+ G A G A F
Sbjct: 109 RDVASWNTMVSGLSKSGAVEEAKVVFLAMPVRNSVSWNAMVSGFACSGDMSTAEEWFRNA 168
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E K + V + ++ +G V + ++F +M + + + +V +
Sbjct: 169 PE---KEDAVLWTAMVSGYMDIGNVVKAIKYFEAMP-----VRNLVSWNAVVAGYVKNSH 220
Query: 133 LQEAYEFIRNM----PIKPNGVVWGALLGGC 159
+A R M ++PN ++L GC
Sbjct: 221 ADDALRLFRTMVREANVQPNASTLSSVLLGC 251
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 40/140 (28%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NTL+ + G +GARR+F M R V +W+ M+ GL+ G
Sbjct: 84 NTLLLCHFASGDADGARRLFASMPVRDVASWNTMVSGLSKSGA----------------- 126
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
V+E + F +M + + MV + +G + A E
Sbjct: 127 ------------------VEEAKVVFLAMPVRNSV-----SWNAMVSGFACSGDMSTAEE 163
Query: 139 FIRNMPIKPNGVVWGALLGG 158
+ RN P K + V+W A++ G
Sbjct: 164 WFRNAPEKEDAVLWTAMVSG 183
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 165/344 (47%), Positives = 229/344 (66%), Gaps = 1/344 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y N + N V L+DMY KCG + A +VF ME + V W+ +I G+AIHG
Sbjct: 216 LHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGH 275
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA F +M E ++PN +TF+ +L AC H G VDEG++ M++ YGI P++EHY
Sbjct: 276 VKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYD 335
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C++DLL+RAG L+EA E I MP++PN GALLGGCR+H N +L E ++L L P
Sbjct: 336 CVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPC 395
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +++LSNIYA A++W+D +VR LM+ G+ K PG S I + G+VH FVAGD +HP+
Sbjct: 396 HSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPE 455
Query: 242 AEKIFQMWEKLLDGMKLK-GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ KI+ ++ +K GY +T VLLD+EE++KE L HSEKLA+ +GL++
Sbjct: 456 SNKIYDKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSK 515
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAG 344
IRI+KNLRVC DCH KLIS++ REI+VRDRNRFH F+ G
Sbjct: 516 EAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDG 559
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 87/165 (52%), Gaps = 2/165 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ N+++ +VKCG +E A +F EM R V +W++M+ A G+ EAL F++M
Sbjct: 126 RNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQM 185
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+G+KP T + LL AC H+G +D+G + + I +VD+ ++ G
Sbjct: 186 RAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTA-LVDMYAKCGK 244
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
+ A + M K + + W ++ G +H ++ A++ +++ +
Sbjct: 245 ISLATQVFNAMESK-DVLAWNTIIAGMAIHGHVKEAQQLFKEMKE 288
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 74/156 (47%), Gaps = 10/156 (6%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + +SGF + + N+LI +Y L A+++F +R V +W+AMI G G+
Sbjct: 22 VHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGYVKRGE 81
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
F++M+ + +++ +++ +G +DE +R F M + +
Sbjct: 82 MGHTRMVFDRMVCRDV----ISWNTIINGYAIVGKIDEAKRLFDEMPER-----NLVSWN 132
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
M+ + G ++EA+ MP + + V W ++L
Sbjct: 133 SMLSGFVKCGNVEEAFGLFSEMPCR-DVVSWNSMLA 167
>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 604
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 160/339 (47%), Positives = 234/339 (69%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N+ V +LIDMYVK G LE VF M ++ ++++ +I GLAIHG+ +EAL+ F+ M+
Sbjct: 266 NVAVKTSLIDMYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGREALSVFSDML 325
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
E G+ P+ V ++G+L AC H G V+EG + F + E+ I P I+HYGCMVDL+ RAG L
Sbjct: 326 EEGLAPDDVVYVGVLSACSHAGLVNEGLQCFNRLQFEHKIKPTIQHYGCMVDLMGRAGML 385
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIY 193
+ AY+ I++MPIKPN VVW +LL C+VH N+++ E A+ + +L+ N G ++VL+N+Y
Sbjct: 386 KGAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFKLNQHNPGDYLVLANMY 445
Query: 194 AEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLL 253
A A++W DVAR+R M + +TPG+S + + V++FV+ D++ PQ E I+ M +++
Sbjct: 446 ARAKKWADVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQME 505
Query: 254 DGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCE 313
+K +GY P+ S VLLD++E EK + L HS+KLA+ F L+ T G+ IRI +N+R+C
Sbjct: 506 WQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSRIRISRNIRMCN 565
Query: 314 DCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
DCH K IS I REI VRDRNRFH F+ G+CSC DYW
Sbjct: 566 DCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 604
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++G ++ V N LI+MY KCG +E A VF +M+E++V +WS++I A
Sbjct: 151 QIHAHVFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHASVE 210
Query: 61 QAKEALTSFNKMIEIGI-KPNGVTFIGLLHACGHMGWVDEGR---RFFYSMTTEYGIIPQ 116
E L M G + + L AC H+G + GR +E + +
Sbjct: 211 MWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISELNVAVK 270
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++G L++ +NM K N + ++ G +H
Sbjct: 271 TS----LIDMYVKSGSLEKGLCVFQNMAQK-NRYSYTVIITGLAIH 311
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 72/142 (50%), Gaps = 5/142 (3%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88
G +E A +F ++EE F ++ MI+G +EAL + +M+E GI+P+ T+ +L
Sbjct: 78 GSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVL 137
Query: 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPN 148
AC +G + EG + ++ + G+ + ++++ + G ++ A M K +
Sbjct: 138 KACSLLGALKEGVQ-IHAHVFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEK-S 195
Query: 149 GVVWGALLGGCRVHKNIDLAEE 170
W +++G H ++++ E
Sbjct: 196 VASWSSIIGA---HASVEMWHE 214
>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Glycine max]
Length = 591
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 162/351 (46%), Positives = 234/351 (66%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H Y ++ + N V L+DMY KCGCL A ++F E+ +R F ++AMI G A+HG
Sbjct: 241 AHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVHGH 300
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+AL + M + P+G T + + AC H G V+EG F SM +G+ P++EHYG
Sbjct: 301 GNQALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKLEHYG 360
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C++DLL RAG L+EA E +++MP+KPN ++W +LLG ++H N+++ E A + L +L+P
Sbjct: 361 CLIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHLIELEPE 420
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+G +V+LSN+YA RW DV RVR LM++ GV K PG+S + ++G +HEF+ GD+ HP
Sbjct: 421 TSGNYVLLSNMYASIGRWNDVKRVRMLMKDHGVDKLPGFSLVEINGAMHEFLTGDKAHPF 480
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I+ ++ + G+ P TS VL D+EE++KE FL HSE+LA+ F L+ +
Sbjct: 481 SKEIYSKIGEINRRLLEYGHKPRTSEVLFDVEEEDKEDFLSYHSERLAIAFALIASSSSM 540
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVC DCHA KLIS R+I+VRDRNRFH F+ GSCSC DYW
Sbjct: 541 PIRIIKNLRVCGDCHAITKLISAAYQRDIIVRDRNRFHHFKDGSCSCLDYW 591
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 86/188 (45%), Gaps = 17/188 (9%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ-------------AK 63
V N+L++ Y K G L +R +F ++ E + TW+ M+ A +
Sbjct: 142 VQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAYAQSASHVSYSTSFEDADMSL 201
Query: 64 EALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR-RFFYSMTTEYGIIPQIEHYGC 122
EAL F M IKPN VT + L+ AC ++G + +G Y + + +
Sbjct: 202 EALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQGAWAHGYVLRNNLKLNRFVG--TA 259
Query: 123 MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182
+VD+ S+ G L A + + + + + A++GG VH + + A E R + D +
Sbjct: 260 LVDMYSKCGCLNLACQLFDELSDR-DTFCYNAMIGGFAVHGHGNQALELYRNMKLEDLVP 318
Query: 183 NGYHVVLS 190
+G +V++
Sbjct: 319 DGATIVVT 326
>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 684
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 172/353 (48%), Positives = 231/353 (65%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + ++ NI V + L+DMY KCG +E A +VF E+ ER + TW+AMI G A G
Sbjct: 332 VHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSELPERNLVTWNAMIGGYAHQGD 391
Query: 62 AKEALTSFNKMI--EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
AL F +M GI+P+ VT I +L C +G V+ G + F SM YGI P EH
Sbjct: 392 IDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRLNYGIEPGAEH 451
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
+ C+VDLL R+G + AYEFI+NM I+P VWGALLG CR+H +L + A+ +L +LD
Sbjct: 452 FACVVDLLGRSGLVDRAYEFIQNMAIQPTISVWGALLGACRMHGKTELGKIAAEKLFELD 511
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
+++G HVVLSN+ A A RWE+ VRK M+++G+KK G+S I V +H F A D +H
Sbjct: 512 HVDSGNHVVLSNMLASAGRWEEATVVRKEMKDIGIKKNVGYSWIAVKNRIHVFQAKDSSH 571
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
+ +I M KL GMK GY+P+T++ L D+E++EK ++ HSEK+AL FGL+ P
Sbjct: 572 DRNSEIQAMLGKLRGGMKEAGYVPDTNLSLFDLEDEEKASEVWYHSEKIALAFGLIALPQ 631
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIRI KNLR+C DCH+A K IS IV REI+VRD +RFH F+ G CSC DYW
Sbjct: 632 GVPIRITKNLRICGDCHSAIKFISRIVGREIIVRDNHRFHRFKDGCCSCKDYW 684
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 73/158 (46%), Gaps = 1/158 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G ++ V + DMY K G A +F EM +R + TW+A I
Sbjct: 129 QIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDR 188
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++ +A+ +F + + + +PN +TF L+AC M ++ GR+ ++ G +
Sbjct: 189 RSLDAIVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNLGRQ-LHAFIVRCGYKEDVSVA 247
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D + G + A + + N V W ++L
Sbjct: 248 NGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAA 285
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 4/139 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N L++MY K L A+ V RTV TW+++I G + + AL F M ++
Sbjct: 46 NHLVNMYSKLDLLNSAQHVLSLTHLRTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQ 105
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMV-DLLSRAGFLQEAY 137
PN TF + A + G++ + + + G+I + GC D+ + GF +A
Sbjct: 106 PNDFTFPCVFKASAFVQIPMTGKQ-IHGLALKGGMIYDV-FVGCSCFDMYCKTGFRGDAC 163
Query: 138 EFIRNMPIKPNGVVWGALL 156
MP + N W A +
Sbjct: 164 NMFDEMP-QRNLATWNAYI 181
>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Vitis vinifera]
Length = 913
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 156/351 (44%), Positives = 236/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H S ++GF ++ V LIDMY K L+ A +VF ++ +T+ +W+ MI G AI G
Sbjct: 563 IHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGL 622
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA++ FN+M ++G+ P+ +TF LL AC + G + EG ++F SM T+Y I+P++EHY
Sbjct: 623 GKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYC 682
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG+L EA++ I MP+KP+ +WGALLG CR+HKN+ AE A++ L +L+P
Sbjct: 683 CMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPN 742
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+ ++++ N+Y+ RWED+ +R+LM GV+ WS I ++ VH F + ++ HP
Sbjct: 743 NSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPD 802
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A KI+ +L+ MK GY+P+ + V +++E EK+K L H+EKLA+T+GL+ G
Sbjct: 803 AGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGE 862
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR++KN R+C DCH+A K IS + RE+ +RD RFH F+ G CSC D+W
Sbjct: 863 PIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 913
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 4/161 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H Y ++GF ++ V +LIDMYVK L A+ VF M+ R +F W++++ G + G
Sbjct: 392 THGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGM 451
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL N+M + GIKP+ VT+ G++ G E + T G+ P + +
Sbjct: 452 FEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQ-TKSLGLTPNVVSWT 510
Query: 122 CMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGC 159
++ S+AG +++ +F M + PN LL C
Sbjct: 511 ALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRAC 551
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 1/138 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y + G ++ +CN LI MY K G LE ARRVF ME R +W++MI A G
Sbjct: 255 QIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALG 314
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A + F ++ +KP+ VT+ LL G+ +E M E G P
Sbjct: 315 FLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGE-GFKPNSSSM 373
Query: 121 GCMVDLLSRAGFLQEAYE 138
++ +S GFL E
Sbjct: 374 TSVLQAISELGFLNMGKE 391
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 83/181 (45%), Gaps = 9/181 (4%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE----RTVFTWSAMIQGLAIHGQAK 63
+ G + ++ N +I Y GC + A V + + V +W+A+I G + G +
Sbjct: 464 KEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNR 523
Query: 64 EALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCM 123
++L F +M + G+ PN + LL AC + + +G+ + ++ G I + +
Sbjct: 524 DSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKE-IHCLSIRNGFIEDVFVATAL 582
Query: 124 VDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183
+D+ S++ L+ A++ R + K W ++ G + L +EA +++ +
Sbjct: 583 IDMYSKSSSLKNAHKVFRRIQNK-TLASWNCMIMGFAI---FGLGKEAISVFNEMQKVGV 638
Query: 184 G 184
G
Sbjct: 639 G 639
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 33/188 (17%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
+ GF ++ + L++ Y +C LE A +VF EM W+ I + ++ +
Sbjct: 161 KRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVE 220
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRR-----FFYSMTTEYGII-PQIEHYG 121
F KM +K T + +L ACG MG ++ ++ F + + ++ + P I Y
Sbjct: 221 LFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYS 280
Query: 122 ------------------------CMVDLLSRAGFLQEAYEF---IRNMPIKPNGVVWGA 154
M+ + GFL +A+ + + +KP+ V W
Sbjct: 281 KNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNC 340
Query: 155 LLGGCRVH 162
LL G +H
Sbjct: 341 LLSGHFLH 348
>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Cucumis sativus]
gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Cucumis sativus]
Length = 667
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 159/352 (45%), Positives = 235/352 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++G + V ++LI MY + GCLE + + F++ E V WS+MI HG
Sbjct: 316 QIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHG 375
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +EAL F++M ++ ++ N VTF+ LL+AC H G ++G +F M +Y + P+IEHY
Sbjct: 376 RGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHY 435
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL RAG L+EA IR+MP++P+G++W LL C++HK ++AE S ++ +LDP
Sbjct: 436 TCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAERISEEIIKLDP 495
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
L+ +V+LSNI+A A W +V+++RK MR+ V+K PG S + + +VH+F GD++HP
Sbjct: 496 LDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLELKNLVHQFSMGDKSHP 555
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q +I ++L+ +K GY+P VL D++ +EKE L HSEK A+ F LMNT
Sbjct: 556 QYFEIDLYLKELMSELKQHGYVPELGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSEN 615
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+MKNLRVC+DCH A K IS I NREI+VRD +RFH F+ G CSCG+YW
Sbjct: 616 VPIRVMKNLRVCDDCHNAIKCISRIRNREIIVRDASRFHHFKDGECSCGNYW 667
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 2/147 (1%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
RRN+ N LI+ Y++ G LE A+++F EM ER + TW+AMI GL K+AL+ F +
Sbjct: 125 RRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKE 184
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M +G P+ T +L C + + G+ ++ + G + + ++G
Sbjct: 185 MYGLGFLPDEFTLGSVLRGCAGLRSLLAGQE-VHACLLKCGFELSSVVGSSLAHMYIKSG 243
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGG 158
L + + I++MPI+ V W L+ G
Sbjct: 244 SLSDGEKLIKSMPIR-TVVAWNTLIAG 269
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 7/195 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + GF + V ++L MY+K G L ++ M RTV W+ +I G A +G
Sbjct: 216 VHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGC 275
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+E L +N M G +P+ +TF+ +L AC + + +G++ ++ + G +
Sbjct: 276 PEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQ-IHAEVIKAGASSVLAVVS 334
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNG--VVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
++ + SR+G L+++ I+ + N V+W +++ H + A E Q++ L
Sbjct: 335 SLISMYSRSGCLEDS---IKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLK 391
Query: 180 PLNNGYHVVLSNIYA 194
N LS +YA
Sbjct: 392 MEANEV-TFLSLLYA 405
>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 637
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 236/352 (67%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + GF ++ +L+DMY K G ++ AR +F ++ +R + +W+AMI G +HG
Sbjct: 286 LHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGH 345
Query: 62 AKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A EAL FNKM + + P+ +TF+G+L AC H G V+E + FFY M Y I P ++HY
Sbjct: 346 ADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHY 405
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C++D+L G +EAY+ I+ M I+P+ +WGALL GC++HKN++L E A ++L +L+P
Sbjct: 406 TCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIHKNVELGELALQKLIELEP 465
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ G +V LSNIYA++ +WE ARVRKLM N G+KK S I + G H F+ GD +HP
Sbjct: 466 EDAGNYVHLSNIYAQSGKWEKAARVRKLMTNRGLKKILACSWIELKGKTHGFLVGDASHP 525
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++++I+ E+L M GY+P+ V ++++ EK + HSE+LA+ FGL++TPPG
Sbjct: 526 RSDEIYGELERLEGLMSDAGYVPDIIPVFHNVDDDEKRNMVRSHSERLAIAFGLISTPPG 585
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T + + KNLRVCEDCH KLIS+IV REI++RD NR+H F G CSC DYW
Sbjct: 586 TKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 123/289 (42%), Gaps = 19/289 (6%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+ + + + +++ VC ++DMY KCGC++ AR VF + R W++MI +G+
Sbjct: 185 VHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGR 244
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL M GI P T + + A + GR + G Q +
Sbjct: 245 PMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRE-LHGFGWRRGFGLQDKLKT 303
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLD---QL 178
+VD+ +++G++Q A + +K V W A++ G +H + D A ++ Q+
Sbjct: 304 SLVDMYAKSGWVQVARVLFEQL-MKRELVSWNAMICGYGMHGHADEALALFNKMKGDAQV 362
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRN-LGVKKTPGWSSITVDGVVH------- 230
P N + VLS E+ LM N +K T + +D + H
Sbjct: 363 TPDNITFVGVLSAC-NHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVIDVLGHTGRFEEA 421
Query: 231 -EFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKE 278
+ + G P + +W LL+G K+ + + L + E E E
Sbjct: 422 YDLIKGMSIEPDS----GIWGALLNGCKIHKNVELGELALQKLIELEPE 466
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 78/151 (51%), Gaps = 4/151 (2%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
SG + + L+D+Y CG + ARR+F M +R VF W+ +I+ A G + A+
Sbjct: 91 SGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRL 150
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMT-TEYGIIPQIEHYGCMVDLL 127
+ M+E G++P+ T+ +L AC + ++ GR ++ T +G + +VD+
Sbjct: 151 YRGMVEHGVEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWG--QDVFVCAGVVDMY 208
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ G + +A + ++ + VVW +++
Sbjct: 209 AKCGCVDDARAVFDGIAVR-DAVVWNSMIAA 238
>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
Length = 681
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 162/352 (46%), Positives = 229/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + F + V + L+DMY KCG LE A + F E+ + T W++++ HG
Sbjct: 330 QLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHG 389
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
K+A+ F +M++ G+KPN +TFI LL C H G V+EG +FYSM YG++P EHY
Sbjct: 390 LGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHY 449
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C++DLL RAG L+EA EFI MP +PN W + LG CR+H + ++ + A+ +L +L+P
Sbjct: 450 SCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEP 509
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G V+LSNIYA +WEDV VR MR+ VKK PG+S + V H F A D +H
Sbjct: 510 KNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHX 569
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ I++ + LLD +K GY+P T V LD+++ KEK L+RHSE++A+ F L++ P G
Sbjct: 570 RKSAIYEKLDXLLDQIKAAGYVPXTDSVPLDMDDXMKEKLLHRHSERIAVAFALISMPIG 629
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PI + KNLRVC DCH+A K IS++ R+I+VRD +RFH F GSCSCGDYW
Sbjct: 630 KPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 81/150 (54%), Gaps = 2/150 (1%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
+G+ + N L++MY KCG L+ A ++F M +R + +W+AMI GL+ + + EA+ +
Sbjct: 34 AGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRT 93
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
F M G P F + AC +G ++ G++ + + ++GI ++ + D+ S
Sbjct: 94 FCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQ-MHCLALKFGIGSELFVGSNLEDMYS 152
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ G + +A + MP K + V W A++ G
Sbjct: 153 KCGAMFDACKVFEEMPCK-DEVSWTAMIDG 181
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 100/230 (43%), Gaps = 8/230 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G + V + L DMY KCG + A +VF EM + +W+AMI G + G
Sbjct: 127 QMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIG 186
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +EAL +F KMI+ + + L ACG + GR +S + G I
Sbjct: 187 EFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRS-VHSSVVKLGFESDIFVG 245
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC----RVHKNIDLAEEASRQLD 176
+ D+ S+AG ++ A N V + L+ G ++ K + + E RQ
Sbjct: 246 NALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQ-- 303
Query: 177 QLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD 226
++P N L A E ++ + + + P SSI VD
Sbjct: 304 GIEP-NEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVD 352
>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
[Vitis vinifera]
Length = 799
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 166/352 (47%), Positives = 228/352 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + GF ++ N LI MY KCG +E A +F+ M +W+AMI L HG
Sbjct: 448 QLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHG 507
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+AL F M++ I P+ +TF+ +L C H G V+EG R+F SM+ YGI P +HY
Sbjct: 508 HGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHY 567
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
M+DLL RAG EA + I MP++P +W ALL GCR+H N+DL +A+ +L +L P
Sbjct: 568 ARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMP 627
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++G +V+LSN+YA RW+DVA+VRKLMR+ GVKK PG S I V+ VH F+ D HP
Sbjct: 628 QHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDDIVHP 687
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ + ++ E+L M+ GYIP+T VL D+E ++KE L HSEKLA+ FGL+ P G
Sbjct: 688 EVQAVYNYLEELGLKMRKLGYIPDTKFVLHDMESEQKEYVLSTHSEKLAVGFGLLKLPLG 747
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+R+ KNLR+C DCH AFK +S++V REIVVRD RFH F+ G CSCG+YW
Sbjct: 748 ATVRVFKNLRICGDCHNAFKFMSKVVEREIVVRDGKRFHHFKNGECSCGNYW 799
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 2/144 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N ++ YV G ++ A+ F EM ER + TW+ MI GLA +G +E+L FN+M G +
Sbjct: 365 NAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFE 424
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P F G + AC + + GR+ ++ G + ++ + ++ G ++ A+
Sbjct: 425 PCDYAFAGAIIACAWLAALMHGRQ-LHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHC 483
Query: 139 FIRNMPIKPNGVVWGALLGGCRVH 162
MP + V W A++ H
Sbjct: 484 LFLTMPYL-DSVSWNAMIAALGQH 506
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 4/167 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
T+I YV+ G L+ AR+ M E+ V W+AMI G HG EAL F KM +GI+
Sbjct: 229 TTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQ 288
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTE--YGIIPQIEHYGCMVDLLSRAGFLQE 135
+ T+ +L AC + G+ G++ Y + TE + + + L + G + E
Sbjct: 289 WDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDE 348
Query: 136 AYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182
A + MP+K + V W A+L G ID A+ ++ + + L
Sbjct: 349 ARQVFNQMPVK-DLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLT 394
>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Brachypodium distachyon]
Length = 599
Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 166/351 (47%), Positives = 232/351 (66%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + QSG + ++ ++DMY KCG +E A VF + + + +W+ MI GLA+HG+
Sbjct: 249 VHRWVEQSGITMDEKLATAVVDMYCKCGSVEEAWHVFKVLPTKGLTSWNCMIGGLAVHGR 308
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K+A+ F++M + P+ VT + +L AC H G V +G +F + YGI P++EHYG
Sbjct: 309 CKDAIELFHEMEREDVAPDDVTLVNVLTACAHTGMVSDGHNYFNYIVQRYGIEPKMEHYG 368
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL RAG L EA + I +MP++P+ V GAL G C++H+++DL E ++ +LDP
Sbjct: 369 CMVDLFGRAGLLDEAKKVIDDMPMEPDIGVLGALFGACKIHRDLDLGEAIGWRVIELDPQ 428
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +V+L+N+ A A +W DVA+VR+LM V K G S I +DG V EF G H Q
Sbjct: 429 NSGRYVLLANLLASAGQWVDVAKVRRLMDERNVSKEAGRSVIEIDGEVCEFQCGSLCHAQ 488
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++IF + ++ ++L+GY+P+TS VL DI E+EKE L HSEKLA+ FGL+ T PG
Sbjct: 489 EKEIFAAVKDMMRKIRLEGYMPDTSDVLHDITEEEKEVPLQYHSEKLAIAFGLLRTRPGD 548
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+RI KNLRVC DCH A K IS + REIVVRDRNRFH F+ G+CSC DYW
Sbjct: 549 TVRITKNLRVCRDCHEATKFISRVFEREIVVRDRNRFHHFKDGTCSCRDYW 599
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 2/161 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
T++ + G ++ AR++F M ER + +W+AMI G G+ +AL F++M +GI+
Sbjct: 165 TTMVGGLCRLGLVDDARKLFDGMPERNLISWNAMISGYVKAGRFLDALEVFDQMRALGIE 224
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
NG + AC G + GR + + GI + +VD+ + G ++EA+
Sbjct: 225 GNGFVAASAVVACTGAGVLARGRE-VHRWVEQSGITMDEKLATAVVDMYCKCGSVEEAWH 283
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
+ +P K W ++GG VH A E ++++ D
Sbjct: 284 VFKVLPTK-GLTSWNCMIGGLAVHGRCKDAIELFHEMERED 323
>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 592
Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 171/352 (48%), Positives = 235/352 (66%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VHEY ++ F N+ + L++MY +CG + AR VF MEE+ + W+AMI G +HG
Sbjct: 241 VHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGH 300
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+A+ FN+M G +PN VTF+ +L AC H G VDEGR+ F +M EYG++P +EH
Sbjct: 301 GSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQV 360
Query: 122 CMVDLLSRAGFLQEAYEFIRNM-PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVD+L RAG L EAY+FI+N P +P VW A+LG C++HKN DL E + L ++P
Sbjct: 361 CMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSIEP 420
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G++V+LSNIYA A R + V ++R +M +KK G+S+I VD V+ F GD++HP
Sbjct: 421 ENPGHYVMLSNIYALAGRMDRVEKIRNIMIRNRLKKEVGYSTIDVDHKVYLFSMGDKSHP 480
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ ++L+ + GYIP + V+ ++EE+E+E L HSEKLA+ FGL+ T G
Sbjct: 481 KTNQIYLYLDELMSRCREAGYIPASESVMHEVEEEEREYALRYHSEKLAIAFGLLKTGSG 540
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLR+CEDCH A K IS I NREI VRDR RFH F+ GSCSC DYW
Sbjct: 541 VAIRIVKNLRMCEDCHTAIKYISIIANREINVRDRLRFHHFKDGSCSCQDYW 592
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 94/192 (48%), Gaps = 22/192 (11%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G+ + V L+ Y K G + AR+VF +M E+TV W++MI G +G KEA+ F
Sbjct: 148 GYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELF 207
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMG------WVDEG-RRFFYSMTTEYGIIPQIEHYGC 122
M ++G+KP+ TF+ LL AC +G WV E R + + G
Sbjct: 208 FLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGT--------A 259
Query: 123 MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASRQLDQL 178
++++ SR G + +A E +M K N V W A++ G +H + I+L E S D
Sbjct: 260 LMNMYSRCGNVSKAREVFDSMEEK-NIVAWTAMISGYGMHGHGSQAIELFNEMS--FDGP 316
Query: 179 DPLNNGYHVVLS 190
P N + VLS
Sbjct: 317 RPNNVTFVAVLS 328
>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 658
Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 171/351 (48%), Positives = 234/351 (66%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + + V N LI MY +CG + +RVF M++R V +W+++I +HG
Sbjct: 308 IHGYILRRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGF 367
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K+A+ F MI G+ P+ ++FI +L AC H G V+EG+ F SM ++Y I P +EHY
Sbjct: 368 GKKAIQIFENMIHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYA 427
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RA L EA + I +M +P VWG+LLG CR+H N++LAE AS L +L+P
Sbjct: 428 CMVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTVLFELEPR 487
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V+L++IYAEA+ W + V KL+ G++K PG S I V V+ FV+ DE +PQ
Sbjct: 488 NAGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQ 547
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E+I + KL + MK +GY+P T+VVL D++E+EKE+ + HSEKLA+ FGL+NT G
Sbjct: 548 IEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKLAVAFGLINTAKGE 607
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI KNLR+CEDCHA K IS+ NREI+VRD NRFH F+ G CSCGDYW
Sbjct: 608 TIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFRDGVCSCGDYW 658
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 6/160 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH SGF ++ + LI+MY + G ++ A +VF E ERT++ W+A+ + LA+ G
Sbjct: 100 VHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGH 159
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACG----HMGWVDEGRRFFYSMTTEYGIIPQI 117
KE L + +M IG + T+ +L AC + + +G+ ++ +G I
Sbjct: 160 GKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKGKE-IHAHILRHGYEANI 218
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
++D+ ++ G + A MP K N V W A++
Sbjct: 219 HVMTTLLDVYAKFGSVSYANSVFCAMPTK-NFVSWSAMIA 257
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 8/160 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G+ NI V TL+D+Y K G + A VF M + +WSAMI A +
Sbjct: 205 IHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEM 264
Query: 62 AKEALTSFNKMI--EIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEY-GIIPQI 117
+AL F M+ PN VT + +L AC + +++G+ Y + + I+P +
Sbjct: 265 PMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDSILPVL 324
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
++ + R G + NM K + V W +L+
Sbjct: 325 ---NALITMYGRCGEVLMGQRVFDNMK-KRDVVSWNSLIS 360
>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
Length = 606
Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 234/352 (66%), Gaps = 2/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+Y + G ++V LIDMY KCG LE A VF ME + WS MI A HG
Sbjct: 256 VHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESKDRQAWSVMIVAYANHGY 315
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA++ F +M + G+KP+ +TF+G+L+AC H G V EG ++F M ++GI+P I+HYG
Sbjct: 316 GREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQYFDDMK-DHGIVPGIKHYG 374
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+ DLL+R+G L+ AY+FI +PI P ++W LL C H + +L + ++ +LD
Sbjct: 375 CVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDFELGKRVFERILKLDDS 434
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G +V+ SN+ A WE++ VRKLM GV K PG SSI +D VHEF AGD HP+
Sbjct: 435 HGGDYVIFSNLCANTGYWEEMNMVRKLMSEKGVVKVPGCSSIEIDNTVHEFFAGDGRHPK 494
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVL-LDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+++ +M ++++D +KL GY+PNTS V +++ E+EK L HSEKLA+ FGL+NT PG
Sbjct: 495 SQEARKMVDEVIDQLKLVGYVPNTSHVFHVEMGEEEKAISLKYHSEKLAIAFGLLNTAPG 554
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+R++KNLRVC DCH+ KL+S + NR I++RD NRFH F+ G CSCGDYW
Sbjct: 555 ATLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEEGICSCGDYW 606
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 1/146 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H + + G + V TLI+MY +CG AR +F + V +++AMI
Sbjct: 154 QAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMFGGTDGGCVVSYNAMIAAAVRSS 213
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EAL F +M G+KP VT I +L AC +G ++ G R+ + + G+ ++
Sbjct: 214 RPGEALVLFREMQGKGLKPTSVTVISVLSACALLGALELG-RWVHDYVRKIGLGSLVKVS 272
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIK 146
++D+ ++ G L++A + + M K
Sbjct: 273 TALIDMYAKCGSLEDAIDVFQGMESK 298
>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
Length = 1408
Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 156/351 (44%), Positives = 236/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H S ++GF ++ V LIDMY K L+ A +VF ++ +T+ +W+ MI G AI G
Sbjct: 1058 IHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGL 1117
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA++ FN+M ++G+ P+ +TF LL AC + G + EG ++F SM T+Y I+P++EHY
Sbjct: 1118 GKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYC 1177
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG+L EA++ I MP+KP+ +WGALLG CR+HKN+ AE A++ L +L+P
Sbjct: 1178 CMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEPN 1237
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+ ++++ N+Y+ RWED+ +R+LM GV+ WS I ++ VH F + ++ HP
Sbjct: 1238 NSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPD 1297
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A KI+ +L+ MK GY+P+ + V +++E EK+K L H+EKLA+T+GL+ G
Sbjct: 1298 AGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGE 1357
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR++KN R+C DCH+A K IS + RE+ +RD RFH F+ G CSC D+W
Sbjct: 1358 PIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 1408
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 26/181 (14%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H Y ++GF ++ V +LIDMYVK L A+ VF M+ R +F W++++ G + G
Sbjct: 933 THGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGM 992
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIG------------------------LLHACGHMGWV 97
++AL N+M + GIKP+ VT+ G LL AC + +
Sbjct: 993 FEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLL 1052
Query: 98 DEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
+G+ + ++ G I + ++D+ S++ L+ A++ R + K W ++
Sbjct: 1053 QKGKE-IHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNK-TLASWNCMIM 1110
Query: 158 G 158
G
Sbjct: 1111 G 1111
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 1/138 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y + G ++ +CN LI MY K G LE ARRVF ME R +W++MI A G
Sbjct: 796 QIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALG 855
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A + F ++ +KP+ VT+ LL G+ +E M E G P
Sbjct: 856 FLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGE-GFKPNSSSM 914
Query: 121 GCMVDLLSRAGFLQEAYE 138
++ +S GFL E
Sbjct: 915 TSVLQAISELGFLNMGKE 932
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 33/188 (17%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
+ GF ++ + L++ Y +C LE A +VF EM W+ I + ++ +
Sbjct: 702 KRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVE 761
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRR-----FFYSMTTEYGII-PQIEHYG 121
F KM +K T + +L ACG MG ++ ++ F + + ++ + P I Y
Sbjct: 762 LFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYS 821
Query: 122 ------------------------CMVDLLSRAGFLQEAYEF---IRNMPIKPNGVVWGA 154
M+ + GFL +A+ + + +KP+ V W
Sbjct: 822 KNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNC 881
Query: 155 LLGGCRVH 162
LL G +H
Sbjct: 882 LLSGHFLH 889
>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
Length = 832
Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 170/343 (49%), Positives = 233/343 (67%), Gaps = 4/343 (1%)
Query: 14 NIRVCNT-LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
N+ V T L+DMY KCG + AR VF M + + +W+AMI G + HG +KEAL + +M
Sbjct: 490 NLLVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEM 549
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ G+ PN VTF+ +L AC H G V+EG R F SM +Y I + EHY CMVDLL RAG
Sbjct: 550 PKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGR 609
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNI 192
L++A EF+ MPI+P WGALLG CRVHK++D+ A+++L +LDP N G +V++SNI
Sbjct: 610 LEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNI 669
Query: 193 YAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKL 252
YA A RW++V +R++M+ GVKK PG S I ++ + F AG +THP+ E+I+ L
Sbjct: 670 YAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHL 729
Query: 253 LDGMKLKGYIPNTSVVLL---DIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNL 309
K GYIP+TS +L DI+E+E+E++L +HSE+LAL+ GL++ P + IR+ KNL
Sbjct: 730 TLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNL 789
Query: 310 RVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
R+C DCH A K IS+I R I+ RD NRFH F+ G CSCGDYW
Sbjct: 790 RICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 832
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 132/288 (45%), Gaps = 43/288 (14%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++ +NI V L+ MY +CG L A+ +F M ER ++W++MI+G +G
Sbjct: 299 QIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNG 358
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRR---FFYSMTTEYGIIPQI 117
+ +EAL F +M GIKP+ + +L +C + +GR F T E I Q+
Sbjct: 359 ETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQV 418
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKP--NGVVWGALLGGCRVHKNIDLAEEASRQL 175
+VD+ ++ G + A++ + + IK N +W ++L G + N L +E+
Sbjct: 419 ----VLVDMYAKCGSMDYAWK-VYDQTIKKDRNTALWNSILAG---YANKGLKKESFNHF 470
Query: 176 DQLDPLNNGYHVV--------------LSNIYAEAERWEDVARVRKLMRNLGVKKTPGWS 221
++ + Y V+ L ++Y++ + + R + N+ K W+
Sbjct: 471 LEMLESDIEYDVLTMVTIVNLLVLETALVDMYSKCGA---ITKARTVFDNMNGKNIVSWN 527
Query: 222 SITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVL 269
++ ++G H +++ ++E+ M KG PN L
Sbjct: 528 AM---------ISGYSKHGCSKEALILYEE----MPKKGMYPNEVTFL 562
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 75/160 (46%), Gaps = 4/160 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH GF+ + V N LIDMY KC E +VF EM ER TW+++I A G
Sbjct: 196 QVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFG 255
Query: 61 QAKEALTSFNKMIEI--GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+AL F +M E GI+P+ TF LL C + ++GR+ ++ I I
Sbjct: 256 HFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQ-IHAHLIRANITKNII 314
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V + S G L A E M + N W +++ G
Sbjct: 315 VETELVHMYSECGRLNYAKEIFNRMAER-NAYSWNSMIEG 353
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEG---ARRVFIEMEERTVFTWSAMIQGLAI 58
+H +G+ + + ++ +Y + GCL+ AR++F EM ER + W+ MI A
Sbjct: 93 IHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYAR 152
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRR 102
EA F++M++IG+ P+ TF L CG + D G++
Sbjct: 153 VDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQ 196
>gi|302765332|ref|XP_002966087.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
gi|300166901|gb|EFJ33507.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
Length = 449
Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 219/352 (62%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + SGF ++ L+DMY KCG LE + +VF ME R +W+AMI LA HG
Sbjct: 98 QIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHG 157
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q EAL F +M G+ + TFI +L AC H G + E FF+SM +Y I P HY
Sbjct: 158 QGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHY 217
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+D + RAG LQ+A E I +MP P V W LL CR+H + A + + L +L P
Sbjct: 218 CRALDTIGRAGRLQDAEELIHSMPFHPETVTWKTLLNACRIHSQAERATKVAELLAKLAP 277
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ + +L N+YA ER+ D RVRK M + G+KK PG S I V VHEFVAGD HP
Sbjct: 278 EDSMAYTLLGNVYAATERYGDQMRVRKSMTDRGLKKVPGKSFIEVKNKVHEFVAGDRAHP 337
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++I EKL M+ GY+PNT VL + E+EKE+ + HSEKLA+ FGL+ TPPG
Sbjct: 338 SRDEILLELEKLGGRMREAGYVPNTKDVLHAVNEEEKEQLIGLHSEKLAIAFGLIATPPG 397
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TP+ I+KNLRVC DCHAA K+I++I+ R IVVRD +RFH F+ G CSC DYW
Sbjct: 398 TPLLIVKNLRVCSDCHAATKVIAKIMRRRIVVRDTHRFHHFEDGQCSCKDYW 449
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 80/158 (50%), Gaps = 2/158 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N L++MYV+CG LE AR+VF M+ F+W+ MI + + EAL F++M GI
Sbjct: 15 NALLNMYVRCGSLEEARKVFDAMDHPDAFSWTNMITACTENCELLEALELFHRMNLEGIP 74
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P VT +L+AC G + G++ +S G + ++D+ ++ G L+ + +
Sbjct: 75 PTSVTLASVLNACACSGALKVGKQ-IHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSK 133
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLD 176
M + N V W A++ H D A E ++++
Sbjct: 134 VFTAMETR-NSVSWTAMIAALAQHGQGDEALELFKEMN 170
>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
Length = 719
Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 227/352 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H+Y +G + L+DMY KCG +E A VF E E++++ TW+ MI G AIHG
Sbjct: 368 RIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHG 427
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+++A+ F +M+ GIKP+ V F+ LL AC H G VD G FF SM +Y I P ++HY
Sbjct: 428 HSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHY 487
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+VD+L R+G L+EA FI MP+ P+ V+WGAL CR HK +A+ A +L +L+P
Sbjct: 488 TLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLLKLEP 547
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ G ++ LSN YA +WED RVR LM+N GV K GWS I V+G VH FV+GD H
Sbjct: 548 THTGNYIFLSNAYAALGQWEDAERVRVLMQNRGVHKNSGWSCIEVEGQVHRFVSGDHDHK 607
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++ I E+++ G +GYIP T VL ++E++EKE L H EKLAL F L+ T PG
Sbjct: 608 DSKAICLKLEEIMAGAVKQGYIPGTEWVLHNMEQEEKEDVLGSHGEKLALAFALICTSPG 667
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNL+VC DCH+ K S+I REI++RD RFH F+ GSCSC D+W
Sbjct: 668 MTIRIVKNLQVCGDCHSLMKYASKISQREIMLRDMKRFHHFKDGSCSCRDHW 719
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 84/157 (53%), Gaps = 2/157 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
+TLID + K G ++ A +F +M E+ V +W+ M+ G + +G +++AL+ F+KM+E G++
Sbjct: 285 STLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVR 344
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
PN T + L AC +G ++ G R + + G+ +VD+ ++ G ++ A E
Sbjct: 345 PNAFTIVSALSACAKIGGLEAGLR-IHKYIKDNGLHLTEALGTALVDMYAKCGNIESASE 403
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
K + W ++ G +H + + A +Q+
Sbjct: 404 VFGETEQK-SIRTWTVMIWGWAIHGHSEQAIACFKQM 439
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 80/210 (38%), Gaps = 48/210 (22%)
Query: 20 TLIDMYVKCGCLEGARRVFIEMEER-----TVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
+L+DMYVK L A +VF E ER + W+ +I+G G K+A+ F M
Sbjct: 219 SLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAM-- 276
Query: 75 IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ 134
K V++ L+ G +D F M + + + MVD SR G +
Sbjct: 277 --PKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEK-----NVVSWTTMVDGFSRNGDSE 329
Query: 135 EAYEFIRNM---PIKPNGVV----------WGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+A M ++PN G L G R+HK I
Sbjct: 330 KALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIK--------------- 374
Query: 182 NNGYHVV------LSNIYAEAERWEDVARV 205
+NG H+ L ++YA+ E + V
Sbjct: 375 DNGLHLTEALGTALVDMYAKCGNIESASEV 404
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 102/237 (43%), Gaps = 24/237 (10%)
Query: 37 VFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGW 96
VF + + +FT++A+I+GL + A+ F M+ GIKP+ +T+ +L + +
Sbjct: 135 VFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFS 194
Query: 97 VDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIK----PNGVVW 152
+ G + M GI +VD+ + L A++ P + + ++W
Sbjct: 195 TELGMA-IHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLW 253
Query: 153 GALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212
L+ GC ++ A + + + + + +V S + + D+ R +L +
Sbjct: 254 NVLIKGCCKAGSMKKAVKLFKAMPKKE------NVSWSTLIDGFAKNGDMDRAMELFDQM 307
Query: 213 GVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVL 269
K W+++ VDG GD +EK M+ K+L+ +G PN ++
Sbjct: 308 PEKNVVSWTTM-VDGFSRN---GD-----SEKALSMFSKMLE----EGVRPNAFTIV 351
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 344 bits (883), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 167/336 (49%), Positives = 229/336 (68%), Gaps = 3/336 (0%)
Query: 20 TLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP 79
L+DMY KCG + AR VF M + + +W+AMI G + HG +KEAL + +M + G+ P
Sbjct: 753 ALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYP 812
Query: 80 NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEF 139
N VTF+ +L AC H G V+EG R F SM +Y I + EHY CMVDLL RAG L++A EF
Sbjct: 813 NEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEF 872
Query: 140 IRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERW 199
+ MPI+P WGALLG CRVHK++D+ A+++L +LDP N G +V++SNIYA A RW
Sbjct: 873 VEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRW 932
Query: 200 EDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLK 259
++V +R++M+ GVKK PG S I ++ + F AG +THP+ E+I+ L K
Sbjct: 933 KEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGL 992
Query: 260 GYIPNTSVVLL---DIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCH 316
GYIP+TS +L DI+E+E+E++L +HSE+LAL+ GL++ P + IR+ KNLR+C DCH
Sbjct: 993 GYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCH 1052
Query: 317 AAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
A K IS+I R I+ RD NRFH F+ G CSCGDYW
Sbjct: 1053 TATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 1088
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH GF+ + V N LIDMY KC E +VF EM ER TW+++I A G
Sbjct: 297 QVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFG 356
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+AL F +M E G K N +L A + + +GR + + I
Sbjct: 357 HFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNL-LNSDIILG 415
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ S+ G ++EA++ R++ ++ N V + ALL G
Sbjct: 416 SALVDMYSKCGMVEEAHQVFRSL-LERNEVSYNALLAG 452
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 93/187 (49%), Gaps = 11/187 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++ +NI V L+ MY +CG L A+ +F M ER ++W++MI+G +G
Sbjct: 500 QIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNG 559
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR---RFFYSMTTEYGIIPQI 117
+ +EAL F +M GIKP+ + +L +C + +GR F T E I Q+
Sbjct: 560 ETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQV 619
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
+VD+ ++ G + A++ + + IK + ++ ++ N A +A DQ
Sbjct: 620 ----VLVDMYAKCGSMDYAWK-VYDQTIKKDVILNNVMVSA---FVNSGRANDAKNLFDQ 671
Query: 178 LDPLNNG 184
++ N
Sbjct: 672 MEQRNTA 678
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 6/169 (3%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
+I + + L+DMY KCG +E A +VF + ER +++A++ G G+A+EAL ++
Sbjct: 408 LNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYH 467
Query: 71 KM-IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
M E GI+P+ TF LL C + ++GR+ ++ I I +V + S
Sbjct: 468 DMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQ-IHAHLIRANITKNIIVETELVHMYSE 526
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
G L A E M + N W +++ G ++ +EA R Q+
Sbjct: 527 CGRLNYAKEIFNRMA-ERNAYSWNSMIEG---YQQNGETQEALRLFKQM 571
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 79/152 (51%), Gaps = 3/152 (1%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
++++ + N ++ +V G A+ +F +ME+R W++++ G A G KE+ F +
Sbjct: 643 KKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLE 702
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP-QIEHYGCMVDLLSRA 130
M+E I+ + +T + +++ C + ++ G + +S+ + G + + +VD+ S+
Sbjct: 703 MLESDIEYDVLTMVTIVNLCSSLPALEHGDQ-LHSLIIKKGFVNCSVVLETALVDMYSKC 761
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
G + +A NM K N V W A++ G H
Sbjct: 762 GAITKARTVFDNMNGK-NIVSWNAMISGYSKH 792
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
++G N+ V L+D Y + G ++ A E+E +V TW+A+I G +EA
Sbjct: 203 KAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWG 262
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRR 102
F++M++IG+ P+ TF L CG + D G++
Sbjct: 263 IFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQ 297
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 5/160 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEG---ARRVFIEMEERTVFTWSAMIQGLAI 58
+H +G+ + + ++ +Y + GCL+ AR++F EM ER + W+ MI A
Sbjct: 93 IHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYAR 152
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
E L + +M G + TF ++ AC M + G R S + G+ +
Sbjct: 153 VDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMG-GVRQLQSSVVKAGLNCNLF 211
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
G +VD +R G++ +A + + + V W A++ G
Sbjct: 212 VGGALVDGYARFGWMDDAVTSLDEIE-GTSVVTWNAVIAG 250
>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
Length = 1133
Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 156/351 (44%), Positives = 236/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H S ++GF ++ V LIDMY K L+ A +VF ++ +T+ +W+ MI G AI G
Sbjct: 783 IHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGL 842
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA++ FN+M ++G+ P+ +TF LL AC + G + EG ++F SM T+Y I+P++EHY
Sbjct: 843 GKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYC 902
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG+L EA++ I MP+KP+ +WGALLG CR+HKN+ AE A++ L +L+P
Sbjct: 903 CMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPN 962
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+ ++++ N+Y+ RWED+ +R+LM GV+ WS I ++ VH F + ++ HP
Sbjct: 963 NSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPD 1022
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A KI+ +L+ MK GY+P+ + V +++E EK+K L H+EKLA+T+GL+ G
Sbjct: 1023 AGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGE 1082
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR++KN R+C DCH+A K IS + RE+ +RD RFH F+ G CSC D+W
Sbjct: 1083 PIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 1133
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 75/145 (51%), Gaps = 5/145 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H Y ++GF ++ V +LIDMYVK L A+ VF M+ R +F W++++ G + G
Sbjct: 647 THGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGM 706
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL N+M + GIKP+ VT+ G++ G E FF M E G++P
Sbjct: 707 FEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQE-GVMPNSASIT 765
Query: 122 CMVDLLSRAGFLQEAYEF----IRN 142
C++ + LQ+ E IRN
Sbjct: 766 CLLRACASLSLLQKGKEIHCLSIRN 790
>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like, partial [Cucumis sativus]
Length = 658
Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 165/348 (47%), Positives = 233/348 (66%), Gaps = 1/348 (0%)
Query: 5 YSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKE 64
Y ++S +R + V LIDMY KCG + AR VF + ++ V WS MI G +HG +E
Sbjct: 312 YISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQE 371
Query: 65 ALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMV 124
A+ +N+M + G+ PN TFIGLL AC + G V EG F+ M ++GI P +HY C+V
Sbjct: 372 AICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMP-DHGIEPHHQHYSCVV 430
Query: 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNG 184
DLL RAG+L +AY+FI +MPIKP VWGALL C++H+ + L E A+ QL LDP N G
Sbjct: 431 DLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTG 490
Query: 185 YHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEK 244
++V LSN+YA A W VA VR +M G+ K G SSI ++G + F GD +HP++++
Sbjct: 491 HYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKE 550
Query: 245 IFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIR 304
IF+ ++L +K GY+P+ VL D+ +E E+ L HSE+LA+ +G+++T PGT +R
Sbjct: 551 IFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTLR 610
Query: 305 IMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I KNLR C +CH+A KLIS++V+REI++RD RFH F+ G CSCGD+W
Sbjct: 611 ITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 658
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 96/178 (53%), Gaps = 5/178 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + GF N+ V N+L+ MY K G + AR VF ++ +RTV +W+++I G +G
Sbjct: 106 QIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNG 165
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL F +M + +KP+ + + ++ A ++ + +G+ + + T+ G+ + +
Sbjct: 166 DPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKS-IHGLVTKLGLEFEPDIV 224
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ + ++ G ++ A F M KPN ++W A++ G + N EEA + ++
Sbjct: 225 ISLTTMYAKRGLVEVARFFFNRME-KPNLILWNAMISG---YANNGYGEEAIKLFREM 278
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G + +L MY K G +E AR F ME+ + W+AMI G A +G
Sbjct: 208 IHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGY 267
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR 101
+EA+ F +MI I+ + +T + A +G ++ R
Sbjct: 268 GEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELAR 307
>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
Length = 637
Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 160/351 (45%), Positives = 227/351 (64%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VHE + G ++ + LIDMY KCG + A+ VF M R VF W++MI GLA HG
Sbjct: 287 VHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGL 346
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+A+ F K + G P +TF+G+L+AC G VDEGRR+F M +Y I ++EHYG
Sbjct: 347 GHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHYG 406
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLLSRAG +QEA E I M I P+ V+WG +L C+ H +DL +L +LDP
Sbjct: 407 CMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIELDPA 466
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++GY+V+L++IYA+A++W++V +VRKLM N G K+ GWS + G+VH+F+ GD H
Sbjct: 467 HDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDMNHKD 526
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ +I+ M + + GY+P+ S VL DI ++EK + HSE+LA+ +G + G+
Sbjct: 527 SARIYNMLCTINRRLAEAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVVEAGS 586
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNL VC DCH K+++++ REIVVRD +RFH + G CSC DYW
Sbjct: 587 PIRIVKNLSVCGDCHEFSKMVTKVFGREIVVRDGSRFHHMKDGKCSCHDYW 637
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 2/150 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ N ++ YV+ G + AR VF M R +WS +I G G+ + AL F M
Sbjct: 197 RDVVTWNAVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNM 256
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ G+K N + L A +G +++G +F + + G+ + ++D+ S+ G
Sbjct: 257 VAQGVKANEAAIVTALSAAAQLGLLEQG-KFVHEVVKRVGMTMSVNLGAALIDMYSKCGS 315
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ A E MP + + W +++ G H
Sbjct: 316 VAAAKEVFDAMP-RRDVFAWNSMICGLATH 344
>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 168/351 (47%), Positives = 229/351 (65%), Gaps = 1/351 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH +S F +I V + LI MY+KCG L A+RVF + + W+++I G A HG
Sbjct: 218 QVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHG 277
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++AL F+ M I P+ +TFIG+L AC + G V EG F SM ++Y + P+ EHY
Sbjct: 278 FGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHY 337
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG L EA I NMP++ + +VWGALLG CR HKN+DLAE A+++L QL+P
Sbjct: 338 ACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEP 397
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET-H 239
N G +++LSN+Y+ RW+DV +RK MR ++K+PG S I VD VH F G T H
Sbjct: 398 NNAGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSWIEVDKKVHIFSGGGSTSH 457
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ E I + KL ++ GY P+ S V+ D++E+EK L HSEKLA+ +GL+ P
Sbjct: 458 PEHEMILKKLGKLGALLREAGYCPDGSFVMHDVDEEEKVHSLRDHSEKLAVAYGLLKVPE 517
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGD 350
G PIR+MKNLRVC D H+ KLI+++ REI++RD NRFH F+ G CSC D
Sbjct: 518 GMPIRVMKNLRVCGDSHSTIKLIAQVTGREIILRDTNRFHHFKDGLCSCSD 568
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 68/140 (48%), Gaps = 10/140 (7%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N L+ YV+ G + AR+VF +M ER V +W+AMI+G G +EA F +M E +
Sbjct: 29 NGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRMPERNVV 88
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
V GL+ G VDE R+ F M + + M+D L G L EA E
Sbjct: 89 SWTVMLGGLIED----GRVDEARQLFDMMP-----VKDVVASTNMIDGLCSEGRLIEARE 139
Query: 139 FIRNMPIKPNGVVWGALLGG 158
MP + N V W +++ G
Sbjct: 140 IFDEMPQR-NVVAWTSMISG 158
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 92/233 (39%), Gaps = 21/233 (9%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ +I YV+ G +E A +F M ER V +W+ M+ GL G+ EA F+ M
Sbjct: 54 RNVVSWTAMIRGYVQEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMM 113
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM--------TTEYGIIPQIEHYGCMV 124
+ + GL C G + E R F M T+ + M+
Sbjct: 114 PVKDVVASTNMIDGL---CSE-GRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMI 169
Query: 125 DLLSRAGFLQEA---YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL--DQLD 179
+ R GF EA + ++ ++P+ ++L C ++D + QL Q D
Sbjct: 170 KIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFD 229
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEF 232
++ VL +Y + D+ +++ K W+SI H F
Sbjct: 230 -IDIYVSSVLITMYIKC---GDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGF 278
>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 648
Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 166/351 (47%), Positives = 232/351 (66%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H S + F + +V L+DMY KCG + AR +F + + V +W+AMI G A+HG
Sbjct: 299 LHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGH 358
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A EAL F +M + KP+ +TF+G+L AC H G ++EG FF +M +Y I P ++HY
Sbjct: 359 ATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYT 417
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL +G L EAY I M + P+ VWGALL C++H N++L E A +L +L+P
Sbjct: 418 CMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPD 477
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G +V+LSNIYA+A +WE VA++RKLM + +KK+ S I V VH F++GD +HP
Sbjct: 478 DAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPL 537
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I+ E++ MK GY P+T V D+E+ EK + HSE+LA+ FGL++TPPGT
Sbjct: 538 SDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGT 597
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ I KNLR+CEDCH A K IS+I REI VRD NR+H F+ G CSCGDYW
Sbjct: 598 RLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 648
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 90/177 (50%), Gaps = 8/177 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+HE+ Q+G+ +++ V LIDMY KCGC+ AR VF ++ R W++M+ + +G
Sbjct: 198 IHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGH 257
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHY 120
L+ ++M+ G++P T + + A + +GR S E+ +++
Sbjct: 258 PDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVK-- 315
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASR 173
+VD+ ++ G ++ A + +K V W A++ G +H + +DL EE +R
Sbjct: 316 TALVDMYAKCGSVRVARNLFERLGVK-RVVSWNAMITGYAMHGHATEALDLFEEMNR 371
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 78/158 (49%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +GF + + L+++Y C L AR +F + + +F W+ +I+G A +G
Sbjct: 96 QLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNG 155
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ A+ + +M + G+ P+ TF +L AC + ++ GR + + G +
Sbjct: 156 PYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGRE-IHEHVVQTGWEKDVFVG 214
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ ++ G + A E + ++ + V+W ++L
Sbjct: 215 AALIDMYAKCGCVGSAREVFDKILVR-DAVLWNSMLAA 251
>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Brachypodium distachyon]
Length = 1206
Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 168/352 (47%), Positives = 231/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH +S F + V N+LID Y KCGC+ AR +F ++E + +W+A+I G A+HG
Sbjct: 855 QVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHG 914
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
QA A F+ M + IK N +TF+ LL CG G V +G F SM ++GI P +EHY
Sbjct: 915 QAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHY 974
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+V LL RAG L +A FI ++P P+ +VW ALL C VHKN++L ++ ++ +++P
Sbjct: 975 TCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGRFSAEKVLEIEP 1034
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +V+LSN+Y+ A + VA RK MRN+GV+K PG S + + G VH F G E HP
Sbjct: 1035 QDETTYVLLSNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWVEIKGEVHAFSVGSEDHP 1094
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
I M E L +GY+P+T VL D+EE++K + L+ HSE+LAL +GL+ TPPG
Sbjct: 1095 CMRVINAMLEWLNLKAIREGYVPDTDEVLHDLEEEQKVRMLWVHSERLALAYGLVMTPPG 1154
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRIMKNLR C DCHA FK+IS+IV +EI+VRD NRFH F+ G+CSCGDYW
Sbjct: 1155 HPIRIMKNLRSCLDCHAIFKVISKIVKQEIIVRDINRFHHFEEGTCSCGDYW 1206
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H S ++ + V L+DMY KCG +E AR F + V WS MI A Q
Sbjct: 654 IHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQ 713
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++A F +M+ + PN + +L AC +M +D G++ ++ + G ++
Sbjct: 714 NEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQ-IHNHAIKIGHESELFVGN 772
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++DL ++ ++ + E ++ N V W ++ G
Sbjct: 773 ALIDLYAKCSDMESSLEIFSSLR-DVNEVSWNTIIVG 808
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 20/179 (11%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ + G + V N LID+Y KC +E + +F + + +W+ +I G + G
Sbjct: 754 QIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSG 813
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACG------HMGWVD---EGRRFFYSMTTEY 111
+ AL+ F +M + VT+ +L AC H+G V E F
Sbjct: 814 FGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSN 873
Query: 112 GIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
+I GC+ D +E +E ++ + V W A++ G VH +A+E
Sbjct: 874 SLIDSYAKCGCIRD-------AREIFETLKECDL----VSWNAIISGYAVHGQAAMAQE 921
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 6/145 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + G RN V + LID Y CG + ARRVF + + W+AM+ + +
Sbjct: 553 VHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDC 612
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFY-SMTTEYGIIPQIEHY 120
+ L F+KM K N +L A + V G+ S+ T Y + Y
Sbjct: 613 PENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHV--Y 670
Query: 121 GCMVDLLSRAGFLQE---AYEFIRN 142
G ++D+ ++ G +++ A+E + N
Sbjct: 671 GALLDMYAKCGNIEDARLAFEMVTN 695
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 2 VHEYSNQSG--FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
VH + +SG R ++ N L++MY K G A RVF + ER + ++ ++QG A+
Sbjct: 450 VHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGHALR 509
Query: 60 GQAKEALTSFNKM 72
G+ +EA F ++
Sbjct: 510 GEFEEASALFQRL 522
>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
Length = 694
Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 171/352 (48%), Positives = 231/352 (65%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + +S NI V + L+DMY KCGC+E A ++F E +R + TW+AMI G A G
Sbjct: 343 LHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGD 402
Query: 62 AKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A+ AL F+ MI G PN +T + ++ +C G +G F +M +GI P+ EHY
Sbjct: 403 AQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHY 462
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL RAG ++AYE I+ MP++P+ VWGALLG C++H +L A+ +L +LDP
Sbjct: 463 ACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDP 522
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++G HV+LSN++A A RW + +RK M+N+G+KK PG S +T VVH F A D H
Sbjct: 523 QDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGCSWVTWKNVVHVFRAKDTKHE 582
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+I + KL M+ GY+P+T L D+EE+EKE +++HSEKLAL FGL+ PPG
Sbjct: 583 MYNEIQALLSKLRKQMQAAGYMPDTQYSLYDLEEEEKESEVFQHSEKLALAFGLICIPPG 642
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRIMKNLR+C DCH AFK IS IV REI+VRD NRFH F+ CSCGDYW
Sbjct: 643 VPIRIMKNLRICVDCHRAFKFISGIVGREIIVRDNNRFHHFKQYQCSCGDYW 694
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 5/178 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H + + GF ++ V N+++D Y KC C AR VF M R +W +M+ A +G
Sbjct: 241 QFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNG 300
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA ++ G +P L C + + GR +++ I I
Sbjct: 301 AEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRA-LHAVAVRSCIDANIFVA 359
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+VD+ + G +++A + P + N V W A++GG + +I A+ A D +
Sbjct: 360 SALVDMYGKCGCVEDAEQIFYETPQR-NLVTWNAMIGG---YAHIGDAQNALLVFDDM 413
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 2/141 (1%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
+C L+++Y K A TV +++A I G A HG+ AL++F M+ +G
Sbjct: 53 ICAHLVNLYSKLDLPAAAAAALASDPHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRLG 112
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC-MVDLLSRAGFLQE 135
++PN TF A +S+ +G +P C +D+ + G L+
Sbjct: 113 LRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKL 172
Query: 136 AYEFIRNMPIKPNGVVWGALL 156
A MP + N V W A++
Sbjct: 173 ARHLFGEMPNR-NVVAWNAVM 192
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Query: 22 IDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNG 81
+DMY K G L+ AR +F EM R V W+A++ + G+ E + ++ + E G PN
Sbjct: 161 LDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNV 220
Query: 82 VTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIR 141
V+ +AC ++ G + F+ + G + MVD + +A
Sbjct: 221 VSACAFFNACAGAMYLSLGEQ-FHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFD 279
Query: 142 NMPIKPNGVVWGALLGG 158
M ++ N V W +++
Sbjct: 280 GMGVR-NSVSWCSMVAA 295
>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
Length = 697
Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 162/352 (46%), Positives = 230/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH + ++ F NI V + +IDMY CG LE A+R F M E+ V W+AMI G ++G
Sbjct: 346 RVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNG 405
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+ F +M G+ P+ TF+ +L+AC H G V EG + FY M IP ++HY
Sbjct: 406 YGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHY 465
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C++D+L RAG L AY FI NMP +P+ V+ LLG CR+H NI L E S+++ +++P
Sbjct: 466 ACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEP 525
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ GY+V+LSN+YA A WE V R +R+ +KK PG+SSI ++ ++ F+AG++ HP
Sbjct: 526 NDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRLKKDPGFSSIEINQEIYTFMAGEKDHP 585
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q KI + + L+ +K GY+PNT+V+L D+ + K+ LY HSEK+A+ FGLM T PG
Sbjct: 586 QYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPG 645
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IRI KNLR C DCH+A K +S++ R +V++D NRFH FQ G CSC DYW
Sbjct: 646 TIIRITKNLRTCNDCHSASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + ++G+ + + L+D+YV C++ A RVF EM + V W+ M+ G +
Sbjct: 245 IHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRH 304
Query: 62 AKEALTSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A+ FNKM+ I +K + + +G+L +C H G + +GRR +++ + I
Sbjct: 305 WDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRR-VHALAIKTCFANNIFVG 363
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ + G L++A F M K + V W A++ G
Sbjct: 364 SAVIDMYANCGNLEDAKRFFYGMGEK-DVVCWNAMIAG 400
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 57/99 (57%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + GF N+ V L+DMY K GC+ AR++F M ER V +W+A++ G + HG
Sbjct: 144 VHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGF 203
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG 100
++EA+ FN M G+ + T + L+ A +G + G
Sbjct: 204 SEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVG 242
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 5/171 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H SG N + N+L++ YV CG L A+++F + V +W+ +I GLA +
Sbjct: 42 QIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKND 101
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA+ F +M KPN VT +L A ++G + + + G +
Sbjct: 102 CFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKS-VHCFWVRGGFEGNVFVE 160
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
+VD+ S+ G + A + +M + N V W A++ G H +EEA
Sbjct: 161 TALVDMYSKFGCMGVARQLFESMS-ERNVVSWNAIVSGYSDH---GFSEEA 207
>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
Length = 802
Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 229/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + Q GF + N LI MY +CG ++ A +F+ M +W+AMI L HG
Sbjct: 451 QLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHG 510
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F++M+ GI P+ ++F+ +L AC H G VDEG ++F SM ++GIIP +HY
Sbjct: 511 HGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHY 570
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
++DLL RAG + EA + I+ MP +P +W A+L GCR +++L A+ QL ++ P
Sbjct: 571 TRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTP 630
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++G +++LSN Y+ A RW D ARVRKLMR+ GVKK PG S I VH FV GD HP
Sbjct: 631 QHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGDTKHP 690
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+A K+++ E + M+ GY+P+T VVL D+E +KE L+ HSE+LA+ FGL+ PPG
Sbjct: 691 EAHKVYKFLEMVGARMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLKLPPG 750
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ ++KNLR+C+DCHA +S+ V REIVVRD RFH F+ G CSCG+YW
Sbjct: 751 ATVTVLKNLRICDDCHAVMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 2/144 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NT++ YV+ CL+ A VF EM + +W M+ G G +++AL FN+M +K
Sbjct: 368 NTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVK 427
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P T+ G + ACG +G + G++ + + G ++ + +R G ++EA
Sbjct: 428 PCDYTYAGAISACGELGSLKHGKQ-LHGHLVQLGFEGSNSAGNALITMYARCGAVKEANL 486
Query: 139 FIRNMPIKPNGVVWGALLGGCRVH 162
MP + V W A++ H
Sbjct: 487 MFLVMP-NIDSVSWNAMISALGQH 509
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 88/200 (44%), Gaps = 7/200 (3%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
T++ YV+ G + AR VF E++ + W+AMI G G EA F +M+ +
Sbjct: 232 TTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVP 291
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMT-TEYGIIPQ--IEHYGCMVDLLSRAGFLQE 135
+ TF +L AC + G+ G+ +T + +P+ + +V L S+ G +
Sbjct: 292 LDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAV 351
Query: 136 AYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAE 195
A NM K + V W +L G +D A E ++ + L+ +V+ + Y
Sbjct: 352 ARRIFDNMKSK-DVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELS---WMVMVSGYVH 407
Query: 196 AERWEDVARVRKLMRNLGVK 215
ED ++ MR VK
Sbjct: 408 GGFSEDALKLFNRMRAEDVK 427
>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Vitis vinifera]
Length = 852
Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 168/353 (47%), Positives = 235/353 (66%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIR-VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
++H Y ++ F + V N LIDMY K G ++ AR VF M +R +W++++ G +H
Sbjct: 500 QIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMH 559
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G+ +EAL F +M ++G+ P+GVTF+ +L+AC H G VD+G +F M ++G++P EH
Sbjct: 560 GRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEH 619
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CMVDLLSRAG L EA E IR MP+KP VW ALL CRV+ N++L E A+ QL +L+
Sbjct: 620 YACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELE 679
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
N+G + +LSNIYA A W+DVAR+R LM+N G+KK PG S + F AGD +H
Sbjct: 680 SGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSH 739
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P +++I+ + L+ +K GY+P+ L D++++EK L HSEKLAL +G++ T P
Sbjct: 740 PMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAP 799
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIRI KNLR C DCH+AF IS I+ EI+VRD +RFH F+ GSCSC YW
Sbjct: 800 GAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 852
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 6/161 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTV---FTWSAMIQGLAI 58
VH SGF N+ V N L+ MY +CG E AR+VF EM ER V +W++++
Sbjct: 148 VHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQ 207
Query: 59 HGQAKEALTSFNKMIE-IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
G + A+ F +M E +GI+P+ V+ + +L AC +G G++ + G+ +
Sbjct: 208 GGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQ-VHGYALRSGLFEDV 266
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ ++ G ++EA + M +K + V W A++ G
Sbjct: 267 FVGNAVVDMYAKCGMMEEANKVFERMKVK-DVVSWNAMVTG 306
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 93/180 (51%), Gaps = 5/180 (2%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
++ V N LIDMY KC + AR +F I ++R+V TW+ +I G A HG+A EAL F++
Sbjct: 408 DLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQ 467
Query: 72 MIEIG--IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
M++ + PN T L AC +G + GR+ + + C++D+ S+
Sbjct: 468 MLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSK 527
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
+G + A NM + NGV W +L+ G +H + A + ++ ++ + +G V+
Sbjct: 528 SGDVDAARVVFDNMHQR-NGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVV 586
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 91/222 (40%), Gaps = 44/222 (19%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME------------------ 42
+VH Y+ +SG ++ V N ++DMY KCG +E A +VF M+
Sbjct: 252 QVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIG 311
Query: 43 -----------------ERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFI 85
E V TWSA+I G A G EAL F +M G +PN VT +
Sbjct: 312 RFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLV 371
Query: 86 GLLHACGHMGWVDEGR-------RFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
LL C G + G+ ++ ++ E + ++D+ S+ + A
Sbjct: 372 SLLSGCALAGTLLHGKETHCHAIKWILNL-DENDPGDDLMVINALIDMYSKCKSPKAARA 430
Query: 139 FIRNMPIKPNGVV-WGALLGGCRVHKNIDLAEEASRQLDQLD 179
+P K VV W L+GG H + A E Q+ Q D
Sbjct: 431 MFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPD 472
>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 344 bits (882), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 170/352 (48%), Positives = 233/352 (66%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +S F ++ V + L+ MY+KCG L A++VF + V W+++I G A HG
Sbjct: 434 IHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGL 493
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL F+ M GI P+ VTF+G+L AC + G V +G F SM T+Y + +IEHY
Sbjct: 494 GVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYA 553
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L EA + I MP++ + ++WGALLG CR H +DLAE A+++L L+P
Sbjct: 554 CMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPK 613
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET-HP 240
N G ++LSNIYA RW+DVA +R+ MR+ V K PG S I V+ VH+F GD + HP
Sbjct: 614 NAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHP 673
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I ++ E L ++ GY P+ S VL D++E+EK + L HSEKLA+ +GL+ P G
Sbjct: 674 EHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIG 733
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+MKNLRVC DCHAA KLI+++ REI++RD NRFH F+ GSCSC DYW
Sbjct: 734 MPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 13/160 (8%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N+LI Y + G +E AR VF EM ++ + +W++++ G + + +EA F+KM E
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE---- 157
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
N +++ GL+ + G ++E R F M + + MV + G + EA
Sbjct: 158 RNTISWNGLVSGYINNGMINEAREVFDRMPER-----NVVSWTAMVRGYVKEGMISEAET 212
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
MP K N V W +LGG ID EA R D +
Sbjct: 213 LFWQMPEK-NVVSWTVMLGGLLQEGRID---EACRLFDMM 248
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 104/241 (43%), Gaps = 25/241 (10%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN N L+ Y+ G + AR VF M ER V +W+AM++G G EA T F +M
Sbjct: 158 RNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQM 217
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E + V GLL G +DE R F M E ++ + M+ + G
Sbjct: 218 PEKNVVSWTVMLGGLLQE----GRIDEACRLF-DMMPEKDVVTRTN----MIGGYCQVGR 268
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYH-VVLSN 191
L EA MP + N V W ++ G ++ +D+A R+L ++ P N +
Sbjct: 269 LVEARMLFDEMP-RRNVVSWTTMITGYVQNQQVDIA----RKLFEVMPEKNEVSWTAMLK 323
Query: 192 IYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIF-QMWE 250
Y R ++ + + M P S + + ++ F E P+A ++F QM E
Sbjct: 324 GYTNCGRLDEASELFNAM--------PIKSVVACNAMILCFGQNGEV-PKARQVFDQMRE 374
Query: 251 K 251
K
Sbjct: 375 K 375
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 4/151 (2%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+++ CN +I + + G + AR+VF +M E+ TWSAMI+ G +AL F M
Sbjct: 344 KSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMM 403
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMT-TEYGIIPQIEHYGCMVDLLSRAG 131
GI+PN + I +L C + +D GR + +++ + + ++ + + G
Sbjct: 404 QREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDL--DVYVASVLLSMYIKCG 461
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
L +A + +K + V+W +++ G H
Sbjct: 462 NLAKAKQVFDRFAVK-DVVMWNSIITGYAQH 491
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 97/224 (43%), Gaps = 18/224 (8%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
RRN+ T+I YV+ ++ AR++F M E+ +W+AM++G G+ EA FN
Sbjct: 281 RRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNA 340
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M + V ++ G G V + R+ F M + + M+ + R G
Sbjct: 341 MPIKSV----VACNAMILCFGQNGEVPKARQVFDQMREK-----DEGTWSAMIKVYERKG 391
Query: 132 FLQEAYEFIRNMP---IKPNGVVWGALLGGCRVHKNIDLAEEASRQL--DQLDPLNNGYH 186
+A E R M I+PN ++L C N+D E QL Q D L+
Sbjct: 392 LELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFD-LDVYVA 450
Query: 187 VVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVH 230
VL ++Y + ++A+ +++ VK W+SI H
Sbjct: 451 SVLLSMYIKC---GNLAKAKQVFDRFAVKDVVMWNSIITGYAQH 491
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 93/212 (43%), Gaps = 18/212 (8%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+NI N+++ Y + + A+ +F +M ER +W+ ++ G +G EA F++M
Sbjct: 127 KNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRM 186
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E N V++ ++ G + E F+ M + + + M+ L + G
Sbjct: 187 PE----RNVVSWTAMVRGYVKEGMISEAETLFWQMPEK-----NVVSWTVMLGGLLQEGR 237
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGG-CRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSN 191
+ EA MP K + V ++GG C+V + + EA D++ N +
Sbjct: 238 IDEACRLFDMMPEK-DVVTRTNMIGGYCQVGRLV----EARMLFDEMPRRNVVSWTTMIT 292
Query: 192 IYAEAERWEDVARVRKLMRNLGVKKTPGWSSI 223
Y + ++ D+A RKL + K W+++
Sbjct: 293 GYVQNQQ-VDIA--RKLFEVMPEKNEVSWTAM 321
>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 2261; Flags: Precursor
gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 850
Score = 344 bits (882), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 169/356 (47%), Positives = 231/356 (64%), Gaps = 4/356 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G N VCN LI MY KCG ++ A RVF ME R V +W++MI G A HG
Sbjct: 495 QIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHG 554
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A L +FN+MIE G+KPN VT++ +L AC H+G V EG R F SM ++ I P++EHY
Sbjct: 555 FAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHY 614
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG L +A+EFI MP + + +VW LG CRVH N +L + A+R++ +LDP
Sbjct: 615 ACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDP 674
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ LSNIYA A +WE+ +R+ M+ + K G S I V +H+F GD HP
Sbjct: 675 NEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHP 734
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDI----EEKEKEKFLYRHSEKLALTFGLMN 296
A +I+ ++L+ +K GY+P+T +VL + +E EKE+ LY+HSEK+A+ FGL++
Sbjct: 735 NAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLIS 794
Query: 297 TPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T P+R+ KNLRVC DCH A K IS + REIV+RD NRFH F+ G CSC DYW
Sbjct: 795 TSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 84/166 (50%), Gaps = 10/166 (6%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKC---GCLEGARRVFIEMEERTVFTWSAMIQGLA 57
++H ++ +SG ++ +L+DMY KC G ++ R+VF ME+ +V +W+A+I G
Sbjct: 290 QLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYM 347
Query: 58 IH-GQAKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP 115
+ A EA+ F++MI G ++PN TF ACG++ G++ + G+
Sbjct: 348 KNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVL-GQAFKRGLAS 406
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG-CR 160
++ + ++ +++A ++ K N V + L G CR
Sbjct: 407 NSSVANSVISMFVKSDRMEDAQRAFESLSEK-NLVSYNTFLDGTCR 451
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 93/204 (45%), Gaps = 27/204 (13%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEME---ERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEI 75
N+LI +Y K G A VF M +R V +WSAM+ +G+ +A+ F + +E+
Sbjct: 101 NSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLEL 160
Query: 76 GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY------GC-MVDLLS 128
G+ PN + ++ AC + +V GR G + + H+ GC ++D+
Sbjct: 161 GLVPNDYCYTAVIRACSNSDFVGVGR-------VTLGFLMKTGHFESDVCVGCSLIDMFV 213
Query: 129 RA-GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYH- 186
+ + AY+ M + N V W ++ C + EA R LD + +G+
Sbjct: 214 KGENSFENAYKVFDKMS-ELNVVTWTLMITRC---MQMGFPREAIRFF--LDMVLSGFES 267
Query: 187 --VVLSNIYAEAERWEDVARVRKL 208
LS++++ E+++ ++L
Sbjct: 268 DKFTLSSVFSACAELENLSLGKQL 291
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 73/158 (46%), Gaps = 8/158 (5%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
+ G N V N++I M+VK +E A+R F + E+ + +++ + G + ++A
Sbjct: 401 KRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFK 460
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
+++ E + + TF LL ++G + +G + +S + G+ ++ +
Sbjct: 461 LLSEITERELGVSAFTFASLLSGVANVGSIRKGEQ-IHSQVVKLGLSCNQPVCNALISMY 519
Query: 128 SRAGFLQEA---YEFIRNMPIKPNGVVWGALLGGCRVH 162
S+ G + A + F+ N N + W +++ G H
Sbjct: 520 SKCGSIDTASRVFNFMEN----RNVISWTSMITGFAKH 553
>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
[Vitis vinifera]
Length = 707
Score = 344 bits (882), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 163/354 (46%), Positives = 232/354 (65%), Gaps = 3/354 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAI 58
++H + S + + N ++DMY+KCG L+ A +F E+ ER V +W+ +I G +
Sbjct: 355 KLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGV 414
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
HG KEAL F++M G++PN +TF +L AC H G +DEGR+ F MT + + P+++
Sbjct: 415 HGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMT-KLSVRPEMK 473
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
HY CMVD+L RAGFL EA+ I+ +P +P+ VWGALL CR+H N +L E A+ L QL
Sbjct: 474 HYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQL 533
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
+P + GY+V++SNIYA + +W++V VR+ M++ G+KK +S I VH F D++
Sbjct: 534 EPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQS 593
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
P ++++ E L MK+ GY+P+ S VL D+E ++KE L HSEKLA+ FG+M
Sbjct: 594 SPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMD 653
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PI++ KNLRVC DCH AFK IS I R+I+VRD NRFH FQ G CSCGDYW
Sbjct: 654 QGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 707
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 103/193 (53%), Gaps = 6/193 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y+ +GF ++ V N+++ MY KCG +E AR VF MEER +W++M+ G +G+
Sbjct: 255 VHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGR 314
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHY 120
+AL+ FN+M PN VT + ++ AC ++G GR+ + ++++ I + +
Sbjct: 315 PTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRN- 373
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGV-VWGALLGGCRVHKNIDLAEE--ASRQLDQ 177
++D+ + G L A E N + V W L+ G VH + A E + Q++
Sbjct: 374 -AIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEG 432
Query: 178 LDPLNNGYHVVLS 190
++P + + +LS
Sbjct: 433 VEPNDITFTSILS 445
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 6/159 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++GF ++ V L+DMY KCG + A VF M R V W+AMI +
Sbjct: 154 VHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAER 213
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF--YSMTTEYGIIPQIEH 119
+AL F KM E G + +T I + A G +G +GR + G I +
Sbjct: 214 PLKALMLFRKMQEEGFLGDEITAISVASAVGQLG---DGRMAISVHGYAVLNGFIGDVSV 270
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V + ++ G ++ A M + NG+ W ++L G
Sbjct: 271 GNSIVGMYAKCGNVERARLVFDRME-ERNGISWNSMLSG 308
>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 343 bits (881), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 163/354 (46%), Positives = 232/354 (65%), Gaps = 3/354 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAI 58
++H + S + + N ++DMY+KCG L+ A +F E+ ER V +W+ +I G +
Sbjct: 324 KLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGV 383
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
HG KEAL F++M G++PN +TF +L AC H G +DEGR+ F MT + + P+++
Sbjct: 384 HGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMT-KLSVRPEMK 442
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
HY CMVD+L RAGFL EA+ I+ +P +P+ VWGALL CR+H N +L E A+ L QL
Sbjct: 443 HYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQL 502
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
+P + GY+V++SNIYA + +W++V VR+ M++ G+KK +S I VH F D++
Sbjct: 503 EPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQS 562
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
P ++++ E L MK+ GY+P+ S VL D+E ++KE L HSEKLA+ FG+M
Sbjct: 563 SPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMD 622
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PI++ KNLRVC DCH AFK IS I R+I+VRD NRFH FQ G CSCGDYW
Sbjct: 623 QGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 676
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 82/161 (50%), Gaps = 6/161 (3%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH 93
AR VF MEER +W++M+ G +G+ +AL+ FN+M PN VT + ++ AC +
Sbjct: 256 ARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSY 315
Query: 94 MGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGV-V 151
+G GR+ + ++++ I + + ++D+ + G L A E N + V
Sbjct: 316 LGSKHLGRKLHNFVISSKMDIDTTLRN--AIMDMYMKCGDLDTAVEMFNNCELGERDVSS 373
Query: 152 WGALLGGCRVHKNIDLAEE--ASRQLDQLDPLNNGYHVVLS 190
W L+ G VH + A E + Q++ ++P + + +LS
Sbjct: 374 WNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILS 414
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 68/165 (41%), Gaps = 12/165 (7%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++GF ++ V L+DMY KCG + A VF M R V W+AMI +
Sbjct: 154 VHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAER 213
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMG----WVDEGRRFFYSMTTEYGIIPQI 117
+AL F KM E G + +T I + A G +G + R F M GI
Sbjct: 214 PLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDRMEERNGI---- 269
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIK---PNGVVWGALLGGC 159
+ M+ ++ G +A M PN V ++ C
Sbjct: 270 -SWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSAC 313
>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Glycine max]
Length = 923
Score = 343 bits (881), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 164/354 (46%), Positives = 232/354 (65%), Gaps = 5/354 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + GF + ++L+DMY CG +E +R++F +++R + W++MI +HG
Sbjct: 572 IHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGC 631
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+A+ F KM + + P+ +TF+ LL+AC H G + EG+RFF M Y + P EHY
Sbjct: 632 GNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYA 691
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLLSR+ L+EAY F+RNMPIKP+ +W ALLG C +H N +L E A+++L Q D
Sbjct: 692 CMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKELLQSDTE 751
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G + ++SNI+A RW DV VR M+ G+KK PG S I VD +H F+A D++HPQ
Sbjct: 752 NSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQ 811
Query: 242 AEKIF---QMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
+ I+ + KLL+ K GYI T V ++ E+EK + LY HSE+LAL +GL+ TP
Sbjct: 812 TDDIYLKLAQFTKLLE--KKGGYIAQTKFVFHNVSEEEKTQMLYGHSERLALGYGLLVTP 869
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GT IRI KNLR+C+DCH FK+ SE+ R +VVRD NRFH F+ G CSCGD+W
Sbjct: 870 KGTCIRITKNLRICDDCHTFFKIASEVSQRPLVVRDANRFHHFERGLCSCGDFW 923
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 16/165 (9%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIH 59
+H + + G+ + VCN LI MY KCG L GAR +F I ME+ +W+++I
Sbjct: 167 IHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAE 226
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G EAL+ F +M E+G+ N TF+ L +V G +G + + H
Sbjct: 227 GNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGI-------HGAVLKSNH 279
Query: 120 YG------CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ ++ + ++ G +++A +M + + V W LL G
Sbjct: 280 FADVYVANALIAMYAKCGRMEDAGRVFESMLCR-DYVSWNTLLSG 323
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
L+ MY KCG L A +VF EM ERT+F+W+A++ G+ EA+ + M +G+ +
Sbjct: 85 LVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAID 144
Query: 81 GVTFIGLLHACGHMG 95
TF +L ACG +G
Sbjct: 145 ACTFPSVLKACGALG 159
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 8/160 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +S ++ V N LI MY KCG +E A RVF M R +W+ ++ GL +
Sbjct: 270 IHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNEL 329
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+AL F M G KP+ V+ + L+ A G G + +G+ ++ G+ ++
Sbjct: 330 YSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKE-VHAYAIRNGLDSNMQIGN 388
Query: 122 CMVDLLSR---AGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ ++ ++ A+E + + + W ++ G
Sbjct: 389 TLVDMYAKCCCVKYMGHAFECMHEKDL----ISWTTIIAG 424
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 16/170 (9%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y+ ++G N+++ NTL+DMY KC C++ F M E+ + +W+ +I G A +
Sbjct: 371 VHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEF 430
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM---GWVDEGRRFFYSMTTEYGIIPQIE 118
EA+ F K+ G+ + + +L AC + ++ E + + + I
Sbjct: 431 HLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRD-----LADIM 485
Query: 119 HYGCMVDLLSRAG---FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNI 165
+V++ G + + A+E IR+ I V W +++ C VH +
Sbjct: 486 LQNAIVNVYGEVGHIDYARRAFESIRSKDI----VSWTSMITCC-VHNGL 530
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/204 (19%), Positives = 96/204 (47%), Gaps = 12/204 (5%)
Query: 11 FRRN---IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
F+R+ I + N ++++Y + G ++ ARR F + + + +W++MI +G EAL
Sbjct: 477 FKRDLADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALE 536
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F + + I+P+ + I L A ++ + +G+ + G + +VD+
Sbjct: 537 LFYSLKQTNIQPDSIAIISALSATANLSSLKKGKE-IHGFLIRKGFFLEGPIASSLVDMY 595
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASRQ---LDQLDP 180
+ G ++ + + ++ + + ++W +++ +H K I L ++ + Q D +
Sbjct: 596 ACCGTVENSRKMFHSVK-QRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITF 654
Query: 181 LNNGYHVVLSNIYAEAERWEDVAR 204
L Y S + E +R+ ++ +
Sbjct: 655 LALLYACSHSGLMVEGKRFFEIMK 678
>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 343 bits (881), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 170/352 (48%), Positives = 233/352 (66%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +S F ++ V + L+ MY+KCG L A++VF + V W+++I G A HG
Sbjct: 434 IHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGL 493
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL F+ M GI P+ VTF+G+L AC + G V +G F SM T+Y + +IEHY
Sbjct: 494 GVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYA 553
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L EA + I MP++ + ++WGALLG CR H +DLAE A+++L L+P
Sbjct: 554 CMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPK 613
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET-HP 240
N G ++LSNIYA RW+DVA +R+ MR+ V K PG S I V+ VH+F GD + HP
Sbjct: 614 NAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHP 673
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I ++ E L ++ GY P+ S VL D++E+EK + L HSEKLA+ +GL+ P G
Sbjct: 674 EHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIG 733
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+MKNLRVC DCHAA KLI+++ REI++RD NRFH F+ GSCSC DYW
Sbjct: 734 MPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 13/160 (8%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N+LI Y + G +E AR VF EM ++ + +W++++ G + + +EA F+KM E
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE---- 157
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
N +++ GL+ + G ++E R F M + + MV + G + EA
Sbjct: 158 RNTISWNGLVSGYINNGMINEAREVFDRMPER-----NVVSWTAMVRGYVKEGMISEAET 212
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
MP K N V W +LGG ID EA R D +
Sbjct: 213 LFWQMPEK-NVVSWTVMLGGLLQEGRID---EACRLFDMM 248
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 104/241 (43%), Gaps = 25/241 (10%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN N L+ Y+ G + AR VF M ER V +W+AM++G G EA T F +M
Sbjct: 158 RNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQM 217
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E + V GLL G +DE R F M E ++ + M+ + G
Sbjct: 218 PEKNVVSWTVMLGGLLQE----GRIDEACRLF-DMMPEKDVVTRTN----MIGGYCQVGR 268
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYH-VVLSN 191
L EA MP + N V W ++ G ++ +D+A R+L ++ P N +
Sbjct: 269 LVEARMLFDEMP-RRNVVSWTTMITGYVQNQQVDIA----RKLFEVMPEKNEVSWTAMLK 323
Query: 192 IYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIF-QMWE 250
Y R ++ + + M P S + + ++ F E P+A ++F QM E
Sbjct: 324 GYTNCGRLDEASELFNAM--------PIKSVVACNAMILCFGQNGEV-PKARQVFDQMRE 374
Query: 251 K 251
K
Sbjct: 375 K 375
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 4/151 (2%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+++ CN +I + + G + AR+VF +M E+ TWSAMI+ G +AL F M
Sbjct: 344 KSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMM 403
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMT-TEYGIIPQIEHYGCMVDLLSRAG 131
GI+PN + I +L C + +D GR + +++ + + ++ + + G
Sbjct: 404 QREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDL--DVYVASVLLSMYIKCG 461
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
L +A + +K + V+W +++ G H
Sbjct: 462 NLAKAKQVFDRFAVK-DVVMWNSIITGYAQH 491
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 97/224 (43%), Gaps = 18/224 (8%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
RRN+ T+I YV+ ++ AR++F M E+ +W+AM++G G+ EA FN
Sbjct: 281 RRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNA 340
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M + V ++ G G V + R+ F M + + M+ + R G
Sbjct: 341 MPIKSV----VACNAMILCFGQNGEVPKARQVFDQMREK-----DEGTWSAMIKVYERKG 391
Query: 132 FLQEAYEFIRNMP---IKPNGVVWGALLGGCRVHKNIDLAEEASRQL--DQLDPLNNGYH 186
+A E R M I+PN ++L C N+D E QL Q D L+
Sbjct: 392 LELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFD-LDVYVA 450
Query: 187 VVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVH 230
VL ++Y + ++A+ +++ VK W+SI H
Sbjct: 451 SVLLSMYIKC---GNLAKAKQVFDRFAVKDVVMWNSIITGYAQH 491
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 93/212 (43%), Gaps = 18/212 (8%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+NI N+++ Y + + A+ +F +M ER +W+ ++ G +G EA F++M
Sbjct: 127 KNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRM 186
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E N V++ ++ G + E F+ M + + + M+ L + G
Sbjct: 187 PE----RNVVSWTAMVRGYVKEGMISEAETLFWQMPEK-----NVVSWTVMLGGLLQEGR 237
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGG-CRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSN 191
+ EA MP K + V ++GG C+V + + EA D++ N +
Sbjct: 238 IDEACRLFDMMPEK-DVVTRTNMIGGYCQVGRLV----EARMLFDEMPRRNVVSWTTMIT 292
Query: 192 IYAEAERWEDVARVRKLMRNLGVKKTPGWSSI 223
Y + ++ D+A RKL + K W+++
Sbjct: 293 GYVQNQQ-VDIA--RKLFEVMPEKNEVSWTAM 321
>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic [Vitis vinifera]
gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 343 bits (881), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 161/352 (45%), Positives = 230/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH + ++ F NI V + +IDMY CG LE A+R F M E+ V W+AMI G ++G
Sbjct: 346 RVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNG 405
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+ F +M G+ P+ TF+ +L+AC H G V EG + FY M +IP ++HY
Sbjct: 406 YGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHY 465
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C++D+L RAG L AY FI NMP +P+ V+ LLG CR+H NI L E S+++ +++P
Sbjct: 466 ACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEP 525
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ GY+V+LSN+YA A WE V R +R+ +KK PG+SSI ++ ++ F+AG++ HP
Sbjct: 526 NDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEINQEIYTFMAGEKDHP 585
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q KI + + L+ +K GY+PNT+V+L D+ + K+ LY HSEK+A+ FGLM T P
Sbjct: 586 QYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPE 645
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IRI KNLR C+DCH A K +S++ R +V++D NRFH FQ G CSC DYW
Sbjct: 646 TIIRITKNLRTCDDCHTASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + ++G+ + + L+D+YV C++ A RVF EM + V W+ M+ G +
Sbjct: 245 IHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRH 304
Query: 62 AKEALTSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A+ FNKM+ I +K + + +G+L +C H G + +GRR +++ + I
Sbjct: 305 WDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRR-VHALAIKTCFANNIFVG 363
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ + G L++A F M K + V W A++ G
Sbjct: 364 SAVIDMYANCGNLEDAKRFFYGMGEK-DVVCWNAMIAG 400
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 5/171 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H SG N + N+L++ YV CG L A+++F + V +W+ +I GLA +
Sbjct: 42 QIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKND 101
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA+ F +MI KPN VT +L A ++G + + + G +
Sbjct: 102 CFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKS-VHCFWVRGGFEGNVFVE 160
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
+VD+ S+ G + A + +M + N V W A++ G H +EEA
Sbjct: 161 TALVDMYSKFGCMGVARQLFESMS-ERNVVTWNAIVSGYSDH---GFSEEA 207
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 4/168 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + GF N+ V L+DMY K GC+ AR++F M ER V TW+A++ G + HG
Sbjct: 144 VHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGF 203
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHY 120
++EA+ FN M G+ + T + L+ A +G + G + + T Y I+
Sbjct: 204 SEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIK-- 261
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++D+ + +A+ M +K + W +L G ++ D A
Sbjct: 262 TALMDIYVSHNCVDDAHRVFSEMSVK-DVAAWTLMLTGFSSGRHWDRA 308
>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 802
Score = 343 bits (881), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 161/350 (46%), Positives = 232/350 (66%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y + G+ + L+ +Y KCG E ARRVF +M + +W+++I G A +GQ
Sbjct: 319 VHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQ 378
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AL F ++ G KP+ +TF+G+L AC H G VD G +F+S+ ++G++ +HY
Sbjct: 379 PDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYA 438
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C++DLL+R+G +EA I NMP+KP+ +W +LLGGCR+H NI+LAE A++ L +L+P
Sbjct: 439 CVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPE 498
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N ++ LSNIYA A W + +VR M N G+ K PG S I + VH F+ GD +HP+
Sbjct: 499 NPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWIEIKRQVHVFLVGDTSHPK 558
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
I + +L MK +GY+ +T+ VL D+EE++KE+ ++ HSEKLA+ FG+++T PGT
Sbjct: 559 ISDIHEYLGELSKKMKEEGYVADTNFVLHDVEEEQKEQNIFYHSEKLAVAFGIISTSPGT 618
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDY 351
PI++ KNLR C DCH A K IS+IV R+I+VRD NRFHCF GSCSC DY
Sbjct: 619 PIKVFKNLRTCVDCHNAMKYISKIVQRKIIVRDSNRFHCFVDGSCSCKDY 668
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 2/167 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y +SG + V L+D+Y KCG L AR +F +M ++ + +W+ MI G+
Sbjct: 218 IHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGR 277
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KE + F ++ G++PN TF G+L+AC + G+ + T G P
Sbjct: 278 KKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKE-VHGYMTRVGYDPFSFAAS 336
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
+V + S+ G + A MP +P+ V W +L+ G + D+A
Sbjct: 337 ALVHVYSKCGNTETARRVFNQMP-RPDLVSWTSLIVGYAQNGQPDMA 382
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH ++ S F I + N LI MY KCG L A+ +F E+ ++ + +W+ MI G A G
Sbjct: 84 RVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVG 143
Query: 61 QAKEALTSFNKM 72
+ ++A F++M
Sbjct: 144 RIEQARKLFDEM 155
>gi|115476560|ref|NP_001061876.1| Os08g0434000 [Oryza sativa Japonica Group]
gi|42407498|dbj|BAD10615.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|42409483|dbj|BAD09839.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113623845|dbj|BAF23790.1| Os08g0434000 [Oryza sativa Japonica Group]
Length = 601
Score = 343 bits (881), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 160/353 (45%), Positives = 231/353 (65%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+V EY+ G+ ++V N+LI MY KCGC++ A +VF E +++V TWSAMI GLA +G
Sbjct: 249 KVWEYAVDHGYGGELKVRNSLITMYTKCGCVDKAYQVFCETPKKSVVTWSAMISGLASNG 308
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
K+A+++F +M G+ P+ TF G+L AC H G VDEG +FF M EY + P + HY
Sbjct: 309 FGKDAISAFEEMGRSGVAPDEQTFTGVLSACSHSGLVDEGFKFFDIMCYEYQLKPNVHHY 368
Query: 121 GCMVDLLSRAGFLQEAYEFI-RNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
GCMVDL+ RAG L +AYE + ++M + P+ +W LLG CR+H +IDL E L +L
Sbjct: 369 GCMVDLMGRAGLLDQAYELVVKDMRVAPDATIWRTLLGACRIHGHIDLGERVINHLIELK 428
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
G +V+L N YA E W VA VRKLM+ G++ TPG +++ ++G +HEF+A D +H
Sbjct: 429 AQQAGDYVLLLNTYAAVEDWGKVAEVRKLMKEKGIQTTPGCTTVELNGEIHEFIAADASH 488
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ +I++ +++ +++ GY+PN S L D++ + KE L HSEKLA+ F L+ TP
Sbjct: 489 PRKAEIYEKLDEINKHLRIAGYVPNVSSELHDLDSEGKECALAYHSEKLAIAFALLVTPQ 548
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLRVC DCH K+ S + +R ++VRDR RFH F+ CSC DYW
Sbjct: 549 HRPIRLAKNLRVCVDCHNFTKVFSGVYHRLVIVRDRTRFHHFKEFQCSCNDYW 601
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 4/160 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H G + + +L+ Y CG + AR+VF EM R W+ +I +
Sbjct: 146 QLHANVVAEGHSPDALLATSLVSSYAACGDGDSARKVFDEMPVRDTIAWNVLITCYTRNR 205
Query: 61 QAKEALTSFNKMI--EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+ K+AL F+ M E G +P+ VT I LL AC +G +D G + + ++G +++
Sbjct: 206 RTKDALKLFDAMRGGENGAEPDDVTCILLLQACTSLGALDFGEK-VWEYAVDHGYGGELK 264
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + ++ G + +AY+ P K + V W A++ G
Sbjct: 265 VRNSLITMYTKCGCVDKAYQVFCETP-KKSVVTWSAMISG 303
>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
Length = 650
Score = 343 bits (881), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 165/342 (48%), Positives = 229/342 (66%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
+ R++ + N L+DMY KCG LE A +F M +R V +WS MI GLA +G++ EAL F+
Sbjct: 309 YERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAEALRVFD 368
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
M G+ PN +T +G+L AC H G V++G +F SM +GI P+ EH+ CMVDLL RA
Sbjct: 369 LMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREHHNCMVDLLGRA 428
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190
G L EA EFIR+M ++P+ V+W LLG CR+HK+ +LA A+R++ +L+P + G V+LS
Sbjct: 429 GKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAYAAREILKLEPDDQGARVLLS 488
Query: 191 NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWE 250
N YA+ +W D + K MR+ G+KK PG S I ++ VH F+AGD +HP ++ I Q
Sbjct: 489 NTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKHVHVFIAGDLSHPCSDTIVQELN 548
Query: 251 KLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLR 310
+L+ + GY+P T VL D+ ++KE L HSEK+A+ FG M+ G PIRIMKNLR
Sbjct: 549 RLIGRISALGYVPQTEFVLQDLAIEQKEDLLKYHSEKMAIAFGTMHAVGGKPIRIMKNLR 608
Query: 311 VCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+C DCHA KL+S+ R I++RD RFH FQ G+CSCGDYW
Sbjct: 609 ICGDCHAFAKLVSKSEGRMIIIRDPVRFHHFQDGACSCGDYW 650
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 6/158 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G ++ V ++LID Y+K G L+G RRVF EM R + W+++I G A G
Sbjct: 201 LHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGD 260
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHY 120
A+ F +M + G N T +L AC M ++ GR+ + + E +I +
Sbjct: 261 GVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHVLKYERDLIL----H 316
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ + G L++A MP + + + W ++ G
Sbjct: 317 NALLDMYCKCGSLEDAEALFHRMPQR-DVISWSTMISG 353
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 8/159 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLA-IH 59
++ YS +G I V N+L+ MY K G L+ A R+F M ER V TW+ ++ LA
Sbjct: 103 QLSHYSGGAG--GGIFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANAD 160
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G+ +EAL M G+ PN TF +L ACG G + ++ T + G+ +
Sbjct: 161 GRKEEALRFLVAMWRDGVAPNAYTFSSVLGACGTPGVLAA----LHASTVKVGLDSDVFV 216
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D + G L M + + VVW +++ G
Sbjct: 217 RSSLIDAYMKLGDLDGGRRVFDEM-VTRDLVVWNSIIAG 254
>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Cucumis sativus]
Length = 673
Score = 343 bits (880), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 165/348 (47%), Positives = 233/348 (66%), Gaps = 1/348 (0%)
Query: 5 YSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKE 64
Y ++S +R + V LIDMY KCG + AR VF + ++ V WS MI G +HG +E
Sbjct: 327 YISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQE 386
Query: 65 ALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMV 124
A+ +N+M + G+ PN TFIGLL AC + G V EG F+ M ++GI P +HY C+V
Sbjct: 387 AICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMP-DHGIEPHHQHYSCVV 445
Query: 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNG 184
DLL RAG+L +AY+FI +MPIKP VWGALL C++H+ + L E A+ QL LDP N G
Sbjct: 446 DLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTG 505
Query: 185 YHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEK 244
++V LSN+YA A W VA VR +M G+ K G SSI ++G + F GD +HP++++
Sbjct: 506 HYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKE 565
Query: 245 IFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIR 304
IF+ ++L +K GY+P+ VL D+ +E E+ L HSE+LA+ +G+++T PGT +R
Sbjct: 566 IFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTLR 625
Query: 305 IMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I KNLR C +CH+A KLIS++V+REI++RD RFH F+ G CSCGD+W
Sbjct: 626 ITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 673
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 96/178 (53%), Gaps = 5/178 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + GF N+ V N+L+ MY K G + AR VF ++ +RTV +W+++I G +G
Sbjct: 121 QIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNG 180
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL F +M + +KP+ + + ++ A ++ + +G+ + + T+ G+ + +
Sbjct: 181 DPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKS-IHGLVTKLGLEFEPDIV 239
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ + ++ G ++ A F M KPN ++W A++ G + N EEA + ++
Sbjct: 240 ISLTTMYAKRGLVEVARFFFNRME-KPNLILWNAMISG---YANNGYGEEAIKLFREM 293
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G + +L MY K G +E AR F ME+ + W+AMI G A +G
Sbjct: 223 IHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGY 282
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR 101
+EA+ F +MI I+ + +T + A +G ++ R
Sbjct: 283 GEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELAR 322
>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
Length = 485
Score = 343 bits (880), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 232/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + GF ++ VCN L++ Y +CG L A+ VF M R V +WS+MI A G
Sbjct: 134 KIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMISAFAQRG 193
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EA+ +++M+ G P+ + FI +L AC + G V+ FF S+ + + P +EHY
Sbjct: 194 RVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHY 253
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVD+L RAG L++A + +R MP P +++ +L C+++ +++ E A+ + +LDP
Sbjct: 254 ACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDP 313
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+ ++ L+NIY+ A+R +D AR+RKLM G+KK PG S I V VHEF+AGD+ HP
Sbjct: 314 ENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGDKMHP 373
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q ++I+ ++L MK GY +T VVL D+EE EKE L+ HSEKLA+ FGL++TPPG
Sbjct: 374 QRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAFGLISTPPG 433
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P+RI+KNLRVC DCHAA K+IS++ REI+VRD NRFH F G CSC DYW
Sbjct: 434 APLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFLDGMCSCNDYW 485
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 4/172 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH +G ++ V L++MY KC +E AR F ++ V +WSAM+ A +G
Sbjct: 31 RVHSRVAGAGLEVDVIVGTALVNMYGKCQSVEEARAAFEKISRPNVVSWSAMLAAYAQNG 90
Query: 61 QAKEALTSFNKM--IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
A+ AL + +M G+ PN VTFI LL AC +G + EGR+ ++ E G +
Sbjct: 91 HARMALELYREMGSARKGMAPNRVTFITLLDACSFLGALAEGRK-IHAAVAERGFDTDLV 149
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
+V+ R G L +A M + + + W +++ +D A E
Sbjct: 150 VCNALVNFYGRCGSLGDAKIVFDGMR-RRDVISWSSMISAFAQRGRVDEAME 200
>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
Length = 587
Score = 343 bits (880), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 171/352 (48%), Positives = 231/352 (65%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + +S NI V + L+DMY KCGC+E A ++F E +R + TW+AMI G A G
Sbjct: 236 LHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGD 295
Query: 62 AKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A+ AL F+ MI G PN +T + ++ +C G +G F +M +GI P+ EHY
Sbjct: 296 AQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHY 355
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL RAG ++AYE I+ MP++P+ VWGALLG C++H +L A+ +L +LDP
Sbjct: 356 ACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDP 415
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++G HV+LSN++A A RW + +RK M+N+G+KK PG S +T VVH F A D H
Sbjct: 416 QDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGCSWVTWKNVVHVFRAKDTKHE 475
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+I + KL M+ GY+P+T L D+EE+EKE +++HSEKLAL FGL+ PPG
Sbjct: 476 MYNEIQALLSKLRKQMQAAGYMPDTQYSLYDLEEEEKESEVFQHSEKLALAFGLICIPPG 535
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRIMKNLR+C DCH AFK IS IV REI+VRD NRFH F+ CSCGDYW
Sbjct: 536 VPIRIMKNLRICVDCHRAFKFISGIVGREIIVRDNNRFHHFKQYQCSCGDYW 587
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 5/178 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H + + GF ++ V N+++D Y KC C AR VF M R +W +M+ A +G
Sbjct: 134 QFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNG 193
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA ++ G +P L C + + GR +++ I I
Sbjct: 194 AEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRA-LHAVAVRSCIDANIFVA 252
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+VD+ + G +++A + P + N V W A++GG + +I A+ A D +
Sbjct: 253 SALVDMYGKCGCVEDAEQIFYETPQR-NLVTWNAMIGG---YAHIGDAQNALLVFDDM 306
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Query: 22 IDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNG 81
+DMY K G L+ AR +F EM R V W+A++ + G+ E + ++ + E G PN
Sbjct: 54 LDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNV 113
Query: 82 VTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIR 141
V+ +AC ++ G + F+ + G + MVD + +A
Sbjct: 114 VSACAFFNACAGAMYLSLGEQ-FHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFD 172
Query: 142 NMPIKPNGVVWGALLGG 158
M ++ N V W +++
Sbjct: 173 GMGVR-NSVSWCSMVAA 188
>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g16835, mitochondrial; AltName: Full=Protein DYW10;
Flags: Precursor
gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 656
Score = 343 bits (880), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 171/352 (48%), Positives = 232/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H+ ++S ++ +LI MY KCG L A ++F M+++ V W+AMI G A HG
Sbjct: 305 QIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHG 364
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A +AL F +MI+ I+P+ +TF+ +L AC H G V+ G +F SM +Y + PQ +HY
Sbjct: 365 NADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHY 424
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG L+EA + IR+MP +P+ V+G LLG CRVHKN++LAE A+ +L QL+
Sbjct: 425 TCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNS 484
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N +V L+NIYA RWEDVARVRK M+ V K PG+S I + VH F + D HP
Sbjct: 485 QNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHP 544
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ + I + ++L MKL GY P L ++EE++KEK L HSEKLA+ FG + P G
Sbjct: 545 ELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQG 604
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ I++ KNLR+C DCH A K ISEI REI+VRD RFH F+ GSCSCGDYW
Sbjct: 605 SQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 3/157 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
R + +I Y+K +E A +F +M + + TW+AMI G + + ++ L F
Sbjct: 215 RGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRA 274
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M+E GI+PN L C + + GR+ + + ++ + + ++ + + G
Sbjct: 275 MLEEGIRPNSSGLSSALLGCSELSALQLGRQ-IHQIVSKSTLCNDVTALTSLISMYCKCG 333
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
L +A++ M K + V W A++ G H N D A
Sbjct: 334 ELGDAWKLFEVMK-KKDVVAWNAMISGYAQHGNADKA 369
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 107/249 (42%), Gaps = 39/249 (15%)
Query: 4 EYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLA------ 57
+Y + + I N +I V+ G ++GA RVF M + TW++++ G++
Sbjct: 50 DYLTKPSDQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRM 109
Query: 58 -----IHGQAKEALT-SFNKMIEIGIK----------------PNGVTFIGLLHACGHMG 95
+ + E T S+N M+ ++ + ++ ++ G
Sbjct: 110 MEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRG 169
Query: 96 WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV-WGA 154
+++ R FYSM + + + M+ G L++A F + P++ GVV W A
Sbjct: 170 EMEKARELFYSMMEKNEV-----SWNAMISGYIECGDLEKASHFFKVAPVR--GVVAWTA 222
Query: 155 LLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGV 214
++ G K ++LAE + + L ++ ++S Y E R ED ++ + M G+
Sbjct: 223 MITGYMKAKKVELAEAMFKDMTVNKNLVT-WNAMISG-YVENSRPEDGLKLFRAMLEEGI 280
Query: 215 K-KTPGWSS 222
+ + G SS
Sbjct: 281 RPNSSGLSS 289
>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Glycine max]
Length = 618
Score = 343 bits (880), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 160/353 (45%), Positives = 232/353 (65%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFI-EMEERTVFTWSAMIQGLAIH 59
+VH S++SGF NI V ++LIDMY KCGC+ A VF +E R++ W+AMI G A H
Sbjct: 266 QVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARH 325
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+A EA+ F KM + G P+ VT++ +L+AC HMG +EG+++F M ++ + P + H
Sbjct: 326 ARAPEAMILFEKMQQRGFFPDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLH 385
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CM+D+L RAG + +AY+ I MP +WG+LL C+++ NI+ AE A++ L +++
Sbjct: 386 YSCMIDILGRAGLVHKAYDLIERMPFNATSSMWGSLLASCKIYGNIEFAEIAAKYLFEME 445
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N G H++L+NIYA ++W++VAR RKL+R V+K G S I + +H F G+ H
Sbjct: 446 PNNAGNHILLANIYAANKKWDEVARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNH 505
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
PQ + I+ + L+ +K Y +TS L D+EE K+ L HSEKLA+TFGLM P
Sbjct: 506 PQIDDIYAKLDNLVVELKKLNYKVDTSNDLHDVEENRKQMLLRHHSEKLAITFGLMCLPR 565
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLR+C DCH KL+S+ +REI+VRD NRFH F+ G CSCG++W
Sbjct: 566 DIPIRIIKNLRICGDCHTFMKLVSKSTSREIIVRDTNRFHHFKDGFCSCGEFW 618
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 121/274 (44%), Gaps = 19/274 (6%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +S ++ N V L+ +Y KC ++ A ++F M E+ TWS+M+ G +G
Sbjct: 165 QLHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNG 224
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F +G + + AC + + EG++ ++++ + G I
Sbjct: 225 FHEEALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQ-VHAISHKSGFGSNIYVS 283
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ--L 178
++D+ ++ G ++EAY + + + V+W A++ G H A ++ Q
Sbjct: 284 SSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGF 343
Query: 179 DPLNNGYHVVLS-----NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD-----GV 228
P + Y VL+ ++ E +++ D+ ++R + + S +D G+
Sbjct: 344 FPDDVTYVCVLNACSHMGLHEEGQKYFDL-----MVRQHNLSPSVLHYSCMIDILGRAGL 398
Query: 229 VHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYI 262
VH+ E P MW LL K+ G I
Sbjct: 399 VHKAYDLIERMP-FNATSSMWGSLLASCKIYGNI 431
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 2/149 (1%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G +I N LI+MY KC ++ AR+ F EM +++ +W+ +I L + + +EAL
Sbjct: 73 GLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVKSLVSWNTVIGALTQNAEDREALKLL 132
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+M G N T +L C + E + ++ + + I ++ + ++
Sbjct: 133 IQMQREGTPFNEFTISSVLCNCAFKCAILECMQ-LHAFSIKAAIDSNCFVGTALLHVYAK 191
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+++A + +MP K N V W +++ G
Sbjct: 192 CSSIKDASQMFESMPEK-NAVTWSSMMAG 219
>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 343 bits (880), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 161/352 (45%), Positives = 227/352 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SG ++ V N+L+ MY KCG + A R F M R V +W+A+I G A +G
Sbjct: 163 QIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNG 222
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ K +L +++MI G KP+ +TFIGLL AC H G + GR +F +M YGI P EHY
Sbjct: 223 RGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHY 282
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DLL R+G L EA + M + P+ VVW ALL CRVHK ++L E A++ L +L+P
Sbjct: 283 ACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAACRVHKELELGEMAAKNLFELEP 342
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+N+ +V+LSN+Y+ A +WED AR+R+LMR+ G+ K PG+S I + V F++ D HP
Sbjct: 343 MNSMPYVMLSNMYSAAGKWEDAARIRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHP 402
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+I+ ++++ +K GY+P+ S L D +++ KE L HSEKLA+ FGL+ P G
Sbjct: 403 LRNEIYSKIDEIIMLIKEAGYVPDMSFALHDTDDEVKELGLAYHSEKLAVAFGLLTVPQG 462
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH A K S++ R I++RD N FH F G CSCGDYW
Sbjct: 463 APIRIFKNLRVCGDCHTAMKYTSKVYARHIILRDSNCFHHFTEGRCSCGDYW 514
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 83/157 (52%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++GF V N LIDMY K G L+ A VF +M ++ V +W++++ G + +G
Sbjct: 63 VHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGS 122
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA+ F KM G+ P+ + +L AC + +D G++ ++ + G+ +
Sbjct: 123 YEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQ-IHATLVKSGLESSLSVDN 181
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V + ++ G + +A NMP + + + W AL+ G
Sbjct: 182 SLVTMYAKCGSIVDANRAFDNMPTR-DVISWTALIVG 217
>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 695
Score = 343 bits (880), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 159/336 (47%), Positives = 226/336 (67%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V +TL+DMY KCG + + ++F E+E T W+A I LA HG +EA+ +F++M G
Sbjct: 360 VSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRMTSSG 419
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
I+PN +TF+ LL AC H G VDEG ++FYSM +GI P+ EHY C++D+ RAG L EA
Sbjct: 420 IRPNHITFVSLLTACSHAGLVDEGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRAGRLDEA 479
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
+FI MP+KPN W +LLG CR+ N +L E A+ + +L+P N G HV LS IYA
Sbjct: 480 EKFIGEMPVKPNAYGWCSLLGACRMRGNKELGEIAADNMMKLEPDNTGVHVSLSGIYASL 539
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGM 256
+WEDV VRKLMR+ +KK PG+S + + H F + D +HPQ EKI++ E+L + +
Sbjct: 540 GQWEDVKAVRKLMRDNRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQEKIYEKLEELYERI 599
Query: 257 KLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCH 316
K +GY+P+T + ++E+ K++ L HSE++A+ F L++ P PI + KNLR+C DCH
Sbjct: 600 KEEGYVPDTRFLPCNLEDTAKQRILRYHSERIAVAFALISMPATKPIIVKKNLRICADCH 659
Query: 317 AAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+A K IS++ NR+I+VRD +RFH F G CSCGDYW
Sbjct: 660 SALKFISKVENRDIIVRDNSRFHHFVKGGCSCGDYW 695
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 2/179 (1%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
+ N LI MY C + A R+F M + +W+ ++ GL + ++AL +F+ M G
Sbjct: 55 LANHLITMYSHCADVPSAVRLFDAMPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAG 114
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
+ P A + G + + + G ++ + D+ S++G L EA
Sbjct: 115 LVPTQFALSSAARAAAALAARHAGAQ-LHCVGVRLGFDAELFVASNLADMYSKSGLLVEA 173
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAE 195
MP K + V W A++ G + N++ A A R + + + HV+ S + A
Sbjct: 174 CRVFDQMPQK-DAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSAS 231
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 6/152 (3%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF + V + L DMY K G L A RVF +M ++ W+AMI G A +G + A+ +F
Sbjct: 149 GFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAF 208
Query: 70 NKMIEIG-IKPNGVTFIGLLHACGHM--GWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126
M G + + +L A G + GW+ R +S + G ++ + D+
Sbjct: 209 RDMRREGLVGADQHVLCSVLSASGGLKDGWL---ARAIHSCVMKSGFEQEVAVRNALTDM 265
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++A + A ++ N V +L+ G
Sbjct: 266 YAKAADMDNAARVVKIDQGSLNVVSATSLIDG 297
>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
Length = 983
Score = 343 bits (879), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 161/331 (48%), Positives = 224/331 (67%), Gaps = 1/331 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y + R + + L+DMY KCG ++ A VF M+E+ V W+ MI+GLA+HG+
Sbjct: 365 VHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGR 424
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL F++M +G+KP+ + FIG L AC H G VD+GR F SM +YGI P+IEHYG
Sbjct: 425 GSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYG 484
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL+R G L EA E + MP+KP+ ++WGAL+ GCR HKN++LAE + +L+P
Sbjct: 485 CMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPD 544
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+G +V+L NIYA + R +R LMR GV KTPG S++ + GV+H+F+ GD +HP
Sbjct: 545 KSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSHPF 604
Query: 242 AEKIFQMWEKLLDGMKL-KGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
E+I W+++ ++L +GY+P+ VLLDIEE+EKE L RHSEK+A+ F L+NT
Sbjct: 605 IEEILSKWDEIDSRIRLEEGYVPDKKEVLLDIEEEEKENALSRHSEKMAIAFALINTSDD 664
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIV 331
PIRI+KNLRVC DCH KLIS++ + +V
Sbjct: 665 MPIRIVKNLRVCHDCHHVTKLISKVFDLTVV 695
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 2/160 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NTLI Y + G + AR +F EM R +WSAM+ G G +EAL F +M G++
Sbjct: 281 NTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVR 340
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ +G+L AC +G +++G ++ + I + +VD+ ++ G +Q A E
Sbjct: 341 PDDTVLVGVLAACAQLGVLEQG-KWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAME 399
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ M K N + W ++ G +H A E Q+++L
Sbjct: 400 VFKVMKEK-NVLAWTTMIKGLAMHGRGSEALELFSQMERL 438
>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
Length = 808
Score = 343 bits (879), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 159/352 (45%), Positives = 227/352 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + Q GF + N L+ MY KCG + AR VF+ M +W+AMI L HG
Sbjct: 457 QLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHG 516
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F++M+ GI P+ ++F+ +L AC H G VDEG +F SM ++GI P +HY
Sbjct: 517 HGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHY 576
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
++DLL R+G + EA + I+ MP +P +W A+L GCR + +++ A+ QL ++ P
Sbjct: 577 ARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIP 636
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++G +++LSN Y+ A RW D ARVRKLMR+ GVKK PG S I V +H F+ GD HP
Sbjct: 637 QHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHP 696
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+A++++Q E + M+ GY+P+T VL D+E EKE L+ HSEKLA+ FGL+ PPG
Sbjct: 697 EAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPG 756
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ ++KNLR+C DCH A +S+ V REIVVRD RFH F+ G CSCG+YW
Sbjct: 757 ATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 808
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 104/252 (41%), Gaps = 16/252 (6%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NT++ Y+ GCL+ A VF M + +W M+ G G +++AL FN+M +K
Sbjct: 374 NTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVK 433
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P T+ G + ACG +G + GR+ ++ + G ++ + ++ G + +A
Sbjct: 434 PCDYTYAGAIAACGELGALKHGRQ-LHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARL 492
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL-----DPLNNGYHVVLSNIY 193
MP + V W A++ H + EA DQ+ DP + +L+
Sbjct: 493 VFLVMP-NLDSVSWNAMISALGQHGH---GREALELFDQMVAEGIDPDRISFLTILTACN 548
Query: 194 AEAERWEDVARVRKLMRNLGVKKTPGWSSITVD-----GVVHEFVAGDETHPQAEKIFQM 248
E + R+ G+ + +D G + E +T P E +
Sbjct: 549 HAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMP-FEPTPSI 607
Query: 249 WEKLLDGMKLKG 260
WE +L G + G
Sbjct: 608 WEAILSGCRTNG 619
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 9/201 (4%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
T++ YV+ G + AR VF E++ + W+AMI G G +A F +M+ +
Sbjct: 238 TTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVP 297
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMT-TEYGIIPQ--IEHYGCMVDLLSRAGFLQE 135
+ TF +L AC + G+ G+ + + +P+ + +V L S+ G +
Sbjct: 298 LDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVI 357
Query: 136 AYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYH-VVLSNIYA 194
A M +K + V W +L G +D A E + + P N +V+ + Y
Sbjct: 358 AKRIFDTMNLK-DVVSWNTILSGYIDSGCLDKAVEVFKVM----PYKNDLSWMVMVSGYV 412
Query: 195 EAERWEDVARVRKLMRNLGVK 215
ED ++ MR VK
Sbjct: 413 HGGLSEDALKLFNQMRAEDVK 433
>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
Length = 847
Score = 343 bits (879), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 163/352 (46%), Positives = 232/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ R+ V +TL+DMY KCG + + ++F E+E RT W+A+I A HG
Sbjct: 496 QLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHG 555
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ +F++MI GI+PN + F+ LL AC H G VDEG ++FYSM +GI P+ EHY
Sbjct: 556 HGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHY 615
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C++D RAG L EAY+FI MPIKPN W +LLG CR+ + +L E A++ L +L+P
Sbjct: 616 SCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEP 675
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G HV LS IYA +WEDV VRKLMR+ +KK PG+S + + H F + D +HP
Sbjct: 676 GNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHP 735
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q + I++ E+L +K +GYIP+TS + ++E+ KE+ L HSE++A+ F L++ P
Sbjct: 736 QQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERIAVAFALISMPAT 795
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PI + KNLR+C DCH AFK I ++ R+I+VRD +RFH F G CSCGDYW
Sbjct: 796 KPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 847
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 6 SNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEA 65
S GF + V + L DMY KCG L A RVF +M ++ W+AMI G A +G + A
Sbjct: 297 SASVGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAA 356
Query: 66 LTSFNKMIEIG-IKPNGVTFIGLLHACGHM--GWVDEGRRFFYSMTTEYGIIPQIEHYGC 122
+ SF M G + + F +L A G + GW+ + + T+ G ++
Sbjct: 357 VLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKS---IHCCVTKAGFELEVAVRNA 413
Query: 123 MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNI--DLAEEA 171
++D+ +++ ++ A R + I P G W + G + I D EEA
Sbjct: 414 LIDMYAKSMDVESAS---RVLKIDPGG--WNVVSGTSMIDGYIETDCVEEA 459
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 3/156 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF-IEMEERTVFTWSAMIQGLAIHG 60
+H ++GF + V N LIDMY K +E A RV I+ V + ++MI G
Sbjct: 395 IHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETD 454
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL + ++ G++PN TF ++ C +++G + ++ + +I
Sbjct: 455 CVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQ-LHAQVIKTDLIRDSFVG 513
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
+VD+ + G + + + + + + + W A++
Sbjct: 514 STLVDMYGKCGLISLSMQLFNEIEYRTD-IAWNAVI 548
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 3/179 (1%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
+ N LI MY C L A R+F M R +W+ ++ GL+ + +AL +F M G
Sbjct: 208 LANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAG 267
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
+ P A +G R S + G ++ + D+ S+ G L EA
Sbjct: 268 VAPTRFALSSAARAAAALGAPLRARSCTASASV--GFDTELFVASNLADMYSKCGLLSEA 325
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAE 195
MP K + V W A++ G + +++ A + R + + + HV S + A
Sbjct: 326 CRVFDQMPQK-DAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSAS 383
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
+ N LI MY C L A R+F M R +W+ ++ GL+ + +AL +F M G
Sbjct: 58 LANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAG 117
Query: 77 IKPNGVTFIGLLH 89
+ P + + H
Sbjct: 118 VAPTRLIYETKFH 130
>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 638
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 159/352 (45%), Positives = 236/352 (67%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+V+ ++SGF NI V ++LIDMY KCG +E + +VF ++E+R V W+AMI GL+ H
Sbjct: 287 QVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHA 346
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++ E + F KM ++G+ PN VTF+ +L ACGHMG V +G+++F MT E+ + P + HY
Sbjct: 347 RSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHY 406
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVD LSRAG + EAY+ I +P + +WG+LL CR H N++LAE A+++L ++P
Sbjct: 407 SCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEP 466
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G +++LSN+YA +W++VA++RKL++ VKK G S I + VH F+ G+ HP
Sbjct: 467 HNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHP 526
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ +++D ++ GY T L + E K++ L HSEKLA T GL+ PP
Sbjct: 527 KIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPN 586
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRIMKNLR+C DCH+ KL S+ R+++VRD NRFH F+ G CSCGD+W
Sbjct: 587 APIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 87/161 (54%), Gaps = 2/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ ++ N+ V L+D+Y KCG ++ A VF M +R+V TWS+M G +
Sbjct: 187 LHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEM 246
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL F K E G+K + ++ AC + + EG++ ++ ++ G I
Sbjct: 247 YEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQ-VNALLSKSGFCSNIFVAS 305
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++ G ++E+Y+ R++ K N V+W A++ G H
Sbjct: 306 SLIDMYAKCGGIEESYKVFRDVE-KRNVVLWNAMISGLSRH 345
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 2/149 (1%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G + ++ N LI+MY KCG ++ AR+VF EM R++ +W+ MI L +G+ EAL
Sbjct: 94 GLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLL 153
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+M G + T +L AC + E + ++ + + + ++D+ ++
Sbjct: 154 LQMQREGTPFSEFTISSVLCACAAKCALSEC-QLLHAFAIKAAMDLNVFVATALLDVYAK 212
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
G +++A +MP + + V W ++ G
Sbjct: 213 CGLMKDAVCVFESMPDR-SVVTWSSMAAG 240
>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
Length = 951
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 161/331 (48%), Positives = 224/331 (67%), Gaps = 1/331 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y + R + + L+DMY KCG ++ A VF M+E+ V W+ MI+GLA+HG+
Sbjct: 365 VHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGR 424
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL F++M +G+KP+ + FIG L AC H G VD+GR F SM +YGI P+IEHYG
Sbjct: 425 GSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYG 484
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL+R G L EA E + MP+KP+ ++WGAL+ GCR HKN++LAE + +L+P
Sbjct: 485 CMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPD 544
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+G +V+L NIYA + R +R LMR GV KTPG S++ + GV+H+F+ GD +HP
Sbjct: 545 KSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSHPF 604
Query: 242 AEKIFQMWEKLLDGMKL-KGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
E+I W+++ ++L +GY+P+ VLLDIEE+EKE L RHSEK+A+ F L+NT
Sbjct: 605 IEEILSKWDEIDSRIRLEEGYVPDKKEVLLDIEEEEKENALSRHSEKMAIAFALINTSDD 664
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIV 331
PIRI+KNLRVC DCH KLIS++ + +V
Sbjct: 665 MPIRIVKNLRVCHDCHHVTKLISKVFDLTVV 695
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 2/160 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NTLI Y + G + AR +F EM R +WSAM+ G G +EAL F +M G++
Sbjct: 281 NTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVR 340
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ +G+L AC +G +++G ++ + I + +VD+ ++ G +Q A E
Sbjct: 341 PDDTVLVGVLAACAQLGVLEQG-KWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAME 399
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ M K N + W ++ G +H A E Q+++L
Sbjct: 400 VFKVMKEK-NVLAWTTMIKGLAMHGRGSEALELFSQMERL 438
>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
Length = 802
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 230/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + Q GF + N LI MY +CG ++ A +F+ M +W+AMI L HG
Sbjct: 451 QLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHG 510
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F++M+ GI P+ ++F+ +L AC H G VDEG R+F SM ++GIIP +HY
Sbjct: 511 HGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHY 570
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
++DLL RAG + EA + I+ MP +P +W A+L GCR +++L A+ QL ++ P
Sbjct: 571 TRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTP 630
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++G +++LSN Y+ A W D ARVRKLMR+ GVKK PG S I VH F+ GD HP
Sbjct: 631 QHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHP 690
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+A ++++ E + M+ GY+P+T VVL D+E +KE L+ HSE+LA+ FGL+N PPG
Sbjct: 691 EAHEVYKFLEMVGAKMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLNLPPG 750
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ ++KNLR+C+DCHAA +S+ V REIVVRD RFH F+ G CSCG+YW
Sbjct: 751 ATVTVLKNLRICDDCHAAIMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 2/144 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NT++ YV+ CL+ A VF EM + +W M+ G G A++AL FNKM +K
Sbjct: 368 NTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVK 427
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P T+ G + ACG +G + G++ + + G ++ + +R G ++EA+
Sbjct: 428 PCDYTYAGAIAACGELGALKHGKQ-LHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHL 486
Query: 139 FIRNMPIKPNGVVWGALLGGCRVH 162
MP + V W A++ H
Sbjct: 487 MFLVMP-NIDSVSWNAMISALGQH 509
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 7/200 (3%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
T++ YV+ G + AR VF E++ + W+AMI G G A EA F +M+ +
Sbjct: 232 TTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVP 291
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMT-TEYGIIPQ--IEHYGCMVDLLSRAGFLQE 135
+ TF +L AC ++G G+ + + +P+ + +V S+ G +
Sbjct: 292 LDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAV 351
Query: 136 AYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAE 195
A NM +K + V W +L G +D A E ++ + L+ +V+ + Y
Sbjct: 352 ARRIFDNMTLK-DVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELS---WMVMVSGYVH 407
Query: 196 AERWEDVARVRKLMRNLGVK 215
ED ++ MR+ VK
Sbjct: 408 GGFAEDALKLFNKMRSENVK 427
>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 668
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 239/352 (67%), Gaps = 2/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + +SG + V NTL+ MY K G + A++VF + + V + ++M+ G A HG
Sbjct: 318 LHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGL 377
Query: 62 AKEALTSFNKMIE-IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
KEA+ F +M+ + I+PN +TF+ +L AC H G +DEG +++ + +YG+ P++ HY
Sbjct: 378 GKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGL-YYFELMKKYGLEPKLSHY 436
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+VDL RAG L +A FI MPI+PN +WGALLG ++HKN ++ A++++ +LDP
Sbjct: 437 TTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDP 496
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
G H +LSNIYA A +W+DVA+VRK M++ G+KK P S + ++ VH F A D +HP
Sbjct: 497 FYPGAHTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFSANDISHP 556
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q K+++MWE L +K GY+P+TS V + ++++EKE L HSEKLAL F L+NT PG
Sbjct: 557 QKNKVYEMWENLNQKIKEIGYVPDTSHVHVFVDQQEKELNLQYHSEKLALAFALLNTKPG 616
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ IRIMKN+RVC DCH+A K +S +V REI+VRD NRFH F+ GSCSC DYW
Sbjct: 617 SVIRIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFRDGSCSCRDYW 668
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 5/160 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + S FR ++ + N+++ MY KCG LE AR+VF EM + V TW++MI G + G
Sbjct: 113 VHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGY 172
Query: 62 AKEALTS---FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
A A T+ F +M+ G++PN L+ CG +G +G++ + +YG +
Sbjct: 173 ASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQ-IHGCCWKYGFQENVF 231
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ +R G L+E+ + K N V W AL+ G
Sbjct: 232 VGSSLVDMYARCGELRESRLVFDELESK-NEVSWNALISG 270
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 58/101 (57%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + GF+ N+ V ++L+DMY +CG L +R VF E+E + +W+A+I G A G
Sbjct: 216 QIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGFARKG 275
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR 101
+ +EAL F KM G T+ LL + G +++G+
Sbjct: 276 EGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGK 316
>gi|218200771|gb|EEC83198.1| hypothetical protein OsI_28453 [Oryza sativa Indica Group]
Length = 639
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 161/331 (48%), Positives = 224/331 (67%), Gaps = 1/331 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y + R + + L+DMY KCG ++ A VF M+E+ V W+ MI+GLA+HG+
Sbjct: 158 VHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGR 217
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL F++M +G+KP+ + FIG L AC H G VD+GR F SM +YGI P+IEHYG
Sbjct: 218 GSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYG 277
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL+R G L EA E + MP+KP+ ++WGAL+ GCR HKN++LAE + +L+P
Sbjct: 278 CMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPD 337
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+G +V+L NIYA + R +R LMR GV KTPG S++ + GV+H+F+ GD +HP
Sbjct: 338 KSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSHPF 397
Query: 242 AEKIFQMWEKLLDGMKL-KGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
E+I W+++ ++L +GY+P+ VLLDIEE+EKE L RHSEK+A+ F L+NT
Sbjct: 398 IEEILSKWDEIDSRIRLEEGYVPDKKEVLLDIEEEEKENALSRHSEKMAIAFALINTSDD 457
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIV 331
PIRI+KNLRVC DCH KLIS++ + +V
Sbjct: 458 MPIRIVKNLRVCHDCHHVTKLISKVFDLTVV 488
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 2/126 (1%)
Query: 53 IQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYG 112
+ G + G +EAL F +M G+ P+ +G+L AC +G +++G ++ +
Sbjct: 108 LAGFLLAGDGREALGLFARMQADGVIPDDTVLVGVLVACAQLGVLEQG-KWVHGYLKANN 166
Query: 113 IIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEAS 172
I + +VD+ ++ G +Q A E + M K N + W ++ G +H A E
Sbjct: 167 IRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEK-NVLAWTTMIKGLAMHGRGSEALELF 225
Query: 173 RQLDQL 178
Q+++L
Sbjct: 226 SQMERL 231
>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 698
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 163/352 (46%), Positives = 232/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ R+ V +TL+DMY KCG + + ++F E+E RT W+A+I A HG
Sbjct: 347 QLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHG 406
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ +F++MI GI+PN + F+ LL AC H G VDEG ++FYSM +GI P+ EHY
Sbjct: 407 HGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHY 466
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C++D RAG L EAY+FI MPIKPN W +LLG CR+ + +L E A++ L +L+P
Sbjct: 467 SCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEP 526
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G HV LS IYA +WEDV VRKLMR+ +KK PG+S + + H F + D +HP
Sbjct: 527 GNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHP 586
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q + I++ E+L +K +GYIP+TS + ++E+ KE+ L HSE++A+ F L++ P
Sbjct: 587 QQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERIAVAFALISMPAT 646
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PI + KNLR+C DCH AFK I ++ R+I+VRD +RFH F G CSCGDYW
Sbjct: 647 KPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 698
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 13/167 (7%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF + V + L DMY KCG L A RVF +M ++ W+AMI G A +G + A+ SF
Sbjct: 152 GFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSF 211
Query: 70 NKMIEIG-IKPNGVTFIGLLHACGHM--GWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126
M G + + F +L A G + GW+ + + T+ G ++ ++D+
Sbjct: 212 RDMKREGLVGADQHVFCSVLSASGGLKDGWLSKS---IHCCVTKAGFELEVAVRNALIDM 268
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNI--DLAEEA 171
+++ ++ A R + I P G W + G + I D EEA
Sbjct: 269 YAKSMDVESAS---RVLKIDPGG--WNVVSGTSMIDGYIETDCVEEA 310
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 3/156 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF-IEMEERTVFTWSAMIQGLAIHG 60
+H ++GF + V N LIDMY K +E A RV I+ V + ++MI G
Sbjct: 246 IHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETD 305
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL + ++ G++PN TF ++ C +++G + ++ + +I
Sbjct: 306 CVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQ-LHAQVIKTDLIRDSFVG 364
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
+VD+ + G + + + + + + + W A++
Sbjct: 365 STLVDMYGKCGLISLSMQLFNEIEYRTD-IAWNAVI 399
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 76/179 (42%), Gaps = 2/179 (1%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
+ N LI MY C L A R+F M R +W+ ++ GL+ + +AL +F M G
Sbjct: 58 LANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAG 117
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
+ P A +G G + + + G ++ + D+ S+ G L EA
Sbjct: 118 VAPTRFALSSAARAAAALGAPLPGAQ-LHCVGVRLGFDTELFVASNLADMYSKCGLLSEA 176
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAE 195
MP K + V W A++ G + +++ A + R + + + HV S + A
Sbjct: 177 CRVFDQMPQK-DAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSAS 234
>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
Length = 744
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 171/383 (44%), Positives = 240/383 (62%), Gaps = 31/383 (8%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G ++ V N L+D+Y KCG +E + +F E R TW+ +I G G
Sbjct: 362 QIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLG 421
Query: 61 QAKEALTSFNKMIE-------------------------------IGIKPNGVTFIGLLH 89
++AL F M+E + +KP+ +TF+G+L
Sbjct: 422 DGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKPDKLTFVGVLS 481
Query: 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNG 149
AC + G +D+G+ +F SM ++GI P IEHY CMV LL R G L +A + I +P +P+
Sbjct: 482 ACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSV 541
Query: 150 VVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLM 209
+VW ALLG C +H +I+L +++++ +++P + HV+LSN+YA A+RW++VA VRK M
Sbjct: 542 MVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNM 601
Query: 210 RNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVL 269
+ GVKK PG S I G VH F GD +HP+ I M E L K GYIPN +VVL
Sbjct: 602 KRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVL 661
Query: 270 LDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAAFKLISEIVNRE 329
LD+E++EKE+ L+ HSE+LAL+FG++ TP G+PIRIMKNLR+C DCHAA K IS++V RE
Sbjct: 662 LDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQRE 721
Query: 330 IVVRDRNRFHCFQAGSCSCGDYW 352
IVVRD NRFH FQ G CSCGDYW
Sbjct: 722 IVVRDINRFHHFQEGLCSCGDYW 744
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 5/172 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + +S + ++ V L+D+Y K G ++ ARR F E+ ++ V WS MI A Q
Sbjct: 262 VHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQ 321
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+KEA+ F +M + + PN TF +L AC M ++ G + + + G+ +
Sbjct: 322 SKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQ-IHCHVIKIGLHSDVFVSN 380
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR 173
++D+ ++ G ++ + E P + N V W ++ G H + E+A R
Sbjct: 381 ALMDVYAKCGRMENSMELFAESPHR-NDVTWNTVIVG---HVQLGDGEKALR 428
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 26/219 (11%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G N V LID Y CG ++ AR VF + + + +W+ M+ A +
Sbjct: 161 IHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDC 220
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-------YSMTTEYGII 114
KEAL F++M +G KPN TF + AC + D G+ Y + G+
Sbjct: 221 FKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGV- 279
Query: 115 PQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQ 174
++DL +++G + +A +P K + + W ++ + D ++EA
Sbjct: 280 -------ALLDLYTKSGDIDDARRAFEEIP-KKDVIPWSFMIAR---YAQSDQSKEAVEM 328
Query: 175 LDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213
Q+ +VL N + A + A + L NLG
Sbjct: 329 FFQMRQA-----LVLPNQFTFASVLQACATMEGL--NLG 360
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 101/274 (36%), Gaps = 52/274 (18%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N L++MYVK L A ++F EM ER ++ +IQG A + EA+ F ++ G +
Sbjct: 77 NILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHE 136
Query: 79 PNGVTFIGLLHA-----CGHMGW------------------------------VDEGRRF 103
N F +L CG +GW VD R
Sbjct: 137 LNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREV 196
Query: 104 FYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPI---KPNGVVWGALLGGCR 160
F + + + + MV + +EA + M + KPN + ++ C
Sbjct: 197 FDGI-----LYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACL 251
Query: 161 VHKNIDLAEEASR-QLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPG 219
+ D+ + L L+ V L ++Y ++ D+ R+ + K
Sbjct: 252 GLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKS---GDIDDARRAFEEIPKKDVIP 308
Query: 220 WSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLL 253
WS + + + D++ E FQM + L+
Sbjct: 309 WSFM-----IARYAQSDQSKEAVEMFFQMRQALV 337
>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Glycine max]
Length = 635
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 164/352 (46%), Positives = 229/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH+ + + +L+ MY KCG L+ A +FI++ + V W+AMI G A HG
Sbjct: 284 QVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHG 343
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
K+AL F++M + G+KP+ +TF+ +L AC H G VD G ++F +M ++GI + EHY
Sbjct: 344 AGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHY 403
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG L EA + I++MP KP+ ++G LLG CR+HKN++LAE A++ L +LDP
Sbjct: 404 ACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELDP 463
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+V L+N+YA RW+ VA +R+ M++ V K PG+S I ++ VVH F + D HP
Sbjct: 464 TIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEINSVVHGFRSSDRLHP 523
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ I + + L MKL GY+P+ VL D+ E+ KE+ L HSEKLA+ FGL+ P G
Sbjct: 524 ELASIHEKLKDLEKKMKLAGYVPDLEFVLHDVGEELKEQLLLWHSEKLAIAFGLLKVPLG 583
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLRVC DCH+A K IS I REI+VRD RFH F+ G CSC DYW
Sbjct: 584 VPIRVFKNLRVCGDCHSATKYISTIEGREIIVRDTTRFHHFKDGFCSCRDYW 635
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 88/166 (53%), Gaps = 5/166 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ +I Y+K G +E A R+F EM RT+ TW+AMI G +G+A++ L F M
Sbjct: 195 RSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTM 254
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+E G+KPN ++ +L C ++ + G++ + + + + +V + S+ G
Sbjct: 255 LETGVKPNALSLTSVLLGCSNLSALQLGKQ-VHQLVCKCPLSSDTTAGTSLVSMYSKCGD 313
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
L++A+E +P K + V W A++ G H ++A R D++
Sbjct: 314 LKDAWELFIQIPRK-DVVCWNAMISGYAQH---GAGKKALRLFDEM 355
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH-GQ 61
HE++N N+ N LI YV+CG ++ A RVF +M+ ++ TW++++ A G
Sbjct: 34 HEFNNN-----NVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGH 88
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ A F K+ + PN V++ +L H V + R FF SM + + +
Sbjct: 89 FEYARQLFEKIPQ----PNTVSYNIMLACHWHHLGVHDARGFFDSMP-----LKDVASWN 139
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
M+ L++ G + EA MP K N V W A++ G ++D A E
Sbjct: 140 TMISALAQVGLMGEARRLFSAMPEK-NCVSWSAMVSGYVACGDLDAAVE 187
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/255 (20%), Positives = 101/255 (39%), Gaps = 27/255 (10%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+++ NT+I + G + ARR+F M E+ +WSAM+ G G A+ F
Sbjct: 133 KDVASWNTMISALAQVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYAA 192
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ +T+ ++ G V+ R F M+ + + M+ G
Sbjct: 193 PMRSV----ITWTAMITGYMKFGRVELAERLFQEMSMRTLVT-----WNAMIAGYVENGR 243
Query: 133 LQEAYEFIRNM---PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
++ R M +KPN + ++L GC + L ++ QL PL++
Sbjct: 244 AEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQV-HQLVCKCPLSSDT-TAG 301
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
+++ + + D+ +L + K W+++ ++G H +K
Sbjct: 302 TSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAM---------ISGYAQHGAGKKAL--- 349
Query: 250 EKLLDGMKLKGYIPN 264
+L D MK +G P+
Sbjct: 350 -RLFDEMKKEGLKPD 363
>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 694
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 166/349 (47%), Positives = 233/349 (66%), Gaps = 1/349 (0%)
Query: 4 EYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAK 63
EY ++S +R ++ + + LIDM+ KCG +E AR VF +R V WSAMI G +HGQA+
Sbjct: 347 EYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAR 406
Query: 64 EALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCM 123
EA++ + M G+ PN VTF+GLL AC H G V EG FF M ++ I PQ +HY C+
Sbjct: 407 EAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMA-DHKINPQQQHYACI 465
Query: 124 VDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183
+DLL RAG L +AYE I+ MP++P VWGALL C+ H++++L + A++QL +DP N
Sbjct: 466 IDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSNT 525
Query: 184 GYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAE 243
G++V LSN+YA A W+ VA VR M+ G+ K G S + V G + F GD++HP+ E
Sbjct: 526 GHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEGFRVGDKSHPRYE 585
Query: 244 KIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPI 303
+I + E + +K G++ N L D+ ++E E+ L HSE++ + +GL++TP GT +
Sbjct: 586 EIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERITIAYGLISTPQGTTL 645
Query: 304 RIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
RI KNLR C +CHAA KLIS++V REIVVRD NRFH F+ G CSCGDYW
Sbjct: 646 RITKNLRACVNCHAATKLISKLVGREIVVRDTNRFHHFKDGVCSCGDYW 694
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 85/159 (53%), Gaps = 4/159 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIH 59
VH + GF ++ V N LI +Y KC L AR VF + + ERT+ +W+A++ A +
Sbjct: 141 VHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQN 200
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G+ EAL F++M ++ +KP+ V + +L+A + +++GR S+ + G+ + +
Sbjct: 201 GEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASV-MKMGLETEPDL 259
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ + ++ G + A M PN ++W A++ G
Sbjct: 260 LISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAMISG 297
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 14/167 (8%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G + +L MY KCG + A+ +F +M+ + W+AMI G A +G
Sbjct: 244 IHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGF 303
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMG------WVDEGRRFFYSMTTEYGIIP 115
AK+A+ F++MI ++P+ ++ + AC +G W+DE Y ++Y
Sbjct: 304 AKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDE-----YVSRSDYR--D 356
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ ++D+ ++ G + E + + + + VVW A++ G +H
Sbjct: 357 DVFISSALIDMFAKCGSV-ECARSVFDRTLDRDVVVWSAMIVGYGLH 402
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 2/139 (1%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
LI G + AR+VF ++ VF W+A+I+G + + ++AL ++KM + P+
Sbjct: 59 LIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPD 118
Query: 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFI 140
TF LL ACG + + G RF ++ G + ++ L ++ L A
Sbjct: 119 SFTFPHLLKACGGLSHLQMG-RFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVF 177
Query: 141 RNMPIKPNGVV-WGALLGG 158
+P+ +V W A++
Sbjct: 178 EGLPLPERTIVSWTAIVSA 196
>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 666
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 163/354 (46%), Positives = 233/354 (65%), Gaps = 2/354 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + +SG + + N+LIDMY KCG + ARR+F M ERT +W+AM+ G + HG
Sbjct: 313 QVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHG 372
Query: 61 QAKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTT-EYGIIPQIE 118
A+E L F M E +KP+ +T++ +L C H D G FY+M + GI P I
Sbjct: 373 MAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIG 432
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
HYGC+VDLL RAG ++EA++FI+ MP P +WG+LLG CRVH ++++ ++L +L
Sbjct: 433 HYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLEL 492
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
+P N G +V+LSN+YA A +WED+ +R LM+ V K PG S + +D +VH F A D T
Sbjct: 493 EPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHT 552
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
HP+ E++ + ++L K GY+P+ S VL D++E++KEK L HSEKLAL FGL+ TP
Sbjct: 553 HPRREEVAKKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATP 612
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GT IR++KNLR+C DCH+ K +S + R +++RD+NRFH G CSCGDYW
Sbjct: 613 EGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 666
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 93/179 (51%), Gaps = 7/179 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH + ++ + ++ + LI +Y KC CL AR +F EM ++ V +W+AMI + G
Sbjct: 111 RVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRG 170
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHAC-GHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
A EAL F +M+ +PN TF +L +C G +G+ E R +S+ + +
Sbjct: 171 FAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGF--ETGRQIHSIAIKRNYESHMFV 228
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++D+ +++G + +A+ +P + + V A++ G + + L EEA + QL
Sbjct: 229 GSSLLDMYAKSGRICDAHGVFHCLP-ERDVVACTAIISG---YAQMGLDEEALKLFRQL 283
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 93/193 (48%), Gaps = 5/193 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + + ++ V ++L+DMY K G + A VF + ER V +A+I G A G
Sbjct: 212 QIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMG 271
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F ++ G+ N VT+ +L A + ++ G++ +S G +
Sbjct: 272 LDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQ-VHSHVLRSGQYSYVVLL 330
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH---KNIDLAEEASRQLDQ 177
++D+ S+ G + A +MP + + W A+L G H + + + R+ ++
Sbjct: 331 NSLIDMYSKCGNVCYARRIFDSMP-ERTCISWNAMLVGYSKHGMAREVLELFKLMREENK 389
Query: 178 LDPLNNGYHVVLS 190
+ P + Y VLS
Sbjct: 390 VKPDSITYLAVLS 402
>gi|357467379|ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355493022|gb|AES74225.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 566
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 167/354 (47%), Positives = 229/354 (64%), Gaps = 2/354 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + G VC LI MY KCGCLE AR VF ++ +R VF W+AMI GLA HG
Sbjct: 213 KVHGIVKEKGIDFKANVCTALIHMYSKCGCLESAREVFDDVLDRDVFVWTAMIYGLACHG 272
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
KEA+ F +M +KP+ T + +L A + G V EG FF + Y + P I+H+
Sbjct: 273 MCKEAIELFLEMETCNVKPDERTIMVVLSAYRNAGLVREGYMFFNDVQKRYSMKPNIKHF 332
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ--L 178
GCMVDLL++ G L+EA +FI MP+KP+ V+W L+ C+VH + + AE + L+ +
Sbjct: 333 GCMVDLLAKGGCLEEAEDFINAMPMKPDAVIWRTLIWACKVHADTERAERLMKHLELQGM 392
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
++G +++ SN+YA +W D A VR+LM G+ K PG S I VDGVVHEFV GD
Sbjct: 393 SAHDSGSYILASNVYASTGKWCDKAEVRELMNKKGLVKPPGSSRIEVDGVVHEFVMGDYD 452
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
HP EKIF ++++D ++ +GY P S V+L+++++EK L HSEKLAL +GL+ T
Sbjct: 453 HPDTEKIFIKLDQMVDKLRKEGYNPKVSEVMLEMDDEEKAIQLLHHSEKLALAYGLIRTC 512
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PG+ IRI+KNLR CEDCH KLIS++ R+I+VRDR RFH F+ G CSC DYW
Sbjct: 513 PGSKIRIVKNLRSCEDCHEFMKLISKVYQRDIIVRDRIRFHHFKNGDCSCKDYW 566
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + N+ GF ++ + N LI MY + G L AR+VF M R V +W++MI G H
Sbjct: 112 QLHGFINKMGFGFDLYIQNALIHMYSEIGELVIARQVFDRMSHRDVVSWTSMIAGFVNHH 171
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA+ F +M+E+G+ N T I +L C G + GR+ + + E GI +
Sbjct: 172 LTVEAIQLFQRMLEVGVDVNEATVISVLRGCADSGALSVGRK-VHGIVKEKGIDFKANVC 230
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++ + S+ G L+ A E ++ + + VW A++ G H
Sbjct: 231 TALIHMYSKCGCLESAREVFDDV-LDRDVFVWTAMIYGLACH 271
>gi|115473893|ref|NP_001060545.1| Os07g0662700 [Oryza sativa Japonica Group]
gi|24414187|dbj|BAC22429.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113612081|dbj|BAF22459.1| Os07g0662700 [Oryza sativa Japonica Group]
gi|125559498|gb|EAZ05034.1| hypothetical protein OsI_27217 [Oryza sativa Indica Group]
gi|125601406|gb|EAZ40982.1| hypothetical protein OsJ_25464 [Oryza sativa Japonica Group]
Length = 544
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 165/335 (49%), Positives = 229/335 (68%), Gaps = 4/335 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM-IEIGI 77
L+DMY KCG +E A VF ++ R TW+AMI GLA++G + +AL F KM ++ +
Sbjct: 213 TALLDMYAKCGAVELALDVFTKLRSRNTCTWNAMINGLAMNGYSAKALDMFRKMELDRTV 272
Query: 78 KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAY 137
P+ VTF+G+L AC H G+VD GR F+ + +YGI +EHY CMVDLL+R+G LQEA+
Sbjct: 273 VPDEVTFVGVLLACSHGGFVDVGREHFHMIEKKYGIRLILEHYACMVDLLARSGHLQEAH 332
Query: 138 EFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAE 197
+ I MP+KP+ VVW ALLGGCR+HK++ +AE A + +++ +G HV+LSN+YA
Sbjct: 333 KIIAGMPMKPDAVVWRALLGGCRLHKDVKMAETA---ISEMEATCSGDHVLLSNLYAAVG 389
Query: 198 RWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMK 257
RW V VR+ MR+ G++K PG SSI ++ +HEFV+GD++HP I ++ M+
Sbjct: 390 RWSGVEDVRRTMRSKGIEKIPGCSSIEINDSIHEFVSGDKSHPSYNDIHAKLAEISARMQ 449
Query: 258 LKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHA 317
+GY+ T+ V D+EE+EKE+ L HSEKLA+ FGL+ PP IRI+KNLR C DCH
Sbjct: 450 QQGYVTETAEVFYDVEEEEKEQALGHHSEKLAIAFGLIGGPPNVAIRIVKNLRFCADCHK 509
Query: 318 AFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
KL+S+I + EIVVRDR RFH F G+CSC D+W
Sbjct: 510 FAKLVSQIYHWEIVVRDRARFHHFTEGACSCNDFW 544
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 71/142 (50%), Gaps = 4/142 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
+++ + G + ARR+F EM R + +W+AM+ GLA + + EAL F +M+ G
Sbjct: 110 TSMVAGLCRAGDVAAARRLFEEMPVRDLVSWNAMMSGLAGNRRPVEALCLFRRMMAEGFA 169
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY--GCMVDLLSRAGFLQEA 136
PN T + L AC G ++ G ++ ++ + + + ++D+ ++ G ++ A
Sbjct: 170 PNRGTVLSALAACAGAGALETG-KWIHAFVERKRLFRWWDEFLGTALLDMYAKCGAVELA 228
Query: 137 YEFIRNMPIKPNGVVWGALLGG 158
+ + + N W A++ G
Sbjct: 229 LDVFTKLRSR-NTCTWNAMING 249
>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
Length = 617
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 163/352 (46%), Positives = 232/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ R+ V +TL+DMY KCG + + ++F E+E RT W+A+I A HG
Sbjct: 266 QLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHG 325
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ +F++MI GI+PN + F+ LL AC H G VDEG ++FYSM +GI P+ EHY
Sbjct: 326 HGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHY 385
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C++D RAG L EAY+FI MPIKPN W +LLG CR+ + +L E A++ L +L+P
Sbjct: 386 SCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEP 445
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G HV LS IYA +WEDV VRKLMR+ +KK PG+S + + H F + D +HP
Sbjct: 446 GNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHP 505
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q + I++ E+L +K +GYIP+TS + ++E+ KE+ L HSE++A+ F L++ P
Sbjct: 506 QQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERIAVAFALISMPAT 565
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PI + KNLR+C DCH AFK I ++ R+I+VRD +RFH F G CSCGDYW
Sbjct: 566 KPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 617
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 13/167 (7%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF + V + L DMY KCG L A RVF +M ++ W+AMI G A +G + A+ SF
Sbjct: 71 GFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSF 130
Query: 70 NKMIEIG-IKPNGVTFIGLLHACGHM--GWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126
M G + + F +L A G + GW+ + + T+ G ++ ++D+
Sbjct: 131 RDMKREGLVGADQHVFCSVLSASGGLKDGWLSKS---IHCCVTKAGFELEVAVRNALIDM 187
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNI--DLAEEA 171
+++ ++ A R + I P G W + G + I D EEA
Sbjct: 188 YAKSMDVESAS---RVLKIDPGG--WNVVSGTSMIDGYIETDCVEEA 229
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 3/156 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF-IEMEERTVFTWSAMIQGLAIHG 60
+H ++GF + V N LIDMY K +E A RV I+ V + ++MI G
Sbjct: 165 IHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETD 224
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL + ++ G++PN TF ++ C +++G + ++ + +I
Sbjct: 225 CVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQ-LHAQVIKTDLIRDSFVG 283
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
+VD+ + G + + + + + + + W A++
Sbjct: 284 STLVDMYGKCGLISLSMQLFNEIEYRTD-IAWNAVI 318
>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
Length = 607
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 168/345 (48%), Positives = 233/345 (67%), Gaps = 4/345 (1%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
R ++ V N+L+DMY KCG L+ A ++F M++ V +W++MI G A+HG+ + AL F +
Sbjct: 263 RDHVLVNNSLLDMYCKCGSLDIATQIFEGMQKHDVTSWNSMILGFAMHGKGELALECFER 322
Query: 72 MIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
MI I PN +TF+G+L AC H V+EGR++F M EY I PQ+EHYGC+VD+L+RA
Sbjct: 323 MIRISRFVPNSITFVGVLSACNHRYMVNEGRKYFDMMVNEYKIEPQLEHYGCLVDILARA 382
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGC-RVHKNIDLAEEASRQ-LDQLDPLNNGYHVV 188
G + EA E + +MP+KP+ V+W +LL C + + +++L+E +RQ L+ + ++G +V+
Sbjct: 383 GLIDEALELVASMPMKPDVVIWRSLLDSCCKKNASVELSENIARQILESEEADSSGVYVL 442
Query: 189 LSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQM 248
LS +YA A RW DV VRKLM N G+ K PG S I VDGV HEF AGD +HPQ ++I+Q+
Sbjct: 443 LSRVYASASRWNDVGLVRKLMTNNGILKEPGCSLIEVDGVTHEFFAGDTSHPQTKEIYQV 502
Query: 249 WEKLLDGMKLKGYIPNTS-VVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMK 307
+ + + GY P+ S ++D K L HSE+LA+ GL+N PG PIRI K
Sbjct: 503 LNVVEERIDSTGYKPDYSQAPMVDELNTSKRDSLRLHSERLAIALGLLNLKPGMPIRIFK 562
Query: 308 NLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
NLRVC+DCH LISEI N EI+VRDR RFH F+ GSCSC DYW
Sbjct: 563 NLRVCDDCHKVTGLISEIFNVEIIVRDRVRFHHFKDGSCSCMDYW 607
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 85/173 (49%), Gaps = 4/173 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H + + GF+ ++ + N+LI Y CG LE A+ VF +M +R++ +W+AMI + G
Sbjct: 147 QAHAHLLKLGFQSDVYINNSLIHFYASCGSLESAKNVFDKMPQRSLVSWNAMIDAFVLFG 206
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ + AL F + + +P+G T +++AC + + G + G+ +H
Sbjct: 207 EFETALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGMWAHAFLLRNCGVSVARDHV 266
Query: 121 ---GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
++D+ + G L A + M K + W +++ G +H +LA E
Sbjct: 267 LVNNSLLDMYCKCGSLDIATQIFEGMQ-KHDVTSWNSMILGFAMHGKGELALE 318
>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
Length = 652
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 232/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + GF ++ V N L++ Y +CG L A+ VF M R V +WS+MI A G
Sbjct: 301 KIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRG 360
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EA+ +++M+ G P+ + FI +L AC + G V+ FF S+ + + P +EHY
Sbjct: 361 RVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHY 420
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVD+L RAG L++A + +R MP P +++ +L C+++ +++ E A+ + +LDP
Sbjct: 421 ACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDP 480
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+ ++ L+NIY+ A+R +D AR+RKLM G+KK PG S I V VHEF+AGD+ HP
Sbjct: 481 ENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGDKMHP 540
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q ++I+ ++L MK GY +T VVL D+EE EKE L+ HSEKLA+ FGL++TPPG
Sbjct: 541 QRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAFGLISTPPG 600
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P+RI+KNLRVC DCHAA K+IS++ REI+VRD NRFH FQ G CSC DYW
Sbjct: 601 APLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFQNGMCSCNDYW 652
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 7/163 (4%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ ++ Y G L R +F M ER + +W+ M+ L + +E+ F++M
Sbjct: 207 RDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLISWATMVAALVENDLLEESKELFDRM 266
Query: 73 -----IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
+ G+ PN VTFI LL AC +G + EGR+ ++ E G + +V+
Sbjct: 267 PRHCALSKGMTPNRVTFITLLDACSFLGALAEGRK-IHAAVAERGFDTDLVVSNALVNFY 325
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
R G L +A M + + + W +++ +D A E
Sbjct: 326 GRCGALGDAKIVFDGMR-RRDVISWSSMISAFAQRGRVDEAME 367
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 17/155 (10%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ +L+ Y + G ++ A RVF M E + W+AM+ G ++ G A +F+ M
Sbjct: 145 RNLFSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLVAWTAMLTGYSLSGDVVRAKRAFDSM 204
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E + + + +L A G + R F M E +I + MV L
Sbjct: 205 PERDL----IAWTAMLSAYAFNGHLRYTREIFQRM-PERDLI----SWATMVAALVENDL 255
Query: 133 LQEAYEFIRNMP--------IKPNGVVWGALLGGC 159
L+E+ E MP + PN V + LL C
Sbjct: 256 LEESKELFDRMPRHCALSKGMTPNRVTFITLLDAC 290
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 102/254 (40%), Gaps = 16/254 (6%)
Query: 24 MYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVT 83
M+ + GC+E AR++F + +R F+W M+ A G A F++M + +
Sbjct: 1 MFGRLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLG----S 56
Query: 84 FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM 143
+ LL A G +E + F +M E +I + M+ +L+ +++A M
Sbjct: 57 WTALLSAFALSGHHEEAKTLFDTM-QERDLIA----WTIMLTVLATFSNIEDAKYHFDQM 111
Query: 144 PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVA 203
P + + V W A+L + E A DQ+ N L + Y + +
Sbjct: 112 PER-DLVAWTAMLAANAERGQM---ENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAG 167
Query: 204 RVRKLMRNLG-VKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYI 262
RV M V T + ++ G V ++ P+ + I W +L G++
Sbjct: 168 RVFDSMPEWNLVAWTAMLTGYSLSGDVVRAKRAFDSMPERDLI--AWTAMLSAYAFNGHL 225
Query: 263 PNTSVVLLDIEEKE 276
T + + E++
Sbjct: 226 RYTREIFQRMPERD 239
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 15/184 (8%)
Query: 1 RVHEYSNQSGF-----RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQG 55
R + SN G R ++ L+ + G E A+ +F M+ER + W+ M+
Sbjct: 35 RSGDLSNAKGVFDRMPRWSLGSWTALLSAFALSGHHEEAKTLFDTMQERDLIAWTIMLTV 94
Query: 56 LAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP 115
LA ++A F++M E + V + +L A G ++ R F M
Sbjct: 95 LATFSNIEDAKYHFDQMPERDL----VAWTAMLAANAERGQMENARETFDQMPER----- 145
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
+ + ++ R+G ++ A +MP + N V W A+L G + ++ A+ A +
Sbjct: 146 NLFSWTSLLSAYGRSGDVKAAGRVFDSMP-EWNLVAWTAMLTGYSLSGDVVRAKRAFDSM 204
Query: 176 DQLD 179
+ D
Sbjct: 205 PERD 208
>gi|224074129|ref|XP_002304264.1| predicted protein [Populus trichocarpa]
gi|222841696|gb|EEE79243.1| predicted protein [Populus trichocarpa]
Length = 499
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 154/352 (43%), Positives = 231/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + G+ +CN+LI MY + G L+ A VF M + V TWSA+I GLA++G
Sbjct: 148 KVHGHIVERGYDNATNLCNSLIAMYSQFGNLDKAFGVFKGMHNKNVVTWSAIISGLAMNG 207
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ +F +M+++G+ P+ +TF G+L AC + G VD+G F M+ E+GI+P I HY
Sbjct: 208 YGREAIGAFEEMLKMGVLPDDLTFTGVLSACSNCGLVDKGMIIFARMSKEFGIVPNIHHY 267
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDLL RAG L +AY+ I +M +KP+ +W LLG CR+H+N+ L E L +L
Sbjct: 268 GCMVDLLGRAGQLHQAYQLIMSMRVKPDSTIWRTLLGACRIHRNVILGEHVVEHLIELKA 327
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
G +V+L N+Y+ + W+ V +RK M+ G++ TP SSI + G VHEFV D +HP
Sbjct: 328 QEAGDYVLLFNLYSSVDNWKKVTELRKFMKEKGIQTTPASSSIELKGKVHEFVVDDVSHP 387
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q ++I++M +++ +K+ GY+ + L +++ +EK L HSEKLA+ FG++ TPPG
Sbjct: 388 QKDEIYEMLDEISKQLKIAGYVAEITSELPNLDAEEKRYVLSYHSEKLAIAFGVLATPPG 447
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IRI KNLR+C DCH K++S + NR++++ D RFH F+ G CSC DYW
Sbjct: 448 TTIRIAKNLRICVDCHNFAKILSGVYNRQVIITDHTRFHHFRGGHCSCNDYW 499
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 4/160 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH G + + + L+D+Y C A +VF EM +R W+ +I +
Sbjct: 45 QVHARILSDGHQSDSLLLTNLMDLYSLCDKGSEACKVFDEMRQRDTIAWNVLISCYMRNR 104
Query: 61 QAKEALTSFNKMI--EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+ ++ L F+ M+ E+G +P+ VT + LL AC ++G ++ G + + E G
Sbjct: 105 RTRDVLVIFDGMLSGELGCEPDDVTCLLLLQACANLGALEFGEK-VHGHIVERGYDNATN 163
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + S+ G L +A+ + M K N V W A++ G
Sbjct: 164 LCNSLIAMYSQFGNLDKAFGVFKGMHNK-NVVTWSAIISG 202
>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
mitochondrial-like [Cucumis sativus]
Length = 610
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 160/344 (46%), Positives = 220/344 (63%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
+GF I + L+D Y K G L + VF E+ W+AM+ G A HG +EA+
Sbjct: 267 TGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKL 326
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
F M G++P+ VTF LL AC H G V+EG+ +F M+ YGI P+++HY CMVDLL
Sbjct: 327 FESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLG 386
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVV 188
R G L +AYE I+NMP++PN VWGALLG CRVH NI+L +E + L ++PL+ +++
Sbjct: 387 RCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIM 446
Query: 189 LSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQM 248
LSN+Y+ + W+D A+VR L++ G+K+TPG+SSI H F GD +HP+ EKI+
Sbjct: 447 LSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSK 506
Query: 249 WEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKN 308
E+LL ++ GY T VL D+EE+ KE + +HSEKLA+ FGL+ + G + I KN
Sbjct: 507 LEELLGKIRKAGYSSKTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKN 566
Query: 309 LRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
LR+C DCH+ KLIS I R I++RD RFH F G CSC DYW
Sbjct: 567 LRICGDCHSTAKLISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 2/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G ++V N+LI+MY K G L A R+F + + +W+++I +G
Sbjct: 159 IHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGC 218
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+E + FNKM +GI+ + T + LL AC H+G V + + + G +I
Sbjct: 219 AREGIDYFNKMRRLGIEQDEGTILALLQACLHLG-VGKLAESIHGLMFCTGFGAKITIAT 277
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D ++ G L +Y + + V W A+L G H
Sbjct: 278 ALLDTYAKLGRLSASYGVFTEVGF-ADRVAWTAMLAGYAAH 317
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 81/160 (50%), Gaps = 11/160 (6%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLA--IH 59
+H +S R+ + + L+ Y K G E A ++F +M + + +W+++I G + +H
Sbjct: 61 IHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRCLH 120
Query: 60 GQAKEALTSFNKM-IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+LT+F M E+ +KPN VT + ++ AC G +D G ++ + + G +++
Sbjct: 121 ----MSLTAFYTMKFEMSVKPNEVTILSMISACS--GALDAG-KYIHGFGIKVGGTLEVK 173
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++++ ++G L A +P PN V W +++
Sbjct: 174 VANSLINMYGKSGDLTSACRLFEAIP-DPNTVSWNSIIAA 212
>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
Length = 679
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 165/331 (49%), Positives = 230/331 (69%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y +S F N+ + + L+DMY KCG + AR +F +ME + +W+AMI G A+HG
Sbjct: 318 QLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHG 377
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A +A++ F +M G+KPN V F+ +L AC H G VDE ++F SMT +Y IIP +EHY
Sbjct: 378 HAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHY 437
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+ DLL R G L+EAYEFI +M I+P G VW LL CRVHKNI+LAE+ S++L +DP
Sbjct: 438 AAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDP 497
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +V+LSNIY+ A RW+D ++R MR+ G+KK P S I + VH FVAGD++HP
Sbjct: 498 QNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHP 557
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++I + + LL+ M+ +GY+ +T+ VL D+EE++K L HSE+LA+TFG+++TP G
Sbjct: 558 YYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAG 617
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIV 331
T IR+ KNLRVC DCH A K IS+IV REIV
Sbjct: 618 TTIRVTKNLRVCVDCHTATKFISKIVGREIV 648
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 86/162 (53%), Gaps = 4/162 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ ++G+ ++ + ++LIDMY KC ++ + RVF + + +W+++I G +G
Sbjct: 218 IHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGM 277
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHY 120
E L F +M+ IKPN V+F ++ AC H+ + G++ Y + + + +
Sbjct: 278 FDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFD--GNVFIA 335
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ ++ G ++ A M + + V W A++ G +H
Sbjct: 336 SALVDMYAKCGNIRTARWIFDKMELY-DMVSWTAMIMGYALH 376
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90
L R+VF M +R + +W+ +I G A +G ++AL +M ++P+ T +L
Sbjct: 146 LGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPI 205
Query: 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGV 150
+ +G+ + G + ++D+ ++ + ++ +P + +G+
Sbjct: 206 FAEYVNLLKGKE-IHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLP-QHDGI 263
Query: 151 VWGALLGGC 159
W +++ GC
Sbjct: 264 SWNSIIAGC 272
>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
mitochondrial-like [Cucumis sativus]
Length = 610
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 160/344 (46%), Positives = 220/344 (63%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
+GF I + L+D Y K G L + VF E+ W+AM+ G A HG +EA+
Sbjct: 267 TGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKL 326
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
F M G++P+ VTF LL AC H G V+EG+ +F M+ YGI P+++HY CMVDLL
Sbjct: 327 FESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLG 386
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVV 188
R G L +AYE I+NMP++PN VWGALLG CRVH NI+L +E + L ++PL+ +++
Sbjct: 387 RCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIM 446
Query: 189 LSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQM 248
LSN+Y+ + W+D A+VR L++ G+K+TPG+SSI H F GD +HP+ EKI+
Sbjct: 447 LSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSK 506
Query: 249 WEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKN 308
E+LL ++ GY T VL D+EE+ KE + +HSEKLA+ FGL+ + G + I KN
Sbjct: 507 LEELLGKIRKAGYSSKTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKN 566
Query: 309 LRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
LR+C DCH+ KLIS I R I++RD RFH F G CSC DYW
Sbjct: 567 LRICGDCHSTAKLISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 2/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G ++V N+LI+MY K G L A R+F + + +W+++I +G
Sbjct: 159 IHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGC 218
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+E + FNKM +GI+ + T + LL AC H+G V + + + G +I
Sbjct: 219 AREGIDYFNKMRRLGIEQDEGTILALLQACLHLG-VGKLAESIHGLMFCTGFGAKITIAT 277
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D ++ G L +Y + + V W A+L G H
Sbjct: 278 ALLDTYAKLGRLSASYGVFTEVGF-ADRVAWTAMLAGYAAH 317
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 81/160 (50%), Gaps = 11/160 (6%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLA--IH 59
+H +S R+ + + L+ Y K G E A ++F +M + + +W+++I G + +H
Sbjct: 61 IHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRCLH 120
Query: 60 GQAKEALTSFNKM-IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+LT+F M E+ +KPN VT + ++ AC G +D G ++ + + G +++
Sbjct: 121 ----MSLTAFYTMKFEMSVKPNEVTILSMISACN--GALDAG-KYIHGFGIKVGGTLEVK 173
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++++ ++G L A +P PN V W +++
Sbjct: 174 VANSLINMYGKSGDLTSACRLFEAIP-DPNTVSWNSIIAA 212
>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 638
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 158/346 (45%), Positives = 233/346 (67%)
Query: 7 NQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEAL 66
++SGF NI V ++LIDMY KCG +E + +VF ++E+R V W+AMI GL+ H ++ E +
Sbjct: 293 SKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVM 352
Query: 67 TSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126
F KM ++G+ PN VTF+ +L ACGHMG V +G+++F MT E+ + P + HY CMVD
Sbjct: 353 ILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDT 412
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYH 186
LSRAG + EAY+ I +P + +WG+LL CR H N++LAE A+++L ++P N+G +
Sbjct: 413 LSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNY 472
Query: 187 VVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIF 246
++LSN+YA +W++VA++RKL++ VKK G S I + VH F+ G+ HP+ +I+
Sbjct: 473 LLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIY 532
Query: 247 QMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIM 306
+++D ++ GY T L + E K++ L HSEKLA T GL+ PP PIRIM
Sbjct: 533 SKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIM 592
Query: 307 KNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
KNLR+C DCH+ KL S+ R+++VRD NRFH F+ G CSCGD+W
Sbjct: 593 KNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 87/161 (54%), Gaps = 2/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ ++ N+ V L+D+Y KCG ++ A VF M +R+V TWS+M G +
Sbjct: 187 LHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEM 246
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL F K E G+K + ++ AC + + EG++ ++ ++ G I
Sbjct: 247 YEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQ-MNALLSKSGFCSNIFVAS 305
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++ G ++E+Y+ R++ K N V+W A++ G H
Sbjct: 306 SLIDMYAKCGGIEESYKVFRDVE-KRNVVLWNAMISGLSRH 345
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 2/149 (1%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G + ++ N LI+MY KCG ++ AR+VF EM R++ +W+ MI L +G+ EAL
Sbjct: 94 GLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLL 153
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+M G + T +L AC + E + ++ + + + ++D+ ++
Sbjct: 154 LQMQREGTPFSEFTISSVLCACAAKCALSEC-QLLHAFAIKAAMDLNVFVATALLDVYAK 212
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
G +++A +MP + + V W ++ G
Sbjct: 213 CGLMKDAVCVFESMPDR-SVVTWSSMAAG 240
>gi|224122234|ref|XP_002318784.1| predicted protein [Populus trichocarpa]
gi|222859457|gb|EEE97004.1| predicted protein [Populus trichocarpa]
Length = 511
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 162/351 (46%), Positives = 228/351 (64%), Gaps = 3/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VHE + N + + LIDMY KCG ++ A+ +F ++ V W+AMI GLA+HG
Sbjct: 164 VHELLIEKRIELNFILSSALIDMYSKCGKIQTAKEIFDGVQRNNVCIWNAMISGLAVHGL 223
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A +A+ F KM + P+ +TF+G+L AC H G V EGR++F M + Y + P IEHYG
Sbjct: 224 ALDAIKVFTKMEVENVLPDAITFLGILTACSHCGLVKEGRKYFDLMRSRYSVQPHIEHYG 283
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
MVDLL RAG L+EA+ I++MP++P+ V+W ALLG CR +K +L E A + + L
Sbjct: 284 AMVDLLGRAGLLEEAFAMIKSMPMEPDVVIWRALLGACRTYKKPELGEAA---MANISRL 340
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+G +V+LSNIY +RW+ V ++M+ GV K G S G +H F AGD +HP+
Sbjct: 341 RSGDYVLLSNIYCSQKRWDTAQGVWEMMKKKGVHKVRGKSCFEWAGFLHPFKAGDRSHPE 400
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E I++M E L+ KL GY+P T +V +D+ E+EKE LY HSEKLAL +G++ T G
Sbjct: 401 TEAIYKMLEGLIQRTKLAGYVPTTDLVTMDVSEEEKEGNLYHHSEKLALAYGILKTTSGA 460
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+RI KNLR+C DCH+ K++S +++R I+VRDR RFH F+ G CSCGDYW
Sbjct: 461 EVRISKNLRICYDCHSWIKIVSRLLSRVIIVRDRIRFHRFENGLCSCGDYW 511
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 78/164 (47%), Gaps = 5/164 (3%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N +ID ++ A+ VF +M R V TW+ MI G + +EAL F M + ++
Sbjct: 80 NLIIDKLMRTENYRVAKMVFNKMRARDVVTWNTMIGGYVRKARFEEALRLFRFMNKSNVE 139
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ TF +++ C +G + ++ + + E I ++D+ S+ G +Q A E
Sbjct: 140 PDKYTFASVINGCAKLGALKHA-QWVHELLIEKRIELNFILSSALIDMYSKCGKIQTAKE 198
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182
+ + N +W A++ G VH LA +A + +++ N
Sbjct: 199 IFDGVQ-RNNVCIWNAMISGLAVH---GLALDAIKVFTKMEVEN 238
>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 760
Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 159/351 (45%), Positives = 239/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H ++ + ++ V + LIDMY KCG ++ ++ VF M + + W++++ G ++HG+
Sbjct: 410 THGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGK 469
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AKE ++ F ++ +KP+ ++F LL ACG +G DEG ++F M+ EYGI P++EHY
Sbjct: 470 AKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYS 529
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMV+LL RAG LQEAY+ I+ +P +P+ VWGALL CR+ N+DLAE A+++L L+P
Sbjct: 530 CMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPE 589
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V++SNIYA W +V +R M +LG+KK PG S I V V+ +A D++HPQ
Sbjct: 590 NPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNKVYTLLACDKSHPQ 649
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I + +++ + M+ G+ PN L D+EE+E+E+ L+ HSEKLA+ FGL+NTP GT
Sbjct: 650 IDQITEKMDEISEEMRKSGHRPNLDFALQDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGT 709
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P++++KNLR+C DCHA K IS REI +RD NRFH F+ G CSCGD+W
Sbjct: 710 PLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 86/197 (43%), Gaps = 37/197 (18%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME------------------ 42
++H Y + G ++ V + ++DMY K G + G ++F E E
Sbjct: 273 QIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNG 332
Query: 43 -----------------ERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFI 85
E V +W+++I G A +G+ EAL F +M G+KPN VT
Sbjct: 333 LVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIP 392
Query: 86 GLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPI 145
+L ACG++ + GR + ++ + ++D+ ++ G ++ + MP
Sbjct: 393 SMLPACGNIAALGHGRS-THGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPT 451
Query: 146 KPNGVVWGALLGGCRVH 162
K N V W +L+ G +H
Sbjct: 452 K-NLVCWNSLMNGYSMH 467
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 57/107 (53%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + SG + V +L MY++CG + AR+VF M E+ V T SA++ G A G
Sbjct: 137 QIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKG 196
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM 107
+E + ++M + GI+PN V++ G+L G+ E F M
Sbjct: 197 CLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKM 243
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 78/184 (42%), Gaps = 37/184 (20%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEME----ERTVFTWSAMIQGLAIHGQAKEALTS 68
+++ C+ L+ Y + GCLE R+ EME E + +W+ ++ G G KEA+
Sbjct: 180 KDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIM 239
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE------------------ 110
F KM +G P+ VT +L + G ++ GR+ + +
Sbjct: 240 FQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGK 299
Query: 111 ----YGIIPQIEHYGCM--------VDLLSRAGFLQEAYE---FIRNMPIKPNGVVWGAL 155
YGII + + M + LSR G + +A E + ++ N V W ++
Sbjct: 300 SGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSI 359
Query: 156 LGGC 159
+ GC
Sbjct: 360 IAGC 363
>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Cucumis sativus]
gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 167/343 (48%), Positives = 228/343 (66%), Gaps = 1/343 (0%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEM-EERTVFTWSAMIQGLAIHGQAKEALTSF 69
+ +++ + N L+DMY KCG LE A +F M E+ V +WS MI GLA +G + +AL F
Sbjct: 244 YDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLF 303
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
M G KPN +T +G+L AC H G V++G +F SM +GI P EHYGC++DLL R
Sbjct: 304 EAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGR 363
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
AG L EA + I M +P+ V W LLG CRVHKN+DLA A++++ +LDP + G +++L
Sbjct: 364 AGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILL 423
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
SNIYA +++WEDVA VR+ MR GVKK PG S I V VH F+ GD +HP+ E+I +
Sbjct: 424 SNIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHPRIEEIKREL 483
Query: 250 EKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNL 309
+L+ + GY+P+T+ VL D+E ++ E L HSEKLA+ FGLM+ P I I KNL
Sbjct: 484 SQLIQRLMRLGYVPDTNFVLQDLEGEQMEDSLQYHSEKLAIVFGLMSLPNQKTIHIRKNL 543
Query: 310 RVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
R+C DCH KL+S++ NR IV+RD R+H F+ G CSCGDYW
Sbjct: 544 RICGDCHIFAKLVSQLENRVIVIRDPIRYHHFRGGVCSCGDYW 586
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 5/157 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VHE+ +G+ + NTLI+MYVK G L+ AR +F EM +R V +W+ MI +
Sbjct: 38 VHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNL 97
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+AL M+ G++PN T+ +L AC + R + + G+ +
Sbjct: 98 NHKALDFLILMLREGVRPNMYTYSSVLRACDGL----LNLRQLHGSILKVGLESDVFVRS 153
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D S+ G +A M I + VVW +++GG
Sbjct: 154 ALIDTYSKLGEQHDALNVFNEM-ITGDLVVWNSIIGG 189
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 5/150 (3%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G ++ V + LID Y K G A VF EM + W+++I G A + E L +
Sbjct: 144 GLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLY 203
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF-FYSMTTEYGIIPQIEHYGCMVDLLS 128
+M + T +L AC + ++ GR+ + + + +I ++D+
Sbjct: 204 KRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKYDQDLILN----NALLDMYC 259
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ G L++A M + + + W ++ G
Sbjct: 260 KCGSLEDANLLFTRMMTEKDVISWSTMIAG 289
>gi|115482642|ref|NP_001064914.1| Os10g0488900 [Oryza sativa Japonica Group]
gi|113639523|dbj|BAF26828.1| Os10g0488900, partial [Oryza sativa Japonica Group]
Length = 366
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 163/352 (46%), Positives = 232/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ R+ V +TL+DMY KCG + + ++F E+E RT W+A+I A HG
Sbjct: 15 QLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHG 74
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ +F++MI GI+PN + F+ LL AC H G VDEG ++FYSM +GI P+ EHY
Sbjct: 75 HGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHY 134
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C++D RAG L EAY+FI MPIKPN W +LLG CR+ + +L E A++ L +L+P
Sbjct: 135 SCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEP 194
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G HV LS IYA +WEDV VRKLMR+ +KK PG+S + + H F + D +HP
Sbjct: 195 GNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHP 254
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q + I++ E+L +K +GYIP+TS + ++E+ KE+ L HSE++A+ F L++ P
Sbjct: 255 QQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERIAVAFALISMPAT 314
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PI + KNLR+C DCH AFK I ++ R+I+VRD +RFH F G CSCGDYW
Sbjct: 315 KPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 366
>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
Length = 593
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 165/347 (47%), Positives = 234/347 (67%), Gaps = 4/347 (1%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G ++ + +L+DMY KCG LE A ++F M +R V +W++MI G + HG+ AL F
Sbjct: 247 GIVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYF 306
Query: 70 NKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
M+ + PN +TF+G+L AC H G V EGRR+F M TEY I P++EHYGC+VDLL+
Sbjct: 307 GCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLA 366
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGG-CRVHKNIDLAEEASRQ-LDQLDPLNNGYH 186
RAG + EA + + NMP++P+ V+W +LL C+ + ++L+EE +R+ L+ + +G +
Sbjct: 367 RAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQNAGVELSEEMARRVLEAEGGVCSGVY 426
Query: 187 VVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIF 246
V+LS +YA A RW DV VRKLM + GV K PG SSI +DGV HEF AGD +HPQ E+I+
Sbjct: 427 VLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEIDGVAHEFFAGDTSHPQTEEIY 486
Query: 247 QMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYR-HSEKLALTFGLMNTPPGTPIRI 305
+ + + ++ GY P++S + E + +++ R HSE+LA+ FGL+ T PG PIRI
Sbjct: 487 SALDVIEERVERVGYSPDSSQAPMVDETIDGKQYSLRLHSERLAIAFGLLKTKPGMPIRI 546
Query: 306 MKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
KNLRVC +CH KLIS + NREI+VRDR RFH F+ G+CSC DYW
Sbjct: 547 FKNLRVCNNCHQVTKLISRVFNREIIVRDRIRFHHFKDGACSCMDYW 593
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 14/170 (8%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + GF ++ + N+L+ Y C L+ A+ VF M ER++ +W+ +I G
Sbjct: 149 QIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFG 208
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ AL F +M + +P+G T + +AC MG + GI+ +
Sbjct: 209 EFDAALNLFGEMQKF-FEPDGYTIQSIANACAGMG------------SLSLGIVNDVLLN 255
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
+VD+ + G L+ A + MP K + W +++ G H + A E
Sbjct: 256 TSLVDMYCKCGSLELALQLFHRMP-KRDVTSWNSMILGFSTHGEVAAALE 304
>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
Length = 871
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 167/353 (47%), Positives = 234/353 (66%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIR-VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
++H Y ++ F + V N LIDMY K G ++ AR VF M +R +W++++ G +H
Sbjct: 519 QIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMH 578
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G+ +EAL F +M ++ + P+GVTF+ +L+AC H G VD+G +F M ++G++P EH
Sbjct: 579 GRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEH 638
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CMVDLLSRAG L EA E IR MP+KP VW ALL CRV+ N++L E A+ QL +L+
Sbjct: 639 YACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELE 698
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
N+G + +LSNIYA A W+DVAR+R LM+N G+KK PG S + F AGD +H
Sbjct: 699 SGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSH 758
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P +++I+ + L+ +K GY+P+ L D++++EK L HSEKLAL +G++ T P
Sbjct: 759 PMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAP 818
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIRI KNLR C DCH+AF IS I+ EI+VRD +RFH F+ GSCSC YW
Sbjct: 819 GAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 871
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 6/161 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTV---FTWSAMIQGLAI 58
VH SGF N+ V N L+ MY +CG E AR+VF EM ER V +W++++
Sbjct: 167 VHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQ 226
Query: 59 HGQAKEALTSFNKMIE-IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
G + A+ F +M E +GI+P+ V+ + +L AC +G G++ + G+ +
Sbjct: 227 GGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQ-VHGYALRSGLFEDV 285
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ ++ G ++EA + M +K + V W A++ G
Sbjct: 286 FVGNAVVDMYAKCGMMEEANKVFERMKVK-DVVSWNAMVTG 325
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
++ V N LIDMY KC + AR +F I ++R+V TW+ +I G A HG+A EAL F++
Sbjct: 427 DLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQ 486
Query: 72 MIEIG--IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
M++ + PN T L AC +G + GR+ + + C++D+ S+
Sbjct: 487 MLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSK 546
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+G + A NM + NGV W +L+ G +H
Sbjct: 547 SGDVDAARVVFDNMHQR-NGVSWTSLMTGYGMH 578
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 92/222 (41%), Gaps = 44/222 (19%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME------------------ 42
+VH Y+ +SG ++ V N ++DMY KCG +E A +VF M+
Sbjct: 271 QVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIG 330
Query: 43 -----------------ERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFI 85
E V TWSA+I G A G EAL F +M+ G +PN VT +
Sbjct: 331 RFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLV 390
Query: 86 GLLHACGHMGWVDEGR-------RFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
LL C G + G+ ++ ++ E + ++D+ S+ + A
Sbjct: 391 SLLSGCASAGTLLHGKETHCHAIKWILNL-DENDPGDDLMVINALIDMYSKCKSPKAARA 449
Query: 139 FIRNMPIKPNGVV-WGALLGGCRVHKNIDLAEEASRQLDQLD 179
+P K VV W L+GG H + A E Q+ Q D
Sbjct: 450 MFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPD 491
>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1212
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 162/352 (46%), Positives = 233/352 (66%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + GF + N+L+DMY +CG +E AR +F +++R + W++MI +HG
Sbjct: 575 IHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGC 634
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K+A+ F+KM + + P+ +TF+ LL+AC H G V EG++ F M EY + P EHY
Sbjct: 635 GKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYA 694
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL+R+ L+EAY F+RNMPI+P+ VW ALLG CR+H N DL E A+++L QL+
Sbjct: 695 CLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTE 754
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +V++SN +A RW DV VR +M+ +KK PG S I V+ +H F+A D++HPQ
Sbjct: 755 NSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVENKIHTFMARDKSHPQ 814
Query: 242 AEKIFQMWEKLLDGMKLK-GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
I+ + +K K GY T +V D+ E+EK + LY HSE+LAL +GL+ T G
Sbjct: 815 CNNIYLKLAQFTKLLKEKGGYRAQTKLVFHDVCEEEKTQMLYGHSERLALGYGLLVTSKG 874
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T +RI KNLR+C+DCHA FK+ SEI R +VVRD +RFH F+ G CSCGD+W
Sbjct: 875 TCLRITKNLRICDDCHAFFKIASEISQRTLVVRDASRFHHFERGLCSCGDFW 926
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 16/165 (9%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIE--MEERTVFTWSAMIQGLAIH 59
+H + + G+ + VCN LI MY KCG L GAR +F ME+ +W+++I
Sbjct: 170 IHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGE 229
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G++ EAL+ F +M E+G++ N TF+ L AC ++ GR + +I + H
Sbjct: 230 GESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGI-------HAVILKSNH 282
Query: 120 Y------GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ ++ + + G +++A ++M K + V W LL G
Sbjct: 283 FTDVYVSNALIAMYANCGQMEDAERVFKSMLFK-DCVSWNTLLSG 326
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + G +I + N ++++Y + ++ AR VF + + + +W++MI +G
Sbjct: 475 IHGYVLKGGLA-DILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGL 533
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A EAL FN +IE I+P+ +T + +L+A + + +G+ + G +
Sbjct: 534 AIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKE-IHGFLIRKGFFLEGLIAN 592
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ +R G ++ A I N + + ++W +++ +H
Sbjct: 593 SLVDMYARCGTMENARN-IFNYVKQRDLILWTSMINANGMH 632
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 76/160 (47%), Gaps = 8/160 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +S ++ V N LI MY CG +E A RVF M + +W+ ++ G+ +
Sbjct: 273 IHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDM 332
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+A+ F M + G KP+ V+ + ++ A G + G ++ ++GI +
Sbjct: 333 YSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGME-VHAYAIKHGIDSNMHIGN 391
Query: 122 CMVDLLSR---AGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ + ++ A+E+ MP K + + W ++ G
Sbjct: 392 SLIDMYGKCCCVKYMGSAFEY---MPEK-DLISWTTIIAG 427
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
+ MY KCG A +VF +M ERT+FTW+AMI G+ EA+ + +M +G+ +
Sbjct: 88 FVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLD 147
Query: 81 GVTFIGLLHACG 92
TF +L ACG
Sbjct: 148 AFTFPCVLKACG 159
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y+ + G N+ + N+LIDMY KC C++ F M E+ + +W+ +I G A +
Sbjct: 374 VHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNEC 433
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACG 92
+AL K+ + + + +L AC
Sbjct: 434 HLDALNLLRKVQLEKMDVDPMMIGSILLACS 464
>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 638
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 163/354 (46%), Positives = 232/354 (65%), Gaps = 2/354 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + +SG + + N+LIDMY KCG + ARR+F M ERT +W+AM+ G + HG
Sbjct: 285 QVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHG 344
Query: 61 QAKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTT-EYGIIPQIE 118
A+E L F M E +KP+ +T++ +L C H D G FY+M + GI P I
Sbjct: 345 MAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIG 404
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
HYGC+VDLL RAG ++EA++FI+ MP P +WG+LLG CRVH ++++ ++L +L
Sbjct: 405 HYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLEL 464
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
+P N G +V+LSN+YA A +WED+ +R LM+ V K PG S + +D +VH F A D T
Sbjct: 465 EPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHT 524
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
HP+ E++ ++L K GY+P+ S VL D++E++KEK L HSEKLAL FGL+ TP
Sbjct: 525 HPRREEVANKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATP 584
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GT IR++KNLR+C DCH+ K +S + R +++RD+NRFH G CSCGDYW
Sbjct: 585 EGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 638
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 93/179 (51%), Gaps = 7/179 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH + ++ + ++ + LI +Y KC CL AR +F EM +R V +W+AMI + G
Sbjct: 83 RVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRG 142
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHAC-GHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
A EAL F +M+ +PN TF +L +C G +G+ E R +S+ + +
Sbjct: 143 FAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGF--ETGRQIHSIAIKRNYESHMFV 200
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++D+ +++G + +A+ +P + + V A++ G + + L EEA + QL
Sbjct: 201 GSSLLDMYAKSGRICDAHGVFHCLP-ERDVVACTAIISG---YAQMGLDEEALKLFRQL 255
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 93/193 (48%), Gaps = 5/193 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + + ++ V ++L+DMY K G + A VF + ER V +A+I G A G
Sbjct: 184 QIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMG 243
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F ++ G+ N VT+ +L A + ++ G++ +S G +
Sbjct: 244 LDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQ-VHSHVLRSGQYSYVVLL 302
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH---KNIDLAEEASRQLDQ 177
++D+ S+ G + A +MP + + W A+L G H + + + R+ ++
Sbjct: 303 NSLIDMYSKCGNVCYARRIFDSMP-ERTCISWNAMLVGYSKHGMAREVLELFKLMREENK 361
Query: 178 LDPLNNGYHVVLS 190
+ P + Y VLS
Sbjct: 362 VKPDSITYLAVLS 374
>gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera]
Length = 652
Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 168/350 (48%), Positives = 232/350 (66%), Gaps = 30/350 (8%)
Query: 4 EYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAK 63
E + + G + N + +LIDMY KCG L+ A VF +E + VF WSAMI GLA+HG K
Sbjct: 332 EVTLKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGK 391
Query: 64 EALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCM 123
+A+ F+KM E +KPN VTF +L AC H+G V+EGR FF M YG
Sbjct: 392 DAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYG----------- 440
Query: 124 VDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183
MP+ P VWGALLG C +H+N+ LAE+A QL +L+P N+
Sbjct: 441 ------------------KMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNH 482
Query: 184 GYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAE 243
G +V+LSNIYA+A +W+ V+ +RKLMR++G+KK PG SSI VDG+VHEF+ GD +HP A+
Sbjct: 483 GAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAK 542
Query: 244 KIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKE-KEKFLYRHSEKLALTFGLMNTPPGTP 302
KI+ ++++ ++ GY+PN S +L +EE++ KE+ L+ HSEKLA+ FGL++T P
Sbjct: 543 KIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQP 602
Query: 303 IRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC DCH+ KL+S++ +REI++RDR RFH F+ G CSC DYW
Sbjct: 603 IRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 652
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+ ++ + N ++DMY KCG +E A+R+F +M E+ + +W+ M+ G A G+ A F+
Sbjct: 231 QNSLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDA 290
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM-----------TTEYGIIPQIEHY 120
M I + L+ A G E F+ + T + G+
Sbjct: 291 MPNQDI----AAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLKQGMKLNCHLT 346
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ + G LQ+A ++ K + VW A++ G +H
Sbjct: 347 TSLIDMYCKCGDLQKALMVFHSVERK-DVFVWSAMIAGLAMH 387
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 9/145 (6%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ + N+LI Y KCG L RVF+ + R V +W++MI G +EAL F +M
Sbjct: 170 DVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEME 229
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
+ + CG V++ +R F M + I + M+ ++ G
Sbjct: 230 TQNSLTLSNAMLDMYTKCGS---VEDAKRLFDKMPEK-----DIVSWTTMLVGYAKIGEY 281
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGG 158
A MP + + W AL+
Sbjct: 282 DAAQGIFDAMPNQ-DIAAWNALISA 305
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWS-AMIQGLAIHGQAKEALTSFN 70
RR++ N++I +V+ GC E A +F EME + T S AM+ G ++A F+
Sbjct: 199 RRDVVSWNSMITAFVQGGCPEEALELFQEMETQNSLTLSNAMLDMYTKCGSVEDAKRLFD 258
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
KM E I V++ +L +G D + F +M + I + ++ +
Sbjct: 259 KMPEKDI----VSWTTMLVGYAKIGEYDAAQGIFDAMPNQ-----DIAAWNALISAYEQC 309
Query: 131 GFLQEAYEFIRNMPI----KPNGVV 151
G +EA E + + KP+ V
Sbjct: 310 GKPKEALELFHELQLSKTAKPDEVT 334
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 88/205 (42%), Gaps = 26/205 (12%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK-PNGVTFIGLLH 89
L+ A++VF ++ ++TW+ +I+ A ++L F +M+ P+ TF L+
Sbjct: 85 LDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIK 144
Query: 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNG 149
A + + G+ F+ M + + + ++ ++ G L Y N+P + +
Sbjct: 145 AASELEELFTGKA-FHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIP-RRDV 202
Query: 150 VVWGALL-----GGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSN----IYAEAERWE 200
V W +++ GGC EEA +++ N+ + LSN +Y + E
Sbjct: 203 VSWNSMITAFVQGGC--------PEEALELFQEMETQNS---LTLSNAMLDMYTKCGSVE 251
Query: 201 DVARVRKLMRNLGVKKTPGWSSITV 225
D R L + K W+++ V
Sbjct: 252 DAKR---LFDKMPEKDIVSWTTMLV 273
>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 579
Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 165/339 (48%), Positives = 226/339 (66%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
+ +++ + N L+DMY KCG LE ARRVF +M+ER V TWS MI GLA +G ++EAL F
Sbjct: 241 YDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFE 300
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
M G KPN +T +G+L AC H G +++G +F SM YGI P EHYGCM+DLL +A
Sbjct: 301 LMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKA 360
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190
G L +A + + M +P+ V W LLG CRV +N+ LAE A++++ LDP + G + VLS
Sbjct: 361 GKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTVLS 420
Query: 191 NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWE 250
NIYA +++W+ V +RK MR++G+KK PG S I V+ +H F+ GDE+HPQ ++ +
Sbjct: 421 NIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVNKKLN 480
Query: 251 KLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLR 310
+L+ + GY+P T+ VL D+E ++ E L HSEKLAL FGLM P IRI KNLR
Sbjct: 481 QLIHRLIGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPSEKVIRIRKNLR 540
Query: 311 VCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCG 349
+C DCH KL S++ NR IV+RD R+H FQ G CSCG
Sbjct: 541 ICGDCHVFCKLASKLENRNIVIRDPIRYHHFQDGKCSCG 579
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 87/176 (49%), Gaps = 13/176 (7%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLA---IH 59
H Y N G + + + N LI+MYVK L A ++F +M +R V +W+ MI + IH
Sbjct: 38 HLYFN--GHQPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIH 95
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+A E L M+ G++PN T+ +L AC M V R + + G+ +
Sbjct: 96 QKALELLV---LMLRDGVRPNVYTYSSVLRACNGMSDV----RMLHCGIIKEGLESDVYV 148
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
++D+ ++ G ++A M + + +VW +++GG + D+A E +++
Sbjct: 149 RSALIDVFAKLGEPEDALSVFDEM-VTGDAIVWNSIIGGFAQNSRSDVALELFKRM 203
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 41/188 (21%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
+ G ++ V + LID++ K G E A VF EM W+++I G A + ++ AL
Sbjct: 139 KEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALE 198
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHM--------------------------------- 94
F +M G T +L AC +
Sbjct: 199 LFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKC 258
Query: 95 GWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA---YEFIRNMPIKPNGVV 151
G +++ RR F M E +I + M+ L++ G+ QEA +E +++ KPN +
Sbjct: 259 GSLEDARRVFNQM-KERDVIT----WSTMISGLAQNGYSQEALKLFELMKSSGTKPNYIT 313
Query: 152 WGALLGGC 159
+L C
Sbjct: 314 IVGVLFAC 321
>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930 [Vitis vinifera]
gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
Length = 743
Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 166/344 (48%), Positives = 228/344 (66%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
SG I V N LI +Y KCG E + R+F EM R +W+A++ G A G+A E +
Sbjct: 400 SGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGL 459
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
F +M+ G+KP+GVTFIG+L AC G V++G ++F SM E+GI+P ++H C++DLL
Sbjct: 460 FERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLG 519
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVV 188
RAG L+EA FI NMP P+ V W LL CRVH ++++ + A+ L L+P N +V+
Sbjct: 520 RAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVL 579
Query: 189 LSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQM 248
LS++YA +W+ VA++R+ MR+ V+K PG+S I G VH F A D++ P +I+
Sbjct: 580 LSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAE 639
Query: 249 WEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKN 308
EKL M +GY+P+ S VL D+EE EK K L HSEKLA+ FGL+ PPG PIR++KN
Sbjct: 640 LEKLNYKMIEEGYVPDMSSVLHDVEESEKIKMLNHHSEKLAIAFGLIFVPPGLPIRVIKN 699
Query: 309 LRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
LRVC DCH A K IS+I REI+VRD RFH F+ G+CSCGD+W
Sbjct: 700 LRVCGDCHNATKFISKITQREILVRDAVRFHLFKDGTCSCGDFW 743
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 85/158 (53%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y ++ + N+ V + L+DMY KC ++ A VF M ++ V +W+AM+ G +G
Sbjct: 291 QIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNG 350
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++EA+ F +M G++P+ T ++ +C ++ ++EG + F+ G+I I
Sbjct: 351 FSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQ-FHCRALVSGLISFITVS 409
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ L + G + ++ M I+ + V W ALL G
Sbjct: 410 NALITLYGKCGSTENSHRLFTEMNIR-DEVSWTALLAG 446
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 81/147 (55%), Gaps = 4/147 (2%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ +CNT+I ++CG +E ++R+F ++ER +W+ MI GL +G +EAL F +M
Sbjct: 202 RNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREM 261
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLLSRAG 131
G + TF +L ACG + + EG++ Y + T++ + +VD+ S+
Sbjct: 262 RLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHK--DNVFVGSALVDMYSKCR 319
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ A + MP K N + W A+L G
Sbjct: 320 SIKSAETVFKRMPQK-NVISWTAMLVG 345
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 2/132 (1%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N+ NT++ +Y K G L +++F M R +W+ I G A +G +A+ + M+
Sbjct: 70 NLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLML 129
Query: 74 -EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ + N +TF +L C VD GR+ ++G + +VD+ ++ G
Sbjct: 130 KDAAMNLNRITFSTMLILCSKFRCVDLGRQ-INGQILKFGFGSDVFVGSPLVDMYTKLGL 188
Query: 133 LQEAYEFIRNMP 144
+ +A + MP
Sbjct: 189 IYDAKRYFDEMP 200
>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
Length = 719
Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 173/356 (48%), Positives = 224/356 (62%), Gaps = 4/356 (1%)
Query: 1 RVHEYSNQSGFRRN-IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
++H + +S N I V N LI MY KCG L+ ARR+F M E + ++MI G A H
Sbjct: 364 QIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQH 423
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G E+L F M+E I P +TFI +L AC H G V+EG +F M ++ I P+ EH
Sbjct: 424 GIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEH 483
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CM+DLL RAG L EA I MP P + W +LLG CR H NI+LA +A+ Q+ QL+
Sbjct: 484 YSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLE 543
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N +VVLSN+YA A RWE+VA VRK MR+ GVKK PG S I V +H FVA D +H
Sbjct: 544 PSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSH 603
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEK---EKEKFLYRHSEKLALTFGLMN 296
P ++I++ E++ MK GY+P+ L+ + EKE L HSEKLA+ FGL++
Sbjct: 604 PMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLIS 663
Query: 297 TPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T G P+ ++KNLR+C DCH A K IS I REI VRD +RFHCF+ G CSCGDYW
Sbjct: 664 TKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 84/158 (53%), Gaps = 5/158 (3%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGC-LEGARRVFIEMEERTVFTWSAMIQGLAIHGQ-AKEA 65
++GF +N V + LID+Y KCG + R+VF E+ E + W+ M+ G + + + ++A
Sbjct: 268 KTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDA 327
Query: 66 LTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP-QIEHYGCMV 124
L F +M IG +PN +F+ ++ AC ++ +G++ +S+ + I +I ++
Sbjct: 328 LECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQ-IHSLALKSDIPSNRISVDNALI 386
Query: 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ S+ G LQ+A M + N V +++ G H
Sbjct: 387 AMYSKCGNLQDARRLFDRMA-EHNTVSLNSMIAGYAQH 423
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 82/180 (45%), Gaps = 6/180 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE-RTVFTWSAMIQGLAIH 59
++H + SGF + V N L+ Y K G L+ A+RVF M R +W++MI H
Sbjct: 159 QLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQH 218
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+ +AL F +M+ G+ + T +L A + + G + F+ + G Q H
Sbjct: 219 QEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQ-FHGQLIKTG-FHQNSH 276
Query: 120 YGC-MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
G ++DL S+ G + +P+ V+W ++ G +N + E+A Q+
Sbjct: 277 VGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSG--YSQNEEFLEDALECFRQM 334
>gi|357141490|ref|XP_003572243.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Brachypodium distachyon]
Length = 884
Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 158/350 (45%), Positives = 229/350 (65%), Gaps = 1/350 (0%)
Query: 4 EYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAK 63
EY+ + G+ ++V N++I MY +CGC+E A +VF +++V TWSAMI GLA +G +
Sbjct: 535 EYAVEHGYGCELKVRNSVITMYTRCGCVEKAYQVFCHTPQKSVVTWSAMIMGLAANGFGE 594
Query: 64 EALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCM 123
+A+++F +M G+ P+G TF G+L AC H G VDEG RFF M EY ++P + HYGC+
Sbjct: 595 DAISAFEEMSRSGVVPDGQTFTGVLSACSHSGLVDEGFRFFDMMRYEYKMMPNVRHYGCI 654
Query: 124 VDLLSRAGFLQEAYEFI-RNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182
VDL+ RAG L EAYE + + M + P+ +W LLG CR+H ++DL E+ L +L
Sbjct: 655 VDLMGRAGLLDEAYELVVKEMKVAPDATIWRTLLGACRIHGHVDLGEKVISHLIELKAQQ 714
Query: 183 NGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQA 242
G +V+L N YA A WE VA VRKLMR ++ TPG +++ ++G +HEF+A D +HP+
Sbjct: 715 AGDYVLLLNTYAAAGDWEKVAEVRKLMRENEIQTTPGCTTVELNGELHEFIADDASHPRK 774
Query: 243 EKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTP 302
+I+ +++ +++ GY+P+ S L D++ + KE L HSEKLA+ F L+ P P
Sbjct: 775 AEIYGKLDEINRHLRIAGYVPHVSSDLHDLDSEGKECALTYHSEKLAIAFALLVMPQRRP 834
Query: 303 IRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR+ KNLRVC DCH K+ S + NR ++VRDR RFH F G CSC DYW
Sbjct: 835 IRLAKNLRVCVDCHNFTKVFSGVYNRLVIVRDRTRFHHFNGGQCSCNDYW 884
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 80/151 (52%), Gaps = 4/151 (2%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G R+ + +L+ Y CG + AR+VF EM + W+ +I A + + K+ L F
Sbjct: 438 GHLRDSLLATSLMRSYAICGVGDCARKVFDEMVMKDTVAWNVLITCYARNKRTKDTLWLF 497
Query: 70 NKMI--EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
++M E +KP+ VT I LL AC +G +D G + + E+G +++ ++ +
Sbjct: 498 DEMRRGESEVKPDEVTCILLLQACTSLGALDFGEQ-IWEYAVEHGYGCELKVRNSVITMY 556
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+R G +++AY+ + P K + V W A++ G
Sbjct: 557 TRCGCVEKAYQVFCHTPQK-SVVTWSAMIMG 586
>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Glycine max]
Length = 711
Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 169/353 (47%), Positives = 228/353 (64%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH +S F +++ V + LI MYVKCG L A++VF + V W++MI G + HG
Sbjct: 359 QVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHG 418
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F+ M G+ P+ VTFIG+L AC + G V EG F +M +Y + P IEHY
Sbjct: 419 LGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHY 478
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL RA + EA + + MP++P+ +VWGALLG CR H +DLAE A +L QL+P
Sbjct: 479 ACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLAEVAVEKLAQLEP 538
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET-H 239
N G +V+LSN+YA RW DV +R+ ++ V K PG S I V+ VH F GD H
Sbjct: 539 KNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTKLPGCSWIEVEKKVHMFTGGDSKGH 598
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ I +M EKL ++ GY P+ S VL D++E+EK L HSEKLA+ +GL+ P
Sbjct: 599 PEQPIIMKMLEKLGGLLREAGYCPDGSFVLHDVDEEEKTHSLGYHSEKLAVAYGLLKVPE 658
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIR+MKNLRVC DCH+A KLI+++ REI++RD NRFH F+ G CSC DYW
Sbjct: 659 GMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFHHFKDGHCSCKDYW 711
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 78/172 (45%), Gaps = 14/172 (8%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+RN N LI ++K G L ARRVF M +R V +W++M++G +G EA F
Sbjct: 83 QRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWH 142
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M + V GLL G VD+ R+ F M E ++ M+ G
Sbjct: 143 MPHKNVVSWTVMLGGLLQE----GRVDDARKLF-DMMPEKDVVAVTN----MIGGYCEEG 193
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183
L EA MP K N V W A++ G + +D+A R+L ++ P N
Sbjct: 194 RLDEARALFDEMP-KRNVVTWTAMVSGYARNGKVDVA----RKLFEVMPERN 240
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 7/160 (4%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+ + VCN +I + G ++ ARRVF M+ER TWSAMI+ G EAL F +M
Sbjct: 270 KPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRM 329
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMT-TEYGIIPQIEHYGCMVDLLSRAG 131
G+ N + I +L C + +D G++ + +E+ + ++ + + G
Sbjct: 330 QREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFD--QDLYVASVLITMYVKCG 387
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
L A + P+K + V+W +++ G H L EEA
Sbjct: 388 NLVRAKQVFNRFPLK-DVVMWNSMITGYSQH---GLGEEA 423
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 12/160 (7%)
Query: 22 IDMYVKCGCLEGARRVFIE--MEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP 79
I Y + G L+ AR+VF E + RTV +W+AM+ Q +EAL F KM +
Sbjct: 29 IACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQ----R 84
Query: 80 NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEF 139
N V++ GL+ G + E RR F +M + + MV R G + EA
Sbjct: 85 NTVSWNGLISGHIKNGMLSEARRVFDTMPDR-----NVVSWTSMVRGYVRNGDVAEAERL 139
Query: 140 IRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
+MP K N V W +LGG +D A + + + D
Sbjct: 140 FWHMPHK-NVVSWTVMLGGLLQEGRVDDARKLFDMMPEKD 178
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 96/216 (44%), Gaps = 16/216 (7%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+RN+ ++ Y + G ++ AR++F M ER +W+AM+ G G+ +EA + F+
Sbjct: 207 KRNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMREASSLFDA 266
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M +KP V ++ G G VD+ RR F M + M+ + R G
Sbjct: 267 M---PVKPV-VVCNEMIMGFGLNGEVDKARRVFKGMKER-----DNGTWSAMIKVYERKG 317
Query: 132 FLQEAYEFIRNMPIKPNGVVWGAL---LGGCRVHKNIDLAEEASRQLDQLDPLNNGY-HV 187
+ EA R M + + + +L L C ++D ++ QL + + + Y
Sbjct: 318 YELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVAS 377
Query: 188 VLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSI 223
VL +Y + ++ R +++ +K W+S+
Sbjct: 378 VLITMYVKC---GNLVRAKQVFNRFPLKDVVMWNSM 410
>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
Length = 696
Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 177/353 (50%), Positives = 231/353 (65%), Gaps = 3/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + +S NI V + L+DMY KCG +E A +VF EM +R + TW+AMI G A G
Sbjct: 345 LHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQRNLVTWNAMIGGYAHIGD 404
Query: 62 AKEALTSFNKMIEIG--IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
A AL+ F+KMI +G PN +T + +L AC G EG F +M +GI P+IEH
Sbjct: 405 AHNALSVFDKMI-MGQETAPNYITLVNVLTACSRGGLTKEGYELFQTMKWRFGIEPRIEH 463
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y C+VDLL RAG + AY+ I+ MP++P+ VWGALLGGC++H +L A+ +L +LD
Sbjct: 464 YACVVDLLCRAGMEERAYKIIQGMPMRPSISVWGALLGGCKMHGKTELGRIAAEKLFELD 523
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P ++G HV+LSN+ A A RW + VRK M+N+G+KK PG S IT VVH F A D TH
Sbjct: 524 PQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKDPGRSWITWKNVVHVFQAKDTTH 583
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
+I + KL M+ GY+P+T L D+EE+EKE +++HSEKLAL FGL+ PP
Sbjct: 584 DMNREIQALLAKLKGQMQAAGYMPDTQYALYDLEEEEKESEVFQHSEKLALAFGLICIPP 643
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIRIMKNLR+C DCH AFK IS I REI+VRD N FH F+ CSC DYW
Sbjct: 644 GIPIRIMKNLRICVDCHRAFKFISGIAGREIIVRDNNMFHHFKNYECSCKDYW 696
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 5/178 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ + + + GF +++ V N+++D Y KC C+ AR VF M R +W +M+ A +G
Sbjct: 243 QFYGFVAKCGFGKDVSVSNSVVDFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNG 302
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA + G +P +L C + +D GR +++ I I
Sbjct: 303 AEEEAFFVYLGARRAGEEPTDFMVSSVLTTCAGLLGLDLGRA-LHAVAVRSCIDSNIFVA 361
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+VD+ + G +++A + MP + N V W A++GG + +I A A D++
Sbjct: 362 SALVDMYGKCGGIEDAEQVFFEMPQR-NLVTWNAMIGG---YAHIGDAHNALSVFDKM 415
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 2/135 (1%)
Query: 22 IDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNG 81
+DMY K GCL ARR+F EM R V W+A++ + G+ E + ++ + G PN
Sbjct: 163 LDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTNAVLDGRPLETVEAYFGLRGAGGMPNV 222
Query: 82 VTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIR 141
V+ +AC M + G + FY + G + +VD + + +A
Sbjct: 223 VSVCAFFNACAGMTNLSLGEQ-FYGFVAKCGFGKDVSVSNSVVDFYGKCRCVGKARAVFD 281
Query: 142 NMPIKPNGVVWGALL 156
M ++ N V W +++
Sbjct: 282 GMGVR-NNVSWCSMV 295
>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 821
Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 168/352 (47%), Positives = 232/352 (65%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFI-EMEERTVFTWSAMIQGLAIHG 60
VH + + G+ + + + LIDMY KCG + A ++F E + V ++MI G +HG
Sbjct: 470 VHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHG 529
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ AL +++MIE +KPN TF+ LL AC H G V+EG+ F+SM ++ + PQ +HY
Sbjct: 530 HGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHY 589
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDL SRAG L+EA E ++ MP +P+ V ALL GCR HKN ++ + + +L LD
Sbjct: 590 ACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQIADRLISLDY 649
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
LN+G +V+LSNIYAEA +WE V +R LMR G+KK PG+S I V V+ F A D++HP
Sbjct: 650 LNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVYTFFASDDSHP 709
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
I+Q+ E L ++ +GYIP+TS VL D+ E K K L+ HSE+LA+ FGL++TP G
Sbjct: 710 SWADIYQLLENLRLEVEAEGYIPDTSCVLRDVNEPMKVKLLWGHSERLAIAFGLLSTPCG 769
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ I+I KNLRVC DCH K IS+IV REI+VRD NRFH F G CSC D+W
Sbjct: 770 SLIKITKNLRVCVDCHNVTKYISKIVQREIIVRDANRFHHFVNGKCSCNDFW 821
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 68/124 (54%), Gaps = 1/124 (0%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
++DMY KCG ++ A VF M ++ V TW+AM+ GL+ +G A++AL F +M E +
Sbjct: 386 TAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVA 445
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
N VT + L+H C H+G + +GR ++ +G ++D+ ++ G + A +
Sbjct: 446 ANSVTLVSLVHCCAHLGSLTKGRT-VHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEK 504
Query: 139 FIRN 142
N
Sbjct: 505 LFNN 508
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 2/156 (1%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H Y G ++ V +L+DMY G A VF M R++ +W+AMI G +G
Sbjct: 269 HSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMI 328
Query: 63 KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC 122
E+ F ++++ G + T + L+ C ++ G R +S + +
Sbjct: 329 PESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENG-RILHSCIIRKELESHLVLSTA 387
Query: 123 MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ S+ G +++A M K N + W A+L G
Sbjct: 388 IVDMYSKCGAIKQATIVFGRMG-KKNVITWTAMLVG 422
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 2/149 (1%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF ++ V +++++ VK G L A++VF M E+ V W+++I G G E++ F
Sbjct: 175 GFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMF 234
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+MI G++P+ VT LL ACG G G +S G+ + +VD+ S
Sbjct: 235 LEMIGGGLRPSPVTMANLLKACGQSGLKKVG-MCAHSYVLALGMGNDVFVLTSLVDMYSN 293
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
G A +M + + + W A++ G
Sbjct: 294 LGDTGSAALVFDSMCSR-SLISWNAMISG 321
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 56/138 (40%), Gaps = 2/138 (1%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
LI +Y G L AR VF + +AMI G + Q E F M I+ N
Sbjct: 85 LIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEIN 144
Query: 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFI 140
T + L AC + DE G + MV+ L + G+L +A +
Sbjct: 145 SYTCMFALKACTDL-LDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVF 203
Query: 141 RNMPIKPNGVVWGALLGG 158
MP K + V W +++GG
Sbjct: 204 DGMPEK-DVVCWNSIIGG 220
>gi|357124741|ref|XP_003564056.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g34160-like [Brachypodium distachyon]
Length = 594
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 166/353 (47%), Positives = 237/353 (67%), Gaps = 7/353 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIH 59
VHE++ + G N+RVCN LIDMY KCG L+ A VF I+ E+RT+ +++ IQ +++H
Sbjct: 247 VHEFARKIGVNGNVRVCNALIDMYSKCGSLDLALEVFHSIKREDRTLVSYNTAIQAVSMH 306
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G +AL F++M I+P+ VT+I +L C H G VD+G R F+SM ++P ++H
Sbjct: 307 GHGGDALRLFDEMPTF-IEPDEVTYIAVLCGCNHAGLVDDGLRVFHSMR----VLPNVKH 361
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YG +VDLL RAG L EAY+ I +MP + V+W LLG + H +++LAE A+ +LD+L
Sbjct: 362 YGAVVDLLGRAGRLAEAYDTIVSMPFPADIVLWQTLLGAAKTHGDVELAELAATKLDELG 421
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
+G +V+LSN+YA RW DV RVR MR+ V+K PG+S + GV+H+F+ GD+ H
Sbjct: 422 SNVDGDYVLLSNVYASKARWADVRRVRDTMRSNDVRKVPGFSYTEISGVMHKFINGDKEH 481
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ ++I++ E+++ + GY P TS VL DI E+EK+ L HSEKLA+ FGL+ TPP
Sbjct: 482 PRWQEIYRALEEIVSRIGELGYEPETSNVLHDIGEEEKQYALSYHSEKLAIAFGLIATPP 541
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G +R++KNLR C DCH KLIS+ R I++RDR RFH F+ G CSC DYW
Sbjct: 542 GETLRVIKNLRTCGDCHVVAKLISKAYGRVIIIRDRARFHQFEDGQCSCKDYW 594
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 7/140 (5%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G ++R+ TL+D Y KCG L AR+VF EM R V +W+A++ GLA + AL F
Sbjct: 148 GCTPDVRLITTLVDSYAKCGDLASARKVFDEMVVRDVASWNALLAGLAQGTEPTLALALF 207
Query: 70 NKMI----EIGIK--PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCM 123
++++ E+ + PN VT + L AC +G + +G + + + G+ + +
Sbjct: 208 HRLVGSFRELPPREEPNEVTIVAALSACAQIGSLQDG-LYVHEFARKIGVNGNVRVCNAL 266
Query: 124 VDLLSRAGFLQEAYEFIRNM 143
+D+ S+ G L A E ++
Sbjct: 267 IDMYSKCGSLDLALEVFHSI 286
>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Vitis vinifera]
Length = 719
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 173/356 (48%), Positives = 224/356 (62%), Gaps = 4/356 (1%)
Query: 1 RVHEYSNQSGFRRN-IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
++H + +S N I V N LI MY KCG L+ ARR+F M E + ++MI G A H
Sbjct: 364 QIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQH 423
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G E+L F M+E I P +TFI +L AC H G V+EG +F M ++ I P+ EH
Sbjct: 424 GIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEH 483
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CM+DLL RAG L EA I MP P + W +LLG CR H NI+LA +A+ Q+ QL+
Sbjct: 484 YSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLE 543
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N +VVLSN+YA A RWE+VA VRK MR+ GVKK PG S I V +H FVA D +H
Sbjct: 544 PSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSH 603
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEK---EKEKFLYRHSEKLALTFGLMN 296
P ++I++ E++ MK GY+P+ L+ + EKE L HSEKLA+ FGL++
Sbjct: 604 PMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLIS 663
Query: 297 TPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T G P+ ++KNLR+C DCH A K IS I REI VRD +RFHCF+ G CSCGDYW
Sbjct: 664 TKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 84/158 (53%), Gaps = 5/158 (3%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGC-LEGARRVFIEMEERTVFTWSAMIQGLAIHGQ-AKEA 65
++GF +N V + LID+Y KCG + R+VF E+ E + W+ M+ G + + + ++A
Sbjct: 268 KTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDA 327
Query: 66 LTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP-QIEHYGCMV 124
L F +M IG +PN +F+ ++ AC ++ +G++ +S+ + I +I ++
Sbjct: 328 LECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQ-IHSLALKSDIPSNRISVDNALI 386
Query: 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ S+ G LQ+A M + N V +++ G H
Sbjct: 387 AMYSKCGNLQDARRLFDRMA-EHNTVSLNSMIAGYAQH 423
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 82/180 (45%), Gaps = 6/180 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE-RTVFTWSAMIQGLAIH 59
++H + SGF + V N L+ Y K G L+ A+RVF M R +W++MI H
Sbjct: 159 QLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQH 218
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+ +AL F +M+ G+ + T +L A + + G + F+ + G Q H
Sbjct: 219 QEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQ-FHGQLIKTG-FHQNSH 276
Query: 120 YGC-MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
G ++DL S+ G + +P+ V+W ++ G +N + E+A Q+
Sbjct: 277 VGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSG--YSQNEEFLEDALECFRQM 334
>gi|115465559|ref|NP_001056379.1| Os05g0572900 [Oryza sativa Japonica Group]
gi|52353535|gb|AAU44101.1| unknown protein [Oryza sativa Japonica Group]
gi|113579930|dbj|BAF18293.1| Os05g0572900 [Oryza sativa Japonica Group]
gi|215737011|dbj|BAG95940.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 687
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 167/336 (49%), Positives = 224/336 (66%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
VCN L++MY K G +E ARRVF+ M R V +W+++I G A HG+A+EA+ +F+ M+
Sbjct: 352 VCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAE 411
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
P+ VTFIG+L AC +G VDEG + M E G+ P EHY CMV LL R G L EA
Sbjct: 412 EVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMVGLLCRVGRLDEA 471
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
FI + I + V W +LL C+V++N L + Q+ QL P + G +V+LSN+YA+A
Sbjct: 472 ERFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQLKPKDVGTYVLLSNMYAKA 531
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGM 256
RW+ V +VR+LMR LGV+K PG S I V VH F + D+ HP E+I + ++L+D +
Sbjct: 532 NRWDGVVKVRRLMRELGVRKEPGVSWIQVGSEVHVFTSEDKKHPYMEQITKKLQELIDKI 591
Query: 257 KLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCH 316
K+ GY+PN +V L D+E+++KE+ L HSEKLAL FGL+ TP G IRIMKN+R+C+DCH
Sbjct: 592 KVIGYVPNIAVALHDVEDEQKEEHLMYHSEKLALAFGLIRTPKGEAIRIMKNVRICDDCH 651
Query: 317 AAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
A KLIS R IVVRD RFHC + G CSC DYW
Sbjct: 652 VAIKLISLATGRRIVVRDTVRFHCIEDGVCSCDDYW 687
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 84/173 (48%), Gaps = 6/173 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + N+ V + L+DMY KC A RVF + E+ + +W+A++ +
Sbjct: 235 QVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNE 294
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM--TTEYGIIPQIE 118
++AL F M G++PN T+ L++C + + G T +G++P
Sbjct: 295 LFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPVCN 354
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
++++ S++G +++A +MP + + V W +++ G H A EA
Sbjct: 355 ---ALMNMYSKSGSVEDARRVFLSMPCR-DVVSWNSIIIGYAHHGRAREAMEA 403
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 71/154 (46%), Gaps = 2/154 (1%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H Y+ ++G + VC+ ++ MY +C ++ A +VF + VF +++MI G GQ
Sbjct: 136 HGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDRGQM 195
Query: 63 KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC 122
+ + M+ + + V+++ +L C V G + ++ + + +
Sbjct: 196 DGSTSIVRSMVRNVGQWDHVSYVAVLGHCASTKEVVLGSQ-VHTQALKRRLELNVYVGSA 254
Query: 123 MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
+VD+ + F EA +P K N V W A++
Sbjct: 255 LVDMYGKCDFPHEANRVFEVLPEK-NIVSWTAIM 287
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N LI +YVKCG L AR+VF M R + + ++ G A G+ ++AL + ++ + G+
Sbjct: 54 NNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGYASSGRHRDAL-ALLRVADFGL- 111
Query: 79 PNGVTFIGLLHACGHMGWVDEGRR 102
N + A H+ D GR+
Sbjct: 112 -NEYVLSSAVAATAHVRSYDMGRQ 134
>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 682
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 166/345 (48%), Positives = 227/345 (65%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
++G ++ V N L++MY K G +E A RVFI M R V +W+ +I G A HG A+E +
Sbjct: 338 KTGHWDHLLVSNALMNMYSKSGSIEDAHRVFISMPLRDVVSWNLIITGYAHHGLAREGME 397
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
+F+ M+ + P+ VTF+G+L AC +G VDE + +M E GI P EHY CMV LL
Sbjct: 398 AFHSMLSAAVIPSYVTFVGVLSACAQLGLVDEAFYYLNTMMKEVGITPGKEHYTCMVGLL 457
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV 187
R G L EA FI N I + V W +LL C+V+KN L + Q+ QL+P + G +V
Sbjct: 458 CRVGRLDEAERFIVNNCIGTDVVAWRSLLNSCQVYKNYGLGHRVAEQILQLEPSDVGTYV 517
Query: 188 VLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQ 247
+LSN+YA+A RW+ V +VRK MR V+K+PG S I V VH F + ++ HPQ ++I +
Sbjct: 518 LLSNMYAKANRWDGVVKVRKHMRERAVRKSPGVSWIHVGSDVHVFTSEEKVHPQMDQIAK 577
Query: 248 MWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMK 307
E+L+D +K GY+PN +VVL DI+++ KE+ L HSEKLAL FGL++TP G I IMK
Sbjct: 578 KLEELIDQIKAIGYVPNFAVVLHDIDDERKEEHLMYHSEKLALAFGLIHTPKGATIHIMK 637
Query: 308 NLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
NLR+C+DCH A KLIS + +R+IVVRD RFHC + G CSC DYW
Sbjct: 638 NLRICDDCHVAIKLISVVTSRKIVVRDAVRFHCIEGGICSCNDYW 682
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 80/162 (49%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + N+ V + L+DMY KC + A R F + E+ V +W+A++ +
Sbjct: 230 QVHAQALKKRLELNVYVGSALVDMYGKCDHVHDANRAFEVLPEKNVVSWTAVMTAYTQNE 289
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++AL F M G++PN T+ L++C + + G + + G +
Sbjct: 290 LYEDALQLFLDMEMEGVQPNEFTYAVALNSCAGLAALRTGNALG-ACVMKTGHWDHLLVS 348
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++++ S++G +++A+ +MP++ + V W ++ G H
Sbjct: 349 NALMNMYSKSGSIEDAHRVFISMPLR-DVVSWNLIITGYAHH 389
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 2/154 (1%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H Y+ ++GF V N ++ MY +C +E A +VF + F +++MI G GQ
Sbjct: 131 HGYAVKAGFAEQRYVFNAVLYMYCQCAHMEDASKVFESVSGFDAFAFNSMINGYLDRGQL 190
Query: 63 KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC 122
+L M K + V+++ +L C M G + ++ + + +
Sbjct: 191 DGSLGIVRNMTGEAEKWDYVSYVAVLGHCASMKDSVLGAQ-VHAQALKKRLELNVYVGSA 249
Query: 123 MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
+VD+ + + +A +P K N V W A++
Sbjct: 250 LVDMYGKCDHVHDANRAFEVLPEK-NVVSWTAVM 282
>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 684
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 164/352 (46%), Positives = 233/352 (66%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y ++ G R++ + LIDMY KCG ++ A RVF + +R V ++++MI GL+ HG
Sbjct: 333 IHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGL 392
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K+AL F +M++ + PN +T +G+L+ C H G V+EG +M + +GI P+IEHYG
Sbjct: 393 GKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSSILANMESLWGIAPKIEHYG 452
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C +DLL RAG+L+ A E ++ MP++P+ V+W ALL R+H N++L E+ + QL
Sbjct: 453 CYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIHHNVNLGEQIISHIGQLKSS 512
Query: 182 N-NGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ NG V+LSN+YA RWE V +RKLM + + +PG S I V+G+VHEF D+ HP
Sbjct: 513 DHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCSWIEVNGLVHEFRVADQLHP 572
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q +I ++L + GY NT V D+ E+EKE+ + HSEKLA+ FGLM+T PG
Sbjct: 573 QIVEIRNKLNEILKRLSQIGYSANTMQVSFDLNEEEKEQAVAWHSEKLAIAFGLMSTEPG 632
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IRI+KNLR CEDCH+A K IS++ REIVVRDR+RFH F G CSC D+W
Sbjct: 633 TLIRIVKNLRTCEDCHSALKTISQVYGREIVVRDRSRFHTFIEGDCSCKDFW 684
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 94/209 (44%), Gaps = 37/209 (17%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH +SGF N+ V N++I+M +E AR+VF +M ER VF+W++++ G A HG+
Sbjct: 200 VHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGE 259
Query: 62 AK-------------------------------EALTSF-NKMIEIGIKPNGVTFIGLLH 89
EALT F N + + + PN + +L
Sbjct: 260 MDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLVCVLS 319
Query: 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNG 149
AC H+G +D+G + + + GI ++D+ ++ G + A + N K +
Sbjct: 320 ACAHLGALDQG-NWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASR-VFNGICKRDV 377
Query: 150 VVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ + +++ G H L ++A R Q+
Sbjct: 378 LSFTSMISGLSYH---GLGKDALRVFYQM 403
>gi|220061995|gb|ACL79585.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
Length = 589
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 168/353 (47%), Positives = 237/353 (67%), Gaps = 7/353 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIH 59
VHE++ + G RN+RVCN+LIDMY KCG L A VF I+ E+RT+ +++A IQ ++H
Sbjct: 242 VHEFAKKFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDRTLVSYNAAIQAHSMH 301
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G +AL F++M I+P+GVT++ +L C H G VD+G R F SM + P ++H
Sbjct: 302 GHGGDALRLFDEM-PTRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMR----VAPNMKH 356
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YG +VDLL RAG L EAY+ + +MP + V+W LLG ++H ++LAE A+ +L +L
Sbjct: 357 YGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELG 416
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
+G +V+LSN+YA RW DV RVR MR+ V+K PG+S +DGV+H+F+ GD+ H
Sbjct: 417 SNVDGDYVLLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEH 476
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ ++I++ E ++ + GY P TS VL DI E+EK+ L HSEKLA+ FGL+ TPP
Sbjct: 477 PRWQEIYRALEDIVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEKLAIAFGLIATPP 536
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G +R++KNLR+C DCH KLIS+ R IV+RDR RFH F+ G CSC DYW
Sbjct: 537 GETLRVIKNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRDYW 589
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 121/281 (43%), Gaps = 31/281 (11%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G ++R+ TL+D Y KCG L AR+VF EM R V TW++++ GLA
Sbjct: 134 QLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGT 193
Query: 61 QAKEALTSFNKM------IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGII 114
+ AL F+++ + +PN VT + +L AC +G + +G + + ++G+
Sbjct: 194 EPNLALALFHRLANSFQELPSREEPNEVTIVAVLSACAQIGLLKDG-MYVHEFAKKFGLD 252
Query: 115 PQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQ 174
+ ++D+ S+ G L A + + IKP + + H +A R
Sbjct: 253 RNVRVCNSLIDMYSKCGSLSRALDVFHS--IKPEDRTLVSYNAAIQAHSMHGHGGDALRL 310
Query: 175 LDQL----DPLNNGYHVVL-----SNIYAEAERWEDVARVRKLMRNLG----VKKTPGWS 221
D++ +P Y VL S + + R + RV M++ G + G
Sbjct: 311 FDEMPTRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMRVAPNMKHYGTIVDLLGRAGRL 370
Query: 222 SITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYI 262
+ D V+ D +W+ LL K+ G +
Sbjct: 371 TEAYDTVISMPFPAD---------IVLWQTLLGAAKMHGVV 402
>gi|222632633|gb|EEE64765.1| hypothetical protein OsJ_19621 [Oryza sativa Japonica Group]
Length = 656
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 167/336 (49%), Positives = 224/336 (66%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
VCN L++MY K G +E ARRVF+ M R V +W+++I G A HG+A+EA+ +F+ M+
Sbjct: 321 VCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAE 380
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
P+ VTFIG+L AC +G VDEG + M E G+ P EHY CMV LL R G L EA
Sbjct: 381 EVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMVGLLCRVGRLDEA 440
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
FI + I + V W +LL C+V++N L + Q+ QL P + G +V+LSN+YA+A
Sbjct: 441 ERFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQLKPKDVGTYVLLSNMYAKA 500
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGM 256
RW+ V +VR+LMR LGV+K PG S I V VH F + D+ HP E+I + ++L+D +
Sbjct: 501 NRWDGVVKVRRLMRELGVRKEPGVSWIQVGSEVHVFTSEDKKHPYMEQITKKLQELIDKI 560
Query: 257 KLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCH 316
K+ GY+PN +V L D+E+++KE+ L HSEKLAL FGL+ TP G IRIMKN+R+C+DCH
Sbjct: 561 KVIGYVPNIAVALHDVEDEQKEEHLMYHSEKLALAFGLIRTPKGEAIRIMKNVRICDDCH 620
Query: 317 AAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
A KLIS R IVVRD RFHC + G CSC DYW
Sbjct: 621 VAIKLISLATGRRIVVRDTVRFHCIEDGVCSCDDYW 656
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 84/173 (48%), Gaps = 6/173 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + N+ V + L+DMY KC A RVF + E+ + +W+A++ +
Sbjct: 204 QVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNE 263
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM--TTEYGIIPQIE 118
++AL F M G++PN T+ L++C + + G T +G++P
Sbjct: 264 LFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPVCN 323
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
++++ S++G +++A +MP + + V W +++ G H A EA
Sbjct: 324 ---ALMNMYSKSGSVEDARRVFLSMPCR-DVVSWNSIIIGYAHHGRAREAMEA 372
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 105/250 (42%), Gaps = 24/250 (9%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N LI +YVKCG L AR+VF M R + + ++ G A G+ ++AL + ++ + G+
Sbjct: 54 NNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGYASSGRHRDAL-ALLRVADFGL- 111
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
N + A H+ D GR+ + + G+ ++ + + + EA +
Sbjct: 112 -NEYVLSSAVAATAHVRSYDMGRQ-CHGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVK 169
Query: 139 FIRNMPIKPNGV---VWGALLGGCRVHKNIDLAEEASRQ-LDQLDPLNNGYHVVLSNIYA 194
+ + K + V +LG C K + L + Q L + LN L ++Y
Sbjct: 170 YSKKHGEKCRAMGSCVICRVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYG 229
Query: 195 EAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLD 254
+ + + RV +++ K W++I T ++F+ +L
Sbjct: 230 KCDFPHEANRVFEVLPE---KNIVSWTAIM-------------TAYTQNELFEDALQLFL 273
Query: 255 GMKLKGYIPN 264
M+++G PN
Sbjct: 274 DMEMEGVRPN 283
>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 158/343 (46%), Positives = 242/343 (70%), Gaps = 4/343 (1%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ + ++L+DMY KCG L A++VF M + + +W++MI LA+HG+ + AL F++++
Sbjct: 263 DVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILALAMHGRGQAALQCFSRLV 322
Query: 74 EI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E+ PN VTF+G+L AC H G V +GR++F M +Y I P++EHYGC+VDLLSR+GF
Sbjct: 323 EMEKFLPNSVTFVGVLSACNHGGMVADGRKYFDMMVNDYKIEPRLEHYGCLVDLLSRSGF 382
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGC-RVHKNIDLAEEASRQLDQLD-PLNNGYHVVLS 190
+ EA E + NM IKP+ V+W +LL C + + ++L+EE + ++ Q + +++G +V+LS
Sbjct: 383 IDEALELVANMHIKPDAVIWRSLLDACYKQNAGVELSEEVAFKILQSEKTISSGVYVMLS 442
Query: 191 NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWE 250
+YA A +W DV +RK+M ++GV K PG SSI +DG+ HEF AGD +HP+ ++I+ + +
Sbjct: 443 RVYASARQWNDVGIIRKVMTDMGVTKEPGCSSIEIDGISHEFFAGDTSHPRIKEIYGVID 502
Query: 251 KLLDGMKLKGYIPNTS-VVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNL 309
+ + ++ +GY P+ S ++D + K++ L HSE+LA+ FGL+N PGTP+RI KNL
Sbjct: 503 LIEEKLERRGYSPDCSQATMVDEPDNIKQQSLKLHSERLAIAFGLLNLKPGTPVRIFKNL 562
Query: 310 RVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
RVC DCH KLISEI N EI++RDRNRFH F+ G CSC D+W
Sbjct: 563 RVCNDCHQVTKLISEIFNVEIIMRDRNRFHHFKHGMCSCMDFW 605
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 4/155 (2%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G ++ V N+LI +Y CGCL A +VF +M R++ +W+ MI G + AL F
Sbjct: 156 GLDLDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMIDAYVQSGLFENALKLF 215
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR-RFFYSMTTEYGIIP-QIEHYGCMVDLL 127
+M + +P+G T ++ AC +G + G Y + G + + +VD+
Sbjct: 216 VEM-QNSFEPDGYTMQSIVSACAGIGALSLGMWAHAYVLRKASGAMAGDVLINSSLVDMY 274
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
S+ G L+ A + MP K + W +++ +H
Sbjct: 275 SKCGSLRMAQQVFETMP-KHDLNSWNSMILALAMH 308
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKE-ALTSFNKMIEIG- 76
++LID C RVF +++ F W+ +I A KE A+ F +M+E G
Sbjct: 69 SSLIDFDYAC-------RVFNQIDNPNSFMWNTLIGACARSLDRKEQAIEIFYRMLEEGS 121
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
++P+ TF LL AC ++ + EGR+ ++ + G+ + ++ L + G L A
Sbjct: 122 VEPDKHTFPFLLKACAYVFALSEGRQ-AHAQIFKLGLDLDVYVGNSLIHLYASCGCLSMA 180
Query: 137 YEFIRNMPIKPNGVVWGALLGG 158
+ MP++ + V W ++
Sbjct: 181 LKVFEKMPLR-SLVSWNVMIDA 201
>gi|77548549|gb|ABA91346.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 624
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 155/351 (44%), Positives = 231/351 (65%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H Y+ + N V L++MY CG L+ A +VF +R ++AM+ GLA+HG
Sbjct: 274 AHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGH 333
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ AL+ F++M G+ +GVT + ++ AC H G VDEG +F M E+GI P IEHYG
Sbjct: 334 GRAALSLFDRMHGEGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYG 393
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+LSRAG L +A + I MPI PN ++ +L+ C +H ++L ++ +L +L+P
Sbjct: 394 CMVDMLSRAGRLNDAEKLIHGMPIVPNAAIYRSLIRACGIHGKLELGKKMIAELMRLEPD 453
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G HV++SN YA RW+D + RK M+++G+ K+PG S + ++GV+HEF+ GD+THP
Sbjct: 454 DSGNHVLISNFYATTNRWDDAKKARKEMKSMGIDKSPGSSFVDINGVLHEFLVGDKTHPA 513
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I+ M E + + G+ +TS L D+EE++K L HSE+LA+ F L+ + PG
Sbjct: 514 SKEIYAMVEDIETRLSECGHRSSTSSALFDVEEEDKADALSYHSERLAIAFALIASNPGA 573
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVC DCH + KL+S + REIV+RDR RFH F+ G CSCGD+W
Sbjct: 574 PIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW 624
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 20 TLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLA---------IHGQAKEALTSFN 70
L+D++ +CG + R+VF + + W+A++ A A L F
Sbjct: 182 ALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACASSAADAILEMFV 241
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEG 100
+M+ + IKPN +T + ++ ACG +G V G
Sbjct: 242 RMLSLAIKPNEITLVAVIGACGELGAVSHG 271
>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
Length = 869
Score = 340 bits (873), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 166/353 (47%), Positives = 220/353 (62%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ + +I V + L+DMY KCGCL +R VF + +R V TW+ +I +HG
Sbjct: 517 IHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHGL 576
Query: 62 AKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA+ F++M+ KPN VTFI L AC H G VD G F+SM +G+ P + +
Sbjct: 577 GDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLH 636
Query: 121 GCMVDLLSRAGFLQEAYEFIRNM-PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
C VD+L RAG L EAY I +M P + W + LG CR+H+N+ L E A+ +L QL+
Sbjct: 637 ACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQLE 696
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P ++V+L NIY+ A WE + VR MR GV K PG S I +DGV+H F+AG+ H
Sbjct: 697 PDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDGVIHRFMAGESAH 756
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P++ + + L + M+ +GY P+TS VL DIEE EK L HSEKLA+ FGL+ TPP
Sbjct: 757 PESTLVHAHMDALWERMRNQGYTPDTSSVLHDIEESEKAAILRYHSEKLAIAFGLLRTPP 816
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G IR+ KNLRVC DCH A K IS +V REIV+RD RFH F G+CSCGDYW
Sbjct: 817 GATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFVDGACSCGDYW 869
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 125/315 (39%), Gaps = 43/315 (13%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y + G N V N L+D+Y + G +E AR +F +E R V +W+ +I G + G
Sbjct: 398 VHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGH 457
Query: 62 AKEALTSFNKMIEIG------------------IKPNGVTFIGLLHACGHMGWVDEGRRF 103
+A +M + G + PN VT + LL C + +G+
Sbjct: 458 IHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEI 517
Query: 104 F-YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
Y+M + + I +VD+ ++ G L + +P K N + W L+ +H
Sbjct: 518 HGYAM--RHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLP-KRNVITWNVLIMAYGMH 574
Query: 163 KNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA--------ERWEDVARVRKLMRNLGV 214
L +EA D++ N ++ I A A +R ++ + RN GV
Sbjct: 575 G---LGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMEL--FHSMKRNHGV 629
Query: 215 KKTPGWSSITVD-----GVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVV- 268
+ TP + VD G + E + + E+ W L +L +P +
Sbjct: 630 QPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAA 689
Query: 269 --LLDIEEKEKEKFL 281
L +E E ++
Sbjct: 690 ERLFQLEPDEASHYV 704
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 82/181 (45%), Gaps = 8/181 (4%)
Query: 2 VHEYS-NQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAI 58
+H Y S N V + L+DMY + ARRVF + R + W+AM+ G A
Sbjct: 293 MHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQ 352
Query: 59 HGQAKEALTSFNKM-IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
G +EAL F +M E G+ P+ T G+L AC G+ + + G+
Sbjct: 353 AGMDEEALELFARMEAEAGVVPSETTIAGVLPACAR-SETFAGKEAVHGYVLKRGMADNP 411
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV-WGALLGGCRVHKNIDLAEEASRQLD 176
++DL +R G ++ A I+P VV W L+ GC V +I A + R++
Sbjct: 412 FVQNALMDLYARLGDMEAARWIF--AAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQ 469
Query: 177 Q 177
Q
Sbjct: 470 Q 470
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 10/149 (6%)
Query: 2 VHEYSNQSGFRRNIR--VCNTLIDMYVKCGCLEGARRVFIEMEERT-----VFTWSAMIQ 54
H ++ ++GF N L+ MY + G ++ A+ +F ++ V TW+ M+
Sbjct: 185 AHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVS 244
Query: 55 GLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGII 114
L G+ EA+ M+ G++P+G+TF L AC + + GR + + +
Sbjct: 245 LLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLA 304
Query: 115 PQIEHYGCMVDLLS---RAGFLQEAYEFI 140
+VD+ + R G + ++ +
Sbjct: 305 ANSFVASALVDMYASHERVGVARRVFDMV 333
>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Brachypodium distachyon]
Length = 647
Score = 340 bits (873), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 159/352 (45%), Positives = 228/352 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH ++G + + V +L+ MY +CGCL + RV+ +F SAMI HG
Sbjct: 296 QVHAQVIKAGVDKVVPVITSLVHMYSRCGCLGDSERVYDGYCGLDLFLLSAMISACGFHG 355
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q +A+ F +M+ G +PN VTF+ LL+AC H G DEG FF MT YG P ++HY
Sbjct: 356 QGHKAVELFKQMMNGGAEPNEVTFLALLYACSHSGLKDEGLEFFELMTKTYGFQPSVKHY 415
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL R+G L EA I +MP++ +GV+W LL C+ KN D+AE + ++ + DP
Sbjct: 416 NCIVDLLGRSGCLDEAEALILSMPVRADGVIWKTLLSACKTQKNFDMAERIAERVIESDP 475
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+LSNI A ++RW DV VRK+MR ++K PG S + G VH+F GD++HP
Sbjct: 476 RDSAPYVLLSNIRATSKRWGDVTEVRKIMREKDIRKEPGVSWVEHKGQVHQFCTGDKSHP 535
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I + ++++ ++ GY P+ ++V D+E++EKE L HSEKLA+ F +N P G
Sbjct: 536 RQGEIDEYLKEMMGKIRQCGYAPDMTMVFHDMEDEEKEVSLTHHSEKLAIAFAFLNLPEG 595
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+MKNLRVC+DCH A KLIS++ REIVVRD +RFH F+ G CSCGDYW
Sbjct: 596 VPIRVMKNLRVCDDCHVAIKLISQVTGREIVVRDVSRFHHFRDGRCSCGDYW 647
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 85/175 (48%), Gaps = 2/175 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y +SG ++ V N+L MY++CGCL V + T+ +++ I G +G
Sbjct: 195 QVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTIVSFNTTIAGRTQNG 254
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++ AL F+ M + + P+ VTF+ + C + + +G++ ++ + G+ +
Sbjct: 255 DSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQ-VHAQVIKAGVDKVVPVI 313
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
+V + SR G L ++ E + + + + A++ C H A E +Q+
Sbjct: 314 TSLVHMYSRCGCLGDS-ERVYDGYCGLDLFLLSAMISACGFHGQGHKAVELFKQM 367
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+RN+ N LI +K G L AR +F +M R V TW+AM+ GL G +++L F
Sbjct: 105 KRNVMSWNILIGGCIKNGDLGSARELFDKMPTRNVATWNAMVAGLTNVGLDEDSLQFFLA 164
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M G+ P+ + C + V GR+ ++ G+ + + + R G
Sbjct: 165 MRREGMHPDEFGLGSVFRCCAGLLDVVSGRQ-VHAYVVRSGMDSDMCVGNSLAHMYMRCG 223
Query: 132 FLQEAYEFIRNMP 144
L E +R +P
Sbjct: 224 CLAEGEAVLRALP 236
>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
Length = 1111
Score = 340 bits (873), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 157/343 (45%), Positives = 240/343 (69%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H Y ++ + +R+ TL+D+Y KCG ++ A VF MEE+ V+TWS+ + GLA++G
Sbjct: 270 AHSYIERNKIKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLAMNGF 329
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++ L F+ M + G+ PN VTF+ +L C +G+VDEG++ F SM E+GI PQ++HYG
Sbjct: 330 GEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQLDHYG 389
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDL +RAG L++A I+ MP+K + VW +LL R++KN++L AS+++ +L+
Sbjct: 390 CLVDLYARAGRLEDAVSIIQQMPMKAHAAVWSSLLHASRMYKNLELGVLASKKMLELETS 449
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +V+LSNIYA+++ W++V+ VR+ M++ GV+K PG S + V+G VHEF GD++HP+
Sbjct: 450 NHGAYVLLSNIYADSDDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPK 509
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I +W+ + ++L GY +T+ V+ DI+E+EKE L HSEK A+ FG+M+
Sbjct: 510 YNEIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKADV 569
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAG 344
PIRI+KNLRVC DCH +IS+I NREI+VRDRNRFH F+ G
Sbjct: 570 PIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDG 612
Score = 321 bits (822), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 150/344 (43%), Positives = 222/344 (64%), Gaps = 1/344 (0%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF N + L+D+Y K G LE + VF+E+ W+AM+ A HG ++A+ F
Sbjct: 768 GFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHF 827
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
M+ G+ P+ VTF LL+AC H G V+EGR +F +M+ Y I P+++HY CMVDL+ R
Sbjct: 828 ELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGR 887
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
+G LQ+AY I+ MP++P+ VWGALLG CRV+K+ L +A+++L +L+P + +++L
Sbjct: 888 SGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGRNYIML 947
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
SNIY+ + W+D +R+R LM+ G+ + G+S I +H+FV GD +HP++EKI +
Sbjct: 948 SNIYSASGLWKDASRIRNLMKQKGLVRASGYSYIEHGNKIHKFVVGDWSHPESEKIQKKL 1007
Query: 250 EKLLDGMKLK-GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKN 308
+++ MK + G+ T VL D++E KE+ + +HSEK+A+ FGL+ P PI I KN
Sbjct: 1008 KEIRKKMKSELGFKSRTEFVLHDVDEDVKEEMINQHSEKIAMAFGLLVISPMEPIIIRKN 1067
Query: 309 LRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
LR+C DCH K IS I R I++RD RFH F GSCSC DYW
Sbjct: 1068 LRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLEGSCSCRDYW 1111
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 103/234 (44%), Gaps = 46/234 (19%)
Query: 17 VCNT-LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEI 75
VC T ++ +CG + AR++F M E+ W+AMI G A G+++EAL F+ M
Sbjct: 183 VCRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLE 242
Query: 76 GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE 135
G+K NGV+ I +L AC +G +D+G R+ +S I + +VDL ++ G + +
Sbjct: 243 GVKVNGVSMISVLSACTQLGALDQG-RWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDK 301
Query: 136 AYEFIRNMP----------------------------------IKPNGVVWGALLGGCRV 161
A E M + PN V + ++L GC V
Sbjct: 302 AMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSV 361
Query: 162 HKNIDLAEEASRQLDQL------DPLNNGYHVVLSNIYAEAERWEDVARVRKLM 209
+ +E + D + +P + Y L ++YA A R ED + + M
Sbjct: 362 ---VGFVDEGQKHFDSMRNEFGIEPQLDHYG-CLVDLYARAGRLEDAVSIIQQM 411
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 77/161 (47%), Gaps = 2/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +SG ++V N L+++Y K G L + ++F ++ + + +W+ MI +G
Sbjct: 659 IHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGL 718
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+E L FN +G+KP+ TF+ +L C +G V + + + G
Sbjct: 719 AEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQG-IHGLIMFCGFNANTCITT 777
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++DL ++ G L+++ + P+ + W A+L H
Sbjct: 778 ALLDLYAKLGRLEDSSTVFLEIT-SPDSMAWTAMLAAYATH 817
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
E+G +PN VTF+ ++ AC H G +EG + + + G++ +++ +++L + G L
Sbjct: 630 EVGFRPNEVTFLSMISACVHGGNKEEG-VCIHGLVMKSGVLEEVKVVNALMNLYGKTGDL 688
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
+ + ++ +K N V W ++ +H LAEE
Sbjct: 689 ISSCKLFEDLSVK-NLVSWNTMI---VIHLQNGLAEEG 722
>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
[Vitis vinifera]
gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
Length = 652
Score = 340 bits (873), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 229/352 (65%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +S + + V N+L+DMY KCG ++ RRVF M+ + + +W+ +I G AI+G+
Sbjct: 301 IHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGR 360
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ SF +MI G P+G+TFI LL C H G D+G R F M +YGI P +EHY
Sbjct: 361 MTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDYGISPTVEHYA 420
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VD+L RAG ++EA E ++NMP KP G +WG+LL CR+H N+ LAE +++L +L+P
Sbjct: 421 CLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFELEPN 480
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V+LSNIYA A WE V VR+ M G+ K G S + + +H FVAG +
Sbjct: 481 NAGNYVMLSNIYANAGMWESVKVVREFMEKRGMTKEAGCSWLQIKSKIHTFVAGGSNEFR 540
Query: 242 AEKIF-QMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ ++W++L++ M+ GY+P+T VVL D+ E+ + ++ HSE+LA F L+NT G
Sbjct: 541 NSVEYKKVWKRLMEAMEEVGYVPDTGVVLHDVSEEMRAMWVCGHSERLATMFALINTASG 600
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH+ K +S++ R IV+RD NRFH F+ G CSC DYW
Sbjct: 601 MPIRITKNLRVCVDCHSWVKTLSKVTGRVIVLRDTNRFHHFKDGVCSCKDYW 652
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 115/268 (42%), Gaps = 12/268 (4%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V N L+ +Y + GC + A RVF M R V +W+++I GL EA+ +F M G
Sbjct: 215 VNNALLRLYSEDGCFDEALRVFDGMPHRNVVSWNSLIAGLVKKDGVFEAIEAFRIMQGKG 274
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
+ + VT +L C + + G+ +++ + P +VD+ ++ G +
Sbjct: 275 MGFSWVTLTTILPVCARVTALGSGKE-IHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYC 333
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL--DQLDPLNNGYHVVLSNIYA 194
M K + W L+ G ++ + A E+ +++ P + +LS +
Sbjct: 334 RRVFNGMQGK-DLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSGC-S 391
Query: 195 EAERWEDVARVRKLMR-NLGVKKTPGWSSITVD-----GVVHEFVAGDETHPQAEKIFQM 248
A +D R+ ++M+ + G+ T + VD G + E + + P + +
Sbjct: 392 HAGLADDGCRLFEMMKMDYGISPTVEHYACLVDVLGRAGRIKEALEIVKNMP-FKPTGSI 450
Query: 249 WEKLLDGMKLKGYIPNTSVVLLDIEEKE 276
W LL+ +L G +P V + E E
Sbjct: 451 WGSLLNSCRLHGNVPLAEAVAKRLFELE 478
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 5/156 (3%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVF---TWSAMIQGLAIHGQAKEALTSFNKMIEIGI 77
LI ++ C ++ ARRVF + E W AM G + +G KEAL + +M+
Sbjct: 115 LITLFSVCRRVDEARRVFEDGGEDVDLPESVWVAMGIGYSRNGYPKEALLLYYEMVCQFG 174
Query: 78 KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAY 137
+ F L AC +G + GR + Q+ + ++ L S G EA
Sbjct: 175 QLGNFAFSMALKACSDLGDLQTGRAVHAQVLKATEDPDQVVN-NALLRLYSEDGCFDEAL 233
Query: 138 EFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR 173
MP + N V W +L+ G + A EA R
Sbjct: 234 RVFDGMPHR-NVVSWNSLIAGLVKKDGVFEAIEAFR 268
>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
Length = 781
Score = 340 bits (873), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 162/353 (45%), Positives = 233/353 (66%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++ FR + V LI+MY KCG + A VF +M +R + W++M+ A HG
Sbjct: 429 QIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHG 488
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
E L FN+M G+K + V+F+ +L A H G V +G ++F +M ++ I P E Y
Sbjct: 489 YYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELY 548
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMP-IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
GC+VDLL RAG +QEA + + + P+G++W LLG CR H D A+ A+ Q+ + D
Sbjct: 549 GCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERD 608
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P ++G +VVLSN+YA A W+ V R+RKLMR+ GVKK PG SSI + VHEF+ GD +H
Sbjct: 609 PSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSH 668
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ I+ + L M+ GYIP+T ++L D+E++ KE L+ HSE+LA+ FGL++TPP
Sbjct: 669 PRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLISTPP 728
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GTP+R++KNLRVC DCH A K IS++ REI+VRD +RFH F+ G CSC DYW
Sbjct: 729 GTPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 781
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 4/182 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH + GF +N VC LI MY +CG + A++VF +E + VF W+ MI G
Sbjct: 25 RVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQG 84
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
AL F +M E + P VT++ +L+AC + +G + + G +
Sbjct: 85 DYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGME-IHGQILQQGFEGDVFVG 143
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR--QLDQL 178
++++ ++ G ++ A++ + + + + V W A++ C H LA R QLD +
Sbjct: 144 TALINMYNKCGSVRGAWDSFKRLEHR-DVVSWTAMIAACVQHDQFALARWLYRRMQLDGV 202
Query: 179 DP 180
P
Sbjct: 203 VP 204
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 100/227 (44%), Gaps = 4/227 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+HE ++G+ R+ V L+ +Y +C A ++F++M + V TW+ M A +G
Sbjct: 329 IHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGF 388
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEAL F +M G +P T + +L C H+ + +GR+ +S E ++
Sbjct: 389 RKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQ-IHSHIIENRFRMEMVVET 447
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNID--LAEEASRQLDQLD 179
++++ + G + EA M K + +VW ++LG H D L QLD +
Sbjct: 448 ALINMYGKCGKMAEAMSVFEKMA-KRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVK 506
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD 226
+ VLS + + ++++ + TP VD
Sbjct: 507 ADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVD 553
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 2/155 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Q GF ++ V LI+MY KCG + GA F +E R V +W+AMI H Q
Sbjct: 127 IHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQ 186
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A + +M G+ PN +T + +A G ++ EG +F Y + + + +
Sbjct: 187 FALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEG-KFVYGLVSSGVMESDVRVMN 245
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
V++ AG L +A +M + + V W ++
Sbjct: 246 SAVNMFGNAGLLGDARRLFEDM-VDRDVVTWNIVI 279
>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
Length = 565
Score = 340 bits (873), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 163/343 (47%), Positives = 231/343 (67%), Gaps = 4/343 (1%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ V L+DMY KCG LE A++VF M R V +W+++I G A+HG+AK AL F +M+
Sbjct: 223 DVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNSIILGFAVHGKAKAALDYFVRMV 282
Query: 74 EI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
++ I PN +TF+G+L AC H G VDEG +F MT EY + P + HYGC+VDL +RAG
Sbjct: 283 KVEKIVPNSITFVGVLSACNHSGMVDEGLMYFEMMTKEYNVEPSLVHYGCLVDLYARAGH 342
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGC-RVHKNIDLAEEASRQLDQLD-PLNNGYHVVLS 190
+QEA + MPIKP+ V+W +LL C + H +++L+EE ++Q+ + + + G +V+LS
Sbjct: 343 IQEALNVVSEMPIKPDAVIWRSLLDACYKQHASVELSEEMAKQIFESNGSVCGGAYVLLS 402
Query: 191 NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWE 250
+YA A RW DV +RKLM + GV K PG S I ++G HEF AGD HPQ++ I++
Sbjct: 403 KVYASASRWNDVGLLRKLMNDKGVSKKPGCSLIEINGAAHEFFAGDTNHPQSKDIYKFMN 462
Query: 251 KLLDGMKLKGYIPNTS-VVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNL 309
++ + ++ GY+P+ S L+D + K+ + HSE+LA+ FGL+N+ P PIR+ KNL
Sbjct: 463 EIQEKLESVGYLPDYSGAPLIDEINEGKQNTMRLHSERLAIAFGLLNSKPSMPIRVFKNL 522
Query: 310 RVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
RVC DCH KLIS I N EI+VRDR RFH F+ GSCSC DYW
Sbjct: 523 RVCNDCHKVTKLISRIYNVEIIVRDRVRFHHFKDGSCSCMDYW 565
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 5/165 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM-EERTVFTWSAMIQGLAIH 59
+VH + + GF + +CN+LI Y CG LE AR+VF M E R V +W+ MI A
Sbjct: 106 QVHAHVLKLGFELDTYICNSLIHFYASCGYLETARKVFDRMCEWRNVVSWNVMIDSYAKV 165
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR--RFFYSMTTEYGIIPQI 117
G L F +M+++ +P+ T ++ ACG +G + G F + ++ +
Sbjct: 166 GDYDIVLIMFCEMMKV-YEPDCYTMQSVIRACGGLGSLSLGMWVHAFVLKKCDKNVVCDV 224
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
C+VD+ + G L+ A + M + + W +++ G VH
Sbjct: 225 LVNTCLVDMYCKCGSLEIAKQVFEGMSYR-DVSSWNSIILGFAVH 268
>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 558
Score = 340 bits (873), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 162/351 (46%), Positives = 227/351 (64%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V + + GF ++ + LIDM+ +CG ++ + VF +M R V TW+A+I GL IHG+
Sbjct: 208 VRAFIGRLGFGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGIHGR 267
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ EAL F+ M + G++P+ VTF G+L AC H G V EG F S+ YG+ P ++HYG
Sbjct: 268 SMEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYGMDPLLDHYG 327
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+L RAG L EAY+F+ MP+KPN ++W LLG C H N+ LAE+ ++ ++
Sbjct: 328 CMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGACVNHNNLGLAEKVKAKISKISSS 387
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
NG V+LSN+Y A RW + A +R MR + K PG SSI VD +HEFV+GD +HPQ
Sbjct: 388 QNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKEPGCSSINVDQTIHEFVSGDNSHPQ 447
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+E I + ++ ++ +GY+ T VL DIEE+E+E L HSEKLA+ F +++
Sbjct: 448 SEDITKFLSSIIGDLRNRGYMMQTKNVLHDIEEEEREHSLSYHSEKLAVAFAILSMKDKR 507
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRIMKNLR+C DCH+ K IS R+I++RDRNRFH F+ G CSC DYW
Sbjct: 508 TIRIMKNLRICYDCHSFMKHISVRFERKIIIRDRNRFHHFEKGLCSCHDYW 558
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 82/162 (50%), Gaps = 3/162 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G +I V N LI +Y CG LE A +VF EM ER +WS +I +G
Sbjct: 106 LHSLIVKYGLGSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGY 165
Query: 62 AKEALTSFNKM-IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A EAL F KM +E + P+ VT + ++ A H+G ++ G R+ + G +
Sbjct: 166 ASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELG-RWVRAFIGRLGFGVSVALG 224
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ SR G + E+ M ++ N + W AL+ G +H
Sbjct: 225 TALIDMFSRCGSIDESIVVFEKMAVR-NVLTWTALINGLGIH 265
>gi|218196348|gb|EEC78775.1| hypothetical protein OsI_19008 [Oryza sativa Indica Group]
Length = 580
Score = 340 bits (872), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 168/353 (47%), Positives = 237/353 (67%), Gaps = 7/353 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIH 59
VHE++ + G RN+RVCN+LIDMY KCG L A VF I+ E+RT+ +++A IQ ++H
Sbjct: 233 VHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDRTLVSYNAAIQAHSMH 292
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G +AL F++M I+P+GVT++ +L C H G VD+G R F SM + P ++H
Sbjct: 293 GHGGDALRLFDEM-PTRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMR----VAPNMKH 347
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YG +VDLL RAG L EAY+ + +MP + V+W LLG ++H ++LAE A+ +L +L
Sbjct: 348 YGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELG 407
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
+G +V+LSN+YA RW DV RVR MR+ V+K PG+S +DGV+H+F+ GD+ H
Sbjct: 408 SNVDGDYVLLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEH 467
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ ++I++ E ++ + GY P TS VL DI E+EK+ L HSEKLA+ FGL+ TPP
Sbjct: 468 PRWQEIYRALEDIVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEKLAIAFGLIATPP 527
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G +R++KNLR+C DCH KLIS+ R IV+RDR RFH F+ G CSC DYW
Sbjct: 528 GETLRVIKNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRDYW 580
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 119/281 (42%), Gaps = 31/281 (11%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G ++R+ TL+D Y KCG L AR+VF EM R V TW++++ GLA
Sbjct: 125 QLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGT 184
Query: 61 QAKEALTSFNKM------IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGII 114
+ AL F+++ + +PN VT + L AC +G + +G + + +G+
Sbjct: 185 EPNLALALFHRLANSFQELPSREEPNEVTIVAALSACAQIGLLKDG-MYVHEFAKRFGLD 243
Query: 115 PQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQ 174
+ ++D+ S+ G L A + + IKP + + H +A R
Sbjct: 244 RNVRVCNSLIDMYSKCGSLSRALDVFHS--IKPEDRTLVSYNAAIQAHSMHGHGGDALRL 301
Query: 175 LDQL----DPLNNGYHVVL-----SNIYAEAERWEDVARVRKLMRNLG----VKKTPGWS 221
D++ +P Y VL S + + R + RV M++ G + G
Sbjct: 302 FDEMPTRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMRVAPNMKHYGTIVDLLGRAGRL 361
Query: 222 SITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYI 262
+ D V+ D +W+ LL K+ G +
Sbjct: 362 TEAYDTVISMPFPAD---------IVLWQTLLGAAKMHGVV 393
>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
Length = 708
Score = 340 bits (872), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 158/352 (44%), Positives = 230/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++G + + V L+ MY +CGCL + RVF F SAMI HG
Sbjct: 357 QIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHG 416
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++A+ F +M+ G +P+ VTF+ LL+AC H G +EG F MT YG+ P ++HY
Sbjct: 417 HGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHY 476
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL R+G L EA I +MP+ P+GV+W LL C+ KN D+AE ++++ +LDP
Sbjct: 477 TCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDP 536
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+LSNI A + RW DV+ VRK MR+ V+K PG S + + G +H+F GDE+HP
Sbjct: 537 HDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHP 596
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ ++I + E+++ ++ GY P+ S+VL D+E++EKE L HSEKLA+ F ++ P G
Sbjct: 597 RQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEG 656
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+MKNLRVC+DCH A KL+S++ REIVVRD +RFH F+ G CSC DYW
Sbjct: 657 VPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 708
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 72/136 (52%), Gaps = 1/136 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y +SG R++ V ++L MY++CGCL+ V + ++ + + +I G +G
Sbjct: 256 QVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNG 315
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++ AL F M +G+ + VTF+ + +C + + +G++ + + G+ +
Sbjct: 316 DSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQ-IHGQVMKAGVDKVVPVM 374
Query: 121 GCMVDLLSRAGFLQEA 136
C+V + SR G L ++
Sbjct: 375 TCLVHMYSRCGCLGDS 390
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 1/133 (0%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
RRN+ N L Y+K G L GAR++F EM ER V TW+AM+ GL G +E+L F
Sbjct: 166 RRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLD 225
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M G+ P+ + C + V GR+ ++ G+ + + + R G
Sbjct: 226 MRREGMHPDEFGLGSVFRCCAGLRDVVTGRQ-VHAYVVRSGLDRDMCVGSSLAHMYMRCG 284
Query: 132 FLQEAYEFIRNMP 144
LQE +R +P
Sbjct: 285 CLQEGEAVLRMLP 297
>gi|357111278|ref|XP_003557441.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Brachypodium distachyon]
Length = 551
Score = 340 bits (872), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 161/344 (46%), Positives = 236/344 (68%), Gaps = 4/344 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ + N+L+D+Y KCG +E AR+VF M ER + +W+ MI LA HG+ +E++ F++M
Sbjct: 208 RDVLINNSLVDLYGKCGAVELARQVFDRMPERDITSWNVMILTLANHGRVRESVELFDRM 267
Query: 73 IEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
PN +TF+ +L AC H G V+EGRR+F M +EYGI P+IEHYGCMVD+L+RAG
Sbjct: 268 ARAEKFVPNAITFVAVLSACNHGGMVEEGRRYFQMMVSEYGIRPRIEHYGCMVDILARAG 327
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGG-CRVHKNIDLAEEASR-QLDQLDPLNNGYHVVL 189
F++EA + + M +P+ ++W +LL C+ + ++L+E ++ LD D +G +V+L
Sbjct: 328 FIEEALDVVSGMNCRPDAIIWRSLLDACCKQNAGLELSEAMAKLALDVPDDAVSGVYVLL 387
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
S +YA A+RW DV VR+LMR G+KK PG+SSI +DG+VH+FVAGD +HP E+I++
Sbjct: 388 SQVYASAQRWNDVGMVRRLMREEGLKKEPGFSSIEMDGLVHQFVAGDTSHPLTEEIYKKL 447
Query: 250 EKLLDGMKLKGYIPNTSVV-LLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKN 308
+++ + GY PN S ++ + K L HSE+LA++FGL+ G PIRI+KN
Sbjct: 448 DEIEQRLTSSGYKPNLSAAPMVAGIDHAKGAALRLHSERLAISFGLLKATDGAPIRILKN 507
Query: 309 LRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
LRVC+DCH K+ISE+ EI+VRDR RFH F+ G+CSC DYW
Sbjct: 508 LRVCKDCHTISKIISELYGVEIIVRDRIRFHHFKDGACSCKDYW 551
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 74/177 (41%), Gaps = 15/177 (8%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
R + V N+L+ +Y CG A +F + +++ +W+ + LA +G AL F +
Sbjct: 93 RAHTVVANSLLHLYASCGLPAAALALFRRIPAKSLVSWNTAVDALAGNGDHIAALDLFRE 152
Query: 72 M-----IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYG-------IIPQIEH 119
+ G+ P+ T +L AC G + G + E G + +
Sbjct: 153 LQLEGAATAGLAPDAYTVQSVLGACAGAGALSLGVYAHALLLRELGGDGDGQAVSRDVLI 212
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGCRVHKNIDLAEEASR 173
+VDL + G ++ A + MP I V+ L RV ++++L + +R
Sbjct: 213 NNSLVDLYGKCGAVELARQVFDRMPERDITSWNVMILTLANHGRVRESVELFDRMAR 269
>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 646
Score = 340 bits (872), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 158/352 (44%), Positives = 230/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++G + + V L+ MY +CGCL + RVF F SAMI HG
Sbjct: 295 QIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHG 354
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++A+ F +M+ G +P+ VTF+ LL+AC H G +EG F MT YG+ P ++HY
Sbjct: 355 HGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHY 414
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL R+G L EA I +MP+ P+GV+W LL C+ KN D+AE ++++ +LDP
Sbjct: 415 TCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDP 474
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+LSNI A + RW DV+ VRK MR+ V+K PG S + + G +H+F GDE+HP
Sbjct: 475 HDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHP 534
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ ++I + E+++ ++ GY P+ S+VL D+E++EKE L HSEKLA+ F ++ P G
Sbjct: 535 RQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEG 594
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+MKNLRVC+DCH A KL+S++ REIVVRD +RFH F+ G CSC DYW
Sbjct: 595 VPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 646
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 72/136 (52%), Gaps = 1/136 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y +SG R++ V ++L MY++CGCL+ V + ++ + + +I G +G
Sbjct: 194 QVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNG 253
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++ AL F M +G+ + VTF+ + +C + + +G++ + + G+ +
Sbjct: 254 DSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQ-IHGQVMKAGVDKVVPVM 312
Query: 121 GCMVDLLSRAGFLQEA 136
C+V + SR G L ++
Sbjct: 313 TCLVHMYSRCGCLGDS 328
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 5/146 (3%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
RRN+ N L Y+K G L GAR++F EM ER V TW+AM+ GL G +E+L F
Sbjct: 104 RRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLD 163
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M G+ P+ + C + V GR+ ++ G+ + + + R G
Sbjct: 164 MRREGMHPDEFGLGSVFRCCAGLRDVVTGRQ-VHAYVVRSGLDRDMCVGSSLAHMYMRCG 222
Query: 132 FLQEAYEFIRNMP----IKPNGVVWG 153
LQE +R +P + N ++ G
Sbjct: 223 CLQEGEAVLRMLPSLSIVSCNTIIAG 248
>gi|125540774|gb|EAY87169.1| hypothetical protein OsI_08570 [Oryza sativa Indica Group]
Length = 613
Score = 340 bits (872), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 150/341 (43%), Positives = 229/341 (67%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
R N + +L+DMY KCGC+E A VF M+++ +T+SAM+ GLA+HG ++AL F+
Sbjct: 273 RLNTFMSTSLVDMYAKCGCIENAAAVFDAMDDKNAWTYSAMVSGLALHGDGRKALEVFDA 332
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M+ G +P+ ++G+L+AC G ++EG R F M E+ + P +HYGCMVDL++RAG
Sbjct: 333 MVREGHRPDAAVYVGVLNACSRAGLLEEGLRCFDRMRLEHKLTPNAQHYGCMVDLMARAG 392
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSN 191
L +A I NMP P W +LL CR+H N++LAE A ++L++L N G +++LS+
Sbjct: 393 RLDDARALIGNMPTGPTDTAWRSLLNACRIHGNLELAERALQELERLGATNAGDYIILSD 452
Query: 192 IYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEK 251
++A A + A R + G+ + PG+S++ V G H FV+ D +HP+A+ I++M +
Sbjct: 453 MHARAHNRDAAAARRTEAVDRGLAQAPGYSAVEVHGATHRFVSQDRSHPRADDIYEMLHQ 512
Query: 252 LLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRV 311
+ ++ +GY P+TS + LD E+EK + + HS+KLA+ FGL++TP G P+R++ NLR+
Sbjct: 513 MEWQLRFEGYTPDTSELALDAGEEEKRRVVAAHSQKLAMAFGLLSTPEGAPVRVVTNLRM 572
Query: 312 CEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
++CHA LISEI REIVVRDRNRFH F+ G+CSCG+YW
Sbjct: 573 SKECHAYSALISEIFGREIVVRDRNRFHRFKRGACSCGNYW 613
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 4/157 (2%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME--ERTVFTWSAMIQGLAIHGQAKEALT 67
GF+R+ N+LI Y KCG + ARR F +ME E+T +WSA++ G+ E +
Sbjct: 168 GFQRDEHSQNSLISFYGKCGEADLARRAFEQMEDDEQTTASWSALLAAYTRAGRWAECVE 227
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
SF M+ G +P+ + + L AC H+G D GR ++ + +VD+
Sbjct: 228 SFGAMVRAGWRPDESSMVSALSACAHLGAHDVGRSIHCALLRNTARLNTFMSTS-LVDMY 286
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKN 164
++ G ++ A M K N + A++ G +H +
Sbjct: 287 AKCGCIENAAAVFDAMDDK-NAWTYSAMVSGLALHGD 322
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHG-----QAKEALTSFNKMIEIGIKPNGVT 83
G + A +F +++ F ++ +++G G AL F M++ G++P+ T
Sbjct: 81 GSMAYAASIFAALDDPEAFDYNTLMRGYVAGGGGGGRDPAAALRLFVDMVDDGVEPDSYT 140
Query: 84 FIGLLHACGHMGWVDEGRRF 103
F + AC +G + EGR+
Sbjct: 141 FPFVFKACAQLGALQEGRQL 160
>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Brachypodium distachyon]
Length = 689
Score = 340 bits (872), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 171/352 (48%), Positives = 229/352 (65%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + +S NI V + L+DMY KCG +E A +VF++M ER + TW+AMI G A G
Sbjct: 338 LHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMPERNLVTWNAMIGGYAHIGD 397
Query: 62 AKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A+ AL F+ MI G PN +T + ++ AC G +G F +M +G+ P+ EHY
Sbjct: 398 AQNALAVFDAMIRSGGTSPNHITLVNVITACSRGGLTKDGYELFDTMRERFGVEPRTEHY 457
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL RAG + AYE I+ MP++P+ VWGALLG C++H +L AS +L +LDP
Sbjct: 458 ACVVDLLGRAGMEERAYEIIQRMPMRPSISVWGALLGACKMHGKTELGRIASEKLFELDP 517
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++G HV+LSN+ A A RW + VRK M+N+G+KK PG S IT VVH F A D H
Sbjct: 518 QDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKEPGCSWITWKNVVHVFYAKDTKHD 577
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I + KL M+ GY+P+T L D+EE+EKE +++HSEKLAL FGL++ PP
Sbjct: 578 RNSEIQALLAKLKKQMQASGYMPDTQYSLYDVEEEEKETEVFQHSEKLALAFGLIHIPPS 637
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLR+C DCH AFK +S IV REI+VRD NRFH F+ CSC DYW
Sbjct: 638 VPIRITKNLRICVDCHRAFKFVSGIVGREIIVRDNNRFHYFKQFECSCKDYW 689
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 7/200 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H + GF ++ V N ++D Y KC C AR VF M R +W +MI A HG
Sbjct: 236 QFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHG 295
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++AL + G +P +L C + ++ GR +++ I I
Sbjct: 296 AEEDALAVYMGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRA-LHAVAVRSCIDANIFVA 354
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL-- 178
+VD+ + G +++A + +MP + N V W A++GG + +I A+ A D +
Sbjct: 355 SALVDMYGKCGGVEDAEQVFLDMPER-NLVTWNAMIGG---YAHIGDAQNALAVFDAMIR 410
Query: 179 DPLNNGYHVVLSNIYAEAER 198
+ H+ L N+ R
Sbjct: 411 SGGTSPNHITLVNVITACSR 430
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 2/135 (1%)
Query: 22 IDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNG 81
+DMY K GCL ARR+F EM R V W+A++ I G+ E ++ + E G PN
Sbjct: 156 MDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVIDGRPLETFKAYFGLREAGGMPNV 215
Query: 82 VTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIR 141
V+ +AC ++ G + F+ G + MVD + +A
Sbjct: 216 VSVCAFFNACAGAMFLSLGEQ-FHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFD 274
Query: 142 NMPIKPNGVVWGALL 156
M ++ N V W +++
Sbjct: 275 GMRVR-NSVSWCSMI 288
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 5/143 (3%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
+C L+++Y K A TV +++A I G A H + AL++F M+ +G
Sbjct: 47 ICAHLVNLYSKLDLPAAAASALASDPNPTVVSFTAFISGAAQHARPLAALSAFAAMLRVG 106
Query: 77 IKPNGVTFIGLLH--ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC-MVDLLSRAGFL 133
++PN TF AC G + +++ +G +P C +D+ + G L
Sbjct: 107 LRPNDFTFPSAFKAAACAPPRCSTVGPQ-IHALALRFGYLPGDPFVSCAAMDMYFKTGCL 165
Query: 134 QEAYEFIRNMPIKPNGVVWGALL 156
A MP + N + W A++
Sbjct: 166 GLARRLFEEMPNR-NVIAWNAVM 187
>gi|115480819|ref|NP_001064003.1| Os09g0573000 [Oryza sativa Japonica Group]
gi|113632236|dbj|BAF25917.1| Os09g0573000 [Oryza sativa Japonica Group]
Length = 555
Score = 340 bits (871), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 161/354 (45%), Positives = 232/354 (65%), Gaps = 3/354 (0%)
Query: 2 VHEY-SNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER--TVFTWSAMIQGLAI 58
H Y + F + L++MY++CG ++ A +F R V TW+ MI GLA+
Sbjct: 202 AHAYLATTCSFPITTNLATALLNMYMRCGDVQTACSLFHSTPTRHKDVHTWTVMIAGLAL 261
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+G + +AL F M + I+P+ VT +L AC H G VDEG+R M +Y + P IE
Sbjct: 262 NGFSTDALHLFTHMKDHNIQPDSVTLTAVLSACTHAGMVDEGKRILRRMPLDYHLQPTIE 321
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
HYGC VDLL RAG L+EA IR +P K + +WGALL CR H+N ++ + + ++ +L
Sbjct: 322 HYGCTVDLLGRAGLLEEALALIRAVPFKADVALWGALLVACRCHRNFEMGQMVAMEILRL 381
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
DP + G V LSN+YA A +W+ V VR M+ + K PG S + +DGVV+EF++GD +
Sbjct: 382 DPQHAGAWVFLSNVYAAAGKWDLVQEVRSSMKQHRIHKPPGSSVVELDGVVYEFLSGDHS 441
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
HPQ+++I+ M +++ + LKG+ P T +V DI+E++KE + +HSEKLA+ FGL+NT
Sbjct: 442 HPQSDQIYAMLDEIGKTLSLKGHKPATKLVTFDIDEEDKEVCISQHSEKLAVAFGLINTR 501
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G IRI+KNLR+CEDCH+ K++SE+ +R IVVRDRNRFH F++GSCSC DYW
Sbjct: 502 RGAVIRIVKNLRICEDCHSVMKVVSEVYDRVIVVRDRNRFHHFKSGSCSCLDYW 555
>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
Length = 1072
Score = 340 bits (871), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 157/351 (44%), Positives = 225/351 (64%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH G R++ + L DMY KCG L+ A VF M ER++ +WS MI G +HGQ
Sbjct: 723 VHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQ 782
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++ FN+M+ GIKPN +TF+ +L AC H G V+EG+ +F SM+ E+G+ P+ +H+
Sbjct: 783 INATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMS-EFGVEPKHDHFA 841
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLLSRAG L AY+ I ++P N +WGALL GCR+HK ID+ + + L +D
Sbjct: 842 CMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTA 901
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ GY+ +LSNIYAE W+ +VR +M++ G++K PG+S+I +D ++ F GD +H Q
Sbjct: 902 DTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQ 961
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ I++ E + + Y ++ + KE + HSEKLA+ FG++NT PGT
Sbjct: 962 TKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVSHSEKLAIAFGIINTRPGT 1021
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+RI KNLRVC DCH+ K+ S+I REI++RD NRFHCF+ GSCSC DYW
Sbjct: 1022 TLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 1072
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 96/166 (57%), Gaps = 3/166 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y ++G N V N LIDMY KCG + A ++F +++E+++ TW++MI G + +G
Sbjct: 622 QIHGYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNG 680
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EA+T F++M +K + +TF+ ++ AC H+G++++G+ + + YG+
Sbjct: 681 YSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIM-YGLRKDSYLD 739
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNID 166
+ D+ S+ G LQ A+ M + + V W ++ G +H I+
Sbjct: 740 TALTDMYSKCGELQMAHGVFDRMSER-SIVSWSVMIAGYGMHGQIN 784
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 70/144 (48%), Gaps = 13/144 (9%)
Query: 20 TLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP 79
L+++Y G L +VF ++E+T+ +W+ +I +GQ +EAL F +M G+ P
Sbjct: 540 ALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMP 599
Query: 80 NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY-----GCMVDLLSRAGFLQ 134
+ + L ACG + + G + +G I + ++ ++D+ ++ GF+
Sbjct: 600 DSYSLASSLSACGTISFSQLGAQI-------HGYIIKTGNFNDFVQNALIDMYAKCGFVH 652
Query: 135 EAYEFIRNMPIKPNGVVWGALLGG 158
A + + K + V W +++ G
Sbjct: 653 SANKMFEKIKEK-SLVTWNSMICG 675
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 81/210 (38%), Gaps = 56/210 (26%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQ------ 54
++H + +G R+ LI+ Y + G E ++RVF + F W +I+
Sbjct: 366 QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGG 425
Query: 55 ------------------------------------GLAI---HGQAKEALTSFNKMIEI 75
L++ +GQA E L F++MI
Sbjct: 426 FFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMISE 485
Query: 76 GIKPNGVTFIGLLHAC--------GHMGWVDEGRRFFYSMTTEYGIIPQIEHYG-CMVDL 126
++P+ VT + + AC G +G V EGR + + P+++ G +++L
Sbjct: 486 AVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRS-VHGFVIRRAMDPELDFLGPALMEL 544
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
+ G L++ ++ + K + W L+
Sbjct: 545 YADTGNLRDCHKVFETIKEK-TILSWNTLI 573
>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
Length = 799
Score = 340 bits (871), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 164/335 (48%), Positives = 227/335 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Q +I + L+DMY+KCG ++ A VF M +R V TW+AMI GLA +G
Sbjct: 394 LHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGM 453
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K AL F +M G +PN V++I +L AC H ++EGR +F M Y I PQIEHYG
Sbjct: 454 GKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYG 513
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CM+DLL R+G L EA + ++ MPI+PN V+W ++L CRVHK+IDLA+ A+ L +L+P
Sbjct: 514 CMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPD 573
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+G +V L NIY ++ +WE+ +++R LM VKKT G+SSITV G VH+FV D++HP+
Sbjct: 574 EDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPR 633
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I M E++ +K GY P TS + +D++E+EKE+ L HSEKLA+ FGL+N P
Sbjct: 634 ILEIIAMLEEISHRLKSLGYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNL 693
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRN 336
P+ I KNLRVCEDCH+A KLIS + NREI+VRDR+
Sbjct: 694 PVHIRKNLRVCEDCHSAIKLISRLWNREIIVRDRS 728
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 84/205 (40%), Gaps = 37/205 (18%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG---------------- 60
V N+LI MY++ G ARR F E+ + W+ +I GLA G
Sbjct: 144 VSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRD 203
Query: 61 ---------------QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFY 105
+A+EA+ F M+ GI P+ VT I +L AC + ++ GR +
Sbjct: 204 VISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRS-LH 262
Query: 106 SMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNI 165
+ E G+ ++D+ ++ G A + + P W A++ G H ++
Sbjct: 263 LLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHV 322
Query: 166 DLA-----EEASRQLDQLDPLNNGY 185
D+A E R + + + GY
Sbjct: 323 DVARSLFDEMEVRDIITFNSMMTGY 347
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 4/174 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N +ID Y K G ++ AR +F EME R + T+++M+ G GQ +EAL F M ++
Sbjct: 310 NAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLR 369
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
+ T + LL AC +G + +GR ++ + + I ++D+ + G + EA
Sbjct: 370 VDNFTVVNLLTACASLGALQQGRA-LHACIEQRLVEADIYLGTALLDMYMKCGRVDEATI 428
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL--DQLDPLNNGYHVVLS 190
+ M K + W A++ G + A E Q+ D P + Y VL+
Sbjct: 429 VFQRMG-KRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLT 481
>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g03880, mitochondrial; Flags: Precursor
gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 630
Score = 340 bits (871), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 163/342 (47%), Positives = 225/342 (65%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
+ +++ + N L+DMY KCG LE A RVF +M+ER V TWS MI GLA +G ++EAL F
Sbjct: 289 YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFE 348
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
+M G KPN +T +G+L AC H G +++G +F SM YGI P EHYGCM+DLL +A
Sbjct: 349 RMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKA 408
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190
G L +A + + M +P+ V W LLG CRV +N+ LAE A++++ LDP + G + +LS
Sbjct: 409 GKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLS 468
Query: 191 NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWE 250
NIYA +++W+ V +R MR+ G+KK PG S I V+ +H F+ GD +HPQ ++ +
Sbjct: 469 NIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLN 528
Query: 251 KLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLR 310
+L+ + GY+P T+ VL D+E ++ E L HSEKLAL FGLM P IRI KNLR
Sbjct: 529 QLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLR 588
Query: 311 VCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+C DCH KL S++ R IV+RD R+H FQ G CSCGDYW
Sbjct: 589 ICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLA---IH 59
H Y N G R + + N LI+MYVK L A ++F +M +R V +W+ MI + IH
Sbjct: 86 HLYFN--GHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIH 143
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+A E L M+ ++PN T+ +L +C M V R + + G+ +
Sbjct: 144 QKALELLV---LMLRDNVRPNVYTYSSVLRSCNGMSDV----RMLHCGIIKEGLESDVFV 196
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
++D+ ++ G ++A M + + +VW +++GG + D+A E +++
Sbjct: 197 RSALIDVFAKLGEPEDALSVFDEM-VTGDAIVWNSIIGGFAQNSRSDVALELFKRM 251
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 10/154 (6%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
+ G ++ V + LID++ K G E A VF EM W+++I G A + ++ AL
Sbjct: 187 KEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALE 246
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY---GCMV 124
F +M G T +L AC + ++ G M I+ + +V
Sbjct: 247 LFKRMKRAGFIAEQATLTSVLRACTGLALLELG------MQAHVHIVKYDQDLILNNALV 300
Query: 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
D+ + G L++A M + + + W ++ G
Sbjct: 301 DMYCKCGSLEDALRVFNQMK-ERDVITWSTMISG 333
>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Vitis vinifera]
Length = 607
Score = 340 bits (871), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 164/343 (47%), Positives = 233/343 (67%), Gaps = 4/343 (1%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ + +L+DMY KCG LE A ++F M +R V +W++MI G + HG+ AL F M+
Sbjct: 265 DVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMV 324
Query: 74 EI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ PN +TF+G+L AC H G V EGRR+F M TEY I P++EHYGC+VDLL+RAG
Sbjct: 325 RTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGL 384
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGG-CRVHKNIDLAEEASRQ-LDQLDPLNNGYHVVLS 190
+ EA + + NMP++P+ V+W +LL C+ + ++L+EE +R+ L+ + +G +V+LS
Sbjct: 385 IDEALDVVSNMPMRPDLVIWRSLLDACCKQNAGVELSEEMARRVLEAEGGVCSGVYVLLS 444
Query: 191 NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWE 250
+YA A RW DV VRKLM + GV K PG SSI +DGV HEF AGD +HPQ E+I+ +
Sbjct: 445 RVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEIDGVAHEFFAGDTSHPQTEEIYSALD 504
Query: 251 KLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYR-HSEKLALTFGLMNTPPGTPIRIMKNL 309
+ + ++ GY P++S + E + +++ R HSE+LA+ FGL+ T PG PIRI KNL
Sbjct: 505 VIEERVERVGYSPDSSQAPMVDETIDGKQYSLRLHSERLAIAFGLLKTKPGMPIRIFKNL 564
Query: 310 RVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
RVC +CH KLIS + NREI+VRDR RFH F+ G+CSC DYW
Sbjct: 565 RVCNNCHQVTKLISRVFNREIIVRDRIRFHHFKDGACSCMDYW 607
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 4/172 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + GF ++ + N+L+ Y C L+ A+ VF M ER++ +W+ +I G
Sbjct: 149 QIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFG 208
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG--RRFFYSMTTEYGIIPQIE 118
+ AL F +M + +P+G T + +AC MG + G F + + +
Sbjct: 209 EFDAALNLFGEMQKF-FEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKFDADRVNDVL 267
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
+VD+ + G L+ A + MP K + W +++ G H + A E
Sbjct: 268 LNTSLVDMYCKCGSLELALQLFHRMP-KRDVTSWNSMILGFSTHGEVAAALE 318
>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14050, mitochondrial-like [Cucumis sativus]
Length = 611
Score = 340 bits (871), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 159/344 (46%), Positives = 226/344 (65%), Gaps = 1/344 (0%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF + + N L+DMY KC + A+ +F M + V +W+++I G A HG+A+EALT +
Sbjct: 268 GFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLY 327
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
++M+ IKPN VTF+GLL+AC H G V GR F SMTT+Y I P ++HY C++DLLSR
Sbjct: 328 DEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSR 387
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
+G L EA + +P KP+ W +LL C H N+++ + ++ L P + +++L
Sbjct: 388 SGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYILL 447
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDE-THPQAEKIFQM 248
SN+YA AE W V++VRKLM ++ V+K PG+SSI F AG+ HP +I +
Sbjct: 448 SNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGESCDHPMKNEICNL 507
Query: 249 WEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKN 308
+ L M+ +GY+PNTS VL DIE++EKEK L+ HSE+LA+ +GL+ PGT IRI+KN
Sbjct: 508 LKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAVAYGLLKAVPGTIIRIVKN 567
Query: 309 LRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
LR+C DCH K IS+IV REI+VRD R+H F+ G CSC D+W
Sbjct: 568 LRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCNDFW 611
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++GF ++ + NTL+D+Y KCG + A ++F EM R +W+++ L H +
Sbjct: 25 LHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASI---LTAHNK 81
Query: 62 A---KEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGR----RFFYSMTTEYGI 113
A + L+ N M G++P+ F ++ AC +G++ G+ RF S + +
Sbjct: 82 ALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEV 141
Query: 114 IPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ ++D+ ++ G EA ++ K N V W +++ G
Sbjct: 142 VK-----SSLIDMYTKCGQPDEARAVFDSILFK-NSVSWTSMISG 180
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 87/210 (41%), Gaps = 37/210 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF---------------------- 38
+VH S F + V ++LIDMY KCG + AR VF
Sbjct: 126 QVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSG 185
Query: 39 ---------IEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK-PNGVTFIGLL 88
++ R +F+W+A+I GL G + + FN+M GI + + ++
Sbjct: 186 RKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVV 245
Query: 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPN 148
C ++ ++ G++ + + G + +VD+ ++ + A + MP K +
Sbjct: 246 GGCANLALLELGKQ-IHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRK-D 303
Query: 149 GVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ W +++ G H AEEA D++
Sbjct: 304 VISWTSIIVGTAQHGK---AEEALTLYDEM 330
>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 837
Score = 340 bits (871), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 231/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +S F + + N+LID Y KCG + A +VF + ER + +W+A+I G A+HG
Sbjct: 486 QIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHG 545
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
QA +AL F++M + ++ N +TF+ LL C G V+ G F SM ++GI P +EHY
Sbjct: 546 QAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHY 605
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+V LL RAG L +A +FI ++P P+ +VW ALL C +HKN+ L ++ ++ +++P
Sbjct: 606 TCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEP 665
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +V+LSN+YA A + VA +RK MRN+GV+K PG S + + G +H F G HP
Sbjct: 666 QDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHP 725
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
I M E L +GYIP+ +VVL D+++++K + L+ HSE+LAL +GL+ TPPG
Sbjct: 726 DMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMTPPG 785
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLR C DCH AF +IS+IV REI+VRD NRFH F+ G CSCGDYW
Sbjct: 786 HPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 837
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 89/183 (48%), Gaps = 7/183 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ + G ++ V N L+D Y KC ++ + ++F + + +W+ ++ G + G
Sbjct: 385 QIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSG 444
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL+ F +M + VT+ +L AC + + S+ E
Sbjct: 445 LGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSI--EKSTFNNDTVI 502
Query: 121 G-CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
G ++D ++ G++++A + +++ ++ + + W A++ G +H A +A D+++
Sbjct: 503 GNSLIDTYAKCGYIRDALKVFQHL-MERDIISWNAIISGYALHGQ---AADALELFDRMN 558
Query: 180 PLN 182
N
Sbjct: 559 KSN 561
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V L+DMY KCG ++ AR F + V S MI A Q ++A F +++
Sbjct: 300 VGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSS 359
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRF 103
+ PN + +L AC +M +D G++
Sbjct: 360 VLPNEYSLSSVLQACTNMVQLDFGKQI 386
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 47/188 (25%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
R ++ N L++MY K G L ARR+F M ER + ++ ++Q A G + A F +
Sbjct: 93 RLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRR 152
Query: 72 ---------------MIEIGIKPNGVTFIGLLHACG------HMGWVDEGRRFFYSMTTE 110
M+++ I + G +H+C H +V G
Sbjct: 153 LRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSG---------- 202
Query: 111 YGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
++D S + +A E + N ++ + VVW A++ + D E
Sbjct: 203 ------------LIDAYSLCSLVSDA-EHVFNGIVRKDAVVWTAMVS---CYSENDCPEN 246
Query: 171 ASRQLDQL 178
A R ++
Sbjct: 247 AFRVFSKM 254
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 3/144 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + G N V + LID Y C + A VF + + W+AM+ + +
Sbjct: 184 VHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDC 243
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHY 120
+ A F+KM G KPN +L A + V G+ ++ T P +
Sbjct: 244 PENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVG-- 301
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMP 144
G ++D+ ++ G +++A +P
Sbjct: 302 GALLDMYAKCGDIKDARLAFEMIP 325
>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Glycine max]
Length = 986
Score = 340 bits (871), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 156/336 (46%), Positives = 225/336 (66%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V N LIDMY K G ++ A+ VF M +R +W++++ G +HG+ ++AL F++M ++
Sbjct: 651 VANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVP 710
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
+ P+G+TF+ +L+AC H G VD G FF M+ ++G+ P EHY CMVDL RAG L EA
Sbjct: 711 LVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEA 770
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
+ I MP++P VVW ALL CR+H N++L E A+ +L +L+ N+G + +LSNIYA A
Sbjct: 771 MKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANA 830
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGM 256
RW+DVAR+R M+ G+KK PG S I V F GD +HPQ+++I++ L+ +
Sbjct: 831 RRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQQIYETLADLIQRI 890
Query: 257 KLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCH 316
K GY+P TS L D++++EK L+ HSEKLAL +G++ P PIRI KNLR+C DCH
Sbjct: 891 KAIGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTLHPRAPIRITKNLRICGDCH 950
Query: 317 AAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+A IS+I+ EI++RD +RFH F+ GSCSC YW
Sbjct: 951 SAITYISKIIEHEIILRDSSRFHHFKNGSCSCKGYW 986
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 90/170 (52%), Gaps = 10/170 (5%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+++V N LIDMY KC E AR++F + ++R V TW+ MI G A HG A AL F+
Sbjct: 542 DLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSG 601
Query: 72 MIEI--GIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLLS 128
M ++ IKPN T L AC + + GR+ Y + YG + + C++D+ S
Sbjct: 602 MFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSV-MLFVANCLIDMYS 660
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++G + A NMP + N V W +L+ G +H E+A R D++
Sbjct: 661 KSGDVDTAQIVFDNMPQR-NAVSWTSLMTGYGMHGR---GEDALRVFDEM 706
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 43/222 (19%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME------------------ 42
+VH +S +SG ++ V N ++DMY KCG +E A +VF M+
Sbjct: 385 QVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAG 444
Query: 43 -----------------ERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFI 85
E V TW+A+I G A GQ EAL F +M + G +PN VT +
Sbjct: 445 RLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLV 504
Query: 86 GLLHACGHMGWVDEGR-------RFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
LL AC +G + G+ +F ++ ++ ++D+ ++ + A +
Sbjct: 505 SLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARK 564
Query: 139 FIRNMPIKPNGVV-WGALLGGCRVHKNIDLAEEASRQLDQLD 179
++ K VV W ++GG H + + A + + ++D
Sbjct: 565 MFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMD 606
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 91/185 (49%), Gaps = 10/185 (5%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTV---FTWSAMIQGLAIH 59
H ++SGF N+ VCN ++ MY KCG L A +F ++ R + +W++++
Sbjct: 282 HATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWA 341
Query: 60 GQAKEALTSFNKMIEIGI-KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
A AL F+KM + P+ ++ + +L AC + GR+ + + G++ +
Sbjct: 342 SDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQ-VHGFSIRSGLVDDVF 400
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC----RVHKNIDLAEEASRQ 174
+VD+ ++ G ++EA + + M K + V W A++ G R+ + L E + +
Sbjct: 401 VGNAVVDMYAKCGKMEEANKVFQRMKFK-DVVSWNAMVTGYSQAGRLEHALSLFERMTEE 459
Query: 175 LDQLD 179
+LD
Sbjct: 460 NIELD 464
>gi|346703119|emb|CBX25218.1| hypothetical_protein [Oryza brachyantha]
Length = 596
Score = 340 bits (871), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 157/351 (44%), Positives = 231/351 (65%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H Y + N V L++MY CG L+ A VF +R ++AM+QGLA HG
Sbjct: 246 AHTYLVKRQLAINRIVTTALVEMYAGCGRLDLAEHVFATASDRDTRCYNAMLQGLAAHGH 305
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ AL F++M G+ +GVT + +L +C H VDEG +F M E+GI P+IEHYG
Sbjct: 306 GRAALDLFDRMRGSGVPVDGVTILSVLCSCAHAELVDEGLEYFDKMEIEFGIEPRIEHYG 365
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VD+LSRAG L +A + I MPI PN ++ +L+ C +H N++L E +L Q DP
Sbjct: 366 CVVDMLSRAGRLDDAEKLIHEMPIVPNAAIYRSLIRACDIHGNLELGERMITELRQHDPD 425
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G HV+++N+YA RWE+ + RK M+++G+ K+PG S + ++GV+HEF+ GD+THP
Sbjct: 426 DSGNHVLIANLYARMNRWEEAKKTRKEMKSMGIDKSPGSSLLDMNGVLHEFLVGDKTHPA 485
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I+ M E++ + G+ +T+ VL D+EE++K L HSE+LA+ F L+ + PGT
Sbjct: 486 SKEIYTMVEEIEARLSEHGHRSSTTSVLFDVEEEDKADTLTYHSERLAIPFALIASDPGT 545
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVC DCH + KL+S + REIV+RDR RFH F+ G CSCGD+W
Sbjct: 546 PIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRFHHFREGECSCGDFW 596
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 13 RNIRVC--NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGL--AIHGQAKEALTS 68
R +R C L+D++ +CG + RRVF + + W+A++ A L
Sbjct: 151 RLLRSCPRAVLLDVFTRCGRIASCRRVFDRIACPDLPAWNALLSAYMRCASSAADAILEL 210
Query: 69 FNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEG 100
F++MI +G ++PN +T + ++ ACG +G + G
Sbjct: 211 FSRMISLGTVRPNEITLVAVIGACGELGALGHG 243
>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Cucumis sativus]
Length = 611
Score = 340 bits (871), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 159/344 (46%), Positives = 226/344 (65%), Gaps = 1/344 (0%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF + + N L+DMY KC + A+ +F M + V +W+++I G A HG+A+EALT +
Sbjct: 268 GFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLY 327
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
++M+ IKPN VTF+GLL+AC H G V GR F SMTT+Y I P ++HY C++DLLSR
Sbjct: 328 DEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSR 387
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
+G L EA + +P KP+ W +LL C H N+++ + ++ L P + +++L
Sbjct: 388 SGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYILL 447
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDE-THPQAEKIFQM 248
SN+YA AE W V++VRKLM ++ V+K PG+SSI F AG+ HP +I +
Sbjct: 448 SNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGESCDHPMKNEICNL 507
Query: 249 WEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKN 308
+ L M+ +GY+PNTS VL DIE++EKEK L+ HSE+LA+ +GL+ PGT IRI+KN
Sbjct: 508 LKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAVAYGLLKAVPGTIIRIVKN 567
Query: 309 LRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
LR+C DCH K IS+IV REI+VRD R+H F+ G CSC D+W
Sbjct: 568 LRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCNDFW 611
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++GF ++ + NTL+D+Y KCG + A ++F EM R +W+++ L H +
Sbjct: 25 LHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASI---LTAHNK 81
Query: 62 A---KEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGR----RFFYSMTTEYGI 113
A + L+ N M G++P+ F ++ AC +G++ G+ RF S + +
Sbjct: 82 ALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEV 141
Query: 114 IPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ ++D+ ++ G +A ++ K N V W +++ G
Sbjct: 142 VK-----SSLIDMYTKCGQPDDARAVFDSILFK-NSVSWTSMISG 180
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 87/210 (41%), Gaps = 37/210 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF---------------------- 38
+VH S F + V ++LIDMY KCG + AR VF
Sbjct: 126 QVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSG 185
Query: 39 ---------IEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK-PNGVTFIGLL 88
++ R +F+W+A+I GL G + + FN+M GI + + ++
Sbjct: 186 RKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVV 245
Query: 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPN 148
C ++ ++ G++ + + G + +VD+ ++ + A + MP K +
Sbjct: 246 GGCANLALLELGKQ-IHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRK-D 303
Query: 149 GVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ W +++ G H AEEA D++
Sbjct: 304 VISWTSIIVGTAQHGK---AEEALTLYDEM 330
>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
Length = 830
Score = 340 bits (871), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 234/352 (66%), Gaps = 2/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM-EERTVFTWSAMIQGLAIHG 60
+H Y + GF + V N L+ MY+KCGCLE R +F + R V +W+++I G +HG
Sbjct: 480 LHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLISGYGMHG 539
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+E+L F +MIE GI PN +TF+ +L AC H+G V++G++ F SM EY + P+ EHY
Sbjct: 540 FGRESLQVFEEMIEEGISPNIITFVSVLGACSHVGLVEQGKKLFESMV-EYNVTPRAEHY 598
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG L EA E I++M I+P+ VWG+LLG CR+H +++ AE A L L+P
Sbjct: 599 ACMVDLLGRAGRLDEAVELIQSMRIQPSPQVWGSLLGACRIHGHVEYAEMACSHLFDLEP 658
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +V+L++IYA A+ V +++L+ ++K PG S I V ++ FV+ D +P
Sbjct: 659 RNAGNYVLLADIYARAKLQNQVDVLKELLEEHALEKVPGCSWIEVKKKLYSFVSVDNKNP 718
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q E++ + + + MK +GY+P+T VL DIEE+EKE+ L HSEKLA+ FGL+ T G
Sbjct: 719 QVEELQALIGEFVTQMKNEGYVPDTRSVLYDIEEEEKERILLGHSEKLAVAFGLIKTGSG 778
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI KNLR+CEDCH+ K IS+ +REIVVRD NRFH F+ G CSC DYW
Sbjct: 779 EAIRITKNLRLCEDCHSVTKFISKFTDREIVVRDVNRFHHFRNGVCSCRDYW 830
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ + G+ + V TLID Y K G + A RVF M +R + +WSAMI A + +
Sbjct: 377 MHAHAIRRGYGLHTHVATTLIDCYAKLGIVSYAERVFTSMPDRNLVSWSAMIGCYAKNER 436
Query: 62 AKEALTSFNKMI--EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+A+ F +M+ + + PN +T + +LHAC + + +G + ++ G +
Sbjct: 437 PGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALGQG-KVLHAYILRRGFDLLVSV 495
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++ + + G L+ + + N V W +L+ G +H
Sbjct: 496 LNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLISGYGMH 538
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
FR + + LI+ Y L AR+VF E + +F W+AM++ LA+ +EALT
Sbjct: 280 FRSDPFLSTRLIEAYAALSALPAARQVFDEAPVKNIFVWNAMLKALALADHGEEALTCLA 339
Query: 71 KMIEIGIKPNGVTFIGLLHAC-----GHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMV 124
M +G+ + ++ L AC H+ R +++ YG+ + ++
Sbjct: 340 DMGRLGVPVDSYSYAHGLKACIAASASHLPASARVREMHAHAIRRGYGLHTHVA--TTLI 397
Query: 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
D ++ G + A +MP + N V W A++G
Sbjct: 398 DCYAKLGIVSYAERVFTSMPDR-NLVSWSAMIG 429
>gi|302781368|ref|XP_002972458.1| hypothetical protein SELMODRAFT_97859 [Selaginella moellendorffii]
gi|300159925|gb|EFJ26544.1| hypothetical protein SELMODRAFT_97859 [Selaginella moellendorffii]
Length = 381
Score = 340 bits (871), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 160/351 (45%), Positives = 228/351 (64%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ +G R + V L++MY KCG L AR VF +ME V W+A++ G A HG
Sbjct: 32 IHQNLVANGLDRELIVATALVNMYAKCGKLVEAREVFDQMEGMDVVAWTAIVAGSAQHGH 91
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+E+ +M GIKPN VTF+ L++AC H G++DE R F +M ++G P EH+
Sbjct: 92 IEESKDLMRRMELEGIKPNNVTFLSLVYACSHSGYLDEARDCFIAMA-DHGFFPLPEHFR 150
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C++DLL R G L+EA E I MP +P W +L CR+ K++ AE A+ + +++P
Sbjct: 151 CVIDLLGRGGRLEEAQEVIDAMPFEPGLTAWLTMLSACRLQKDVLRAEIAAEKCYEIEPT 210
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++++SN+YA ERW+DV +VR+LM GVKK PG S I V +HEF A D++HPQ
Sbjct: 211 RPSAYLLMSNLYAALERWDDVEKVRRLMERRGVKKEPGLSCIEVKNRLHEFGAADKSHPQ 270
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ I++ KL +K GY+P+TS+VL +++E+ K+ L+ HSE+LA+ +GL+NTPPGT
Sbjct: 271 KDLIYEELRKLTLEIKEAGYVPDTSLVLHNVDEETKQATLFHHSERLAVVYGLINTPPGT 330
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ ++ NLR+C DCH AFK IS I NR+IVVRD NRFH F G CSC DYW
Sbjct: 331 SLCVVNNLRMCSDCHTAFKYISTISNRQIVVRDANRFHTFATGGCSCKDYW 381
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M + G+K TFI +L AC + GR ++ G+ ++ +V++ ++ G
Sbjct: 1 MQQEGVKTGSATFISVLEACASTSALALGRVIHQNLVAN-GLDRELIVATALVNMYAKCG 59
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSN 191
L EA E M + V W A++ G H +I+ +++ R++ +L+ + LS
Sbjct: 60 KLVEAREVFDQME-GMDVVAWTAIVAGSAQHGHIEESKDLMRRM-ELEGIKPNNVTFLSL 117
Query: 192 IYA 194
+YA
Sbjct: 118 VYA 120
>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 610
Score = 340 bits (871), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 162/352 (46%), Positives = 234/352 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + GF N+ V N LIDMY KC + AR VF + R V +W+ M+ G A HG
Sbjct: 259 QLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHG 318
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+EAL +++M+ G KPN VTF+GL++AC H G V +GR+ F SM EYGI P+++HY
Sbjct: 319 RAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHY 378
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C +DLLSR+G L EA E + MP +P+ WGALL C +K+ ++ S +L +L P
Sbjct: 379 TCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRP 438
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +++LSN+YA +W+ VA+VRK M L ++K PG+S I F AG+
Sbjct: 439 KDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLD 498
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
E+I E+++ M+ +GY+P+TS V+ D+EE EKE L+ HSE+LA+ FGL+ +PPG
Sbjct: 499 VREEIMVFLEEMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPG 558
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ IR++KNLRVC DCH KLISEI +R+IVVRD +RFH F+ G CSC ++W
Sbjct: 559 SVIRVVKNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 610
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + S + + V ++L+DMY KCG + R+VF M + W+A++ G A +G
Sbjct: 126 QLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNG 185
Query: 61 QAKEALTSFNKM 72
+++EAL F M
Sbjct: 186 RSEEALQLFRSM 197
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 6/167 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+N V L+ Y G E A ++F M R +F W+A+I GL G++ A+ F +M
Sbjct: 169 KNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEM 228
Query: 73 IEIGIKPNGVTFIGL-LHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
G++ + + + + + GR+ S T G + + ++D+ S+
Sbjct: 229 RRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGS-TMRLGFLSNMIVGNALIDMYSKCS 287
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ A E + + + + W ++ G H AEEA D++
Sbjct: 288 DILSAREVFEGITFR-DVISWTTMVVGEAQHGR---AEEALALYDRM 330
>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Vitis vinifera]
Length = 889
Score = 339 bits (870), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 157/343 (45%), Positives = 229/343 (66%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G ++ V N LI+MY KCG L + +VF M+ + V TW+A+I ++G+ K+A+ +F
Sbjct: 547 GLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAF 606
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+M GI P+ V F+ ++ AC H G V+EG +F+ M +Y I P+IEHY C+VDLLSR
Sbjct: 607 GEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSR 666
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
+ L +A +FI +MP+KP+ +WGALL CR+ + ++AE S ++ +L+P + GY+V++
Sbjct: 667 SALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLV 726
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
SNIYA +W+ V +RK ++ G+KK PG S + + V+ F G + Q E++ ++
Sbjct: 727 SNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLL 786
Query: 250 EKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNL 309
L M +GYI N VL DI+E EK L HSE+LA+ FGL+NT PGTP+++MKNL
Sbjct: 787 GMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNL 846
Query: 310 RVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
RVCEDCH K IS+IV RE++VRD NRFH F+ G+CSCGDYW
Sbjct: 847 RVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 889
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 3/158 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+Y SG+ + N LI+MY KCG L ++ VF M+ + +W++MI +G
Sbjct: 338 VHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGS 397
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ F KM++ +KP+ VT++ LL +G + G+ + + G I
Sbjct: 398 FDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDL-AKMGFNSNIVVSN 455
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
+VD+ ++ G + ++ + NM + + + W ++ C
Sbjct: 456 TLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIASC 492
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 89/183 (48%), Gaps = 9/183 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ GF ++ + N LIDMY + L+ AR+VF EM R V +W+++I G +G
Sbjct: 137 IHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGY 196
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL + + +G+ P+ T +L ACG +G V+EG + + + GI +
Sbjct: 197 WNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG-DIIHGLIEKIGIKKDVIVNN 255
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR----QLDQ 177
++ + + L + M ++ + V W ++ G + + L EE+ + ++Q
Sbjct: 256 GLLSMYCKFNGLIDGRRIFDKMVLR-DAVSWNTMICG---YSQVGLYEESIKLFMEMVNQ 311
Query: 178 LDP 180
P
Sbjct: 312 FKP 314
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 2/153 (1%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF NI V NTL+DMY KCG + + +VF M+ R + TW+ +I L
Sbjct: 446 GFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMI 505
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
++M G+ P+ T + +L C + +G+ + + G+ + ++++ S+
Sbjct: 506 SRMRTEGVTPDMATMLSILPVCSLLAAKRQGKE-IHGCIFKLGLESDVPVGNVLIEMYSK 564
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
G L+ +++ + M K + V W AL+ C ++
Sbjct: 565 CGSLRNSFQVFKLMKTK-DVVTWTALISACGMY 596
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 77/155 (49%), Gaps = 3/155 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G ++++ V N L+ MY K L RR+F +M R +W+ MI G + G
Sbjct: 238 IHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGL 297
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+E++ F +M+ KP+ +T +L ACGH+G ++ G+ M T G
Sbjct: 298 YEESIKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITS-GYECDTTASN 355
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
++++ ++ G L + E M K + V W +++
Sbjct: 356 ILINMYAKCGNLLASQEVFSGMKCK-DSVSWNSMI 389
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 46 VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVD-EGRRFF 104
V+ W+++I+ L +G EAL+ +++ I ++P+ TF +++AC G +D E +
Sbjct: 80 VYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACA--GLLDFEMAKSI 137
Query: 105 YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ + G + ++D+ R L +A + MP++ + V W +L+ G
Sbjct: 138 HDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLR-DVVSWNSLISG 190
>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 157/343 (45%), Positives = 229/343 (66%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G ++ V N LI+MY KCG L + +VF M+ + V TW+A+I ++G+ K+A+ +F
Sbjct: 384 GLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAF 443
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+M GI P+ V F+ ++ AC H G V+EG +F+ M +Y I P+IEHY C+VDLLSR
Sbjct: 444 GEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSR 503
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
+ L +A +FI +MP+KP+ +WGALL CR+ + ++AE S ++ +L+P + GY+V++
Sbjct: 504 SALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLV 563
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
SNIYA +W+ V +RK ++ G+KK PG S + + V+ F G + Q E++ ++
Sbjct: 564 SNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLL 623
Query: 250 EKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNL 309
L M +GYI N VL DI+E EK L HSE+LA+ FGL+NT PGTP+++MKNL
Sbjct: 624 GMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNL 683
Query: 310 RVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
RVCEDCH K IS+IV RE++VRD NRFH F+ G+CSCGDYW
Sbjct: 684 RVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 726
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 8/161 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ GF ++ + N LIDMY + L+ AR+VF EM R V +W+++I G +G
Sbjct: 137 IHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGY 196
Query: 62 AKEALTSFNKMIEI------GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP 115
EAL + + I++ KP+ +T +L ACGH+G ++ G+ M T G
Sbjct: 197 WNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITS-GYEC 255
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
++++ ++ G L + E M K + V W +++
Sbjct: 256 DTTASNILINMYAKCGNLLASQEVFSGMKCK-DSVSWNSMI 295
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 86/196 (43%), Gaps = 41/196 (20%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+Y SG+ + N LI+MY KCG L ++ VF M+ + +W++MI +G+
Sbjct: 244 VHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGK 303
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI---- 117
++L F M I +T+ ++ +C H + G R M TE G+ P +
Sbjct: 304 MGDSLKVFENMKARDI----ITWNTIIASCVHSEDCNLGLRMISRMRTE-GVTPDMATML 358
Query: 118 ----------------EHYGC---------------MVDLLSRAGFLQEAYEFIRNMPIK 146
E +GC ++++ S+ G L+ +++ + M K
Sbjct: 359 SILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK 418
Query: 147 PNGVVWGALLGGCRVH 162
+ V W AL+ C ++
Sbjct: 419 -DVVTWTALISACGMY 433
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 46 VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVD-EGRRFF 104
V+ W+++I+ L +G EAL+ +++ I ++P+ TF +++AC G +D E +
Sbjct: 80 VYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACA--GLLDFEMAKSI 137
Query: 105 YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ + G + ++D+ R L +A + MP++ + V W +L+ G
Sbjct: 138 HDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLR-DVVSWNSLISG 190
>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 990
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 155/336 (46%), Positives = 226/336 (67%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V +L+DMY KCG ++ A +F +E + W+AM+ GLA HG+ KE L F +M +G
Sbjct: 655 VGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLG 714
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
IKP+ VTFIG+L AC H G V E + SM +YGI P+IEHY C+ D L RAG +++A
Sbjct: 715 IKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQA 774
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
I +M ++ + ++ LL CRV + + + + +L +L+PL++ +V+LSN+YA A
Sbjct: 775 ENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAA 834
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGM 256
+W+++ R +M+ VKK PG+S I V +H FV D ++ Q E I++ + ++ +
Sbjct: 835 SKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDI 894
Query: 257 KLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCH 316
K +GY+P T L+D+EE+EKE+ LY HSEKLA+ FGL++TPP TPIR++KNLRVC DCH
Sbjct: 895 KQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCH 954
Query: 317 AAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
A K I+++ NREIV+RD NRFH F+ G CSCGDYW
Sbjct: 955 NAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y+ +SG+ ++ V + ++DMYVKCG + A+ F + W+ MI G +G
Sbjct: 538 QVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENG 597
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ + A F++M +G+ P+ T L A + +++GR+ ++ +
Sbjct: 598 EEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQ-IHANALKLNCTNDPFVG 656
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ ++ G + +AY + + + N W A+L G H
Sbjct: 657 TSLVDMYAKCGSIDDAYCLFKRIEMM-NITAWNAMLVGLAQH 697
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + G + V N+LI+MY K AR VF M ER + +W+++I G+A +G
Sbjct: 336 QVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNG 395
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM 94
EA+ F +++ G+KP+ T +L A +
Sbjct: 396 LEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSL 429
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 14/160 (8%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA-----KEALTSFNKMI 73
N LI MY KCG L ARRVF +M +R + +W++++ A + ++A F +
Sbjct: 78 NNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILR 137
Query: 74 EIGIKPNGVTFIGLLHACGHMG--WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
+ + + +T +L C H G W E F+ + G+ G +V++ + G
Sbjct: 138 QDVVYTSRMTLSPMLKLCLHSGYVWASES---FHGYACKIGLDGDEFVAGALVNIYLKFG 194
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
++E MP + + V+W +L + + + EEA
Sbjct: 195 KVKEGKVLFEEMPYR-DVVLWNLML---KAYLEMGFKEEA 230
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H Y+ + G + V L+++Y+K G ++ + +F EM R V W+ M++ G
Sbjct: 168 HGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFK 227
Query: 63 KEALTSFNKMIEIGIKPNGVTF 84
+EA+ + G+ PN +T
Sbjct: 228 EEAIDLSSAFHSSGLNPNEITL 249
>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
Length = 606
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 155/339 (45%), Positives = 236/339 (69%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N+ V +L+DMYVKCG L+ +F M + ++S +I GL +HG ++AL F++M+
Sbjct: 268 NVAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQLSYSVIISGLGLHGYGRQALQIFSEMV 327
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
E G++P+ VT++ +L AC H G VDEG F M EY I P ++HYGCMVDL RAG L
Sbjct: 328 EEGLEPDDVTYVSVLSACSHSGLVDEGLDLFDKMKFEYRIEPTMQHYGCMVDLKGRAGLL 387
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIY 193
+EA++ +++MPIK N V+W +LL C+VH N+ L E A+ L +L N ++VLSN+Y
Sbjct: 388 EEAFQLVQSMPIKANDVLWRSLLSACKVHDNLKLGEIAAENLFRLSSHNPSDYLVLSNMY 447
Query: 194 AEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLL 253
A A++WE+ A++R M N G+ +TPG+S + V V++FV+ D+++ ++ I++M ++
Sbjct: 448 ARAQQWENAAKIRTKMINRGLIQTPGYSLVEVKSKVYKFVSQDKSYCKSGNIYKMIHQME 507
Query: 254 DGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCE 313
++ +GY+P+TS V+LD++E+EK + L HS+KLA+ F L++T G+ IRI++NLR+C
Sbjct: 508 WQLRFEGYMPDTSQVMLDVDEEEKGERLKGHSQKLAIAFALIHTSQGSAIRIIRNLRMCN 567
Query: 314 DCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
DCH+ KL+S I REI VRDRNRFH F+ G+CSC DYW
Sbjct: 568 DCHSYTKLVSMIYEREITVRDRNRFHHFKDGNCSCRDYW 606
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 9/166 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G ++ V N+LI+MY KC +E + +F ME+++V +WSA+I A
Sbjct: 153 QIHGHVFKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVASWSAIIAAHASLA 212
Query: 61 QAKEALTSFNKMIEIGI-KPNGVTFIGLLHACGHMGWVDEGRRFFYSM---TTEYGIIPQ 116
E L F M G + + +L AC H+G GR S+ TE +
Sbjct: 213 MWWECLALFEDMSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSLLKNITELNVAVM 272
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ + G LQ+ +NM + N + + ++ G +H
Sbjct: 273 TS----LMDMYVKCGSLQKGLCLFQNMT-RKNQLSYSVIISGLGLH 313
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 40/70 (57%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90
++ A +F +++E T F ++ MI+G + + A+ +N M++ ++P+ T+ +L A
Sbjct: 82 MDYACSIFQQLDEPTTFDFNTMIRGYVNNMNFENAIYLYNDMLQREVEPDNFTYPVVLKA 141
Query: 91 CGHMGWVDEG 100
C + + EG
Sbjct: 142 CARLAVIQEG 151
>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial [Vitis vinifera]
Length = 875
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 157/351 (44%), Positives = 225/351 (64%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH G R++ + L DMY KCG L+ A VF M ER++ +WS MI G +HGQ
Sbjct: 526 VHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQ 585
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++ FN+M+ GIKPN +TF+ +L AC H G V+EG+ +F SM+ E+G+ P+ +H+
Sbjct: 586 INATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMS-EFGVEPKHDHFA 644
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLLSRAG L AY+ I ++P N +WGALL GCR+HK ID+ + + L +D
Sbjct: 645 CMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTA 704
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ GY+ +LSNIYAE W+ +VR +M++ G++K PG+S+I +D ++ F GD +H Q
Sbjct: 705 DTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQ 764
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ I++ E + + Y ++ + KE + HSEKLA+ FG++NT PGT
Sbjct: 765 TKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVSHSEKLAIAFGIINTRPGT 824
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+RI KNLRVC DCH+ K+ S+I REI++RD NRFHCF+ GSCSC DYW
Sbjct: 825 TLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 875
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 96/166 (57%), Gaps = 3/166 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y ++G N V N LIDMY KCG + A ++F +++E+++ TW++MI G + +G
Sbjct: 425 QIHGYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNG 483
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EA+T F++M +K + +TF+ ++ AC H+G++++G+ + + YG+
Sbjct: 484 YSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIM-YGLRKDSYLD 542
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNID 166
+ D+ S+ G LQ A+ M + + V W ++ G +H I+
Sbjct: 543 TALTDMYSKCGELQMAHGVFDRMS-ERSIVSWSVMIAGYGMHGQIN 587
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 3/156 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y + N + N+LI MY K G L A R+F + R W+ MI G
Sbjct: 223 VHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGC 282
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL F KM E ++PN VT +G+L AC +G V EGR + + P+++ G
Sbjct: 283 FQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRS-VHGFVIRRAMDPELDFLG 341
Query: 122 -CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
+++L + G L++ ++ + K + W L+
Sbjct: 342 PALMELYADTGNLRDCHKVFETIKEK-TILSWNTLI 376
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 107/260 (41%), Gaps = 42/260 (16%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + GF + V +L+ MY + CL+ A + F M R V WS+++ +G
Sbjct: 121 KVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNG 180
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF---------------Y 105
QA E L F++MI ++P+ VT + + AC +G + GR
Sbjct: 181 QASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNN 240
Query: 106 SMTTEYGIIPQI-------EHYGC--------MVDLLSRAGFLQEAYEFIRNM---PIKP 147
S+ YG + + E+ C M+ +++G QEA M ++P
Sbjct: 241 SLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEP 300
Query: 148 NGVVWGALLGGC----RVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVA 203
N V +L C RV + + R+ +DP + L +YA+ D
Sbjct: 301 NQVTMVGVLCACARLGRVKEGRSVHGFVIRR--AMDPELDFLGPALMELYADTGNLRDCH 358
Query: 204 RVRKLMRNLGVKKTPGWSSI 223
+V + ++ K W+++
Sbjct: 359 KVFETIKE---KTILSWNTL 375
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 70/144 (48%), Gaps = 13/144 (9%)
Query: 20 TLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP 79
L+++Y G L +VF ++E+T+ +W+ +I +GQ +EAL F +M G+ P
Sbjct: 343 ALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMP 402
Query: 80 NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY-----GCMVDLLSRAGFLQ 134
+ + L ACG + + G + +G I + ++ ++D+ ++ GF+
Sbjct: 403 DSYSLASSLSACGTISFSQLGAQI-------HGYIIKTGNFNDFVQNALIDMYAKCGFVH 455
Query: 135 EAYEFIRNMPIKPNGVVWGALLGG 158
A + + K + V W +++ G
Sbjct: 456 SANKMFEKIKEK-SLVTWNSMICG 478
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 69/157 (43%), Gaps = 3/157 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + +G R+ LI+ Y + G E ++RVF + F W +I+ G
Sbjct: 19 QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGG 78
Query: 61 QAKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+EA++ +++M+ + + + F +L AC G + G + + + G
Sbjct: 79 FFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGK-VHGRVIKCGFESDAVV 137
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
++ + L +A + MPI+ + V W +++
Sbjct: 138 ETSLLCMYGEMSCLDDACKAFDTMPIR-DVVAWSSIV 173
>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Glycine max]
Length = 686
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 172/353 (48%), Positives = 225/353 (63%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + ++ NI V + L+D+Y KCG +E A +VF EM ER + TW+AMI G A G
Sbjct: 334 VHALALKACVEENIFVGSALVDLYGKCGSIEYAEQVFREMPERNLVTWNAMIGGYAHLGD 393
Query: 62 AKEALTSFNKMIE--IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
AL+ F +M GI + VT + +L AC G V+ G + F SM YGI P EH
Sbjct: 394 VDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRAGAVERGLQIFESMRGRYGIEPGAEH 453
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y C+VDLL R+G + AYEFI+ MPI P VWGALLG C++H L + A+ +L +LD
Sbjct: 454 YACVVDLLGRSGLVDRAYEFIKRMPILPTISVWGALLGACKMHGKTKLGKIAAEKLFELD 513
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P ++G HVV SN+ A A RWE+ VRK MR++G+KK G+S + V VH F A D H
Sbjct: 514 PDDSGNHVVFSNMLASAGRWEEATIVRKEMRDIGIKKNVGYSWVAVKNRVHVFQAKDSFH 573
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
+ +I M KL MK GY+P+ ++ L D+EE+EK ++ HSEK+AL FGL+ P
Sbjct: 574 EKNSEIQAMLAKLRGEMKKAGYVPDANLSLFDLEEEEKASEVWYHSEKIALAFGLITLPR 633
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIRI KNLR+C DCH+A K IS+IV REI+VRD NRFH F+ G CSC DYW
Sbjct: 634 GVPIRITKNLRICIDCHSAIKFISKIVGREIIVRDNNRFHRFKDGWCSCKDYW 686
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 2/159 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G ++ V + DMY K G AR +F EM R + TW+A + G
Sbjct: 130 QLHALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDG 189
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +A+ +F K + + +PN +TF L+AC + ++ GR+ + + +
Sbjct: 190 RCLDAIAAFKKFLCVDGEPNAITFCAFLNACADIVSLELGRQ-LHGFIVRSRYREDVSVF 248
Query: 121 GCMVDLLSRAG-FLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D + G + F R + N V W +LL
Sbjct: 249 NGLIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAA 287
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 4/141 (2%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
+CN L++MY K A+ V RTV TW+++I G + + AL F+ M
Sbjct: 45 LCNHLVNMYSKLDLPNSAQLVLSLTNPRTVVTWTSLISGCVHNRRFTSALLHFSNMRREC 104
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMV-DLLSRAGFLQE 135
+ PN TF + A + G++ +++ + G I + GC D+ S+ G E
Sbjct: 105 VLPNDFTFPCVFKASASLHMPVTGKQ-LHALALKGGNILDV-FVGCSAFDMYSKTGLRPE 162
Query: 136 AYEFIRNMPIKPNGVVWGALL 156
A MP + N W A +
Sbjct: 163 ARNMFDEMPHR-NLATWNAYM 182
>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 166/353 (47%), Positives = 232/353 (65%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIE-MEERTVFTWSAMIQGLAIHG 60
+H + +SG + V N L+D Y KCG + A+ VF M ER + +W++M+ LA+HG
Sbjct: 291 LHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHG 350
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ F+KM E GI+P+ + FI LL+AC H G V++G +F M Y I P IEHY
Sbjct: 351 HGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHY 410
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDL RAG LQ+AYEF+ MPI ++W LLG C +H ++ LAE+ +L +LDP
Sbjct: 411 GCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQVKERLSELDP 470
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+ HV+LSN YA A +W+D A VR+ M + KTPGWS I VD +++ F+AG + +
Sbjct: 471 NNSSDHVLLSNAYAVAGKWKDAASVRRSMTEQRITKTPGWSMIEVDKIMYTFLAGTKQYK 530
Query: 241 QAEKIFQMWEKLLDGMKLK-GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
E+ ++ ++++ ++++ GY+P VL DIEE+EKE + HSEKLA+ FG+
Sbjct: 531 ITEEAYKKLKEIIRRLRVEGGYVPEIGRVLHDIEEEEKEGSVSVHSEKLAVAFGIARLCK 590
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G IRI+KNLR+C DCHA KLIS+I EIVVRDR+RFH F+ G CSC DYW
Sbjct: 591 GRTIRIVKNLRICRDCHAVMKLISQIYKVEIVVRDRSRFHSFKDGYCSCRDYW 643
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 1/150 (0%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ N ++ Y K G LE AR +F+EM + +WS MI G A +G +EA + F ++
Sbjct: 201 RNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFREL 260
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
G++PN + G+L AC G ++ G + + + G+ + ++D S+ G
Sbjct: 261 QRKGMRPNETSLTGVLSACAQAGALEFG-KILHGFIEKSGLAWIVSVNNALLDTYSKCGN 319
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ A + + N V W +++ +H
Sbjct: 320 VLMAQLVFERIMNERNIVSWTSMMAALAMH 349
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 12/153 (7%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G ++ V TLI MY +CG + AR+VF EM E W+AM+ G K F
Sbjct: 136 GLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELF 195
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+ M + V G A G ++ R F M + + + M+ +
Sbjct: 196 DLMPVRNLMSWNVMLAGYTKA----GELELAREMFLEMPMKDDV-----SWSTMIVGFAH 246
Query: 130 AGFLQEAYEFIRNMP---IKPNGVVWGALLGGC 159
G+ +EA+ F R + ++PN +L C
Sbjct: 247 NGYFEEAFSFFRELQRKGMRPNETSLTGVLSAC 279
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 91/203 (44%), Gaps = 14/203 (6%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK-PNGVTFIGLLH 89
L+ A R+F VF + +I+GL + +++L F +M P+ +F ++
Sbjct: 55 LDYACRLFRYTPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVK 114
Query: 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNG 149
A ++ V G + + +G+ + ++ + GF+ A + MP +PN
Sbjct: 115 AAANLRSVRVGIQ-LHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMP-EPNA 172
Query: 150 VVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN--GYHVVLSNIYAEAERWEDVARVRK 207
+ W A++ C ++ + R+L L P+ N ++V+L+ Y +A E R+
Sbjct: 173 IAWNAMVTACCRGGDM----KGGRELFDLMPVRNLMSWNVMLAG-YTKAGELE---LARE 224
Query: 208 LMRNLGVKKTPGWSSITVDGVVH 230
+ + +K WS++ V G H
Sbjct: 225 MFLEMPMKDDVSWSTMIV-GFAH 246
>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g34160-like [Cucumis sativus]
Length = 576
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 237/352 (67%), Gaps = 3/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIHG 60
VH+Y + N++VCN +IDMY KCG ++ A VF M ++++ TW+ MI A+HG
Sbjct: 227 VHKYIVEEKLDSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHG 286
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+AL F K+ G+ P+ V+++ +L AC H G V++G + F SMT + G+ P I+HY
Sbjct: 287 DGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMT-QRGLEPNIKHY 345
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
G MVDLL RAG L+EAY+ + ++P PN V+W LLG CR + ++++AE ASR+L ++
Sbjct: 346 GSMVDLLGRAGRLKEAYDIVSSLPF-PNMVLWQTLLGACRTYGDVEMAELASRKLVEMGF 404
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ G V+LSN+YA +RW+DV RVR MR VKKTPG+S I + G +++FV GD++H
Sbjct: 405 ISCGXFVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHS 464
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+I+ +++ +K GY +TS VL DI +++KE L HSEKLA+ FGL T G
Sbjct: 465 SCREIYAKLDEINLRIKAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEG 524
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPI+++KNLR+C DCH KLIS+I REI+VRDR RFH F+ G CSC DYW
Sbjct: 525 TPIQVIKNLRICGDCHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 97/194 (50%), Gaps = 8/194 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + GF ++ + TL+D Y K G L+ A+++F EM + + +W+A+I G A
Sbjct: 124 QLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGS 183
Query: 61 QAKEALTSFNKM-IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+ +A+ +F +M ++ ++PN VT G L AC +G + EG + E + ++
Sbjct: 184 RPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGES-VHKYIVEEKLDSNVQV 242
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRV----HKNIDLAEEASRQL 175
++D+ ++ G + +AY NM + + W ++ + HK +DL E+ R
Sbjct: 243 CNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRS- 301
Query: 176 DQLDPLNNGYHVVL 189
+ P Y VL
Sbjct: 302 -GMSPDAVSYLAVL 314
>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 162/352 (46%), Positives = 231/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++ + ++ V N+LIDMY KCG + AR F +M +R +W+AMI G ++HG
Sbjct: 460 QIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHG 519
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EAL F+ M KPN +TF+G+L AC + G + +G+ F SM+ +Y I P IEHY
Sbjct: 520 MSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHY 579
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMV LL R G EA + I + +P+ +VW ALLG C +HK +DL ++ + +++P
Sbjct: 580 TCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEP 639
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ HV+LSN+YA A RW++VA VRK M+ V+K PG S + GVVH F GD +HP
Sbjct: 640 HDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVVHYFSVGDTSHP 699
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ I M E L + GY+P+ + VLLD+++ EKE+ L+ HSE+LAL +GL+ TP
Sbjct: 700 DIKLICAMLEWLNKKTRDAGYVPDCNAVLLDVQDDEKERHLWVHSERLALAYGLIRTPLS 759
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLR+C DCH KLIS++V REIV+RD NRFH F+ G CSCGDYW
Sbjct: 760 CSIRIIKNLRICIDCHTVMKLISKVVQREIVIRDINRFHHFRHGVCSCGDYW 811
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 81/162 (50%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G N+ V N ++D+Y KCG +E + ++F E+ +R TW+ +I G G
Sbjct: 359 QIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLG 418
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ A+ F M+E ++P VT+ +L A + ++ G + +S+T +
Sbjct: 419 DGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQ-IHSLTIKTMYNKDTVVA 477
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++ G + +A M K + V W A++ G +H
Sbjct: 478 NSLIDMYAKCGRINDARLTFDKMN-KRDEVSWNAMICGYSMH 518
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + + ++ V L+++Y K G + A+R+F EM + + WS MI A +
Sbjct: 259 VHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDR 318
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+KEAL F +M + + PN TF +L AC +D G++ +S ++G+ +
Sbjct: 319 SKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQ-IHSCVLKFGLNSNVFVSN 377
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ ++ G ++ + + +P + N V W ++ G
Sbjct: 378 AIMDVYAKCGEIENSMKLFEELPDR-NDVTWNTIIVG 413
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 106/264 (40%), Gaps = 49/264 (18%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G + V LID Y G ++ AR VF ++ + + +W+ M+ A +
Sbjct: 158 LHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCF 217
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLL---------------HACGHMGWVD-------- 98
+E+L FN+M +G KPN T G L H C G D
Sbjct: 218 YEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIA 277
Query: 99 ------------EGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEF---IRNM 143
+ +R F M + +IP + M+ +++ +EA + +R
Sbjct: 278 LLELYAKSGEIIDAQRLFEEM-PKTDLIP----WSLMIARYAQSDRSKEALDLFLRMRQT 332
Query: 144 PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV--VLSNIYAEAERWED 201
+ PN + ++L C ++DL ++ + + LN+ V + ++YA+ E+
Sbjct: 333 SVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFG-LNSNVFVSNAIMDVYAKCGEIEN 391
Query: 202 VARVRKLMRNLGVKKTPGWSSITV 225
KL L + W++I V
Sbjct: 392 SM---KLFEELPDRNDVTWNTIIV 412
>gi|53793521|dbj|BAD54682.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 381
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 161/353 (45%), Positives = 232/353 (65%), Gaps = 3/353 (0%)
Query: 3 HEY-SNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER--TVFTWSAMIQGLAIH 59
H Y + F + L++MY++CG ++ A +F R V TW+ MI GLA++
Sbjct: 29 HAYLATTCSFPITTNLATALLNMYMRCGDVQTACSLFHSTPTRHKDVHTWTVMIAGLALN 88
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G + +AL F M + I+P+ VT +L AC H G VDEG+R M +Y + P IEH
Sbjct: 89 GFSTDALHLFTHMKDHNIQPDSVTLTAVLSACTHAGMVDEGKRILRRMPLDYHLQPTIEH 148
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YGC VDLL RAG L+EA IR +P K + +WGALL CR H+N ++ + + ++ +LD
Sbjct: 149 YGCTVDLLGRAGLLEEALALIRAVPFKADVALWGALLVACRCHRNFEMGQMVAMEILRLD 208
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P + G V LSN+YA A +W+ V VR M+ + K PG S + +DGVV+EF++GD +H
Sbjct: 209 PQHAGAWVFLSNVYAAAGKWDLVQEVRSSMKQHRIHKPPGSSVVELDGVVYEFLSGDHSH 268
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
PQ+++I+ M +++ + LKG+ P T +V DI+E++KE + +HSEKLA+ FGL+NT
Sbjct: 269 PQSDQIYAMLDEIGKTLSLKGHKPATKLVTFDIDEEDKEVCISQHSEKLAVAFGLINTRR 328
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G IRI+KNLR+CEDCH+ K++SE+ +R IVVRDRNRFH F++GSCSC DYW
Sbjct: 329 GAVIRIVKNLRICEDCHSVMKVVSEVYDRVIVVRDRNRFHHFKSGSCSCLDYW 381
>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
Length = 562
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 218/352 (61%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + SGF ++ L+DMY KCG LE + +VF ME R +W+AMI LA HG
Sbjct: 211 QIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHG 270
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q EAL F +M G+ + TFI +L AC H G + E FF+SM +Y I P HY
Sbjct: 271 QGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHY 330
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+D + RAG LQ+A E I +MP P + W LL CR+H + A + + L +L P
Sbjct: 331 CRALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKVAELLSKLAP 390
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ + +L N+YA R+ D RVRK M + G+KK PG S I V VHEFVAGD HP
Sbjct: 391 EDSMAYTLLGNVYAATGRYGDQMRVRKGMTDRGLKKVPGKSFIEVKNKVHEFVAGDRAHP 450
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++I EKL M+ GY+PNT VL + E+EKE+ + HSEKLA+ FGL+ TPPG
Sbjct: 451 SRDEILLELEKLGGRMREAGYVPNTKDVLHAVNEEEKEQLIGLHSEKLAIAFGLIATPPG 510
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TP+ I+KNLRVC DCHAA K+I++I+ R IVVRD +RFH F+ G CSC DYW
Sbjct: 511 TPLLIVKNLRVCSDCHAATKVIAKIMRRRIVVRDTHRFHHFEDGQCSCKDYW 562
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 95/172 (55%), Gaps = 7/172 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H + GF R N L+ MY KCGCL+ AR +F + ERTV +WSAMI A+HG
Sbjct: 6 RIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYALHG 65
Query: 61 QAKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+ +EAL F++M G ++PN +TF G+ +ACG + +++GR +++ G +
Sbjct: 66 RGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGRE-IHALAMASGELKSSNA 124
Query: 120 Y--GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAE 169
++++ R G L+EA + M P+ W +++ C +N +L E
Sbjct: 125 ILENALLNMYVRCGSLEEARKVFDTMD-HPDAFSWTSMITACT--ENCELLE 173
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 81/158 (51%), Gaps = 2/158 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N L++MYV+CG LE AR+VF M+ F+W++MI + + EAL F++M GI
Sbjct: 128 NALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNLEGIP 187
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P VT +L+AC G + G++ +S G + ++D+ ++ G L+ + +
Sbjct: 188 PTSVTLASVLNACACSGALKVGKQ-IHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSK 246
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLD 176
M + N V W A++ H D A E ++++
Sbjct: 247 VFTAMETR-NSVSWTAMIAALAQHGQGDEALELFKEMN 283
>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
[Solanum demissum]
Length = 819
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 161/353 (45%), Positives = 232/353 (65%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G ++ + L+DMY CG ++ A VF EM +R + W+A+I + +G
Sbjct: 467 QLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNG 526
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A+ +SF MIE G+ P+ V+F+ +L AC H G V++ +F SMT Y + P+ +HY
Sbjct: 527 DAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHY 586
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
M+D+L R+G EA I MP +P+ V+W ++L CR+HKN DLA++A+ QL ++D
Sbjct: 587 ATMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDA 646
Query: 181 LNNGY-HVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
L + +V +SNIYAEA +WE+ A+V+K MR GVKK +S + +D VH F A D TH
Sbjct: 647 LRDAAAYVNMSNIYAEAGKWENAAKVKKAMRERGVKKVTAYSWVEIDHRVHVFTANDRTH 706
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
PQ E+I + L++ M +GY P+TS L +++E+ K + L HSE+LA+ F L+NTP
Sbjct: 707 PQTEQIRRKINSLVELMDKEGYKPDTSCTLQNVDEEMKIESLKYHSERLAIAFALINTPE 766
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G+PI IMKNLR C DCHAA K+IS+IV REI VRD +RFH F+ GSCSCGDYW
Sbjct: 767 GSPIIIMKNLRACVDCHAAIKVISKIVGREITVRDSSRFHHFRDGSCSCGDYW 819
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 2/144 (1%)
Query: 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
++V N L+DMY KC E A R+F + R W+A+I G +EAL F +M
Sbjct: 380 VQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNR 439
Query: 75 IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ 134
+ + TF L A ++ V G++ +S G++ + +VD+ + G ++
Sbjct: 440 ENVHGDQATFASTLKASANLASVSLGKQ-LHSSVIRLGLLSSVFSGSVLVDMYANCGSMK 498
Query: 135 EAYEFIRNMPIKPNGVVWGALLGG 158
+A E + MP + N V W AL+
Sbjct: 499 DAIEVFKEMPDR-NIVCWNALISA 521
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 120/285 (42%), Gaps = 51/285 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + GF ++ V N+L+D Y K CL+ A ++F EM + +++ MI G +G
Sbjct: 164 QIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYG 223
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F +M + +P+G TF +L V G++ + + + + I
Sbjct: 224 FREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQ-IHGLAIKTSYVWDIFVA 282
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC----RVHKNIDLAEEASRQLD 176
++D S+ ++ A MP + +GV + ++ G + K+ DL + Q
Sbjct: 283 NALLDFYSKHDYIDLAKNLFDEMP-ELDGVSYNIIITGYAWNGQYEKSFDLFKRL--QGT 339
Query: 177 QLDPLNNGYHVVLS----------------------------------NIYAEAERWEDV 202
D N + +LS ++YA+ E++ED
Sbjct: 340 SFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDA 399
Query: 203 ARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQ 247
R+ NL + + W++I V F H +A K+F+
Sbjct: 400 NRI---FANLAYRNSVPWTAIISIYVQKGF------HEEALKMFK 435
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 120/300 (40%), Gaps = 73/300 (24%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN N ++ YVK L AR +F M R +W+ MI G + + Q KEA + +M
Sbjct: 75 RNTSSVNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEM 134
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGR-------RF--------FYSMTTEY------ 111
G+KP+ +TF LL + E RF F S+ Y
Sbjct: 135 CRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCL 194
Query: 112 GIIPQI---------EHYGCMVDLLSRAGFLQEAYEF---IRNMPIKPNGVVWGALLG-- 157
I Q+ + M+ ++ GF +EA + +RNM +P+G + A+LG
Sbjct: 195 DIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMS 254
Query: 158 --------GCRV-------------------------HKNIDLAEEASRQLDQLDPLNNG 184
G ++ H IDLA+ ++ +LD ++
Sbjct: 255 VGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVS-- 312
Query: 185 YHVVLSNIYAEAERWEDVARVRKLMR--NLGVKKTPGWSSITVDGVVHEFVAGDETHPQA 242
Y+++++ YA ++E + K ++ + K P + ++V + G +TH QA
Sbjct: 313 YNIIITG-YAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQA 371
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/182 (19%), Positives = 82/182 (45%), Gaps = 5/182 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++ + +I V N L+D Y K ++ A+ +F EM E +++ +I G A +G
Sbjct: 265 QIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNG 324
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q +++ F ++ F +L + GR+ ++ + +++
Sbjct: 325 QYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQ-THAQAVVTTAVSEVQVG 383
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+VD+ ++ ++A N+ + N V W A++ ++ EEA + +++
Sbjct: 384 NALVDMYAKCEKFEDANRIFANLAYR-NSVPWTAIIS---IYVQKGFHEEALKMFKEMNR 439
Query: 181 LN 182
N
Sbjct: 440 EN 441
>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 156/351 (44%), Positives = 234/351 (66%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ ++ +I V +++IDMY K GC+ ++R+F + E+ V +W+ +I G IHG+
Sbjct: 433 LHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGR 492
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEAL F KM+ +G+KP+ TF G+L AC H G V++G +F M + I P++EHY
Sbjct: 493 GKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYT 552
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VD+L RAG + +A I MP P+ +W +LL CR+H N+ L E+ + +L +L+P
Sbjct: 553 CVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPE 612
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+V++SN++A + +W+DV RVR M+++G++K G S I V G VH F+ GDE P+
Sbjct: 613 KPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPE 672
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E++ + W +L + GY P+T VL D+EE++K L HSEKLA++FGL+NT G
Sbjct: 673 LEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGL 732
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P+R+ KNLR+C DCH A K IS++VNR+IVVRD RFH F+ G CSCGDYW
Sbjct: 733 PVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 783
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGA-RRVFIEMEERTVFTWSAMIQGLAIHG 60
+H + + ++ V N LI MY KCG +E A +RVF M+ +TV +W+A++ G A +
Sbjct: 230 IHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNS 289
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM 94
++AL + +M + G+ P+ T LL AC M
Sbjct: 290 DPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRM 323
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 80/161 (49%), Gaps = 5/161 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNT-LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
R+HE + S N V NT +I MY CG +R VF ++ + +F W+A++ +
Sbjct: 126 RLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRN 185
Query: 60 GQAKEALTSFNKMIEIGI-KPNGVTFIGLLHACGHMGWVDEGR-RFFYSMTTEYGIIPQI 117
++A++ F+++I + KP+ T ++ AC G +D G + + M T+ ++ +
Sbjct: 186 ELFEDAMSIFSELISVTEHKPDNFTLPCVIKACA--GLLDLGLGQIIHGMATKMDLVSDV 243
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + + G ++EA + + ++ W ALL G
Sbjct: 244 FVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCG 284
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 79/164 (48%), Gaps = 8/164 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ ++G + + +L+ +Y+ CG A+ +F ME R++ +W+ MI G + +G
Sbjct: 332 IHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGL 391
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ F +M+ GI+P + + + AC + + G+ + + + I
Sbjct: 392 PDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKE-LHCFALKAHLTEDIFVSS 450
Query: 122 CMVDLLSRAGFL---QEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++ G + Q ++ +R + W ++ G +H
Sbjct: 451 SIIDMYAKGGCIGLSQRIFDRLREKDVAS----WNVIIAGYGIH 490
>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Glycine max]
Length = 782
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 227/352 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Q G ++ V N LI MY +CG +E A VF+ M +W+AMI LA HG
Sbjct: 431 QLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHG 490
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+ + KM++ I P+ +TF+ +L AC H G V EGR +F +M YGI P+ +HY
Sbjct: 491 HGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHY 550
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
++DLL RAG EA +MP +P +W ALL GC +H N++L +A+ +L +L P
Sbjct: 551 SRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMP 610
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+G ++ LSN+YA +W++VARVRKLMR GVKK PG S I V+ +VH F+ D HP
Sbjct: 611 QQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHP 670
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +++ E+L+ M+ GY+P+T VL D+E ++KE L HSEKLA+ +G+M P G
Sbjct: 671 EVHAVYRYLEQLVHEMRKLGYVPDTKFVLHDMESEQKEYALSTHSEKLAVVYGIMKLPLG 730
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR+ KNLR+C DCH AFK IS++V+REI+VRDR RFH F+ G CSC +YW
Sbjct: 731 ATIRVFKNLRICGDCHNAFKYISKVVDREIIVRDRKRFHHFRNGECSCSNYW 782
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 33/179 (18%)
Query: 15 IRVCNTLIDMYVKCGCLEGARRVFI-------------------------------EMEE 43
+ V N LI +Y +CG L ARRVF EM
Sbjct: 313 LSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPV 372
Query: 44 RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF 103
R++ TW+ MI GLA +G +E L FN+M G++P + G + +C +G +D G++
Sbjct: 373 RSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQ- 431
Query: 104 FYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+S + G + ++ + SR G ++ A MP + V W A++ H
Sbjct: 432 LHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYV-DSVSWNAMIAALAQH 489
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 10/170 (5%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
RR+ T+I YV+ L AR + M + W+AMI G G +EA +
Sbjct: 205 RRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRR 264
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHY-----GCMVD 125
M +GI+ + T+ ++ A + G + GR+ Y + T ++ H+ ++
Sbjct: 265 MHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRT---VVQPSGHFVLSVNNALIT 321
Query: 126 LLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
L +R G L EA MP+K + V W A+L GC + I+ A R++
Sbjct: 322 LYTRCGKLVEARRVFDKMPVK-DLVSWNAILSGCVNARRIEEANSIFREM 370
>gi|220061997|gb|ACL79586.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
Length = 587
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 167/353 (47%), Positives = 237/353 (67%), Gaps = 7/353 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIH 59
VHE++ + G RN+RVCN+LIDMY KCG L A VF I+ E++T+ +++A IQ ++H
Sbjct: 240 VHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQTLVSYNAAIQAHSMH 299
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G +AL F++M I+P+GVT++ +L C H G VD+G R F SM + P ++H
Sbjct: 300 GHGGDALRLFDEM-PTRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMR----VAPNMKH 354
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YG +VDLL RAG L EAY+ + +MP + V+W LLG ++H ++LAE A+ +L +L
Sbjct: 355 YGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELG 414
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
+G +V+LSN+YA RW DV RVR MR+ V+K PG+S +DGV+H+F+ GD+ H
Sbjct: 415 SNVDGDYVLLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEH 474
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ ++I++ E ++ + GY P TS VL DI E+EK+ L HSEKLA+ FGL+ TPP
Sbjct: 475 PRWQEIYRALEDIVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEKLAIAFGLIATPP 534
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G +R++KNLR+C DCH KLIS+ R IV+RDR RFH F+ G CSC DYW
Sbjct: 535 GETLRVIKNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRDYW 587
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 119/281 (42%), Gaps = 31/281 (11%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G ++R+ TL+D Y KCG L AR+VF EM R V TW++++ GLA
Sbjct: 132 QLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGT 191
Query: 61 QAKEALTSFNKM------IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGII 114
+ AL F+++ + +PN VT + L AC +G + +G + + +G+
Sbjct: 192 EPNLALALFHRLANSFQELPSREEPNEVTIVAALSACAQIGLLKDG-MYVHEFAKRFGLD 250
Query: 115 PQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQ 174
+ ++D+ S+ G L A + + IKP + + H +A R
Sbjct: 251 RNVRVCNSLIDMYSKCGSLSRALDVFHS--IKPEDQTLVSYNAAIQAHSMHGHGGDALRL 308
Query: 175 LDQL----DPLNNGYHVVL-----SNIYAEAERWEDVARVRKLMRNLG----VKKTPGWS 221
D++ +P Y VL S + + R + RV M++ G + G
Sbjct: 309 FDEMPTRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMRVAPNMKHYGTIVDLLGRAGRL 368
Query: 222 SITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYI 262
+ D V+ D +W+ LL K+ G +
Sbjct: 369 TEAYDTVISMPFPAD---------IVLWQTLLGAAKMHGVV 400
>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g34160-like [Cucumis sativus]
Length = 576
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 237/352 (67%), Gaps = 3/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIHG 60
VH+Y + N++VCN +IDMY KCG ++ A VF M ++++ TW+ MI A+HG
Sbjct: 227 VHKYIVEEKLNSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHG 286
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+AL F K+ G+ P+ V+++ +L AC H G V++G + F SMT + G+ P I+HY
Sbjct: 287 DGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMT-QRGLEPNIKHY 345
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
G MVDLL RAG L+EAY+ + ++P PN V+W LLG CR + ++++AE ASR+L ++
Sbjct: 346 GSMVDLLGRAGRLKEAYDIVSSLPF-PNMVLWQTLLGACRTYGDVEMAELASRKLVEMGF 404
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ G V+LSN+YA +RW+DV RVR MR VKKTPG+S I + G +++FV GD++H
Sbjct: 405 ISCGDFVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHS 464
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+I+ +++ +K GY +TS VL DI +++KE L HSEKLA+ FGL T G
Sbjct: 465 SCREIYAKLDEINLRIKAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEG 524
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPI+++KNLR+C DCH KLIS+I REI+VRDR RFH F+ G CSC DYW
Sbjct: 525 TPIQVIKNLRICGDCHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + GF ++ + TL+D Y K G L+ A+++F EM + + +W+A+I G A
Sbjct: 124 QLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGS 183
Query: 61 QAKEALTSFNKM-IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+ +A+ +F +M ++ ++PN VT G L AC +G + EG + E + ++
Sbjct: 184 RPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGES-VHKYIVEEKLNSNVQV 242
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRV----HKNIDLAEEASRQ 174
++D+ ++ G + +AY NM + + W ++ + HK +DL E+ R
Sbjct: 243 CNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRS 301
>gi|125554650|gb|EAZ00256.1| hypothetical protein OsI_22267 [Oryza sativa Indica Group]
Length = 602
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 161/351 (45%), Positives = 226/351 (64%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
++ + QSG + ++ ++DMY KCGC++ A RVF + R + TW+ MI G A+HG+
Sbjct: 252 IYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEAWRVFDSLPARGLTTWNCMIGGFAVHGR 311
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+AL F++M G+ P+ VT + +L AC H G V EGRR+ + + +GI P+ EHYG
Sbjct: 312 CDDALELFHQMEAAGVAPDDVTLLNVLTACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYG 371
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL RAG L EA + I MP+ P+ V GALLG C++H ++DL E ++ LDP
Sbjct: 372 CMVDLFGRAGQLDEAKKVIDEMPMDPDLAVLGALLGACKIHGDVDLGEAIGWRVIDLDPD 431
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +V+L+N+ A A RW++V +VR+LM V K G S I VDG EF G+ HPQ
Sbjct: 432 NSGRYVLLANLLAGAGRWDEVGKVRRLMDERNVSKEAGRSVIEVDGEACEFRCGNLRHPQ 491
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A +I+ M ++ ++ +GY+P+T L D+ E++KE L HSEKLA+ FGL+ P
Sbjct: 492 AREIYAMAVDMVSRIRAEGYVPDTGEALHDVAEEDKEAALLCHSEKLAIAFGLLRARPRE 551
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+RI KNLRVC DCH A K +S + REIVVRDR+RFH F+ G CSC DYW
Sbjct: 552 TLRITKNLRVCRDCHEATKYVSRVFGREIVVRDRSRFHHFKDGMCSCKDYW 602
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 2/158 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
T++ + G ++ AR VF M R + +W++MI G + +AL F++M +G++
Sbjct: 168 TTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMRALGVE 227
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
NG L AC G + GR Y + GI + +VD+ + G + EA+
Sbjct: 228 GNGFVATSALVACTGAGALGRGRE-IYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEAWR 286
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLD 176
++P + W ++GG VH D A E Q++
Sbjct: 287 VFDSLPAR-GLTTWNCMIGGFAVHGRCDDALELFHQME 323
>gi|147860852|emb|CAN83162.1| hypothetical protein VITISV_022557 [Vitis vinifera]
Length = 562
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 159/351 (45%), Positives = 236/351 (67%), Gaps = 3/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + N + + LID+Y KCG + A++VF ++ V W++MI GLAIHG
Sbjct: 215 VHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGL 274
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A +A+ F++M + P+ +TFIG+L AC H G V++GRR+F M Y I PQ+EHYG
Sbjct: 275 ALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYG 334
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
MVDLL RAG ++EAY I+ MP++P+ V+W ALL CR KN +L E A + ++ L
Sbjct: 335 AMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALLSACRNFKNPELGEVA---IAKISHL 391
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +++LSN+Y E+W+ RVR++M+ GV+K G S + + GV+H+F AGD +HP+
Sbjct: 392 NSGDYILLSNMYCSLEKWDSAERVREMMKRDGVRKNRGRSWVELGGVIHQFKAGDRSHPE 451
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
I+++ E L+ KL+G++P T +VL+D+ ++E+E+ L HSEKLAL + ++ T PGT
Sbjct: 452 TGAIYKVLEGLIRRTKLEGFMPATDLVLMDVSDEEREENLNSHSEKLALAYVILKTSPGT 511
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR+ KNLR C DCH K++S +++R I+VRDR RFH F+ G CSC DYW
Sbjct: 512 EIRVSKNLRTCHDCHCWMKILSRLLSRVIIVRDRIRFHQFEGGLCSCRDYW 562
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 2/144 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N +I +K G + A+RVF +M R V TW++MI G + + +EAL F +M+ ++
Sbjct: 131 NLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVE 190
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+G TF +++ C +G + + E I ++DL S+ G + A +
Sbjct: 191 PDGFTFASVINGCARLGSSHHA-ELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKK 249
Query: 139 FIRNMPIKPNGVVWGALLGGCRVH 162
++ + VW +++ G +H
Sbjct: 250 VFNSIQ-HDDVSVWNSMINGLAIH 272
>gi|225456505|ref|XP_002280974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50990
[Vitis vinifera]
Length = 523
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 159/351 (45%), Positives = 236/351 (67%), Gaps = 3/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + N + + LID+Y KCG + A++VF ++ V W++MI GLAIHG
Sbjct: 176 VHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGL 235
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A +A+ F++M + P+ +TFIG+L AC H G V++GRR+F M Y I PQ+EHYG
Sbjct: 236 ALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYG 295
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
MVDLL RAG ++EAY I+ MP++P+ V+W ALL CR KN +L E A + ++ L
Sbjct: 296 AMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALLSACRNFKNPELGEVA---IAKISHL 352
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +++LSN+Y E+W+ RVR++M+ GV+K G S + + GV+H+F AGD +HP+
Sbjct: 353 NSGDYILLSNMYCSLEKWDSAERVREMMKRDGVRKNRGRSWVELGGVIHQFKAGDRSHPE 412
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
I+++ E L+ KL+G++P T +VL+D+ ++E+E+ L HSEKLAL + ++ T PGT
Sbjct: 413 TGAIYKVLEGLIRRTKLEGFMPATDLVLMDVSDEEREENLNSHSEKLALAYVILKTSPGT 472
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR+ KNLR C DCH K++S +++R I+VRDR RFH F+ G CSC DYW
Sbjct: 473 EIRVSKNLRTCHDCHCWMKILSRLLSRVIIVRDRIRFHQFEGGLCSCRDYW 523
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 2/149 (1%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ N +I +K G + A+RVF +M R V TW++MI G + + +EAL F +M+
Sbjct: 87 DLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREML 146
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
++P+G TF +++ C +G + + E I ++DL S+ G +
Sbjct: 147 NSNVEPDGFTFASVINGCARLGSSHHA-ELVHGLMIEKKIQLNFILSSALIDLYSKCGRI 205
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
A + ++ + VW +++ G +H
Sbjct: 206 NTAKKVFNSIQ-HDDVSVWNSMINGLAIH 233
>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g34160-like [Vitis vinifera]
Length = 573
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 168/352 (47%), Positives = 235/352 (66%), Gaps = 2/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIHG 60
VH + N++VCN +IDMY KCG + RVF M ++V TW+ MI A+HG
Sbjct: 223 VHACVRKMDLDINVQVCNAVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMHG 282
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
AL F +M + ++ + VT++ +L AC H G V+EG R F M G+ ++HY
Sbjct: 283 DGCRALELFEEMGKTQVEMDSVTYLAVLCACNHAGLVEEGVRLFDEMVGR-GVNRNVKHY 341
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
G +VDLL RAG L EAY I +MPI P+ V+W +LLG C+ + N+++AE ASR+L ++
Sbjct: 342 GSVVDLLGRAGRLGEAYRIINSMPIVPDVVLWQSLLGACKTYGNVEMAEMASRKLVEMGS 401
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ G V+LSN+YA ERWEDV RVR+ M++ V+K PG+S I V+GV+H+FV GD++HP
Sbjct: 402 NSCGDFVLLSNVYAARERWEDVGRVREAMKSRDVRKVPGFSYIEVEGVIHKFVNGDQSHP 461
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+I+ +++ +K GY+ TS+VL DI E++KE L HSEKLA+ FGL++T G
Sbjct: 462 DWREIYAKLDEIRFRIKAFGYVAETSLVLHDIGEEDKENALCHHSEKLAVAFGLISTSEG 521
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPIR+ KNLR+C DCH KLIS+I ++EI+VRDR RFH F+ GSCSC DYW
Sbjct: 522 TPIRVNKNLRICGDCHVVIKLISKIYDQEIIVRDRARFHRFKDGSCSCRDYW 573
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 94/186 (50%), Gaps = 5/186 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G +I + TLID Y KCG L+ A+RVF E+ R V W+A+I GLA
Sbjct: 121 QIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNALIAGLAQGS 180
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++ EAL FN+M G K N ++ +G L AC +G + G ++ + + ++
Sbjct: 181 KSSEALALFNRMRAEGEKINEISVLGALAACSQLGALRAGEG-VHACVRKMDLDINVQVC 239
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASRQLD 176
++D+ ++ GF + + M + V W ++ +H + ++L EE +
Sbjct: 240 NAVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFEEMGKTQV 299
Query: 177 QLDPLN 182
++D +
Sbjct: 300 EMDSVT 305
>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
Length = 818
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 231/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +S F + + N+LID Y KCG + A +VF + ER + +W+A+I G A+HG
Sbjct: 467 QIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHG 526
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
QA +AL F++M + ++ N +TF+ LL C G V+ G F SM ++GI P +EHY
Sbjct: 527 QAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPSMEHY 586
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+V LL RAG L +A +FI ++P P+ +VW ALL C +HKN+ L ++ ++ +++P
Sbjct: 587 TCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEP 646
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +V+LSN+YA A + VA +RK MRN+GV+K PG S + + G +H F G HP
Sbjct: 647 QDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHP 706
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
I M E L +GYIP+ +VVL D+++++K + L+ HSE+LAL +GL+ TPPG
Sbjct: 707 DMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMTPPG 766
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLR C DCH AF +IS+IV REI+VRD NRFH F+ G CSCGDYW
Sbjct: 767 HPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 818
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 89/183 (48%), Gaps = 10/183 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ + G ++ V N L+D Y KC ++ + ++F + + +W+ ++ G + G
Sbjct: 366 QIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSG 425
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL+ F +M + VT+ +L AC + + S+ E
Sbjct: 426 LGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSI--EKSTFNNDTVI 483
Query: 121 G-CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
G ++D ++ G++++A + +++ ++ + + W A++ G +H +A+ L+ D
Sbjct: 484 GNSLIDTYAKCGYIRDALKVFQHL-MERDIISWNAIISGYALHG------QAADALELFD 536
Query: 180 PLN 182
+N
Sbjct: 537 RMN 539
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V L+DMY KCG ++ AR F + V S MI A Q ++A F +++
Sbjct: 281 VGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSS 340
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRF 103
+ PN + +L AC +M +D G++
Sbjct: 341 VLPNEYSLSSVLQACTNMVQLDFGKQI 367
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 44/166 (26%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
R ++ N L++MY K G L ARR+F M ER + ++ ++Q A G + A F +
Sbjct: 93 RLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRR 152
Query: 72 ---------------MIEIGIKPNGVTFIGLLHACG------HMGWVDEGRRFFYSMTTE 110
M+++ I + G +H+C H +V G
Sbjct: 153 LRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSG---------- 202
Query: 111 YGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
++D S + +A E + N ++ + VVW A++
Sbjct: 203 ------------LIDAYSLCSLVSDA-EHVFNGIVRKDAVVWTAMV 235
>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Brachypodium distachyon]
Length = 874
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 235/352 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H S + ++ I V + L+ MY + G ++ AR VF +R + +W++MI G A HG
Sbjct: 523 QFHAISIKYRYQDAICVGSALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHG 582
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+KEAL +F +M +GI+ +G TF+ ++ C H G V EG+++F SM ++ I P +EHY
Sbjct: 583 YSKEALDTFRQMETVGIEMDGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHY 642
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDL SRAG L E I MP +VW LLG CRVHKN++L + A+++L L+P
Sbjct: 643 SCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLLLEP 702
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+LSNIYA A RW++ VRKLM + VKK G S I + VH F+A D++HP
Sbjct: 703 DDSATYVLLSNIYAAAGRWKERDEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIACDKSHP 762
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+E+I+ + + +K +GY PNTSVVL DI E++KE L HSE+LAL FGL+ TPP
Sbjct: 763 LSEQIYAKLKAMTTRLKQEGYCPNTSVVLHDIAEEQKETMLVMHSERLALAFGLIATPPR 822
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TP++I+KNLRVC DCH K++S I +REI++RD +RFH F AG+CSCGD+W
Sbjct: 823 TPLQIVKNLRVCGDCHMVMKMVSLIEDREIIMRDCSRFHHFNAGACSCGDFW 874
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 97/192 (50%), Gaps = 3/192 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH S + G R + VCN+LI+MY KCG +E A+ VF +ME R + +W+ ++ GL ++
Sbjct: 222 RVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNE 281
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL F+ K + T+ ++ C ++ + R+ +S ++G
Sbjct: 282 HQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQ-LHSCVLKHGFHSDGNVM 340
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL--DQL 178
++D S+ G L +A+ MP N V W A++GGC + +I LA ++ D +
Sbjct: 341 TAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNV 400
Query: 179 DPLNNGYHVVLS 190
P Y VL+
Sbjct: 401 KPNEFTYSTVLT 412
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 1 RVHEYSNQSGF-RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
++H + GF R + V L+DMY+KCG +E R VF M +R V TW++++ G
Sbjct: 120 QLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQG 179
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+ + F +M G+ PN TF +L A G VD GRR ++ + ++G +
Sbjct: 180 RACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRR-VHAQSVKFGCRSTVFV 238
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++++ S+ G ++EA R M + + V W L+ G
Sbjct: 239 CNSLINMYSKCGLVEEAKAVFRQMETR-DMVSWNTLMAG 276
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 3/179 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ ++ V L+ Y K G E A +F ++ + V WSAM+ + G
Sbjct: 421 QIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAG 480
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH-MGWVDEGRRFFYSMTTEYGIIPQIEH 119
A F KM G+KPN T + AC +D+GR+ F++++ +Y I
Sbjct: 481 DCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQ-FHAISIKYRYQDAICV 539
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+V + +R G + A + + V W +++ G H A + RQ++ +
Sbjct: 540 GSALVTMYARKGSIDSA-RIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETV 597
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIH 59
++H + GF + V ++D Y KCG L+ A +F+ M + V +W+AMI G +
Sbjct: 323 QLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQN 382
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90
A F++M E +KPN T+ +L A
Sbjct: 383 ADIPLAAALFSRMREDNVKPNEFTYSTVLTA 413
>gi|414885893|tpg|DAA61907.1| TPA: hypothetical protein ZEAMMB73_945776 [Zea mays]
Length = 584
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 168/348 (48%), Positives = 237/348 (68%), Gaps = 6/348 (1%)
Query: 11 FRRNIRV----CNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIHGQAKEA 65
FR+ I V + LI+MY KCG +EGA VF + +R++ TW+AM+ G +G ++ A
Sbjct: 237 FRKCIEVEEKLSSALINMYSKCGFIEGAVYVFDNVGGKRSLDTWNAMLAGFTANGYSERA 296
Query: 66 LTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125
L F +M + PN +TF +L+AC H G V+EG ++F M+ YGI P I HYGCMVD
Sbjct: 297 LELFTRMESTRLMPNKITFNTVLNACSHGGLVEEGMKYFQRMSRFYGIEPDIAHYGCMVD 356
Query: 126 LLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGY 185
L RAG ++A E I+ MP++P+ + ALLG CR HKN++L ++ +L + ++
Sbjct: 357 LFCRAGMFEKAEEIIQTMPMEPDASMLKALLGACRTHKNLELGKKVGHRLIEAAANDHAG 416
Query: 186 HVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKI 245
+V+LSNIYA W V +VRKLM + GV KTPG SS+ ++GV+HEF++GD++H + I
Sbjct: 417 YVLLSNIYALDGNWGGVHKVRKLMLDRGVLKTPGSSSVELNGVIHEFISGDKSHSRKRDI 476
Query: 246 FQMWEKLLDGMKLKGYIPNTSVVLLDIEEKE-KEKFLYRHSEKLALTFGLMNTPPGTPIR 304
++M ++ +K GY P+TS VLLDI++++ KE L HSEKLA+ FGL++T PGTPIR
Sbjct: 477 YKMLGEICQQLKSSGYTPDTSQVLLDIDDEDVKESSLALHSEKLAIAFGLISTAPGTPIR 536
Query: 305 IMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
++ NLR+C DCH A KLIS+I R I+VRD NRFH F+ GSCSCGDYW
Sbjct: 537 VVNNLRICGDCHNAIKLISKIYGRCIIVRDANRFHHFRKGSCSCGDYW 584
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 67/142 (47%), Gaps = 3/142 (2%)
Query: 19 NTLIDMYVKCGCLEGA-RRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG- 76
N L+ Y + G E R F M R +W+ ++ ++G+ EA+ F +M+
Sbjct: 146 NCLLRGYAQEGGDEDLLRDFFARMPSRDSVSWNTVLSWCVVNGEYDEAIAVFREMLASQE 205
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
+P+ VT + ++ A ++G + G + ++ I + + ++++ S+ GF++ A
Sbjct: 206 CQPDRVTLVSVVSAIAYLGALAHG-LWAHAYVFRKCIEVEEKLSSALINMYSKCGFIEGA 264
Query: 137 YEFIRNMPIKPNGVVWGALLGG 158
N+ K + W A+L G
Sbjct: 265 VYVFDNVGGKRSLDTWNAMLAG 286
>gi|125599411|gb|EAZ38987.1| hypothetical protein OsJ_23405 [Oryza sativa Japonica Group]
Length = 531
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 162/344 (47%), Positives = 236/344 (68%), Gaps = 4/344 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ + N+L+D+Y KCG LE A++VF M R + +W+ MI LA HG+ E++ F++M
Sbjct: 188 RDMLINNSLVDLYGKCGALELAQQVFDRMPARDLASWNVMILTLANHGRVCESVELFDRM 247
Query: 73 IEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
++ + PN +TF+ +L AC H G V+EGRR+F M +Y I P+IEHYGCMVDLL+RAG
Sbjct: 248 TQVEKMAPNAITFVAVLSACNHGGLVEEGRRYFAMMVDQYRIKPRIEHYGCMVDLLARAG 307
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGC-RVHKNIDLAEEASR-QLDQLDPLNNGYHVVL 189
F++EA + + M +P+ ++W +LL C + + ++L E ++ L+ D +G +V+L
Sbjct: 308 FIEEALDIVAGMNCRPDAIIWRSLLDACCKKNAGLELTEAMAKLALEVPDDAVSGVYVLL 367
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
S +YA A+RW DV VR+LM GVKK PG+SSI +DG+VH+FVAGD +HPQ+E I++
Sbjct: 368 SRVYASAQRWNDVGMVRRLMVEEGVKKEPGFSSIEMDGLVHQFVAGDTSHPQSEAIYEKL 427
Query: 250 EKLLDGMKLKGYIPNTS-VVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKN 308
+++ + GY P+ S L+ + K L HSE+LA++FGL+N PG PIRI+KN
Sbjct: 428 DEIQLKLTSAGYKPDLSEAPLVASIDNAKGAALRLHSERLAISFGLLNATPGAPIRILKN 487
Query: 309 LRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
LRVC+DCH KLIS++ EI+VRDR RFH F+ GSCSC DYW
Sbjct: 488 LRVCKDCHTISKLISKLYGVEIIVRDRIRFHHFKDGSCSCKDYW 531
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 13/131 (9%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI-EI 75
V N+L+ +Y CG A +F + +R++ +W+ + L +G AL F +M +
Sbjct: 101 VANSLLHLYSSCGLPGAALDLFRRIPDRSLVSWNTAVDALVGNGDHLAALDLFREMQRDT 160
Query: 76 GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE 135
+ P+ T +L A +G +G M +VDL + G L+
Sbjct: 161 ELAPDAYTVQSVLGA--ELGGDGDGEAVSRDMLIN----------NSLVDLYGKCGALEL 208
Query: 136 AYEFIRNMPIK 146
A + MP +
Sbjct: 209 AQQVFDRMPAR 219
>gi|115470991|ref|NP_001059094.1| Os07g0191500 [Oryza sativa Japonica Group]
gi|34394559|dbj|BAC83863.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50510108|dbj|BAD30876.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610630|dbj|BAF21008.1| Os07g0191500 [Oryza sativa Japonica Group]
Length = 550
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 162/344 (47%), Positives = 236/344 (68%), Gaps = 4/344 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ + N+L+D+Y KCG LE A++VF M R + +W+ MI LA HG+ E++ F++M
Sbjct: 207 RDMLINNSLVDLYGKCGALELAQQVFDRMPARDLASWNVMILTLANHGRVCESVELFDRM 266
Query: 73 IEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
++ + PN +TF+ +L AC H G V+EGRR+F M +Y I P+IEHYGCMVDLL+RAG
Sbjct: 267 TQVEKMAPNAITFVAVLSACNHGGLVEEGRRYFAMMVDQYRIKPRIEHYGCMVDLLARAG 326
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGC-RVHKNIDLAEEASR-QLDQLDPLNNGYHVVL 189
F++EA + + M +P+ ++W +LL C + + ++L E ++ L+ D +G +V+L
Sbjct: 327 FIEEALDIVAGMNCRPDAIIWRSLLDACCKKNAGLELTEAMAKLALEVPDDAVSGVYVLL 386
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
S +YA A+RW DV VR+LM GVKK PG+SSI +DG+VH+FVAGD +HPQ+E I++
Sbjct: 387 SRVYASAQRWNDVGMVRRLMVEEGVKKEPGFSSIEMDGLVHQFVAGDTSHPQSEAIYEKL 446
Query: 250 EKLLDGMKLKGYIPNTS-VVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKN 308
+++ + GY P+ S L+ + K L HSE+LA++FGL+N PG PIRI+KN
Sbjct: 447 DEIQLKLTSAGYKPDLSEAPLVASIDNAKGAALRLHSERLAISFGLLNATPGAPIRILKN 506
Query: 309 LRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
LRVC+DCH KLIS++ EI+VRDR RFH F+ GSCSC DYW
Sbjct: 507 LRVCKDCHTISKLISKLYGVEIIVRDRIRFHHFKDGSCSCKDYW 550
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 8/138 (5%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI-EI 75
V N+L+ +Y CG A +F + +R++ +W+ + L +G AL F +M +
Sbjct: 101 VANSLLHLYSSCGLPGAALDLFRRIPDRSLVSWNTAVDALVGNGDHLAALDLFREMQRDT 160
Query: 76 GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYG-------IIPQIEHYGCMVDLLS 128
+ P+ T +L AC G + G + E G + + +VDL
Sbjct: 161 ELAPDAYTVQSVLGACAGAGALSLGVYAHALLLRELGGDGDGEAVSRDMLINNSLVDLYG 220
Query: 129 RAGFLQEAYEFIRNMPIK 146
+ G L+ A + MP +
Sbjct: 221 KCGALELAQQVFDRMPAR 238
>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 658
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 166/356 (46%), Positives = 236/356 (66%), Gaps = 4/356 (1%)
Query: 1 RVHEYSNQSGFRRN--IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAI 58
R + + +SG+ + + + + LIDMY KCG +E A VF+ M + VF++S+MI GLA
Sbjct: 303 RAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLAT 362
Query: 59 HGQAKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
HG+A+EAL F+ M+ + IKPN VTF+G L AC H G VD+GR+ F SM +G+ P
Sbjct: 363 HGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTR 422
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
+HY CMVDLL RAG LQEA E I+ M ++P+G VWGALLG CR+H N D+AE A+ L +
Sbjct: 423 DHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAEHLFE 482
Query: 178 LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWS-SITVDGVVHEFVAGD 236
L+P G +++LSN+Y+ A W V VRKL++ G+KKTP S + +G +H+F G+
Sbjct: 483 LEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGN 542
Query: 237 ETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMN 296
HP ++KI E+L++ + GY P+ S V D+ + K L +H+EKLAL F L+
Sbjct: 543 LNHPMSKKIQDKLEELVERLTALGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLT 602
Query: 297 TPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T I+IMKNLR+C+DCH +L SE+ R I++RD RFH F++G+CSCGD+W
Sbjct: 603 TNRDYTIKIMKNLRMCQDCHMFMRLASEVTGRVIIMRDNMRFHHFRSGACSCGDFW 658
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 33/180 (18%)
Query: 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWS------------------------ 50
+ V NT+IDMYVKCG + AR+VF EM ER V +W+
Sbjct: 185 VYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPT 244
Query: 51 -------AMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF 103
AM+ G A + + +EAL F++M + GI+ + VT G + AC +G R
Sbjct: 245 KDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRA 304
Query: 104 F-YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ + Y + ++D+ S+ G ++EA +M K N + +++ G H
Sbjct: 305 VQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNK-NVFSYSSMILGLATH 363
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 4/181 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGA--RRVFIEMEERTVFTWSAMIQGLAI 58
++H + + G ++ + LI K G RRV ++ R F W+A+I+G I
Sbjct: 68 QIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQFRNPFLWTAVIRGYTI 127
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
G+ EA+ + M + I P TF LL ACG MG ++ GR+ F++ T +
Sbjct: 128 EGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQ-FHAQTFRLRGFCFVY 186
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
M+D+ + G + A + MP + + + W L+ N++ A + L
Sbjct: 187 VGNTMIDMYVKCGSIVCARKVFDEMPER-DVISWTELIAAYARVGNMESAADLFESLPTK 245
Query: 179 D 179
D
Sbjct: 246 D 246
>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 882
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 161/344 (46%), Positives = 230/344 (66%), Gaps = 1/344 (0%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G+ +++ N LI+MY KCGCLE + RVF M R V TW+ MI ++G+ ++AL +F
Sbjct: 539 GYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETF 598
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
M + GI P+ V FI +++AC H G VDEG F M T Y I P IEHY C+VDLLSR
Sbjct: 599 ADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSR 658
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
+ + +A EFI+ MPIKP+ +W ++L CR +++ AE SR++ +L+P + GY ++
Sbjct: 659 SQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILA 718
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
SN YA +W+ V+ +RK +++ + K PG+S I V VH F +GD++ PQ+E I++
Sbjct: 719 SNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSL 778
Query: 250 EKLLDGMKLKGYIPNTSVVLLDI-EEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKN 308
E L M +GYIP+ V ++ EE+EK + + HSE+LA+ FGL+NT PGTP+++MKN
Sbjct: 779 EILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKN 838
Query: 309 LRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
LRVC DCH KLIS+IV REI+VRD NRFH F+ G+CSC D W
Sbjct: 839 LRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 124/285 (43%), Gaps = 52/285 (18%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V+E GF ++ V N L+DMY + G L AR+VF EM R + +W+++I G + HG
Sbjct: 128 VYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGY 187
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG--------------------- 100
+EAL ++++ I P+ T +L A G++ V +G
Sbjct: 188 YEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNG 247
Query: 101 --------------RRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE-FIRNMP- 144
RR F M + Y M+ + ++E+ F+ N+
Sbjct: 248 LVAMYLKFRRPTDARRVFDEMDVRDSV-----SYNTMICGYLKLEMVEESVRMFLENLDQ 302
Query: 145 IKPNGVVWGALLGGCRVHKNIDLAEEA-SRQLDQLDPLNNGYHVVLSNIYAEAERWEDVA 203
KP+ + ++L C +++ LA+ + L L + +L ++YA + D+
Sbjct: 303 FKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYA---KCGDMI 359
Query: 204 RVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQM 248
R + ++ K T W+SI + G + +GD +A K+F+M
Sbjct: 360 TARDVFNSMECKDTVSWNSI-ISGYIQ---SGDLM--EAMKLFKM 398
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 77/158 (48%), Gaps = 2/158 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
++ Y ++GF V N LID+Y KCG + AR VF ME + +W+++I G G
Sbjct: 329 IYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGD 388
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ F M+ + + + +T++ L+ + + G+ +S + GI +
Sbjct: 389 LMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKG-LHSNGIKSGICIDLSVSN 447
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
++D+ ++ G + ++ + +M + V W ++ C
Sbjct: 448 ALIDMYAKCGEVGDSLKIFSSMGTG-DTVTWNTVISAC 484
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 9/179 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYV----KCGCLEGARRVFIEMEERTVFTWSAMIQGL 56
R+H G + LID Y L RRV + V+ W+++I+
Sbjct: 25 RIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRV---SPAKNVYLWNSIIRAF 81
Query: 57 AIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ 116
+ +G EAL + K+ E + P+ TF ++ AC + + G Y + G
Sbjct: 82 SKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMG-DLVYEQILDMGFESD 140
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
+ +VD+ SR G L A + MP++ + V W +L+ G H + A E +L
Sbjct: 141 LFVGNALVDMYSRMGLLTRARQVFDEMPVR-DLVSWNSLISGYSSHGYYEEALEIYHEL 198
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 67/155 (43%), Gaps = 2/155 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +SG ++ V N LIDMY KCG + + ++F M TW+ +I G
Sbjct: 430 LHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGD 489
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
L +M + + P+ TF+ L C + G+ + +G +++
Sbjct: 490 FATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKE-IHCCLLRFGYESELQIGN 548
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
++++ S+ G L+ + M + + V W ++
Sbjct: 549 ALIEMYSKCGCLENSSRVFERMS-RRDVVTWTGMI 582
>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Glycine max]
Length = 747
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 162/344 (47%), Positives = 225/344 (65%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
SG I V N L+ +Y KCG +E + R+F EM +W+A++ G A G+A E L
Sbjct: 404 SGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRL 463
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
F M+ G KP+ VTFIG+L AC G V +G + F SM E+ IIP +HY CM+DL S
Sbjct: 464 FESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFS 523
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVV 188
RAG L+EA +FI MP P+ + W +LL CR H+N+++ + A+ L +L+P N +++
Sbjct: 524 RAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYIL 583
Query: 189 LSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQM 248
LS+IYA +WE+VA +RK MR+ G++K PG S I VH F A D+++P +++I+
Sbjct: 584 LSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFSDQIYSE 643
Query: 249 WEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKN 308
EKL M +GY+P+ + VL D+++ EK K L HSEKLA+ FGL+ PPG PIR++KN
Sbjct: 644 LEKLNYKMVQEGYVPDMNSVLHDVDDSEKIKMLNHHSEKLAIAFGLIFIPPGLPIRVVKN 703
Query: 309 LRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
LRVC DCH A K IS+I REI+VRD RFH F+ G CSCGD+W
Sbjct: 704 LRVCGDCHNATKYISKITQREILVRDAARFHLFKDGRCSCGDFW 747
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 85/158 (53%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y ++ ++ NI V + L+DMY KC ++ A VF +M + V +W+AM+ G +G
Sbjct: 295 QVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNG 354
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++EA+ F M GI+P+ T ++ +C ++ ++EG + F+ G+I I
Sbjct: 355 YSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQ-FHCRALVSGLISFITVS 413
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V L + G +++++ M + V W AL+ G
Sbjct: 414 NALVTLYGKCGSIEDSHRLFSEMSY-VDEVSWTALVSG 450
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 79/147 (53%), Gaps = 4/147 (2%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+N+ + NTLI ++C +E +R++F +M+E+ +W+AMI G +G +EA+ F +M
Sbjct: 206 KNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREM 265
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLLSRAG 131
++ + TF +L ACG + + EG++ Y + T+Y I +VD+ +
Sbjct: 266 RLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQ--DNIFVGSALVDMYCKCK 323
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ A R M K N V W A+L G
Sbjct: 324 SIKSAETVFRKMNCK-NVVSWTAMLVG 349
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 20/237 (8%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+RN+ NTL+ Y K CL RVF M R + +W+++I A G +++ ++N
Sbjct: 72 QRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNL 131
Query: 72 MIEIG------IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125
M+ G I + + + C H+G G ++G + +VD
Sbjct: 132 MLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGH------VVKFGFQSYVFVGSPLVD 185
Query: 126 LLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL--DQLDPLNN 183
+ S+ G + A + MP K N V++ L+ G I E SRQL D + +
Sbjct: 186 MYSKTGLVFCARQAFDEMPEK-NVVMYNTLIAGLMRCSRI----EDSRQLFYDMQEKDSI 240
Query: 184 GYHVVLSNIYAEAERWEDVARVRKL-MRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
+ +++ E + R++ + NL + + S +T G V G + H
Sbjct: 241 SWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVH 297
>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Vitis vinifera]
Length = 881
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 156/351 (44%), Positives = 234/351 (66%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ ++ +I V +++IDMY K GC+ ++R+F + E+ V +W+ +I G IHG+
Sbjct: 531 LHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGR 590
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEAL F KM+ +G+KP+ TF G+L AC H G V++G +F M + I P++EHY
Sbjct: 591 GKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYT 650
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VD+L RAG + +A I MP P+ +W +LL CR+H N+ L E+ + +L +L+P
Sbjct: 651 CVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPE 710
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+V++SN++A + +W+DV RVR M+++G++K G S I V G VH F+ GDE P+
Sbjct: 711 KPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPE 770
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E++ + W +L + GY P+T VL D+EE++K L HSEKLA++FGL+NT G
Sbjct: 771 LEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGL 830
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P+R+ KNLR+C DCH A K IS++VNR+IVVRD RFH F+ G CSCGDYW
Sbjct: 831 PVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 881
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 95/192 (49%), Gaps = 13/192 (6%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + ++ V N LI MY KCG +E A +VF M ER + +W+++I G + +G
Sbjct: 123 IHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGF 182
Query: 62 AKEALTSFNKMI--EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+E+ +F +M+ E P+ T + +L C +++G + + + G+ ++
Sbjct: 183 LQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMA-VHGLAVKLGLNEELMV 241
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG-------CRVHKNID--LAEE 170
++D+ S+ FL EA + + + K N V W +++GG CR + E+
Sbjct: 242 NNSLIDMYSKCRFLSEA-QLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTED 300
Query: 171 ASRQLDQLDPLN 182
A + D+ LN
Sbjct: 301 AKMKADEFTILN 312
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H YS + G + N V N I Y +CG L + RVF M+ +TV +W+A++ G A +
Sbjct: 329 LHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSD 388
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM 94
++AL + +M + G+ P+ T LL AC M
Sbjct: 389 PRKALDLYLQMTDSGLDPDWFTIGSLLLACSRM 421
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 83/161 (51%), Gaps = 6/161 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNT-LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
R+HE + S N V NT +I MY CG +R VF ++ + +F W+A++ +
Sbjct: 19 RLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRN 78
Query: 60 GQAKEALTSFNKMIEIGI-KPNGVTFIGLLHACGHMGWVDEGR-RFFYSMTTEYGIIPQI 117
++A++ F+++I + KP+ T ++ AC G +D G + + M T+ ++ +
Sbjct: 79 ELFEDAMSIFSELISVTEHKPDNFTLPCVIKACA--GLLDLGLGQIIHGMATKMDLVSDV 136
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + + G ++EA + +MP + N V W +++ G
Sbjct: 137 FVGNALIAMYGKCGLVEEAVKVFEHMP-ERNLVSWNSIICG 176
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 79/164 (48%), Gaps = 8/164 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ ++G + + +L+ +Y+ CG A+ +F ME R++ +W+ MI G + +G
Sbjct: 430 IHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGL 489
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ F +M+ GI+P + + + AC + + G+ + + + I
Sbjct: 490 PDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKE-LHCFALKAHLTEDIFVSS 548
Query: 122 CMVDLLSRAGFL---QEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++ G + Q ++ +R + W ++ G +H
Sbjct: 549 SIIDMYAKGGCIGLSQRIFDRLREKDVAS----WNVIIAGYGIH 588
>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 795
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 158/352 (44%), Positives = 227/352 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G + N LI MY +CG +E A VF+ M +W+AMI LA HG
Sbjct: 444 QIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHG 503
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+ F +M++ I P+ +TF+ +L AC H G + EGR +F +M T YGI P +HY
Sbjct: 504 HGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHY 563
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
++DLL RAG +A I++MP + +W ALL GCR+H N++L +A+ +L +L P
Sbjct: 564 ARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIP 623
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+G +++LSN+YA +W++VARVR LMR GVKK PG S + V+ +VH F+ D HP
Sbjct: 624 GQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVEVENMVHVFLVDDARHP 683
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ + ++ ++L++ MK GY+P+T VL D+E + KE L HSEKLA+ +G+M P G
Sbjct: 684 EVQAVYTYLQQLVNEMKKLGYVPDTKFVLHDMESEHKEHSLSTHSEKLAVVYGIMKLPLG 743
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR+ KNLR+C DCH AFK IS++V REIVVRDR RFH F+ G CSCG+YW
Sbjct: 744 ATIRVFKNLRICGDCHNAFKYISKVVEREIVVRDRKRFHHFKNGECSCGNYW 795
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 6/166 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R+I N ++ YV +E A +F EM ER V TW+ MI GLA +G +E L FN+M
Sbjct: 355 RDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQM 414
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
G++P F G + AC +G +D G++ +S G + ++ + SR G
Sbjct: 415 KSEGLEPCDYAFAGAITACSVLGSLDNGQQ-IHSQVIRLGHDSGLSAGNALITMYSRCGV 473
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASRQ 174
++ A MP + V W A++ H K I+L E+ ++
Sbjct: 474 VESAESVFLTMPYV-DSVSWNAMIAALAQHGHGVKAIELFEQMMKE 518
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 103/239 (43%), Gaps = 19/239 (7%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
T+I YV+ L AR + + W+AMI G G +EA +F +M +GI+
Sbjct: 221 TTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQ 280
Query: 79 PNGVTFIGLLHACGH----MGWVDEGRRFF-YSMTTEYGIIPQIEHY-----GCMVDLLS 128
+ T+ L+ ACG MG + GR+ Y + T ++ H+ ++ +
Sbjct: 281 EDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRT---VVEPSHHFVLSVNNALITFYT 337
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVV 188
+ + EA MP++ + + W A+L G + N EEA+ ++ N V
Sbjct: 338 KYDRMIEARRVFDKMPVR-DIISWNAVLSG---YVNAQRIEEANSIFSEMPERNVLTWTV 393
Query: 189 LSNIYAEAERWEDVARVRKLMRNLGVKKT--PGWSSITVDGVVHEFVAGDETHPQAEKI 245
+ + A+ E+ ++ M++ G++ +IT V+ G + H Q ++
Sbjct: 394 MISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRL 452
Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 94/232 (40%), Gaps = 14/232 (6%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + SGF+ N + N LI++Y K + AR++F ++ + + + ++ + G
Sbjct: 27 VHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSSGN 86
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K A FN + I+ + V++ ++ A H F M YG +P +
Sbjct: 87 VKLAQQLFNA-TPLTIR-DTVSYNAMITAYSHGNDGHAALNLFVQM-KRYGFLPDPFTFS 143
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGV----VWGALL------GGCRVHKNIDLAEEA 171
++ LS + + + IK + V ALL + K+ L A
Sbjct: 144 SVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASA 203
Query: 172 SRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSI 223
+ D+ P N Y + + A R +D+ R+L+ L W+++
Sbjct: 204 RKVFDE-TPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAM 254
>gi|302805077|ref|XP_002984290.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
gi|300148139|gb|EFJ14800.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
Length = 448
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 160/351 (45%), Positives = 227/351 (64%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ +G R + V L++MY KCG L AR VF +ME V W+A++ G A HG
Sbjct: 99 IHQNLVANGLDRELIVATALVNMYAKCGKLVEAREVFDQMEGMDVVAWTAIVAGSAQHGH 158
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+E+ +M GIKPN VTF+ L+ AC H G++DE R F +M ++G P EH+
Sbjct: 159 IEESKDLMRRMELEGIKPNNVTFLSLVFACSHSGYLDEARDCFIAMA-DHGFFPLPEHFR 217
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C++DLL R G L+EA E I MP +P W +L CR+ K++ AE A+ + +++P
Sbjct: 218 CVIDLLGRGGRLEEAQEVIDTMPFEPGLTAWLTMLSACRLQKDVLRAEIAAEKCYEIEPT 277
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++++SN+YA ERW+DV +VR+LM GVKK PG S I V +HEF A +++HPQ
Sbjct: 278 RPSAYLLMSNLYAALERWDDVKKVRRLMERRGVKKEPGLSCIEVKNRLHEFGAANKSHPQ 337
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ I++ KL +K GY+P+TS+VL +++E+ K+ L+ HSE+LA+ +GL+NTPPGT
Sbjct: 338 KDLIYEELRKLTLEIKEAGYVPDTSLVLHNVDEETKQATLFHHSERLAVVYGLINTPPGT 397
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ ++ NLR+C DCH AFK IS I NREIVVRD NRFH F G CSC DYW
Sbjct: 398 SLCVVNNLRMCSDCHTAFKYISTISNREIVVRDANRFHTFATGGCSCKDYW 448
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 3/185 (1%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G V +L++MY +C L AR VF + + TW+A++ A G KEAL F
Sbjct: 6 GLEAETVVGTSLVNMYGRCHSLGNARLVFERIPCKDAITWNAIVTAYAQDGYGKEALEIF 65
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+M + G+K TFI +L AC + GR ++ G+ ++ +V++ ++
Sbjct: 66 QRMQQEGVKTGSATFISVLEACASTSALALGRVIHQNLVAN-GLDRELIVATALVNMYAK 124
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
G L EA E M + V W A++ G H +I+ +++ R++ +L+ + L
Sbjct: 125 CGKLVEAREVFDQME-GMDVVAWTAIVAGSAQHGHIEESKDLMRRM-ELEGIKPNNVTFL 182
Query: 190 SNIYA 194
S ++A
Sbjct: 183 SLVFA 187
>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 692
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 162/352 (46%), Positives = 234/352 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + GF N+ V N LIDMY KC + AR VF + R V +W+ M+ G A HG
Sbjct: 341 QLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHG 400
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+EAL +++M+ G KPN VTF+GL++AC H G V +GR+ F SM EYGI P+++HY
Sbjct: 401 RAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHY 460
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C +DLLSR+G L EA E + MP +P+ WGALL C +K+ ++ S +L +L P
Sbjct: 461 TCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRP 520
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +++LSN+YA +W+ VA+VRK M L ++K PG+S I F AG+
Sbjct: 521 KDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLD 580
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
E+I E+++ M+ +GY+P+TS V+ D+EE EKE L+ HSE+LA+ FGL+ +PPG
Sbjct: 581 VREEIMVFLEEMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPG 640
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ IR++KNLRVC DCH KLISEI +R+IVVRD +RFH F+ G CSC ++W
Sbjct: 641 SVIRVVKNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 692
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + S + + V ++L+DMY KCG + R+VF M + W+A++ G A +G
Sbjct: 208 QLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNG 267
Query: 61 QAKEALTSFNKM 72
+++EAL F M
Sbjct: 268 RSEEALQLFRSM 279
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 6/167 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+N V L+ Y G E A ++F M R +F W+A+I GL G++ A+ F +M
Sbjct: 251 KNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEM 310
Query: 73 IEIGIKPNGVTFIGL-LHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
G++ + + + + + GR+ S T G + + ++D+ S+
Sbjct: 311 RRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGS-TMRLGFLSNMIVGNALIDMYSKCS 369
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ A E + + + + W ++ G H AEEA D++
Sbjct: 370 DILSAREVFEGITFR-DVISWTTMVVGEAQHGR---AEEALALYDRM 412
>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Brachypodium distachyon]
Length = 642
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 163/342 (47%), Positives = 224/342 (65%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
+ R++ + N L+DMY KCGCL A +F M +R V +WS MI GLA +G++ EAL F+
Sbjct: 301 YDRDLILHNALLDMYCKCGCLLDADALFSRMHDRDVISWSTMISGLAQNGRSVEALKVFD 360
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
M G PN +T +G+L AC H G V++G +F SM +GI P+ EH CMVDLL RA
Sbjct: 361 LMKAEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMDKLFGIQPEREHCNCMVDLLGRA 420
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190
G L EA +FI M +P+ V+W LLG CR+HKN LA A+ ++ +L+P + G ++LS
Sbjct: 421 GKLDEAMKFIGEMKFEPDSVIWRTLLGACRMHKNATLASYAATEILKLEPEDQGARILLS 480
Query: 191 NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWE 250
NIYA+ +W + + K MR+ GVKK PG S I + +VH F+AG+ +HP +++I Q
Sbjct: 481 NIYADLRQWSNAEKSWKTMRDQGVKKEPGRSWIELGKLVHVFIAGELSHPCSDRIVQELN 540
Query: 251 KLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLR 310
+L+ K GY+P T VL D+ ++KE L HSEKLA+ FG MN+ G P+RIMKNLR
Sbjct: 541 RLIRRAKDLGYVPQTEFVLQDLGTEQKEDLLKYHSEKLAIAFGTMNSMEGKPVRIMKNLR 600
Query: 311 VCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+C DCHA KL+S+ + I++RD RFH FQ G CSCGDYW
Sbjct: 601 ICGDCHAFAKLVSKTEGKAIIIRDPVRFHHFQHGVCSCGDYW 642
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 6/143 (4%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLA-IHGQAKEALTSFNKMIEI 75
V N+L+ MY K G L+ A +F M +R V +W+ ++ LA G+ KEAL +M
Sbjct: 109 VSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEMRRD 168
Query: 76 GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE 135
G+ N TF +L ACG G + ++ + G+ + ++D + G L
Sbjct: 169 GVAANSYTFSSVLGACGTPGVLAA----MHADIIKVGLDSDVFVRSSLIDAYMKLGDLDS 224
Query: 136 AYEFIRNMPIKPNGVVWGALLGG 158
M + + VVW +++ G
Sbjct: 225 GRGVFDEM-VTCDLVVWNSIIAG 246
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 4/149 (2%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G ++ V ++LID Y+K G L+ R VF EM + W+++I G A G A+ F
Sbjct: 201 GLDSDVFVRSSLIDAYMKLGDLDSGRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELF 260
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+M E G N T +L AC M ++ GR+ ++ +Y + + ++D+ +
Sbjct: 261 MRMKESGFLANQGTLTSVLRACTGMVMLEVGRQ-VHAHVLKYD--RDLILHNALLDMYCK 317
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
G L +A M + + + W ++ G
Sbjct: 318 CGCLLDADALFSRMHDR-DVISWSTMISG 345
>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At2g01510
gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 825
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 157/353 (44%), Positives = 234/353 (66%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + +SG N+ + L+DMY KCG ++ A +VF EM +R +W+A+I A +G
Sbjct: 473 QLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNG 532
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ A+ +F KMIE G++P+ V+ +G+L AC H G+V++G +F +M+ YGI P+ +HY
Sbjct: 533 DGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHY 592
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DLL R G EA + + MP +P+ ++W ++L CR+HKN LAE A+ +L ++
Sbjct: 593 ACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEK 652
Query: 181 LNNGY-HVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
L + +V +SNIYA A WE V V+K MR G+KK P +S + V+ +H F + D+TH
Sbjct: 653 LRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTH 712
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P ++I + +L ++ +GY P+TS V+ D++E+ K + L HSE+LA+ F L++TP
Sbjct: 713 PNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPE 772
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PI +MKNLR C DCHAA KLIS+IV REI VRD +RFH F G CSCGDYW
Sbjct: 773 GCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 2/144 (1%)
Query: 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
+ V N+L+DMY KC E A +F + +RT +W+A+I G G L F KM
Sbjct: 386 LHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRG 445
Query: 75 IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ 134
++ + TF +L A + G++ ++ G + + +VD+ ++ G ++
Sbjct: 446 SNLRADQSTFATVLKASASFASLLLGKQ-LHAFIIRSGNLENVFSGSGLVDMYAKCGSIK 504
Query: 135 EAYEFIRNMPIKPNGVVWGALLGG 158
+A + MP + N V W AL+
Sbjct: 505 DAVQVFEEMPDR-NAVSWNALISA 527
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 4/159 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S +GF R+ V N ++D Y K + R +F EM E +++ +I +
Sbjct: 271 QLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQAD 330
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q + +L F +M +G F +L ++ + GR+ I H
Sbjct: 331 QYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQAL--LATADSILHV 388
Query: 121 G-CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
G +VD+ ++ +EA +++P + V W AL+ G
Sbjct: 389 GNSLVDMYAKCEMFEEAELIFKSLPQRTT-VSWTALISG 426
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+N NT+I +VK G + AR +F M +RTV TW+ ++ A + EA F +M
Sbjct: 77 KNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQM 136
Query: 73 IEIG--IKPNGVTFIGLLHAC 91
P+ VTF LL C
Sbjct: 137 CRSSSCTLPDHVTFTTLLPGC 157
>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 707
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 171/353 (48%), Positives = 231/353 (65%), Gaps = 2/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH +S F +++ V + LI MYVKCG L A+ +F + V W++MI G + HG
Sbjct: 356 QVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHG 415
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F+ M G++P+ VTFIG+L AC + G V EG F +M Y + P IEHY
Sbjct: 416 LGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHY 475
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG + EA E + MP++P+ +VWGALLG CR H +DLAE A +L +L+P
Sbjct: 476 ACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEP 535
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGD-ETH 239
N G +V+LS++YA RW DV +RK + N V K PG S I V+ VH F GD ++H
Sbjct: 536 KNAGPYVLLSHMYATKGRWRDVEVLRKKI-NRRVIKFPGCSWIEVEKKVHMFTGGDSKSH 594
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ I QM EKL ++ GY P+ S VL D++E+EK L HSE+LA+ +GL+ P
Sbjct: 595 PEQHMITQMLEKLSGFLREAGYCPDGSFVLHDVDEEEKTHSLGYHSERLAVAYGLLKVPE 654
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIR+MKNLRVC DCH+A KLI+++ REI++RD NRFH F+ GSCSC D+W
Sbjct: 655 GMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFHHFKDGSCSCKDFW 707
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 78/172 (45%), Gaps = 14/172 (8%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+RN N +I YVK G + AR+VF M ER V +W++M++G G +EA F +
Sbjct: 80 QRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWE 139
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M + V GLL +D+ ++ F M E ++ M+ + G
Sbjct: 140 MPRRNVVSWTVMIGGLLKESR----IDDAKKLF-DMIPEKDVVVVTN----MIGGYCQVG 190
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183
L EA E M ++ N W ++ G + +D+A R+L ++ P N
Sbjct: 191 RLDEARELFDEMKVR-NVFTWTTMVSGYAKNGRVDVA----RKLFEVMPERN 237
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 99/217 (45%), Gaps = 24/217 (11%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
R++ + I Y + G + AR+VF + +RT+ +W+AM+ + ++AL F+
Sbjct: 17 RSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFD 76
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
+M + N V+F G++ G V + R+ F M + + MV +
Sbjct: 77 QMPQ----RNTVSFNGMISGYVKNGMVADARKVFDVMPER-----NVVSWTSMVRGYVQE 127
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190
G ++EA + MP + N V W ++GG ID A++ + + D VV++
Sbjct: 128 GMVEEAEKLFWEMP-RRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDV------VVVT 180
Query: 191 NI---YAEAERWEDVARVRKLMRNLGVKKTPGWSSIT 224
N+ Y + R ++ R+L + V+ W+++
Sbjct: 181 NMIGGYCQVGRLDE---ARELFDEMKVRNVFTWTTMV 214
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
Query: 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
I CN +I + G + AR +F M+ER TW+AMI+ G EAL F +M
Sbjct: 269 IVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQR 328
Query: 75 IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMT-TEYGIIPQIEHYGCMVDLLSRAGFL 133
G+ N + I +L C + +D GR+ + +E+ + ++ + + G L
Sbjct: 329 EGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFD--QDLYVASVLITMYVKCGDL 386
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
A + I N + + V+W +++ G H L EEA
Sbjct: 387 VRA-KGIFNRFLFKDVVMWNSMITGYSQH---GLGEEA 420
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 40/134 (29%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+++ V +I Y + G L+ AR +F EM+ R VFTW+ M+ G A +G+ A K+
Sbjct: 174 KDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVA----RKL 229
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E+ + N V++ +L MG+ GR
Sbjct: 230 FEVMPERNEVSWTAML-----MGYTQSGR------------------------------- 253
Query: 133 LQEAYEFIRNMPIK 146
++EA+E MP+K
Sbjct: 254 MKEAFELFEAMPVK 267
>gi|297720639|ref|NP_001172681.1| Os01g0884800 [Oryza sativa Japonica Group]
gi|20161229|dbj|BAB90156.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|255673935|dbj|BAH91411.1| Os01g0884800 [Oryza sativa Japonica Group]
Length = 517
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 163/352 (46%), Positives = 222/352 (63%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + +SG + V N+L+ MY K G L AR VF M R TW+A+I G A +G+
Sbjct: 166 VHAAAVRSGHEPFLSVGNSLVSMYAKTGSLRDARTVFDAMRSRCAITWTALIVGYAQNGR 225
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+E+L + M G +P+ VTF+GLL AC H G +D GR F SM +E+GI P +HY
Sbjct: 226 GRESLAVYADMARSGCRPDYVTFVGLLFACSHAGLLDAGRAHFQSMQSEHGISPGPDHYA 285
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG L EA + + P + VW ALL CR H+N LAE A+ + +LDP
Sbjct: 286 CMVDLLGRAGRLGEAVDLLDRSPAAELDATVWKALLAACRTHRNAALAERAAGMVWRLDP 345
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +V+LSN+Y+ A RW DVARVR LMR+ G+ K PG S + V GV H F AGD H
Sbjct: 346 TDAMPYVMLSNLYSRARRWGDVARVRALMRSRGISKEPGCSWVVVAGVTHVFHAGDRDHQ 405
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+A +I++ E++ ++ +G++P+T L D + +E L H E+LA+ FGL+ P
Sbjct: 406 RAAEIYRKAEEMAARIRARGHVPDTEWALQDEAPEGREMGLAHHGERLAVAFGLLAVPAA 465
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLRVC DCHAA K+++E+ REI++RD N FH + GSCSCGDYW
Sbjct: 466 APIRVYKNLRVCGDCHAAIKMVAEVYGREIILRDSNCFHHMKDGSCSCGDYW 517
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 2/145 (1%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ V N L+D Y K L AR VF EM R V TW++++ GLA G A+ ++ M+
Sbjct: 77 HLHVANALVDAYAKLSRLGAARAVFDEMPRRDVVTWTSLVTGLARAGSHGLAVRAYRDMV 136
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
G+ + +L +C ++ GR ++ G P + +V + ++ G L
Sbjct: 137 AAGVATDEFAVAAVLSSCAGSTALELGRS-VHAAAVRSGHEPFLSVGNSLVSMYAKTGSL 195
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGG 158
++A M + + W AL+ G
Sbjct: 196 RDARTVFDAMRSR-CAITWTALIVG 219
>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
Length = 578
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 166/353 (47%), Positives = 232/353 (65%), Gaps = 2/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIH 59
++H Y F N +VCN +IDMY KCG ++ A VF M + + TW+ MI A+H
Sbjct: 227 KIHGYIKVERFDMNAQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMH 286
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G+ +AL F KM + G+ P+ V+++ +L AC H G V+EG R F SM G+ P ++H
Sbjct: 287 GEGCKALELFEKMDQSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMEN-CGVKPNVKH 345
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YG +VDLL RAG L EAY+ + +MP P+ V+W LLG R H+N+++AE SR+L ++
Sbjct: 346 YGSVVDLLGRAGRLHEAYDIVNSMPTVPDIVLWQTLLGASRTHRNVEIAETVSRKLVEMG 405
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
+ G V+LSN+YA ERW DV RVR+ M+N VKK PG S I +GV+H+F D++H
Sbjct: 406 SNHCGDFVLLSNVYAARERWADVGRVREAMKNRDVKKVPGLSYIEGNGVIHKFYNADKSH 465
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
+I+ +++ +K GY+ TS VL DI E++KE L HSEKLA+ FGL++T
Sbjct: 466 ESWREIYAKLDEIRFRVKEYGYVAETSFVLHDIGEEDKENVLGHHSEKLAVAFGLISTSE 525
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GTPI+++KNLR+C DCH KLIS+I +REI+VRDR RFH F+ G CSC DYW
Sbjct: 526 GTPIQVIKNLRICGDCHFVIKLISKIYDREIIVRDRVRFHRFKEGFCSCRDYW 578
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 122/261 (46%), Gaps = 12/261 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + GF + + TL+D+Y K G ++ A +VF EM +R + +W+A+I G A
Sbjct: 126 QIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGS 185
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEH 119
+ EAL+ F +M G KPN ++ +G L AC +G EG + Y + + Q+
Sbjct: 186 KPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQV-- 243
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ-- 177
++D+ ++ GF+ +AY +M + + V W ++ +H A E ++DQ
Sbjct: 244 CNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSG 303
Query: 178 LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD-----GVVHEF 232
+ P + Y VL E+ R+ M N GVK VD G +HE
Sbjct: 304 VSPDDVSYLAVLCAC-NHGGLVEEGFRLFNSMENCGVKPNVKHYGSVVDLLGRAGRLHEA 362
Query: 233 VAGDETHPQAEKIFQMWEKLL 253
+ P I +W+ LL
Sbjct: 363 YDIVNSMPTVPDIV-LWQTLL 382
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 163/356 (45%), Positives = 230/356 (64%), Gaps = 4/356 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ + NI V N LIDMY KCG L A +F M +R VFTW++MI G +HG
Sbjct: 623 QMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHG 682
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EA+T F M+ G++PN +TF+GLL C H G V EG ++F+ M++E+ + P I+HY
Sbjct: 683 RGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHY 742
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDL RAG L+EA E IR+ P + + V+W LLG C++H+N+++ E A R L QL
Sbjct: 743 GCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGS 802
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
L G V+LS IYAEA+ + VAR+RKL+++ G+K TPGWS I V VH FV D++HP
Sbjct: 803 LGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHP 862
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEK----EKFLYRHSEKLALTFGLMN 296
+ +I++ E+++ L GY S ++ E + E HSEKLA+ +GL
Sbjct: 863 DSREIYRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLAR 922
Query: 297 TPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TP GT + I+KNLRVC DCH K +S+ +REI+VRDR RFH F+ G CSC ++W
Sbjct: 923 TPEGTSLLIVKNLRVCRDCHNFTKFVSKAFDREIIVRDRVRFHHFRGGHCSCKEFW 978
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 83/167 (49%), Gaps = 2/167 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + G+ +++ +C LI Y G +E A +VF EM R + +W++MI G
Sbjct: 523 VHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGL 582
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL +++M + +G T + LL +C H+G + G + + E ++ I
Sbjct: 583 HEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQ-MHRFAGERRLVENIFVGN 641
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++D+ ++ G L A +MP K + W +++ G VH D A
Sbjct: 642 ALIDMYAKCGSLASALSIFNSMP-KRDVFTWNSMIVGYGVHGRGDEA 687
>gi|242054799|ref|XP_002456545.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
gi|241928520|gb|EES01665.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
Length = 640
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 158/355 (44%), Positives = 231/355 (65%), Gaps = 4/355 (1%)
Query: 2 VHEYSNQ--SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
V Y Q GF N+++CN LI+ + +CG L A+++F EM +++ +W+A+I G +H
Sbjct: 286 VEHYVRQRIPGFHTNVQLCNALINFHARCGSLPRAQQLFDEMPRKSIVSWTALITGHGMH 345
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G A++ F +M+ GI+P+ V + L AC H G DEGRR+F +M + Y + P +EH
Sbjct: 346 GNGDVAVSLFERMVSEGIRPDNVAMVALFSACSHAGLYDEGRRYFSAMESVYKLRPTLEH 405
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CMVDLL RAG L+EA E I +MP+ +G VWGALLG C++HKN+D+ EEA ++ +L+
Sbjct: 406 YTCMVDLLGRAGRLEEARELISSMPMPADGAVWGALLGACKIHKNVDVGEEAFTRVIELE 465
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N GY+V++SNIY + + + VARVR +MR G+KK PG S + G VH F+A D +H
Sbjct: 466 PKNVGYYVLMSNIYTDTGQLDCVARVRAMMRERGLKKEPGCSYVEHKGRVHLFMADDHSH 525
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLD--IEEKEKEKFLYRHSEKLALTFGLMNT 297
PQA +I+++ +L +K K + + V +E+ + + HSEKLA+ FGL+NT
Sbjct: 526 PQARRIYELVIRLELMVKEKSGMRESEVAAAKGRMEKAAAQPLVGIHSEKLAVAFGLLNT 585
Query: 298 PPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G+ I ++KNLRVC DCH+ K++S NR +VRD +RFH F G CSC DYW
Sbjct: 586 EAGSEIVVIKNLRVCGDCHSFLKVVSATTNRAFLVRDASRFHRFDGGVCSCKDYW 640
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 9/176 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGA--RRVFIEM--EERTVFTWSAMIQGL 56
+VH + + G V N L+ Y + G A RRVF EM R + +W+A++
Sbjct: 177 QVHALAARVGLATETSVANCLMSTYARGGAFGAALARRVFDEMPLASRDLVSWNAVLSAH 236
Query: 57 AIHGQAKEALTSFNKMIE---IGIKPNGVTFIGLLHACGHMGWVDEGRRF-FYSMTTEYG 112
A +G A +AL + +M G++P+ VT +G+L + H+G G Y G
Sbjct: 237 AQNGLAVDALELYRRMRSPEGSGVEPDAVTIVGVLSSAAHLGARGVGFDVEHYVRQRIPG 296
Query: 113 IIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++ +++ +R G L A + MP K + V W AL+ G +H N D+A
Sbjct: 297 FHTNVQLCNALINFHARCGSLPRAQQLFDEMPRK-SIVSWTALITGHGMHGNGDVA 351
>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 162/344 (47%), Positives = 226/344 (65%), Gaps = 1/344 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y +SG + NTL+DMY K G + AR++F + +R V +W++++ A HG
Sbjct: 284 VHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGF 343
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA+ F +M +GI+PN ++F+ +L AC H G +DEG + Y + + GI+P+ HY
Sbjct: 344 GKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHY-YELMKKDGIVPEAWHYV 402
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+VDLL RAG L A FI MPI+P +W ALL CR+HKN +L A+ + +LDP
Sbjct: 403 TVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPD 462
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G HV+L NIYA RW D ARVRK M+ GVKK P S + ++ +H FVA DE HPQ
Sbjct: 463 DPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQ 522
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E+I + WE++L +K GY+P+TS V++ ++++E+E L HSEK+AL F L+NTPPG+
Sbjct: 523 REEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGS 582
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGS 345
I I KN+RVC DCH A KL S++V REI+VRD NRFH F+ S
Sbjct: 583 TIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDAS 626
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + QS FR +I + NTL++MY KCG LE AR+VF +M +R TW+ +I G + H +
Sbjct: 82 VHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDR 141
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHA--------CGHMGWVDEGRRFFYSMTTEYGI 113
+AL FN+M+ G PN T ++ A CGH + + G
Sbjct: 142 PCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQ---------LHGFCVKCGF 192
Query: 114 IPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ ++DL +R G + +A + + + N V W AL+ G
Sbjct: 193 DSNVHVGSALLDLYTRYGLMDDA-QLVFDALESRNDVSWNALIAG 236
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 84/162 (51%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + GF N+ V + L+D+Y + G ++ A+ VF +E R +W+A+I G A
Sbjct: 182 QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRS 241
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++AL F M+ G +P+ ++ L AC G++++G ++ ++ + G
Sbjct: 242 GTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQG-KWVHAYMIKSGEKLVAFAG 300
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ +++G + +A + + K + V W +LL H
Sbjct: 301 NTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNSLLTAYAQH 341
>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Glycine max]
Length = 722
Score = 337 bits (865), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 170/356 (47%), Positives = 226/356 (63%), Gaps = 4/356 (1%)
Query: 1 RVHEYSNQSGFRRN-IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
+VH + +S N + V N L+ MY KCG + ARRVF M E + + ++MI G A H
Sbjct: 367 QVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQH 426
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G E+L F M++ I PN +TFI +L AC H G V+EG+++F M + I P+ EH
Sbjct: 427 GVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEH 486
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CM+DLL RAG L+EA I MP P + W LLG CR H N++LA +A+ + QL+
Sbjct: 487 YSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLE 546
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N +V+LSN+YA A RWE+ A V++LMR GVKK PG S I +D VH FVA D +H
Sbjct: 547 PYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSH 606
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLL---DIEEKEKEKFLYRHSEKLALTFGLMN 296
P ++I ++L MK GY+P+ L+ ++E EKE+ L HSEKLA+ FGL++
Sbjct: 607 PMIKEIHVYMGEILRKMKQAGYVPDIRWALVKDEEVEPDEKERRLLYHSEKLAVAFGLIS 666
Query: 297 TPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T PI ++KNLR+C DCH A KLIS I REI VRD +RFHCF+ G CSCGDYW
Sbjct: 667 TEEWVPILVVKNLRICGDCHNAIKLISAITGREITVRDTHRFHCFKEGHCSCGDYW 722
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 7/165 (4%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N+ NTLI+ Y K + AR+VF E+ + + +++ +I A G+ + AL F ++
Sbjct: 74 NVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVR 133
Query: 74 EIGIKPNGVTFIGLLHACG-HMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E+ +G T G++ ACG +G V + F + Y + + ++ SR GF
Sbjct: 134 ELRFGLDGFTLSGVIIACGDDVGLVRQLHCFV--VVCGYDCYASVNN--AVLACYSRKGF 189
Query: 133 LQEAYEFIRNMPIKP--NGVVWGALLGGCRVHKNIDLAEEASRQL 175
L EA R M + V W A++ C H+ A E R++
Sbjct: 190 LNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREM 234
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 10/190 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLA 57
++H + G+ V N ++ Y + G L ARRVF EM E R +W+AMI
Sbjct: 160 QLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACG 219
Query: 58 IHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
H + EA+ F +M+ G+K + T +L A + + G + F+ M + G
Sbjct: 220 QHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQ-FHGMMIKSGFHGNS 278
Query: 118 EHYGCMVDLLSR-AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLD 176
++DL S+ AG + E + + P+ V+W ++ G ++ DL+E+
Sbjct: 279 HVGSGLIDLYSKCAGGMVECRKVFEEIA-APDLVLWNTMISGFSQYE--DLSEDGIWCFR 335
Query: 177 QLDPLNNGYH 186
++ +NG+H
Sbjct: 336 EMQ--HNGFH 343
>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330 [Vitis vinifera]
Length = 1008
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 229/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y + G ++ + +++IDMYVKCG L A +F + ++R V W++MI G A+HG
Sbjct: 657 QVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHG 716
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q +EA+ F MI GI PN V+F+G+L AC H G ++EG ++F M YGI P EH+
Sbjct: 717 QGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHF 776
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDL RAG L E EFI N I VW + L CRVHKNI++ ++L +L+P
Sbjct: 777 TCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELEP 836
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ G +++ S+I A RWE+ A++R LM+ GVKK P S I + VH FV GD +HP
Sbjct: 837 FDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQSWIQLKNQVHSFVMGDRSHP 896
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q KI+ ++L+ +K GY + + V+ D+E+++++ L HSEKLA+ +G+++T PG
Sbjct: 897 QDTKIYSYLDELIGRLKEIGYSTDVTPVMQDVEQEQRQVLLGYHSEKLAIAYGIISTAPG 956
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPIR+MKNLRVC DCH K SE++ REI++RD +RFH F+ G CSC DYW
Sbjct: 957 TPIRVMKNLRVCIDCHNFIKYASELLGREIIIRDIHRFHHFKHGHCSCADYW 1008
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 87/183 (47%), Gaps = 29/183 (15%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVF------------- 47
++H + G + V N+LIDMY KCG +E A +F + + +
Sbjct: 541 QIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVE 600
Query: 48 --TWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFY 105
+WS+M+ G +G+ ++AL +F+ MI ++ + T ++ AC G ++ GR+
Sbjct: 601 SVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQV-- 658
Query: 106 SMTTEYGIIPQIEH------YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
+G I +I H ++D+ + G L +A+ I N N V+W +++ GC
Sbjct: 659 -----HGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAW-LIFNQAKDRNVVLWTSMISGC 712
Query: 160 RVH 162
+H
Sbjct: 713 ALH 715
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N L+++Y K LE A ++F E+ + VF+W+ +I G A G + + L F KM + G+
Sbjct: 325 NHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVC 384
Query: 79 PNGVTFIGLLHAC 91
PN T +L +C
Sbjct: 385 PNQFTLSIVLKSC 397
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 34/174 (19%), Positives = 71/174 (40%), Gaps = 32/174 (18%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWS----------- 50
+H + ++G + + N+++D YVKC C A ++F M E+ +W+
Sbjct: 410 IHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGD 469
Query: 51 --------------------AMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90
MI GL +G + AL KM+ G N +TF L
Sbjct: 470 MQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVL 529
Query: 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP 144
+ + G++ ++ + G++ ++D+ + G +++A +++P
Sbjct: 530 ASSLSVLGLGKQ-IHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLP 582
>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 565
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 165/353 (46%), Positives = 230/353 (65%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G + V ++LI MY KCGCL A + F E E+ WS+MI HG
Sbjct: 213 QIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHG 272
Query: 61 QAKEALTSFNKMIE-IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
Q EA+ FN M E ++ N V F+ LL+AC H G D+G F M +YG P ++H
Sbjct: 273 QGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKH 332
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y C+VDLL RAG L +A I++MPIKP+ V+W LL C +HKN ++A++ +++ ++D
Sbjct: 333 YTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQKVFKEILEID 392
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P ++ +V+L+N++A A+RW DV+ VRK MR+ VKK G S G VH+F GD +
Sbjct: 393 PNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQ 452
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
++++I+ ++L MKLKGY P+T+ VL D++E+EKE L +HSEKLA+ F LM P
Sbjct: 453 SKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPE 512
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIRI+KNLRVC DCH AFK IS I+NREI +RD +RFH F G CSCGDYW
Sbjct: 513 GAPIRIIKNLRVCSDCHVAFKYISVIMNREITLRDGSRFHHFINGKCSCGDYW 565
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 2/147 (1%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
++N N LI+ YV+ G L AR+VF EM +R + TW+AMI GL +E L+ F +
Sbjct: 22 KKNFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFRE 81
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M +G P+ T + + V G++ + +YG+ + + + R G
Sbjct: 82 MHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQ-IHGYAIKYGLELDLVVNSSLAHMYMRNG 140
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGG 158
LQ+ IR+MP++ N V W L+ G
Sbjct: 141 KLQDGEIVIRSMPVR-NLVAWNTLIMG 166
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 88/190 (46%), Gaps = 10/190 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y+ + G ++ V ++L MY++ G L+ V M R + W+ +I G A +G
Sbjct: 112 QIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNG 171
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ L + M G +PN +TF+ +L +C + +G++ ++ + G +
Sbjct: 172 CPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQ-IHAEAIKIGASSVVAVV 230
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNID--------LAEEAS 172
++ + S+ G L +A + + V+W +++ H D +AE+
Sbjct: 231 SSLISMYSKCGCLGDAAKAFSERE-DEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTE 289
Query: 173 RQLDQLDPLN 182
+++++ LN
Sbjct: 290 MEVNEVAFLN 299
>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 850
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 157/336 (46%), Positives = 220/336 (65%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V N LIDMY KCG + AR VF M E+ TW++++ G +HG +EAL F +M IG
Sbjct: 515 VSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIG 574
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
K +GVT + +L+AC H G +D+G +F M T++G+ P EHY C+VDLL RAG L A
Sbjct: 575 FKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAA 634
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
I MP++P VVW ALL CR+H ++L E A++++ +L N+G + +LSN+YA A
Sbjct: 635 LRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANA 694
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGM 256
RW+DV R+R LMR+ G+KK PG S + F GD+THP A++I+Q+ + +
Sbjct: 695 GRWKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRI 754
Query: 257 KLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCH 316
K GY+P T L D++++EK+ L+ HSEKLAL +G++ TP G IRI KNLRVC DCH
Sbjct: 755 KDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCH 814
Query: 317 AAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
AF +S I++ EI++RD +RFH F+ G CSC YW
Sbjct: 815 TAFTYMSRIIDHEIILRDSSRFHHFKNGLCSCKGYW 850
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 100/178 (56%), Gaps = 8/178 (4%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H S +GF N+ V N L+ MY +CG L AR+VF EM V +W+++I+ A G+
Sbjct: 150 HALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKP 209
Query: 63 KEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHY 120
K AL F+KM E G +P+ +T + +L C +G G++F +++T+E +I +
Sbjct: 210 KMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSE--MIQNMFVG 267
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
C+VD+ ++ G + EA NMP+K + V W A++ G + I E+A R +Q+
Sbjct: 268 NCLVDMYAKFGMMDEANTVFSNMPVK-DVVSWNAMVAG---YSQIGRFEDAVRLFEQM 321
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 7/151 (4%)
Query: 17 VCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
V N LIDMY KC ++ AR +F + +ER V TW+ MI G + HG A +AL ++M E
Sbjct: 409 VINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFE 468
Query: 75 --IGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLLSRAG 131
+PN T L AC + + G++ Y++ + +P C++D+ ++ G
Sbjct: 469 EDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVS-NCLIDMYAKCG 527
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ +A NM ++ N V W +L+ G +H
Sbjct: 528 DIGDARLVFDNM-MEKNEVTWTSLMTGYGMH 557
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 13/173 (7%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERT----VFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
N ++ Y + G E A R+F +M+E V TWSA I G A G EAL +M+
Sbjct: 299 NAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLS 358
Query: 75 IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG-------CMVDLL 127
GIKPN VT I +L C +G + G+ + +Y + + +G ++D+
Sbjct: 359 SGIKPNEVTLISVLSGCASVGALMHGKE-IHCYAIKYPMDLRKNGHGDENMVINQLIDMY 417
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVV-WGALLGGCRVHKNIDLAEEASRQLDQLD 179
++ + A ++ K VV W ++GG H + + A E ++ + D
Sbjct: 418 AKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEED 470
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 4/145 (2%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+ + + LI Y+ GCL A + + V+ W+++I+ +G+A + L+SF
Sbjct: 58 TLNLTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCL 117
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M + P+ TF + ACG + V G ++++ G + + +V + SR G
Sbjct: 118 MHSLSWTPDNYTFPFVFKACGEISSVRCGDS-SHALSRVTGFMSNVFVGNALVAMYSRCG 176
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALL 156
L +A + MP+ + V W +++
Sbjct: 177 SLSDARKVFDEMPVW-DVVSWNSII 200
>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
Length = 651
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 160/351 (45%), Positives = 222/351 (63%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH +SG + V L+DMY KCGC+ AR VF M R VF W+AMI GLA HG
Sbjct: 301 VHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGL 360
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++A+ F + I G+ P VTF+G+L+ C G V EGRR+F + +Y I P++EHYG
Sbjct: 361 GRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYG 420
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG + EA E I M I P+ V+WG +L C+ H +DL +L +LDP
Sbjct: 421 CMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELDPT 480
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++GY+V+LS IYA+A +W++V VRKLM + G K+ GWS + G VH+F+ GD H
Sbjct: 481 HSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEAHGKVHKFLVGDTYHKD 540
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ +I+ + + + GY+P+ S VL DI E+EK + HSE+LA+ +G + G+
Sbjct: 541 SVQIYDTLDMINKRLTEAGYVPDVSSVLHDIGEEEKVHAVKVHSERLAIAYGFIVLEAGS 600
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVC DCH K+++ + REI+VRD +RFH + G CSC DYW
Sbjct: 601 PIRIVKNLRVCGDCHEFSKMVTMVFQREIIVRDGSRFHHMKEGKCSCLDYW 651
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 9/194 (4%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ N ++ YV+ G + AR VF EM R +WS ++ G + + AL F M
Sbjct: 211 RDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNM 270
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+E G++PN + L A +G ++ G +F +++ G+ + +VD+ ++ G
Sbjct: 271 VEQGVRPNQAAVVTALSAAARLGLLEHG-KFVHNVVQRSGMPVCMNVGAALVDMYAKCGC 329
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHK-NIDLAEEASRQLDQ-LDPLNNGYHVVL- 189
+ A E M + + W A++ G H D E R + + L P N + VL
Sbjct: 330 VAVAREVFDGMR-RRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLN 388
Query: 190 ----SNIYAEAERW 199
S + AE R+
Sbjct: 389 GCSRSGLVAEGRRY 402
>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
Length = 787
Score = 337 bits (864), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 166/352 (47%), Positives = 227/352 (64%), Gaps = 28/352 (7%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++ F ++I V N LIDMY KCG ++ AR VF M ++ +W+AMI G ++HG
Sbjct: 464 QIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHG 523
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A C + G +D+G+ +F SM ++GI P IEHY
Sbjct: 524 LA----------------------------CANAGLLDQGQAYFTSMIQDHGIEPCIEHY 555
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMV LL R G L +A + I +P +P+ +VW ALLG C +H +I+L +++ + +++P
Sbjct: 556 TCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQHVLEMEP 615
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ HV+LSN+YA A+RW++VA VRK M+ GVKK PG S I G VH F GD +HP
Sbjct: 616 QDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHP 675
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ I M E L K GYIPN +VVLLD+E++EKE+ L+ HSE+LAL+FG++ TP G
Sbjct: 676 EVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSG 735
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+PIRIMKNLR+C DCHAA K IS++V REIVVRD NRFH FQ G CSCGDYW
Sbjct: 736 SPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 787
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFT-WSAMIQGLAIH 59
++H + + G ++ V N L+D+Y KCG +E + +F E R T W+ +I G
Sbjct: 362 QIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIVGHVQL 421
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G ++AL F M+E ++ VT+ L AC + ++ G + +S+T + I
Sbjct: 422 GDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQ-IHSLTVKTTFDKDIVV 480
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++ G +++A + ++ K + V W A++ G +H
Sbjct: 481 TNALIDMYAKCGSIKDA-RLVFDLMNKQDEVSWNAMISGYSMH 522
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 4/172 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + +S + ++ V L+D+Y K G ++ AR F E+ ++ V WS MI A Q
Sbjct: 262 VHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQ 321
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+KEA+ F +M + + PN TF +L AC M ++ G + + + G+ +
Sbjct: 322 SKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQ-IHCHVIKIGLHSDVFVSN 380
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR 173
++D+ ++ G ++ + P + + W ++ G H + E+A R
Sbjct: 381 ALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIVG---HVQLGDGEKALR 429
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 26/219 (11%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G N V LID Y CG ++ AR VF + + + +W+ M+ A +
Sbjct: 161 IHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDC 220
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-------YSMTTEYGII 114
KEAL F++M +G KPN TF + AC + D G+ Y + G+
Sbjct: 221 FKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGV- 279
Query: 115 PQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQ 174
++DL +++G + +A +P K + + W ++ + D ++EA
Sbjct: 280 -------ALLDLYTKSGDIDDARXAFEEIP-KKDVIPWSFMIAR---YAQSDQSKEAVEM 328
Query: 175 LDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213
Q+ +VL N + A + A + L NLG
Sbjct: 329 FFQMRQA-----LVLPNQFTFASVLQACATMEGL--NLG 360
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 102/269 (37%), Gaps = 42/269 (15%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N L++MYVK L A ++F EM ER ++ +IQG A + EA+ F ++ G +
Sbjct: 77 NILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHE 136
Query: 79 PNGVTFIGLLHA-----CGHMGW---------VDEGRRFF-YSMTTEYGIIPQIE----- 118
N F +L CG +GW E F ++ Y + +++
Sbjct: 137 LNPFVFTTILKLLVSMDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREV 196
Query: 119 ----------HYGCMVDLLSRAGFLQEAYEFIRNMPI---KPNGVVWGALLGGCRVHKNI 165
+ MV + +EA + M + KPN + ++ C +
Sbjct: 197 FDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAF 256
Query: 166 DLAEEASR-QLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSIT 224
D+ + L L+ V L ++Y ++ D+ R + K WS +
Sbjct: 257 DVGKSVHGCALKSRYELDLYVGVALLDLYTKS---GDIDDARXAFEEIPKKDVIPWSFM- 312
Query: 225 VDGVVHEFVAGDETHPQAEKIFQMWEKLL 253
+ + D++ E FQM + L+
Sbjct: 313 ----IARYAQSDQSKEAVEMFFQMRQALV 337
>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
Length = 635
Score = 337 bits (864), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 172/356 (48%), Positives = 234/356 (65%), Gaps = 8/356 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE-RTVFTWSAMIQGLAIHG 60
+H + ++G+ + V N LIDMY +CG + AR VF M+E R + +W++MI GLA+HG
Sbjct: 283 LHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHG 342
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q +EA+ FN+M G+ P+G++FI LLHAC H G ++EG +F M Y I P+IEHY
Sbjct: 343 QGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHY 402
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDL R+G LQ+AY+FI MPI P +VW LLG C H NI+LAE+ ++L++LDP
Sbjct: 403 GCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDP 462
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH- 239
N+G V+LSN YA A +W+DVA +RK M +KKT WS + V +++F AG++
Sbjct: 463 NNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKG 522
Query: 240 ---PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMN 296
EK+ ++ +L D GY P + L D+EE+EKE + +HSEKLAL F L
Sbjct: 523 IDIEAHEKLKEIILRLKDE---AGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALAR 579
Query: 297 TPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G IRI+KNLR+C DCHA KL S++ EI+VRDRNRFH F+ GSCSC DYW
Sbjct: 580 LSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 635
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 4/166 (2%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN N ++ Y+K G LE A+R+F EM R +WS MI G+A +G E+ F ++
Sbjct: 193 RNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFREL 252
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
G+ PN V+ G+L AC G + G + + + G + ++D+ SR G
Sbjct: 253 QRAGMSPNEVSLTGVLSACSQSGSFEFG-KILHGFVEKAGYSWIVSVNNALIDMYSRCGN 311
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ A M K V W +++ G +H EEA R +++
Sbjct: 312 VPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQ---GEEAVRLFNEM 354
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 12/162 (7%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G ++ V TLI MY CGC+E AR+VF EM + + W+A+I
Sbjct: 119 QMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGN 178
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A F+KM+ V G + A G ++ +R F M + +
Sbjct: 179 DVAGAREIFDKMLVRNHTSWNVMLAGYIKA----GELESAKRIFSEMPHRDDV-----SW 229
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGC 159
M+ ++ G E++ + R + + PN V +L C
Sbjct: 230 STMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSAC 271
>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 643
Score = 337 bits (864), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 172/356 (48%), Positives = 234/356 (65%), Gaps = 8/356 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE-RTVFTWSAMIQGLAIHG 60
+H + ++G+ + V N LIDMY +CG + AR VF M+E R + +W++MI GLA+HG
Sbjct: 291 LHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHG 350
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q +EA+ FN+M G+ P+G++FI LLHAC H G ++EG +F M Y I P+IEHY
Sbjct: 351 QGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHY 410
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDL R+G LQ+AY+FI MPI P +VW LLG C H NI+LAE+ ++L++LDP
Sbjct: 411 GCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDP 470
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH- 239
N+G V+LSN YA A +W+DVA +RK M +KKT WS + V +++F AG++
Sbjct: 471 NNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKG 530
Query: 240 ---PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMN 296
EK+ ++ +L D GY P + L D+EE+EKE + +HSEKLAL F L
Sbjct: 531 IDIEAHEKLKEIILRLKDE---AGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALAR 587
Query: 297 TPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G IRI+KNLR+C DCHA KL S++ EI+VRDRNRFH F+ GSCSC DYW
Sbjct: 588 LSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 4/166 (2%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN N ++ Y+K G LE A+R+F EM R +WS MI G+A +G E+ F ++
Sbjct: 201 RNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFREL 260
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
G+ PN V+ G+L AC G + G + + + G + ++D+ SR G
Sbjct: 261 QRAGMSPNEVSLTGVLSACSQSGSFEFG-KILHGFVEKAGYSWIVSVNNALIDMYSRCGN 319
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ A M K V W +++ G +H EEA R +++
Sbjct: 320 VPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQ---GEEAVRLFNEM 362
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 12/162 (7%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G ++ V TLI MY CGC+E AR+VF EM + + W+A+I
Sbjct: 127 QMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGN 186
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A F+KM+ V G + A G ++ +R F M + +
Sbjct: 187 DVAGAREIFDKMLVRNHTSWNVMLAGYIKA----GELESAKRIFSEMPHRDDV-----SW 237
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGC 159
M+ ++ G E++ + R + + PN V +L C
Sbjct: 238 STMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSAC 279
>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 337 bits (864), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 159/351 (45%), Positives = 228/351 (64%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +S +SGF+ ++ V N LI+MY K G +E A++VF +M R + TW+AMI G + HG
Sbjct: 357 LHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMMHRDIITWNAMICGFSHHGL 416
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K+AL F M+ PN VTF G+L ACGH+G V EG + + + ++G+ P +EHY
Sbjct: 417 GKKALLVFQDMLAAEEHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYT 476
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+V LLS+ G L EA F+R P+K + V W LL C VH+N L + + ++DP
Sbjct: 477 CIVSLLSKTGQLNEARNFMRTAPVKWDVVAWRTLLNACHVHQNYGLGRWVAEFVLEMDPN 536
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G + +LSNIYA+ +RW+ V +VRKLMR+ +KK PG S I + V H F + D HP
Sbjct: 537 DVGTYTLLSNIYAKEKRWDGVVKVRKLMRDKKIKKEPGVSWIEIGNVTHIFTSEDNKHPD 596
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ +Q ++LL +K GY P+ VL D+E+++KE +L HSEKLA+ +GL+ P
Sbjct: 597 YGQTYQKVKELLAMIKPLGYTPDIGAVLHDVEDEQKEYYLSYHSEKLAIAYGLLKLPSEA 656
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I ++KNLR+C+DCH+A +LIS++ NR IVVRD NRFH F+ G CSC DYW
Sbjct: 657 SILVIKNLRICDDCHSAVRLISKVTNRVIVVRDANRFHHFRDGRCSCLDYW 707
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 74/146 (50%), Gaps = 2/146 (1%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V + +I+MY KCG AR VF ++ R V W+A++ +G +EAL F+KM +
Sbjct: 271 VSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQEN 330
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
+K N T+ LL+AC + G + + + G + ++++ +++G ++ A
Sbjct: 331 VKSNEFTYAVLLNACAGLSARRNG-SLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAA 389
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVH 162
+ +M + + + W A++ G H
Sbjct: 390 KKVFSDM-MHRDIITWNAMICGFSHH 414
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 2/128 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG-I 77
N+LI+ Y K + A +F M ER V +WSA++ G ++G + + + MI G +
Sbjct: 70 NSLINFYAKVNQVSIAHNLFDRMPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNV 129
Query: 78 KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAY 137
PN + +C G V+EGR+ + + + G +V + S+ +Q+A
Sbjct: 130 SPNEYILAIAISSCCDRGRVEEGRQ-CHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAM 188
Query: 138 EFIRNMPI 145
+P+
Sbjct: 189 GVWNEVPV 196
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 20/161 (12%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
++GF + V N L+ MY KC ++ A V+ E+ + +++++ L +G +E L
Sbjct: 161 KTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENGYLREGLE 220
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE------YGIIPQIEHYG 121
M+ +K + VTF+ C + + G M T Y I YG
Sbjct: 221 VLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAIINMYG 280
Query: 122 -CMVDLLSRAGF--LQEAYEFIRNMPIKPNGVVWGALLGGC 159
C L++R F LQ N V+W A++ C
Sbjct: 281 KCGKSLMARGVFDGLQSR-----------NVVLWTAVMASC 310
>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 597
Score = 337 bits (864), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 159/333 (47%), Positives = 226/333 (67%), Gaps = 2/333 (0%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
NI V N +DM++KCG E AR +F +M++R V +WS MI G A++G + EAL F M
Sbjct: 244 NIIVENARLDMHLKCGSTEAARVLFDDMKQRNVVSWSTMIVGYAMNGDSGEALALFTMMQ 303
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMT--TEYGIIPQIEHYGCMVDLLSRAG 131
G++PN VTF+G+L AC H G V+EG+R+F M + + P+ EHY CMVDLL R+G
Sbjct: 304 NEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVRLNDKNLEPRKEHYACMVDLLGRSG 363
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSN 191
L+EAYEFI+ M ++P+ +WGALLG C VH+++ L ++ + L + P YHV+LSN
Sbjct: 364 LLEEAYEFIKKMRVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSN 423
Query: 192 IYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEK 251
IYA A +W+ V +VR MR LG KK +SS+ DG +H F GD +HPQ++ I++ ++
Sbjct: 424 IYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFDGKIHFFNRGDISHPQSKAIYEKLDE 483
Query: 252 LLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRV 311
+L ++ GY+P+T V D+E +EKE L HSEKLA+ FGL+N G PIR+MKNLR
Sbjct: 484 ILKKIRNMGYVPDTGSVFHDVEMEEKESSLSHHSEKLAIAFGLINGRAGHPIRVMKNLRT 543
Query: 312 CEDCHAAFKLISEIVNREIVVRDRNRFHCFQAG 344
C+DCH K +S + +REI++RD+NRFH F+ G
Sbjct: 544 CDDCHVFSKFVSRLTSREIIMRDKNRFHHFRNG 576
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + ++GF V L+ MY+K G L A +F M+ + + W+A I G
Sbjct: 131 LHAHVLKNGFECLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFIAVCVQTGN 190
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ AL FNKM ++ + T + +L ACG +G +D G Y + I I
Sbjct: 191 SAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLDIGEE-IYDRARKEEIECNIIVEN 249
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+D+ + G + A +M + N V W ++ G
Sbjct: 250 ARLDMHLKCGSTEAARVLFDDMK-QRNVVSWSTMIVG 285
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 10/174 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++GF + L++ V G + AR+VF EM + +F W+ + +G +
Sbjct: 29 KIHAVVIRTGFSEKNSLLTQLLENLVLVGDMCYARQVFDEMPKPRIFLWNTLFKGYVRNQ 88
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE----YGIIPQ 116
E++ + KM ++G++P+ T+ ++ A +G + G + GI+
Sbjct: 89 LPFESVLLYKKMRDLGVRPDEFTYPFVVKAISQLGVLPCGVSLHAHVLKNGFECLGIVAT 148
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
+V + + G L A +M +K + V W A + C N +A E
Sbjct: 149 E-----LVMMYMKFGELSSAEFLFESMQVK-DLVAWNAFIAVCVQTGNSAIALE 196
>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Glycine max]
Length = 722
Score = 337 bits (864), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 169/356 (47%), Positives = 225/356 (63%), Gaps = 4/356 (1%)
Query: 1 RVHEYSNQSGFRRN-IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
+VH + +S N + V N L+ MY KCG + ARRVF M E + ++MI G A H
Sbjct: 367 QVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQH 426
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G E+L F M+E I PN +TFI +L AC H G V+EG+++F M + I P+ EH
Sbjct: 427 GVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEH 486
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CM+DLL RAG L+EA I MP P + W LLG CR H N++LA +A+ + +L+
Sbjct: 487 YSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLE 546
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N +V+LSN+YA A RWE+ A V++LMR GVKK PG S I +D VH FVA D +H
Sbjct: 547 PYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSH 606
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLL---DIEEKEKEKFLYRHSEKLALTFGLMN 296
P ++I K+L MK GY+P+ L+ ++E E+E+ L HSEKLA+ FGL++
Sbjct: 607 PMIKEIHVYMGKMLKKMKQAGYVPDIRWALVKDEEVEPDERERRLLYHSEKLAVAFGLIS 666
Query: 297 TPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T G PI ++KNLR+C DCH A KLIS + REI VRD +RFHCF+ G CSC DYW
Sbjct: 667 TEEGVPILVVKNLRICGDCHNAVKLISALTGREITVRDTHRFHCFKEGHCSCRDYW 722
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
Query: 8 QSGFRRNIRVCNTLIDMYVKC-GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ-AKEA 65
+SGF N V + LID+Y KC G + R+VF E+ + W+ MI G +++ +++
Sbjct: 271 KSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGFSLYEDLSEDG 330
Query: 66 LTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125
L F +M G +P+ +F+ + AC ++ G++ ++ +V
Sbjct: 331 LWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNALVA 390
Query: 126 LLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ S+ G + +A MP + N V +++ G H
Sbjct: 391 MYSKCGNVHDARRVFDTMP-EHNTVSLNSMIAGYAQH 426
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 7/153 (4%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N+ NTLI+ Y K + ARRVF E+ + + +++ +I A G+ L F ++
Sbjct: 74 NVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVR 133
Query: 74 EIGIKPNGVTFIGLLHACG-HMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E+ + +G T G++ ACG +G V R + G ++ SR GF
Sbjct: 134 ELRLGLDGFTLSGVITACGDDVGLV----RQLHCFVVVCGHDCYASVNNAVLACYSRKGF 189
Query: 133 LQEAYEFIRNMPIKP--NGVVWGALLGGCRVHK 163
L EA R M + V W A++ C H+
Sbjct: 190 LSEARRVFREMGEGGGRDEVSWNAMIVACGQHR 222
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 8/158 (5%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
V N ++ Y + G L ARRVF EM E R +W+AMI H + EA+ F +M+
Sbjct: 176 VNNAVLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMV 235
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR-AGF 132
G+K + T +L A + + GR+ F+ M + G ++DL S+ AG
Sbjct: 236 RRGLKVDMFTMASVLTAFTCVKDLVGGRQ-FHGMMIKSGFHGNSHVGSGLIDLYSKCAGS 294
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
+ E + + P+ V+W ++ G +++ DL+E+
Sbjct: 295 MVECRKVFEEI-TAPDLVLWNTMISGFSLYE--DLSED 329
>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
Length = 630
Score = 337 bits (863), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 158/352 (44%), Positives = 223/352 (63%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + GF RN+ V +L+D+Y KCG +E + VF +MEE+ V W+AMI + H
Sbjct: 279 QVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHA 338
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EA+ F KM ++GI PN VT++ +L AC H G V+EGR +F + ++ P + HY
Sbjct: 339 HSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHY 398
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVD+L R+G EA++ + MP +P +WG+LLG R+HKNI LA A+ QL +L+P
Sbjct: 399 SCMVDVLGRSGKTDEAWKLLDKMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEP 458
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G HV+LSN+YA + WE+V RK +R+ G KK G S I G +H FVAG+ HP
Sbjct: 459 ENGGNHVLLSNVYAASGNWENVVVARKYLRDSGAKKEMGRSWIEAKGKIHVFVAGEREHP 518
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++ E++ M+ + NT L D+ +KE+ L HSEKLA FGL++ PP
Sbjct: 519 GITDVYNKLEEIYHEMRKISHRANTQCDLHDVHADQKEELLKHHSEKLAFAFGLISLPPN 578
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PI I KNLR+C DCH+ K++S I R+++VRD NRFH F+ GSCSCGD+W
Sbjct: 579 IPITIYKNLRICGDCHSFMKIVSCITERQVIVRDINRFHHFKDGSCSCGDFW 630
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 2/149 (1%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G + CN LI++Y KCG + ARRVF M R++ +W+ MI G + + EAL F
Sbjct: 86 GLVTDTVTCNILINLYTKCGQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLF 145
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
++M G + T L AC + E ++ +++ + + +D+ ++
Sbjct: 146 SRMHREGTQMTEFTLSSTLCACAAKYAIIECKQ-LHTIAIKLALDSSSFVGTAFLDVYAK 204
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+++A NMP K + V W +L G
Sbjct: 205 CNMIKDACWVFENMPEKTS-VTWSSLFAG 232
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 2/148 (1%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V +D+Y KC ++ A VF M E+T TWS++ G +G +E L F G
Sbjct: 194 VGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREG 253
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
++ T +L C + + EG + +++ ++G + +VD+ ++ G ++++
Sbjct: 254 MQLTEFTVSSILSTCASLALIIEGTQ-VHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKS 312
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKN 164
YE +M K N V+W A++ H +
Sbjct: 313 YEVFADMEEK-NVVLWNAMIASFSRHAH 339
>gi|218185168|gb|EEC67595.1| hypothetical protein OsI_34962 [Oryza sativa Indica Group]
Length = 838
Score = 337 bits (863), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 155/351 (44%), Positives = 231/351 (65%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H Y+ + N V L++MY CG L+ A +VF +R ++AM+ GLA+HG
Sbjct: 488 AHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGH 547
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ AL+ F++M G+ +GVT + ++ AC H G VDEG +F M E+GI P IEHYG
Sbjct: 548 GRAALSLFDRMHGEGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYG 607
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+LSRAG L +A + I MPI PN ++ +L+ C +H ++L ++ +L +L+P
Sbjct: 608 CMVDMLSRAGRLNDAEKLIHGMPIVPNAAIYRSLIRACGIHGKLELGKKMIAELMRLEPD 667
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G HV++SN YA RW+D + RK M+++G+ K+PG S + ++GV+HEF+ GD+THP
Sbjct: 668 DSGNHVLISNFYATTNRWDDAKKARKEMKSMGIDKSPGSSFVDINGVLHEFLVGDKTHPA 727
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I+ M E + + G+ +TS L D+EE++K L HSE+LA+ F L+ + PG
Sbjct: 728 SKEIYAMVEDIETRLSECGHRSSTSSALFDVEEEDKADALSYHSERLAIAFALIASNPGA 787
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVC DCH + KL+S + REIV+RDR RFH F+ G CSCGD+W
Sbjct: 788 PIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW 838
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 20 TLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLA---------IHGQAKEALTSFN 70
L+D++ +CG + R+VF + + W+A++ A A L F
Sbjct: 396 ALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACASSAADAILEMFV 455
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEG 100
+M+ + IKPN +T + ++ ACG +G V G
Sbjct: 456 RMLSLAIKPNEITLVAVIGACGELGAVSHG 485
>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 564
Score = 337 bits (863), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 155/351 (44%), Positives = 230/351 (65%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + ++ + L+DMY KCGC+E A++VF+ M + WS+MI G A HG
Sbjct: 215 LHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGL 274
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A++A+ +F +M+E + P+ VTF+ +L AC H G V GRRF +S+ E+GI P +EHYG
Sbjct: 275 AQDAIDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRGRRF-WSLMLEFGIEPSVEHYG 333
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C VDLL R+G ++EAY M I PN W +LL GC+ K ++L E +R L +L+PL
Sbjct: 334 CKVDLLCRSGLVEEAYRITTTMKIPPNAATWRSLLMGCKKKKLLNLGEIVARYLLELEPL 393
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N ++++SN+Y+ +WE ++ +RK+M+ +K PG SSI VDGVVHEFV GD++HP+
Sbjct: 394 NAENYIMISNLYSSLSQWEKMSELRKVMKEKCIKPVPGCSSIEVDGVVHEFVMGDQSHPE 453
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ + + E++ ++ GY P+ S VL + ++EKE L HSE+ A+ +GL+ T
Sbjct: 454 VKMLREFMEEMSMRVRDSGYRPSISDVLHKVVDEEKECALSEHSERFAIAYGLLKTRAPI 513
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR++KNLRVC DCH K+IS++ REI+VRDR RFH F G+CSC D+W
Sbjct: 514 VIRVVKNLRVCVDCHEVIKIISKLYEREIIVRDRVRFHKFIKGTCSCKDFW 564
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 140/295 (47%), Gaps = 22/295 (7%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + GF ++ V +L++ Y KC + AR+VF EM R + W+AMI G A G
Sbjct: 113 QVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVG 172
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA+ F +M + GI+P+ +T + ++ AC G +D G + ++ +Y ++ +E
Sbjct: 173 AVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIG-YWLHAYIEKYFVLTDLELS 231
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+VD+ ++ G ++ A + +MP+K + W +++ G H A +A +Q+ + +
Sbjct: 232 TALVDMYAKCGCIERAKQVFVHMPVK-DTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEV 290
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRK---LMRNLGVKKTPGWSSITVD-----GVVHE- 231
+ HV + + V+R R+ LM G++ + VD G+V E
Sbjct: 291 TPD--HVTFLAVLSACAHGGLVSRGRRFWSLMLEFGIEPSVEHYGCKVDLLCRSGLVEEA 348
Query: 232 --FVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVV---LLDIEEKEKEKFL 281
+ P A W LL G K K + +V LL++E E ++
Sbjct: 349 YRITTTMKIPPNAAT----WRSLLMGCKKKKLLNLGEIVARYLLELEPLNAENYI 399
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 39/238 (16%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLA-IHGQAKEALTSFNKMIEIGIK-PNGVTFIG 86
G + AR VF ++ +F+W+++I+G + IH +KE + F K+ E G PN T
Sbjct: 38 GNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAF 97
Query: 87 LLHACGHMGWVDEGRRF---------------------FYSMTTEYGI---------IPQ 116
+L AC + EG + FY E G +
Sbjct: 98 VLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRN 157
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGCRVHKNIDLAEEASR 173
+ + M+ +R G + EA E R M I+P+ + +++ C V +D+
Sbjct: 158 LVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHA 217
Query: 174 QLDQLDPLNN-GYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVH 230
+++ L + L ++YA+ E R +++ ++ VK T WSS+ + H
Sbjct: 218 YIEKYFVLTDLELSTALVDMYAKCGCIE---RAKQVFVHMPVKDTTAWSSMIMGFAYH 272
>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
[Vitis vinifera]
Length = 603
Score = 337 bits (863), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 163/356 (45%), Positives = 229/356 (64%), Gaps = 4/356 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ + NI V N LIDMY KCG L A +F M +R VFTW++MI G +HG
Sbjct: 248 QMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHG 307
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EA+T F M+ G++PN +TF+GLL C H G V EG ++F+ M++E+ + P I+HY
Sbjct: 308 RGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHY 367
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDL RAG L+EA E IR+ P + + V+W LLG C++H+N+++ E A R L QL
Sbjct: 368 GCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGS 427
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
L G V+LS IYAEA+ + VAR+RKL+++ G+K TPGWS I V VH FV D++HP
Sbjct: 428 LGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHP 487
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEK----EKFLYRHSEKLALTFGLMN 296
+ +I++ E+++ L GY S ++ E + E HSEKLA+ +GL
Sbjct: 488 DSREIYRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLAR 547
Query: 297 TPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TP GT + I+KNLRVC DCH K +S +REI+VRDR RFH F+ G CSC ++W
Sbjct: 548 TPEGTSLLIVKNLRVCRDCHNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 603
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 83/167 (49%), Gaps = 2/167 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + G+ +++ +C LI Y G +E A +VF EM R + +W++MI G
Sbjct: 148 VHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGL 207
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL +++M + +G T + LL +C H+G + G + + E ++ I
Sbjct: 208 HEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQ-MHRFAGERRLVENIFVGN 266
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++D+ ++ G L A +MP K + W +++ G VH D A
Sbjct: 267 ALIDMYAKCGSLASALSIFNSMP-KRDVFTWNSMIVGYGVHGRGDEA 312
>gi|242095216|ref|XP_002438098.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
gi|241916321|gb|EER89465.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
Length = 596
Score = 337 bits (863), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 167/353 (47%), Positives = 235/353 (66%), Gaps = 7/353 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIH 59
H+++ G N+RVCN LIDMY KCG L A VF I++E+RT+ +++A IQ L++H
Sbjct: 249 AHDFARTIGAVGNVRVCNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSMH 308
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G ++AL F++M I+P+ VT++ +L C H G VD+GRR F SM + P ++H
Sbjct: 309 GHGEDALKLFDEM-PARIEPDEVTYLAVLGGCNHAGLVDDGRRVFDSMR----VPPNMKH 363
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YG +VDLL RAG L EA++ I +MP + V+W LLG ++H N+DLAE A+ +L L
Sbjct: 364 YGTIVDLLGRAGRLAEAHDMIMHMPFPADIVLWQTLLGAAKMHGNVDLAELAATKLADLG 423
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
+G +V+LSN+YA RW DV RVR MR+ VKK PG+S +DGV+H+F+ GD+ H
Sbjct: 424 SNVDGDYVLLSNVYASKSRWVDVGRVRDTMRSNDVKKVPGFSYTEIDGVMHKFINGDKEH 483
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
+ +I++ +++ + GY P TS VL DI E+EK+ L HSEKLA+ FGL++TPP
Sbjct: 484 LRWREIYRALDEIGSKICELGYEPETSNVLHDIGEEEKQYALSYHSEKLAIAFGLISTPP 543
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G IR++KNLR+C DCH KLIS+ R I++RDR RFH F+ G CSC DYW
Sbjct: 544 GETIRVIKNLRICGDCHVVAKLISKAYGRVIIIRDRARFHQFEDGQCSCRDYW 596
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 123/282 (43%), Gaps = 33/282 (11%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G ++R+ TL+D Y KCG L ARRVF EM R V TW+A++ GLA
Sbjct: 141 QLHAILVRLGVAADVRLMTTLLDSYAKCGDLASARRVFDEMSVRDVATWNALLAGLAQGT 200
Query: 61 QAKEALTSFNKM------IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGII 114
+ AL F ++ + +PN VT + L AC +G + +G + G +
Sbjct: 201 EPNLALVLFRRLAGSFRELPPREEPNEVTVVAALSACAQLGALKDGLA-AHDFARTIGAV 259
Query: 115 PQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV-WGALLGGCRVHKNIDLAEEASR 173
+ ++D+ S+ G L A E ++ ++ +V + A + +H + E+A +
Sbjct: 260 GNVRVCNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSMHGH---GEDALK 316
Query: 174 QLDQL----DPLNNGYHVVL-----SNIYAEAERWEDVARVRKLMRNLG----VKKTPGW 220
D++ +P Y VL + + + R D RV M++ G + G
Sbjct: 317 LFDEMPARIEPDEVTYLAVLGGCNHAGLVDDGRRVFDSMRVPPNMKHYGTIVDLLGRAGR 376
Query: 221 SSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYI 262
+ D ++H D +W+ LL K+ G +
Sbjct: 377 LAEAHDMIMHMPFPAD---------IVLWQTLLGAAKMHGNV 409
>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
Length = 630
Score = 336 bits (862), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 162/342 (47%), Positives = 224/342 (65%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
+ +++ + N L+DMY KCG LE A RVF +M+ER V TWS MI GLA +G ++EAL F
Sbjct: 289 YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFE 348
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
+M G KPN +T +G+L AC H G +++G +F SM YGI P EHYGCM+DLL +A
Sbjct: 349 RMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKA 408
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190
G L +A + + M +P+ V W LLG CRV +N+ LAE A++++ LDP + G + +LS
Sbjct: 409 GKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLS 468
Query: 191 NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWE 250
NIYA +++W+ V +R MR+ G+KK PG S I V+ +H F+ GD +HPQ ++ +
Sbjct: 469 NIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLN 528
Query: 251 KLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLR 310
+L+ + GY+P T+ VL D+E ++ E L HSEKLAL FGLM P IRI KNLR
Sbjct: 529 QLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLR 588
Query: 311 VCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+C DCH KL S++ R IV+R R+H FQ G CSCGDYW
Sbjct: 589 ICGDCHVFCKLASKLEIRSIVIRGPIRYHHFQDGKCSCGDYW 630
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 13/178 (7%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLA---IH 59
H Y N G R + + N LI+MYVK L A ++F +M +R V +W+ MI + IH
Sbjct: 86 HLYFN--GHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIH 143
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+A E L M+ ++PN T+ +L +C M V R + + G+ +
Sbjct: 144 QKALELLV---LMLRDNVRPNVYTYSSVLRSCNGMSDV----RMLHCGIIKEGLESDVFV 196
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
++D+ ++ G ++A M + + +VW +++GG + D+A E +++ +
Sbjct: 197 RSALIDVFAKLGEPEDALSVFDEM-VTGDAIVWNSIIGGFAQNSRSDVALELFKRMKR 253
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 10/154 (6%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
+ G ++ V + LID++ K G E A VF EM W+++I G A + ++ AL
Sbjct: 187 KEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALE 246
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY---GCMV 124
F +M G T +L AC + ++ G M I+ + +V
Sbjct: 247 LFKRMKRAGFIAEQATLTSVLRACTGLALLELG------MQAHVHIVKYDQDLILNNALV 300
Query: 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
D+ + G L++A M + + + W ++ G
Sbjct: 301 DMYCKCGSLEDALRVFNQMK-ERDVITWSTMISG 333
>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 336 bits (862), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 163/356 (45%), Positives = 229/356 (64%), Gaps = 4/356 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ + NI V N LIDMY KCG L A +F M +R VFTW++MI G +HG
Sbjct: 230 QMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHG 289
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EA+T F M+ G++PN +TF+GLL C H G V EG ++F+ M++E+ + P I+HY
Sbjct: 290 RGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHY 349
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDL RAG L+EA E IR+ P + + V+W LLG C++H+N+++ E A R L QL
Sbjct: 350 GCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGS 409
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
L G V+LS IYAEA+ + VAR+RKL+++ G+K TPGWS I V VH FV D++HP
Sbjct: 410 LGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHP 469
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEK----EKFLYRHSEKLALTFGLMN 296
+ +I++ E+++ L GY S ++ E + E HSEKLA+ +GL
Sbjct: 470 DSREIYRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLAR 529
Query: 297 TPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TP GT + I+KNLRVC DCH K +S +REI+VRDR RFH F+ G CSC ++W
Sbjct: 530 TPEGTSLLIVKNLRVCRDCHNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 585
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 83/167 (49%), Gaps = 2/167 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + G+ +++ +C LI Y G +E A +VF EM R + +W++MI G
Sbjct: 130 VHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGL 189
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL +++M + +G T + LL +C H+G + G + + E ++ I
Sbjct: 190 HEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQ-MHRFAGERRLVENIFVGN 248
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++D+ ++ G L A +MP K + W +++ G VH D A
Sbjct: 249 ALIDMYAKCGSLASALSIFNSMP-KRDVFTWNSMIVGYGVHGRGDEA 294
>gi|326532850|dbj|BAJ89270.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 336 bits (862), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 163/353 (46%), Positives = 234/353 (66%), Gaps = 7/353 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIH 59
VHE++ + G N+RVCN LIDMY KCG L A VF I+ E+RT+ +++ IQ +++H
Sbjct: 233 VHEFARKIGVGGNVRVCNALIDMYSKCGSLARALEVFHSIKREDRTLVSYNTAIQAISMH 292
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G +AL F++M I+P+ VT+I +L C H G VDEG R F+ M + P ++H
Sbjct: 293 GHGGDALKLFDEM-PTCIEPDEVTYIAVLCGCNHAGLVDEGLRVFHGMR----VPPNVKH 347
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YG +VDLL RAG L EAY+ I++MP + V+W LLG + H +++LAE A+ +L +L
Sbjct: 348 YGTVVDLLGRAGRLAEAYDTIKSMPFPADIVLWQTLLGASKTHGDVELAEVAATKLTELG 407
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
+G +V+LSN+YA RW DV RVR MR+ V+K PG+S + GV+H+F+ GD+ H
Sbjct: 408 SNVDGDYVLLSNVYASKARWADVGRVRDTMRSNDVRKVPGFSYTEISGVMHKFINGDKEH 467
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ ++I++ +++ + GY P TS VL DI E+EK+ L HSEKLA+ FGL+ TPP
Sbjct: 468 PRLQEIYRALGEIMSRIGELGYEPETSNVLHDIGEEEKQYALSYHSEKLAIAFGLIATPP 527
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G +R++KN+R+C DCH KLIS+ R I++RDR RFH F+ G CSC DYW
Sbjct: 528 GETLRVIKNIRICGDCHVVAKLISKAYGRAIIIRDRARFHRFEDGQCSCSDYW 580
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 7/149 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G ++R+ TL+D Y KC L AR+VF EM R V +W+A++ GLA
Sbjct: 125 QLHALVLRLGCTADVRLITTLLDSYAKCDELASARKVFDEMTVRDVASWNALLAGLAQGT 184
Query: 61 QAKEALTSFNKMI----EIGIK--PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGII 114
+ AL F++++ E+ + PN VT I L AC +G + +G + + G+
Sbjct: 185 EPSLALALFHRLVRSFQELPPREAPNVVTIIAALSACAQIGSLQDG-LCVHEFARKIGVG 243
Query: 115 PQIEHYGCMVDLLSRAGFLQEAYEFIRNM 143
+ ++D+ S+ G L A E ++
Sbjct: 244 GNVRVCNALIDMYSKCGSLARALEVFHSI 272
>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Brachypodium distachyon]
Length = 654
Score = 336 bits (862), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 229/352 (65%), Gaps = 2/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM-EERTVFTWSAMIQGLAIHG 60
+H Y + GF + V N L+ MY++CGCLE R +F + R V +W+++I G +HG
Sbjct: 304 LHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHIFKWIGHRRDVVSWNSLISGYGMHG 363
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA+ F +MI +G P+ +TFI +L AC H G V+EG+ F SM EYG+ P+ EHY
Sbjct: 364 FGPEAVQVFEEMIHVGFSPSIITFISVLGACSHAGLVNEGKMLFESMV-EYGVTPRAEHY 422
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG L EA E IR+M I+P+ VWGALLG CR+H +++ AE A L L+P
Sbjct: 423 ACMVDLLGRAGQLDEAMELIRSMHIEPSPQVWGALLGACRIHGHVEYAEIACSHLFDLEP 482
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +V+L++IYA A+ V +++L+ ++K G S I V +H F + D +P
Sbjct: 483 RNAGNYVLLADIYARAKLHNQVGVLKELLEEHALEKVTGCSWIEVKKKLHSFTSVDNKNP 542
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
E++ + + + MK +GY+P+T +VL DIE +EKE+ L HSEKLA+ FGL+NT G
Sbjct: 543 PVEQLQALIGEFVAQMKNQGYVPDTGIVLYDIEGEEKERILIGHSEKLAVAFGLINTCSG 602
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI KNLR+CEDCH+ K IS+ REIVVRD NRFH F+ G CSCGDYW
Sbjct: 603 EVIRITKNLRLCEDCHSVTKFISKFTEREIVVRDVNRFHHFRDGVCSCGDYW 654
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 3/163 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++ + G+ + V TLID Y K G + A VF M ER V +WSAMI A + +
Sbjct: 201 VHAHAIRRGYALHTHVATTLIDCYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNER 260
Query: 62 AKEALTSFNKMI--EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+A+ F M+ + + PN +T + +L+AC + + G + ++ G +
Sbjct: 261 PADAIELFKDMMASDADLVPNSITIVSVLNACAGVNALSHG-KLLHAYILRRGFDSLVSV 319
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++ + R G L+ + + + + V W +L+ G +H
Sbjct: 320 LNALMAMYMRCGCLEVGRHIFKWIGHRRDVVSWNSLISGYGMH 362
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 5/151 (3%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
FR + + LI+ Y G L AR+VF E + +F W+A+++ LA+ EAL
Sbjct: 104 FRSDPFLSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALADHGDEALARLA 163
Query: 71 KMIEIGIKPNGVTFIGLLHAC----GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126
M +G+ + ++ L AC R ++ G ++D
Sbjct: 164 DMGRLGVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVATTLIDC 223
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
++ G ++ A MP + N V W A++G
Sbjct: 224 YAKLGIVRYAESVFAAMPER-NVVSWSAMIG 253
>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 919
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 226/352 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++G V N LI +Y KCG +E A+ F EM ER +W+ +I + HG
Sbjct: 568 QIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHG 627
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL F++M + G+KPN VTFIG+L AC H+G V+EG +F SM++E+GI P+ +HY
Sbjct: 628 WGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHY 687
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VD+L RAG L A +F+ MP+ N +VW LL CRVHKNI++ E A++ L +L+P
Sbjct: 688 ACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEP 747
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+LSN YA +W VRK+M++ GV+K PG S I V VVH F GD HP
Sbjct: 748 HDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHP 807
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
A +I++ L D + GYI + + E+++K+ + HSEKLA+ FGLM+ PP
Sbjct: 808 LAHQIYKYLADLDDRLAKIGYIQGNYFLFHEKEKEQKDPTAFVHSEKLAVAFGLMSLPPS 867
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P+R++KNLRVC DCH K SE++ REIV+RD RFH F G+CSCGD+W
Sbjct: 868 MPLRVIKNLRVCNDCHTWMKFTSEVMGREIVLRDVYRFHHFNNGNCSCGDFW 919
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 81/158 (51%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S ++GF ++ V LIDMY K G L+ ARR+ +E + V +W++MI G H
Sbjct: 366 QIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHE 425
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
KEAL +F M GI P+ + + AC + + +G++ +S G + +
Sbjct: 426 FCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQ-IHSRVYVSGYSADVSIW 484
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V+L +R G +EA+ + K + + W ++ G
Sbjct: 485 NALVNLYARCGRSKEAFSLFEAIEHK-DKITWNGMVSG 521
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 81/162 (50%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H SG+ ++ + N L+++Y +CG + A +F +E + TW+ M+ G A G
Sbjct: 467 QIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSG 526
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F KM + G+K N TF+ + A ++ + +G++ ++ + G + E
Sbjct: 527 LYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQ-IHATVIKTGCTSETEVA 585
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++ L + G +++A M + N V W ++ C H
Sbjct: 586 NALISLYGKCGSIEDAKMQFFEMS-ERNHVSWNTIITSCSQH 626
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 116/288 (40%), Gaps = 49/288 (17%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + G V N LI +Y++ G L A RVF EM T++ +I A G
Sbjct: 165 VHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGN 224
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ AL F +M G P+ VT LL AC +G +++G++ +S + G+ P G
Sbjct: 225 GESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQ-LHSYLLKAGMSPDYIIEG 283
Query: 122 CMVDLLSRAGFLQEAYEFIRN----------------------------------MPIKP 147
++DL + G + EA E ++ ++P
Sbjct: 284 SLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRP 343
Query: 148 NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV------VLSNIYAEAERWED 201
N + LL C I+L E+ L + G+ VL ++Y++ W D
Sbjct: 344 NEFTYPCLLRTCTYAGEINLGEQI-----HLLSIKTGFESDMYVSGVLIDMYSKYG-WLD 397
Query: 202 VARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
+ R+++ L K W+S+ V HEF + ++F +W
Sbjct: 398 --KARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIW 443
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 96/195 (49%), Gaps = 10/195 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y ++G + + +L+D+YVKCG + A +F + V W+ M L +G
Sbjct: 265 QLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLM---LVAYG 321
Query: 61 QAKEALTSFN---KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
Q + SF+ +M+ G++PN T+ LL C + G ++ G + + ++ + G +
Sbjct: 322 QISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQ-IHLLSIKTGFESDM 380
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR--QL 175
G ++D+ S+ G+L +A + + K + V W +++ G H+ A E + QL
Sbjct: 381 YVSGVLIDMYSKYGWLDKARRILEVLEAK-DVVSWTSMIAGYVQHEFCKEALETFKDMQL 439
Query: 176 DQLDPLNNGYHVVLS 190
+ P N G +S
Sbjct: 440 FGIWPDNIGLASAIS 454
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 1/143 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G + N LID+Y K G ++ ARRVF ++ R +W AM+ G A +G
Sbjct: 64 IHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGL 123
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA+ +++M G+ P +L AC ++G R ++ + G +
Sbjct: 124 GEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQG-RLVHAQVYKQGSCSETVVGN 182
Query: 122 CMVDLLSRAGFLQEAYEFIRNMP 144
++ L R G L A MP
Sbjct: 183 ALIALYLRFGSLSLAERVFSEMP 205
>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
Length = 637
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 163/354 (46%), Positives = 232/354 (65%), Gaps = 2/354 (0%)
Query: 1 RVHEYSN--QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAI 58
R+HE + G ++ V L++MY KCG L A +F ++ + W+++I A
Sbjct: 284 RIHERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQ 343
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
HGQ ++AL F +M G++P +TF +L AC H G +D+GR+ F S ++GI P+ E
Sbjct: 344 HGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAE 403
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
H+GCMVDLL RAG++ ++ + + +MP +P+ V W A LG CR ++N+D A A+ L QL
Sbjct: 404 HFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQL 463
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
DP +V+LSN+YA+A RW DVAR+R+ M+ K G S I V VHEF++GD
Sbjct: 464 DPRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLD 523
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
HP+ +I ++L MK GY+P+T +VL D++++ KE + HSEKLA+ F L+ TP
Sbjct: 524 HPRIGEIHAELQRLTKLMKEAGYVPDTEMVLHDVKQEVKEIMVGYHSEKLAMAFALLTTP 583
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G+PIR++KNLRVC DCH A K IS++VNREIVVRD NRFH FQ G+CSCGDYW
Sbjct: 584 EGSPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 637
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 112/282 (39%), Gaps = 32/282 (11%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
+G V L+ MY K G A VF+ M R V WSAM+ A +G +EAL
Sbjct: 90 TGIEEESIVQTALVSMYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGL 149
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
F +M G+ PN VT + L AC +G + G + GI + +V+L
Sbjct: 150 FRQMDLDGVAPNKVTLVSGLDACASLGDLRSG-ALMHQRVEAQGIQSGVVVGTALVNLYG 208
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGG-CRVHKNIDLAEEASR-QLDQLDPLNNGYH 186
+ G ++ A E + ++ N V W A+ R +N D R L+ L P + +
Sbjct: 209 KCGRIEAAVEAFGQI-VEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFV 267
Query: 187 VVLSNIYAEA---------ERWE--------DVARVRKLMRNLGVKKTPGWSSITVDGVV 229
VL A A ER + DV + L+ + D +
Sbjct: 268 SVLDACAAIAALKQGRRIHERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIA 327
Query: 230 H-------EFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPN 264
H +A + H Q EK +++E+ M+L+G P
Sbjct: 328 HLDLVLWNSLIATNAQHGQTEKALELFER----MRLEGLQPT 365
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 2/170 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ G + + V L+++Y KCG +E A F ++ E+ V WSA+ A + +
Sbjct: 184 MHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYARNDR 243
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHY 120
++A+ ++M G+ PN TF+ +L AC + + +GRR + G+ +
Sbjct: 244 NRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESDVYVL 303
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
+V++ S+ G L A + + + V+W +L+ H + A E
Sbjct: 304 TALVNMYSKCGNLALAGDMFDKIA-HLDLVLWNSLIATNAQHGQTEKALE 352
>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 790
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 160/344 (46%), Positives = 227/344 (65%), Gaps = 1/344 (0%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF ++ N LI MY KCG +E A++VF M +W+A+I L HG EA+ +
Sbjct: 447 GFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVY 506
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+M++ GI+P+ +TF+ +L AC H G VD+GR++F SM T Y I P +HY ++DLL R
Sbjct: 507 EEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCR 566
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
+G EA I ++P KP +W ALL GCRVH N++L A+ +L L P ++G +++L
Sbjct: 567 SGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLL 626
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
SN+YA +WE+VARVRKLMR+ GVKK S I ++ VH F+ D +HP+AE +++
Sbjct: 627 SNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYKYL 686
Query: 250 EKLLDGMKLKGYIPNTSVVLLDIE-EKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKN 308
+ L M+ GY+P+TS VL D+E + KE L HSEK+A+ FGLM PPGT IRI KN
Sbjct: 687 QDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKN 746
Query: 309 LRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
LR C DCH F+ +S++V R+I++RDR RFH F+ G CSCG++W
Sbjct: 747 LRTCGDCHNFFRFLSKVVQRDIILRDRKRFHHFRNGECSCGNFW 790
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 6/156 (3%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N L+ YV G + A+ +F EM+E+ + +W MI GLA +G +E L F+ M G +
Sbjct: 355 NALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFE 414
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P F G + +C +G G++ F++ + G + ++ + ++ G ++EA +
Sbjct: 415 PCDYAFSGAIKSCAVLGAYCNGQQ-FHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQ 473
Query: 139 FIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEE 170
R MP + V W AL+ H + +D+ EE
Sbjct: 474 VFRTMPCL-DSVSWNALIAALGQHGHGVEAVDVYEE 508
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 4/147 (2%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEER-TVFTWSAMIQGLAIHGQAKEALTSFNK 71
++ R T++ YVK GC + + + M+E + ++AMI G G +EAL +
Sbjct: 217 KDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRR 276
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M+ GI+ + T+ ++ AC + + G++ + ++ +V L + G
Sbjct: 277 MVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFSFHFDN--SLVTLYYKCG 334
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGG 158
EA MP K + V W ALL G
Sbjct: 335 KFNEARAIFEKMPAK-DLVSWNALLSG 360
>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
Length = 948
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 154/343 (44%), Positives = 228/343 (66%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G ++ V N LI+MY KCG L + +VF M+ + V TW+A+I ++G+ K+A+ +F
Sbjct: 606 GLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAF 665
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+M GI P+ V F+ ++ AC H G V+EG +F+ M +Y I P+IEHY C+VDLLSR
Sbjct: 666 GEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSR 725
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
+ L +A +FI +MP+KP+ +WGALL CR+ + ++A+ S ++ +L+P + GY+V++
Sbjct: 726 SALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLV 785
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
SN+YA +W+ V +RK ++ G+KK PG S + + V+ F G + Q E++ ++
Sbjct: 786 SNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEVNKLL 845
Query: 250 EKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNL 309
L M +GYI N VL DI+E EK L HSE+LA+ FGL+NT PGTP+++MKNL
Sbjct: 846 GMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNL 905
Query: 310 RVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
RVCEDCH K IS+I RE++VRD NRFH F+ G+CSCGDYW
Sbjct: 906 RVCEDCHTVTKYISKIXQRELLVRDANRFHVFKDGACSCGDYW 948
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 3/158 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+Y SG+ + N LI+MY KCG L ++ VF M+ + +W++MI +G
Sbjct: 397 VHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGS 456
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ F KM++ +KP+ VT++ LL +G + G+ + + G I
Sbjct: 457 FDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDL-AKMGFNSNIVVSN 514
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
+VD+ ++ G + ++ + NM + + + W ++ C
Sbjct: 515 TLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIASC 551
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 2/153 (1%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF NI V NTL+DMY KCG + + +VF M+ R + TW+ +I L
Sbjct: 505 GFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMI 564
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
++M G+ P+ T + +L C + +G+ + + G+ + ++++ S+
Sbjct: 565 SRMRTEGVTPDMATMLSILPVCSLLAAKRQGKE-IHGCIFKLGLESDVPVGNVLIEMYSK 623
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
G L+ +++ + M K + V W AL+ C ++
Sbjct: 624 CGSLRNSFQVFKLMKTK-DVVTWTALISACGMY 655
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 89/183 (48%), Gaps = 9/183 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ GF ++ + N LIDMY + L+ AR+VF EM R V +W+++I G +G
Sbjct: 196 IHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGY 255
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL + + +G+ P+ T +L ACG +G V+EG + + + GI +
Sbjct: 256 WNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG-DIIHGLIEKIGIKKDVIVNN 314
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR----QLDQ 177
++ + + L + M ++ + V W ++ G + + L EE+ + ++Q
Sbjct: 315 GLLSMYCKFNGLIDGRRIFDKMVLR-DAVSWNTMICG---YSQVGLYEESIKLFMEMVNQ 370
Query: 178 LDP 180
P
Sbjct: 371 FKP 373
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 77/155 (49%), Gaps = 3/155 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G ++++ V N L+ MY K L RR+F +M R +W+ MI G + G
Sbjct: 297 IHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGL 356
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+E++ F +M+ KP+ +T +L ACGH+G ++ G+ M T G
Sbjct: 357 YEESIKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITS-GYECDTTASN 414
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
++++ ++ G L + E M K + V W +++
Sbjct: 415 ILINMYAKCGNLLASQEVFSGMKCK-DSVSWNSMI 448
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 46 VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVD-EGRRFF 104
V+ W+++I+ L +G EAL+ +++ I ++P+ TF +++AC G +D E +
Sbjct: 139 VYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACA--GLLDFEMAKSI 196
Query: 105 YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ G + ++D+ R L +A + MP++ + V W +L+ G
Sbjct: 197 HDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLR-DVVSWNSLISG 249
>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
Length = 602
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 160/351 (45%), Positives = 225/351 (64%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
++ + QSG + ++ ++DMY KCGC++ A VF + R + TW+ MI G A+HG+
Sbjct: 252 IYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEAWGVFDSLPARGLTTWNCMIGGFAVHGR 311
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+AL F++M G+ P+ VT + +L AC H G V EGRR+ + + +GI P+ EHYG
Sbjct: 312 CDDALELFHQMEAAGVAPDDVTLLNVLTACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYG 371
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL RAG L EA + I MP+ P+ V GALLG C++H ++DL E ++ LDP
Sbjct: 372 CMVDLFGRAGQLDEAKKVIDEMPMDPDLAVLGALLGACKIHGDVDLGEAIGWRVIDLDPD 431
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +V+L+N+ A A RW++V +VR+LM V K G S I VDG EF G+ HPQ
Sbjct: 432 NSGRYVLLANLLAGAGRWDEVGKVRRLMDERNVSKEAGRSVIEVDGEACEFRCGNLRHPQ 491
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A +I+ M ++ ++ +GY+P+T L D+ E++KE L HSEKLA+ FGL+ P
Sbjct: 492 AREIYAMAVDMVSRIRAEGYVPDTGEALHDVAEEDKEAALLCHSEKLAIAFGLLRARPRE 551
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+RI KNLRVC DCH A K +S + REIVVRDR+RFH F+ G CSC DYW
Sbjct: 552 TLRITKNLRVCRDCHEATKYVSRVFGREIVVRDRSRFHHFKDGMCSCKDYW 602
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 2/158 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
T++ + G ++ AR VF M R + +W++MI G + +AL F++M +G++
Sbjct: 168 TTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMRALGVE 227
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
NG L AC G + GR Y + GI + +VD+ + G + EA+
Sbjct: 228 GNGFVATSALVACTGAGALGRGRE-IYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEAWG 286
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLD 176
++P + W ++GG VH D A E Q++
Sbjct: 287 VFDSLPAR-GLTTWNCMIGGFAVHGRCDDALELFHQME 323
>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25060, mitochondrial-like [Vitis vinifera]
Length = 678
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 165/334 (49%), Positives = 222/334 (66%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
+IDMY KCG L AR VF ++ R +W+A+I IHG +EAL+ F +M E +K
Sbjct: 345 TAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVK 404
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ TF LL A H G V++GR +F M EY I P +HY CMVDLLSRAG ++EA E
Sbjct: 405 PDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQE 464
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAER 198
I +M +P +W ALL GC H + E A++++ +L+P + G + ++SN +A A R
Sbjct: 465 LIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATARR 524
Query: 199 WEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKL 258
W++VA VRK+M+ G+KK PG+S + V+G +H F+ D++H Q E+I Q+ KL MK
Sbjct: 525 WDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDKSHHQYEEIMQVLGKLDYEMKA 584
Query: 259 KGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAA 318
GY+P T VL ++EE+ KE+ L HSE+LA+ FGL+NT PGT + I KNLRVC DCH A
Sbjct: 585 MGYVPKTEFVLHNLEEEVKERMLCNHSERLAIAFGLLNTGPGTRLLITKNLRVCGDCHEA 644
Query: 319 FKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
K IS+IVNREIVVRD RFH F+ G CSCGDYW
Sbjct: 645 TKFISKIVNREIVVRDVKRFHHFKDGVCSCGDYW 678
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 81/149 (54%), Gaps = 2/149 (1%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G+ ++ V ++++Y KCG ++ A RVF +M R + W+ MI GLA +GQA+EA+ +
Sbjct: 135 GYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIY 194
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+M + ++ +GV +GL+ AC +G G M + II + +VD+ ++
Sbjct: 195 RQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRK-DIIMDVIVQTSLVDMYAK 253
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
G L+ A R M K N + W AL+ G
Sbjct: 254 NGHLELASCVFRRMLYK-NVISWSALISG 281
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 16/186 (8%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + ++ V +L+DMY K G LE A VF M + V +WSA+I G A +G
Sbjct: 228 IHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGF 287
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A AL M G KP+ V+ + +L AC +G++ G+ + +G I + H+
Sbjct: 288 AGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGK-------SVHGYIVRRLHFD 340
Query: 122 C-----MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLD 176
C ++D+ S+ G L A + + + + W A++ +H + EEA
Sbjct: 341 CVSSTAVIDMYSKCGSLSFARTVFDQISFR-DSISWNAIIASYGIHGS---GEEALSLFL 396
Query: 177 QLDPLN 182
Q+ N
Sbjct: 397 QMRETN 402
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 2/157 (1%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
LI Y + G +E AR+VF + + V W+AMI + G EAL+ +++M G++P+
Sbjct: 45 LIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPD 104
Query: 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFI 140
T+ +L AC + G + + G + +++L ++ G + EA
Sbjct: 105 SSTYTVVLKACTRSLDLRSGEE-TWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVF 163
Query: 141 RNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
M + + V W ++ G + A + RQ+ +
Sbjct: 164 DKMG-RRDLVCWTTMITGLAQNGQAREAVDIYRQMHK 199
>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 823
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 227/352 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +S F + VCN+LID Y KCG + A +VF + E V +W+++I A+HG
Sbjct: 472 QIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHG 531
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A AL F++M + IK N VTF+ LL CG G V++G F SM ++ I P +EHY
Sbjct: 532 RATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHY 591
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+V LL RAG L +A +FI ++P P+ +VW ALL C VHKN+ L A+ ++ ++P
Sbjct: 592 TCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEP 651
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +V+LSN+YA A ++VA RK MRN+GVKK G S + + G VH F G HP
Sbjct: 652 HDETTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSVGSADHP 711
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
I M E L +GY+P+ +VVL D++E+EK + L+ HSE+LAL +GL TPPG
Sbjct: 712 DMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPG 771
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRIMKNLR C DCH FK+IS+IV REI+VRD NRFH F+ G CSCGDYW
Sbjct: 772 HPIRIMKNLRSCLDCHTMFKVISKIVQREIIVRDINRFHHFEEGICSCGDYW 823
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 120/269 (44%), Gaps = 26/269 (9%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G+ + V N L+DMY KC +E + +F +++ +W+ +I G G
Sbjct: 371 QIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSG 430
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A++AL+ F++M + VTF +L AC + + + +S+ +
Sbjct: 431 FAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQ-IHSLIEKSTFNNDTIVC 489
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
++D ++ GF+++A + ++ ++ + V W +++ +H A+ L+ D
Sbjct: 490 NSLIDTYAKCGFIRDALKVFESI-VECDVVSWNSIISAYALHG------RATNALELFDR 542
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMR--NLGVKKTPGW--SSITVDGVVHEFVAGD 236
+N S+I A DV V L + G+ W +S+ +D H
Sbjct: 543 MNK------SDIKA-----NDVTFVSLLSVCGSTGLVNQGLWLFNSMMMD---HRIKPSM 588
Query: 237 ETHPQAEKIFQMWEKLLDGMKLKGYIPNT 265
E + ++ +L D +K G IP+T
Sbjct: 589 EHYTCIVRLLGRAGRLTDALKFIGDIPST 617
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 76/157 (48%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H S ++ + V L+DMY KCG +E A +F + V WS +I A Q
Sbjct: 271 IHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQ 330
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++A F +M+ + PN + G+L AC ++ +++ G + +++ + G ++
Sbjct: 331 NEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQ-IHNLAIKLGYESELFVGN 389
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ ++ ++ + E ++ N V W ++ G
Sbjct: 390 ALMDMYAKCRNMENSLEIFSSLQ-DANEVSWNTIIVG 425
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 4/157 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G RN V LID Y CG + AR VF + + TW+AM+ + +
Sbjct: 170 IHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDI 229
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHY 120
+ AL +F+KM G KPN L A + G+ S+ T Y P +
Sbjct: 230 PEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVG-- 287
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
G ++D+ ++ G +++A+ +P + ++W L+
Sbjct: 288 GALLDMYAKCGDIEDAHAIFEMIP-HDDVILWSFLIS 323
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 15/122 (12%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N L++ Y K G L ARR+F M ER ++ ++QG A+ G+ +EAL F ++ G +
Sbjct: 86 NVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHE 145
Query: 79 PNGVTFIGLL---------------HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCM 123
N +L HAC D ++ Y + + H C+
Sbjct: 146 VNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCV 205
Query: 124 VD 125
D
Sbjct: 206 FD 207
>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
Length = 652
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 163/354 (46%), Positives = 232/354 (65%), Gaps = 2/354 (0%)
Query: 1 RVHE--YSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAI 58
R+HE + G ++ V L++MY KCG L A +F ++ + W+++I A
Sbjct: 299 RIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQ 358
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
HGQ ++AL F +M G++P +TF +L AC H G +D+GR+ F S ++GI P+ E
Sbjct: 359 HGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAE 418
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
H+GCMVDLL RAG++ ++ + + +MP +P+ V W A LG CR ++N+D A A+ L QL
Sbjct: 419 HFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQL 478
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
DP +V+LSN+YA+A RW DVAR+R+ M+ K G S I V VHEF++GD
Sbjct: 479 DPRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLD 538
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
HP+ +I ++L MK GY+P+T +VL D++++ KE + HSEKLA+ F L+ TP
Sbjct: 539 HPRIGEIHAELQRLTKLMKAAGYVPDTEMVLHDVKQEVKETMVGYHSEKLAMAFALLTTP 598
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G+PIR++KNLRVC DCH A K IS++VNREIVVRD NRFH FQ G+CSCGDYW
Sbjct: 599 EGSPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 652
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 111/282 (39%), Gaps = 32/282 (11%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
+G V L+ +Y K G A VF+ M R V WSAM+ A +G +EAL
Sbjct: 105 TGIEEESIVQTALVSLYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGL 164
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
F +M G+ PN VT + L AC +G + G + GI + +V+L
Sbjct: 165 FRQMDLDGVAPNKVTLVSGLDACASLGDLRSG-ALMHQRVEAQGIQSGVVVGTALVNLYG 223
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGG-CRVHKNIDLAEEASR-QLDQLDPLNNGYH 186
+ G ++ A E + ++ N V W A+ R +N D R L+ L P + +
Sbjct: 224 KCGRIEAAAEAFGQI-VEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFV 282
Query: 187 VVLSNIYAEA---------ERW--------EDVARVRKLMRNLGVKKTPGWSSITVDGVV 229
VL A A ER DV + L+ + D +
Sbjct: 283 SVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIA 342
Query: 230 H-------EFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPN 264
H +A + H Q EK +++E+ M+L+G P
Sbjct: 343 HLDLVLWNSLIATNAQHGQTEKALELFER----MRLEGLQPT 380
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 84/173 (48%), Gaps = 8/173 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ G + + V L+++Y KCG +E A F ++ E+ V WSA+ A + +
Sbjct: 199 MHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYARNDR 258
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM-TTEYGIIPQIEHY 120
++A+ ++M G+ PN TF+ +L AC + + +GRR + G+ +
Sbjct: 259 NRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVL 318
Query: 121 GCMVDLLSRAGFLQEA---YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
+V++ S+ G L A ++ I ++ + V+W +L+ H + A E
Sbjct: 319 TALVNMYSKCGNLALAGNMFDKIAHLDL----VLWNSLIATNAQHGQTEKALE 367
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 110/299 (36%), Gaps = 54/299 (18%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G+ RN +CN LID+Y KC + A VF ++ + VF+W+ M+ A + F
Sbjct: 5 GWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFF 64
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM---------------------- 107
M+ GI P V L AC + GR ++
Sbjct: 65 RGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKL 124
Query: 108 ---TTEYGIIPQIEH-----YGCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALL 156
T + ++ H + MV +R G +EA R M + PN V + L
Sbjct: 125 GHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGL 184
Query: 157 GGCRVHKNIDLAEEASRQLDQLDPLNNGYHV--VLSNIYAEAERWEDVARVRKLMRNLGV 214
C ++ ++++ + +G V L N+Y + R E A +
Sbjct: 185 DACASLGDLRSGALMHQRVEA-QGIQSGVVVGTALVNLYGKCGRIEAAAEA---FGQIVE 240
Query: 215 KKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTS--VVLLD 271
K WS+I+ + D ++L M L+G PN++ V +LD
Sbjct: 241 KNVVAWSAISA-----AYARNDRNRDAI--------RVLHRMDLEGLAPNSTTFVSVLD 286
>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 695
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 161/352 (45%), Positives = 228/352 (64%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH S +G N+ V + LIDMY KCG ++ AR VF M R V +W+AMI G A +G
Sbjct: 344 VHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGH 403
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K+AL F M++ KP+ VTFIG+L AC H W+++G+ +F S+T ++G+ P ++HY
Sbjct: 404 DKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYA 463
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMV+LL R G +++A I+NM P+ ++W LL C +I AE A+R L +LDP
Sbjct: 464 CMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPT 523
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+++LSN+YA RW+DVA VR LM++ VKK G+S I +D VH F + D THP+
Sbjct: 524 IAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPE 583
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG- 300
+E I++ L+ ++ +G+ PNT++VL D+ E EK K + HSEKLAL FGL+ P G
Sbjct: 584 SEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGI 643
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+PIRI+KN+R+C DCH K S I+ R+I++RD NRFH F G CSC D W
Sbjct: 644 SPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 79/141 (56%), Gaps = 2/141 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
+T+I Y +CG ++ ARRVF E +E+ + W+AM+ G A +G+ ++AL FN+M+ I+
Sbjct: 260 STIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIE 319
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ T ++ +C + + G+ + + G+ + ++D+ S+ GF+ +A
Sbjct: 320 PDSYTLSSVVSSCAKLASLHHGQA-VHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARS 378
Query: 139 FIRNMPIKPNGVVWGALLGGC 159
MP + N V W A++ GC
Sbjct: 379 VFNLMPTR-NVVSWNAMIVGC 398
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
F N+ + N L DMY KCG +E AR +F + ++ + +W+ MI G A +GQ ++ +
Sbjct: 185 NFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLL 244
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF 104
++M G P+ VT ++ A G VDE RR F
Sbjct: 245 HQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVF 279
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/171 (19%), Positives = 72/171 (42%), Gaps = 33/171 (19%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ----------------- 61
N L+ +Y K G L A+ +F +M +R +F+W+A++ A G
Sbjct: 62 NQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSV 121
Query: 62 --------------AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM 107
+E+L F +M G +P T + +L+A + + G++ S+
Sbjct: 122 SYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSI 181
Query: 108 TTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ + + + D+ ++ G +++A ++ + K N V W ++ G
Sbjct: 182 IVR-NFLGNVFIWNALTDMYAKCGEIEQA-RWLFDCLTKKNLVSWNLMISG 230
>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 574
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 160/351 (45%), Positives = 233/351 (66%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H YS + GF N +V L+DMY K G + AR +F +EE+ V +W+AMI G A+HG
Sbjct: 225 LHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGH 284
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A EAL F +M + + P+ +TF+G+L AC H G ++EG+ F SM +++ I P ++HY
Sbjct: 285 ANEALDLFKEM-KGKVLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYT 343
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CM+DLL G L+EAY+ I M ++P+ VWGALL C++H N+++ E A +L +L+P
Sbjct: 344 CMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPD 403
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G +V+LSN+YA+A +W+ VAR+R LM N G+KK+ S I V VH F++ D +HP+
Sbjct: 404 DGGNYVILSNMYAQAGKWDGVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPK 463
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+E I+ ++ MK GY P V D+E+ EK + HSE+LA+ FGL++T GT
Sbjct: 464 SEAIYAELKRTGKLMKEAGYAPQVGSVFHDVEDDEKVDMVSCHSERLAIAFGLISTSAGT 523
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ I+KNLR+CEDCH A K IS+I REI +RD NR+H F+ G CSCGD+W
Sbjct: 524 KLLIIKNLRICEDCHVAIKFISKITEREITIRDVNRYHHFKDGVCSCGDFW 574
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 91/175 (52%), Gaps = 2/175 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H+ +SG ++ V LIDMY KCGC+E AR+VF +++ER V W++M+ + +G
Sbjct: 123 KIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNG 182
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q E+L M G+KP TF+ + A G + +G+ + + +G +
Sbjct: 183 QPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKE-LHGYSWRHGFESNDKVK 241
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
++D+ +++G + A + K V W A++ G +H + + A + +++
Sbjct: 242 TALMDMYAKSGSVNVARSLFELLEEK-RVVSWNAMITGYAMHGHANEALDLFKEM 295
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 79/157 (50%), Gaps = 2/157 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Q G N + L+++Y C L A +F + +R +F W+ MI+G A +G
Sbjct: 22 QLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRGYAWNG 81
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ A++ + +M + G+ P+ TF +L AC + ++EG++ + G+ +
Sbjct: 82 PYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK-IHKDVIRSGLESDVFVG 140
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
++D+ ++ G ++ A + + + + V W ++L
Sbjct: 141 AALIDMYAKCGCVESARQVFDKID-ERDVVCWNSMLA 176
>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
Length = 787
Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 157/352 (44%), Positives = 231/352 (65%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + GF N+L+DMY CG LE A +VFI +++ W+ MI +HG+
Sbjct: 436 IHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGR 495
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K A+ F+ M + + P+ +TF+ LL+AC H G ++EG+R +M +Y + P EHY
Sbjct: 496 GKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYA 555
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL RA L+EAY F+++M I+P VW A LG CR+H N L E A+++L LDP
Sbjct: 556 CLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDPD 615
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G +V++SN++A + RW+DV VR M+ G+KK PG S I V VH F+ D++HP+
Sbjct: 616 SPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEVGNKVHTFLVRDKSHPE 675
Query: 242 AEKIFQMWEKLLDGM-KLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ KI+Q ++ + + K GY+P T +VL ++ ++EK + LY HSE+LA+ +GLM+T G
Sbjct: 676 SYKIYQKLAQITEKLEKEGGYVPQTKLVLHNVGKEEKVQMLYGHSERLAIAYGLMSTSEG 735
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPIRI KNLRVC DCH KL+S+ RE++VRD +RFH F+ G CSCGD+W
Sbjct: 736 TPIRITKNLRVCVDCHTFCKLVSKFFERELIVRDASRFHHFEDGVCSCGDFW 787
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 3/158 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERT-VFTWSAMIQGLAIHG 60
+H + G+ + V N+L+ MY KC + GAR++F M ER V +W+++I +++G
Sbjct: 32 IHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLFDRMNERNDVVSWNSIISAYSLNG 91
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q EAL F +M + G+ N T + L AC + G ++ ++ +
Sbjct: 92 QCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVL-DVYVA 150
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V + R G + A + K N + W +++ G
Sbjct: 151 NALVAMHVRFGKMSYAARIFDELDEKDN-ITWNSMIAG 187
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 57/100 (57%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +S ++ V N L+ M+V+ G + A R+F E++E+ TW++MI G +G
Sbjct: 134 IHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGL 193
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR 101
EAL F + + +KP+ V+ I +L A G +G++ G+
Sbjct: 194 YNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGK 233
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y+ + G ++ + N +ID+Y CG + A R+F ++ + V +W++MI +G
Sbjct: 336 VHGYTLKRGLS-DLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGL 394
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A EAL F M E ++P+ +T + +L A + +++G+ + G + +
Sbjct: 395 ANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKE-IHGFIFRKGFMLEGSTVN 453
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ + G L+ AY+ K + V+W ++ +H
Sbjct: 454 SLVDMYACCGSLENAYKVFICTRSK-SLVLWTTMINAYGMH 493
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 6/170 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ ++ N+R+ NTLIDMY KC C+ A VF +M + + +W+ +I A +
Sbjct: 235 IHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNC 294
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL K+ G+ + + L AC + + + + T + G + +
Sbjct: 295 HTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKE-VHGYTLKRG-LSDLMMQN 352
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
++D+ + G + A ++ K + V W +++ C VH LA EA
Sbjct: 353 MIIDVYADCGNINYATRMFESIKCK-DVVSWTSMI-SCYVHNG--LANEA 398
>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 591
Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 153/354 (43%), Positives = 229/354 (64%), Gaps = 2/354 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH++ +++G + + NTL+ MY +CG ++ A VF M ER V +W+AMI GLA++G
Sbjct: 238 QVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYEVFNRMRERNVVSWTAMISGLAMNG 297
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTT-EYGIIPQIEH 119
KEA+ +FN+M++ GI P T GLL AC H G VDEG FF M + E+ I P + H
Sbjct: 298 FGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVDEGMMFFDRMRSGEFKIKPNLHH 357
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YGC+VDLL RA L +AY I++M +KP+ +W LLG CRVH N++L E L +
Sbjct: 358 YGCIVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGNVELGERVIAHLIEFK 417
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
G +V+L N Y+ +WE V +R LM+ ++ PG S+I + G VHEF+ D +H
Sbjct: 418 AEEAGDYVLLLNTYSSVGKWEKVTELRSLMKKKRIQTNPGCSAIELQGTVHEFIVDDVSH 477
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYR-HSEKLALTFGLMNTP 298
P+ E+I++M ++ +K+ GY+ + L +++ +E++ + R HSEKLA+ FG++ TP
Sbjct: 478 PRKEEIYKMLAEINQQLKIAGYVAEITSELHNLDSEEEKGYALRYHSEKLAIAFGILVTP 537
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P T IR+ KNLR C DCH K +S++ +R ++VRDR+RFH F+ GSCSC D+W
Sbjct: 538 PETTIRVTKNLRTCVDCHNFAKFVSDVYDRVVIVRDRSRFHHFKGGSCSCNDFW 591
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 5/161 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H GF + + TL+D+Y C A +VF E+ +R +W+ +I +
Sbjct: 134 QIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPQRDTVSWNVLISCYLRNK 193
Query: 61 QAKEALTSFNKM---IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
+ ++ L F+KM ++ +KP+ VT + L AC ++G +D G++ + E G+ +
Sbjct: 194 RTRDVLVLFDKMKNDVDRCVKPDNVTCLLALQACANLGALDFGKQ-VHDFIDENGLSGAL 252
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V + SR G + +AYE M + N V W A++ G
Sbjct: 253 NLSNTLVSMYSRCGSMDKAYEVFNRMR-ERNVVSWTAMISG 292
>gi|414879943|tpg|DAA57074.1| TPA: hypothetical protein ZEAMMB73_804341 [Zea mays]
Length = 1056
Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 154/345 (44%), Positives = 231/345 (66%), Gaps = 2/345 (0%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GFR N+++CN LI+ + +CG L A+++F EM +++ +W+A+I G +HG A++ F
Sbjct: 712 GFRTNVQLCNALINFHARCGSLPRAQQLFDEMPAKSIVSWTALITGHGMHGNGGVAVSLF 771
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+M+ GI P+ V +G+L AC H G DEGR +F +M + Y + P +EHY C+VDLL R
Sbjct: 772 ERMVSEGIHPDNVAMVGVLSACSHAGLYDEGRMYFSTMESVYKLRPTLEHYTCIVDLLGR 831
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
AG L+EA E I +MP+ +G VWGALLG C++HKN+++ EEA ++ +L+P N GY+V++
Sbjct: 832 AGRLEEARELISSMPMPADGAVWGALLGACKIHKNVEIGEEAFARVVELEPRNVGYYVLM 891
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
SNIY + + + VARVR +MR G+KK PG S + +G VH F+A D +HPQA +I+++
Sbjct: 892 SNIYTDTGQLDCVARVRAVMRKRGLKKEPGCSYVEHNGRVHLFMADDHSHPQARRIYELV 951
Query: 250 EKLLDGMKLKGYIPNTSVVLLD--IEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMK 307
+L +K K + + V + +E++ + + HSEKLA+ FGL+NT G+ I ++K
Sbjct: 952 TRLELMVKEKSGVRESVVAVPKGRMEKEAAQPLVGFHSEKLAVAFGLLNTEAGSEIVVIK 1011
Query: 308 NLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
NLRVC DCH+ K +S NR +VRD +RFH F G CSC DYW
Sbjct: 1012 NLRVCGDCHSFLKAVSATTNRSFLVRDASRFHRFDGGVCSCKDYW 1056
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 9/172 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGA--RRVFIEME--ERTVFTWSAMIQGL 56
+VH + Q G V N L+ Y + G A RRVF EM R + +W+A++
Sbjct: 593 QVHALAAQVGLATETSVANCLMSTYARGGAFGAALARRVFDEMPLASRDLVSWNAVLSAH 652
Query: 57 AIHGQAKEALTSFNKMIEI---GIKPNGVTFIGLLHACGHMGWVDEG-RRFFYSMTTEYG 112
A +G A +AL + +M G++P+ VT +G+L + H+G G Y + G
Sbjct: 653 AQNGLAVDALDLYRRMRSPEGSGVEPDAVTIVGVLSSAAHLGARGVGFDAEHYVVQRLPG 712
Query: 113 IIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKN 164
++ +++ +R G L A + MP K + V W AL+ G +H N
Sbjct: 713 FRTNVQLCNALINFHARCGSLPRAQQLFDEMPAK-SIVSWTALITGHGMHGN 763
>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
Length = 655
Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 164/346 (47%), Positives = 230/346 (66%), Gaps = 1/346 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y N+ ++ + L++MY KCGC+E A+ VF M + WS+MI GLAI+G
Sbjct: 284 VHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGL 343
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A++AL F +M E +KPN VTFIG+L AC H G V EGRR++ SM E+GI+P +E YG
Sbjct: 344 AEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSML-EFGIVPSMELYG 402
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RA +++A + MPI PN V+W LL GC+ KN+D +E +++L +L+P
Sbjct: 403 CMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPH 462
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N +++LSN+YA +WE +++VRK M+ +G+K PG SSI VDG+VHEFV GD +HP+
Sbjct: 463 NAENYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPE 522
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A ++ ++ + + G+ P S VL ++ ++EKE L HSE+LA+ +GL+ T
Sbjct: 523 AMEVREILRDISKRVHAVGHQPGISDVLHNVVDEEKENALCEHSERLAIAYGLLKTKTPM 582
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCS 347
IRI+KNLRVC DCH K+IS REI+VRDR RFH F GSCS
Sbjct: 583 AIRIVKNLRVCGDCHEVTKIISAEYRREIIVRDRVRFHKFVNGSCS 628
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 132/293 (45%), Gaps = 18/293 (6%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH +SGF + V L++ Y KC + A +VF E+ +R + WS MI G A G
Sbjct: 182 QVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIG 241
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL F M + G+ P+ VT + ++ AC G +D G ++ ++ + I +E
Sbjct: 242 LVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTG-KWVHAYINKQLIETDLELS 300
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+V++ ++ G ++ A E MP+K + W +++ G ++ LAE+A + +++
Sbjct: 301 TALVNMYAKCGCIERAKEVFDAMPVK-DTKAWSSMIVGLAIN---GLAEDALEEFFRMEE 356
Query: 181 LN-NGYHVVLSNIYAEAERWEDVARVRKL---MRNLGVKKTPGWSSITVDGVVHEFVAGD 236
HV + + V+ R+ M G+ + VD + + D
Sbjct: 357 AKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRASLVED 416
Query: 237 -----ETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVV---LLDIEEKEKEKFL 281
ET P + +W LL G K + + VV LL++E E ++
Sbjct: 417 ACTLVETMPISPNPV-IWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYI 468
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 112/258 (43%), Gaps = 44/258 (17%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLA-IHGQAKEALTSFNKMIEIGI-KPNGVTFIG 86
G ++ AR++F +++ +F+W++MI+G + +KE + F KM+ G PN T
Sbjct: 107 GDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAF 166
Query: 87 LLHACGHMGWVDEGRRFFYS-MTTEYGIIPQIE--------------------------- 118
+L AC + ++EG++ + + + +G P +E
Sbjct: 167 VLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRN 226
Query: 119 --HYGCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGCRVHKNIDLAEEASR 173
+ M+ +R G + EA R+M + P+ V +++ C +D +
Sbjct: 227 LVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHA 286
Query: 174 QLD-QLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEF 232
++ QL + L N+YA+ E R +++ + VK T WSS+ V G+
Sbjct: 287 YINKQLIETDLELSTALVNMYAKCGCIE---RAKEVFDAMPVKDTKAWSSMIV-GLAING 342
Query: 233 VAGDETHPQAEKIFQMWE 250
+A D E+ F+M E
Sbjct: 343 LAEDAL----EEFFRMEE 356
>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Brachypodium distachyon]
Length = 861
Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 161/353 (45%), Positives = 218/353 (61%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ + ++ V + L+DMY KCGCL AR VF + R V TW+ +I +HG
Sbjct: 509 IHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVITWNVLIMAYGMHGL 568
Query: 62 AKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL F++M+ G PN VTFI L AC H G VD G F M +YG P +
Sbjct: 569 GDEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLH 628
Query: 121 GCMVDLLSRAGFLQEAYEFIRNM-PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
C+VD+L RAG L EAY I +M P + W +LG CR+H+N+ L A+ +L +L+
Sbjct: 629 ACVVDVLGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLGRIAAERLFELE 688
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P ++V+L NIY+ A WE+ VR +MR GV K PG S I +DG +H F+AG+ H
Sbjct: 689 PDEASHYVLLCNIYSAAGLWENSTEVRGMMRQRGVAKEPGCSWIELDGAIHRFMAGESAH 748
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P++ ++ + L + M+ +GY+P+TS VL D++E EK L HSEKLA+ FGL+ PP
Sbjct: 749 PESAQVHAHMDALWERMRREGYVPDTSCVLHDVDEAEKAAMLRYHSEKLAIAFGLLRAPP 808
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G IR+ KNLRVC DCH A K IS +V REIV+RD RFH F+ G+CSCGDYW
Sbjct: 809 GATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFRDGTCSCGDYW 861
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 6/166 (3%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEE--RTVFTWSAMIQGLAIH-GQAKEALTSFN 70
N V + L+DMY + ARRVF + E R + W+AMI G A H G +EA+ F+
Sbjct: 295 NSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFS 354
Query: 71 KM-IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+M E G P+ T G+L AC V G+ + + + ++D+ +R
Sbjct: 355 RMEAEAGCAPSETTMAGVLPACAR-SEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYAR 413
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
G + EA+ + ++ + V W L+ GC V I A + R++
Sbjct: 414 LGRMDEAHTIFAMIDLR-DIVSWNTLITGCIVQGLISEAFQLVREM 458
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 8/176 (4%)
Query: 2 VHEYSNQSGFRRNIR---VCNTLIDMYVKCGCLEGARRVFIEMEERT--VFTWSAMIQGL 56
H ++ + GF R N L+ MY + G ++ A+R+F + TW+ MI L
Sbjct: 176 AHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMISLL 235
Query: 57 AIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ 116
G+ +EA+ M+ +G++P+GVTF L AC + + GR + + +
Sbjct: 236 VQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLAAN 295
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGV-VWGALLGGCRVHKNIDLAEEA 171
+VD+ + + A +P + +W A++ G H +D EEA
Sbjct: 296 SFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMD--EEA 349
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 25/197 (12%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y + N V N L+DMY + G ++ A +F ++ R + +W+ +I G + G
Sbjct: 388 VHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGL 447
Query: 62 AKEAL------------TSFNKMIEIG--------IKPNGVTFIGLLHACGHMGWVDEGR 101
EA S M+E PN +T + LL C + G+
Sbjct: 448 ISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGK 507
Query: 102 RFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRV 161
+ + + + +VD+ ++ G L A +P + N + W L+ +
Sbjct: 508 E-IHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLP-RRNVITWNVLIMAYGM 565
Query: 162 HKNIDLAEEASRQLDQL 178
H L +EA D++
Sbjct: 566 HG---LGDEALALFDRM 579
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 12/140 (8%)
Query: 84 FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM 143
F LL +G VD+ +R F+S G + + M+ LL + G +EA + + +M
Sbjct: 195 FNALLSMYARLGLVDDAQRLFFSSGAGVG---DLVTWNTMISLLVQGGRCEEAVQVLYDM 251
Query: 144 ---PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL--NNGYHVVLSNIYAEAER 198
++P+GV + + L C + + + E + + D L N+ L ++YA E+
Sbjct: 252 VALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNEQ 311
Query: 199 WEDVARVRKLM----RNLGV 214
RV ++ R LG+
Sbjct: 312 VSHARRVFDMVPEHGRQLGM 331
>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Brachypodium distachyon]
Length = 635
Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 156/351 (44%), Positives = 232/351 (66%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VHE ++G ++ V L+DM+ KCGC+ AR VF M R VF W+AMI GLA HG
Sbjct: 285 VHEVVQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNAMICGLASHGL 344
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++A+ F + ++ G+ P +TF+G+L+AC G V EGRR+F M +Y I P++EHYG
Sbjct: 345 GQDAVELFWRFLDEGLWPTDITFVGVLNACSRCGLVAEGRRYFKLMVDKYRIEPEMEHYG 404
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG + EA E I M I P+ V+WG +L C+ H +DL +L +L+P
Sbjct: 405 CMVDLLGRAGLVSEAIELIEGMHIAPDPVLWGTVLSACKTHNLVDLGITVGNKLIELEPA 464
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G++V+L++IYA+A++W++V VRKLM + G K+ GWS + G +H+F+ GD H
Sbjct: 465 HDGHYVLLASIYAKAKKWDEVREVRKLMSSRGTGKSAGWSLMEAQGNLHKFLVGDMDHKD 524
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ +I+ M + + + GY+P+ S VL DI ++EK + HSE+LA+ +G + T G+
Sbjct: 525 SVQIYNMLDMINRRLADAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVTEVGS 584
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNL+VC DCH K+++++ NREI+VRD +RFH + G CSC DYW
Sbjct: 585 PIRIVKNLQVCGDCHEFSKMVTKVFNREIIVRDGSRFHHMKEGKCSCLDYW 635
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 2/150 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ N ++ YV+ G + AR VF EM R +WS ++ G G+ AL F M
Sbjct: 195 RDVVTWNAVLAGYVRAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDM 254
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+E G++ N + L A MG ++ G RF + + G+ + +VD+ S+ G
Sbjct: 255 VEKGVRVNEAAVVTALSAAAQMGLLEHG-RFVHEVVQRTGMPVSVNVGAALVDMFSKCGC 313
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ A E MP + + W A++ G H
Sbjct: 314 VAVAREVFDGMP-RRDVFAWNAMICGLASH 342
>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Cucumis sativus]
Length = 602
Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 157/352 (44%), Positives = 223/352 (63%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H Y Q G+ +CN+LI MY +CG ++ A VF +M E+ V +WSAMI GL+++G
Sbjct: 251 RIHGYIQQHGYNTESNLCNSLISMYSRCGRMDKAYEVFDKMTEKNVVSWSAMISGLSMNG 310
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ +F +M + G++P TF +L AC H G VDEG FF M E+ I P + HY
Sbjct: 311 HGREAIEAFWEMQKNGVEPGDHTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIAPNVHHY 370
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GC+VDLL RAG L +AYE I +M ++P+ +W LLG CR+H + +L E L +L
Sbjct: 371 GCIVDLLGRAGMLDQAYELIMSMEVRPDATMWRTLLGACRIHGHGNLGERIVEHLIELKS 430
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
G +V+L NIY+ A W+ V +RKLM+ G+ TP ++I ++GVVH+F D +HP
Sbjct: 431 QEAGDYVLLLNIYSSAGNWDKVTELRKLMKEKGIYTTPCCTTIELNGVVHQFAVDDISHP 490
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+KI++ +++ +K+ GY S L +E K+K L HSEKLA+ FG++ TPPG
Sbjct: 491 MKDKIYKQLDEINKQLKIAGYEAEMSSELHRLEPKDKGYALSNHSEKLAIAFGVLATPPG 550
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI N+R C DCH K IS + NR++VVRDR+RFH FQ G CSC D+W
Sbjct: 551 RTIRIANNIRTCMDCHNFAKYISSVYNRKVVVRDRSRFHHFQEGRCSCNDFW 602
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 117/265 (44%), Gaps = 18/265 (6%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
+G + + + +++D+Y CG E A ++F E+ ++ V W+ +I L + + ++AL
Sbjct: 156 NGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCLTRNKRTRDALGL 215
Query: 69 FNKMIEIG--IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126
F M +P+ VT + LL AC + ++ G R + ++G + ++ +
Sbjct: 216 FEIMQSPTYLCQPDKVTCLLLLQACADLNALEFGER-IHGYIQQHGYNTESNLCNSLISM 274
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA--SRQLDQLDPLNNG 184
SR G + +AYE M K N V W A++ G ++ + A EA Q + ++P ++
Sbjct: 275 YSRCGRMDKAYEVFDKMTEK-NVVSWSAMISGLSMNGHGREAIEAFWEMQKNGVEPGDHT 333
Query: 185 YHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGV--------VHEFVAGD 236
+ VLS E +A ++ + + VD + +E +
Sbjct: 334 FTAVLSACSHCGLVDEGMAFFDRMRQEFMIAPNVHHYGCIVDLLGRAGMLDQAYELIMSM 393
Query: 237 ETHPQAEKIFQMWEKLLDGMKLKGY 261
E P A MW LL ++ G+
Sbjct: 394 EVRPDA----TMWRTLLGACRIHGH 414
>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Glycine max]
Length = 911
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 161/351 (45%), Positives = 228/351 (64%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +S + GF +I + LIDMY K G L+ A VF ++E+T+ W+ M+ G AI+G
Sbjct: 561 IHCFSMKHGFVDDIYIATALIDMYSKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGH 620
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+E T F+ M + GI+P+ +TF LL C + G V +G ++F SM T+Y I P IEHY
Sbjct: 621 GEEVFTLFDNMCKTGIRPDAITFTALLSGCKNSGLVMDGWKYFDSMKTDYSINPTIEHYS 680
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL +AGFL EA +FI MP K + +WGA+L CR+HK+I +AE A+R L +L+P
Sbjct: 681 CMVDLLGKAGFLDEALDFIHAMPQKADASIWGAVLAACRLHKDIKIAEIAARNLFRLEPY 740
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+ +V++ NIY+ ERW DV R+++ M +GVK WS I V +H F ++HP+
Sbjct: 741 NSANYVLMMNIYSTFERWGDVERLKESMTAMGVKIPNVWSWIQVRQTIHVFSTEGKSHPE 800
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I+ +L+ +K GY+P+T+ V +I++ EKEK L H+EKLA+T+GLM GT
Sbjct: 801 EGEIYFDLYQLISEIKKLGYVPDTNCVHQNIDDSEKEKVLLSHTEKLAMTYGLMKIKGGT 860
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR++KN R+C+DCH A K IS NREI +RD RFH F G CSC D W
Sbjct: 861 PIRVVKNTRICQDCHTAAKYISLARNREIFLRDGGRFHHFMNGECSCNDRW 911
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 108/255 (42%), Gaps = 17/255 (6%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y +S ++ VC +L+DMY+K CLE A VF + + + W+++I G G
Sbjct: 390 IHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWNSLISGYTYKGL 449
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A +M E GIK + VT+ L+ G +E + + G+ P + +
Sbjct: 450 FDNAEKLLIQMKEEGIKADLVTWNSLVSGYSMSGCSEEALAVINRIKS-LGLTPNVVSWT 508
Query: 122 CMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
M+ + +A +F M +KPN LL C + EE +
Sbjct: 509 AMISGCCQNENYTDALQFFSQMQEENVKPNSTTISTLLRACAGPSLLKKGEEIHCFSMKH 568
Query: 179 DPLNNGY-HVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDE 237
+++ Y L ++Y++ + + ++ RN+ K P W+ + + G
Sbjct: 569 GFVDDIYIATALIDMYSKGGK---LKVAHEVFRNIKEKTLPCWNCMMM---------GYA 616
Query: 238 THPQAEKIFQMWEKL 252
+ E++F +++ +
Sbjct: 617 IYGHGEEVFTLFDNM 631
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 12/171 (7%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTV----FTWSAMIQGLAIHGQAKEALTSF 69
N+ N++I Y GCL GA +F EME ++ TW++++ G + G + LT+
Sbjct: 297 NLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYENVLTNI 356
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGC--MVDL 126
+ G KP+ + L A +G+ + G+ Y M ++ + + Y C +VD+
Sbjct: 357 RSLQSAGFKPDSCSITSALQAVIELGYFNLGKEIHGYIMRSKL----EYDVYVCTSLVDM 412
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
+ L++A E + + N W +L+ G D AE+ Q+ +
Sbjct: 413 YIKNDCLEKA-EVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKE 462
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y + G N +CN+++ MY + LE AR VF E+ + +W+++I A++G
Sbjct: 253 QIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTEDHNLASWNSIISSYAVNG 312
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM 94
A F +M IKP+ +T+ LL GH+
Sbjct: 313 CLNGAWDLFREMESSSIKPDIITWNSLLS--GHL 344
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 77/191 (40%), Gaps = 35/191 (18%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + GF+ ++ + LI++Y KC ++ A +VF E + F W+ ++ +
Sbjct: 153 VHACLLKRGFQVDVHLSCALINLYEKCLGIDRANQVFDETPLQEDFLWNTIVMANLRSER 212
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++AL +M K T + LL ACG + ++EG++ + +G +
Sbjct: 213 WEDALELSRRMQSASAKATDGTIVKLLQACGKLRALNEGKQ-IHGYVIRFGRVSNTSICN 271
Query: 122 CMVDLLSR-------------------------------AGFLQEAYEFIRNM---PIKP 147
+V + SR G L A++ R M IKP
Sbjct: 272 SIVSMYSRNNRLELARAVFDSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKP 331
Query: 148 NGVVWGALLGG 158
+ + W +LL G
Sbjct: 332 DIITWNSLLSG 342
>gi|125583346|gb|EAZ24277.1| hypothetical protein OsJ_08028 [Oryza sativa Japonica Group]
Length = 613
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 148/341 (43%), Positives = 228/341 (66%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
R N + +L+DMY KCGC+E A VF M+++ +T+SAM+ GLA+HG ++AL F+
Sbjct: 273 RLNTFMSTSLVDMYAKCGCIENAAAVFDAMDDKNAWTYSAMVSGLALHGDGRKALEVFDA 332
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M+ G +P+ ++G+L+AC G ++EG R F M E+ + P +HYGCMVDL++RAG
Sbjct: 333 MVREGHRPDAAVYVGVLNACSRAGLLEEGLRCFDRMRLEHKLTPNAQHYGCMVDLMARAG 392
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSN 191
L +A I +MP P W +LL CR+H N++LAE A ++L++L N G +++LS+
Sbjct: 393 RLDDARALIGSMPTGPTDTAWRSLLNACRIHGNLELAERALQELERLGATNAGDYIILSD 452
Query: 192 IYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEK 251
++A A + A R + G+ + PG+S++ V G H FV+ D +HP+A+ I++M +
Sbjct: 453 MHARAHNRDAAAARRTEAVDRGLAQAPGYSAVEVHGATHRFVSQDRSHPRADDIYEMLHQ 512
Query: 252 LLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRV 311
+ ++ +GY P+TS + LD E+EK + + HS+KLA+ FGL++TP G P+R++ NLR+
Sbjct: 513 MEWQLRFEGYTPDTSELALDAGEEEKRRVVAAHSQKLAMAFGLLSTPEGAPVRVVTNLRM 572
Query: 312 CEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
++CHA LISEI REIVVRDRNRFH F+ G+CSC +YW
Sbjct: 573 SKECHAYSALISEIFGREIVVRDRNRFHRFKRGACSCRNYW 613
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 4/157 (2%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME--ERTVFTWSAMIQGLAIHGQAKEALT 67
GF+R+ N+LI Y KCG + ARR F +ME E+T +WSA++ G+ E +
Sbjct: 168 GFQRDEHSQNSLISFYGKCGEADLARRAFEQMEDDEQTTASWSALLAAYTRAGRWAECVE 227
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
SF M+ G +P+ + + L AC H+G D GR ++ + +VD+
Sbjct: 228 SFGAMVRAGWRPDESSMVSALSACAHLGAHDVGRSIHCALLRNTARLNTFMSTS-LVDMY 286
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKN 164
++ G ++ A M K N + A++ G +H +
Sbjct: 287 AKCGCIENAAAVFDAMDDK-NAWTYSAMVSGLALHGD 322
>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
Length = 920
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 156/352 (44%), Positives = 227/352 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + ++G V N LI +Y KCG +E A+ +F EM R +W+ +I + HG
Sbjct: 569 QVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHG 628
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EAL F++M + G+KPN VTFIG+L AC H+G V+EG +F SM+ YG+ P +HY
Sbjct: 629 RGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHY 688
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VD+L RAG L A F+ MPI N ++W LL C+VHKNI++ E A++ L +L+P
Sbjct: 689 ACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEP 748
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+LSN YA +W + +VRK+M++ G++K PG S I V VH F GD HP
Sbjct: 749 HDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHP 808
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+++I++ +L D + GY + + E+++K+ + HSEKLA+ FGLM PP
Sbjct: 809 LSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPC 868
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P+R++KNLRVC+DCH+ K SE+ REIV+RD RFH F +GSCSCGDYW
Sbjct: 869 IPLRVIKNLRVCDDCHSWMKFTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 83/158 (52%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S ++GF ++ V LIDMY K CL+ AR++ +E+R V +W++MI G H
Sbjct: 367 QIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHD 426
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL +F +M + G+ P+ + AC + + +G + ++ G I +
Sbjct: 427 FCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQ-IHARVYVSGYAADISIW 485
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V+L +R G +EA+ R + K + + W L+ G
Sbjct: 486 NTLVNLYARCGRSEEAFSLFREIDHK-DEITWNGLISG 522
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 80/162 (49%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H SG+ +I + NTL+++Y +CG E A +F E++ + TW+ +I G
Sbjct: 468 QIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSR 527
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++AL F KM + G K N TFI + A ++ + +G++ + + G + E
Sbjct: 528 LYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQ-VHGRAVKTGHTSETEVA 586
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++ L + G +++A M ++ N V W ++ C H
Sbjct: 587 NALISLYGKCGSIEDAKMIFSEMSLR-NEVSWNTIITSCSQH 627
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 5/171 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y ++G + +L+D+YVKCG +E A +F + V W+ M+
Sbjct: 266 QLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQIS 325
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++ F +M GI PN T+ +L C G ++ G + +S++ + G +
Sbjct: 326 DLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQ-IHSLSIKNGFESDMYVS 384
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
G ++D+ S+ L +A + I M K + V W +++ G H D EEA
Sbjct: 385 GVLIDMYSKYRCLDKARK-ILEMLEKRDVVSWTSMIAGYVQH---DFCEEA 431
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 79/155 (50%), Gaps = 2/155 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + F V N LI +Y+ G + A RVF +M T++ +I G A G
Sbjct: 166 IHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGH 225
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ AL F++M G++P+ VT LL AC +G + +G++ +S + G+ G
Sbjct: 226 GECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQ-LHSYLLKAGMSFDYITEG 284
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
++DL + G ++ A++ I N+ + N V+W +L
Sbjct: 285 SLLDLYVKCGDIETAHD-IFNLGDRTNVVLWNLML 318
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H S G + + N LID+Y K G + AR+VF E+ R +W AM+ G A G
Sbjct: 65 IHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGL 124
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR 101
KEA +++M + P +L AC +GR
Sbjct: 125 GKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGR 164
>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
Length = 609
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 159/352 (45%), Positives = 232/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H SG+ + + N L+DMY KC + AR VF M R V +W+++I G A HG
Sbjct: 258 QIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHG 317
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+AKEAL +++M+ IKPN VTF+GL++AC H G V +GR+ F +M +Y I P ++ +
Sbjct: 318 RAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQLF 377
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C +DLLSR+G L EA + I+ MP KP+ W ALL C+ H N ++ + +L L+
Sbjct: 378 TCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRIADRLLSLNM 437
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+V+LSN+YA A +WE ++RVRKLM ++ VK+ PG+SSI + F AG+ HP
Sbjct: 438 HEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSIDLGKESQVFHAGETCHP 497
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++IF + ++L M+ +GYIP+TS VL D+EE+EKE+ L+ HSE+ A+ +GL+ PG
Sbjct: 498 MKDEIFGLLKELDAEMRKRGYIPDTSYVLHDMEEQEKERELFWHSERWAVAYGLLKAVPG 557
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IRI+KNLR+C DCH KL S IV++EI+VRD R+H F+ G CSC D+W
Sbjct: 558 TVIRIVKNLRICGDCHTFLKLTSSIVHKEIIVRDATRYHHFKDGRCSCNDFW 609
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SG + + NTL+D Y KC L+ A +F EM +R +W+++ L +
Sbjct: 23 KIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDHVSWASI---LTAYN 79
Query: 61 QAK---EALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGR----RFFYSMTTEYG 112
QAK + L+ F+ M ++P+ + LL AC + + G+ RF S +
Sbjct: 80 QAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDDD 139
Query: 113 IIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ +VD+ ++ G A ++ +K V W A+L G
Sbjct: 140 VVK-----SSLVDMYAKCGLPSIARSVFDSILVK-TSVSWTAMLSG 179
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH S F + V ++L+DMY KCG AR VF + +T +W+AM+ G A G
Sbjct: 125 QVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSG 184
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE 110
EA+ F + ++ N ++ L+ G+ +G F M E
Sbjct: 185 LKDEAMELF---LRTPVR-NLYSWTALISGLVQSGYCIDGCYMFIEMRRE 230
>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g14050, mitochondrial; Flags: Precursor
gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 160/357 (44%), Positives = 227/357 (63%), Gaps = 8/357 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH GF + + N LIDMY KC + A+ +F M R V +W+++I G+A HG
Sbjct: 259 QVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHG 318
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
QA++AL ++ M+ G+KPN VTF+GL++AC H+G+V++GR F SMT +YGI P ++HY
Sbjct: 319 QAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHY 378
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC----RVHKNIDLAEEASRQLD 176
C++DLL R+G L EA I MP P+ W ALL C R I +A+
Sbjct: 379 TCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFK 438
Query: 177 QLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGD 236
DP +++LSNIYA A W V+ R+ + + V+K PG SS+ V F AG+
Sbjct: 439 LKDP---STYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGE 495
Query: 237 ETHPQAEKIFQMWEKLLDGMKLK-GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLM 295
+HP E IF++ +KL + M+++ GY+P+TS +L D++E+EKEK L+ HSE+ A+ +GL+
Sbjct: 496 TSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLL 555
Query: 296 NTPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PGTPIRI+KNLRVC DCH K ISEI REI+VRD R+H F+ G CSC D+W
Sbjct: 556 KAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDFW 612
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 5/159 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGL-AIHG 60
+H + + G + + NTL+++Y KCG A +VF EM R W++++ L +
Sbjct: 25 LHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANL 84
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEH 119
K + G++P+ F L+ AC ++G +D GR+ + + +EY ++
Sbjct: 85 SGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVK- 143
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ ++ G L A ++ +K N + W A++ G
Sbjct: 144 -SSLVDMYAKCGLLNSAKAVFDSIRVK-NTISWTAMVSG 180
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V EY+N + ++L+DMY KCG L A+ VF + + +W+AM+ G A G+
Sbjct: 133 VSEYANDEVVK------SSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGR 186
Query: 62 AKEALTSF 69
+EAL F
Sbjct: 187 KEEALELF 194
>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 558
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 159/351 (45%), Positives = 225/351 (64%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V + + G ++ + LIDM+ +CG ++ + VF +M R V TW+A+I GL +HG+
Sbjct: 208 VRAFIGRLGLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGVHGR 267
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ EAL F+ M + G++P+ VTF G+L AC H G V EG F S+ Y + P ++HYG
Sbjct: 268 STEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYRMDPLLDHYG 327
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+L RAG L EAY+F+ MP+KPN ++W LLG C H N+ LAE+ ++ ++
Sbjct: 328 CMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGACVNHNNLGLAEKVKAKISKISSS 387
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
NG V+LSN+Y A RW + A +R MR + K PG SSI VD +HEFV+GD +HPQ
Sbjct: 388 QNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKEPGCSSINVDQTIHEFVSGDNSHPQ 447
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+E I + ++ ++ +GY+ T VL DIEE+E+E L HSEKLA+ F +++
Sbjct: 448 SEDITKFLSSIIGDLRNRGYMMQTKNVLHDIEEEEREHSLSYHSEKLAVAFAILSMKDKR 507
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRIMKNLR+C DCH+ K IS R+I++RDRNRFH F+ G CSC DYW
Sbjct: 508 TIRIMKNLRICYDCHSFMKHISVRFERKIIIRDRNRFHHFEKGLCSCHDYW 558
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G +I V N LI +Y CG LE A +VF EM ER +WS +I +G
Sbjct: 106 LHSLIVKYGLDSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGY 165
Query: 62 AKEALTSFNKM-IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A EAL F KM +E + P+ VT + ++ A H+G ++ G R+ + G+ +
Sbjct: 166 ASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELG-RWVRAFIGRLGLGVSVALG 224
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ SR G + E+ M ++ N + W AL+ G VH
Sbjct: 225 TALIDMFSRCGSIDESIVVFEKMAVR-NVLTWTALINGLGVH 265
>gi|293334801|ref|NP_001169361.1| uncharacterized protein LOC100383228 [Zea mays]
gi|224028917|gb|ACN33534.1| unknown [Zea mays]
Length = 596
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 168/353 (47%), Positives = 234/353 (66%), Gaps = 7/353 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIH 59
VHE++ G N+ V N LIDMY KCG L A VF I++E+RT+ +++A IQ L+IH
Sbjct: 249 VHEFARTIGAVDNVCVGNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSIH 308
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G ++AL F++M I+P+ +T++ ++ C H G VD+GRR F SM + P ++H
Sbjct: 309 GHGEDALKLFDEM-PARIEPDEITYLAVMGGCNHAGLVDDGRRVFDSMR----VPPNMKH 363
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YG +VDLL RAG L EAY+ I +MP + V+W LLG ++H N+DLAE A+ +L L
Sbjct: 364 YGTIVDLLGRAGRLAEAYDMIMSMPFPADIVLWQTLLGAAKMHGNVDLAELAATKLADLG 423
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
+G +V+LSN+YA RW DV RVR MR+ VKK PG+S +DGV+H+F+ GD+ H
Sbjct: 424 SNVDGDYVLLSNVYASKSRWVDVGRVRDTMRSNDVKKVPGFSYTEIDGVMHKFINGDKEH 483
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
+ +I++ +++ + GY P TS VL DI E+EK+ L HSEKLA+ FGL++TPP
Sbjct: 484 MRWREIYRALDEIGSRICALGYEPETSNVLHDIGEEEKQYALSYHSEKLAIAFGLISTPP 543
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G IR++KNLR C DCH KLIS+ NR I++RDR RFH F+ G CSC DYW
Sbjct: 544 GETIRVIKNLRTCGDCHVVAKLISKAYNRVIIIRDRARFHRFEDGHCSCRDYW 596
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 106/231 (45%), Gaps = 22/231 (9%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G ++R+ TL+D Y KCG + AR+VF EM R V TW+A++ GLA
Sbjct: 141 QLHATLFRLGVAADVRLMTTLLDSYAKCGDVASARKVFDEMPVRDVATWNALLAGLAQGT 200
Query: 61 QAKEALT-------SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGI 113
+ AL SF ++ +PN VT + L AC +G + +G + G
Sbjct: 201 EPNLALLLFRRLAGSFRELPPRE-EPNAVTVVAALSACAQLGTLKDGLA-VHEFARTIGA 258
Query: 114 IPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV-WGALLGGCRVHKNIDLAEEAS 172
+ + ++D+ S+ G L A E ++ ++ +V + A + +H + E+A
Sbjct: 259 VDNVCVGNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSIHGH---GEDAL 315
Query: 173 RQLDQL----DPLNNGYHVVL-----SNIYAEAERWEDVARVRKLMRNLGV 214
+ D++ +P Y V+ + + + R D RV M++ G
Sbjct: 316 KLFDEMPARIEPDEITYLAVMGGCNHAGLVDDGRRVFDSMRVPPNMKHYGT 366
>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 882
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 161/344 (46%), Positives = 230/344 (66%), Gaps = 1/344 (0%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G+ +++ N LI+MY KCGCLE + RVF M R V TW+ MI ++G+ ++AL SF
Sbjct: 539 GYESELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALESF 598
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
M + GI P+ V FI L++AC H G V++G F M T Y I P IEHY C+VDLLSR
Sbjct: 599 VDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYACVVDLLSR 658
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
+ + +A EFI+ MPI+P+ +W ++L CR +++ AE SR++ +L+P + GY ++
Sbjct: 659 SQKISKAEEFIQAMPIEPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILA 718
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
SN YA +W+ V+ +RK +R+ +KK PG+S I + VH F +GD++ PQ+E I +
Sbjct: 719 SNAYAALRKWDKVSLIRKSVRDKHIKKNPGYSWIEIGKKVHVFCSGDDSAPQSEAIHKSL 778
Query: 250 EKLLDGMKLKGYIPNTSVVLLDI-EEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKN 308
E L M +GYIP++ V ++ EE+EK + + HSE+LA+ FGL+NT PGTP+++MKN
Sbjct: 779 EILYSLMAKEGYIPDSREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKN 838
Query: 309 LRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
LRVC DCH KLIS+IV REI+VRD NRFH F+ G CSC D W
Sbjct: 839 LRVCSDCHEVTKLISKIVGREILVRDANRFHLFKDGICSCKDRW 882
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 121/277 (43%), Gaps = 52/277 (18%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF ++ V N L+DMY + G L AR+VF EM R + +W+++I G + HG +EAL +
Sbjct: 136 GFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIY 195
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEG----------------------------- 100
+++ I P+ T +L A ++ V +G
Sbjct: 196 HELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKF 255
Query: 101 ------RRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE-FIRNMP-IKPNGVVW 152
RR F M + Y M+ + ++E+ + F+ N+ KP+ +
Sbjct: 256 SRPTDARRVFDEMVVRDSVT-----YNTMICGYLKLEMVEESVKMFLENLDQFKPDILTV 310
Query: 153 GALLGGCRVHKNIDLAEEASRQLDQLD-PLNNGYHVVLSNIYAEAERWEDVARVRKLMRN 211
++L C +++ LA+ + + L + +L ++YA+ D+ R + +
Sbjct: 311 TSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKC---GDMITARDVFNS 367
Query: 212 LGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQM 248
+ K T W+SI + G + +GD +A K+F+M
Sbjct: 368 MECKDTVSWNSI-ISGYIQ---SGDLM--EAMKLFKM 398
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 77/158 (48%), Gaps = 2/158 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
++ Y ++GF V N LID+Y KCG + AR VF ME + +W+++I G G
Sbjct: 329 IYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGD 388
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ F M+ + + + +T++ L+ + + G+ +S + GI +
Sbjct: 389 LMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKG-LHSNGIKSGIYIDLSVSN 447
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
++D+ ++ G + ++ + +M + V W ++ C
Sbjct: 448 ALIDMYAKCGEVGDSLKIFNSMG-TLDTVTWNTVISAC 484
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 3/176 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIH 59
R+H G + LID Y + VF + + V+ W+++I+ + +
Sbjct: 25 RIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAKNVYIWNSIIRAFSKN 84
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G +AL + K+ E + P+ TF ++ AC + + G Y E G +
Sbjct: 85 GWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGD-LVYKQILEMGFESDLYV 143
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
+VD+ SR G L A + MP++ + V W +L+ G H + A E +L
Sbjct: 144 GNALVDMYSRMGLLSRARQVFDEMPVR-DLVSWNSLISGYSSHGYYEEALEIYHEL 198
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 3/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ +SG V N L+ MY+K ARRVF EM R T++ MI G
Sbjct: 229 LHGFTLKSGVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEM 288
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+E++ F + ++ KP+ +T +L ACGH+ + ++ Y+ G + +
Sbjct: 289 VEESVKMFLENLD-QFKPDILTVTSVLCACGHLRDLSLA-KYIYNYMLRAGFVLESTVKN 346
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ ++ G + A + +M K + V W +++ G
Sbjct: 347 ILIDVYAKCGDMITARDVFNSMECK-DTVSWNSIISG 382
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 2/155 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +SG ++ V N LIDMY KCG + + ++F M TW+ +I G
Sbjct: 430 LHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGD 489
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
L +M + + P+ TF+ L C + G+ + +G +++
Sbjct: 490 FATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKE-IHCCLLRFGYESELQIGN 548
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
++++ S+ G L+ ++ M + + V W ++
Sbjct: 549 ALIEMYSKCGCLESSFRVFERMS-RRDVVTWTGMI 582
>gi|302804779|ref|XP_002984141.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
gi|300147990|gb|EFJ14651.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
Length = 487
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 157/332 (47%), Positives = 220/332 (66%), Gaps = 1/332 (0%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
+I+MY KCG L A VF M ER W+ +I G A HG ++E+L F +M + G KP+
Sbjct: 157 IINMYGKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPD 216
Query: 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFI 140
GV+ + +L C H G V++G FF +T E+G+ P +HYGCM+DLL R+G L+ A I
Sbjct: 217 GVSLLCVLSVCSHAGLVEQGWDFFLDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMI 276
Query: 141 RNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWE 200
R MP + + W L C+VH + + + A+ ++ +L+P+ Y V LSNIYA A W+
Sbjct: 277 RRMPFQATAMNWAIFLAACKVHSDTERGKRAAEKVLELEPVPAAY-VSLSNIYAAAGEWD 335
Query: 201 DVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKG 260
V RVR M+ +G++K PG SSI V+ VHEF AGD++HP+A +I+ + E L M+ G
Sbjct: 336 QVDRVRSAMKAMGLQKDPGRSSIEVNSRVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSG 395
Query: 261 YIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAAFK 320
Y+P+T +VLL++ E++KE+ L HSEKLA+ FGL++TP G+ +RI+KNLRVC DCH A K
Sbjct: 396 YVPDTKLVLLNVSEEQKERLLCFHSEKLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAK 455
Query: 321 LISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+S I REI +RD RFH FQ G CSCGDYW
Sbjct: 456 FVSRIAGREIFMRDSQRFHHFQDGHCSCGDYW 487
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 6/165 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++G N V L++MY K GCL+ A RVF + + + +W+A++ +
Sbjct: 33 IHSCVLEAGLESNTVVATALVNMYGKAGCLDEATRVFRGLGRKDLVSWTALMSAYSREDL 92
Query: 62 AKEALTSFNKMIEIGI---KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+EAL F +M G+ KP+ F LL AC + EG R + E G
Sbjct: 93 YREALQLFREMTLHGLDGTKPDRSYFAFLLQACATLSAAAEG-RLAHRRIQECGYDSSDG 151
Query: 119 HYGC-MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
G ++++ + G L+ A+E M + + V W ++ G H
Sbjct: 152 VLGLGIINMYGKCGNLRAAHEVFDGMSER-DTVAWTTIISGYAHH 195
>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 740
Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 165/353 (46%), Positives = 234/353 (66%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE--RTVFTWSAMIQGLAIH 59
VH + ++ + N V +DMY KCGCL A +VF +M E R F ++AMI G A+H
Sbjct: 388 VHCFVLRNKIKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGFAVH 447
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G +AL + KM G+ P+ TF+ + AC H+G V+EG F SM +G+ P++EH
Sbjct: 448 GYGNQALELYRKMKFKGLVPDSATFVVTMFACSHVGLVEEGLEIFKSMKEVHGVEPKLEH 507
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YGC++DLL RAG L+EA E++ +MP+KPN V+W +LLG R+H N+ + E A +L +L+
Sbjct: 508 YGCLIDLLGRAGRLKEAEEWLADMPMKPNAVLWRSLLGAARIHGNLGVGEVALTKLIELE 567
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P +G +V+LSN+YA R DV RVRKLM++ GV K PG+S + + G +HEF+ GD +H
Sbjct: 568 PETSGNYVLLSNMYASVGRVNDVKRVRKLMKHHGVNKLPGFSLVEIKGAMHEFLTGDRSH 627
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P +++I+ ++ ++ G+ TS L D+EE++KE L HSE+LA+ F L+ +P
Sbjct: 628 PFSKEIYLKIAEINSRLEEYGHKARTSEALFDLEEEDKEGVLSYHSERLAIAFALIASPS 687
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC DCHA KLIS +REI+VRDRNRFH F+ GSCSC DYW
Sbjct: 688 SLAIRIIKNLRVCGDCHAFTKLISVAYHREIIVRDRNRFHHFKDGSCSCLDYW 740
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 17/171 (9%)
Query: 20 TLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ-------------AKEAL 66
+L++ Y K G + +R +F + E + TW+ ++ A + E+L
Sbjct: 292 SLLNFYAKYGKMCVSRYIFDRINEPDLATWNVILNAYARSSSYHSYSNSFDDADFSLESL 351
Query: 67 TSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG-CMVD 125
F M IGI+PN VT + L+ AC ++G V +G F+ I G VD
Sbjct: 352 YLFRDMQVIGIRPNEVTIVALISACSNLGAVSQG--FWVHCFVLRNKIKMNRFVGTAFVD 409
Query: 126 LLSRAGFLQEAYEFIRNMPIKP-NGVVWGALLGGCRVHKNIDLAEEASRQL 175
+ S+ G L A + MP + + A++GG VH + A E R++
Sbjct: 410 MYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGFAVHGYGNQALELYRKM 460
>gi|414879360|tpg|DAA56491.1| TPA: hypothetical protein ZEAMMB73_164599 [Zea mays]
Length = 520
Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 159/351 (45%), Positives = 224/351 (63%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + G R V N+L+ MY K G L AR VF M R TW+A+I G A +G+
Sbjct: 170 VHAAAVRLGLRPFRSVENSLVSMYAKTGALRDARAVFDAMPARCTITWTALIVGYAQNGR 229
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+++L + M+ G +P+ VTFIGLL AC H G VD GR F SM YGI P +HY
Sbjct: 230 GRQSLEVYADMVRSGCRPDYVTFIGLLFACSHAGLVDAGRAHFRSMVPVYGIAPGPDHYA 289
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L EA + + + + VW +LLG CRVH+N +LAE A+ + +LDP
Sbjct: 290 CMVDLLGRAGRLDEAMDLLNRSSTELDATVWKSLLGACRVHQNAELAERAAEMVWRLDPA 349
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ +V+LSN+Y+ A RW DVAR+R LM+ GV K PG S + V+G+ H F D HP+
Sbjct: 350 DAVPYVMLSNLYSRARRWGDVARIRALMKARGVTKEPGCSWVGVNGITHLFHVEDRDHPR 409
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A +I++ E++ + ++++GY+P+T L D + +++ L HSE+LA+ FGL+ P
Sbjct: 410 AAEIYRKVEEMTERIRVEGYVPDTDWALQDEVPEWRQRGLAYHSERLAVAFGLLAVPAAA 469
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLRVC DCH A K+++++ REI++RD N FH + G CSCGDYW
Sbjct: 470 PIRVFKNLRVCGDCHTAIKMVAKVYGREIILRDANCFHHMKDGECSCGDYW 520
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 4/147 (2%)
Query: 14 NIRVCNTLIDMYVKC--GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
++ V N L+D Y + AR VF EM R V TW++++ GLA G A+ +++
Sbjct: 79 HLHVANALVDAYARLPHAGAAAARAVFDEMPRRDVVTWTSLLTGLARAGAHGAAVRAYHG 138
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M+ G++P+ L +C +D GR ++ G+ P +V + ++ G
Sbjct: 139 MVASGVQPDEFAVPAALSSCAASTALDLGRS-VHAAAVRLGLRPFRSVENSLVSMYAKTG 197
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGG 158
L++A MP + + W AL+ G
Sbjct: 198 ALRDARAVFDAMPARCT-ITWTALIVG 223
>gi|413952609|gb|AFW85258.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
gi|413952610|gb|AFW85259.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
gi|413952611|gb|AFW85260.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
Length = 630
Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 168/353 (47%), Positives = 234/353 (66%), Gaps = 7/353 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIH 59
VHE++ G N+ V N LIDMY KCG L A VF I++E+RT+ +++A IQ L+IH
Sbjct: 283 VHEFARTIGAVDNVCVGNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSIH 342
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G ++AL F++M I+P+ +T++ ++ C H G VD+GRR F SM + P ++H
Sbjct: 343 GHGEDALKLFDEM-PARIEPDEITYLAVMGGCNHAGLVDDGRRVFDSMR----VPPNMKH 397
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YG +VDLL RAG L EAY+ I +MP + V+W LLG ++H N+DLAE A+ +L L
Sbjct: 398 YGTIVDLLGRAGRLAEAYDMIMSMPFPADIVLWQTLLGAAKMHGNVDLAELAATKLADLG 457
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
+G +V+LSN+YA RW DV RVR MR+ VKK PG+S +DGV+H+F+ GD+ H
Sbjct: 458 SNVDGDYVLLSNVYASKSRWVDVGRVRDTMRSNDVKKVPGFSYTEIDGVMHKFINGDKEH 517
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
+ +I++ +++ + GY P TS VL DI E+EK+ L HSEKLA+ FGL++TPP
Sbjct: 518 MRWREIYRALDEIGSRICALGYEPETSNVLHDIGEEEKQYALSYHSEKLAIAFGLISTPP 577
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G IR++KNLR C DCH KLIS+ NR I++RDR RFH F+ G CSC DYW
Sbjct: 578 GETIRVIKNLRTCGDCHVVAKLISKAYNRVIIIRDRARFHRFEDGHCSCRDYW 630
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 106/231 (45%), Gaps = 22/231 (9%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G ++R+ TL+D Y KCG + AR+VF EM R V TW+A++ GLA
Sbjct: 175 QLHATLFRLGVAADVRLMTTLLDSYAKCGDVASARKVFDEMPVRDVATWNALLAGLAQGT 234
Query: 61 QAKEALT-------SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGI 113
+ AL SF ++ +PN VT + L AC +G + +G + G
Sbjct: 235 EPNLALLLFRRLAGSFRELPPRE-EPNAVTVVAALSACAQLGTLKDGLA-VHEFARTIGA 292
Query: 114 IPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV-WGALLGGCRVHKNIDLAEEAS 172
+ + ++D+ S+ G L A E ++ ++ +V + A + +H + E+A
Sbjct: 293 VDNVCVGNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSIHGH---GEDAL 349
Query: 173 RQLDQL----DPLNNGYHVVL-----SNIYAEAERWEDVARVRKLMRNLGV 214
+ D++ +P Y V+ + + + R D RV M++ G
Sbjct: 350 KLFDEMPARIEPDEITYLAVMGGCNHAGLVDDGRRVFDSMRVPPNMKHYGT 400
>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 684
Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 159/351 (45%), Positives = 239/351 (68%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + F ++ + L+ +Y KCG LE +R VF M + V W+ MI ++HG+
Sbjct: 334 IHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDVVAWNTMIMANSMHGK 393
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
E+L FNKM++ G++PN VTFIG+L C H DEG F SM++E+ I P +HY
Sbjct: 394 GGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEGLLVFNSMSSEHSITPDADHYS 453
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+LSRAG L+EAY+FIR MPI+P WGALLG CRV+KN++L A+ QL +++P
Sbjct: 454 CMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGALLGACRVYKNVELGTLAASQLFEIEPD 513
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V+LSNI A++W + + +RK+MR+ G+ KTPG S + V V+ FV GD+++ Q
Sbjct: 514 NAGNYVLLSNILVTAKKWVEASEIRKMMRDKGLAKTPGRSWVQVKNKVYSFVTGDKSNEQ 573
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ I++ +++ + M+L GY PNT VL +++++++E+ L HSE+LA+ FG++N+ T
Sbjct: 574 KDMIYRFLDEIDEKMRLDGYQPNTDFVLQNVDQEQREETLCSHSERLAVAFGILNSSGKT 633
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+R+ KNLR+C DCH A KLI++IV +I+VRD RFH F+ G C+C D+W
Sbjct: 634 TVRVFKNLRICGDCHNAIKLIAKIVGMQIIVRDSLRFHHFRDGYCTCNDFW 684
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 52/92 (56%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H+ + Q GF +++ + N LIDM+ KC + GAR VF +M + V +W++M G
Sbjct: 98 KIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVSWTSMTYCYVNCG 157
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACG 92
++ + F +M GI+ N +T +L AC
Sbjct: 158 MCRQGILLFREMGLNGIRANSLTVSSILPACA 189
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 76/196 (38%), Gaps = 37/196 (18%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAM--------- 52
VH + ++ N+ V + L++MY L+ AR VF M R + +W+ M
Sbjct: 198 VHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKE 257
Query: 53 --------------------------IQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIG 86
I G +GQ + AL KM + GIKPN +T +
Sbjct: 258 YERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVS 317
Query: 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIK 146
L C ++ + G+ + + I + +V L ++ G L+ + MP +
Sbjct: 318 ALPGCTNLESLRGGKE-IHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMP-R 375
Query: 147 PNGVVWGALLGGCRVH 162
+ V W ++ +H
Sbjct: 376 KDVVAWNTMIMANSMH 391
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 69/149 (46%), Gaps = 4/149 (2%)
Query: 9 SGFRRNIRVCNT--LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEAL 66
S N++ C + LI + G L+ A +F ++ E + TW+ +I G HG K+A+
Sbjct: 3 SKLPANLQPCQSIKLIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAI 62
Query: 67 TSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126
++ ++ ++P+ + + AC G + ++ + ++G + ++D+
Sbjct: 63 DIYSTLLSRNVRPDKFVLLSVAKACAASGDLVVAKK-IHDDAIQFGFNKDLVLGNALIDM 121
Query: 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGAL 155
+ F+ A +M +K + V W ++
Sbjct: 122 FGKCKFVNGARCVFDDMVVK-DVVSWTSM 149
>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g68930-like [Cucumis
sativus]
Length = 695
Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 228/352 (64%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH S +G N+ V + LIDMY KCG ++ AR VF M R V +W+AMI G A +G
Sbjct: 344 VHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGH 403
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K+AL F M++ KP+ VTFIG+L AC H W+++G+ +F S++ ++G+ P ++HY
Sbjct: 404 DKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYA 463
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMV+LL R G +++A I+NM P+ ++W LL C +I AE A+R L +LDP
Sbjct: 464 CMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPT 523
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+++LSN+YA RW+DVA VR LM++ VKK G+S I +D VH F + D THP+
Sbjct: 524 IAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPE 583
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG- 300
+E I++ L+ ++ +G+ PNT++VL D+ E EK K + HSEKLAL FGL+ P G
Sbjct: 584 SEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGI 643
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+PIRI+KN+R+C DCH K S I+ R+I++RD NRFH F G CSC D W
Sbjct: 644 SPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 79/141 (56%), Gaps = 2/141 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
+T+I Y +CG ++ ARRVF E +E+ + W+AM+ G A +G+ ++AL FN+M+ I+
Sbjct: 260 STIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIE 319
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ T ++ +C + + G+ + + G+ + ++D+ S+ GF+ +A
Sbjct: 320 PDSYTLSSVVSSCAKLASLHHGQA-VHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARS 378
Query: 139 FIRNMPIKPNGVVWGALLGGC 159
MP + N V W A++ GC
Sbjct: 379 VFNLMPTR-NVVSWNAMIVGC 398
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
F N+ + N L DMY KCG +E AR +F + ++ + +W+ MI G A +GQ ++ +
Sbjct: 185 NFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLL 244
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF 104
++M G P+ VT ++ A G VDE RR F
Sbjct: 245 HQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVF 279
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/171 (19%), Positives = 71/171 (41%), Gaps = 33/171 (19%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ----------------- 61
N L+ +Y K G L A+ +F +M +R F+W+A++ A G
Sbjct: 62 NQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSV 121
Query: 62 --------------AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM 107
+E+L F +M G +P T + +L+A + + G++ S+
Sbjct: 122 SYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSI 181
Query: 108 TTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ + + + D+ ++ G +++A ++ + K N V W ++ G
Sbjct: 182 IVR-NFLGNVFIWNALTDMYAKCGEIEQA-RWLFDCLTKKNLVSWNLMISG 230
>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
Length = 742
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 162/353 (45%), Positives = 230/353 (65%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER-TVFTWSAMIQGLAIHG 60
V E + G + V ++++Y KCG +E ARR+F + R V W+AMI A G
Sbjct: 390 VSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFG 449
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY-GIIPQIEH 119
Q+ EAL F +M G++P+ +F+ +L AC H G D+G+ +F SMTTEY + I+H
Sbjct: 450 QSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQH 509
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
+GC+ DLL R G L+EA EF+ +P+KP+ V W +LL CR H+++ A+E + +L +L+
Sbjct: 510 FGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLE 569
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P +V LSNIYAE ++W VA+VRK M GVKK G S+I + +H+F GD+ H
Sbjct: 570 PRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAH 629
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ +I + KL MK GY+P+T +VL ++E+EKE+ L+ HSE+LA+ GL++TP
Sbjct: 630 PRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSERLAIALGLISTPL 689
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GTP+R+ KNLRVC DCH A KLIS+I R+IVVRD RFH F+ G CSC DYW
Sbjct: 690 GTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 742
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 115/269 (42%), Gaps = 15/269 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE-RTVFTWSAMIQGLAIH 59
R+H+ S + +V N L++MY KCG L A+RVF +ME R V +WS M A+H
Sbjct: 79 RIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALH 138
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G EAL F M+ +GIK + +L AC V +G R +S G ++
Sbjct: 139 GNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG-RMIHSCIALSGFESELLV 197
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
++ + R G ++EA + M VV ++ VH + Q QL
Sbjct: 198 ANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRMQLR 257
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P Y +LS + EDV R L + + + ++ V + A +H
Sbjct: 258 PDKVTYVSLLSACSSA----EDVGLGRVLHKQIVNDELE--KNVIVGNALVSMYAKCGSH 311
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVV 268
+A +F D M+ + I T+++
Sbjct: 312 TEARAVF-------DKMEQRSIISWTTII 333
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 71/143 (49%), Gaps = 3/143 (2%)
Query: 24 MYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVT 83
MY C A+ F +E+R +++W+ ++ AI GQ+KE L + +M + G++P+ VT
Sbjct: 1 MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60
Query: 84 FIGLLHACGHMGWVDEGRRFFYSMT-TEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRN 142
FI L +CG + +G R + + I P++ + ++++ + G L A
Sbjct: 61 FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSN--ALLNMYKKCGSLSHAKRVFAK 118
Query: 143 MPIKPNGVVWGALLGGCRVHKNI 165
M N + W + G +H N+
Sbjct: 119 MERTRNVISWSIMAGAHALHGNV 141
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 78/163 (47%), Gaps = 8/163 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ +N+ V N L+ MY KCG AR VF +ME+R++ +W+ +I
Sbjct: 282 LHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRL 341
Query: 62 AKEALTSFNKMIEIG-------IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGII 114
EA F +M+E+ +KP+ + F+ +L+AC + +++G + G+
Sbjct: 342 VAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQG-KMVSEQAASCGLS 400
Query: 115 PQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
+V+L + G ++EA + +P+ +W A++
Sbjct: 401 SDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIA 443
>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Brachypodium distachyon]
Length = 804
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 154/352 (43%), Positives = 226/352 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + Q GF + N L+ MY +CG ++ AR VF+ M +W+AMI L HG
Sbjct: 453 QLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHG 512
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F++M+ GI P+ ++F+ +L AC H G VD+G ++F SM ++GI P +HY
Sbjct: 513 HGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHY 572
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
++DLL RAG + EA + I+ MP +P +W A+L GCR++ +++L A+ QL ++ P
Sbjct: 573 ARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVP 632
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++G +++LSN Y+ A RW D ARVRKLMR+ GVKK PG S I V VH F+ GD HP
Sbjct: 633 EHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGNKVHVFLVGDTKHP 692
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
A ++++ E + M+ GY+P+T L D+ EKE L+ HSE+LA++FGL+ P G
Sbjct: 693 DAHEVYRFLEMVGAKMRKLGYVPDTKFALQDMAPHEKEYVLFAHSERLAVSFGLLKLPAG 752
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ ++KNL++C DCH A +S V REIVVRD RFH F+ G CSCG+YW
Sbjct: 753 ATVTVLKNLKICGDCHTAMMFMSRAVGREIVVRDVRRFHHFKDGECSCGNYW 804
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 5/160 (3%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NT++ Y++ GCL+ A R+F EM ++ +W M+ G G A++AL FN+M +K
Sbjct: 370 NTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVK 429
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P T+ G + ACG +G + G++ ++ + G ++ + +R G +++A
Sbjct: 430 PCDYTYAGAVAACGELGALKHGKQ-LHAHLVQCGFEASNSAGNALLTMYARCGAVKDARL 488
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
MP + V W A++ H + EA DQ+
Sbjct: 489 VFLVMP-NVDSVSWNAMISALGQHGH---GREALELFDQM 524
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 7/200 (3%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
T++ +V+ G + AR F E++ W+AMI G G EA F +M+ I
Sbjct: 234 TTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIP 293
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRF---FYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE 135
P+ TF LL AC + G+ G+ F + ++ + +V L S++G +
Sbjct: 294 PDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAV 353
Query: 136 AYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAE 195
A + +M +K + V W +L G +D A+R ++ + +V+ + Y
Sbjct: 354 ATKIFDSMTLK-DVVSWNTILSGYIESGCLD---NAARIFKEMPYKSELSWMVMVSGYVH 409
Query: 196 AERWEDVARVRKLMRNLGVK 215
ED ++ MR+ VK
Sbjct: 410 GGLAEDALKLFNQMRSEDVK 429
>gi|302780908|ref|XP_002972228.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
gi|300159695|gb|EFJ26314.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
Length = 487
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 157/332 (47%), Positives = 220/332 (66%), Gaps = 1/332 (0%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
+I+MY KCG L A VF M ER W+ +I G A HG ++E+L F +M + G KP+
Sbjct: 157 IINMYGKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPD 216
Query: 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFI 140
GV+ + +L C H G V++G FF +T E+G+ P +HYGCM+DLL R+G L+ A I
Sbjct: 217 GVSLLCVLSVCSHAGLVEQGWDFFLDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMI 276
Query: 141 RNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWE 200
R MP + + W L C+VH + + + A+ ++ +L+P+ Y V LSNIYA A W+
Sbjct: 277 RRMPFQATAMNWAIFLAACKVHSDTERGKRAAEKVLELEPVPAAY-VSLSNIYAAAGEWD 335
Query: 201 DVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKG 260
V RVR M+ +G++K PG SSI V+ VHEF AGD++HP+A +I+ + E L M+ G
Sbjct: 336 QVDRVRSAMKAMGLQKDPGRSSIEVNSRVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSG 395
Query: 261 YIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAAFK 320
Y+P+T +VLL++ E++KE+ L HSEKLA+ FGL++TP G+ +RI+KNLRVC DCH A K
Sbjct: 396 YVPDTKLVLLNVSEEQKERLLCFHSEKLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAK 455
Query: 321 LISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+S I REI +RD RFH FQ G CSCGDYW
Sbjct: 456 FVSRIAGREIFMRDSQRFHHFQDGHCSCGDYW 487
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++G N V L++MY K GCL+ A RVF +E + + +W+A++ +
Sbjct: 33 IHSCVLEAGLESNTVVATALVNMYGKAGCLDEATRVFRGLERKDLVSWTALMSAYSREDL 92
Query: 62 AKEALTSFNKMIEIGI---KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+EAL F +M G+ KP+ F LL AC + EG R + E G
Sbjct: 93 YREALQLFREMTLHGLDGTKPDRSYFAFLLQACATLSAAAEG-RLAHRRIQECGYDSSDG 151
Query: 119 HYGC-MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
G ++++ + G L+ A+E M + + V W ++ G H
Sbjct: 152 VLGLGIINMYGKCGNLRAAHEVFDGMSER-DTVAWTTIISGYAHH 195
>gi|222629025|gb|EEE61157.1| hypothetical protein OsJ_15124 [Oryza sativa Japonica Group]
Length = 383
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 157/352 (44%), Positives = 233/352 (66%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + F V ++L+DMY CG + A +VF E + + V W+AMI +HG
Sbjct: 32 IHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGH 91
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K+A+ F +M+E G+ P+ V+F+ LL+AC H VDEG+ + M ++Y + P EHY
Sbjct: 92 GKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYA 151
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL R+G +EAY+FI++MP++P VVW ALLG CR+HKN +LA A+ +L +L+P
Sbjct: 152 CVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPD 211
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V++SN++AE +W +V +R M G++K P S I + VH F A D +H
Sbjct: 212 NPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRD 271
Query: 242 AEKIFQMWEKLLDGMKLKG-YIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++ I ++ + ++ +G Y+ +TS VL D+ E+EK L+RHSE+LA++FGL++T G
Sbjct: 272 SQAIHLKLAEITEKLRREGQYVEDTSFVLHDVSEEEKIDLLHRHSERLAISFGLISTASG 331
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TP+RI KNLRVC DCH KL+S++ REIVVRD NRFH F G+CSCGD+W
Sbjct: 332 TPLRIAKNLRVCGDCHEFTKLVSKLFEREIVVRDANRFHHFSGGTCSCGDFW 383
>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
mitochondrial [Vitis vinifera]
gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
Length = 688
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 161/351 (45%), Positives = 223/351 (63%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y ++G +++ + IDMY KCGC+ A RVF ++ E+ VF+WS MI G +HG
Sbjct: 338 VHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGL 397
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL F +M + PN VTF+ +L AC H G ++EG F SM+ +YGI P EHY
Sbjct: 398 CAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYA 457
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG + EA FI NMP +P WGALLG CR+H+ +LAEE +++L L+
Sbjct: 458 CMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRIHRRAELAEEVAKKLLPLESD 517
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+G +V+LSNIYA+ WE V + R M G+ K G++SI ++ ++ F + D +
Sbjct: 518 QSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHKIVGFTSIEIEEKLYLFSSEDRFAYK 577
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I +W L + M+ GY+P+ VL D++++ K++ L HSEKLA+ FGL+N+ G
Sbjct: 578 NTQIESLWNSLKERMRELGYVPDLRFVLHDVDDEVKQEVLCGHSEKLAIVFGLLNSGEGM 637
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KN+RVC DCH A K IS I R+I++RD RFH Q G CSCGDYW
Sbjct: 638 PIRITKNMRVCGDCHTASKFISLITRRKIIMRDVKRFHHVQDGVCSCGDYW 688
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 123/257 (47%), Gaps = 20/257 (7%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N + +L+DMY+KCG L+ A ++F E+ R V WSA+I G A +G+A E+++ F +M+
Sbjct: 249 NFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQML 308
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
+ PN VTF ++ AC +G + +GR M G+ +++Y +D+ ++ G +
Sbjct: 309 ADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRN-GVELDVKNYTSFIDMYAKCGCI 367
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASRQLDQLDPLNNGYHVVL 189
AY +P K N W ++ G +H + ++L E R ++QL P + + VL
Sbjct: 368 VTAYRVFCQIPEK-NVFSWSTMINGFGMHGLCAEALNLFYEM-RSVNQL-PNSVTFVSVL 424
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD-----GVVHE---FVAGDETHPQ 241
S E + + + R+ G+ + VD G + E F+ T P
Sbjct: 425 SACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPG 484
Query: 242 AEKIFQMWEKLLDGMKL 258
A W LL ++
Sbjct: 485 ASA----WGALLGACRI 497
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 1/142 (0%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V L+++Y + G LE A +VF E+ + W MI+G + F++M G
Sbjct: 150 VAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSG 209
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
+ + GL+ ACG++ EG+ F + I +VD+ + GFL A
Sbjct: 210 FELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFA 269
Query: 137 YEFIRNMPIKPNGVVWGALLGG 158
+ + + + VVW A++ G
Sbjct: 270 LKLFEEISYR-DVVVWSAIIAG 290
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 87/200 (43%), Gaps = 19/200 (9%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAK---EA 65
+ R++ + Y++ G L A + F + + +W+ + LA H + K +
Sbjct: 41 NALHRSLLFGPMIFGAYIQLGSLHVASKAFNHITFENLHSWNTI---LASHSKNKCFYDV 97
Query: 66 LTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125
L F +M++ G + + + AC + +G + F+S+ + + +++
Sbjct: 98 LQLFKRMLKEGKLVDSFNLVFAVKACFGLSLF-QGAKLFHSLAIKLRLEGDPYVAPALMN 156
Query: 126 LLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKN-------IDLAEEASRQLDQL 178
+ + G L+EA++ +P+K N V+WG ++ G H N +L R +L
Sbjct: 157 VYTELGSLEEAHKVFEEVPLK-NSVIWGVMIKG---HLNFSEEFGVFELFSRMRRSGFEL 212
Query: 179 DP-LNNGYHVVLSNIYAEAE 197
DP + G N+YA E
Sbjct: 213 DPFVVEGLIQACGNVYAGKE 232
>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 163/354 (46%), Positives = 226/354 (63%), Gaps = 3/354 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +++ G RN+ V N LIDMY KCG L+GA VF M R FTW++MI G +HG
Sbjct: 232 KLHRIASEKGLLRNVFVGNALIDMYAKCGSLDGALEVFNGMP-RDAFTWNSMIVGFGVHG 290
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA+ FN+M+E G++PN + F+GLL C H G V+EG FF+ M++++ + P I+HY
Sbjct: 291 FGDEAIYFFNQMLEAGVRPNSIAFLGLLCGCSHQGLVEEGVEFFHQMSSKFNVKPGIKHY 350
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GC+VD+ RAG L++A E I + P + + V+W LL ++HKN+ + E A R L QL
Sbjct: 351 GCIVDMYGRAGKLEKALEIIGDSPWQDDPVLWRILLSSSKIHKNVVIGEIAMRNLSQLGA 410
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+N G V+L+ IYA A + VAR+RKL++ G+K TPGWS I V VH FV D++HP
Sbjct: 411 VNAGDCVLLATIYAGANDEQGVARMRKLIKKQGIKTTPGWSWIEVSDQVHRFVVDDKSHP 470
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLL--DIEEKEKEKFLYRHSEKLALTFGLMNTP 298
+E I+Q E++ + GY+ + S + E+ E HSEKLA+ FGL TP
Sbjct: 471 DSEMIYQKLEEVTHKATMAGYVEDKSQFIFHGSCSEECLESSSTYHSEKLAIAFGLAKTP 530
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GT +RI+KNLRVC DCH K +S NR+I+VRDR RFH F+ G CSC DYW
Sbjct: 531 EGTSLRIVKNLRVCRDCHEFTKFVSRAFNRDIIVRDRLRFHHFKGGLCSCRDYW 584
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 3/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++G+ R++ VC L+ Y + GC+E AR VF M ER + W+AMI + G
Sbjct: 132 VHGSIIRTGYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGY 191
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL ++ M + +G T +GLL +C H+G ++ G + + + +E G++ +
Sbjct: 192 HQEALRVYDYMRNENVGVDGFTLVGLLSSCSHVGALNMGVK-LHRIASEKGLLRNVFVGN 250
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++ G L A E MP + W +++ G VH
Sbjct: 251 ALIDMYAKCGSLDGALEVFNGMP--RDAFTWNSMIVGFGVH 289
>gi|357131197|ref|XP_003567226.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Brachypodium distachyon]
Length = 648
Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 156/346 (45%), Positives = 232/346 (67%), Gaps = 4/346 (1%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GFR N+++CN LI+ Y +CGCL A+++F EM +++ +W+A+I G +HG + A+ F
Sbjct: 304 GFRTNVQLCNALINFYARCGCLPQAQQLFNEMPRKSIVSWTALITGYGMHGHGEVAINLF 363
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
M+ GI+P+ V +GLL AC H G DEGR++F +M + Y + P +EHY CMVDLL R
Sbjct: 364 QTMVSEGIRPDNVAMVGLLSACSHAGMYDEGRKYFSAMESAYQLRPTLEHYTCMVDLLGR 423
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
AG L+EA E I +MP+ +G VWGALLG C++HKN+++ EEA + +++P N GY+V++
Sbjct: 424 AGRLKEARELISSMPMPADGAVWGALLGACKIHKNVEIGEEAFEHVIEVEPTNVGYYVLM 483
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
+NIY + + + V RVR +MR G+KK PG S + G VH F+A D +HPQA++I+++
Sbjct: 484 ANIYTDTGQLDCVVRVRAMMRERGLKKEPGCSYVEHKGRVHLFMADDHSHPQAKRIYELV 543
Query: 250 EKLLDGMKLK--GYIPNTSVVLLD-IEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIM 306
KL +K K G + +++ EK + HSEKLA+ FG++NT G+ I ++
Sbjct: 544 LKLEQMVKEKTDGTVGIQGGRMIEGHSEKTAVPLIGFHSEKLAVAFGMLNT-VGSEIAVI 602
Query: 307 KNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
KNLRVC +CH+ K +S I NR +VRD +RFH F+ G+CSC DYW
Sbjct: 603 KNLRVCGNCHSFLKTVSAIANRVFLVRDASRFHRFEDGACSCKDYW 648
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 81/158 (51%), Gaps = 8/158 (5%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEME--ERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
V N LI +Y + G AR+VF EM R + +W+A++ + +G A +AL +++M
Sbjct: 204 VANCLISVYARRGAAL-ARQVFDEMPAASRDLVSWNAVLSAHSQNGLAVDALDLYSRMRG 262
Query: 75 I---GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY-GIIPQIEHYGCMVDLLSRA 130
G++P+ VT + +L +C H+G G M + G ++ +++ +R
Sbjct: 263 CDGHGVEPDAVTLVSVLSSCAHLGARSVGLGVERYMRGKLPGFRTNVQLCNALINFYARC 322
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
G L +A + MP K + V W AL+ G +H + ++A
Sbjct: 323 GCLPQAQQLFNEMPRK-SIVSWTALITGYGMHGHGEVA 359
>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
Length = 878
Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 154/336 (45%), Positives = 222/336 (66%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V + L+ MY + G +E A+ +F +R + +W++M+ G A HG +++AL F +M G
Sbjct: 543 VSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEG 602
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
I+ +GVTF+ ++ C H G V+EG+R+F SM +YGI P +EHY CMVDL SRAG L EA
Sbjct: 603 IEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEA 662
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
I M +VW LLG C+VHKN++L + A+ +L L+P ++ +V+LSNIY+ A
Sbjct: 663 MSLIEGMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAA 722
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGM 256
+W++ VRKLM VKK G S I + VH F+A D++HP +E+I+ + +
Sbjct: 723 GKWKEKDEVRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRAMTTKL 782
Query: 257 KLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCH 316
K +GY P+TS L ++ E++KE L HSE+LAL FGL+ TPPG P+ I KNLRVC DCH
Sbjct: 783 KQEGYCPDTSFALHEVAEEQKEAMLAMHSERLALAFGLIATPPGAPLHIFKNLRVCGDCH 842
Query: 317 AAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
K++S+I +REIV+RD +RFH F +G CSCGD+W
Sbjct: 843 TVIKMVSKIEDREIVMRDCSRFHHFNSGVCSCGDFW 878
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 93/197 (47%), Gaps = 3/197 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH S + G + VCN+L++MY KCG +E AR VF ME R + +W+ ++ GL ++G
Sbjct: 226 RVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNG 285
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL F+ T+ ++ C ++ + R+ +S + G
Sbjct: 286 HDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQ-LHSSVLKRGFHSYGNVM 344
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL--DQL 178
++D S+AG L A + M N V W A++ GC + ++ LA ++ D +
Sbjct: 345 TALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGV 404
Query: 179 DPLNNGYHVVLSNIYAE 195
P + Y +L+ A
Sbjct: 405 APNDFTYSTILTASVAS 421
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 2/147 (1%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
R ++ V +L+DMY+K + R+VF M +R V TW++++ G G + + F +
Sbjct: 136 RGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFR 195
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M G+ PN VTF +L G VD GRR ++ + ++G + ++++ ++ G
Sbjct: 196 MRAEGVWPNSVTFASVLSVVASQGMVDLGRR-VHAQSVKFGCCSTVFVCNSLMNMYAKCG 254
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGG 158
++EA M + + V W L+ G
Sbjct: 255 LVEEARVVFCGMETR-DMVSWNTLMAG 280
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 3/177 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ + V L+ Y K E A +F ++++ V +WSAM+ A G
Sbjct: 425 QIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAG 484
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH-MGWVDEGRRFFYSMTTEYGIIPQIEH 119
+ A F KM G+KPN T ++ AC VD GR+ F++++ ++ +
Sbjct: 485 DSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQ-FHAISIKHRCHDALCV 543
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLD 176
+V + +R G ++ A + I + V W ++L G H A + RQ++
Sbjct: 544 SSALVSMYARKGSIESA-QCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQME 599
>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 591
Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 153/354 (43%), Positives = 230/354 (64%), Gaps = 2/354 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH++ +++G + + NTL+ MY +CG ++ A +VF M ER V +W+A+I GLA++G
Sbjct: 238 QVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNG 297
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTT-EYGIIPQIEH 119
KEA+ +FN+M++ GI P T GLL AC H G V EG FF M + E+ I P + H
Sbjct: 298 FGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHH 357
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YGC+VDLL RA L +AY I++M +KP+ +W LLG CRVH +++L E L +L
Sbjct: 358 YGCVVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELK 417
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
G +V+L N Y+ +WE V +R LM+ + PG S+I + G VHEF+ D +H
Sbjct: 418 AEEAGDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSH 477
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYR-HSEKLALTFGLMNTP 298
P+ E+I++M ++ +K+ GY+ + L ++E +E++ + R HSEKLA+ FG++ TP
Sbjct: 478 PRKEEIYKMLAEINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTP 537
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PGT IR+ KNLR C DCH K +S++ +R ++VRDR+RFH F+ GSCSC D+W
Sbjct: 538 PGTTIRVTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 5/161 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H GF + + TL+D+Y C A +VF E+ +R +W+ + +
Sbjct: 134 QIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNK 193
Query: 61 QAKEALTSFNKM---IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
+ ++ L F+KM ++ +KP+GVT + L AC ++G +D G++ + E G+ +
Sbjct: 194 RTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQ-VHDFIDENGLSGAL 252
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V + SR G + +AY+ M + N V W AL+ G
Sbjct: 253 NLSNTLVSMYSRCGSMDKAYQVFYGMR-ERNVVSWTALISG 292
>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 808
Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 165/343 (48%), Positives = 224/343 (65%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G +CN LIDMY KCG ++ +R++F M R + +W+ MI G IHG KEA F
Sbjct: 466 GIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALF 525
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
M +P+ VTFI L+ AC H G V EG+R+F+ M +YGI P++EHY MVDLL+R
Sbjct: 526 LDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLAR 585
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
GFL EAY+FI+ MP+K + VWGALLG CRVHKNIDL ++ S + QL P G V+L
Sbjct: 586 GGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLL 645
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
SNI++ A R+++ A VR + + G KK+PG S I ++G +H F+ GD +H Q+ +I+Q
Sbjct: 646 SNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSLHAFIGGDRSHAQSSEIYQEL 705
Query: 250 EKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNL 309
+ +L + GY +TS VL D+EE+EKEK L HSEKLA+ FG++ I + KNL
Sbjct: 706 DNILVDINKLGYRADTSFVLQDVEEEEKEKALLYHSEKLAIAFGVLTLSEDKTIFVTKNL 765
Query: 310 RVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
RVC DCH K ++ + R I+VRD NRFH F+ G CSCGD+W
Sbjct: 766 RVCGDCHTVIKYMTLVRKRAIIVRDANRFHHFKNGQCSCGDFW 808
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 86/172 (50%), Gaps = 5/172 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SG ++ N+L+ MY K G ++ A +F +M + ++SA++ G +G
Sbjct: 356 QLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNG 415
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A EA F KM ++P+ T + L+ AC H+ + G+ S+ GI +
Sbjct: 416 KADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVR-GIASETSIC 474
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEAS 172
++D+ ++ G + + + MP + + V W ++ G +H L +EA+
Sbjct: 475 NALIDMYAKCGRIDLSRQIFDVMPAR-DIVSWNTMIAGYGIHG---LGKEAT 522
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 13/164 (7%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++ ++G ++ V L+D+Y KC A VF M R V W+AM+ G A+HG+
Sbjct: 151 VHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVVAWNAMLAGYALHGK 210
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTT------EYGII 114
+ + +++ PN T + LL G + +GR YS+ + G++
Sbjct: 211 YSDTIACL-LLMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVL 269
Query: 115 PQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ ++ G L A M ++ N V W AL+GG
Sbjct: 270 VGTA----LLDMYAKCGHLVYASRVFEAMAVR-NEVTWSALVGG 308
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 11/164 (6%)
Query: 2 VHEYSNQS----GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLA 57
VH YS ++ + + V L+DMY KCG L A RVF M R TWSA++ G
Sbjct: 251 VHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFV 310
Query: 58 IHGQAKEALTSFNKMIEIG---IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGII 114
+ G+ EA + F M+ G + P V L AC ++ + G++ +++ + G+
Sbjct: 311 LCGRMLEAFSLFKDMLAQGLCFLSPTSVA--SALRACANLSDLCLGKQ-LHALLAKSGLH 367
Query: 115 PQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ ++ + ++AG + +A M +K + V + AL+ G
Sbjct: 368 TDLTAGNSLLSMYAKAGLIDQATTLFDQMVVK-DTVSYSALVSG 410
>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 641
Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 159/352 (45%), Positives = 235/352 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH +SG + + L+ MY KCG + A RVF M + + +W+A+I G A +G
Sbjct: 290 QVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNG 349
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q +EAL F+ + GIKP+ VTF+G+L AC H G VD+G F+S+ +Y I +HY
Sbjct: 350 QPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHY 409
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C++DLLSR+G + A + I NM +KPN +W +LLGGCR+HKN+ LA A+ L +++P
Sbjct: 410 ACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEP 469
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N +V L+NIYA +++V VR++M + G+ K P S I V VH F+ GD++HP
Sbjct: 470 ENPATYVTLANIYASVGLFDEVEDVRRIMESKGITKMPASSWIEVGRRVHVFLVGDKSHP 529
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+A++I+ + +KL M +GY+ + VL D+E+++KE+ + HSE+LA+ FG++ TP G
Sbjct: 530 KADEIYALLKKLYVKMVEEGYVADIEFVLHDVEDEQKEQDIGYHSERLAVAFGIIATPEG 589
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+PI++ KNLR+C DCHAA KLIS+IV R+I+VRD NRFH F+ G CSC DYW
Sbjct: 590 SPIKVFKNLRICGDCHAAIKLISQIVQRDIIVRDSNRFHHFKDGICSCRDYW 641
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 71/161 (44%), Gaps = 6/161 (3%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEI-GI 77
+ L DMY KCG ++ ARRVF M R +W+AM++ G+ E F M+ G+
Sbjct: 206 SALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGV 265
Query: 78 KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAY 137
+PN T+ G+L AC GR+ M G ++ + S+ G + A
Sbjct: 266 RPNEFTYAGVLRACAQFAVESFGRQVHGRMAKS-GTGDSCFAESALLRMYSKCGDMGSAV 324
Query: 138 EFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
M KP+ V W A++ G + EEA R D
Sbjct: 325 RVFEAMA-KPDLVSWTAVISG---YAQNGQPEEALRYFDMF 361
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 19 NTLIDMYVKCG-CLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
NTLI + L AR +F M +R F WSA++ G HGQ + AL + +M E
Sbjct: 98 NTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRMQE 154
>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
Length = 920
Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 156/352 (44%), Positives = 227/352 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + ++G V N LI +Y KCG +E A+ +F EM R +W+ +I + HG
Sbjct: 569 QVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHG 628
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EAL F++M + G+KPN VTFIG+L AC H+G V+EG +F SM+ YG+ P +HY
Sbjct: 629 RGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHY 688
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VD+L RAG L A F+ MPI N ++W LL C+VHKNI++ E A++ L +L+P
Sbjct: 689 ACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEP 748
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+LSN YA +W + +VRK+M++ G++K PG S I V VH F GD HP
Sbjct: 749 HDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHP 808
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+++I++ +L D + GY + + E+++K+ + HSEKLA+ FGLM PP
Sbjct: 809 LSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPC 868
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P+R++KNLRVC+DCH+ K SE+ REIV+RD RFH F +GSCSCGDYW
Sbjct: 869 IPLRVIKNLRVCDDCHSWMKCTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S ++GF ++ V LIDMY K GCL+ AR++ +E+R V +W++MI G H
Sbjct: 367 QIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHD 426
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL +F +M + G+ P+ + AC + + +G + ++ G I +
Sbjct: 427 FCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQ-IHARVYVSGYAADISIW 485
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V+L +R G +EA+ R + K + + W L+ G
Sbjct: 486 NTLVNLYARCGRSEEAFSLFREIEHK-DEITWNGLISG 522
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H SG+ +I + NTL+++Y +CG E A +F E+E + TW+ +I G
Sbjct: 468 QIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSR 527
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
K+AL F KM + G K N TFI + A ++ + +G++ + + G + E
Sbjct: 528 LYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQ-VHGRAVKTGHTSETEVA 586
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++ L + G +++A M ++ N V W ++ C H
Sbjct: 587 NALISLYGKCGSIEDAKMIFSEMSLR-NEVSWNTIITSCSQH 627
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 5/171 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y ++G + +L+D+YVKCG +E A +F + V W+ M+
Sbjct: 266 QLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQIS 325
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++ F +M GI PN T+ +L C G ++ G + +S++ + G +
Sbjct: 326 DLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQ-IHSLSIKNGFESDMYVS 384
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
G ++D+ S+ G L +A + I M K + V W +++ G H D EEA
Sbjct: 385 GVLIDMYSKYGCLDKARK-ILEMLEKRDVVSWTSMIAGYVQH---DFCEEA 431
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 79/155 (50%), Gaps = 2/155 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + F V N LI +Y+ G + A RVF +M T++ +I G A G
Sbjct: 166 IHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGH 225
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ AL F++M G++P+ VT LL AC +G + +G++ +S + G+ G
Sbjct: 226 GECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQ-LHSYLLKAGMSFDYITEG 284
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
++DL + G ++ A++ I N+ + N V+W +L
Sbjct: 285 SLLDLYVKCGDIETAHD-IFNLGDRTNVVLWNLML 318
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H S G + + N LID+Y K G + AR+VF E+ R +W AM+ G A G
Sbjct: 65 IHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGL 124
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR 101
KEA +++M + P +L AC +GR
Sbjct: 125 GKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGR 164
>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
Length = 650
Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 166/353 (47%), Positives = 227/353 (64%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G + V ++LI MY KCGCL A + F E E+ WS+MI HG
Sbjct: 298 QIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHG 357
Query: 61 QAKEALTSFNKMIE-IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
Q EA+ FN M E ++ N V F+ LL+AC H G D+G F M +YG P ++H
Sbjct: 358 QGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKH 417
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y C+VDLL RAG L +A IR+MPIK + V+W LL C +HKN ++A+ +++ Q+D
Sbjct: 418 YTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQID 477
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P ++ +V+L+N++A A+RW DV+ VRK MR+ VKK G S G VH+F GD +
Sbjct: 478 PNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQ 537
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
++++I+ ++L MKLKGY P+T+ VL D++E+EKE L +HSEKLA+ F LM P
Sbjct: 538 SKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPE 597
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIRI+KNLRVC DCH AFK IS I NREI +RD +RFH F G CSCGDYW
Sbjct: 598 GAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 650
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 2/147 (1%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
++N N LI+ YV+ G L AR+VF EM +R + TW+AMI GL +E L+ F +
Sbjct: 107 KKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFRE 166
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M +G P+ T + + V G++ + T +YG+ + + + R G
Sbjct: 167 MHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQ-IHGYTIKYGLELDLVVNSSLAHMYMRNG 225
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGG 158
LQ+ IR+MP++ N V W L+ G
Sbjct: 226 KLQDGEIVIRSMPVR-NLVAWNTLIMG 251
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 89/190 (46%), Gaps = 10/190 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y+ + G ++ V ++L MY++ G L+ V M R + W+ +I G A +G
Sbjct: 197 QIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNG 256
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ L + M G +PN +TF+ +L +C + +G++ ++ + G +
Sbjct: 257 CPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQ-IHAEAIKIGASSVVAVV 315
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNID--------LAEEAS 172
++ + S+ G L +A + + V+W +++ H D +AE+ +
Sbjct: 316 SSLISMYSKCGCLGDAAKAFSERE-DEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTN 374
Query: 173 RQLDQLDPLN 182
+++++ LN
Sbjct: 375 MEINEVAFLN 384
>gi|115458888|ref|NP_001053044.1| Os04g0469400 [Oryza sativa Japonica Group]
gi|113564615|dbj|BAF14958.1| Os04g0469400, partial [Oryza sativa Japonica Group]
Length = 401
Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 157/352 (44%), Positives = 233/352 (66%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + F V ++L+DMY CG + A +VF E + + V W+AMI +HG
Sbjct: 50 IHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGH 109
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K+A+ F +M+E G+ P+ V+F+ LL+AC H VDEG+ + M ++Y + P EHY
Sbjct: 110 GKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYA 169
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL R+G +EAY+FI++MP++P VVW ALLG CR+HKN +LA A+ +L +L+P
Sbjct: 170 CVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPD 229
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V++SN++AE +W +V +R M G++K P S I + VH F A D +H
Sbjct: 230 NPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRD 289
Query: 242 AEKIFQMWEKLLDGMKLKG-YIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++ I ++ + ++ +G Y+ +TS VL D+ E+EK L+RHSE+LA++FGL++T G
Sbjct: 290 SQAIHLKLAEITEKLRREGQYVEDTSFVLHDVSEEEKIDLLHRHSERLAISFGLISTASG 349
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TP+RI KNLRVC DCH KL+S++ REIVVRD NRFH F G+CSCGD+W
Sbjct: 350 TPLRIAKNLRVCGDCHEFTKLVSKLFEREIVVRDANRFHHFSGGTCSCGDFW 401
>gi|125578382|gb|EAZ19528.1| hypothetical protein OsJ_35094 [Oryza sativa Japonica Group]
Length = 591
Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 154/351 (43%), Positives = 228/351 (64%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H Y+ + N V L++MY CG L+ A +VF +R ++AM+ GLA+HG
Sbjct: 241 AHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGH 300
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ AL+ ++M G+ +GVT + ++ AC H G VDEG +F M E+GI P+IEHYG
Sbjct: 301 GRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYG 360
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CM+D+LSRAG L A + I M I PN ++ +L+ C +H ++L E+ +L +L+P
Sbjct: 361 CMIDMLSRAGRLNNAEKLIHEMLIVPNAAIYRSLIRACGIHGKLELGEKMIAELMRLEPD 420
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G HV++SN YA RWED + RK M+++G+ K PG S + ++GV+HEF+ GD+THP
Sbjct: 421 DSGNHVLISNFYARTNRWEDAKKARKEMKSMGIDKNPGSSLVDINGVLHEFLVGDKTHPA 480
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I+ M E++ + G +TS L D+EE++K L HSE+LA+ F L+ + PG
Sbjct: 481 SKEIYTMVEEIETRLIECGRRSSTSSALFDVEEEDKADTLSYHSERLAIAFALIASNPGA 540
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVC DCH + KL+S + REIV+RDR RFH F+ G CSCGD+W
Sbjct: 541 PIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW 591
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 35 RRVFIEMEERTVFTWSAMIQGLA---------IHGQAKEALTSFNKMIEIGIKPNGVTFI 85
RRVF + + W+A++ A A L F +M+ + I+PN +T +
Sbjct: 164 RRVFDGIAHPDLPAWNALLSAYARLRARDVACATSAADAILELFVRMLSLAIEPNEITLV 223
Query: 86 GLLHACGHMGWVDEG 100
++ ACG +G V G
Sbjct: 224 AVIGACGELGAVSHG 238
>gi|215713517|dbj|BAG94654.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222635568|gb|EEE65700.1| hypothetical protein OsJ_21333 [Oryza sativa Japonica Group]
Length = 382
Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 162/342 (47%), Positives = 221/342 (64%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
+ +++ + N L+DMY KCG L+ A +F M +R V +WS MI GLA +G++ EAL F+
Sbjct: 41 YDKDLILHNALLDMYCKCGSLQDADALFGRMPQRDVISWSTMISGLAQNGRSIEALKVFD 100
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
M G +PN +T +G+L AC H G V++G +F SM +GI P+ EH CMVDLL RA
Sbjct: 101 MMKSEGPRPNHITMVGVLFACSHAGLVEDGWYYFSSMEKLFGIQPEREHCNCMVDLLGRA 160
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190
G L +A +FI M +P+ V+W LLG CR+HKN DLA A++++ +L+P + G ++LS
Sbjct: 161 GKLDDAVKFIHEMNFQPDSVIWRTLLGACRMHKNADLAAYAAKEILRLEPDDQGARILLS 220
Query: 191 NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWE 250
N YA+ +W D + K+MR+ GVKK PG S I + VH F+AGD +HP +E I Q
Sbjct: 221 NTYADLRQWADAEKSWKMMRDRGVKKDPGRSWIELGKQVHVFIAGDLSHPCSESIIQELS 280
Query: 251 KLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLR 310
+L + GY P T VL D+ ++KE L HSEKLA+ FG MN G PIRIMKNLR
Sbjct: 281 RLFSRVTNLGYTPQTEFVLQDLATEQKEDLLKYHSEKLAIAFGTMNAMEGKPIRIMKNLR 340
Query: 311 VCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+C DCHA KL+S+ + I++RD RFH FQ G CSC DYW
Sbjct: 341 ICGDCHAFAKLVSKSEGKVIIIRDPVRFHHFQDGVCSCNDYW 382
>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 565
Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 166/353 (47%), Positives = 227/353 (64%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G + V ++LI MY KCGCL A + F E E+ WS+MI HG
Sbjct: 213 QIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHG 272
Query: 61 QAKEALTSFNKMIE-IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
Q EA+ FN M E ++ N V F+ LL+AC H G D+G F M +YG P ++H
Sbjct: 273 QGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKH 332
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y C+VDLL RAG L +A IR+MPIK + V+W LL C +HKN ++A+ +++ Q+D
Sbjct: 333 YTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQID 392
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P ++ +V+L+N++A A+RW DV+ VRK MR+ VKK G S G VH+F GD +
Sbjct: 393 PNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQ 452
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
++++I+ ++L MKLKGY P+T+ VL D++E+EKE L +HSEKLA+ F LM P
Sbjct: 453 SKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPE 512
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIRI+KNLRVC DCH AFK IS I NREI +RD +RFH F G CSCGDYW
Sbjct: 513 GAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 565
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 2/147 (1%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
++N N LI+ YV+ G L AR+VF EM +R + TW+AMI GL +E L+ F +
Sbjct: 22 KKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFRE 81
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M +G P+ T + + V G++ + T +YG+ + + + R G
Sbjct: 82 MHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQ-IHGYTIKYGLELDLVVNSSLAHMYMRNG 140
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGG 158
LQ+ IR+MP++ N V W L+ G
Sbjct: 141 KLQDGEIVIRSMPVR-NLVAWNTLIMG 166
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 89/190 (46%), Gaps = 10/190 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y+ + G ++ V ++L MY++ G L+ V M R + W+ +I G A +G
Sbjct: 112 QIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNG 171
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ L + M G +PN +TF+ +L +C + +G++ ++ + G +
Sbjct: 172 CPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQ-IHAEAIKIGASSVVAVV 230
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNID--------LAEEAS 172
++ + S+ G L +A + + V+W +++ H D +AE+ +
Sbjct: 231 SSLISMYSKCGCLGDAAKAFSERE-DEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTN 289
Query: 173 RQLDQLDPLN 182
+++++ LN
Sbjct: 290 MEINEVAFLN 299
>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
Length = 625
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 163/355 (45%), Positives = 233/355 (65%), Gaps = 5/355 (1%)
Query: 2 VHEYSNQSGFRR---NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAI 58
VH + G R N+ + L+DMY KCGC++ A VF ++ + V W+AMI GLA+
Sbjct: 272 VHRFLKAEGLGRSPDNVMLETALVDMYCKCGCMDEAWWVFDGVQSQDVVLWNAMIGGLAM 331
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+G K AL F +M+++G PN TF+ +L AC H G VDEG+ F SM ++GI P+ E
Sbjct: 332 NGHGKRALELFRRMLDMGFVPNESTFVVVLCACTHTGRVDEGKEIFRSMC-DHGIEPRRE 390
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
HYGC+ DLL RAG L+EA + +MP++P+ WGAL+ C +H N+ + E ++L +L
Sbjct: 391 HYGCLADLLGRAGLLEEAEAVLLDMPMEPHASQWGALMSSCLMHNNVGVGERVGKKLIEL 450
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
+P + G +VVL N+YA WED +RK+M G KK G S I +G+VHEF +GD
Sbjct: 451 EPDDGGRYVVLFNLYAVNGLWEDAKALRKMMEERGAKKETGLSFIEWNGLVHEFRSGDTR 510
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDI-EEKEKEKFLYRHSEKLALTFGLMNT 297
HPQ +I+ + E + ++L GY+ +TS VL+D+ +E++K L HSE+LAL FG++NT
Sbjct: 511 HPQTRQIYALLEDMEQRLQLIGYVKDTSQVLMDMDDEEDKGNTLSYHSERLALAFGILNT 570
Query: 298 PPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P PIRI+KNLRVC DCH KL+S++ REI++RDR+RFH F+ G CSC D+W
Sbjct: 571 PRHMPIRIVKNLRVCRDCHVYAKLVSKLYQREIIMRDRHRFHLFRGGVCSCNDFW 625
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 5/175 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NT++ Y KCG LE AR VF+ M ER + +WSAMI G+ EAL F++M+ G +
Sbjct: 188 NTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQMMGNGFR 247
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE-YGIIP-QIEHYGCMVDLLSRAGFLQEA 136
P+ V +L AC H+G ++ GR + E G P + +VD+ + G + EA
Sbjct: 248 PDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCGCMDEA 307
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD--PLNNGYHVVL 189
+ ++ + + V+W A++GG ++ + A E R++ + P + + VVL
Sbjct: 308 W-WVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVVL 361
>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
Length = 563
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 166/353 (47%), Positives = 227/353 (64%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G + V ++LI MY KCGCL A + F E E+ WS+MI HG
Sbjct: 211 QIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHG 270
Query: 61 QAKEALTSFNKMIE-IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
Q EA+ FN M E ++ N V F+ LL+AC H G D+G F M +YG P ++H
Sbjct: 271 QGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKH 330
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y C+VDLL RAG L +A IR+MPIK + V+W LL C +HKN ++A+ +++ Q+D
Sbjct: 331 YTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQID 390
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P ++ +V+L+N++A A+RW DV+ VRK MR+ VKK G S G VH+F GD +
Sbjct: 391 PNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQ 450
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
++++I+ ++L MKLKGY P+T+ VL D++E+EKE L +HSEKLA+ F LM P
Sbjct: 451 SKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPE 510
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIRI+KNLRVC DCH AFK IS I NREI +RD +RFH F G CSCGDYW
Sbjct: 511 GAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 563
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 2/147 (1%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
++N N LI+ YV+ G L AR+VF EM +R + TW+AMI GL +E L+ F +
Sbjct: 20 KKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFRE 79
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M +G P+ T + + V G++ + T +YG+ + + + R G
Sbjct: 80 MHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQ-IHGYTIKYGLELDLVVNSSLAHMYMRNG 138
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGG 158
LQ+ IR+MP++ N V W L+ G
Sbjct: 139 KLQDGEIVIRSMPVR-NLVAWNTLIMG 164
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 89/190 (46%), Gaps = 10/190 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y+ + G ++ V ++L MY++ G L+ V M R + W+ +I G A +G
Sbjct: 110 QIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNG 169
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ L + M G +PN +TF+ +L +C + +G++ ++ + G +
Sbjct: 170 CPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQ-IHAEAIKIGASSVVAVV 228
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNID--------LAEEAS 172
++ + S+ G L +A + + V+W +++ H D +AE+ +
Sbjct: 229 SSLISMYSKCGCLGDAAKAFSERE-DEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTN 287
Query: 173 RQLDQLDPLN 182
+++++ LN
Sbjct: 288 MEINEVAFLN 297
>gi|115468046|ref|NP_001057622.1| Os06g0472300 [Oryza sativa Japonica Group]
gi|113595662|dbj|BAF19536.1| Os06g0472300, partial [Oryza sativa Japonica Group]
Length = 397
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 162/342 (47%), Positives = 221/342 (64%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
+ +++ + N L+DMY KCG L+ A +F M +R V +WS MI GLA +G++ EAL F+
Sbjct: 56 YDKDLILHNALLDMYCKCGSLQDADALFGRMPQRDVISWSTMISGLAQNGRSIEALKVFD 115
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
M G +PN +T +G+L AC H G V++G +F SM +GI P+ EH CMVDLL RA
Sbjct: 116 MMKSEGPRPNHITMVGVLFACSHAGLVEDGWYYFSSMEKLFGIQPEREHCNCMVDLLGRA 175
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190
G L +A +FI M +P+ V+W LLG CR+HKN DLA A++++ +L+P + G ++LS
Sbjct: 176 GKLDDAVKFIHEMNFQPDSVIWRTLLGACRMHKNADLAAYAAKEILRLEPDDQGARILLS 235
Query: 191 NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWE 250
N YA+ +W D + K+MR+ GVKK PG S I + VH F+AGD +HP +E I Q
Sbjct: 236 NTYADLRQWADAEKSWKMMRDRGVKKDPGRSWIELGKQVHVFIAGDLSHPCSESIIQELS 295
Query: 251 KLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLR 310
+L + GY P T VL D+ ++KE L HSEKLA+ FG MN G PIRIMKNLR
Sbjct: 296 RLFSRVTNLGYTPQTEFVLQDLATEQKEDLLKYHSEKLAIAFGTMNAMEGKPIRIMKNLR 355
Query: 311 VCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+C DCHA KL+S+ + I++RD RFH FQ G CSC DYW
Sbjct: 356 ICGDCHAFAKLVSKSEGKVIIIRDPVRFHHFQDGVCSCNDYW 397
>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 166/356 (46%), Positives = 234/356 (65%), Gaps = 4/356 (1%)
Query: 1 RVHEYSNQSGFRRN--IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAI 58
R + + +SG+ + + + + LIDMY KCG +E A VF+ M + VFT+S+MI GLA
Sbjct: 302 RAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLAT 361
Query: 59 HGQAKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
HG+A+EAL F+ M+ + IKPN VTF+G L AC H G VD+GR+ F SM +G+ P
Sbjct: 362 HGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTR 421
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
+HY CMVDLL R G LQEA E I+ M ++P+G VWGALLG CR+H N ++AE A+ L +
Sbjct: 422 DHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFE 481
Query: 178 LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWS-SITVDGVVHEFVAGD 236
L+P G +++LSN+YA A W V RVRKL++ G+KKTP S + +G +H+F G+
Sbjct: 482 LEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGN 541
Query: 237 ETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMN 296
HP + KI E+L++ + + GY P+ S V D+ + K L +H+EKLAL F L+
Sbjct: 542 LNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLT 601
Query: 297 TPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T + I IMKNLR+C DCH +L SE+ + I++RD RFH F++G CSCGD+W
Sbjct: 602 TNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 33/180 (18%)
Query: 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWS------------------------ 50
+ V NT+IDMYVKC ++ AR+VF EM ER V +W+
Sbjct: 184 VYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPT 243
Query: 51 -------AMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF 103
AM+ G A + + +EAL F++M + GI+ + VT G + AC +G R
Sbjct: 244 KDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRA 303
Query: 104 F-YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ + Y + ++D+ S+ G ++EA +M K N + +++ G H
Sbjct: 304 VQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNK-NVFTYSSMILGLATH 362
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 33/190 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEG--ARRVFIEMEERTVFTWSAMIQGLAI 58
++H + + G ++ + LI K G ARRV ++ R F W+A+I+G AI
Sbjct: 67 QIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVIRGYAI 126
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRR------------FFYS 106
G+ EA+ + M + I P TF LL ACG M ++ GR+ F Y
Sbjct: 127 EGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVYV 186
Query: 107 MTTEYGIIPQIEHYGC------------------MVDLLSRAGFLQEAYEFIRNMPIKPN 148
T + + E C ++ +R G ++ A E ++P K +
Sbjct: 187 GNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTK-D 245
Query: 149 GVVWGALLGG 158
V W A++ G
Sbjct: 246 MVAWTAMVTG 255
>gi|224118652|ref|XP_002331415.1| predicted protein [Populus trichocarpa]
gi|222873629|gb|EEF10760.1| predicted protein [Populus trichocarpa]
Length = 458
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 154/352 (43%), Positives = 233/352 (66%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+ EY +GF+ + +V +LI M+ KCG + A VF + ++ + WS+MI G AIHG
Sbjct: 107 IEEYILSNGFQSDRQVQTSLIHMFSKCGSIGKAISVFERISDKDLAAWSSMINGYAIHGM 166
Query: 62 AKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A+EAL F+KM+EI IKP+ V F +L AC H+G V++G +FF SM ++GI+P +EHY
Sbjct: 167 AEEALGLFHKMLEIKEIKPDAVVFTSILLACSHVGLVEDGLKFFKSMQKDFGIVPSVEHY 226
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL RAG + A + IR MP+K VW L C H N++L E A+R+L ++P
Sbjct: 227 MCLVDLLGRAGQFELALKTIRVMPVKLQAQVWAPFLSACTKHCNLELGELAARKLLYMNP 286
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+++N+Y +W++ A R LM + G+ K PGWS + ++G VH F+AGD +H
Sbjct: 287 GSHANYVLMANLYTSMGKWKEAAVTRSLMIDRGLVKAPGWSQVEINGSVHVFIAGDRSHT 346
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q+ I++ E++ + GY+P T V+ D+E +EKE+ L HSE+LA+ FGL++T G
Sbjct: 347 QSIDIYKKLEEINLKLAEAGYVPETDTVIHDLEREEKEEALKVHSERLAIAFGLISTEAG 406
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ +RIMKN R C DCH+A K IS+I R ++VRD +RFH F++G C+C D+W
Sbjct: 407 STLRIMKNHRTCVDCHSALKFISKITGRHLIVRDGSRFHHFESGKCTCKDFW 458
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 7/154 (4%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N L+ MY KCG L AR+VF +TVF W+++I G G EAL F K+++ IK
Sbjct: 23 NLLLGMYAKCGDLISARKVFDMALVKTVFLWTSIIGGYTHMGYPAEALLLFKKLLKTAIK 82
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRF-FYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAY 137
PNG T +L AC +G +D G+ Y ++ + Q++ ++ + S+ G + +A
Sbjct: 83 PNGATLATILSACADLGSLDMGKEIEEYILSNGFQSDRQVQ--TSLIHMFSKCGSIGKAI 140
Query: 138 EFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
+ K + W +++ G +H +AEEA
Sbjct: 141 SVFERISDK-DLAAWSSMINGYAIH---GMAEEA 170
>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
lyrata]
gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
lyrata]
Length = 684
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 166/353 (47%), Positives = 222/353 (62%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ ++ RNI V + L+DMY KCGC+E + + F EM E+ + T +++I G A GQ
Sbjct: 332 IHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQ 391
Query: 62 AKEALTSFNKMIE--IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
AL F M G PN +TF+ LL AC G V+ G + F SM + YGI P EH
Sbjct: 392 VDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGMKIFDSMKSTYGIEPGAEH 451
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y C+VD+L RAG +++A+EFI+ MPIKP VWGAL CR+H L A+ L +LD
Sbjct: 452 YSCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWGALQNACRMHGKPHLGILAAENLFKLD 511
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P ++G HV+LSN +A A RW + VR+ M+ +G+KK G+S ITV VH F A D +H
Sbjct: 512 PKDSGNHVLLSNTFAAAGRWAEANTVREEMKGVGIKKGAGYSWITVKNQVHAFQAKDRSH 571
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
++I M KL + M+ GY P+ + L D+EE+EK + HSEKLAL FGL+ P
Sbjct: 572 KMNKEIQTMLTKLRNKMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLVALPL 631
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLR+C DCH+ FK +S V REI+VRD NRFH F+ G CSC DYW
Sbjct: 632 SVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G ++ V + DMY K + AR++F E+ ER + TW+A I G
Sbjct: 129 QIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDG 188
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ KEA+ +F + IG +PN +TF G L+AC +D G + + + G + Y
Sbjct: 189 RPKEAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQ-MHGLVFRSGFDTDVSVY 247
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D + ++ + M +K N V W +L+
Sbjct: 248 NGLIDFYGKCKQIRSSEIIFAEMGMK-NAVSWCSLVAA 284
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SGF ++ V N LID Y KC + + +F EM + +W +++ +
Sbjct: 230 QMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNH 289
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ ++A + + + ++ + +L AC M ++ GR ++ + + I
Sbjct: 290 EDEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRS-IHAHAVKACVERNIFVG 348
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
+VD+ + G ++++ + MP K N V +L+GG +D+A
Sbjct: 349 SALVDMYGKCGCIEDSEQAFDEMPEK-NLVTLNSLIGGYAHQGQVDMA 395
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
+ N LI+MY K E AR V R V +W++++ GLA +G AL F +M G
Sbjct: 44 LANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLVSGLAQNGHFSTALFEFFEMRREG 103
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMV-DLLSRAGFLQE 135
+ PN TF + A + G++ +++ + G I + GC D+ + +
Sbjct: 104 VAPNDFTFPCVFKAVASLRLPVTGKQ-IHALAVKCGRILDV-FVGCSAFDMYCKTRLRDD 161
Query: 136 AYEFIRNMPIKPNGVVWGALL 156
A + +P + N W A +
Sbjct: 162 ARKLFDEIPER-NLETWNAYI 181
>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
gi|194705708|gb|ACF86938.1| unknown [Zea mays]
gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
Length = 635
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 155/334 (46%), Positives = 226/334 (67%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
+ L+ MY K G + A RVF M + + +W+AMI G A +GQ EAL F+ ++ G +
Sbjct: 302 SALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSSGFR 361
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ VTF+G+L AC H G VD+G F+S+ +YGI +HY C++DLLSR+G + A +
Sbjct: 362 PDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSRSGLFERAED 421
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAER 198
I MP+KPN +W +LLGGCR+HKN+ LA A+ L +++P N +V L+NIYA
Sbjct: 422 MINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEPENPATYVTLANIYASVGL 481
Query: 199 WEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKL 258
+++V +R+ M G+ K P S I V VH F+ GD++HPQAE+I+ + +KL M+
Sbjct: 482 FDEVENMRRTMELRGITKMPASSWIEVGTRVHVFLVGDKSHPQAEEIYALLKKLYVKMRE 541
Query: 259 KGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAA 318
+GY+ +T VL D+E+++K++ + HSE+LA+ FG++ TP G+PI++ KNLR+C DCH
Sbjct: 542 EGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGSPIKVFKNLRICGDCHTT 601
Query: 319 FKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
KLIS+IV REI+VRD NRFH F+ GSCSC DYW
Sbjct: 602 IKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G + V + L DMY K G L+ AR VF M R V +W+AM+ G+
Sbjct: 184 LHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFDAGR 243
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
E F +M+ GI PN T+ G+L AC G++ M
Sbjct: 244 DGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSR-TGDSCFAGS 302
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V + S+ G + A R MP KP+ V W A++ G
Sbjct: 303 ALVHMYSKYGDMGTAMRVFRGMP-KPDLVSWTAMISG 338
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 11/132 (8%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNG------VTF 84
L AR +F M R F+WSA++ HGQ + AL + +M+ +P G T
Sbjct: 109 LASARALFDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLR---EPGGSGADNEFTA 165
Query: 85 IGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP 144
L A GR + GI + + D+ ++ G L +A MP
Sbjct: 166 SSALAAATAARCARAGRE-LHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMP 224
Query: 145 IKPNGVVWGALL 156
++ + V W A+L
Sbjct: 225 VR-DVVSWTAML 235
>gi|77553572|gb|ABA96368.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 605
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 154/351 (43%), Positives = 228/351 (64%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H Y+ + N V L++MY CG L+ A +VF +R ++AM+ GLA+HG
Sbjct: 255 AHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGH 314
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ AL+ ++M G+ +GVT + ++ AC H G VDEG +F M E+GI P+IEHYG
Sbjct: 315 GRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYG 374
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CM+D+LSRAG L A + I M I PN ++ +L+ C +H ++L E+ +L +L+P
Sbjct: 375 CMIDMLSRAGRLNNAEKLIHEMLIVPNAAIYRSLIRACGIHGKLELGEKMIAELMRLEPD 434
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G HV++SN YA RWED + RK M+++G+ K PG S + ++GV+HEF+ GD+THP
Sbjct: 435 DSGNHVLISNFYARTNRWEDAKKARKEMKSMGIDKNPGSSLVDINGVLHEFLVGDKTHPA 494
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I+ M E++ + G +TS L D+EE++K L HSE+LA+ F L+ + PG
Sbjct: 495 SKEIYTMVEEIETRLIECGRRSSTSSALFDVEEEDKADTLSYHSERLAIAFALIASNPGA 554
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVC DCH + KL+S + REIV+RDR RFH F+ G CSCGD+W
Sbjct: 555 PIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW 605
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 20 TLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLA---------IHGQAKEALTSFN 70
L+ ++ +CG + RRVF + + W+A++ A A L F
Sbjct: 163 ALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLRARDVACATSAADAILELFV 222
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEG 100
+M+ + I+PN +T + ++ ACG +G V G
Sbjct: 223 RMLSLAIEPNEITLVAVIGACGELGAVSHG 252
>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 878
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 159/353 (45%), Positives = 221/353 (62%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ + +I V + L+DMY KCGCL +R VF + R V TW+ +I +HG
Sbjct: 526 IHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGL 585
Query: 62 AKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA+ F++M G PN VTFI L AC H G VD G F+ M ++G+ P + +
Sbjct: 586 GDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLH 645
Query: 121 GCMVDLLSRAGFLQEAYEFIRNM-PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
C+VD+L RAG L EAY I +M P + W +LLG CR+H+N++L E A+ +L +L+
Sbjct: 646 ACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFELE 705
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P ++V+L NIY+ A W+ VR MR GV K PG S I +DG +H F+AG+ +H
Sbjct: 706 PGEASHYVLLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIELDGAIHRFMAGESSH 765
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P + ++ + L + M+ +GY P+TS VL D++E EK L HSEKLA+ FGL+ PP
Sbjct: 766 PASAEVHAHMDALWERMRREGYAPDTSCVLHDVDEDEKAAMLRYHSEKLAIAFGLLRAPP 825
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G IR+ KNLRVC DCH A K +S++V R+IV+RD RFH F+ GSCSCGDYW
Sbjct: 826 GAAIRVAKNLRVCNDCHEAAKFMSKMVGRDIVLRDVRRFHHFRDGSCSCGDYW 878
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 122/310 (39%), Gaps = 35/310 (11%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + G N V N L+DMY + G ++ ARR+F ++ R V +W+ +I G + G
Sbjct: 409 MHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGH 468
Query: 62 AKEALTSFNKM------------IEIG----IKPNGVTFIGLLHACGHMGWVDEGRRFFY 105
A EA +M E G PN +T + LL C + G+ +
Sbjct: 469 AAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKE-IH 527
Query: 106 SMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNI 165
+ + I +VD+ ++ G L + +P + N + W L+ +H
Sbjct: 528 GYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLP-RRNVITWNVLIMAYGMHG-- 584
Query: 166 DLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWED--VARVRKLM----RNLGVKKTPG 219
L +EA D++ ++ I A A V R +L R+ GVK TP
Sbjct: 585 -LGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPD 643
Query: 220 WSSITVD-----GVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVV---LLD 271
+ VD G + E + + E+ W LL +L + V L +
Sbjct: 644 LHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFE 703
Query: 272 IEEKEKEKFL 281
+E E ++
Sbjct: 704 LEPGEASHYV 713
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 71/154 (46%), Gaps = 9/154 (5%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEE--RTVFTWSAMIQGLAIHGQAKEALTSFNK 71
N V + L+DMY + ARRVF + E R + W+AMI G A G +EAL F++
Sbjct: 317 NSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSR 376
Query: 72 M-IEIGIKPNGVTFIGLLHACGHM-GWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
M E G P+ T G+L AC G+ G+ + + G+ ++D+ +R
Sbjct: 377 MEAEAGCAPSETTMSGVLPACARSEGFA--GKEAMHGYVVKRGMAGNRFVQNALMDMYAR 434
Query: 130 AGFLQEAYEFIRNMPIKPNGVV-WGALLGGCRVH 162
G + A I P VV W L+ GC V
Sbjct: 435 LGEMDVARRIFAM--IDPRDVVSWNTLITGCVVQ 466
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 2 VHEYSNQSGFRRNIR---VCNTLIDMYVKCGCLEGARRVFIEMEER------TVFTWSAM 52
H ++ + GF R N L+ MY + G ++ A+ +F V TW+ M
Sbjct: 194 AHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTM 253
Query: 53 IQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR 101
I L G+ EA+ M+ +G++P+GVTF L AC + + GR
Sbjct: 254 ISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGR 302
>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
Length = 830
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 156/348 (44%), Positives = 223/348 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + Q GF + N L+ MY KCG + AR VF+ M +W+AMI L HG
Sbjct: 455 QLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHG 514
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F++M+ GI P+ ++F+ +L AC H G VDEG +F SM ++GI P +HY
Sbjct: 515 HGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHY 574
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
++DLL R+G + EA + I+ MP +P +W A+L GCR + +++ A+ QL ++ P
Sbjct: 575 ARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIP 634
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++G +++LSN Y+ A RW D ARVRKLMR+ GVKK PG S I V +H F+ GD HP
Sbjct: 635 QHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHP 694
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+A++++Q E + M+ GY+P+T VL D+E EKE L+ HSEKLA+ FGL+ PPG
Sbjct: 695 EAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPG 754
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSC 348
+ ++KNLR+C DCH A +S+ V REIVVRD RFH F+ G CSC
Sbjct: 755 ATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSC 802
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 107/258 (41%), Gaps = 16/258 (6%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+++ NT++ Y+ GCL+ A VF M + +W M+ G G +++AL FN+M
Sbjct: 366 KDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQM 425
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+KP T+ G + ACG +G + GR+ ++ + G ++ + ++ G
Sbjct: 426 RAEDVKPCDYTYAGAIAACGELGALKHGRQ-LHAHLVQCGFEASNSAGNALLTMYAKCGA 484
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL-----DPLNNGYHV 187
+ +A MP + V W A++ H + EA DQ+ DP +
Sbjct: 485 VNDARLVFLVMP-NLDSVSWNAMISALGQHGH---GREALELFDQMVAEGIDPDRISFLT 540
Query: 188 VLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD-----GVVHEFVAGDETHPQA 242
+L+ E + R+ G+ + +D G + E +T P
Sbjct: 541 ILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMP-F 599
Query: 243 EKIFQMWEKLLDGMKLKG 260
E +WE +L G + G
Sbjct: 600 EPTPSIWEAILSGCRTNG 617
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 9/201 (4%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
T++ YV+ G + AR VF E++ + W+AMI G G +A F +M+ +
Sbjct: 236 TTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVP 295
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMT-TEYGIIPQ--IEHYGCMVDLLSRAGFLQE 135
+ TF +L AC + G+ G+ + + +P+ + +V L S+ G +
Sbjct: 296 LDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVI 355
Query: 136 AYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYH-VVLSNIYA 194
A M +K + V W +L G +D A E + + P N +V+ + Y
Sbjct: 356 AKRIFDTMNLK-DVVSWNTILSGYIDSGCLDKAVEVFKVM----PYKNDLSWMVMVSGYV 410
Query: 195 EAERWEDVARVRKLMRNLGVK 215
ED ++ MR VK
Sbjct: 411 HGGLSEDALKLFNQMRAEDVK 431
>gi|77554579|gb|ABA97375.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 794
Score = 334 bits (856), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 166/352 (47%), Positives = 236/352 (67%), Gaps = 7/352 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIH 59
VHE++ + G RN+RVCN+LIDMY KCG L A VF I+ E++T+ +++A IQ ++H
Sbjct: 240 VHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQTLVSYNAAIQAHSMH 299
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G +AL F++M I+P+GVT++ +L C H G VD+G R F SM + P ++H
Sbjct: 300 GHGGDALRLFDEM-PTRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMR----VAPNMKH 354
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YG +VDLL RAG L EAY+ + +MP + V+W LLG ++H ++LAE A+ +L +L
Sbjct: 355 YGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELG 414
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
+G +V+LSN+YA RW DV RVR MR+ V+K PG+S +DGV+H+F+ GD+ H
Sbjct: 415 SNVDGDYVLLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEH 474
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ ++I++ E ++ + GY P TS VL DI E+EK+ L HSEKLA+ FGL+ TPP
Sbjct: 475 PRWQEIYRALEDIVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEKLAIAFGLIATPP 534
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDY 351
G +R++KNLR+C DCH KLIS+ R IV+RDR RFH F+ G CSC DY
Sbjct: 535 GETLRVIKNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRDY 586
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 119/281 (42%), Gaps = 31/281 (11%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G ++R+ TL+D Y KCG L AR+VF EM R V TW++++ GLA
Sbjct: 132 QLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGT 191
Query: 61 QAKEALTSFNKM------IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGII 114
+ AL F+++ + +PN VT + L AC +G + +G + + +G+
Sbjct: 192 EPNLALALFHRLANSFQELPSREEPNEVTIVAALSACAQIGLLKDG-MYVHEFAKRFGLD 250
Query: 115 PQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQ 174
+ ++D+ S+ G L A + + IKP + + H +A R
Sbjct: 251 RNVRVCNSLIDMYSKCGSLSRALDVFHS--IKPEDQTLVSYNAAIQAHSMHGHGGDALRL 308
Query: 175 LDQL----DPLNNGYHVVL-----SNIYAEAERWEDVARVRKLMRNLG----VKKTPGWS 221
D++ +P Y VL S + + R + RV M++ G + G
Sbjct: 309 FDEMPTRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMRVAPNMKHYGTIVDLLGRAGRL 368
Query: 222 SITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYI 262
+ D V+ D +W+ LL K+ G +
Sbjct: 369 TEAYDTVISMPFPAD---------IVLWQTLLGAAKMHGVV 400
>gi|449521367|ref|XP_004167701.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like, partial [Cucumis sativus]
Length = 390
Score = 334 bits (856), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 164/352 (46%), Positives = 228/352 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + +SG + N+ V N LI MY K G + A+ VF M + TW+A+I G + HG
Sbjct: 39 QLHARAEKSGLKGNVMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSHHG 98
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
KEAL+ F M+ G +PN VTFIG++ AC H+ VDEG +F + ++ I+P +EHY
Sbjct: 99 LGKEALSMFQDMMATGERPNYVTFIGVILACAHLKLVDEGFYYFNHLMKQFRIVPGLEHY 158
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+V LLSR+G L EA F+R+ I + V W LL C VHK+ D ++ + L QL+P
Sbjct: 159 TCIVGLLSRSGRLDEAENFMRSHQINWDVVSWRTLLNACYVHKHYDKGKKIAEYLLQLEP 218
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ G +++LSN++A RW+ V +RKLMR VKK PG S + + V H F + D HP
Sbjct: 219 RDVGTYILLSNMHARVRRWDHVVEIRKLMRERNVKKEPGVSWLEIRNVAHVFTSEDIKHP 278
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+A I++ + LL ++ GY+P+ VL DIE+++K L HSEKLA+ +GLM TP G
Sbjct: 279 EANLIYENVKDLLSKIRPLGYVPDIDNVLHDIEDEQKVDNLSYHSEKLAVAYGLMKTPSG 338
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR++KNLR+C+DCH A KLIS++ NR IVVRD NRFH FQ G CSCGDYW
Sbjct: 339 APIRVIKNLRMCDDCHTAIKLISKVANRVIVVRDANRFHHFQNGYCSCGDYW 390
>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
Length = 874
Score = 333 bits (855), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 159/352 (45%), Positives = 232/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H S + + I V + L+ MY + G ++ A+ VF +R + +W++MI G A HG
Sbjct: 523 QFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHG 582
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +A+ +F +M GI+ +GVTF+ ++ C H G V EG+++F SM ++ I P +EHY
Sbjct: 583 YSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHY 642
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDL SRAG L E IR+MP +VW LLG CRVHKN++L + ++ +L L+P
Sbjct: 643 ACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEP 702
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+LSNIYA A +W++ VRKLM VKK G S I + VH F+A D++HP
Sbjct: 703 HDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHP 762
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+++I++ + ++ +K GY PNTS VL DI E +KE L HSE+LAL FGL+ TPPG
Sbjct: 763 MSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPG 822
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TP++I+KNLRVC DCH K++S I +REI++RD +RFH F G+CSCGD+W
Sbjct: 823 TPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 1/168 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH S + G R ++ VCN+L++MY KCG +E A+ VF ME R + +W+ ++ GL ++
Sbjct: 222 RVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNE 281
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL F++ K T+ ++ C ++ + R+ +S ++G
Sbjct: 282 CELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQ-LHSCVLKHGFHLTGNVM 340
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
+ D S+ G L +A N V W A++ GC + +I LA
Sbjct: 341 TALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLA 388
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
R + +L+DMY+KCG + VF M ++ V TW++++ G A E + F +
Sbjct: 132 RGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFR 191
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M GI PN TF +L A G +D G+R ++ + ++G + ++++ ++ G
Sbjct: 192 MRAEGIWPNPFTFASVLSAVASQGALDLGQR-VHAQSVKFGCRSSVFVCNSLMNMYAKCG 250
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHK 163
+++A M + + V W L+ G ++++
Sbjct: 251 LVEDAKSVFNWMETR-DMVSWNTLMAGLQLNE 281
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 3/177 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ ++ V L+ Y K G E A +F +E++ V WSAM+ A G
Sbjct: 421 QIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAG 480
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACG-HMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+ A FNKM GIKPN T ++ AC VD+GR+ F++++ +Y I
Sbjct: 481 DCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQ-FHAISIKYRYHDAICV 539
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLD 176
+V + SR G + A + + + V W +++ G H A E RQ++
Sbjct: 540 SSALVSMYSRKGNIDSA-QIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQME 595
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF-IEMEERTVFTWSAMIQGLAIH 59
++H + GF V L D Y KCG L A +F + R V +W+A+I G +
Sbjct: 323 QLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQN 382
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90
G A+ F++M E + PN T+ +L A
Sbjct: 383 GDIPLAVVLFSRMREDRVMPNEFTYSAMLKA 413
>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
Length = 874
Score = 333 bits (855), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 159/352 (45%), Positives = 232/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H S + + I V + L+ MY + G ++ A+ VF +R + +W++MI G A HG
Sbjct: 523 QFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHG 582
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +A+ +F +M GI+ +GVTF+ ++ C H G V EG+++F SM ++ I P +EHY
Sbjct: 583 YSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHY 642
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDL SRAG L E IR+MP +VW LLG CRVHKN++L + ++ +L L+P
Sbjct: 643 ACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEP 702
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+LSNIYA A +W++ VRKLM VKK G S I + VH F+A D++HP
Sbjct: 703 HDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHP 762
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+++I++ + ++ +K GY PNTS VL DI E +KE L HSE+LAL FGL+ TPPG
Sbjct: 763 MSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPG 822
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TP++I+KNLRVC DCH K++S I +REI++RD +RFH F G+CSCGD+W
Sbjct: 823 TPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 1/168 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH S + G R ++ VCN+L++MY KCG +E A+ VF ME R + +W+ ++ GL ++
Sbjct: 222 RVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNE 281
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL F++ K T+ ++ C ++ + R+ +S ++G
Sbjct: 282 CELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQ-LHSCVLKHGFHLTGNVM 340
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
+ D S+ G L +A N V W A++ GC + +I LA
Sbjct: 341 TALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLA 388
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
R + +L+DMY+KCG + VF M ++ V TW++++ G A E + F +
Sbjct: 132 RGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFR 191
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M GI PN TF +L A G +D G+R ++ + ++G + ++++ ++ G
Sbjct: 192 MRAEGIWPNPFTFASVLSAVASQGALDLGQR-VHAQSVKFGCRSSVFVCNSLMNMYAKCG 250
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHK 163
+++A M + + V W L+ G ++++
Sbjct: 251 LVEDAKSVFNWMETR-DMVSWNTLMAGLQLNE 281
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 3/177 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ ++ V L+ Y K G E A +F +E++ V WSAM+ A G
Sbjct: 421 QIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAG 480
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACG-HMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+ A FNKM GIKPN T ++ AC VD+GR+ F++++ +Y I
Sbjct: 481 DCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQ-FHAISIKYRYHDAICV 539
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLD 176
+V + SR G + A + + + V W +++ G H A E RQ++
Sbjct: 540 SSALVSMYSRKGNIDSA-QIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQME 595
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF-IEMEERTVFTWSAMIQGLAIH 59
++H + GF V L D Y KCG L A +F + R V +W+A+I G +
Sbjct: 323 QLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQN 382
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90
G A+ F++M E + PN T+ +L A
Sbjct: 383 GDIPLAVVLFSRMREDRVMPNEFTYSAMLKA 413
>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
Length = 939
Score = 333 bits (855), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 157/352 (44%), Positives = 233/352 (66%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + F V ++L+DMY CG + A +VF E + + V W+AMI +HG
Sbjct: 588 IHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGH 647
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K+A+ F +M+E G+ P+ V+F+ LL+AC H VDEG+ + M ++Y + P EHY
Sbjct: 648 GKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYA 707
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL R+G +EAY+FI++MP++P VVW ALLG CR+HKN +LA A+ +L +L+P
Sbjct: 708 CVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPD 767
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V++SN++AE +W +V +R M G++K P S I + VH F A D +H
Sbjct: 768 NPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRD 827
Query: 242 AEKIFQMWEKLLDGMKLKG-YIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++ I ++ + ++ +G Y+ +TS VL D+ E+EK L+RHSE+LA++FGL++T G
Sbjct: 828 SQAIHLKLAEITEKLRREGQYVEDTSFVLHDVSEEEKIDLLHRHSERLAISFGLISTASG 887
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TP+RI KNLRVC DCH KL+S++ REIVVRD NRFH F G+CSCGD+W
Sbjct: 888 TPLRIAKNLRVCGDCHEFTKLVSKLFEREIVVRDANRFHHFSGGTCSCGDFW 939
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 11/168 (6%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE-RTVFTWSAMIQGLAIHG 60
VH + +SG R+ V N L+ MY KCG L+ A RVF M + R V +W++ I G +G
Sbjct: 185 VHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNG 244
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMT---TEYGIIPQI 117
EAL F +M G N T +G+L C + ++ GR ++ TE+ I
Sbjct: 245 MFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNI---- 300
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNI 165
++ + +R G++ A R + K + + W ++L C V +
Sbjct: 301 -QCNALLVMYARCGWVDSALRVFREIGDK-DYISWNSML-SCYVQNRL 345
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 86/163 (52%), Gaps = 5/163 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y+ ++G ++ + N +ID+Y +CG + A +F ++++ + TW++M+ A +G
Sbjct: 487 QVHSYAIRNGLL-DLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENG 545
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEH 119
EA+ F KM+ GI+P+ V +G+L A + + +G+ + + ++ + +
Sbjct: 546 LLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAV-- 603
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ S G + A + K + V+W A++ +H
Sbjct: 604 VSSLVDMYSGCGSMNYALKVFDEAKCK-DVVLWTAMINATGMH 645
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 89/187 (47%), Gaps = 7/187 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G NI+ CN L+ MY +CG ++ A RVF E+ ++ +W++M+ +
Sbjct: 287 LHAALLKCGTEFNIQ-CNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRL 345
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ F +M++ G P+ + LL A GH+G + GR ++ + + ++
Sbjct: 346 YAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGRE-VHAYAVKQRLDSDLQIAN 404
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG----GCRVHKNIDLAEEASRQLDQ 177
++D+ + ++ + M IK + V W ++ R + I A ++ +
Sbjct: 405 TLMDMYIKCYSVECSARVFDRMRIKDH-VSWTTIIACYAQSSRYSEAIGKFRTAQKEGIK 463
Query: 178 LDPLNNG 184
+DP+ G
Sbjct: 464 VDPMMMG 470
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 9/149 (6%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE-- 74
+ L+ MY KCG L A R+F M RTVF+W+A+I G A EA+ + M
Sbjct: 95 LATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASE 154
Query: 75 --IGIKPNGVTFIGLLHACGHMGWVDEGR--RFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
G P+G T +L ACG G +GR + + + G+ +V + ++
Sbjct: 155 PVAGAAPDGCTLASVLKACGAEG---DGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKC 211
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
G L A M + W + + GC
Sbjct: 212 GLLDSALRVFEWMRDGRDVASWNSAISGC 240
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y+ + ++++ NTL+DMY+KC +E + RVF M + +W+ +I A +
Sbjct: 387 VHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSR 446
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHAC 91
EA+ F + GIK + + +L AC
Sbjct: 447 YSEAIGKFRTAQKEGIKVDPMMMGSILEAC 476
>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At2g01510-like [Cucumis
sativus]
Length = 816
Score = 333 bits (855), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 157/353 (44%), Positives = 230/353 (65%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SGF N+ + L+D Y KCGC+ A + F EM ER +W+A+I A +G
Sbjct: 464 QLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNG 523
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
L SF +MI+ G KP+ V+F+ +L AC H G+V+E F SMT Y + P+ EHY
Sbjct: 524 NVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHY 583
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
MVD+L R G EA + + MP +P+ ++W ++L CR+HKN +LA++A+ +L ++
Sbjct: 584 TSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMED 643
Query: 181 LNNGY-HVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
L + ++ +SNIYA A +W++VA+V+K MR+ GV+K P +S + + H F A D++H
Sbjct: 644 LRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSH 703
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ +KI + L M+ KGY P+T+ L D++E K + L HSE+ A+ F LMNTP
Sbjct: 704 PEMKKILRKINALSKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPD 763
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G+PI +MKNLR C DCHAA K+IS+IV REI+VRD +RFH F+ G CSCGDYW
Sbjct: 764 GSPIVVMKNLRACTDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 81/162 (50%), Gaps = 2/162 (1%)
Query: 16 RVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEI 75
RV N L+DMY KC + A+++F + ++ W+AMI G+ +E + F+ M
Sbjct: 378 RVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRT 437
Query: 76 GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE 135
G+ + TF +L AC ++ + GR+ +S+ G + + ++D ++ G + +
Sbjct: 438 GVPADQATFASILRACANLASISLGRQ-LHSLLIRSGFMSNVYSGSALLDTYAKCGCMTD 496
Query: 136 AYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
A + MP + N V W AL+ + N+D + +Q+ Q
Sbjct: 497 AIKSFGEMPER-NSVSWNALISAYAQNGNVDGTLNSFQQMIQ 537
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 125/301 (41%), Gaps = 57/301 (18%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G+ N+ VCN+L+D Y K CL A ++F M + T+++++ G + G
Sbjct: 161 QIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEG 220
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ F ++ GIKP+ TF LL A +G D T++G
Sbjct: 221 LNEEAIELFLELHNSGIKPSDFTFAALLSAA--VGLDD----------TKFG-------- 260
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
Q+ + F+ N V ALL H +D + ++ +LD
Sbjct: 261 -------------QQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDG 307
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKL-MRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
++ Y+VV+++ + E RKL ++ P + +++ G + H
Sbjct: 308 IS--YNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIH 365
Query: 240 PQA------------EKIFQMW---------EKLLDGMKLKGYIPNTSVVLLDIEEKEKE 278
QA + M+ +K+ D + K +P T+++ +++ + E
Sbjct: 366 CQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHE 425
Query: 279 K 279
+
Sbjct: 426 E 426
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 15/164 (9%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+N N +I ++K G L AR +F M ERT +W+ +I G Q+KEA + M
Sbjct: 72 KNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADM 131
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCM-----VDLL 127
GI+P+ VT + LL G + E + + T +I Y M VD
Sbjct: 132 RRGGIEPDYVTLVTLLSGFGEL----ETKNVIVQIHTH--VIKLGYEYNLMVCNSLVDAY 185
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
+ L A + ++M + + V + +L+ G + N L EEA
Sbjct: 186 CKTHCLYLASQLFKHM-LNKDTVTFNSLMTG---YSNEGLNEEA 225
>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 620
Score = 333 bits (855), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 159/351 (45%), Positives = 233/351 (66%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + GF+ N +V LIDMY KCG ++ A +F + E+ V +W+A+I G A+HG
Sbjct: 271 IHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGL 330
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A AL F+KM + +P+ +TF+G+L AC +DEGR + M +YGI P ++HY
Sbjct: 331 AVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYT 389
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CM+DLL G L EAY+ IRNM +KP+ VWGALL C++H N++LAE A +L +L+P
Sbjct: 390 CMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPD 449
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +V+L+N+YA++ +WE V ++R++M + +KK S I V V+ F+AGD +H
Sbjct: 450 DSGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEVKNKVYAFLAGDVSHSN 509
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++ I+ ++L M GY P+T V D+EE EK + HSE+LA+ FGL++T PGT
Sbjct: 510 SDAIYAELKRLEGLMHEAGYAPDTGSVFHDVEEDEKTSMVCSHSERLAIAFGLISTSPGT 569
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ I KNLR+CEDCH A K IS+I+ REI VRD NR+H F+ G CSCGD+W
Sbjct: 570 RLLITKNLRICEDCHVAIKFISKIMEREITVRDVNRYHSFKHGMCSCGDHW 620
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 125/289 (43%), Gaps = 21/289 (7%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+HEY +SG+ R++ V LIDMY KCGC+ A RVF ++ R W++M+ A +G
Sbjct: 170 IHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGH 229
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
E+++ +M G++P T + ++ + + + GR + +G +
Sbjct: 230 PDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGRE-IHGFGWRHGFQSNDKVKT 288
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
++D+ ++ G ++ A + K V W A++ G +H LA A D++
Sbjct: 289 ALIDMYAKCGSVKVALALFERLREK-RVVSWNAIITGYAMH---GLAVGALDLFDKMRKE 344
Query: 182 NNGYHVVLSNIYAEAERW----EDVARVRKLMRNLGVKKTPGWSSITVDGVVH------- 230
+ H+ + A R E A ++R+ G+ T + +D + H
Sbjct: 345 DRPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEA 404
Query: 231 -EFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKE 278
+ + P + +W LL+ K+ G + + L + E E +
Sbjct: 405 YDLIRNMSVKPDS----GVWGALLNSCKIHGNVELAELALEKLIELEPD 449
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 77/158 (48%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H G N + L+ +Y L AR +F ++ ++ +F W+ +I+G A +G
Sbjct: 68 QLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNG 127
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A+ ++KM++ G++P+ T +L AC + + EGR + + G +
Sbjct: 128 PHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRS-IHEYVIKSGWERDLFVG 186
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ ++ G + +A + ++ + V+W ++L
Sbjct: 187 AALIDMYAKCGCVMDAGRVFDKIVVR-DAVLWNSMLAA 223
>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 904
Score = 333 bits (855), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 160/350 (45%), Positives = 232/350 (66%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
++ Y ++ + ++R+ TL+DM+ +CG E A +F + R V W+A I +A+ G
Sbjct: 491 IYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGN 550
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ A+ FN+MIE G+KP+GV FIG L AC H G V +G+ F SM +G+ P+ HYG
Sbjct: 551 VERAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYG 610
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L+EA + I++MP +PN V+W +LL CRV N+++A A+ ++ L P
Sbjct: 611 CMVDLLGRAGLLEEALQLIKDMPTEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVLAPE 670
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
G +V+LSN+YA A RW D+A+VR M+ G++K PG S I + G HEF +GDE+HP+
Sbjct: 671 RTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSVIQIRGKTHEFTSGDESHPE 730
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
KI M ++L G++P+ S VL+D++E+EK L RHSEKLA+ FGL+++ GT
Sbjct: 731 MRKIEAMLDELSQRASDLGHVPDLSNVLMDVDEQEKIFMLSRHSEKLAMAFGLISSNKGT 790
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDY 351
IRI+KNLRVC CH+ K S++ NREI++RD NRFH + G CSC D+
Sbjct: 791 TIRIVKNLRVCSYCHSFAKFASKVYNREIILRDNNRFHFIRQGKCSCSDF 840
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 124/278 (44%), Gaps = 43/278 (15%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + +++ V N+L+ Y +CG L+ AR+VF EM ER V +W++MI G A
Sbjct: 154 QIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARRE 213
Query: 61 QAKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
AK+A+ F +M+ + + PN VT + ++ AC + ++ G
Sbjct: 214 FAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETG------------------- 254
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
++ Y+FIR+ I+ N ++ AL+ ID+A+ R D+
Sbjct: 255 --------------EKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAK---RLFDEYG 297
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVK--KTPGWSSITVDGVVHEFVAGDE 237
N +++ Y ++ V LM + G++ + S+I+ + + G
Sbjct: 298 ASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKS 357
Query: 238 THPQAEKI-FQMWEKLLDG---MKLKGYIPNTSVVLLD 271
H + F+ W+ + + M +K + +T+ + D
Sbjct: 358 CHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFD 395
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 33/173 (19%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H Y ++GF +CN LIDMY+KC + A R+F M +TV TW++++ G +G+
Sbjct: 359 HGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEV 418
Query: 63 KEALTSFNKMIEIGI--------------------------------KPNGVTFIGLLHA 90
A +FN M E I +GVT + + A
Sbjct: 419 DAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASA 478
Query: 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM 143
CGH+G +D + +Y + I + +VD+ SR G + A ++
Sbjct: 479 CGHLGALDLAKWIYYYIEKNR-IQLDVRLGTTLVDMFSRCGDPESAMSIFNSL 530
>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
Length = 563
Score = 333 bits (855), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 167/351 (47%), Positives = 228/351 (64%), Gaps = 2/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y + ++ + LI+MY KCGC+E AR +F EM + WS+MI GLAIHG
Sbjct: 215 VHAYIKKRMIHVDLELNTALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGL 274
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A++AL F++M E KPN VTFIG+L AC H G V +G+R++ SM E GI P +EHYG
Sbjct: 275 AEDALNVFSRMEEAQAKPNHVTFIGILSACAHGGLVSDGKRYWSSML-ELGIEPSMEHYG 333
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL R G + EAY+F +P P+ V+W LL ++ + AE + +L +L+P
Sbjct: 334 CMVDLLCRGGLIDEAYDFALIIP-TPDPVIWRTLLVAYTKNRMLQKAEMVAGKLLELEPW 392
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+++L+N+YA + E V+ VRK+M+ G+K PG +SI VDG VH FV GD +HP+
Sbjct: 393 KAENYIILANLYASVSQLEKVSHVRKMMKENGIKALPGCTSIEVDGFVHNFVTGDWSHPE 452
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
AE+I + + + + GY P SVVL + ++EKE LY HSE+LA+ +GLM T
Sbjct: 453 AEEIKKTLRDVALKILISGYKPFVSVVLHLVNDEEKENVLYEHSERLAIAYGLMKTKAPA 512
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC DCH K+IS+I +REI+VRDR RFH F G+CSC DYW
Sbjct: 513 TIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVNGTCSCKDYW 563
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 100/179 (55%), Gaps = 5/179 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SGF + V ++L++ Y KC + AR+VF E+ ER + WSAM+ G A G
Sbjct: 113 QIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLG 172
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL F +M +GI+P+ V+ +G+L AC +G +D G ++ ++ + I +E
Sbjct: 173 MINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIG-KWVHAYIKKRMIHVDLELN 231
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
++++ ++ G +++A E M +K + W +++ G +H LAE+A +++
Sbjct: 232 TALINMYAKCGCIEKAREIFDEMRVK-DSKAWSSMIVGLAIH---GLAEDALNVFSRME 286
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 100/238 (42%), Gaps = 39/238 (16%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQG-LAIHGQAKEALTSFNKMIEIGI-KPNGVTFIG 86
G + AR++F ++ +F ++++I+G L +KE + F M+ G PN T
Sbjct: 38 GNFDYARKIFSQIPNPGIFAYNSVIRGCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAF 97
Query: 87 LLHACGHMGWVDEGRRF---------------------FYSMTTEYGIIPQIEH------ 119
+L AC + ++EG++ FYS E I ++
Sbjct: 98 VLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERN 157
Query: 120 ---YGCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGCRVHKNIDLAEEASR 173
+ MV +R G + EA R M I+P+ V +L C + +D+ +
Sbjct: 158 LVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHA 217
Query: 174 QLDQ-LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVH 230
+ + + ++ + L N+YA+ E + R++ + VK + WSS+ V +H
Sbjct: 218 YIKKRMIHVDLELNTALINMYAKCGCIE---KAREIFDEMRVKDSKAWSSMIVGLAIH 272
>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Cucumis sativus]
Length = 816
Score = 333 bits (855), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 157/353 (44%), Positives = 230/353 (65%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SGF N+ + L+D Y KCGC+ A + F EM ER +W+A+I A +G
Sbjct: 464 QLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNG 523
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
L SF +MI+ G KP+ V+F+ +L AC H G+V+E F SMT Y + P+ EHY
Sbjct: 524 NVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHY 583
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
MVD+L R G EA + + MP +P+ ++W ++L CR+HKN +LA++A+ +L ++
Sbjct: 584 TSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMED 643
Query: 181 LNNGY-HVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
L + ++ +SNIYA A +W++VA+V+K MR+ GV+K P +S + + H F A D++H
Sbjct: 644 LRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSH 703
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ +KI + L M+ KGY P+T+ L D++E K + L HSE+ A+ F LMNTP
Sbjct: 704 PEMKKILRKINALSKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPD 763
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G+PI +MKNLR C DCHAA K+IS+IV REI+VRD +RFH F+ G CSCGDYW
Sbjct: 764 GSPIVVMKNLRACTDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 81/162 (50%), Gaps = 2/162 (1%)
Query: 16 RVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEI 75
RV N L+DMY KC + A+++F + ++ W+AMI G+ +E + F+ M
Sbjct: 378 RVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRT 437
Query: 76 GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE 135
G+ + TF +L AC ++ + GR+ +S+ G + + ++D ++ G + +
Sbjct: 438 GVPADQATFASILRACANLASISLGRQ-LHSLLIRSGFMSNVYSGSALLDTYAKCGCMTD 496
Query: 136 AYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
A + MP + N V W AL+ + N+D + +Q+ Q
Sbjct: 497 AIKSFGEMPER-NSVSWNALISAYAQNGNVDGTLNSFQQMIQ 537
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 125/301 (41%), Gaps = 57/301 (18%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G+ N+ VCN+L+D Y K CL A ++F M + T+++++ G + G
Sbjct: 161 QIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEG 220
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ F ++ GIKP+ TF LL A +G D T++G
Sbjct: 221 LNEEAIELFLELHNSGIKPSDFTFAALLSAA--VGLDD----------TKFG-------- 260
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
Q+ + F+ N V ALL H +D + ++ +LD
Sbjct: 261 -------------QQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDG 307
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKL-MRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
++ Y+VV+++ + E RKL ++ P + +++ G + H
Sbjct: 308 IS--YNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIH 365
Query: 240 PQA------------EKIFQMW---------EKLLDGMKLKGYIPNTSVVLLDIEEKEKE 278
QA + M+ +K+ D + K +P T+++ +++ + E
Sbjct: 366 CQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHE 425
Query: 279 K 279
+
Sbjct: 426 E 426
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 15/164 (9%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+N N +I ++K G L AR +F M ERT +W+ +I G Q+KEA + M
Sbjct: 72 KNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADM 131
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCM-----VDLL 127
GI+P+ VT + LL G + E + + T +I Y M VD
Sbjct: 132 RRGGIEPDYVTLVTLLSGFGEL----ETKNVIVQIHTH--VIKLGYEYNLMVCNSLVDAY 185
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
+ L A + ++M + + V + +L+ G + N L EEA
Sbjct: 186 CKTHCLYLASQLFKHM-LNKDTVTFNSLMTG---YSNEGLNEEA 225
>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
Length = 903
Score = 333 bits (855), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 231/352 (65%), Gaps = 2/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIHG 60
VH++ SG N+ V L MY +CG LE AR +F ++ ER V ++AMI + +G
Sbjct: 553 VHDHLRHSGMESNVFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNG 612
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A EAL F +M + G +P+ +F+ +L AC H G DEG F SM YGI P +HY
Sbjct: 613 LAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHY 672
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C VD+L RAG+L +A E IR M +KP +VW LLG CR ++++D A+ + +LDP
Sbjct: 673 ACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDP 732
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +VVLSNI A A +W++ A VR M + G++K G S I + VHEFVAGD +HP
Sbjct: 733 GDESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKQAGKSWIEIKSRVHEFVAGDRSHP 792
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++E+I++ E+L ++ GY+P+T +VL ++E EKE+ L +HSE+LA+ G+M++
Sbjct: 793 RSEEIYRELERLHAEIREIGYVPDTRLVLRKVDEAEKERLLCQHSERLAIALGVMSSSTD 852
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T +R+MKNLRVCEDCH A K IS+IVN+EIVVRD +RFH F GSCSCGDYW
Sbjct: 853 T-VRVMKNLRVCEDCHNATKFISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 92/209 (44%), Gaps = 8/209 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +SG + + V L Y + G L+ A+ VF ER V +W+AM+ A HG
Sbjct: 247 IHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGH 306
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA F +M+ GI P+ VT + C + + R ++ E G+ I
Sbjct: 307 MSEAALLFARMLHEGIPPSKVTLVNASTGCSSLRF----GRMIHACALEKGLDRDIVLGN 362
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR--QLDQLD 179
++D+ +R G +EA +P N V W ++ G + A E + QL+ +
Sbjct: 363 ALLDMYTRCGSPEEARHLFEGIP--GNAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMA 420
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKL 208
P+ Y +L + + E +A RKL
Sbjct: 421 PVRATYLNLLEAVASNPEEARAMAEGRKL 449
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 83/174 (47%), Gaps = 5/174 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N L+ +Y+KC L VF +E R +W+ +I HGQAK A+ F++M + G++
Sbjct: 66 NHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVR 125
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
+ VTF+ +L AC +G + +GR ++ E G+ + ++ + G + A
Sbjct: 126 CDAVTFLAVLKACARLGDLSQGRS-IHAWIVESGLEGKSVLANLLLHIYGSCGCVASAML 184
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR--QLDQLDPLNNGYHVVLS 190
M + + V W A + ++D+A E + QL+ + P + LS
Sbjct: 185 LFERM--ERDLVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLS 236
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 4/161 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIE--MEER-TVFTWSAMIQGLA 57
++H G+ + ++ MY CG ++ A F ME+R V +W+A+I L+
Sbjct: 448 KLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLS 507
Query: 58 IHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
HG K AL F +M G+ PN +T + +L AC + EG + G+ +
Sbjct: 508 QHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEG-VIVHDHLRHSGMESNV 566
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ + R G L+ A E + ++ + V++ A++
Sbjct: 567 FVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAA 607
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 6/167 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + +SG + N L+ +Y CGC+ A +F M ER + +W+A I A G
Sbjct: 150 IHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERM-ERDLVSWNAAIAANAQSGD 208
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AL F +M G++P +T + L C + R +S+ E G+ +
Sbjct: 209 LDMALELFQRMQLEGVRPARITLVITLSVCAKI----RQARAIHSIVRESGLEQTLVVST 264
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
+ +R G L +A E + + + V W A+LG H ++ A
Sbjct: 265 ALASAYARLGHLDQAKEVF-DRAAERDVVSWNAMLGAYAQHGHMSEA 310
>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
Length = 627
Score = 333 bits (854), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 163/352 (46%), Positives = 231/352 (65%), Gaps = 1/352 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ + + V ++LI +Y KCG +EGA RVF E+ + + W+AM+ A H
Sbjct: 277 QIHGLCFKTSYDLSGFVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHA 336
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
KEA F KM G++PN +TF+ +L+AC H G V+EG+++F ++ +Y I P +HY
Sbjct: 337 HTKEAFDLFTKMENAGMRPNFITFLCVLYACSHAGLVEEGKKYF-ALMKKYEIEPGTQHY 395
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
MVDLL RAG LQEA I+ MP +P VWGA + GCR+H N DLA A+ ++ +L
Sbjct: 396 ASMVDLLGRAGKLQEALSVIKGMPTEPTESVWGAFITGCRIHGNTDLAAFAADKVFELGA 455
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+++G HV+LSN YA A R+ED A+ RK++R+ GVKK G S I VH+F AGD H
Sbjct: 456 VSSGLHVMLSNAYAAAGRYEDAAKARKMLRDRGVKKETGLSWIEEGNRVHKFAAGDRFHV 515
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ ++I+Q E L + M+ GY+ +TS VL ++ +EK + + HSE+LA+ FGL++ P G
Sbjct: 516 RMKEIYQKLEDLGEEMERAGYVADTSFVLREVGSEEKNQTIRYHSERLAIAFGLISIPLG 575
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRIMKNLRVC DCH A K IS++ R I+VRD NRFH F+ G CSC DYW
Sbjct: 576 RPIRIMKNLRVCGDCHNAIKFISKLSGRVIIVRDNNRFHRFEDGKCSCADYW 627
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 4/168 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++G+ ++ V ++L+DMY KCG ++ AR VF EM R V +WS MI G G+
Sbjct: 177 VHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGE 236
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHY 120
+EA+ F + + G+ N T ++ CG ++ G++ T Y + +
Sbjct: 237 HEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVG-- 294
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++ L S+ G ++ AY +PIK G +W A+L C H + A
Sbjct: 295 SSLISLYSKCGLIEGAYRVFDEVPIKNLG-MWNAMLIACAQHAHTKEA 341
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 81/173 (46%), Gaps = 5/173 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + +SG + VC+ LI+ Y K + +VF E E ++ TWS++I A +
Sbjct: 75 QIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTTWSSVISSFAQNE 134
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ A+ F +MI + P+ F AC +G D G+ + + + G +
Sbjct: 135 EPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKS-VHCLVIKTGYDVDVFVG 193
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR 173
+VD+ ++ G ++EA MP + N V W ++ G + + EEA R
Sbjct: 194 SSLVDMYAKCGDIKEARNVFDEMPHR-NVVSWSGMIYG---YTQLGEHEEAMR 242
>gi|357477567|ref|XP_003609069.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510124|gb|AES91266.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 611
Score = 333 bits (854), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 169/352 (48%), Positives = 228/352 (64%), Gaps = 15/352 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + ++GF + V N LID Y KCG ++ A+ VF LA+HG+
Sbjct: 274 LHGFMEKAGFLCIVSVNNALIDTYSKCGNVDMAKLVFN--------------ISLAMHGR 319
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A EA+ F++M E G++P+GVTFI LL+AC H G V++G F M YGI P IEHYG
Sbjct: 320 ADEAIRVFHEMEESGVRPDGVTFISLLYACSHSGLVEQGCALFSKMRNFYGIEPAIEHYG 379
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL RA LQ+AYEFIR MPI PN ++W LLG C +H NI+LAE +L ++DP
Sbjct: 380 CMVDLYGRAARLQKAYEFIRQMPILPNVIIWRTLLGACSIHGNIELAELVKARLAEMDPN 439
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G HV+LSN+YA A +W+DVA +R+ M +KK PGWS I +D V + FVAG++ +
Sbjct: 440 NSGDHVLLSNVYAVAGKWKDVAGIRRTMIEQSMKKIPGWSMIEIDKVNYGFVAGEKPNEV 499
Query: 242 AEKIF-QMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++ ++ E +L + +GY P VL D+EE+EKE + +HSEKLA FG+ P G
Sbjct: 500 TKEAHDKLREIMLRLREEEGYAPQVRSVLHDVEEEEKEDSMSKHSEKLAAAFGIAKLPKG 559
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+RI+KNLRVC DCH KLIS++ EI+VRDR+RFH F+ G CSC DYW
Sbjct: 560 RILRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKGGFCSCRDYW 611
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 84/217 (38%), Gaps = 59/217 (27%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVF------------- 47
++H ++ + GF +I V TLI MY +CGC E AR+VF EM + V
Sbjct: 134 QLHSHAFRHGFDDHIFVGTTLISMYAECGCYEYARKVFDEMSQPNVVAWNAVVTACFRCG 193
Query: 48 -------------------------TWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGV 82
+WS MI G A G +A F +++ +P+ V
Sbjct: 194 MWRVLGVSFGWREVVFCEMKMRDDASWSTMIVGFAKSGSFHDAFGFFKELLRDRNRPSEV 253
Query: 83 TFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL--------- 133
+ G+L AC G + G + + + G + + ++D S+ G +
Sbjct: 254 SLTGVLSACAQAGAFEFG-KILHGFMEKAGFLCIVSVNNALIDTYSKCGNVDMAKLVFNI 312
Query: 134 --------QEAYEFIRNMP---IKPNGVVWGALLGGC 159
EA M ++P+GV + +LL C
Sbjct: 313 SLAMHGRADEAIRVFHEMEESGVRPDGVTFISLLYAC 349
>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 600
Score = 333 bits (854), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 163/351 (46%), Positives = 231/351 (65%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + ++ G ++ + LIDMY KCG +E A+ VF M ER WSAMI GLA+HG
Sbjct: 251 VHAFIDRKGITVDLELSTALIDMYAKCGLIERAKSVFDSMVERDTKAWSAMIVGLAMHGL 310
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A++AL F++M+++ ++PN VTF+G+L AC H G VD+GRR++ +M E GI +E+YG
Sbjct: 311 AEDALGLFSRMLQLKVRPNNVTFVGVLSACAHSGLVDDGRRYWCTMQ-ELGIEASMENYG 369
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL R+G L EA+ F+ MPI PN V+W LL + ID+ E ASR+L +L+P
Sbjct: 370 CMVDLLCRSGLLDEAFSFVTGMPISPNSVIWRNLLVASKSSNRIDIVELASRRLFELEPQ 429
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N +V+LSN+YA +W+ V +RK M++ V G SSI ++G +H+FV D +HP+
Sbjct: 430 NPENYVLLSNLYALNSQWDRVRYMRKKMKDNNVTVVAGCSSIEINGYLHKFVVSDGSHPE 489
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+KI + ++ D + G+ P T+ VL D+ E+EKE L HSE+LA+ +GL+ T
Sbjct: 490 IKKIRLVLREIADRVLCAGHKPWTAAVLHDVVEEEKEVALCEHSERLAIAYGLLKTKAPH 549
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR++KNLR C DCH K+IS+ REI+VRDR RFH F GSCSC D+W
Sbjct: 550 VIRVVKNLRFCPDCHEVTKIISKSYGREIIVRDRVRFHRFIGGSCSCNDFW 600
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 134/297 (45%), Gaps = 25/297 (8%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM-EERTVFTWSAMIQGLAIH 59
++H + G + V L+++Y +C + AR VF M E++ + WS+MI G +
Sbjct: 148 QLHAQAFGHGLEPSPYVQTGLLNLYARCEEVALARNVFDGMVEDKNLVAWSSMIGGYSRM 207
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G EAL F M +G+ P+ VT + ++ AC G +D G ++ ++ GI +E
Sbjct: 208 GMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLG-KWVHAFIDRKGITVDLEL 266
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA----SRQL 175
++D+ ++ G ++ A +M ++ + W A++ G +H LAE+A SR L
Sbjct: 267 STALIDMYAKCGLIERAKSVFDSM-VERDTKAWSAMIVGLAMH---GLAEDALGLFSRML 322
Query: 176 DQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD-----GVVH 230
NN V + + A + +D R M+ LG++ + VD G++
Sbjct: 323 QLKVRPNNVTFVGVLSACAHSGLVDDGRRYWCTMQELGIEASMENYGCMVDLLCRSGLLD 382
Query: 231 E---FVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVV---LLDIEEKEKEKFL 281
E FV G P + +W LL K I + L ++E + E ++
Sbjct: 383 EAFSFVTGMPISPNS----VIWRNLLVASKSSNRIDIVELASRRLFELEPQNPENYV 435
>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 700
Score = 333 bits (854), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 152/351 (43%), Positives = 223/351 (63%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G + + V N LI+MY KCGC++ + VF +M R + TW+AMI G + HG
Sbjct: 350 LHARVEKLGIKNRVIVGNALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQHGL 409
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K+AL F M+ G PN VTF+G+L AC H+ V+EG + + + + P +EHY
Sbjct: 410 GKQALLLFQDMLSAGECPNHVTFVGVLSACAHLALVNEGFYYLNQLMKHFKVEPGLEHYT 469
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+V +L RAG L+EA F+R +K + V W LL C +H+N +L + + + Q+DP
Sbjct: 470 CVVAVLCRAGMLEEAENFMRTTQVKWDVVAWRVLLNACNIHRNYNLGTKIAETILQMDPR 529
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G + +LSN+YA+A W+ V +RK+MR VKK PG S I + VH F + HP+
Sbjct: 530 DMGTYTLLSNMYAKARSWDSVTMIRKMMRERNVKKEPGVSWIEIRNAVHVFSSDGSNHPE 589
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I+ + LL+ +K GY+PN VL D+E+++KE +L HSEKLA+ +GLM P
Sbjct: 590 CIQIYNKVQLLLEMIKQLGYVPNIEAVLHDVEDEQKESYLNYHSEKLAIAYGLMKIPSPA 649
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR++KNLR+CEDCH A KLIS++ NR I+VRD +RFH F+ G+C+C D+W
Sbjct: 650 PIRVIKNLRICEDCHTAVKLISKVTNRLIIVRDASRFHHFRDGTCTCTDHW 700
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 79/162 (48%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + G ++ V + L+DM+ KCG + AR+VF ++ R V W++++ +G
Sbjct: 248 QVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNG 307
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +E L + M G N TF LL+A M + G ++ + GI ++
Sbjct: 308 EFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHG-DLLHARVEKLGIKNRVIVG 366
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++++ S+ G + +Y+ +M + + W A++ G H
Sbjct: 367 NALINMYSKCGCIDSSYDVFFDMR-NRDIITWNAMICGYSQH 407
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 110/265 (41%), Gaps = 51/265 (19%)
Query: 3 HEYSNQSGFRR-NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
++ S +R NI N+LI++YVKC L AR +F EM R+V +++ ++ G G+
Sbjct: 42 NQSSTHHSYREFNIIQLNSLINLYVKCSKLRLARYLFDEMSLRSVVSYNVLMGGYLHSGE 101
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRR-----FFYSMTTEYGIIPQ 116
E + F M+ +PN F +L AC H G V EG + F + + + +
Sbjct: 102 HLEVVKLFKNMVSSLYQPNEYVFTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSS 161
Query: 117 IEH------------------------------YGCMVDLLSRAGFLQEAYEFIRNMPIK 146
+ H Y +++ L +G L EA E + M
Sbjct: 162 LVHMYSKCFHVDLALQVLESEHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMV-- 219
Query: 147 PNGVVWG-----ALLGGCRVHKNIDLAEEASRQLDQLDPLNNG--YHVVLSNIYAEA-ER 198
GVVW +++G C +++ L + QL L G + V + ++ + +
Sbjct: 220 DEGVVWDSVTYVSVMGLCGQIRDLGLGLQVHAQL-----LKGGLTFDVFVGSMLVDMFGK 274
Query: 199 WEDVARVRKLMRNLGVKKTPGWSSI 223
DV RK+ L + W+S+
Sbjct: 275 CGDVLSARKVFDGLQNRNVVVWTSL 299
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 95/203 (46%), Gaps = 14/203 (6%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEME------ERTVFTWSAMIQGLAIHGQAKEALTSFN 70
V ++L+ MY KC ++ A +V +E E + F +++++ L G+ EA+
Sbjct: 158 VKSSLVHMYSKCFHVDLALQV-LESEHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLG 216
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
+M++ G+ + VT++ ++ CG + + G + ++ + G+ + +VD+ +
Sbjct: 217 RMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQ-VHAQLLKGGLTFDVFVGSMLVDMFGKC 275
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGY-HVVL 189
G + A + + N VVW +L+ + + +D+ ++N + VL
Sbjct: 276 GDVLSARKVFDGLQ-NRNVVVWTSLMTAYLQNGEFEETLNLLSCMDREGTMSNEFTFAVL 334
Query: 190 SNIYA--EAERWEDV--ARVRKL 208
N +A A R D+ ARV KL
Sbjct: 335 LNAFAGMAALRHGDLLHARVEKL 357
>gi|326532424|dbj|BAK05141.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 413
Score = 333 bits (854), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 164/343 (47%), Positives = 225/343 (65%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G +CN LIDMY KCG + +R++F M R + +W+ MI G IHG KEA F
Sbjct: 71 GMAPETSICNALIDMYAKCGRIAFSRQIFDAMPSRDIVSWNTMIAGYGIHGLGKEATALF 130
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
M +P+GVTFI L+ AC H G V EG+ +F+ M +YGI P++EHY MVDLL+R
Sbjct: 131 LDMKNHACEPDGVTFICLISACSHSGLVTEGKHWFHMMAQKYGITPRMEHYISMVDLLAR 190
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
GFL EAY+FI++MP+K + VWGALL CRVHKNIDL ++ +R + +L P G V+L
Sbjct: 191 GGFLDEAYQFIQSMPMKADVRVWGALLAACRVHKNIDLGKQVARVIQKLGPEGTGNFVLL 250
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
SNI++ A R+++ A VR + + G KK+PG S I ++G +H F+ GD +HP++ +I+Q
Sbjct: 251 SNIFSAAGRFDEAAEVRIIQKEKGFKKSPGCSWIEINGSLHAFIGGDRSHPRSPEIYQEL 310
Query: 250 EKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNL 309
+L + GY +TS VL D+EE+EKEK L HSEKLA+ FG++ I + KNL
Sbjct: 311 HNILVDINKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGILTLSEDKDIFVTKNL 370
Query: 310 RVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
RVC DCH K +S + R+I+VRD NRFH F+ G CSCGD+W
Sbjct: 371 RVCGDCHTVIKYMSLVRRRDIIVRDANRFHHFKNGQCSCGDFW 413
Score = 44.3 bits (103), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+G A A F KM ++P+ T + L+ AC H+ + G+ S+ G+ P+
Sbjct: 19 NGMADAAFLVFRKMQVCNVEPDVATMVSLIPACAHLAALQHGKCSHGSVIVR-GMAPETS 77
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEAS 172
++D+ ++ G + + + MP + + V W ++ G +H L +EA+
Sbjct: 78 ICNALIDMYAKCGRIAFSRQIFDAMPSR-DIVSWNTMIAGYGIH---GLGKEAT 127
>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 627
Score = 333 bits (854), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 163/336 (48%), Positives = 216/336 (64%), Gaps = 2/336 (0%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM-IEIGI 77
N+LIDMY KCG L A+R+F M ERT +W+AM+ G + HG +E L F M E +
Sbjct: 292 NSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRV 351
Query: 78 KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTT-EYGIIPQIEHYGCMVDLLSRAGFLQEA 136
KP+ VT + +L C H D G + M EYGI P EHYGC+VD+L RAG + EA
Sbjct: 352 KPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEA 411
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
+EFI+ MP KP V G+LLG CRVH ++D+ E +L +++P N G +V+LSN+YA A
Sbjct: 412 FEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASA 471
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGM 256
RWEDV VR +M V K PG S I + +H F A D THP+ E++ +++ M
Sbjct: 472 GRWEDVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKM 531
Query: 257 KLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCH 316
K GY+P+ S VL D++E++KEK L HSEKLALTFGL+ T G PIR+ KNLR+C DCH
Sbjct: 532 KQAGYVPDISCVLYDVDEEQKEKMLLGHSEKLALTFGLITTGEGIPIRVFKNLRICVDCH 591
Query: 317 AAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
K+ S++ RE+ +RD+NRFH G CSCGDYW
Sbjct: 592 NFAKIFSKVFEREVSLRDKNRFHQIVKGICSCGDYW 627
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 81/153 (52%), Gaps = 4/153 (2%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
+ +I V ++L+DMY K G +E AR +F + ER V + +A+I G A G +EAL F
Sbjct: 183 YDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQ 242
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLLSR 129
++ G++PN VT+ LL A + +D G++ + + E +++ ++D+ S+
Sbjct: 243 RLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQN--SLIDMYSK 300
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
G L A NMP + + W A+L G H
Sbjct: 301 CGNLSYAQRLFDNMPER-TAISWNAMLVGYSKH 332
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 5/178 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH + ++ + + L+ Y KC CLE AR+V EM E+ V +W+AMI + G
Sbjct: 72 RVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTG 131
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EAL+ F +M+ KPN TF +L +C + G++ + + ++ I
Sbjct: 132 HSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQ-IHGLIVKWNYDSHIFVG 190
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++D+ ++AG ++EA E +P + + V A++ G + + L EEA +L
Sbjct: 191 SSLLDMYAKAGQIEEAREIFECLPER-DVVSCTAIIAG---YAQLGLDEEALEMFQRL 244
>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
Length = 608
Score = 333 bits (854), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 164/349 (46%), Positives = 237/349 (67%), Gaps = 19/349 (5%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ + N+LI+MY KCG L A +VF M + + +W+AMI G A HG+A+EA+ F+ M+
Sbjct: 269 DVLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDLASWNAMILGFATHGKAEEAMNCFDCMV 328
Query: 74 EIG--IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
+ G +KPN VTF+ LL AC H G V++GR++F M EYGI P +EHYGC++DLL+RAG
Sbjct: 329 KEGKNVKPNSVTFVALLIACNHRGMVNKGRQYFDMMVREYGIEPALEHYGCIIDLLARAG 388
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGC-RVHKNIDLAEEASRQL------DQLDPLN-N 183
++ EA + + +MP+KP+ V+W +LL C + +++L+EE +R + +Q N +
Sbjct: 389 YITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTMEDNQSSNSNCS 448
Query: 184 GYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAE 243
G +V+LS +YA A RW DV VRKLM + G++K PG SSI ++G+ +EF AGD +HPQ +
Sbjct: 449 GAYVLLSRVYASANRWNDVGIVRKLMSDHGIRKEPGCSSIEINGISNEFFAGDTSHPQTK 508
Query: 244 KIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPI 303
+I+Q + + D +L+ + T+ + KE L HSE+LA+ FGL++ PP TPI
Sbjct: 509 QIYQQLKVIDD--RLRSIVDATN-------DSSKEYSLRLHSERLAIAFGLISLPPQTPI 559
Query: 304 RIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
RI KNLRVC DCH KLIS++ N EI+VRDR RFH F+ GSCSC DYW
Sbjct: 560 RIFKNLRVCSDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 608
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 7/178 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + GF ++ V N LI Y CGCL+ AR+VF EM ER++ +W++MI L G
Sbjct: 153 QVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRVG 212
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG--RRFFYSMTTEYGIIPQIE 118
+ AL F M + +P+G T +L AC +G + G F + + +
Sbjct: 213 EYDSALQLFRDM-QKSFEPDGYTMQSVLSACAGLGSLSLGTWSHVFLLRNCDVDVAMDVL 271
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLD 176
++++ + G L+ A + + M K + W A++ G H AEEA D
Sbjct: 272 IKNSLIEMYCKCGSLRMAEQVFQGMR-KHDLASWNAMILGFATHGK---AEEAMNCFD 325
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 34/160 (21%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLAIH-GQAKEALTSFNKMIEIG-IKPNGVTFIGLLHAC 91
A RVF +E + F W+ +I+ A + +EA + KM+E G P+ TF +L AC
Sbjct: 83 AFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESAPDKHTFPFVLKAC 142
Query: 92 GHMGWVDEGRR---------FFYSMTTEYGIIPQIEHYGC-------------------- 122
++ + EG++ F + G+I GC
Sbjct: 143 AYIFGLSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERSLVSWN 202
Query: 123 -MVDLLSRAGFLQEAYEFIRNM--PIKPNGVVWGALLGGC 159
M+D L R G A + R+M +P+G ++L C
Sbjct: 203 SMIDALVRVGEYDSALQLFRDMQKSFEPDGYTMQSVLSAC 242
>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
Length = 903
Score = 333 bits (854), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 231/352 (65%), Gaps = 2/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIHG 60
VH++ SG N+ V L MY +CG LE AR +F ++ ER V ++AMI + +G
Sbjct: 553 VHDHLRHSGMESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNG 612
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A EAL F +M + G +P+ +F+ +L AC H G DEG F SM YGI P +HY
Sbjct: 613 LAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHY 672
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C VD+L RAG+L +A E IR M +KP +VW LLG CR ++++D A+ + +LDP
Sbjct: 673 ACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDP 732
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +VVLSNI A A +W++ A VR M + G++K G S I + VHEFVAGD +HP
Sbjct: 733 GDESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKEAGKSWIEIKSRVHEFVAGDRSHP 792
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++E+I++ E+L ++ GY+P+T +VL ++E EKE+ L +HSE+LA+ G+M++
Sbjct: 793 RSEEIYRELERLHAEIREIGYVPDTRLVLRKVDEAEKERLLCQHSERLAIALGVMSSSTD 852
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T +R+MKNLRVCEDCH A K IS+IVN+EIVVRD +RFH F GSCSCGDYW
Sbjct: 853 T-VRVMKNLRVCEDCHNATKFISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 91/209 (43%), Gaps = 8/209 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +SG + + V L Y + G L A+ VF ER V +W+AM+ A HG
Sbjct: 247 IHFIVRESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGH 306
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA F +M+ GI P+ VT + C + + R + E G+ I
Sbjct: 307 MSEAALLFARMLHEGISPSKVTLVNASTGCSSLRF----GRMIHGCALEKGLDRDIVLGN 362
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR--QLDQLD 179
++D+ +R G +EA + +P N V W ++ G + A E + QL+ +
Sbjct: 363 ALLDMYTRCGSPEEARHLFKRIPC--NAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMA 420
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKL 208
P+ Y +L + + E +A RKL
Sbjct: 421 PVRATYLNLLEAVASNPEEARAMAEGRKL 449
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 4/161 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIE--MEER-TVFTWSAMIQGLA 57
++H G+ + ++ MY CG ++ A F ME+R V +W+A+I L+
Sbjct: 448 KLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLS 507
Query: 58 IHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
HG K AL F +M G+ PN +T + +L AC + EG + G+ +
Sbjct: 508 QHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEG-EIVHDHLRHSGMESNL 566
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ + R G L+ A E + ++ + V++ A++
Sbjct: 567 FVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAA 607
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N L+ +Y+KC L VF +E R +W+ +I HGQAK A+ F++M + G++
Sbjct: 66 NHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVR 125
Query: 79 PNGVTFIGLLHACGHMGWVDEGR 101
+ VTF+ +L AC +G + +GR
Sbjct: 126 CDAVTFLAVLKACARLGDLSQGR 148
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 6/167 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + +SG + + N L+ +Y CGC+ A +F +M ER + +W+A I A G
Sbjct: 150 IHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKM-ERDLVSWNAAIAANAQSGD 208
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AL F +M G++P +T + L C + + + + E G+ +
Sbjct: 209 LGIALELFQRMQLEGVRPARITLVIALTVCATI----RQAQAIHFIVRESGLEQTLVVST 264
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
+ +R G L +A E + + + V W A+LG H ++ A
Sbjct: 265 ALASAYARLGHLYQAKEVF-DRAAERDVVSWNAMLGAYAQHGHMSEA 310
>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 620
Score = 333 bits (853), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 161/353 (45%), Positives = 231/353 (65%), Gaps = 10/353 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V E +GF N+ + N LI MY +CG L AR VF M +++ +W+AMI +HG
Sbjct: 276 VGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGM 335
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ LT F+ MI+ GI+P+G F+ +L AC H G D+G F +M EY + P EHY
Sbjct: 336 GETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYS 395
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL RAG L EA EFI +MP++P+G VWGALLG C++HKN+D+AE A ++ + +P+
Sbjct: 396 CLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPM 455
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+V++SNIY++++ E + R+R +MR +K PG+S + G VH F+AGD +H Q
Sbjct: 456 NIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGKVHLFLAGDRSHEQ 515
Query: 242 AEKIFQMWEKL-LDGMKLKGYIPNTSVVLLDIEEKEKEKFLYR-HSEKLALTFGLMNTPP 299
E++ +M ++L M+L G +D + E+ R HSE+LA+ FG++N+ P
Sbjct: 516 TEEVHRMLDELETSVMELAGN--------MDCDRGEEVSSTTREHSERLAIAFGILNSIP 567
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GT I ++KNLRVCEDCH KL+S+IV+R VVRD +RFH F+ G CSC DYW
Sbjct: 568 GTEILVIKNLRVCEDCHVFIKLVSKIVDRRFVVRDASRFHYFKDGVCSCKDYW 620
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 2/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G + V N+ I MY+KCG +E RR+F EM + + TW+A+I G + +G
Sbjct: 175 LHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGL 234
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A + L F +M G+ P+ T + +L +C H+G G+ + G P +
Sbjct: 235 AYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQE-VGELVEANGFAPNVFLSN 293
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++ + +R G L +A MP+K + V W A++G +H
Sbjct: 294 ALISMYARCGNLAKARAVFDIMPVK-SLVSWTAMIGCYGMH 333
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 4/144 (2%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVF--TWSAMIQGLAIHGQAKEALTSFNKMIE 74
V LI MY KCG +E AR+VF E + ++A+I G + + +A F +M E
Sbjct: 87 VLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAFMFRRMKE 146
Query: 75 IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ 134
G+ + VT +GL+ C ++ GR + + G ++ + + + G ++
Sbjct: 147 TGVSVDSVTILGLVPLCTVPEYLWLGRS-LHGECVKGGTYSEVAVLNSFITMYMKCGSVE 205
Query: 135 EAYEFIRNMPIKPNGVVWGALLGG 158
MP+K + W A++ G
Sbjct: 206 SGRRLFDEMPVK-GLITWNAVISG 228
>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial; Flags: Precursor
gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 628
Score = 333 bits (853), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 164/336 (48%), Positives = 215/336 (63%), Gaps = 2/336 (0%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM-IEIGI 77
N+LIDMY KCG L ARR+F M ERT +W+AM+ G + HG +E L F M E +
Sbjct: 293 NSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRV 352
Query: 78 KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTT-EYGIIPQIEHYGCMVDLLSRAGFLQEA 136
KP+ VT + +L C H D G F M EYG P EHYGC+VD+L RAG + EA
Sbjct: 353 KPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEA 412
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
+EFI+ MP KP V G+LLG CRVH ++D+ E R+L +++P N G +V+LSN+YA A
Sbjct: 413 FEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASA 472
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGM 256
RW DV VR +M V K PG S I + +H F A D THP+ E++ +++ M
Sbjct: 473 GRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKM 532
Query: 257 KLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCH 316
K GY+P+ S VL D++E++KEK L HSEKLALTFGL+ T G PIR+ KNLR+C DCH
Sbjct: 533 KQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCH 592
Query: 317 AAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
K+ S++ RE+ +RD+NRFH G CSCGDYW
Sbjct: 593 NFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 90/178 (50%), Gaps = 5/178 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH + ++ + + L+ Y KC CLE AR+V EM E+ V +W+AMI + G
Sbjct: 73 RVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTG 132
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EALT F +M+ KPN TF +L +C + G++ + + ++ I
Sbjct: 133 HSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQ-IHGLIVKWNYDSHIFVG 191
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++D+ ++AG ++EA E +P + + V A++ G + + L EEA +L
Sbjct: 192 SSLLDMYAKAGQIKEAREIFECLPER-DVVSCTAIIAG---YAQLGLDEEALEMFHRL 245
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 81/153 (52%), Gaps = 4/153 (2%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
+ +I V ++L+DMY K G ++ AR +F + ER V + +A+I G A G +EAL F+
Sbjct: 184 YDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFH 243
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLLSR 129
++ G+ PN VT+ LL A + +D G++ + + E +++ ++D+ S+
Sbjct: 244 RLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQN--SLIDMYSK 301
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
G L A NMP + + W A+L G H
Sbjct: 302 CGNLSYARRLFDNMPER-TAISWNAMLVGYSKH 333
>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Vitis vinifera]
Length = 629
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 163/346 (47%), Positives = 230/346 (66%), Gaps = 7/346 (2%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
SGF N + N LI+MY +CG L AR +F M E+ V +W+A+I G +HGQ + A+
Sbjct: 289 SGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQL 348
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
F++MI P+G F+ +L AC H G ++G +F +M +YG+ P EHY C+VDLL
Sbjct: 349 FDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLG 408
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVV 188
RAG L+EA + I +M ++P+G VWGALLG C++H+N++LAE A ++ + +P N GY+V+
Sbjct: 409 RAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNIGYYVL 468
Query: 189 LSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQM 248
LSNI++EA E + RVR +MR +KK PG S + G +H F+AGD THPQA++I+ M
Sbjct: 469 LSNIFSEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRIHLFLAGDRTHPQAQEIYHM 528
Query: 249 WEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKF--LYRHSEKLALTFGLMNTPPGTPIRIM 306
+ L D +K +G + D E + +E + HSEKLA+ FGL+NT PGT I ++
Sbjct: 529 LDGLEDIIKRRGGSNDN-----DQESRNEELITGMGVHSEKLAIAFGLINTEPGTEITVI 583
Query: 307 KNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
KNLRVC DCH KL+SEIV+R++VVRD RFH F+ G CSC DYW
Sbjct: 584 KNLRVCGDCHLFLKLVSEIVDRQLVVRDATRFHHFKNGVCSCKDYW 629
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 6/228 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H S + G ++ V N L+ MYV+CG ++ AR++F M E+ + TW+AMI G A +G
Sbjct: 181 LHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGL 240
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM-TTEYGIIPQIEHY 120
A L + KM GI P+ VT +G+L +C H+G GR + + +G P +++
Sbjct: 241 AGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKN- 299
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
++++ +R G L +A M K N + W A++ G +H +LA + ++ D
Sbjct: 300 -ALINMYARCGNLVKARAIFDGMTEK-NVISWTAIIAGYGMHGQGELAVQLFDEMISSDE 357
Query: 181 LNNG--YHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD 226
L +G + VLS + + + R+ G++ P S VD
Sbjct: 358 LPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVD 405
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/339 (20%), Positives = 140/339 (41%), Gaps = 59/339 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIE--MEERTVFTWSAMIQGLAI 58
++H + ++G V +LI MY KC + AR+VF E ++A+I G ++
Sbjct: 77 QLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSL 136
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACG---HMGWVDEGRRFFYSMTTEYGIIP 115
+ + +A+ F +M + G+ N VT +GL+ C H+G+ ++ + +G+
Sbjct: 137 NSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTS----LHACSVRFGLDG 192
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG----------CRVHKNI 165
+ C++ + R G + A + MP K + W A++ G +++ +
Sbjct: 193 DLSVGNCLLTMYVRCGSVDFARKLFDGMPEK-GLITWNAMISGYAQNGLAGHVLDLYRKM 251
Query: 166 DL---------------------AEEASRQLDQLDPLNN-GYHVVLS----NIYAEAERW 199
+ A A R+++Q L+ G++ L N+YA R
Sbjct: 252 EFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYA---RC 308
Query: 200 EDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLK 259
++ + R + + K W++I +AG H Q E Q++++++ +L
Sbjct: 309 GNLVKARAIFDGMTEKNVISWTAI---------IAGYGMHGQGELAVQLFDEMISSDELP 359
Query: 260 GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
SV+ EK LY + + +GL P
Sbjct: 360 DGAAFVSVLSACSHAGLTEKGLYYFT-AMERDYGLQPGP 397
>gi|222630733|gb|EEE62865.1| hypothetical protein OsJ_17668 [Oryza sativa Japonica Group]
Length = 620
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 166/352 (47%), Positives = 236/352 (67%), Gaps = 7/352 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIH 59
VHE++ + G RN+RVCN+LIDMY KCG L A VF I+ E++T+ +++A IQ ++H
Sbjct: 69 VHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQTLVSYNAAIQAHSMH 128
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G +AL F++M I+P+GVT++ +L C H G VD+G R F SM + P ++H
Sbjct: 129 GHGGDALRLFDEM-PTRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMR----VAPNMKH 183
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YG +VDLL RAG L EAY+ + +MP + V+W LLG ++H ++LAE A+ +L +L
Sbjct: 184 YGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELG 243
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
+G +V+LSN+YA RW DV RVR MR+ V+K PG+S +DGV+H+F+ GD+ H
Sbjct: 244 SNVDGDYVLLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEH 303
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ ++I++ E ++ + GY P TS VL DI E+EK+ L HSEKLA+ FGL+ TPP
Sbjct: 304 PRWQEIYRALEDIVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEKLAIAFGLIATPP 363
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDY 351
G +R++KNLR+C DCH KLIS+ R IV+RDR RFH F+ G CSC DY
Sbjct: 364 GETLRVIKNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRDY 415
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 95/241 (39%), Gaps = 31/241 (12%)
Query: 41 MEERTVFTWSAMIQGLAIHGQAKEALTSFNKM------IEIGIKPNGVTFIGLLHACGHM 94
M R V TW++++ GLA + AL F+++ + +PN VT + L AC +
Sbjct: 1 MTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSACAQI 60
Query: 95 GWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGA 154
G + +G + + +G+ + ++D+ S+ G L A + + IKP +
Sbjct: 61 GLLKDG-MYVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHS--IKPEDQTLVS 117
Query: 155 LLGGCRVHKNIDLAEEASRQLDQL----DPLNNGYHVVL-----SNIYAEAERWEDVARV 205
+ H +A R D++ +P Y VL S + + R + RV
Sbjct: 118 YNAAIQAHSMHGHGGDALRLFDEMPTRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMRV 177
Query: 206 RKLMRNLG----VKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGY 261
M++ G + G + D V+ D +W+ LL K+ G
Sbjct: 178 APNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPAD---------IVLWQTLLGAAKMHGV 228
Query: 262 I 262
+
Sbjct: 229 V 229
>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
Length = 640
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 157/352 (44%), Positives = 233/352 (66%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + GF ++ +L+DMY K G + AR +F ++ R + +W+AMI G +HG
Sbjct: 289 LHGYGWRRGFGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGH 348
Query: 62 AKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A A F +M E + P+ +TF+G+L AC H G V E + F M T Y I P ++HY
Sbjct: 349 ADHACELFRRMRNEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHY 408
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VD+L +G +EA + I+ M +KP+ +WGALL GC++HKN++LAE A +L +L+P
Sbjct: 409 TCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALHKLIELEP 468
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ G +V+LSNIYA++ +WE+ ARVRKLM N G+KK S I + G H F+ GD +HP
Sbjct: 469 EDAGNYVLLSNIYAQSGKWEEAARVRKLMTNRGLKKIIACSWIELKGKSHGFLVGDASHP 528
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++++I++ E+L + GY+P+T+ V ++E+ EK + HSE+LA+ FGL++TPPG
Sbjct: 529 RSDEIYEELERLEGLISQTGYVPDTTSVFHNVEDDEKRNMVRGHSERLAIAFGLISTPPG 588
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T + + KNLRVCEDCH KLIS+I REI++RD NR+H F G CSC D+W
Sbjct: 589 TKLLVTKNLRVCEDCHVVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 640
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 2/174 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+ ++ + ++ VC LIDMY KCGC++ A VF R W++MI +G+
Sbjct: 188 VHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQNGR 247
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL M GI P VT + + A G + GR + G Q +
Sbjct: 248 PAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRE-LHGYGWRRGFGSQDKLKT 306
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
++D+ +++G++ A + + W A++ G +H + D A E R++
Sbjct: 307 SLLDMYAKSGWVTVARVLFDQL-FHRELISWNAMICGFGMHGHADHACELFRRM 359
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 79/156 (50%), Gaps = 10/156 (6%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER-TVFTWSAMIQGLAIHGQAKEALT 67
SG + + L+D+Y CG + ARR+F EM + VF W+ +I+ A G + A+
Sbjct: 92 SGLGLDAVLATRLVDLYASCGLVSVARRLFDEMPNQGNVFLWNVLIRAYARDGPREAAIE 151
Query: 68 SFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGC--M 123
+ +M+ G ++P+ T+ +L AC + + GR M T + + + C +
Sbjct: 152 LYREMLACGSMEPDNFTYPPVLKACAALLDLGAGREVHDRVMRTSWA----ADVFVCAGL 207
Query: 124 VDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
+D+ ++ G + EA+ + ++ + VVW +++ C
Sbjct: 208 IDMYAKCGCVDEAWAVFDSTTVR-DAVVWNSMIAAC 242
>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
Length = 829
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 161/353 (45%), Positives = 229/353 (64%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER-TVFTWSAMIQGLAIHG 60
V E + G + V ++++Y KCG +E RR+F + R V W+AMI A G
Sbjct: 477 VSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFG 536
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY-GIIPQIEH 119
Q+ EAL F +M G++P+ +F+ +L AC H G D+G+ +F SMTTEY + I+H
Sbjct: 537 QSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQH 596
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
+GC+ DLL R G L+EA EF+ +P+KP+ V W +LL CR H+++ A+E + +L +L+
Sbjct: 597 FGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLE 656
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P +V LSNIYAE ++W VA+VRK M GVKK G S+I + +H+F GD+ H
Sbjct: 657 PRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAH 716
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ +I + KL MK GY+P+T +VL ++E+EKE+ L+ HSE+LA+ GL++TP
Sbjct: 717 PRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSERLAIALGLISTPL 776
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GTP+R+ KNLRVC DCH A KLIS+I R+IVVRD RFH F+ G CSC DYW
Sbjct: 777 GTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 829
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 3/160 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE-RTVFTWSAMIQGLAIH 59
R+H+ S + +V N L++MY KCG L A+RVF +ME R V +WS M A+H
Sbjct: 166 RIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALH 225
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G EAL F M+ +GIK + +L AC V +G R +S G ++
Sbjct: 226 GNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG-RLIHSCIALSGFESELLV 284
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV-WGALLGG 158
++ + R G ++EA + M VV W +L
Sbjct: 285 ANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSA 324
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 77/153 (50%), Gaps = 3/153 (1%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N+ + N ++ MY C A+ F +E+R +++W+ ++ AI GQ+KE L + +M
Sbjct: 78 NLILGNHIVSMYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMR 137
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMT-TEYGIIPQIEHYGCMVDLLSRAGF 132
+ G++P+ VTFI L +CG + +G R + + I P++ + ++++ + G
Sbjct: 138 QDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSN--ALLNMYKKCGS 195
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNI 165
L A M N + W + G +H N+
Sbjct: 196 LSHAKRVFAKMERTRNVISWSIMAGAHALHGNV 228
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 77/163 (47%), Gaps = 8/163 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ +N+ V N L+ MY KCG AR VF +ME+R++ +W+ +I
Sbjct: 369 LHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRL 428
Query: 62 AKEALTSFNKMIEIG-------IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGII 114
EA F +M+E+ +KP+ + F+ +L+AC + +++G + G+
Sbjct: 429 VAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQG-KMVSEQAASCGLS 487
Query: 115 PQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
+V+L + G ++E + +P+ +W A++
Sbjct: 488 SDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIA 530
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE--RTVFTWSAMIQGLAIH 59
+H SGF + V N ++ MY +CG +E AR+VF M+E R V +W+ M+ +
Sbjct: 269 IHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHN 328
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR 101
+ K+A+ + +M ++ + VT++ LL AC V GR
Sbjct: 329 DRGKDAIQLYQRM---QLRADKVTYVSLLSACSSAEDVGLGR 367
>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 867
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 226/352 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H Y+ + + V + L+ MY K G ++ A VF +ER + +W++MI G + HG
Sbjct: 516 QFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHG 575
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
QAK+AL F++M + + + VTFIG++ AC H G V++G+++F SM ++ I P ++HY
Sbjct: 576 QAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHY 635
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DL SRAG L++A I MP P VW LLG RVH+N++L E A+ +L L P
Sbjct: 636 SCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQP 695
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+LSN+YA A W++ VRKLM VKK PG+S I V + F+AGD THP
Sbjct: 696 EDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHP 755
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ +L +K GY P+T V DIE+++KE L HSE+LA+ FGL+ TPP
Sbjct: 756 LSNQIYSKLSELSIRLKDAGYQPDTKNVFHDIEDEQKETILSHHSERLAIAFGLIATPPE 815
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PI+I+KNLRVC DCH KL+S + R IVVRD NRFH F+ G CSCGDYW
Sbjct: 816 IPIQIVKNLRVCGDCHNFTKLVSLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 87/195 (44%), Gaps = 3/195 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + GF I V N+LI +Y + G L AR VF +ME R TW++MI G +G
Sbjct: 215 QVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNG 274
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q E FNKM G+KP +TF ++ +C + + + QI
Sbjct: 275 QDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVIT 334
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL--DQL 178
MV LS+ + +A M N V W A++ GC + D A Q+ + +
Sbjct: 335 ALMV-ALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGV 393
Query: 179 DPLNNGYHVVLSNIY 193
P + Y +L+ Y
Sbjct: 394 KPNHFTYSAILTVHY 408
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 87/175 (49%), Gaps = 4/175 (2%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
++ + R+ V L+D YVK G A +VF +E + + WSAM+ G A G+ +EA
Sbjct: 421 KTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAK 480
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F+++I+ GIKPN TF +++AC E + F++ + + + +V +
Sbjct: 481 LFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMY 540
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182
++ G + A+E + + + V W +++ G H A++A D++ N
Sbjct: 541 AKRGNIDSAHEVFKRQK-ERDLVSWNSMISGYSQHGQ---AKKALEVFDEMQKRN 591
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 114/231 (49%), Gaps = 14/231 (6%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + G ++ V +L+DMY+K + RRVF EM ER V +W++++ G + +G
Sbjct: 114 QVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNG 173
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
F +M G+ PN T ++ A + G V G + ++M ++G I +
Sbjct: 174 LYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQ-VHAMVVKHGFEEAIPVF 232
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG-CRVHKNIDLAEEASR-QLDQL 178
++ L SR G L++A + M I+ + V W +++ G R +++++ E ++ QL +
Sbjct: 233 NSLISLYSRLGMLRDARDVFDKMEIR-DWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGV 291
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVV 229
P H+ +++ ++A V KLM+ +K S T D +V
Sbjct: 292 KPT----HMTFASVIKSCASLRELALV-KLMQCKALK-----SGFTTDQIV 332
>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
Length = 635
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 154/334 (46%), Positives = 223/334 (66%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
+ L+ MY K G + A RVF M + + +W+AMI G A +GQ EAL F+ ++ G +
Sbjct: 302 SALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCR 361
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ VTF+G+L AC H G VD+G F+S+ EYGI +HY C++DLLSR+G + A E
Sbjct: 362 PDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRSGLFERAEE 421
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAER 198
I M +KPN +W +LLGGCR+HKN+ LA A+ L +++P N +V L+NIYA
Sbjct: 422 MINTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPENPATYVTLANIYASVGL 481
Query: 199 WEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKL 258
+++V R++M G+ K P S I V +H F+ GD+ HPQAE+++ + +KL M+
Sbjct: 482 FDEVENTRRIMELKGITKMPASSWIEVGTRMHVFLVGDKLHPQAEQVYALLKKLYVKMRE 541
Query: 259 KGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAA 318
+GY+ +T VL D+E+++K++ + HSE+LA+ FG++ TP G PI++ KNLR+C DCH
Sbjct: 542 EGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGAPIKVFKNLRICGDCHTT 601
Query: 319 FKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
KLIS+IV REI+VRD NRFH F+ GSCSC DYW
Sbjct: 602 IKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 80/177 (45%), Gaps = 5/177 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G + V + L DMY KCG ++ AR VF M R V +W+AM++ +
Sbjct: 184 LHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFDARR 243
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
E F +M+ GI+PN T+ G+L AC G++ MT
Sbjct: 244 DGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFAE-S 302
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+V + S+ G + A R MP K + V W A++ G + D EA R D L
Sbjct: 303 ALVHMYSKYGDMGTAVRVFRGMP-KLDLVSWTAMISGYAQNGQPD---EALRYFDML 355
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 7/130 (5%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI----EIGIKPNGVTFIG 86
L AR +F M R F+WSA++ A HGQ + AL + +M+ G+ N T
Sbjct: 109 LASARALFDRMPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLREPGSAGVD-NEFTASS 167
Query: 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIK 146
L A GR + GI + + D+ ++ G + +A MP++
Sbjct: 168 ALAAATAARCARAGRE-LHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVR 226
Query: 147 PNGVVWGALL 156
+ V W A++
Sbjct: 227 -DVVSWTAMV 235
>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 850
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 155/336 (46%), Positives = 218/336 (64%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V N LIDMY KCG + AR VF M + TW++++ G +HG +EAL F++M IG
Sbjct: 515 VSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIG 574
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
K +GVT + +L+AC H G +D+G +F M T +G+ P EHY C+VDLL RAG L A
Sbjct: 575 FKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAA 634
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
I MP++P VVW A L CR+H ++L E A+ ++ +L ++G + +LSN+YA A
Sbjct: 635 LRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANA 694
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGM 256
RW+DV R+R LMR+ GVKK PG S + F GD+THP A++I+Q+ + +
Sbjct: 695 GRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRI 754
Query: 257 KLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCH 316
K GY+P T L D++++EK+ L+ HSEKLAL +G++ TP G IRI KNLRVC DCH
Sbjct: 755 KDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCH 814
Query: 317 AAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
AF +S I++ +I++RD +RFH F+ GSCSC YW
Sbjct: 815 TAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H S +GF N+ V N L+ MY +C L AR+VF EM V +W+++I+ A G+
Sbjct: 149 AHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGK 208
Query: 62 AKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEH 119
K AL F++M E G +P+ +T + +L C +G G++ +++T+E +I +
Sbjct: 209 PKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSE--MIQNMFV 266
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
C+VD+ ++ G + EA NM +K + V W A++ G + I E+A R +++
Sbjct: 267 GNCLVDMYAKCGMMDEANTVFSNMSVK-DVVSWNAMVAG---YSQIGRFEDAVRLFEKM 321
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 10/167 (5%)
Query: 17 VCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
V N LIDMY KC ++ AR +F + +ER V TW+ MI G + HG A +AL ++M E
Sbjct: 409 VINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFE 468
Query: 75 --IGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLLSRAG 131
+PN T L AC + + G++ Y++ + +P C++D+ ++ G
Sbjct: 469 EDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVS-NCLIDMYAKCG 527
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ +A NM K N V W +L+ G +H EEA D++
Sbjct: 528 SISDARLVFDNMMAK-NEVTWTSLMTGYGMH---GYGEEALGIFDEM 570
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 93/222 (41%), Gaps = 44/222 (19%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM------------------- 41
++H ++ S +N+ V N L+DMY KCG ++ A VF M
Sbjct: 250 QLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIG 309
Query: 42 -------------EERT---VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFI 85
EE+ V TWSA I G A G EAL +M+ GIKPN VT I
Sbjct: 310 RFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLI 369
Query: 86 GLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG-------CMVDLLSRAGFLQEAYE 138
+L C +G + G+ + +Y I + +G ++D+ ++ + A
Sbjct: 370 SVLSGCASVGALMHGKE-IHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARA 428
Query: 139 FIRNMPIKPNGVV-WGALLGGCRVHKNIDLAEEASRQLDQLD 179
++ K VV W ++GG H + + A E ++ + D
Sbjct: 429 MFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEED 470
>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 743
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 163/352 (46%), Positives = 225/352 (63%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H + SG + V N LI +Y KCG LE A ++F EM+ R +W+A++ G A G
Sbjct: 392 QFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFG 451
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A E ++ F M+ GI P+GVTF+G+L AC G V++G +F M E+ I P +HY
Sbjct: 452 KANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHY 511
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DLLSRAG L+EA FI MP P+ + W LL CR++ N+++ + A+ L +L+P
Sbjct: 512 TCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEP 571
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N +++LS+IYA +W+DVA++RK MR +GVKK PG S I VH F A D + P
Sbjct: 572 QNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIFSADDRSSP 631
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+++I+ E L M +GY+P+ S VL D+E+ EK K L HSEKLA+ FGL+ P G
Sbjct: 632 FSDQIYAKLESLYLKMIEEGYVPDMSFVLHDVEKSEKIKMLNHHSEKLAIAFGLLFIPDG 691
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR++KNLRVC DCH A K IS I REI+VRD RFH F+ G CSCGD+W
Sbjct: 692 LQIRVVKNLRVCGDCHNATKYISRITQREILVRDAVRFHLFKDGVCSCGDFW 743
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 85/158 (53%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y ++ ++ NI V + L+DMY KC ++ A VF +M + V +W+AM+ G +G
Sbjct: 291 QIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNG 350
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++EA+ F M I P+ T ++ +C ++ ++EG + F+ G+I +
Sbjct: 351 YSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQ-FHGQALASGLICFVTVS 409
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ L + G L+ A++ M I+ + V W AL+ G
Sbjct: 410 NALITLYGKCGSLEHAHQLFHEMKIR-DEVSWTALVSG 446
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 87/170 (51%), Gaps = 3/170 (1%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N+ NTL+ Y K G L+ +RVF M V +W++++ G A +G E++ +N M+
Sbjct: 70 NLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMML 129
Query: 74 EIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ G + N +TF +L + G+VD GR+ + ++G + +VD+ ++ GF
Sbjct: 130 KDGSVNLNRITFSTMLILSSNRGFVDLGRQ-IHGQIFKFGYQSYLFVGSPLVDMYAKTGF 188
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182
+ +A +P K N VV+ ++ G + I AE+ + + D ++
Sbjct: 189 INDANRIFEEIPEK-NIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSIS 237
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 4/147 (2%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+NI V NT+I ++C + A ++F M E+ +W+ +I GL +G KEA+ F +M
Sbjct: 202 KNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEM 261
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLLSRAG 131
G + TF +L ACG +DEG++ Y + T+Y I ++D+ +
Sbjct: 262 GIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQ--DNIFVGSALLDMYCKCR 319
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ A R M K N + W A+L G
Sbjct: 320 NVKYAEAVFRKMRHK-NVISWTAMLVG 345
>gi|317106614|dbj|BAJ53121.1| JHL07K02.11 [Jatropha curcas]
Length = 514
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 164/351 (46%), Positives = 234/351 (66%), Gaps = 3/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ Q N + + LIDMY KCG +E A+ VF +E V W+++I GLA+HG
Sbjct: 167 LHDLMVQKRIEVNFILSSALIDMYSKCGRIETAKEVFESVERNDVSVWNSLINGLAVHGL 226
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A +A+ F+KM + P+ +TF+G+L AC H G V EGR++F M Y I PQ+EHYG
Sbjct: 227 ALDAMMVFSKMEAENVLPDSLTFLGILKACSHCGLVKEGRKYFDLMENYYSIKPQLEHYG 286
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
MVDLL RAG L EAY I MP++P+ +VW LL CR H+N +L E A + +
Sbjct: 287 AMVDLLGRAGLLDEAYAMITAMPMEPDVIVWRILLSACRTHRNTELGEVA---VANISGP 343
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+G +V+LSNIY RW++ VR++M+ GV+K G S + VVH F AGD++HP+
Sbjct: 344 KSGDYVLLSNIYCSQNRWDNAQEVREMMKEEGVRKRRGKSWFEWEDVVHRFRAGDKSHPE 403
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E ++++ E L+ KL+G++P+T +V++D+ E+EKE+ LY HSEKLAL +G++ T PGT
Sbjct: 404 TEALYKILEGLIQRTKLEGFVPSTELVMMDVSEEEKEENLYHHSEKLALAYGILKTSPGT 463
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI KNLR+C DCH K++S +++R I++RDR RFH F+ GSCSCGDYW
Sbjct: 464 EIRIYKNLRICYDCHNWIKMVSGLLSRVIIIRDRIRFHRFEGGSCSCGDYW 514
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 81/145 (55%), Gaps = 4/145 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N +ID +++ G E A++VF +M +R V TW++MI G +G+ +EAL SF M+ ++
Sbjct: 83 NLVIDSFMRIGEYEIAKKVFCKMPDRDVVTWNSMIGGYVRNGKFEEALRSFQAMLSSNVE 142
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ TF ++ AC +G ++ ++ + + + I ++D+ S+ G ++ A E
Sbjct: 143 PDKFTFASVITACARLGALNHA-QWLHDLMVQKRIEVNFILSSALIDMYSKCGRIETAKE 201
Query: 139 FIRNMPIKPNGV-VWGALLGGCRVH 162
+ ++ N V VW +L+ G VH
Sbjct: 202 VFES--VERNDVSVWNSLINGLAVH 224
>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14330-like [Glycine max]
Length = 650
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 155/340 (45%), Positives = 225/340 (66%), Gaps = 1/340 (0%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ + N+L+DMY KCG + +VF M + + +W+ M+ G +I+GQ EAL F++MI
Sbjct: 311 DVPLLNSLMDMYAKCGEIGYCEKVFDRMHSKDLTSWNTMLAGFSINGQIHEALCLFDEMI 370
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
GI+PNG+TF+ LL C H G EG+R F ++ ++G+ P +EHY C+VD+L R+G
Sbjct: 371 RYGIEPNGITFVALLSGCSHSGLTSEGKRLFSNVMQDFGVQPSLEHYACLVDILGRSGKF 430
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIY 193
EA N+P++P+G +WG+LL CR++ N+ LAE + +L +++P N G +V+LSNIY
Sbjct: 431 DEALSVAENIPMRPSGSIWGSLLNSCRLYGNVALAEVVAERLFEIEPNNPGNYVMLSNIY 490
Query: 194 AEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIF-QMWEKL 252
A A WEDV RVR++M G+KK G S I + +H FVAG + + + ++W +L
Sbjct: 491 ANAGMWEDVKRVREMMALTGMKKDAGCSWIQIKHKIHTFVAGGSSDFRCSAEYKKIWNEL 550
Query: 253 LDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVC 312
+ +K GY+PNT VVL DI E+ K ++ HSE+LA F L+NT G PIRI KNLRVC
Sbjct: 551 SNAVKNLGYVPNTGVVLHDINEEMKAVWVCEHSERLAAVFALINTGAGMPIRITKNLRVC 610
Query: 313 EDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
DCH+ K +S++ R IV+RD NRFH F+ GSCSC DYW
Sbjct: 611 VDCHSWMKAVSKVTRRLIVLRDTNRFHHFENGSCSCKDYW 650
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 118/279 (42%), Gaps = 21/279 (7%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V N L+ +YV+ GC + +VF EM +R V +W+ +I G A G+ E L++F M G
Sbjct: 213 VNNALLGLYVEIGCFDEVLKVFEEMPQRNVVSWNTLIAGFAGQGRVFETLSAFRVMQREG 272
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSM--TTEYGIIPQIEHYGCMVDLLSRAGFLQ 134
+ + +T +L C + + G+ + + + +P + M G+ +
Sbjct: 273 MGFSWITLTTMLPVCAQVTALHSGKEIHGQILKSRKNADVPLLNSLMDMYAKCGEIGYCE 332
Query: 135 EAYEFIRNMPIKPNGVVWGALLGGC----RVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190
+ ++ + + + W +L G ++H+ + L +E R ++P + +LS
Sbjct: 333 KVFDRMHSKDLTS----WNTMLAGFSINGQIHEALCLFDEMIRY--GIEPNGITFVALLS 386
Query: 191 NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKI----- 245
E +M++ GV+ + + VD ++ DE AE I
Sbjct: 387 GCSHSGLTSEGKRLFSNVMQDFGVQPSLEHYACLVD-ILGRSGKFDEALSVAENIPMRPS 445
Query: 246 FQMWEKLLDGMKLKGYIPNTSVV---LLDIEEKEKEKFL 281
+W LL+ +L G + VV L +IE ++
Sbjct: 446 GSIWGSLLNSCRLYGNVALAEVVAERLFEIEPNNPGNYV 484
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 67/160 (41%), Gaps = 5/160 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTV--FTWSAMIQGLAIH 59
+H +Q+ N + LI +Y CG + ARRVF +E+ W AM G + +
Sbjct: 94 LHLLRSQNRVLENPTLKTKLITLYSVCGRVNEARRVFQIDDEKPPEEPVWVAMAIGYSRN 153
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTT-EYGIIPQIE 118
G + EAL + M+ +KP F L AC + GR + + G Q+
Sbjct: 154 GFSHEALLLYRDMLSCCVKPGNFAFSMALKACSDLDNALVGRAIHAQIVKHDVGEADQVV 213
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ ++ L G E + MP + N V W L+ G
Sbjct: 214 N-NALLGLYVEIGCFDEVLKVFEEMPQR-NVVSWNTLIAG 251
>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
[Glycine max]
Length = 1047
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 159/352 (45%), Positives = 223/352 (63%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++G V N LI +Y KCG ++ A R F EM E+ +W+AM+ G + HG
Sbjct: 696 QIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHG 755
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+AL+ F M ++G+ PN VTF+G+L AC H+G VDEG ++F SM +G++P+ EHY
Sbjct: 756 HGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHY 815
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL R+G L A F+ MPI+P+ +V LL C VHKNID+ E A+ L +L+P
Sbjct: 816 ACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEP 875
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+LSN+YA +W R R++M++ GVKK PG S I V+ VH F AGD+ HP
Sbjct: 876 KDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQKHP 935
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+KI++ L + GYIP T+ +L D E ++K HSEKLA+ FGL++
Sbjct: 936 NVDKIYEYLRDLNELAAENGYIPQTNSLLNDAERRQKGPTQIIHSEKLAIAFGLLSLSSS 995
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPI + KNLRVC DCH K +S+I +R IVVRD RFH F+ G CSC DYW
Sbjct: 996 TPIHVFKNLRVCGDCHNWIKYVSKISDRVIVVRDSYRFHHFKGGICSCKDYW 1047
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 86/158 (54%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++GF+ N+ V + LIDMY K G L+ A ++F ++E+ V +W+AMI G A H
Sbjct: 494 QIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHE 553
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EAL F +M + GI + + F + AC + +++G++ ++ G +
Sbjct: 554 KFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQ-IHAQACVSGYSDDLSVG 612
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V L +R G +++AY F + + + W +L+ G
Sbjct: 613 NALVSLYARCGKVRDAY-FAFDKIFSKDNISWNSLISG 649
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 116/269 (43%), Gaps = 39/269 (14%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + GF VCN L+ +Y + G A +VF M +R +++++I GL+ G
Sbjct: 292 QLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQG 351
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +AL F KM +KP+ VT LL AC +G + G++ F+S + G+ I
Sbjct: 352 YSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQ-FHSYAIKAGMSSDIILE 410
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMP----------------------------------IK 146
G ++DL + ++ A+EF + I+
Sbjct: 411 GALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIE 470
Query: 147 PNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGY-HVVLSNIYAEAERWEDVARV 205
PN + ++L C + +DL E+ Q+ + N Y VL ++YA+ + +
Sbjct: 471 PNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLD---HA 527
Query: 206 RKLMRNLGVKKTPGWSSITVDGVVHEFVA 234
K+ R L K W+++ HE A
Sbjct: 528 LKIFRRLKEKDVVSWTAMIAGYAQHEKFA 556
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 8/184 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G+ ++ VCN LID+Y K G L A++VF +++R +W AM+ GL+ G
Sbjct: 191 KIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSG 250
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ F +M G+ P F +L AC + + G + + + + G +E Y
Sbjct: 251 CEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQ-LHGLVLKQGF--SLETY 307
Query: 121 GC--MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQ--LD 176
C +V L SR G A E + N ++ + V + +L+ G D A E ++ LD
Sbjct: 308 VCNALVTLYSRLGNFIPA-EQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLD 366
Query: 177 QLDP 180
L P
Sbjct: 367 CLKP 370
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 94/194 (48%), Gaps = 4/194 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + SG+ ++ V N L+ +Y +CG + A F ++ + +W+++I G A G
Sbjct: 595 QIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSG 654
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL+ F++M + G + N TF + A ++ V G++ ++M + G + E
Sbjct: 655 HCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQ-IHAMIIKTGHDSETEVS 713
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
++ L ++ G + +A MP K N + W A+L G H + A + QL
Sbjct: 714 NVLITLYAKCGNIDDAERQFFEMPEK-NEISWNAMLTGYSQHGHGFKALSLFEDMKQLGV 772
Query: 181 LNNGYHVVLSNIYA 194
L N HV + +
Sbjct: 773 LPN--HVTFVGVLS 784
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 1/158 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + GF + +C L+D+Y+ G L+GA VF EM R + W+ ++
Sbjct: 89 KLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGK 148
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A L F +M++ +KP+ T+ G+L CG ++ T +G +
Sbjct: 149 MAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVC 208
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++DL + GFL A + + K + V W A+L G
Sbjct: 209 NPLIDLYFKNGFLNSAKKVFDGLQ-KRDSVSWVAMLSG 245
>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 160/336 (47%), Positives = 219/336 (65%), Gaps = 2/336 (0%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG-I 77
N+LIDMY KCG L AR++F M RTV +W+AM+ G + HG+ E + F M E +
Sbjct: 251 NSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKV 310
Query: 78 KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGFLQEA 136
KP+ VTF+ +L C H G D+G F M I IEHYGC++DLL RAG ++EA
Sbjct: 311 KPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEA 370
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
+E I+ MP +P +WG+LLG CRVH N ++ E +L +++P N G +V+LSN+YA A
Sbjct: 371 FELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASA 430
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGM 256
RWEDV VR+LM V K PG S I +D +H F A D +HP+ E++F +LL
Sbjct: 431 GRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVRELLVKF 490
Query: 257 KLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCH 316
K GY+P+ S VL D++E++KEK L HSEKLAL FGL++T G P+R++KNLR+C DCH
Sbjct: 491 KESGYVPDQSCVLYDVDEEQKEKILLGHSEKLALAFGLISTSEGVPLRVIKNLRICVDCH 550
Query: 317 AAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
K +S++ R++ +RD+NRFH G CSCGDYW
Sbjct: 551 NFAKFVSKVYGRQVSIRDKNRFHHVAGGICSCGDYW 586
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 112/257 (43%), Gaps = 33/257 (12%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH + ++ + + + LI +Y KC CL AR VF EM ER V +W+AMI G + G
Sbjct: 31 RVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGYSQRG 90
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A EAL F +M+ +PN TF +L +C + GR+ +S + I
Sbjct: 91 FASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQ-IHSHIFKRNYENHIFVG 149
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMP----IKPNGVVWG---------ALLGGCRVHK---- 163
++D+ ++AG + EA +P + ++ G AL CR+ +
Sbjct: 150 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMS 209
Query: 164 -NIDLAEEASRQLDQLDPLNNG-------------YHVVLSNIYAEA-ERWEDVARVRKL 208
N L L L++G ++VVL N + + ++ RK+
Sbjct: 210 SNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKI 269
Query: 209 MRNLGVKKTPGWSSITV 225
N+ V+ W+++ V
Sbjct: 270 FNNMPVRTVISWNAMLV 286
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 100/193 (51%), Gaps = 5/193 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + + +I V ++L+DMY K G + AR VF + ER V + +A+I G A G
Sbjct: 132 QIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 191
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F ++ G+ N VT+ LL A + +D G++ +S + +
Sbjct: 192 LDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQ-VHSHVLRCELPFYVVLQ 250
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH-KNIDLAE--EASRQLDQ 177
++D+ S+ G L A + NMP++ + W A+L G H K I++ + + R+ ++
Sbjct: 251 NSLIDMYSKCGNLNYARKIFNNMPVR-TVISWNAMLVGYSKHGKGIEVVKLFKLMREENK 309
Query: 178 LDPLNNGYHVVLS 190
+ P + + VLS
Sbjct: 310 VKPDSVTFLAVLS 322
>gi|242090555|ref|XP_002441110.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
gi|241946395|gb|EES19540.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
Length = 516
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 154/352 (43%), Positives = 232/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ GF ++ V N L+DMY KC + AR VF + R V +W+ ++ G A HG
Sbjct: 165 QLHGFAITLGFLSSMIVGNALVDMYSKCSDIHSAREVFGGIIVRDVVSWTTILVGEAQHG 224
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +E L +++M+ G+KPN VTF+GL++AC H G V +GR+ F SM EYGI P ++HY
Sbjct: 225 RVEEVLALYDRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGIKPGLQHY 284
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C +DLLSR+G+L EA E I MP +P+ WGALL C+ H + + + L +L P
Sbjct: 285 TCYLDLLSRSGYLSEAEELITTMPYEPDEASWGALLSACKKHNDTQMCLRVADNLLELRP 344
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +++LSN+YA +W+ VA+VRK+M + ++K PG+S I F AG+
Sbjct: 345 KDPSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKEPGYSWIEAGRESRMFHAGEVPLD 404
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
E+I + E+L+ M+ +GY+P+TS V+ D+EE EKE+ L+ HSE+LA+ FG++ +PPG
Sbjct: 405 IGEEITRFLEELVSEMRKRGYVPDTSSVMHDLEENEKEQHLFLHSERLAVAFGILKSPPG 464
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ IR++KNLRVC DCH K ISEI R+I+VRD +RFH F+ G+CSC ++W
Sbjct: 465 SVIRVVKNLRVCGDCHTVMKFISEIAQRKIIVRDASRFHHFEDGNCSCSEFW 516
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/264 (20%), Positives = 104/264 (39%), Gaps = 51/264 (19%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + S + + V ++LIDMY KCG E AR+VF + + W+A++ G A +G
Sbjct: 32 QLHAHFVASPYSADDVVKSSLIDMYCKCGVPEDARKVFDSIGVKNGVVWTALVSGYASNG 91
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA+ F M E G+ G + A + G V G+ ++
Sbjct: 92 CTGEAIDLFRSMPERGLFAWTALISGFVKAGNNTGAV--------------GLFVEMRRD 137
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
G +D + V ++GG + L + L
Sbjct: 138 GVRID----------------------DAFVLATVVGGAAELAALVLGRQLHGFAITLGF 175
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
L++ +V + + + D+ R++ + V+ W++I V G+ H
Sbjct: 176 LSS--MIVGNALVDMYSKCSDIHSAREVFGGIIVRDVVSWTTILV---------GEAQHG 224
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPN 264
+ E++ +++++L L G PN
Sbjct: 225 RVEEVLALYDRML----LAGMKPN 244
>gi|357126224|ref|XP_003564788.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Brachypodium distachyon]
Length = 515
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 154/351 (43%), Positives = 224/351 (63%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + G + V N+L+ MY K G L AR+VF R TW+A+I G A +G+
Sbjct: 165 VHATAVRLGLEPFLSVGNSLVSMYAKTGSLREARKVFDATRLRCPVTWTALIVGYAQNGR 224
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+E+L + +M+ G +P+ VTFIGLL AC H G VD GR F SM ++GI P +HY
Sbjct: 225 GEESLQVYAEMVHSGCRPDYVTFIGLLFACSHAGLVDAGRAHFKSMQADHGITPGPDHYA 284
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+L RAG L EA E + +K + VW ALLG CR H+N +LAE A+ + +LDP
Sbjct: 285 CMVDVLGRAGRLDEAMELLDQSTMKLDATVWKALLGACRTHRNAELAERAAEMVWRLDPT 344
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ +++LSN+Y+ RW DVAR+R LM++ G+ K PG S + GV H F D HP+
Sbjct: 345 DAVPYIMLSNLYSRERRWSDVARIRTLMKSRGIAKEPGCSWVVASGVTHLFYVEDRGHPR 404
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I++ E++++ ++ +G++ +T L D + +EK L HSE+LA+ FGL+ P G
Sbjct: 405 TDEIYRKVEEMMEKVRAEGFVADTDWALQDEAPEGREKGLAHHSERLAVAFGLLALPAGA 464
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P+R+ KNLRVC DCH A K+++++ REI++RD N FH + G CSCGDYW
Sbjct: 465 PVRVFKNLRVCGDCHVAIKMVAKVYGREIILRDSNCFHHMRDGVCSCGDYW 515
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 2/145 (1%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ V N L+D Y K AR +F EM R V TW++++ GLA G AL + M+
Sbjct: 76 HLHVANALVDAYAKLSRGGAARALFDEMPRRDVVTWTSLLTGLARSGSHDAALRVYRDMV 135
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
G++P+ L +C ++ G+ ++ G+ P + +V + ++ G L
Sbjct: 136 ASGVEPDEYVVAAALSSCAGSTTLELGQS-VHATAVRLGLEPFLSVGNSLVSMYAKTGSL 194
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGG 158
+EA + ++ V W AL+ G
Sbjct: 195 REARKVFDATRLR-CPVTWTALIVG 218
>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 631
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 162/351 (46%), Positives = 231/351 (65%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + GF+ N +V LIDMY KCG ++ A +F + E+ V +W+A+I G A+HG
Sbjct: 282 IHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGL 341
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A EAL F +M++ +P+ +TF+G L AC +DEGR + M + I P +EHY
Sbjct: 342 AVEALDLFERMMKEA-QPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYT 400
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL G L EAY+ IR M + P+ VWGALL C+ H N++LAE A +L +L+P
Sbjct: 401 CMVDLLGHCGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPD 460
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +V+L+N+YA++ +WE VAR+R+LM + G+KK S I V V+ F++GD +HP
Sbjct: 461 DSGNYVILANMYAQSGKWEGVARLRQLMIDKGIKKNIACSWIEVKNKVYAFLSGDVSHPN 520
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ I+ ++L M+ GY+P+T V D+EE EK + HSE+LA+ FGL++T PGT
Sbjct: 521 SGAIYAELKRLEGLMREAGYVPDTGSVFHDVEEDEKTDMVCSHSERLAIAFGLISTLPGT 580
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ I KNLR+CEDCH A K IS+I REI VRD NR+H F+ G CSCGDYW
Sbjct: 581 RLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFRHGLCSCGDYW 631
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 127/291 (43%), Gaps = 25/291 (8%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+HE +SG+ R++ V L+DMY KCGC+ AR VF ++ +R W++M+ A +G
Sbjct: 181 IHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGH 240
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
E+L+ +M G++P T + ++ + + + GR + +G +
Sbjct: 241 PDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGRE-IHGFGWRHGFQYNDKVKT 299
Query: 122 CMVDLLSRAGFLQEA---YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++D+ ++ G ++ A +E +R + V W A++ G +H LA EA +++
Sbjct: 300 ALIDMYAKCGSVKVACVLFERLREKRV----VSWNAIITGYAMH---GLAVEALDLFERM 352
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKL----MRNLGVKKTPGWSSITVDGVVHEFVA 234
H+ A R + R L +R+ + T + VD + H
Sbjct: 353 MKEAQPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGH---C 409
Query: 235 G--DETHPQAEKIFQM-----WEKLLDGMKLKGYIPNTSVVLLDIEEKEKE 278
G DE + ++ M W LL+ K G + V L + E E +
Sbjct: 410 GQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPD 460
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 77/158 (48%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Q G N+ + L++ Y C L A +F ++ + +F W+ +I+ A +G
Sbjct: 79 QLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNG 138
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ A++ +++M+E G+KP+ T +L AC + + EG R + G +
Sbjct: 139 PHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEG-RVIHERVIRSGWERDVFVG 197
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ ++ G + +A + + + V+W ++L
Sbjct: 198 AALVDMYAKCGCVVDARHVFDKI-VDRDAVLWNSMLAA 234
>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Cucumis sativus]
Length = 697
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 163/352 (46%), Positives = 226/352 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + +SG + N+ V N LI MY K G + A+ VF M + TW+A+I G + HG
Sbjct: 346 QLHARAEKSGLKGNVMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSHHG 405
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
KEAL+ F M+ G +PN VTFIG++ AC H+ VDEG +F + ++ I+P +EHY
Sbjct: 406 LGKEALSMFQDMMATGERPNYVTFIGVILACAHLKLVDEGFYYFNHLMKQFRIVPGLEHY 465
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+V LLSR+G L EA F+R+ I + V W LL C VHK+ D + + L QL+P
Sbjct: 466 TCIVGLLSRSGRLDEAENFMRSHQINWDVVSWRTLLNACYVHKHYDKGRKIAEYLLQLEP 525
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ G +++LSN++A RW+ V +RKLMR VKK PG S + + V H F + D HP
Sbjct: 526 RDVGTYILLSNMHARVRRWDHVVEIRKLMRERNVKKEPGVSWLEIRNVAHVFTSEDIKHP 585
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+A I++ + LL ++ GY+P+ VL DIE+++K L HSEKLA+ +GLM TP G
Sbjct: 586 EANLIYENVKDLLSKIRPLGYVPDIDNVLHDIEDEQKVDNLSYHSEKLAVAYGLMKTPSG 645
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PI ++KNLR+C+DCH A KLIS++ NR IVVRD NRFH FQ G CSCGDYW
Sbjct: 646 APITVIKNLRMCDDCHTAIKLISKVANRVIVVRDANRFHHFQNGCCSCGDYW 697
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 101/247 (40%), Gaps = 35/247 (14%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM-IEIGI 77
N+LI++YVKC + AR++F M R V +WSA++ G +G E F KM ++ I
Sbjct: 61 NSLINLYVKCDEVSIARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNI 120
Query: 78 KPNGVTFIGLLHACGHMGWVD----------EGRRF----------FYSMTTEYGIIPQI 117
PN + +C +V+ G F YS ++ G QI
Sbjct: 121 FPNEYVIATAISSCDSQMYVEGKQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQI 180
Query: 118 EH---------YGCMVDLLSRAGFLQEAYEFIR---NMPIKPNGVVWGALLGGCRVHKNI 165
+ Y +V+ L + + EA + ++ + I+ N + + C K+I
Sbjct: 181 LYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDI 240
Query: 166 DLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITV 225
L ++ Q+ + D + Y + S+I + +V R L + W+SI
Sbjct: 241 TLGKQVHAQMLKSDIDCDVY--IGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIA 298
Query: 226 DGVVHEF 232
+EF
Sbjct: 299 AYFQNEF 305
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 5/171 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH +S ++ + +++IDMY KCG + R F ++ R V +W+++I +
Sbjct: 245 QVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNE 304
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F+KM I PN T L ++ + + G + ++ + G+ +
Sbjct: 305 FFEEALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQ-LHARAEKSGLKGNVMVG 363
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
++ + ++G + A NM N + W A++ G H + L +EA
Sbjct: 364 NALIIMYFKSGDILAAQSVFSNMTC-CNIITWNAIITG---HSHHGLGKEA 410
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 68/158 (43%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H Y+ +SG + V N LI +Y KC + A ++ + +F ++ ++ GL H
Sbjct: 144 QCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFCYNLVVNGLLQHT 203
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA+ +I GI+ N T++ + C + + G++ M I +
Sbjct: 204 HMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKS-DIDCDVYIG 262
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ + G + F + + N V W +++
Sbjct: 263 SSIIDMYGKCGNVLSGRTFFDRLQSR-NVVSWTSIIAA 299
>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Vitis vinifera]
Length = 993
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 156/352 (44%), Positives = 229/352 (65%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + GF + +TL+DMY +CG LE +R VF + + + W++MI +HG
Sbjct: 642 IHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGC 701
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ A+ F +M + I P+ + F+ +L+AC H G ++EGRRF SM EY + P EHY
Sbjct: 702 GRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYV 761
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL RA L+EAY+F++ M ++P VW ALLG C++H N +L E A+++L ++DP
Sbjct: 762 CLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPE 821
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V++SN+YA RW+DV VR M+ G+KK PG S I V VH F+A D++HPQ
Sbjct: 822 NPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQ 881
Query: 242 AEKIFQMWEKLLDGM-KLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ ++ + + K GY+ T VL + +E+EK + LY HSE+LA+ +G++ TP G
Sbjct: 882 SYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGMLTTPEG 941
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+RI KNLRVC DCH KLIS+ RE+V+RD NRFH F+ G CSCGD W
Sbjct: 942 ASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 993
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER-TVFTWSAMIQGLAIHG 60
VH + + G+ + V N+++ MY KC L GAR++F M E+ V +W++MI + +G
Sbjct: 238 VHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNG 297
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q+ EAL F +M + + PN TF+ L AC ++ +G F ++ + +
Sbjct: 298 QSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQG-MFIHATVLKSSYYINVFVA 356
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + +R G + EA NM + + W ++L G
Sbjct: 357 NALIAMYARFGKMGEAANIFYNMD-DWDTISWNSMLSG 393
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + G ++ + N ++D+Y +CG ++ A R+F +E + V +W++MI +G
Sbjct: 542 IHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGL 600
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A EAL F+ M E G++P+ ++ + +L A + + +G+ + G + +
Sbjct: 601 ANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKE-IHGFLIRKGFVLEGSLAS 659
Query: 122 CMVDLLSRAGFLQEA---YEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ +R G L+++ + FIRN + V+W +++ +H
Sbjct: 660 TLVDMYARCGTLEKSRNVFNFIRNKDL----VLWTSMINAYGMH 699
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 7/148 (4%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ + L+ MY KCGCL A ++F M +T+FTW+AMI +G+ +L + +M
Sbjct: 149 SVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMR 208
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRF---FYSMTTEYGIIPQIEHYGCMVDLLSRA 130
GI + TF +L ACG + + RR + + + G + + +V + ++
Sbjct: 209 VSGIPLDACTFPCILKACGLL----KDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKC 264
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGG 158
L A + MP K + V W +++
Sbjct: 265 NDLNGARQLFDRMPEKEDVVSWNSMISA 292
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +S + N+ V N LI MY + G + A +F M++ +W++M+ G +G
Sbjct: 340 IHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGL 399
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL +++M + G KP+ V I ++ A G G + ++ + G+ ++
Sbjct: 400 YHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQ-IHAYAMKNGLDSDLQVGN 458
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ ++ ++ MP K + V W ++ G
Sbjct: 459 SLVDMYAKFCSMKYMDCIFDKMPDK-DVVSWTTIIAG 494
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 82/171 (47%), Gaps = 6/171 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y+ ++G +++V N+L+DMY K ++ +F +M ++ V +W+ +I G A +G
Sbjct: 440 QIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNG 499
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
AL F ++ GI + + +L AC + + + +S G+ +
Sbjct: 500 SHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKE-IHSYIIRKGLSDLVLQN 558
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
G +VD+ G + A + K + V W +++ C VH LA EA
Sbjct: 559 G-IVDVYGECGNVDYAARMFELIEFK-DVVSWTSMI-SCYVHNG--LANEA 604
>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
Length = 957
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 155/352 (44%), Positives = 229/352 (65%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + GF + +TL+DMY +CG LE +R VF + + + W++MI +HG
Sbjct: 606 IHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGC 665
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ A+ F +M + I P+ + F+ +L+AC H G ++EGRRF SM EY + P EHY
Sbjct: 666 GRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYA 725
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL RA L+EAY+F++ M ++P VW ALLG C++H N +L E A+++L ++DP
Sbjct: 726 CLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPE 785
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V++SN+Y+ RW+DV VR M+ G+KK PG S I V VH F+A D++HPQ
Sbjct: 786 NPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQ 845
Query: 242 AEKIFQMWEKLLDGM-KLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ ++ + + K GY+ T VL + +E+EK + LY HSE+LA+ +G++ TP G
Sbjct: 846 SYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGMLTTPEG 905
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+RI KNLRVC DCH KLIS+ RE+V+RD NRFH F+ G CSCGD W
Sbjct: 906 ASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 957
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER-TVFTWSAMIQGLAIHG 60
VH + + G+ + V N+++ MY KC L GAR++F M E+ V +W++MI + +G
Sbjct: 202 VHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNG 261
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q+ EAL F +M + + PN TF+ L AC ++ +G F ++ + +
Sbjct: 262 QSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQG-MFIHATVLKSSYYINVFVA 320
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + +R G + EA NM + + W ++L G
Sbjct: 321 NALIAMYARFGKMGEAANIFYNMD-DWDTISWNSMLSG 357
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 73/148 (49%), Gaps = 7/148 (4%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ + L+ MY KCGCL A ++F M +T+FTW+AMI +G+ +L + +M
Sbjct: 113 SVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMR 172
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRF---FYSMTTEYGIIPQIEHYGCMVDLLSRA 130
GI + TF +L ACG + + RR+ + + + G + + +V + ++
Sbjct: 173 VSGIPLDACTFPCILKACGLL----KDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKC 228
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGG 158
L A + MP K + V W +++
Sbjct: 229 NDLNGARQLFDRMPEKEDVVSWNSMISA 256
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 127/275 (46%), Gaps = 33/275 (12%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + G ++ + N ++D+Y +CG ++ A R+F +E + V +W++MI +G
Sbjct: 506 IHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGL 564
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A EAL F+ M E G++P+ ++ + +L A + + +G+ + G + +
Sbjct: 565 ANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKE-IHGFLIRKGFVLEGSLAS 623
Query: 122 CMVDLLSRAGFLQEA---YEFIRNMPIKPNGVVWGALLGGCRVH----KNIDL---AEEA 171
+VD+ +R G L+++ + FIRN + V+W +++ +H IDL E+
Sbjct: 624 TLVDMYARCGTLEKSRNVFNFIRNKDL----VLWTSMINAYGMHGCGRAAIDLFRRMEDE 679
Query: 172 SRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGV--- 228
S D + + Y S + E R+ + + ++ P + VD +
Sbjct: 680 SIAPDHIAFVAVLYACSHSGLMNEGRRF-----LESMKYEYQLEPWPEHYACLVDLLGRA 734
Query: 229 -----VHEFVAGDETHPQAEKIFQMWEKLLDGMKL 258
++FV G E P AE +W LL ++
Sbjct: 735 NHLEEAYQFVKGMEVEPTAE----VWCALLGACQI 765
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +S + N+ V N LI MY + G + A +F M++ +W++M+ G +G
Sbjct: 304 IHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGL 363
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL +++M + G KP+ V I ++ A G G + ++ + G+ ++
Sbjct: 364 YHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQ-IHAYAMKNGLDSDLQVGN 422
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ ++ ++ MP K + V W ++ G
Sbjct: 423 SLVDMYAKFCSMKYMDCIFDKMPDK-DVVSWTTIIAG 458
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 82/171 (47%), Gaps = 6/171 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y+ ++G +++V N+L+DMY K ++ +F +M ++ V +W+ +I G A +G
Sbjct: 404 QIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNG 463
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
AL F ++ GI + + +L AC + + + +S G+ +
Sbjct: 464 SHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKE-IHSYIIRKGLSDLVLQN 522
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
G +VD+ G + A + K + V W +++ C VH LA EA
Sbjct: 523 G-IVDVYGECGNVDYAARMFELIEFK-DVVSWTSMI-SCYVHNG--LANEA 568
>gi|218186365|gb|EEC68792.1| hypothetical protein OsI_37341 [Oryza sativa Indica Group]
Length = 960
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 154/351 (43%), Positives = 229/351 (65%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H Y+ + N V L++MY CG L+ A +VF + +R ++AM+ GLA+HG
Sbjct: 610 AHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAVSDRDTRCYNAMLHGLAVHGH 669
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ AL+ ++M G+ +GVT + ++ AC H G VDEG +F M E+GI P+IEHYG
Sbjct: 670 GRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYG 729
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CM+D+LSRAG L A + I M I PN ++ +L+ C +H ++L E+ +L +L+P
Sbjct: 730 CMIDMLSRAGQLNNAEKLIHEMLIVPNAAIYRSLIRACGIHGKLELGEKMIAELMRLEPD 789
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G HV++SN YA RWED + RK M+++G+ K PG S + ++GV+HEF+ GD+THP
Sbjct: 790 DSGNHVLISNFYARTNRWEDAKKARKEMKSMGIDKNPGSSLVDINGVLHEFLVGDKTHPA 849
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+++I+ M E++ + G +TS L D+EE++K L HSE+LA+ F L+ + PG
Sbjct: 850 SKEIYTMVEEIETRLIECGRRSSTSSALFDVEEEDKADTLSYHSERLAIAFALIASNPGA 909
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVC DCH + KL+S + REIV+RDR RFH F+ G CSCGD+W
Sbjct: 910 PIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW 960
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 20 TLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLA---------IHGQAKEALTSFN 70
L+ ++ +CG + RRVF + + W+A++ A A L F
Sbjct: 518 ALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLCARDVACATSAADAILELFV 577
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEG 100
+M+ + I+PN +T + ++ ACG +G V G
Sbjct: 578 RMLSLAIEPNEITLVAVIGACGELGAVSHG 607
>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like, partial [Vitis vinifera]
Length = 825
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 159/353 (45%), Positives = 232/353 (65%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + +SGF N+ + L+D+Y KCG ++ A + F EM +R + +W+AMI A +G
Sbjct: 473 QLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNG 532
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+ L SF +M+ G++P+ V+F+G+L AC H G V+EG F SMT Y + P+ EHY
Sbjct: 533 EAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHY 592
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+VD+L R+G EA + + MPI P+ ++W ++L CR+HKN +LA A+ QL ++
Sbjct: 593 ASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEE 652
Query: 181 LNNGY-HVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
L + +V +SNIYA A +WE+V++V K MR+ GVKK P +S + + H F A D H
Sbjct: 653 LRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCH 712
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
PQ E+I + + L M+ GY P+TS L + +EK K + L HSE+LA+ F L++TP
Sbjct: 713 PQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAFALISTPE 772
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G+PI +MKNLR C DCHAA K+IS+IV REI VRD RFH F+ G CSCGD+W
Sbjct: 773 GSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 825
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + I V N+L+DMY KCG E A +F + R+ W+AMI G
Sbjct: 372 QIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKG 431
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+E L FNKM + + + TF LL A + + G++ +S + G + +
Sbjct: 432 FYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQ-LHSFIIKSGFMSNVFSG 490
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ ++ G +++A + + MP + N V W A++
Sbjct: 491 SALLDVYAKCGSIKDAVQTFQEMPDR-NIVSWNAMISA 527
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 8/149 (5%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+N N +I YVK G L AR++F M ERT TW+ +I G + Q KEA F +M
Sbjct: 81 KNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQM 140
Query: 73 IEIGIKPNGVTFIGLLHAC-GHMGWVDEGRRFFYSMTT--EYGIIPQIEHYGCMVDLLSR 129
G +P+ VTF+ LL C GH + G + T + G ++ +VD +
Sbjct: 141 QRCGTEPDYVTFVTLLSGCNGH----EMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCK 196
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ L A + + MP + + V + A++ G
Sbjct: 197 SNRLDLACQLFKEMP-EIDSVSYNAMITG 224
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 6/151 (3%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G+ + V NTL+D Y K L+ A ++F EM E +++AMI G + G ++A+ F
Sbjct: 179 GYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLF 238
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVD--EGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
+M G+KP TF +L C ++G D G++ +S + + + ++D
Sbjct: 239 VEMQNSGLKPTEFTFAAVL--CANIGLDDIVLGQQ-IHSFVIKTNFVWNVFVSNALLDFY 295
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
S+ + +A + MP + +GV + ++ G
Sbjct: 296 SKHDSVIDARKLFDEMP-EQDGVSYNVIISG 325
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 4/159 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++ F N+ V N L+D Y K + AR++F EM E+ +++ +I G A G
Sbjct: 271 QIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDG 330
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLH-ACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+ K A F ++ F +L A + W E R ++ T +I
Sbjct: 331 KHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDW--EMGRQIHAQTIVTTADSEILV 388
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ ++ G +EA N+ + + V W A++
Sbjct: 389 GNSLVDMYAKCGKFEEAEMIFTNLTHR-SAVPWTAMISA 426
>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
Length = 785
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 159/353 (45%), Positives = 232/353 (65%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + +SGF N+ + L+D+Y KCG ++ A + F EM +R + +W+AMI A +G
Sbjct: 433 QLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNG 492
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+ L SF +M+ G++P+ V+F+G+L AC H G V+EG F SMT Y + P+ EHY
Sbjct: 493 EAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHY 552
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+VD+L R+G EA + + MPI P+ ++W ++L CR+HKN +LA A+ QL ++
Sbjct: 553 ASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEE 612
Query: 181 LNNGY-HVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
L + +V +SNIYA A +WE+V++V K MR+ GVKK P +S + + H F A D H
Sbjct: 613 LRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCH 672
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
PQ E+I + + L M+ GY P+TS L + +EK K + L HSE+LA+ F L++TP
Sbjct: 673 PQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAFALISTPE 732
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G+PI +MKNLR C DCHAA K+IS+IV REI VRD RFH F+ G CSCGD+W
Sbjct: 733 GSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 785
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + I V N+L+DMY KCG E A +F + R+ W+AMI G
Sbjct: 332 QIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKG 391
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+E L FNKM + + + TF LL A + + G++ +S + G + +
Sbjct: 392 FYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQ-LHSFIIKSGFMSNVFSG 450
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ ++ G +++A + + MP + N V W A++
Sbjct: 451 SALLDVYAKCGSIKDAVQTFQEMPDR-NIVSWNAMISA 487
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+N N +I YVK G L AR++F M ERT TW+ +I G + Q KEA F +M
Sbjct: 76 KNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQM 135
Query: 73 IEIGIKPNGVTFIGLLHAC-GH 93
G +P+ VTF+ LL C GH
Sbjct: 136 QRCGTEPDYVTFVTLLSGCNGH 157
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 4/159 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++ F N+ V N L+D Y K + AR++F EM E+ +++ +I G A G
Sbjct: 231 QIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDG 290
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLH-ACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+ K A F ++ F +L A + W E R ++ T +I
Sbjct: 291 KHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDW--EMGRQIHAQTIVTTADSEILV 348
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ ++ G +EA N+ + + V W A++
Sbjct: 349 GNSLVDMYAKCGKFEEAEMIFTNLTHR-SAVPWTAMISA 386
>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Brachypodium distachyon]
Length = 940
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 157/352 (44%), Positives = 231/352 (65%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + F + ++L+DMY CG L GA +VF ++ + + W+AMI +HG
Sbjct: 589 VHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGH 648
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K+A+ F +M++ G+ P+ V+F+ LL+AC H V+EG+ + M + Y + P EHY
Sbjct: 649 GKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYA 708
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL R+G +EAYEFI++MP+KP VVW +LLG CRVHKN +LA A+ +L +L+P
Sbjct: 709 CVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPD 768
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V++SN++AE +W + VR + G++K P S I + VH F D +H
Sbjct: 769 NPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGNNVHTFTTRDNSHRD 828
Query: 242 AEKIFQMWEKLLDGMKLK-GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
AE+I ++ + ++ + GY +T VL D+ E+EK L+RHSE+LA++FGL+NT PG
Sbjct: 829 AERINLKLAEITERLRKEGGYTEDTRSVLHDVSEEEKVDVLHRHSERLAISFGLINTRPG 888
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P+RI KNLRVC DCH KL+S++ +R+IVVRD NRFH F GSCSCGD+W
Sbjct: 889 MPLRIAKNLRVCGDCHEFTKLVSKLFDRDIVVRDANRFHHFSGGSCSCGDFW 940
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 96/188 (51%), Gaps = 9/188 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +SG NI+ CN L+ MY KCG ++ A RVF E++E+ +W++M+ +G
Sbjct: 288 LHAALLKSGSEVNIQ-CNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGL 346
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHY 120
EA+ ++M+ G +P+ + L A GH+GW+ G+ Y++ Q+ +
Sbjct: 347 YAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGN- 405
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG----GCRVHKNIDLAEEASRQLD 176
++D+ + +++ + M IK + + W ++ R + +++ EA ++
Sbjct: 406 -TLMDMYMKCRYIEYSAHVFDRMRIKDH-ISWTTIITCYAQSSRHIEALEIFREAQKEGI 463
Query: 177 QLDPLNNG 184
++DP+ G
Sbjct: 464 KVDPMMIG 471
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 5/165 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE-RTVFTWSAMIQGLAIHG 60
VH + + G R+ V N LI MY KCG L+ A RVF M + R V +W++MI G +G
Sbjct: 186 VHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNG 245
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+AL F M + N T +G+L C + ++ GR ++ + G I+
Sbjct: 246 MFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRE-LHAALLKSGSEVNIQCN 304
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNI 165
+V + ++ G + A R + K + + W ++L C V +
Sbjct: 305 ALLV-MYTKCGRVDSALRVFREIDEK-DYISWNSML-SCYVQNGL 346
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 85/170 (50%), Gaps = 19/170 (11%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y+ ++G ++ V N +ID+Y +CG + + ++F +E++ + TW++MI A G
Sbjct: 488 QLHCYAIRNGLL-DLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSG 546
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG--------RRFFYSMTTEYG 112
EAL F +M ++P+ V + +L A G + + +G RR F+ E
Sbjct: 547 LLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFH---MEEA 603
Query: 113 IIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
I+ +VD+ S G L A + + K + V+W A++ +H
Sbjct: 604 IVSS------LVDMYSGCGSLSGALKVFNAVKCK-DMVLWTAMINATGMH 646
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM---IEIGI 77
L+ MY KCG + AR +F M RTVF+W+A+I G A EAL + M G+
Sbjct: 101 LLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGV 160
Query: 78 KPNGVTFIGLLHACGHMGWVDEGRRF--FYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE 135
P+G T +L A G G +GR + + ++G+ ++ + ++ G L
Sbjct: 161 APDGCTLASVLKASGVEG---DGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDS 217
Query: 136 AYEFIRNMPIKPNGVVWGALLGGC 159
A M + W +++ GC
Sbjct: 218 AMRVFELMHDGRDVASWNSMISGC 241
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y+ + + +V NTL+DMY+KC +E + VF M + +W+ +I A +
Sbjct: 388 VHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSR 447
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHAC 91
EAL F + + GIK + + +L AC
Sbjct: 448 HIEALEIFREAQKEGIKVDPMMIGSILEAC 477
>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Brachypodium distachyon]
Length = 614
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 155/334 (46%), Positives = 220/334 (65%), Gaps = 1/334 (0%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N+LIDMY KCG L +RRVF M +R+ +W+AM+ G HG +E + F M E +K
Sbjct: 282 NSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTE-EVK 340
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ VT + +L C H G VDEG F + E + I HYGC++DLL R+G LQ+A +
Sbjct: 341 PDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALD 400
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAER 198
I +MP +P +WG+LLG CRVH N+ + E +++L ++P N G +V+LSNIYA A
Sbjct: 401 LIEHMPFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGM 460
Query: 199 WEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKL 258
W+DV RVRKLM V K P S I +D V+H F + + HP+ + I +++ +K
Sbjct: 461 WKDVFRVRKLMLENTVTKEPAKSWIILDKVIHTFHSSERFHPRKKDINAKIKEVYVDVKA 520
Query: 259 KGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAA 318
G++P+ S VL D+++++KE+ L HSEKLA+TFGLMNTPPG I++MKNLR+C DCH
Sbjct: 521 AGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIQVMKNLRICVDCHNF 580
Query: 319 FKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
K +S++ REI +RD+NRFH + G+C+CGDYW
Sbjct: 581 AKFVSKVYGREISLRDKNRFHLLKDGACTCGDYW 614
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 89/178 (50%), Gaps = 5/178 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + ++ +R + + LI +YV+CG L+ AR V M ER V +W+AMI G + G
Sbjct: 62 QVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPERNVVSWTAMISGYSQSG 121
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EAL F +M+ G K N T +L +C + + + +S+ + +
Sbjct: 122 RHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQ-VHSLVVKTNFESHMFVG 180
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++D+ ++G +QEA + +P + + V A++ G + + L +EA QL
Sbjct: 181 SSLLDMYGKSGNIQEARKVFDMLP-ERDTVSCTAIISG---YAQLGLDDEALDLFRQL 234
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 8/161 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH ++ F ++ V ++L+DMY K G ++ AR+VF + ER + +A+I G A G
Sbjct: 163 QVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLG 222
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRR---FFYSMTTEYGIIPQI 117
EAL F ++ G++ N VTF LL + + ++ G++ + I+ Q
Sbjct: 223 LDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQ- 281
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ S+ G L + NMP + + + W A+L G
Sbjct: 282 ---NSLIDMYSKCGKLLYSRRVFDNMP-QRSAISWNAMLMG 318
>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
Length = 533
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 157/354 (44%), Positives = 228/354 (64%), Gaps = 3/354 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAI 58
+ H++ S + + N L+DMY KCG LE A +F I ER +W+ +I G +
Sbjct: 181 KFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGM 240
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
HG KEAL F++M E G++PN TF +L AC H G +DEGR+ F M + + +
Sbjct: 241 HGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMK-RLSVTLEDK 299
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
H+ C+VD+L RAG LQEA++ I+ MP P+ VWGALL C++H N++L + A+ L QL
Sbjct: 300 HHACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLLQL 359
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
+P + GY+V++SNIYA + +W++V ++R+ M+N G+KK +S I + F D+
Sbjct: 360 EPNHTGYYVLMSNIYAASNKWKEVWKLRQDMKNKGLKKPAAFSMIEYGKDILGFHTADQE 419
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
+P ++++ E L MK+ GY+P+ S L D+EE++KE+ L HSEKLA+ FG++
Sbjct: 420 NPYRHEVYKKMESLAIEMKMAGYVPDLSCALHDVEEEDKERMLNYHSEKLAVAFGVLKID 479
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PG IR+ KNLRVC DCH+AFK IS I R+I+VRD NRFH FQ G+CSC DYW
Sbjct: 480 PGMVIRVTKNLRVCNDCHSAFKYISHIYQRKIIVRDANRFHHFQGGTCSCKDYW 533
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 86/162 (53%), Gaps = 2/162 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y+ + + V N+++ M+ KCG E AR VF M ER V +W++M+ G +GQ
Sbjct: 81 VHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMMMERDVISWNSMLSGYTQNGQ 140
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A EAL F++M + +P VT + ++ AC ++G+ GR+ F+ + +
Sbjct: 141 ATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGRK-FHDFIVDSRMEIDTNLSN 199
Query: 122 CMVDLLSRAGFLQEAYEFIRNM-PIKPNGVVWGALLGGCRVH 162
++D+ ++ G L++A + + P + N W L+ G +H
Sbjct: 200 ALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMH 241
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
Query: 24 MYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM-IEIGIKPNGV 82
MY KCG R++F EM + + W+AMI + +EAL F KM E G+ + +
Sbjct: 1 MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSI 60
Query: 83 TFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRN 142
+ + A G +G V + +I ++ ++ + ++ G ++A + +
Sbjct: 61 AVVSVASAVGQLGDVKNAHT-VHGYAFRKSLIEELCVGNSILAMHTKCGNTEKA-RLVFD 118
Query: 143 MPIKPNGVVWGALLGG 158
M ++ + + W ++L G
Sbjct: 119 MMMERDVISWNSMLSG 134
>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 691
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 154/352 (43%), Positives = 230/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y + GF ++L+DMY KCG +E A+ V + + +W+++I G A +G
Sbjct: 340 QVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNG 399
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q EAL F+ +++ G KP+ VTF+ +L AC H G V++G FFYS+T ++ + +HY
Sbjct: 400 QPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHY 459
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL+R+G ++ I MP+KP+ +W ++LGGC + NIDLAEEA+++L +++P
Sbjct: 460 TCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEP 519
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N +V ++NIYA A +WE+ ++RK M+ +GV K PG S + H F+A D +HP
Sbjct: 520 ENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHP 579
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+I + +L MK +GY+P TS+VL D+E+++KE+ L HSEKLA+ F +++T G
Sbjct: 580 MYNQIVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEG 639
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T I++ KNLR C DCH A K IS I R+I VRD RFHCF+ G CSCGDYW
Sbjct: 640 TAIKVFKNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 103/196 (52%), Gaps = 10/196 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + ++G + + ++L+DMY KCGC++ AR +F ++ E+ V +W++MI +
Sbjct: 240 IHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSR 299
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+E + F++++ +PN TF G+L+AC + + G++ + T G P
Sbjct: 300 WREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQ-VHGYMTRVGFDPYSFASS 358
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+VD+ ++ G ++ A + P KP+ V W +L+GGC + D EA + D L L
Sbjct: 359 SLVDMYTKCGNIESAKHVVDGCP-KPDLVSWTSLIGGCAQNGQPD---EALKYFDLL--L 412
Query: 182 NNGY---HVVLSNIYA 194
+G HV N+ +
Sbjct: 413 KSGTKPDHVTFVNVLS 428
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VHE+ SGF I + N L+ MY KCG L AR+VF EM R + +W+ M+ G A G
Sbjct: 106 KVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVG 165
Query: 61 QAKEALTSFNKMIE 74
+EA F++M E
Sbjct: 166 LLEEARKLFDEMTE 179
>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Cucumis sativus]
Length = 720
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 163/342 (47%), Positives = 220/342 (64%), Gaps = 4/342 (1%)
Query: 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
I V N LI MY KCG L A+ +F M E ++++MI G A HG ++L F +M+E
Sbjct: 379 ISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLE 438
Query: 75 IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ 134
+G P +TFI +L AC H G V++G+ +F M ++GI P+ H+ CM+DLL RAG L
Sbjct: 439 MGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLS 498
Query: 135 EAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYA 194
EA I +P P W ALLG CR+H N++LA +A+ +L QLDPLN +V+L+NIY+
Sbjct: 499 EAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYS 558
Query: 195 EAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLD 254
+ R +D A VRKLMR+ GVKK PG S I V+ +H FVA D HP +KI + E+++
Sbjct: 559 DNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMR 618
Query: 255 GMKLKGYIPNTSVVLLD----IEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLR 310
+K GY P L+ + ++E+E L HSEKLA++FGLM+T G PI + KNLR
Sbjct: 619 KIKKVGYTPEVRSALVGGDDRVWQREEELRLGHHSEKLAVSFGLMSTREGEPILVFKNLR 678
Query: 311 VCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+C DCH A K ISE+V REI VRD +RFHCF+ G CSCG YW
Sbjct: 679 ICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQCSCGGYW 720
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 126/269 (46%), Gaps = 21/269 (7%)
Query: 8 QSGFRRNIRVCNTLIDMYVKC-GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ-AKEA 65
+SG+ +N V + LID+Y KC GC+ R+VF E+ + W+ MI G +++ + EA
Sbjct: 268 KSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEA 327
Query: 66 LTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP-QIEHYGCMV 124
L F ++ +G +P+ + + ++ AC +M +GR+ + + + I +I ++
Sbjct: 328 LECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQ-VHGLALKLDIPSNRISVNNALI 386
Query: 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASRQLDQ-LD 179
+ S+ G L++A MP + N V + +++ G H +++ L + R L+
Sbjct: 387 AMYSKCGNLRDAKTLFDTMP-EHNTVSYNSMIAGYAQHGMGFQSLHLFQ---RMLEMGFT 442
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRN-LGVKKTPGWSSITVD-----GVVHEFV 233
P N + VL+ A R ED +M+ G++ G S +D G + E
Sbjct: 443 PTNITFISVLAAC-AHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAE 501
Query: 234 AGDETHPQAEKIFQMWEKLLDGMKLKGYI 262
ET P F W LL ++ G +
Sbjct: 502 RLIETIPFDPGFF-FWSALLGACRIHGNV 529
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 5/151 (3%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N+ NTLI Y K +E A ++F EM + +++ +I A G + A F +M
Sbjct: 73 NVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMR 132
Query: 74 EIGIKPNGVTFIGLLHACG-HMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E + +G T G++ ACG ++G + R ++++ G+ + ++ S+ GF
Sbjct: 133 EAFLDMDGFTLSGIITACGINVGLI----RQLHALSVVTGLDSYVSVGNALITSYSKNGF 188
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHK 163
L+EA + + V W +++ H+
Sbjct: 189 LKEARRIFHWLSEDRDEVSWNSMVVAYMQHR 219
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 5/178 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM-EERTVFTWSAMIQGLAIH 59
++H S +G + V N LI Y K G L+ ARR+F + E+R +W++M+ H
Sbjct: 159 QLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQH 218
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+ +AL + +M G+ + T +L A ++ + G +F + Q H
Sbjct: 219 REGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSG--YHQNSH 276
Query: 120 YGC-MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNI-DLAEEASRQL 175
G ++DL S+ G + + P+ V+W ++ G +++++ D A E RQL
Sbjct: 277 VGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQL 334
>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
Length = 743
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 158/344 (45%), Positives = 224/344 (65%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
SG I V N LI +Y KCG +E + ++F EM R +W+A++ G A G+A E +
Sbjct: 400 SGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDL 459
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
F +M+ G+KP+ VTFI +L AC G V+ G+++F SM ++GIIP +HY CM+DL
Sbjct: 460 FERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFG 519
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVV 188
RAG L+EA FI MP P+ + W LL CR++ N ++ + A+ L +LDP N +++
Sbjct: 520 RAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYIL 579
Query: 189 LSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQM 248
LS+IYA +W +VA++R+ MR G +K PG+S I V+ F A D++ P +++I+
Sbjct: 580 LSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAE 639
Query: 249 WEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKN 308
EKL M +GY+P+ S VL D+E+ EK K L HSEKLA+ FGL+ P G PIR++KN
Sbjct: 640 LEKLNHKMIEEGYVPDASSVLHDVEDSEKMKMLNHHSEKLAIAFGLLFIPHGLPIRVVKN 699
Query: 309 LRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
LRVC DCH A K IS+I REI+VRD RFH F+ G+CSCGD+W
Sbjct: 700 LRVCGDCHNATKYISKISQREILVRDAVRFHLFKDGTCSCGDFW 743
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 98/194 (50%), Gaps = 10/194 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +SG+ N+ V + L+DMY KC + A VF M + V +W+AM+ G +G
Sbjct: 292 IHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGF 351
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++EA+ F M GI+P+ T ++ +C ++ ++EG + F+ G+I I
Sbjct: 352 SEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQ-FHCQALVSGLISFITVSN 410
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC----RVHKNIDLAEEASRQLDQ 177
++ L + G ++++ + M + + V W AL+ G + ++ IDL E R L Q
Sbjct: 411 ALITLYGKCGSIEDSNQLFDEMSFR-DEVSWTALVSGYAQFGKANETIDLFE---RMLVQ 466
Query: 178 -LDPLNNGYHVVLS 190
L P + VLS
Sbjct: 467 GLKPDAVTFIAVLS 480
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 5/161 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ + NT+I ++ G ++ ++R+F M+ER +W+ MI GL +G EA+ F M
Sbjct: 202 RNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDM 261
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ G+ + TF +L ACG + + EG+ +++ G + +VD+ +
Sbjct: 262 RQEGMAMDQYTFGSVLTACGGLRALKEGKE-IHTLIIRSGYNHNVFVGSALVDMYCKCRS 320
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR 173
++ A + M K N V W A+L G + +EEA R
Sbjct: 321 VRYAEAVFKRMANK-NVVSWTAMLVG---YGQNGFSEEAVR 357
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 3/141 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGI- 77
NT++ Y K G L + +F M R +W+++I G +G EA+ ++N M++ G+
Sbjct: 75 NTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVL 134
Query: 78 KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAY 137
N +TF +L G VD GR+ + ++G + +VD+ ++ G + A
Sbjct: 135 NLNRITFSTMLLLVSSQGCVDLGRQ-IHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVAS 193
Query: 138 EFIRNMPIKPNGVVWGALLGG 158
+ + + N V++ ++ G
Sbjct: 194 QVFDEVQ-ERNVVMYNTMITG 213
>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Brachypodium distachyon]
Length = 814
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 155/352 (44%), Positives = 226/352 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y +SG ++ + L+DMY KCGCL+ A + F EM ER +W+A+I A +G
Sbjct: 463 QLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYG 522
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
QAK A+ F M+ G KP+ VTF+ +L AC H G +E ++F M EYGI P EHY
Sbjct: 523 QAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHY 582
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C++D L R G + E + MP + + ++W ++L CR H N DLA A+ +L +
Sbjct: 583 SCVIDTLGRVGRFDKVQEMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFSMGS 642
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +V+LSNI+A+A +WED A V+K+MR+ G++K G+S + V V+ F + D+T+P
Sbjct: 643 TDATPYVILSNIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVEVKHKVYSFSSNDQTNP 702
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+I E+L M +GY P+TS L +++ K + L HSE+LA+ F L+NTPPG
Sbjct: 703 MITEIKDELERLYKEMDKQGYKPDTSCTLQQVDDDIKLESLKYHSERLAIAFALINTPPG 762
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPIR+MKNL C DCH+A K++S+IVNR+I+VRD +RFH F+ G CSCGDYW
Sbjct: 763 TPIRVMKNLSACVDCHSAIKMMSKIVNRDIIVRDSSRFHHFKDGFCSCGDYW 814
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 2/149 (1%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G V N LIDMY KCG L+ A+ FI ++T +W+AMI G +GQ +EAL F
Sbjct: 371 GLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLF 430
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
M G+ P+ TF + A ++ + GR+ +S G + + ++D+ ++
Sbjct: 431 CGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQ-LHSYLIRSGHMSSVFSGSALLDMYTK 489
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
G L EA + MP + N + W A++
Sbjct: 490 CGCLDEALQTFDEMPER-NSISWNAVISA 517
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 14/163 (8%)
Query: 2 VHEYSNQSGF-RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+H ++ + G N+ VCNTL+D Y K G L ARRVF EM R T++AM+ G + G
Sbjct: 161 LHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEG 220
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL F M G+ TF +L +G + GR+ +G++ +
Sbjct: 221 SHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQV-------HGLVARATSS 273
Query: 121 GCMV-----DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
V D S+ L E + M I+ + V + ++ G
Sbjct: 274 NVFVNNSLLDFYSKCDCLDEMKKLFHEM-IERDNVSYNVMIAG 315
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 2/146 (1%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N+ V N+L+D Y KC CL+ +++F EM ER +++ MI G A + A L F +M
Sbjct: 274 NVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQ 333
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
+ + + LL G + + G++ ++ G+ + ++D+ S+ G L
Sbjct: 334 SLSFDRQALPYASLLSVAGSVPHIGIGKQ-IHAQLVLLGLSSEDLVGNALIDMYSKCGML 392
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGC 159
A N K GV W A++ GC
Sbjct: 393 DAAKTNFINKNDK-TGVSWTAMITGC 417
>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
Length = 645
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 156/352 (44%), Positives = 233/352 (66%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + GF ++ +L+DMY K G + A +F ++ R + +W+AMI G +HG
Sbjct: 294 LHGYGWRRGFGSQDKLKTSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGH 353
Query: 62 AKEALTSFNKM-IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A A F++M E + P+ +TF+G+L AC H G V E + F M T Y I P ++HY
Sbjct: 354 ADHAFELFSRMRSEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQHY 413
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VD+L +G +EA + I+ M +KP+ +WGALL GC++HKN++LAE A ++L +L+P
Sbjct: 414 TCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALQKLIELEP 473
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ G +V+LSNIYAE+ +WE+ ARVRKLM N G+KK S I + G H F+ GD +HP
Sbjct: 474 EDAGNYVLLSNIYAESGKWEEAARVRKLMTNRGLKKIIACSWIELKGKFHGFLVGDASHP 533
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+++ I++ E+L + GY+P+T+ V ++E+ EK ++ HSE+LA+ FGL++TPP
Sbjct: 534 RSDDIYEELERLEGLISQTGYVPDTTPVFHNVEDDEKRNMVWGHSERLAIAFGLISTPPR 593
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T + + KNLRVCEDCH KLIS+I REI++RD NR+H F G CSC D+W
Sbjct: 594 TKLLVTKNLRVCEDCHVVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 645
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 2/169 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+ ++ + ++ VC LIDMY KCGC++ A VF + R W++MI +G+
Sbjct: 193 VHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQNGR 252
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EALT M GI P T + + A + GR + G Q +
Sbjct: 253 PAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRE-LHGYGWRRGFGSQDKLKT 311
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
++D+ +++G++ A+ + + + W A++ G +H + D A E
Sbjct: 312 SLLDMYAKSGWVMVAHVLFEQL-LHRELISWNAMICGFGMHGHADHAFE 359
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER-TVFTWSAMIQGLAIHGQAKEALT 67
SG + + L+D+Y CG + ARRVF EM + VF W+ +I+ A G + A+
Sbjct: 97 SGTGLDAVLATRLVDLYASCGHVSLARRVFDEMPNQGNVFLWNVLIRAYARDGPCEAAIE 156
Query: 68 SFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGC--M 123
+ M+ G +KP+ T+ +L AC + + GR M T + + + C +
Sbjct: 157 LYRAMLAYGSMKPDNFTYPPVLKACAALLDLSAGREVHDRVMRTNWA----TDVFVCTGL 212
Query: 124 VDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
+D+ ++ G + EA+ + I+ + VW +++ C
Sbjct: 213 IDMYAKCGCMDEAWAVFNDTTIR-DAAVWNSMIAAC 247
>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Glycine max]
Length = 854
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 160/342 (46%), Positives = 225/342 (65%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
F +++ + N L+DMY KCG LE A+ +F M ++ V +WS MI GLA +G + EAL F
Sbjct: 513 FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFE 572
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
M G KPN +T +G+L AC H G V+EG +F SM YGI P EHYGCM+DLL RA
Sbjct: 573 SMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRA 632
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190
L + + I M +P+ V W LL CR +N+DLA A++++ +LDP + G +V+LS
Sbjct: 633 EKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAYVLLS 692
Query: 191 NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWE 250
NIYA ++RW DVA VR+ M+ G++K PG S I V+ +H F+ GD++HPQ ++I +
Sbjct: 693 NIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKSHPQIDEINRQLN 752
Query: 251 KLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLR 310
+ + + GY+P+T+ VL D+E +++E L HSEKLA+ FG+M+ P IRI KNL+
Sbjct: 753 QFICRLAGAGYVPDTNFVLQDLEGEQREDSLRYHSEKLAIVFGIMSFPKEKTIRIWKNLK 812
Query: 311 VCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+C DCH KLI+E+ R IV+RD R+H FQ G CSCGDYW
Sbjct: 813 ICGDCHKFAKLIAELEQRHIVIRDPIRYHHFQDGVCSCGDYW 854
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 5/168 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH + +G+ + N LI+MYVK LE A+ +F +M ER V +W+ MI +
Sbjct: 306 RVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQ 365
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A+ M G+ PN TF +L AC + + + +S + G+ +
Sbjct: 366 LNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDLKQ----LHSWIMKVGLESDVFVR 421
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
++D+ S+ G L EA + R M + + VVW +++ H + D A
Sbjct: 422 SALIDVYSKMGELLEALKVFREM-MTGDSVVWNSIIAAFAQHSDGDEA 468
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 6/159 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G ++ V + LID+Y K G L A +VF EM W+++I A H
Sbjct: 404 QLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHS 463
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRR-FFYSMTTEYGIIPQIEH 119
EAL + M +G + T +L AC + ++ GR+ + + + +I
Sbjct: 464 DGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLKFDQDLILN--- 520
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ + G L++A +FI N K + + W ++ G
Sbjct: 521 -NALLDMYCKCGSLEDA-KFIFNRMAKKDVISWSTMIAG 557
>gi|356565103|ref|XP_003550784.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g47530-like [Glycine max]
Length = 515
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 156/353 (44%), Positives = 222/353 (62%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H Y + G+ + + N LI MY +CGCL+ A VF + V +WSAMI GLA++G
Sbjct: 163 RIHGYMMEHGYGGALNLSNALISMYSRCGCLDKAXEVFKGTGNKNVVSWSAMISGLAMNG 222
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR-RFFYSMTTEYGIIPQIEH 119
+EA+ SF +M+ IGI+P+ T G+L AC + G VDEG FF M+ E+G+ P + H
Sbjct: 223 YGREAIESFEEMLRIGIRPDDQTLTGVLSACSYSGMVDEGMMSFFDRMSREFGVTPNVHH 282
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YGCMVDLL AG L +A + I +M KP+ W LLG CR+H ++ L E L +L
Sbjct: 283 YGCMVDLLGHAGLLDKAXQLIMSMVEKPDSTTWRTLLGACRIHGHVTLGERVIGHLIELK 342
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
G HV+L NIY+ A WE VA VRKLM+N ++ TPG S+I + GVVHEFV D +H
Sbjct: 343 AQEAGDHVLLLNIYSSAGHWEKVAEVRKLMKNKSIQTTPGCSTIELKGVVHEFVVDDVSH 402
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
+ +I++ +++ +++ GY+ S L +++KEK L HSEKLA+ FG++ TPP
Sbjct: 403 TRNHEIYETLDEINHQLRIAGYVVELSSELHKMDDKEKGYVLSHHSEKLAIAFGVLATPP 462
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GT +R+ NLR+C DC K S + N ++++RD NRFH F+ G CSC +YW
Sbjct: 463 GTTLRVANNLRICVDCFNFLKHFSGVYNGDVILRDHNRFHHFRGGCCSCSNYW 515
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 4/160 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + G + + + ++D+Y C A +VF EM R W+ MI +
Sbjct: 60 QVHCNIFKYGHQWDTLLLTAVMDLYSXCQRGGDACKVFDEMPPRDTVAWNVMISCCIRNN 119
Query: 61 QAKEALTSFNKMIEIGIK--PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
+ ++AL+ F+ + K P+ VT + LL AC H+ ++ G R + E+G +
Sbjct: 120 RTRDALSLFDVLQNSSYKCEPDDVTCLLLLQACAHLYALEFGER-IHGYMMEHGYGGALN 178
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + SR G L +A E + K N V W A++ G
Sbjct: 179 LSNALISMYSRCGCLDKAXEVFKGTGNK-NVVSWSAMISG 217
>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
Length = 504
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 155/352 (44%), Positives = 229/352 (65%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +S R ++ V N+L+DMYVKCG ++ RR+F M + + +W+ M+ G AI+G
Sbjct: 153 IHAQIVKSARRPDVLVLNSLVDMYVKCGVVDYGRRLFDGMRSKDLTSWNTMLTGYAINGY 212
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ A+ FN+M GI+P+ VTFI LL C H G ++G++ F+ M ++G+ P +EHY
Sbjct: 213 MRVAMDLFNEMASCGIRPDDVTFIALLSGCSHAGLTEDGQKLFHRMEMDFGVSPSLEHYA 272
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VD+L RAG + A ++NMP+K +G +WG+LL CR+H + LAE + +L +L+P
Sbjct: 273 CLVDMLGRAGRIDAALVVVKNMPMKTSGSIWGSLLNSCRLHNEVPLAEAIANRLFELEPY 332
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDE-THP 240
N G +V+LSNIYA A W+ V VR++M+ ++K G S I V +H FVAG
Sbjct: 333 NPGNYVMLSNIYANAGMWDSVNMVREMMQTRRIRKEAGCSWIQVKNKIHSFVAGGGFEFR 392
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+++ ++W KL + M+ GYIPNT VVL D+ E+ K ++ HSE+LA F L++T G
Sbjct: 393 NSDEYKKIWNKLREAMEEFGYIPNTDVVLHDVNEETKAMWVCGHSERLATVFSLIHTAAG 452
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH+ K++S + R IV+RD NRFH F+ G+CSC DYW
Sbjct: 453 MPIRITKNLRVCVDCHSWIKIVSRVTGRVIVLRDTNRFHHFKEGACSCNDYW 504
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 73/181 (40%), Gaps = 43/181 (23%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V N L+ +Y +C C +VF +M ER V +W+++I G + EAL F +M G
Sbjct: 67 VNNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQREG 126
Query: 77 IKPNGVTFIGLLHACGHM-----------------------------------GWVDEGR 101
+ + VT +L C + G VD GR
Sbjct: 127 MGFSWVTLTTILPICARVTALLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVVDYGR 186
Query: 102 RFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGG 158
R F M ++ + + M+ + G+++ A + M I+P+ V + ALL G
Sbjct: 187 RLFDGMRSK-----DLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTFIALLSG 241
Query: 159 C 159
C
Sbjct: 242 C 242
>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Brachypodium distachyon]
Length = 706
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 160/353 (45%), Positives = 233/353 (66%), Gaps = 3/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + F ++ + LI MY+KCG L+ A+RVF E + V W++MI G A HG
Sbjct: 355 LHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHGL 414
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL F+ + + P+G+T+IG+L AC + G V EGR F SM I HY
Sbjct: 415 GEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHYS 474
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG + EA + I NMP++P+ ++WGAL+G CR+HKN ++AE A+++L +L+P
Sbjct: 475 CMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMHKNAEIAEVAAKKLLELEPG 534
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDE-THP 240
+ G +V+LS+IY RWED + +RK + + + K+PG S I + +VH F +GD +HP
Sbjct: 535 SAGPYVLLSHIYTSTGRWEDASDMRKFISSRNLNKSPGCSWIEYNKMVHLFTSGDVLSHP 594
Query: 241 QAEKIFQMWEKLLDGMKLK-GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
+ I M E+ LDG+ ++ GY + S VL D++E++K + L HSE+ A+ +GL+ P
Sbjct: 595 EHAIILNMLEE-LDGLLMESGYSADGSFVLHDVDEEQKAQSLRYHSERQAVAYGLLKVPA 653
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIR+MKNLRVC DCH+A KLI++I +REI++RD NRFH F+ G CSC DYW
Sbjct: 654 GMPIRVMKNLRVCGDCHSAIKLITKITSREIILRDANRFHHFKDGLCSCRDYW 706
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 5/164 (3%)
Query: 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
+ CN ++ + + G ++ A+ +F M R TWSAMI+ + EAL++F +M+
Sbjct: 267 VAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLC 326
Query: 75 IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ 134
GI+PN +FI +L C + D GR +M + ++ + + G L
Sbjct: 327 RGIRPNYTSFISILTVCAALATADYGRELHAAM-LRCSFDTDVFAVSALITMYIKCGNLD 385
Query: 135 EAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+A + + NM + V+W +++ G H L EEA D L
Sbjct: 386 KA-KRVFNMFEPKDVVMWNSMITGYAQHG---LGEEALGIFDDL 425
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 12/162 (7%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+RN+ +I Y + G + AR++F M +R +W+AM+ G G ++A FN
Sbjct: 202 KRNVVSWTAMISGYAQNGKVILARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNA 261
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M + + +G G G VD + F M + M+ + +
Sbjct: 262 MPDHPVAACNAMMVGF----GQHGMVDAAKAMFERMCAR-----DDGTWSAMIKVYEQNE 312
Query: 132 FLQEAYEFIRNM---PIKPNGVVWGALLGGCRVHKNIDLAEE 170
FL EA R M I+PN + ++L C D E
Sbjct: 313 FLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRE 354
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 10/152 (6%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
+L+ YV+ G L A R+F +M ER T++ ++ G G+ EA F++M + +
Sbjct: 116 TSLLRGYVRHGLLADAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDV- 174
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
V +L G + E R F M + + M+ ++ G + A +
Sbjct: 175 ---VARTAMLSGYCQAGRITEARALFDEMPKR-----NVVSWTAMISGYAQNGKVILARK 226
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
MP + N V W A+L G +++ AE+
Sbjct: 227 LFEVMPDR-NEVSWTAMLVGYIQAGHVEDAED 257
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 97/229 (42%), Gaps = 15/229 (6%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN L+ ++ G + AR++F EM ++ V +AM+ G G+ EA F++M
Sbjct: 141 RNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDEM 200
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
K N V++ ++ G V R+ F M + + M+ +AG
Sbjct: 201 ----PKRNVVSWTAMISGYAQNGKVILARKLFEVMPDRNEV-----SWTAMLVGYIQAGH 251
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNI 192
+++A + MP P A++ G H +D A+ +++ ++G + +
Sbjct: 252 VEDAEDLFNAMPDHPVAAC-NAMMVGFGQHGMVDAAKA---MFERMCARDDGTWSAMIKV 307
Query: 193 YAEAE-RWEDVARVRKLM-RNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
Y + E E ++ R+++ R + T S +TV + G E H
Sbjct: 308 YEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELH 356
>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Brachypodium distachyon]
Length = 750
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 159/344 (46%), Positives = 222/344 (64%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
SG R + V N L+ +Y KCG +E A R+F EM +W+A++ G A G+AKE +
Sbjct: 407 SGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDL 466
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
F KM+ G+KP+GVTFIG+L AC G VD+GR +F+SM ++ I+P +HY CM+DL S
Sbjct: 467 FEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYS 526
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVV 188
R+G+L++A EFI+ MP P+ W LL CR+ ++++ + A+ L +LDP N +V+
Sbjct: 527 RSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVL 586
Query: 189 LSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQM 248
L +++A W DVA++R+ MR+ VKK PG S I VH F A D++HP + I++
Sbjct: 587 LCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSRTIYEK 646
Query: 249 WEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKN 308
+ L M +GY P+ S VL D+ + EK L HSEKLA+ FGL+ PP PIRI+KN
Sbjct: 647 LQWLNSKMVEEGYKPDVSSVLHDVADAEKVHMLSHHSEKLAIAFGLIFVPPEMPIRIVKN 706
Query: 309 LRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
LRVC DCH A K IS+I R+I+VRD RFH F G CSCGD+W
Sbjct: 707 LRVCVDCHNATKFISKITGRDILVRDAVRFHKFSNGICSCGDFW 750
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 6/174 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y ++ + N+ V + L+DMY KC + A VF M + + +W+AMI G +G
Sbjct: 298 QIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNG 357
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ F++M GIKP+ T ++ +C ++ ++EG + F+ + G+ P +
Sbjct: 358 CGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLRPYVTVS 416
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC----RVHKNIDLAEE 170
+V L + G +++A+ M + V W AL+ G + + IDL E+
Sbjct: 417 NALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWTALVMGYAQFGKAKETIDLFEK 469
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 2/146 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+N+ +CNT+I ++C + AR +F +EER TW+ M+ GL +G EAL F +M
Sbjct: 209 KNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRM 268
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
G+ + TF +L ACG + ++EG++ ++ T + +VD+ S+
Sbjct: 269 RAEGVGIDQYTFGSILTACGALAALEEGKQ-IHAYITRTCYEDNVFVGSALVDMYSKCRS 327
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGG 158
++ A R M K N + W A++ G
Sbjct: 328 VRLAEAVFRRMMWK-NIISWTAMIVG 352
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 45/230 (19%), Positives = 96/230 (41%), Gaps = 7/230 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ N+L+ + G + R+F + +R +++A++ G + G A ++ +
Sbjct: 75 RNLVTGNSLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVAL 134
Query: 73 I--EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
+ E G++P+ +T G++ +G GR+ + G +VD+ ++
Sbjct: 135 LRDEAGVRPSRITMSGVVMVASALGDRALGRQ-VHCQILRLGFGAYAFTGSPLVDMYAKV 193
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVV-L 189
G + +A M K N V+ ++ G K + A +++ D + V L
Sbjct: 194 GPIGDARRVFDEMEGK-NVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGL 252
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
+ E+E + R+R +G+ + S +T G + G + H
Sbjct: 253 TQNGLESEALDVFRRMRA--EGVGIDQYTFGSILTACGALAALEEGKQIH 300
>gi|302786876|ref|XP_002975209.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
gi|300157368|gb|EFJ23994.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
Length = 805
Score = 331 bits (848), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 152/340 (44%), Positives = 219/340 (64%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ + N ++ MY +CG L AR F M R +W+AM+ A HG+ ++ F M
Sbjct: 466 RDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEISWNAMLSASAQHGRVEDCCDLFRAM 525
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
++ G V F+ LL AC H G V+ G F +MT ++G++P EHYGCMVDLL R G
Sbjct: 526 LQEGFDAERVAFLNLLSACAHAGLVEAGCEHFSAMTGDHGVVPATEHYGCMVDLLGRKGR 585
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNI 192
L +A+ ++ MP+ P+ W AL+G CR++ + + A+ ++ +L + +V L NI
Sbjct: 586 LADAHGIVQAMPVPPDAATWMALMGACRIYGDTERGRFAAERVLELRANHTAAYVALCNI 645
Query: 193 YAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKL 252
Y+ A RWED A VRK+M +LG++K PG SSI + VHEFV D +HPQ+E I+ E++
Sbjct: 646 YSAAGRWEDAAAVRKIMADLGLRKIPGVSSIEIRSKVHEFVVRDRSHPQSEAIYAELERV 705
Query: 253 LDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVC 312
+ ++ GY T VL D+EE++KE+ L HSEKLA+ FG+M+TP G+ +R++KNLRVC
Sbjct: 706 MGAIERAGYRAVTGEVLHDVEEEQKEQLLRFHSEKLAIAFGMMSTPQGSTLRVIKNLRVC 765
Query: 313 EDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
DCH A K IS++ REIVVRD RFH F+ G+CSCGDYW
Sbjct: 766 VDCHNASKFISKVFGREIVVRDVRRFHHFKDGACSCGDYW 805
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER-TVFTWSAMIQGLAIHG 60
+H + ++G V + L+ MY +CG L A +F +E V W+AMI + +G
Sbjct: 150 IHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANALFGHLERHLDVVLWNAMITANSQNG 209
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR-RFFYSMTTEYGIIPQIEH 119
+EAL F +M+++GI P+ VTF+ + AC + + + F++ E G+ +
Sbjct: 210 SPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHTCLDETGLGSDVVV 269
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V+ +R G + A EF MP + N V W +++
Sbjct: 270 ATALVNAYARCGEIDCAREFFAAMP-ERNAVSWTSMIAA 307
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 74/144 (51%), Gaps = 1/144 (0%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R+ + ++L+ MY++CG LE A VF ++ +++ W+ +I G + A+ F+++
Sbjct: 60 RDGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRI 119
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
++ GI + + F+ +L AC ++ G R + E G+ Q +V + R G
Sbjct: 120 LQEGIALDAIVFVSVLSACSSEEFLAAG-RLIHRCAVEAGLGLQEIVASALVSMYGRCGS 178
Query: 133 LQEAYEFIRNMPIKPNGVVWGALL 156
L++A ++ + V+W A++
Sbjct: 179 LRDANALFGHLERHLDVVLWNAMI 202
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 76/170 (44%), Gaps = 9/170 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMI--QGLAIH 59
V + + G ++ + L+ Y +C E A RVF EE W A + +A++
Sbjct: 351 VEAIAQEIGVATDVAIVTDLVMAYARCDGQEDAIRVFSAREEGE---WDAALVTAMIAVY 407
Query: 60 GQAKEALTSFN---KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ 116
Q ++ ++F IE GI P+ + +I L AC + + EGR+ + + +
Sbjct: 408 AQCRDRRSTFKLWGAAIERGISPDRILYITALDACASLAALSEGRQIHACVAADRRLDRD 467
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNID 166
+ +V + + G L++A + MP + + + W A+L H ++
Sbjct: 468 VTLGNAIVSMYGQCGSLRDARDAFDGMPAR-DEISWNAMLSASAQHGRVE 516
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H +++G ++ V L++ Y +CG ++ AR F M ER +W++MI A G
Sbjct: 255 HTCLDETGLGSDVVVATALVNAYARCGEIDCAREFFAAMPERNAVSWTSMIAAFAQIGHL 314
Query: 63 KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
A+ +F+ M+ G+ P T L C + R ++ E G+ +
Sbjct: 315 L-AVETFHAMLLEGVVPTRSTLFAALEGCEDL----HTARLVEAIAQEIGVATDV 364
>gi|125528180|gb|EAY76294.1| hypothetical protein OsI_04228 [Oryza sativa Indica Group]
Length = 646
Score = 331 bits (848), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 159/344 (46%), Positives = 225/344 (65%), Gaps = 1/344 (0%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GFR N+ +CN LI+ + +CG L A+ +F EM ER+V +W+A+I G +HGQ A+ F
Sbjct: 303 GFRDNLPLCNALINFHARCGSLAQAQELFDEMPERSVVSWTALIIGYGMHGQGDIAVDLF 362
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
M+ P+ V +GLL AC H G DEGR++F +M +Y + P++EHY CMVDLL R
Sbjct: 363 ETMVSEATAPDSVAMVGLLSACSHAGMYDEGRKYFSTMERDYCLRPKLEHYTCMVDLLGR 422
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
AG L EA E I +MP+ +G VWGALLG C++HKN+++ EEA ++ L+P N GY+V++
Sbjct: 423 AGRLDEARELIASMPMAADGAVWGALLGACKIHKNVEMGEEAFERVVSLEPANVGYYVLM 482
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
+NIYA+A + + VA+VR MR G++K PG S + G VH F+A D +HPQA +I+++
Sbjct: 483 ANIYADAGQLDGVAKVRAAMRRRGLRKEPGCSYVEHKGKVHLFMADDHSHPQARRIYELV 542
Query: 250 EKLLDGMKLK-GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKN 308
+L +K K G + E + HSEKLA+ FGL+NT G+ I ++KN
Sbjct: 543 VELERMVKEKTGGDVVEERAEKAVAEAAAVPLVGFHSEKLAVAFGLLNTEAGSEIVVIKN 602
Query: 309 LRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
LRVC DCH+ K ISE+ NR +VRD +RFH F+ G+CSC DYW
Sbjct: 603 LRVCGDCHSFLKTISELTNRAFLVRDASRFHRFENGACSCRDYW 646
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 9/176 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGC--LEGARRVFIEME--ERTVFTWSAMIQGL 56
++H + +SG N V N L+ +Y + G AR+VF EM R + +W+A+I
Sbjct: 184 QLHALAARSGLAANTSVANCLVSVYARGGGGGASLARQVFEEMPRASRDLVSWNAVISAH 243
Query: 57 AIHGQAKEALTSFNKMIEI---GIKPNGVTFIGLLHACGHMGWVDEGRRF-FYSMTTEYG 112
A +G A EA+ + +M G++P+ VT +G+L +C H G G Y T G
Sbjct: 244 AQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSCAHTGARRVGLDVEQYVRDTIPG 303
Query: 113 IIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
+ +++ +R G L +A E MP + + V W AL+ G +H D+A
Sbjct: 304 FRDNLPLCNALINFHARCGSLAQAQELFDEMPER-SVVSWTALIIGYGMHGQGDIA 358
>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 330 bits (847), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 171/358 (47%), Positives = 231/358 (64%), Gaps = 14/358 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE-RTVFTWSAMIQGLAIHG 60
+H + +SG+ + V N LIDMY +CG + AR VF M+E R++ +W++MI GLA+HG
Sbjct: 458 LHGFVEKSGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHG 517
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EA+ FN+M E G+ P+ ++FI LL+AC H G + EG +F M Y I P +EHY
Sbjct: 518 HGEEAIRIFNEMTESGVMPDEISFISLLYACSHAGLIKEGEGYFSKMKRVYHIEPAVEHY 577
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDL R+G LQ+AY FI MPI P +VW LLG C H NI+LAE+ ++L++LDP
Sbjct: 578 GCMVDLYGRSGKLQKAYSFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDP 637
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGD---- 236
N+G V+LSN+YA A +W+DVA +RK M +KK WS + V +++F A +
Sbjct: 638 NNSGDLVLLSNVYATAGKWKDVASIRKSMIVQRIKKITAWSLVEVGKTMYKFTACEKKKE 697
Query: 237 ---ETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFG 293
E H EK+ ++ +L D GY P + L D+EE+EKE + +HSEKLAL F
Sbjct: 698 IDIEAH---EKLKEIILRLRDE---AGYAPEVASALYDVEEEEKEDQVSKHSEKLALAFA 751
Query: 294 LMNTPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDY 351
L P G IRI+KNLR+C DCHA KL S + EIV+RDRNRFH F+ GSCSCGDY
Sbjct: 752 LARLPKGANIRIVKNLRICRDCHAVMKLTSRVYGVEIVIRDRNRFHSFKDGSCSCGDY 809
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 6/167 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN N ++ Y+K G LE A+R+F EM R +WS MI G + +G E+ + F ++
Sbjct: 368 RNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFREL 427
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLLSRAG 131
+ ++PN V+ G+L AC G + G+ + + Y I + + ++D+ SR G
Sbjct: 428 LRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNN--ALIDMYSRCG 485
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ A M K + V W +++ G +H + EEA R +++
Sbjct: 486 NVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGH---GEEAIRIFNEM 529
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 12/162 (7%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G ++ V TLI MY +CGC+ AR+VF EM + + W+A++
Sbjct: 294 QMHCQALKHGLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGN 353
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A F+KM+ V G + A G ++ +R F M + +
Sbjct: 354 DVSGAREIFDKMLVRNHTSWNVMLAGYIKA----GELECAKRIFSEMPHRDDV-----SW 404
Query: 121 GCMVDLLSRAGFLQEAYEFIRNM---PIKPNGVVWGALLGGC 159
M+ S G E++ + R + ++PN V +L C
Sbjct: 405 STMIVGFSHNGSFNESFSYFRELLRAEMRPNEVSLTGVLSAC 446
>gi|242055215|ref|XP_002456753.1| hypothetical protein SORBIDRAFT_03g041980 [Sorghum bicolor]
gi|241928728|gb|EES01873.1| hypothetical protein SORBIDRAFT_03g041980 [Sorghum bicolor]
Length = 521
Score = 330 bits (847), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 158/351 (45%), Positives = 219/351 (62%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + G V N+L+ MY K G L AR VF M R TW+A+I G A +G+
Sbjct: 171 VHAAAVHLGLCPFRSVGNSLVSMYAKTGALHDARAVFDAMPARCTITWTALIVGYAQNGR 230
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ +L + M+ G +P+ VTFIGLL AC H G VD GR F SM +YGI P +HY
Sbjct: 231 GRRSLEVYTDMVRSGCRPDYVTFIGLLFACSHAGLVDAGRDHFRSMAVDYGIAPGPDHYA 290
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L EA + + + + VW +LLG CRVH+N +LAE A+ + +LDP
Sbjct: 291 CMVDLLGRAGRLDEAMDLLNRSSTELDATVWKSLLGACRVHRNAELAERAAEMVWRLDPT 350
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ +V+LSN+Y+ A RW DVAR+R LM+ G+ K PG S + V+GV H F D HP+
Sbjct: 351 DAVPYVMLSNLYSRARRWGDVARIRALMKARGITKEPGCSWVGVNGVTHLFHVEDRGHPR 410
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A +I++ E++ + ++ +GY+P+T L D + +E+ L HSE+LA+ FGL+ P
Sbjct: 411 AAEIYRKVEEMTERIRAEGYVPDTDWALQDEAPEGRERGLAYHSERLAVAFGLLAVPAAA 470
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLRVC DCH A K++++ R I++RD N FH + G CSCGDYW
Sbjct: 471 PIRVFKNLRVCGDCHTAIKMVAKAYGRVIILRDANCFHHMKDGECSCGDYW 521
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 5/148 (3%)
Query: 14 NIRVCNTLIDMYVKCGCLEGA---RRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
++ V N L+D Y + C GA R VF EM R V TW++++ GLA G A+ +++
Sbjct: 79 HLHVANALVDAYARLPCAGGAATARAVFDEMPRRDVVTWTSLLTGLARAGAHAAAVRAYH 138
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
M+ G++ + +L +C +D GR ++ G+ P +V + ++
Sbjct: 139 GMVAAGVQTDEFAVAAVLSSCAGSTALDVGRS-VHAAAVHLGLCPFRSVGNSLVSMYAKT 197
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGG 158
G L +A MP + + W AL+ G
Sbjct: 198 GALHDARAVFDAMPARCT-ITWTALIVG 224
>gi|224127907|ref|XP_002320193.1| predicted protein [Populus trichocarpa]
gi|222860966|gb|EEE98508.1| predicted protein [Populus trichocarpa]
Length = 498
Score = 330 bits (846), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 161/351 (45%), Positives = 227/351 (64%), Gaps = 2/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H S + F ++ V LID Y K G LE A +VF E+T+ +W+ MI G AI+G
Sbjct: 150 IHCLSIRKSFIEDLYVATALIDTYSKSGDLESAHKVFWS-AEKTLASWNCMIMGFAINGC 208
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+E + + M GI P+ +TF LL C + G V+EG + F M+ +YGI P IEHY
Sbjct: 209 GREVIALLDGMQRAGILPDAITFTALLSGCKNSGLVEEGWKCFDMMSNDYGIKPTIEHYS 268
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CM DLL RAG+L EA++FI+ MPIKP+ VWGA+LG CR+H NI+ AE A+++L +L+P
Sbjct: 269 CMADLLGRAGYLDEAWDFIQTMPIKPDASVWGAMLGSCRIHGNIEFAEIAAKELFKLEPY 328
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+ +V++ ++YA + RWEDV R++ LM G+K WS I +D VH F AG H
Sbjct: 329 NSANYVLMLSLYAMSNRWEDVDRIKDLMDTRGIKPRQVWSWIQIDQRVHLFSAGGIPHQD 388
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I+ +L+ +K GY+P+ + V +I+E+EK K L H+EKLA+T+GL+ T
Sbjct: 389 EGEIYYELYQLVSELKKFGYLPDVNCVYQNIDEEEKVKMLLSHTEKLAITYGLIKTSSA- 447
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR++KN R+C DCH A KLIS + +REI +RD RFH F+AG CSC DYW
Sbjct: 448 PIRVIKNTRICSDCHTAAKLISLVRSREIFLRDGVRFHHFKAGKCSCNDYW 498
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 24 MYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVT 83
MYVK CL ++ +F M+ + + W+++I G + G A N+M E GIKP+ +T
Sbjct: 1 MYVKNDCLTSSQAIFDNMKNKNIVAWNSLISGYSFKGHFDHAKRLLNRMKEEGIKPDLIT 60
Query: 84 FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM 143
+ L+ G E + + G+ P + + ++ S+ G E+ E M
Sbjct: 61 WNSLVAGYSMRGHTKEALALIHDIKIS-GLTPNVVSWTALISGCSQNGNYSESIEAFVQM 119
Query: 144 P---IKPNGVVWGALLGGC 159
IKPN +LL C
Sbjct: 120 QEEGIKPNSATISSLLRTC 138
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 41/208 (19%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME----ERTVFTWSAMIQGLAIHGQAK 63
+ G + ++ N+L+ Y G + A + +++ V +W+A+I G + +G
Sbjct: 51 EEGIKPDLITWNSLVAGYSMRGHTKEALALIHDIKISGLTPNVVSWTALISGCSQNGNYS 110
Query: 64 EALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCM 123
E++ +F +M E GIKPN T LL CG + + +G+ + ++ I + +
Sbjct: 111 ESIEAFVQMQEEGIKPNSATISSLLRTCGGLSLLQKGKE-IHCLSIRKSFIEDLYVATAL 169
Query: 124 VDLLSRAGFLQEAYEF---------------------------------IRNMPIKPNGV 150
+D S++G L+ A++ ++ I P+ +
Sbjct: 170 IDTYSKSGDLESAHKVFWSAEKTLASWNCMIMGFAINGCGREVIALLDGMQRAGILPDAI 229
Query: 151 VWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ ALL GC KN L EE + D +
Sbjct: 230 TFTALLSGC---KNSGLVEEGWKCFDMM 254
>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
Length = 745
Score = 330 bits (846), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 157/344 (45%), Positives = 226/344 (65%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
SG I V N L+ +Y KCG +E A R+F EM +W+A++ G A G+AKE +
Sbjct: 402 SGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDL 461
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
F KM+ G+KP+GVTFIG+L AC G+V++GR +F+SM ++GI+P +HY CM+DL S
Sbjct: 462 FEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYS 521
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVV 188
R+G L+EA EFI+ MP+ P+ + WG LL CR+ ++++ + A+ L ++DP N +V+
Sbjct: 522 RSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPASYVL 581
Query: 189 LSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQM 248
L +++A +W +VA++R+ MR+ VKK PG S I VH F A D++HP ++ I++
Sbjct: 582 LCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPCSKGIYEK 641
Query: 249 WEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKN 308
E L M +GY P+ S VL D+ + +K + HSEKLA+ FGL+ P PIRI+KN
Sbjct: 642 LEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLAIAFGLIFVPQEMPIRIVKN 701
Query: 309 LRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
LRVC DCH A K IS+I R+I+VRD RFH F G CSCGD+W
Sbjct: 702 LRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGVCSCGDFW 745
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 92/174 (52%), Gaps = 6/174 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y ++ + N+ V + L+DMY KC ++ A VF M + + +W+A+I G +G
Sbjct: 293 QIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNG 352
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++EA+ F++M GI P+ T ++ +C ++ ++EG + F+ + G++ I
Sbjct: 353 CSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQ-FHCLALVSGLMHYITVS 411
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC----RVHKNIDLAEE 170
+V L + G +++A+ M + V W AL+ G R + IDL E+
Sbjct: 412 NALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWTALVSGYAQFGRAKETIDLFEK 464
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 12/185 (6%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+N+ + NT+I ++C +E ARR+F M +R TW+ M+ G +G EAL F +M
Sbjct: 204 KNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRM 263
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLLSRAG 131
GI + TF +L ACG + +++G++ Y + T Y + +VD+ S+
Sbjct: 264 RFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYD--DNVFVGSALVDMYSKCR 321
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR-----QLDQLDPLNNGYH 186
++ A R M K N + W AL+ G + +EEA R Q D +DP +
Sbjct: 322 SIKLAETVFRRMTCK-NIISWTALIVG---YGQNGCSEEAVRVFSEMQRDGIDPDDYTLG 377
Query: 187 VVLSN 191
V+S+
Sbjct: 378 SVISS 382
>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
Length = 810
Score = 330 bits (846), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 152/352 (43%), Positives = 224/352 (63%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y +SG++ ++ + L+DMY KCGCL+ A R F EM ER +W+A+I A +G
Sbjct: 459 QLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYG 518
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+AK A+ F M+ G P+ VTF+ +L AC H G DE ++F+ M +Y I P EHY
Sbjct: 519 EAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHY 578
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C++D L R G + + + MP K + ++W ++L CR+H N +LA A+ +L ++P
Sbjct: 579 ACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEP 638
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +V+LSNIYA A +WED A V+K+MR+ GV+K G+S + + ++ F + D T P
Sbjct: 639 TDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSP 698
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++I ++L M +GY P+ + L ++ + K + L HSE+LA+ F LMNTP G
Sbjct: 699 MIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAG 758
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPIRIMKNL C DCHA K+IS+IVNR+I+VRD RFH F+ G CSCGDYW
Sbjct: 759 TPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 2/140 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N LIDMY KCG L+ A+ F E++ +W+A+I G +GQ +EAL F+ M G++
Sbjct: 376 NALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLR 435
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ TF ++ A + + GR+ +S G + +VD+ ++ G L EA
Sbjct: 436 PDRATFSSIIKASSSLAMIGLGRQ-LHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALR 494
Query: 139 FIRNMPIKPNGVVWGALLGG 158
MP + N + W A++
Sbjct: 495 TFDEMPER-NSISWNAVISA 513
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 1/147 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ + G ++ VCNTL+D Y K G L ARRVF+EM ++ T++AM+ G + G
Sbjct: 157 LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGL 216
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+AL F M GI TF +L M + G + +++ + +
Sbjct: 217 HTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQ-VHALVLRSTSVLNVFVNN 275
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPN 148
++D S+ L + MP + N
Sbjct: 276 SLLDFYSKCDCLDDMRRLFDEMPERDN 302
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH +S N+ V N+L+D Y KC CL+ RR+F EM ER +++ +I A +
Sbjct: 257 QVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQ 316
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A L F +M ++G + + +L G + V G++ ++ G+ +
Sbjct: 317 CAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQ-IHAQLVLLGLASEDLLG 375
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ S+ G L A N K + + W AL+ G
Sbjct: 376 NALIDMYSKCGMLDAAKSNFSNRSEK-SAISWTALITG 412
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 7/147 (4%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+NI N ++ Y G L A+ +F+ R TW+ M++ A G+ +AL+ F M
Sbjct: 72 KNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAM 131
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ G+ P+ VT +L+ G + ++G+ + ++D + G
Sbjct: 132 LGEGVIPDRVTVTTVLNLPGCT------VPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGL 185
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGC 159
L A M K + V + A++ GC
Sbjct: 186 LAAARRVFLEMHDK-DAVTYNAMMMGC 211
>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g56690, mitochondrial; Flags: Precursor
gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 704
Score = 330 bits (846), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 165/353 (46%), Positives = 223/353 (63%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + F ++ V + L+ MYVKCG L A+ VF + + W+++I G A HG
Sbjct: 352 QVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHG 411
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F++M G PN VT I +L AC + G ++EG F SM +++ + P +EHY
Sbjct: 412 LGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHY 471
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C VD+L RAG + +A E I +M IKP+ VWGALLG C+ H +DLAE A+++L + +P
Sbjct: 472 SCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEP 531
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGD-ETH 239
N G +V+LS+I A +W DVA VRK MR V K PG S I V VH F G + H
Sbjct: 532 DNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNH 591
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ I M EK ++ GY P+ S VL D++E+EK L RHSE+LA+ +GL+ P
Sbjct: 592 PEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPE 651
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIR+MKNLRVC DCHAA KLIS++ REI++RD NRFH F G CSC DYW
Sbjct: 652 GVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 14/168 (8%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ N L+ Y+K + AR VF M ER V +W+AM++G G EA + F +M
Sbjct: 77 RNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRM 136
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E V F GL+ G +D+ R+ + M + + M+ L R G
Sbjct: 137 PERNEVSWTVMFGGLIDD----GRIDKARKLYDMMP-----VKDVVASTNMIGGLCREGR 187
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+ EA M + N V W ++ G R + +D+A R+L ++ P
Sbjct: 188 VDEARLIFDEMR-ERNVVTWTTMITGYRQNNRVDVA----RKLFEVMP 230
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%)
Query: 18 CNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGI 77
CN +I + + G + ARRVF ME+R TW MI+ G EAL F +M + G+
Sbjct: 268 CNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGV 327
Query: 78 KPNGVTFIGLLHACGHMGWVDEGRR 102
+P+ + I +L C + + GR+
Sbjct: 328 RPSFPSLISILSVCATLASLQYGRQ 352
Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 55/264 (20%), Positives = 105/264 (39%), Gaps = 30/264 (11%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ T+I Y + ++ AR++F M E+T +W++M+ G + G+ ++A F M
Sbjct: 201 RNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVM 260
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ +G G +G + + RR F M + M+ R GF
Sbjct: 261 PMKPVIACNAMIVGF----GEVGEISKARRVFDLMEDRDNAT-----WRGMIKAYERKGF 311
Query: 133 LQEAYEFIRNMP---IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGY-HVV 188
EA + M ++P+ ++L C ++ + L + ++ Y V
Sbjct: 312 ELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASV 371
Query: 189 LSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQM 248
L +Y + ++ + + + K W+SI ++G +H E+
Sbjct: 372 LMTMYVKC---GELVKAKLVFDRFSSKDIIMWNSI---------ISGYASHGLGEEAL-- 417
Query: 249 WEKLLDGMKLKGYIPNTSVVLLDI 272
K+ M G +PN V L+ I
Sbjct: 418 --KIFHEMPSSGTMPN-KVTLIAI 438
Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 99/251 (39%), Gaps = 20/251 (7%)
Query: 18 CNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGI 77
C+ I + G + AR+ F ++ + + +W++++ G +G KEA F++M E
Sbjct: 20 CSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSE--- 76
Query: 78 KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAY 137
N V++ GL+ + E R F M + + MV + G + EA
Sbjct: 77 -RNVVSWNGLVSGYIKNRMIVEARNVFELMPER-----NVVSWTAMVKGYMQEGMVGEAE 130
Query: 138 EFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAE 197
MP + N V W + GG ID A R+L + P+ + V +N+
Sbjct: 131 SLFWRMP-ERNEVSWTVMFGGLIDDGRIDKA----RKLYDMMPVKD--VVASTNMIGGLC 183
Query: 198 RWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEF---VAGDETHPQAEKIFQMWEKLLD 254
R V R + + + W+++ + G VA EK W +L
Sbjct: 184 REGRVDEARLIFDEMRERNVVTWTTM-ITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLL 242
Query: 255 GMKLKGYIPNT 265
G L G I +
Sbjct: 243 GYTLSGRIEDA 253
>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 615
Score = 330 bits (846), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 155/334 (46%), Positives = 219/334 (65%), Gaps = 1/334 (0%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N+LIDMY KCG L +RRVF M ER+V +W+AM+ G HG E ++ F K + +K
Sbjct: 283 NSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLF-KDLHKEVK 341
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ VT + +L C H G VDEG F ++ E + HYGC++DLL R+G L++A
Sbjct: 342 PDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALN 401
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAER 198
I NMP + +WG+LLG CRVH N+ + E +++L +++P N G +V+LSNIYA A
Sbjct: 402 LIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGM 461
Query: 199 WEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKL 258
W+DV +VRKLM V K PG S I +D V+H F + + HP + I +++ +K
Sbjct: 462 WKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKA 521
Query: 259 KGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAA 318
G++P+ S VL D+++++KE+ L HSEKLA+TFGLMNTPPG IR+MKNLR+C DCH
Sbjct: 522 AGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNF 581
Query: 319 FKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
K +S++ REI +RD+NRFH G+C+CGDYW
Sbjct: 582 AKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 615
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 1/144 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + +R + + L+ MYV+CG L+ AR V M ER+V +W+ MI G +
Sbjct: 63 QVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTE 122
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EAL F KM+ G PN T +L +C + +G++ +S+ + +
Sbjct: 123 RHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQ-VHSLLVKTNFESHMFVG 181
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMP 144
++D+ +++ +QEA +P
Sbjct: 182 SSLLDMYAKSENIQEARRVFDTLP 205
>gi|326502116|dbj|BAK06550.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 542
Score = 330 bits (846), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 159/355 (44%), Positives = 236/355 (66%), Gaps = 4/355 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+ E R++ + N+L+D+Y KCG +E AR+VF M ER V +W+ I LA HG
Sbjct: 188 LRELGGHGDVSRDVLINNSLVDLYGKCGAVELARQVFDRMPERDVTSWNVAILTLANHGC 247
Query: 62 AKEALTSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+E++ F++M + + PN +TF+ +L AC H G V+EGRR+F M EY I P+IEHY
Sbjct: 248 VRESVELFDRMTRVENVVPNAITFVAVLSACNHGGMVEEGRRYFDMMVGEYRIRPRIEHY 307
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG-CRVHKNIDLAEEASR-QLDQL 178
GCMVD+L+RAGF++EA + + M +P+ ++W +LL CR + ++L+E ++ LD
Sbjct: 308 GCMVDILARAGFIEEALDVVSGMNCRPDAIIWRSLLDACCRQNAGLELSEAMAKLALDVP 367
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
D +G +V+LS +YA A++W DV VR+LM + G+KK PG+SSI +DG+VH+FVAGD +
Sbjct: 368 DDAVSGVYVLLSRVYAFAQKWNDVGMVRRLMSDEGLKKEPGFSSIEMDGLVHQFVAGDTS 427
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTS-VVLLDIEEKEKEKFLYRHSEKLALTFGLMNT 297
HPQ+E+I+ +++ + GY P+ S ++ + K L HSE+LA++FGL+
Sbjct: 428 HPQSEEIYAKLDEIEQRLASSGYKPDLSEARMVAGMDHTKGAALRLHSERLAISFGLLKG 487
Query: 298 PPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIRI+KNLRVC+DCH KLI+ + EI+VRDR RFH F+ G+CSC DYW
Sbjct: 488 TAGAPIRILKNLRVCKDCHTISKLITGLYGVEIIVRDRIRFHHFKDGACSCKDYW 542
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 5/133 (3%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI-EI 75
V N+L+ +Y CG + A +F + +++ +W+ + LA + AL F +M +
Sbjct: 96 VANSLLHLYASCGLPDAALALFRCIPAKSLVSWNTAVDALASNADHLGALDLFREMQRDT 155
Query: 76 GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYG----IIPQIEHYGCMVDLLSRAG 131
G+ P+ T +L AC G + G + E G + + +VDL + G
Sbjct: 156 GLAPDAYTLQSVLGACAGAGALSLGVYAHALLLRELGGHGDVSRDVLINNSLVDLYGKCG 215
Query: 132 FLQEAYEFIRNMP 144
++ A + MP
Sbjct: 216 AVELARQVFDRMP 228
>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
Length = 604
Score = 330 bits (845), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 159/351 (45%), Positives = 228/351 (64%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + ++ G ++ + LIDMY KCG +E A+ VF M ER WSAMI GLAIHG
Sbjct: 255 VHAFIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGL 314
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ AL F++M+E+ ++PN VTFIG+L AC H G V+EGRR++ +M E GI P +E+YG
Sbjct: 315 VEVALKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTMQ-ELGIKPSMENYG 373
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL R+ L EAY F+ M I PN V+W LL + D+ + AS++L +L+P
Sbjct: 374 CMVDLFCRSSLLDEAYSFVTGMAIPPNSVIWRTLLVASKNSNRFDIVQSASKKLLELEPC 433
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N +V+LSN+YA +W+ V+ +RK M+ V G SSI ++G +H+FV D++HP+
Sbjct: 434 NPENYVLLSNLYASNSQWDRVSYMRKKMKENNVNVVAGCSSIEINGYLHKFVVSDDSHPE 493
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I + ++ D + G+ P T+ VL D+ E+EKE L HSE+LA+ +GL+ T
Sbjct: 494 IKEIRLLLREIADRVVRAGHKPWTAAVLHDVGEEEKEVALCEHSERLAIAYGLLKTKAPH 553
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR++KNLR C DCH K++S+ +REI+VRDR RFH F GSCSC D+W
Sbjct: 554 VIRVVKNLRFCPDCHEVAKIVSKSYDREIIVRDRVRFHRFVEGSCSCKDFW 604
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 132/295 (44%), Gaps = 21/295 (7%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM-EERTVFTWSAMIQGLAIH 59
++H + + G + V L+++Y KC + AR VF M ++ + WSAMI G +
Sbjct: 152 QLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDKNLAAWSAMIGGYSRV 211
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G EAL F +M + P+ VT + ++ AC G +D G R+ ++ GI +E
Sbjct: 212 GMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLG-RWVHAFIDRKGITVDLEL 270
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA-SRQLD-Q 177
++D+ ++ G ++ A M + + W A++ G +H +++A + SR L+ +
Sbjct: 271 STALIDMYAKCGLIERAKGVFDAMAER-DTKAWSAMIVGLAIHGLVEVALKLFSRMLELK 329
Query: 178 LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD--------GVV 229
+ P N + VLS A + + R M+ LG+K + VD
Sbjct: 330 VRPNNVTFIGVLSAC-AHSGLVNEGRRYWSTMQELGIKPSMENYGCMVDLFCRSSLLDEA 388
Query: 230 HEFVAGDETHPQAEKIFQMWEKLLDGMKLKG---YIPNTSVVLLDIEEKEKEKFL 281
+ FV G P + +W LL K + + S LL++E E ++
Sbjct: 389 YSFVTGMAIPPNS----VIWRTLLVASKNSNRFDIVQSASKKLLELEPCNPENYV 439
>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g68930
gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 743
Score = 330 bits (845), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 158/352 (44%), Positives = 225/352 (63%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H + SG + V N+L+ +Y KCG ++ + R+F EM R +W+AM+ A G
Sbjct: 392 QFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFG 451
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A E + F+KM++ G+KP+GVT G++ AC G V++G+R+F MT+EYGI+P I HY
Sbjct: 452 RAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHY 511
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DL SR+G L+EA FI MP P+ + W LL CR N+++ + A+ L +LDP
Sbjct: 512 SCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDP 571
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ + +LS+IYA +W+ VA++R+ MR VKK PG S I G +H F A DE+ P
Sbjct: 572 HHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSP 631
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++I+ E+L + + GY P+TS V D+EE K K L HSE+LA+ FGL+ P G
Sbjct: 632 YLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSG 691
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLRVC DCH A K IS + REI+VRD RFH F+ G+CSCGD+W
Sbjct: 692 QPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 83/156 (53%), Gaps = 2/156 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ F+ +I V + LIDMY KC CL A+ VF M+++ V +W+AM+ G G
Sbjct: 291 QIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTG 350
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+EA+ F M GI P+ T + AC ++ ++EG +F T G+I +
Sbjct: 351 RAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITS-GLIHYVTVS 409
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
+V L + G + ++ M ++ + V W A++
Sbjct: 410 NSLVTLYGKCGDIDDSTRLFNEMNVR-DAVSWTAMV 444
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 88/173 (50%), Gaps = 11/173 (6%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN + N+L+ + CG +E A ++F ME+ +V +W+AMI+GLA +G AKEA+ F +M
Sbjct: 203 RNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSV-SWAAMIKGLAQNGLAKEAIECFREM 261
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
G+K + F +L ACG +G ++EG++ ++ I ++D+ +
Sbjct: 262 KVQGLKMDQYPFGSVLPACGGLGAINEGKQ-IHACIIRTNFQDHIYVGSALIDMYCKCKC 320
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR-----QLDQLDP 180
L A M K N V W A++ G + AEEA + Q +DP
Sbjct: 321 LHYAKTVFDRMKQK-NVVSWTAMVVG---YGQTGRAEEAVKIFLDMQRSGIDP 369
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 33/181 (18%), Positives = 71/181 (39%), Gaps = 43/181 (23%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM- 72
N+ N L+ Y K G + F ++ +R TW+ +I+G ++ G A+ ++N M
Sbjct: 71 NLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 130
Query: 73 -----------------------------------IEIGIKPNGVTFIGLLHACGHMGWV 97
I++G + + LL+ ++G +
Sbjct: 131 RDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCI 190
Query: 98 DEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
+ ++ FY + ++ Y ++ L G +++A + R M + + V W A++
Sbjct: 191 SDAKKVFYGLDDRNTVM-----YNSLMGGLLACGMIEDALQLFRGM--EKDSVSWAAMIK 243
Query: 158 G 158
G
Sbjct: 244 G 244
>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 755
Score = 330 bits (845), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 156/352 (44%), Positives = 225/352 (63%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y + G R + V ++LIDMY K G L+ A +F +++E V W++MI G A+HG
Sbjct: 404 QIHAYIQKIGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIKEPNVVLWTSMISGCALHG 463
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q KEA++ F M+ +GI PN VTF+G+L+AC H+G ++EG R+F M Y I P++EHY
Sbjct: 464 QGKEAISLFEGMLNLGIIPNEVTFVGVLNACSHVGLIEEGCRYFRMMKDTYHINPEVEHY 523
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
MV+L RAG L EA FI I VW + L CR+HKN ++ + S L Q P
Sbjct: 524 TSMVNLYGRAGHLIEAKNFIFENSISHFTSVWRSFLSSCRLHKNFNMGKSVSEMLLQSAP 583
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +++LSN+ + +W++ A VR LM GVKK PG S + + +H F GD +HP
Sbjct: 584 SDPDAYILLSNMCSSNHQWDEAAIVRSLMYQRGVKKQPGQSWVQLKDQIHSFTVGDRSHP 643
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q ++I+ + L+ +K GY + +V+ D+EE++ E + HSEKLAL F ++NT P
Sbjct: 644 QDKEIYSYLDSLIGRLKEIGYSLDAKLVMQDVEEEQGEVLISHHSEKLALVFSIINTSPR 703
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPIRIMKNLR+C DCH FK S+++ REI+VRD +RFH F+ SCSCG+YW
Sbjct: 704 TPIRIMKNLRICNDCHNFFKYASQLLEREIIVRDTHRFHHFKQSSCSCGEYW 755
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 76/179 (42%), Gaps = 3/179 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLA-IHG 60
+H + + G + + N L+ +YVK L+ A ++F E+ + TW+ +I G A G
Sbjct: 54 LHGHYFKKGSLQILNSANYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFARAAG 113
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++ + F +M G PN T +L C + G+ ++ G+ +
Sbjct: 114 SSELVFSLFREMQADGACPNQYTLSSVLKCCSRENNIQFGKG-IHAWILRNGVGGDVVLE 172
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
++DL + + A F M I+ + V W ++G +++ + E R D
Sbjct: 173 NSILDLYLKCKEFEYAESFFELM-IEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKD 230
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 1/127 (0%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N +I Y++ G +E + +F + V +W+ +I GL G + AL M+ G +
Sbjct: 204 NIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYERLALEQLYCMVAHGTE 263
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
+ VTF L + V+ GR+ + T +G+ +V++ + G + +A
Sbjct: 264 FSPVTFSIALILVSSLSLVEVGRQLHGRVLT-FGLNSDGYIRSSLVEMYGKCGRMDKAST 322
Query: 139 FIRNMPI 145
++++P+
Sbjct: 323 ILKDVPL 329
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + ++G ++ + N+++D+Y+KC E A F M E+ V +W+ MI G
Sbjct: 156 IHAWILRNGVGGDVVLENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLREGD 215
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGH 93
+++L F + GL+ CG+
Sbjct: 216 VEKSLEMFRNFPNKDVVSWNTIIDGLIQ-CGY 246
>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
Length = 1122
Score = 330 bits (845), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 152/352 (43%), Positives = 224/352 (63%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y +SG++ ++ + L+DMY KCGCL+ A R F EM ER +W+A+I A +G
Sbjct: 459 QLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYG 518
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+AK A+ F M+ G P+ VTF+ +L AC H G DE ++F+ M +Y I P EHY
Sbjct: 519 EAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHY 578
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C++D L R G + + + MP K + ++W ++L CR+H N +LA A+ +L ++P
Sbjct: 579 ACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEP 638
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +V+LSNIYA A +WED A V+K+MR+ GV+K G+S + + ++ F + D T P
Sbjct: 639 TDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSP 698
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++I ++L M +GY P+ + L ++ + K + L HSE+LA+ F LMNTP G
Sbjct: 699 MIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAG 758
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPIRIMKNL C DCHA K+IS+IVNR+I+VRD RFH F+ G CSCGDYW
Sbjct: 759 TPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 2/140 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N LIDMY KCG L+ A+ F E++ +W+A+I G +GQ +EAL F+ M G++
Sbjct: 376 NALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLR 435
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ TF ++ A + + GR+ +S G + +VD+ ++ G L EA
Sbjct: 436 PDRATFSSIIKASSSLAMIGLGRQ-LHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALR 494
Query: 139 FIRNMPIKPNGVVWGALLGG 158
MP + N + W A++
Sbjct: 495 TFDEMPER-NSISWNAVISA 513
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 1/147 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ + G ++ VCNTL+D Y K G L ARRVF+EM ++ T++AM+ G + G
Sbjct: 157 LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGL 216
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+AL F M GI TF +L M + G + +++ + +
Sbjct: 217 HTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQ-VHALVLRSTSVLNVFVNN 275
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPN 148
++D S+ L + MP + N
Sbjct: 276 SLLDFYSKCDCLDDMRRLFDEMPERDN 302
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH +S N+ V N+L+D Y KC CL+ RR+F EM ER +++ +I A +
Sbjct: 257 QVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQ 316
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A L F +M ++G + + +L G + V G++ ++ G+ +
Sbjct: 317 CAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQ-IHAQLVLLGLASEDLLG 375
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ S+ G L A N K + + W AL+ G
Sbjct: 376 NALIDMYSKCGMLDAAKSNFSNRSEK-SAISWTALITG 412
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 7/147 (4%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+NI N ++ Y G L A+ +F+ R TW+ M++ A G+ +AL+ F M
Sbjct: 72 KNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAM 131
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ G+ P+ VT +L+ G + ++G+ + ++D + G
Sbjct: 132 LGEGVIPDRVTVTTVLNLPGCT------VPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGL 185
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGC 159
L A M K + V + A++ GC
Sbjct: 186 LAAARRVFLEMHDK-DAVTYNAMMMGC 211
>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
Length = 583
Score = 330 bits (845), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 155/334 (46%), Positives = 219/334 (65%), Gaps = 1/334 (0%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N+LIDMY KCG L +RRVF M ER+V +W+AM+ G HG E ++ F K + +K
Sbjct: 251 NSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLF-KDLHKEVK 309
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ VT + +L C H G VDEG F ++ E + HYGC++DLL R+G L++A
Sbjct: 310 PDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALN 369
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAER 198
I NMP + +WG+LLG CRVH N+ + E +++L +++P N G +V+LSNIYA A
Sbjct: 370 LIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGM 429
Query: 199 WEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKL 258
W+DV +VRKLM V K PG S I +D V+H F + + HP + I +++ +K
Sbjct: 430 WKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKA 489
Query: 259 KGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAA 318
G++P+ S VL D+++++KE+ L HSEKLA+TFGLMNTPPG IR+MKNLR+C DCH
Sbjct: 490 AGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNF 549
Query: 319 FKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
K +S++ REI +RD+NRFH G+C+CGDYW
Sbjct: 550 AKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 583
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 5/178 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + +R + + L+ MYV+CG L+ AR V M ER+V +W+ MI G +
Sbjct: 31 QVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTE 90
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EAL F KM+ G PN T +L +C + +G++ +S+ + +
Sbjct: 91 RHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQ-VHSLLVKTNFESHMFVG 149
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++D+ +++ +QEA +P + + V A++ G K +D EEA QL
Sbjct: 150 SSLLDMYAKSENIQEARRVFDTLP-ERDVVSCTAIISG-YAQKGLD--EEALDLFRQL 203
>gi|115441047|ref|NP_001044803.1| Os01g0848300 [Oryza sativa Japonica Group]
gi|15408890|dbj|BAB64281.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113534334|dbj|BAF06717.1| Os01g0848300 [Oryza sativa Japonica Group]
gi|125572632|gb|EAZ14147.1| hypothetical protein OsJ_04076 [Oryza sativa Japonica Group]
Length = 660
Score = 330 bits (845), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 171/352 (48%), Positives = 231/352 (65%), Gaps = 2/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERT-VFTWSAMIQGLAIHG 60
+H Y + GF + V N L+ MY+KCGCLE R +F + R V +W+ +I G +HG
Sbjct: 310 LHAYILRRGFDSLVSVLNALMAMYMKCGCLEAGRHIFDLIGHRKDVVSWNTLISGYGMHG 369
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA+ F M ++G+ PN +TFI +L AC H G VDEG+R F SM +Y + P+ EHY
Sbjct: 370 FGHEAVQVFEDMTQMGVSPNIITFISVLGACSHAGLVDEGKRLFESMV-DYNVTPRAEHY 428
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG L EA E I+ M I+P+ VWG+LLG CR+H++++ AE A QL L+P
Sbjct: 429 ACMVDLLGRAGHLDEAVELIQGMHIRPSPQVWGSLLGACRIHRHVEYAEMACSQLFDLEP 488
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +V+L++IYA A+ +V ++ L+ ++K PG S I V +H FV+ D +P
Sbjct: 489 RNAGNYVLLADIYARAKLHSEVGVLKDLLEEHALEKVPGCSWIEVKKRLHMFVSVDNKNP 548
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q E++ + + + MK GY+P+T VL DIEE+EKEK L HSEKLA+ FGL+NT G
Sbjct: 549 QIEELQALIGEFVTQMKNDGYVPDTGAVLYDIEEEEKEKILLGHSEKLAVAFGLINTGRG 608
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI KNLR+CEDCH+ K IS+ REI+VRD NRFH F+ G CSCGDYW
Sbjct: 609 EVIRITKNLRLCEDCHSVTKFISKYAEREIIVRDVNRFHHFRDGICSCGDYW 660
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ + G+ + V TLID Y K G + A VF M ER V +W+AMI A + +
Sbjct: 207 IHAHAVRRGYGLHTHVATTLIDCYAKLGIVSYAESVFATMPERNVVSWTAMIGCYAKNER 266
Query: 62 AKEALTSFNKMI--EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+A+ F +M+ + + PN VT + +LHA + + +G + ++ G +
Sbjct: 267 PGDAILLFQEMVASDEDLVPNSVTIVCILHAFAGVNALGQG-KLLHAYILRRGFDSLVSV 325
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++ + + G L+ + + + V W L+ G +H
Sbjct: 326 LNALMAMYMKCGCLEAGRHIFDLIGHRKDVVSWNTLISGYGMH 368
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 9/153 (5%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
FR + + LID Y G L AR+VF E +++F W+A+++ LA+ +EAL
Sbjct: 110 FRSDPFLSTRLIDAYASLGELPAARQVFDEAPVKSIFVWNALLKALALADHGEEALARLA 169
Query: 71 KMIEIGIKPNGVTFIGLLHAC-----GHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMV 124
M + + + ++ L AC H+ R +++ YG+ + ++
Sbjct: 170 DMGRLRVPVDSYSYAHGLKACIAASTSHVPASALVREIHAHAVRRGYGLHTHVA--TTLI 227
Query: 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
D ++ G + A MP + N V W A++G
Sbjct: 228 DCYAKLGIVSYAESVFATMPER-NVVSWTAMIG 259
>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Brachypodium distachyon]
Length = 610
Score = 330 bits (845), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 154/352 (43%), Positives = 229/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + GF ++ V N ++DMY KC + AR VF E+ R + +W+ M+ G A HG
Sbjct: 259 QLHSLTMRLGFSSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHG 318
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+EA + +++M+ G+KPN VTF+GL++AC H G V +GR+ F SM EYGI P+++HY
Sbjct: 319 RAEEAFSLYDRMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHY 378
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C +DLLSR+G L EA E I MP P+ W +LL C+ + N +++ + L +L P
Sbjct: 379 TCYLDLLSRSGHLAEAEELITTMPYVPDEATWASLLSACKKYNNAEMSIRVADNLLELRP 438
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+V+LSN+YA +W+ V VRKLM ++ ++K PG+S I V F AG+
Sbjct: 439 KYPSTYVLLSNVYAVNGKWDSVDTVRKLMADMEIRKEPGYSWIEVGREFRLFHAGEVPID 498
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
E+I E+L+ M+ +GY+P+TS V+ D+EE EKE L HSE+LA+ FG++ +P G
Sbjct: 499 LREEILGFLEELVSEMRQRGYVPDTSSVMHDLEEHEKEHHLCLHSERLAVAFGILRSPLG 558
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ IR++KNLRVC DCH K ISEI R+I+VRD +RFH F+ G CSC ++W
Sbjct: 559 SVIRVVKNLRVCNDCHTVMKFISEIFQRKIIVRDASRFHHFEGGKCSCSEFW 610
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + S + + V ++LIDMY KCG + AR+VF + + W+A+I G ++G
Sbjct: 126 QLHGHFVASPYSSDDVVKSSLIDMYCKCGVPDDARKVFDSIVAKNSVMWTALISGYVLNG 185
Query: 61 QAKEALTSFNKM 72
++ EAL F M
Sbjct: 186 RSDEALELFRSM 197
>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g09950
gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 995
Score = 330 bits (845), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 164/355 (46%), Positives = 233/355 (65%), Gaps = 4/355 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH S ++ ++ V + L+DMY KCG L+ A R F M R ++W++MI G A HGQ
Sbjct: 641 VHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQ 700
Query: 62 AKEALTSFNKM-IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F M ++ P+ VTF+G+L AC H G ++EG + F SM+ YG+ P+IEH+
Sbjct: 701 GEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHF 760
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC-RVH-KNIDLAEEASRQLDQL 178
CM D+L RAG L + +FI MP+KPN ++W +LG C R + + +L ++A+ L QL
Sbjct: 761 SCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQL 820
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
+P N +V+L N+YA RWED+ + RK M++ VKK G+S +T+ VH FVAGD++
Sbjct: 821 EPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKS 880
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
HP A+ I++ ++L M+ GY+P T L D+E++ KE+ L HSEKLA+ F L
Sbjct: 881 HPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQR 940
Query: 299 PGT-PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T PIRIMKNLRVC DCH+AFK IS+I R+I++RD NRFH FQ G+CSC D+W
Sbjct: 941 SSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
+ + N L++MY KCG + ARRVF M ++ +W++MI GL +G EA+ + M
Sbjct: 349 VGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRR 408
Query: 75 IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ 134
I P T I L +C + W G++ + + + GI + ++ L + G+L
Sbjct: 409 HDILPGSFTLISSLSSCASLKWAKLGQQ-IHGESLKLGIDLNVSVSNALMTLYAETGYLN 467
Query: 135 EAYEFIRNMPIKPNGVVWGALLGG 158
E + +MP + + V W +++G
Sbjct: 468 ECRKIFSSMP-EHDQVSWNSIIGA 490
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+++ +CN LI+ Y++ G AR+VF EM R +W+ ++ G + +G+ KEAL M
Sbjct: 34 KDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDM 93
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWV 97
++ GI N F+ +L AC +G V
Sbjct: 94 VKEGIFSNQYAFVSVLRACQEIGSV 118
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 68/336 (20%), Positives = 133/336 (39%), Gaps = 60/336 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S + G N+ V N L+ +Y + G L R++F M E +W+++I LA
Sbjct: 436 QIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSE 495
Query: 61 QA-KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
++ EA+ F G K N +TF +L A + + + G++ + + + I +
Sbjct: 496 RSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQ-IHGLALKNNIADEATT 554
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH-----KNIDLA---EEA 171
++ + G + + M + + V W +++ G +H K +DL +
Sbjct: 555 ENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISG-YIHNELLAKALDLVWFMLQT 613
Query: 172 SRQLD------------QLDPLNNGYHV-----------------VLSNIYAEAERWEDV 202
++LD + L G V L ++Y++ R +
Sbjct: 614 GQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYA 673
Query: 203 ARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYI 262
R + V+ + W+S+ ++G H Q E+ KL + MKL G
Sbjct: 674 LR---FFNTMPVRNSYSWNSM---------ISGYARHGQGEEAL----KLFETMKLDGQT 717
Query: 263 PNTSVVLLDIEEKEKEKFL----YRHSEKLALTFGL 294
P V + + L ++H E ++ ++GL
Sbjct: 718 PPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGL 753
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 100/262 (38%), Gaps = 56/262 (21%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
+SG ++ V + L+ + K G L AR+VF +ME R T + ++ GL +EA
Sbjct: 236 KSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATK 295
Query: 68 SF---NKMI---------------------EIGIKPNG-----------VTFI-----GL 87
F N MI E+G+K V F+ GL
Sbjct: 296 LFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGL 355
Query: 88 LHACGHMGWVDEGRRFFYSMTTEYGI-----IPQIEHYGCMVDLLSRAGFLQEAYEFIRN 142
++ G + + RR FY MT + + I ++ GC ++ + R Y+ +R
Sbjct: 356 VNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVER-------YKSMRR 408
Query: 143 MPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD-PLNNGYHVVLSNIYAEAERWED 201
I P + L C K L ++ + +L LN L +YAE +
Sbjct: 409 HDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNE 468
Query: 202 VARVRKLMRNLGVKKTPGWSSI 223
RK+ ++ W+SI
Sbjct: 469 ---CRKIFSSMPEHDQVSWNSI 487
>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
Length = 608
Score = 330 bits (845), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 151/352 (42%), Positives = 230/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + GF ++ V N L+DMY KC + AR VF + R V +W+ ++ G A HG
Sbjct: 257 QLHGFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGITVRDVISWTTILVGEAQHG 316
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+E +N+M+ G+KPN VTF+GL++AC H G V +GR+ F SM EYG+ P ++HY
Sbjct: 317 RAEEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGVQHY 376
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C +DLLSR+G+L EA + I MP +P+ WGALL C+ H + + + L +L P
Sbjct: 377 TCYLDLLSRSGYLSEAEKLITTMPYEPDEATWGALLSACKKHNDTQMCLRVADNLLELRP 436
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +++LSN+YA +W+ VA+VRK+M + ++K PG+S + F AG+
Sbjct: 437 KDPSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKVPGYSWVEAGRESRIFHAGEVPLD 496
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
E+I E+L+ M+ +GY+P+TS V+ D+EE EKE+ L+ HSE+LA+ FG++ +PPG
Sbjct: 497 VGEEITCFLEELVSEMRKRGYVPDTSSVMHDLEEHEKEQHLFVHSERLAVAFGILKSPPG 556
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ IR++KNLRVC DCH K IS I R+I+VRD +RFH F+ G+CSC ++W
Sbjct: 557 SVIRVVKNLRVCGDCHTVMKFISAIAQRKIIVRDASRFHHFEDGNCSCSEFW 608
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 106/267 (39%), Gaps = 57/267 (21%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + S + + V ++LIDMY KCG + AR+VF + + W+A+I G A +G
Sbjct: 124 QLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNG 183
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHA---CGHMGWVDEGRRFFYSMTTEYGIIPQI 117
EAL F M G+ G + A G MG E RR + + + I
Sbjct: 184 CTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVI 243
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
G DL + ++ + F+ + + +V AL +D+ + S
Sbjct: 244 ---GGAADLAALV-LGRQLHGFVMRLGFLSSMIVGNAL---------VDMYSKCS----- 285
Query: 178 LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDE 237
D+ R++ + V+ W++I V G+
Sbjct: 286 -----------------------DIHSAREVFEGITVRDVISWTTILV---------GEA 313
Query: 238 THPQAEKIFQMWEKLLDGMKLKGYIPN 264
H +AE++F ++ ++L L G PN
Sbjct: 314 QHGRAEEVFALYNRML----LAGMKPN 336
>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
Length = 781
Score = 330 bits (845), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 162/353 (45%), Positives = 224/353 (63%), Gaps = 3/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + ++ ++ + + L+DMY KCG ++ A R F M R +++W++MI G A HG
Sbjct: 430 VHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGH 489
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AL F +M G P+ +TF+G+L AC H+G VDEG +F SMT YG++P++EHY
Sbjct: 490 GDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYS 549
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC--RVHKNIDLAEEASRQLDQLD 179
CMVDLL RAG L + FI MPIKPN ++W +LG C + +L A+ L +D
Sbjct: 550 CMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFNMD 609
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N +V+LSN+YA +WED+AR R+ MR VKK G S +T+ VH FVAGD +H
Sbjct: 610 PQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWVTMKDGVHVFVAGDNSH 669
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ I+ ++L ++ GY+P L D+E + KE+ L HSEKLA+ F ++
Sbjct: 670 PEKGLIYAKLKELDKKIRDAGYVPQIKFALYDLEPENKEELLSYHSEKLAVAF-VLTRNS 728
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIRIMKNLRVC DCH+AFK IS++V+R IV+RD NRFH F+ G CSC DYW
Sbjct: 729 GLPIRIMKNLRVCGDCHSAFKYISKVVDRSIVLRDSNRFHHFEDGKCSCRDYW 781
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 1 RVHEYSNQSGFR-RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
+VH Y+ ++G + V N LI+MY KCG ++ AR VF M ++ +W++MI GL +
Sbjct: 123 QVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQN 182
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
++A+ S+N M + G+ P+ I L +C +G + G++ + + G+ +
Sbjct: 183 KCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQ-THGEGIKLGLDMDVSV 241
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ L + L E + M ++ + V W ++G
Sbjct: 242 SNTLLALYAETSRLAECQKVFSWM-LERDQVSWNTVIGA 279
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
+ GF ++ +CNTLI++YV+ G AR++F EM +R TW+ +I G +G ++A
Sbjct: 28 KHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACG 87
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGH-MGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVD 125
+MI G PN F + AC M W +GR+ Y++ T G +++
Sbjct: 88 VLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNG-LIN 146
Query: 126 LLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHK 163
+ ++ G + A + + + + V W +++ G +K
Sbjct: 147 MYAKCGDIDHARS-VFGLMVDKDSVSWNSMITGLDQNK 183
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 2/150 (1%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA-KEALTS 68
G ++ V NTL+ +Y + L ++VF M ER +W+ +I LA G + EA+
Sbjct: 234 GLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEV 293
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
F +M+ G PN VTFI LL + + +++ +Y + ++
Sbjct: 294 FLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQ-IHALILKYNVKDDNAIENALLACYG 352
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++G ++ E M + + V W +++ G
Sbjct: 353 KSGEMENCEEIFSRMSERRDEVSWNSMISG 382
>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
Length = 720
Score = 330 bits (845), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 154/341 (45%), Positives = 217/341 (63%), Gaps = 3/341 (0%)
Query: 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
I V N L+ MY KCG L+ AR++F M + T +++I G A HG E+L F +M+
Sbjct: 380 ISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLA 439
Query: 75 IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ 134
I P +T + +L AC H G V+EG+++F M +GI P+ EHY CM+DLL RAG L
Sbjct: 440 ASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLS 499
Query: 135 EAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYA 194
EA I MP P W ALLG CR + N++LAE+A+ Q QL+P N +++L+++Y+
Sbjct: 500 EAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYS 559
Query: 195 EAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLD 254
A +WE+ AR+RKLMR+ G++K PG S I ++ VH FVA D +HP+ ++I +++
Sbjct: 560 AARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNSHPRIKEIHMYLDEMFV 619
Query: 255 GMKLKGYIPNTSVVLL---DIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRV 311
MK GY+P+ + + E+EKE L HSEKLA+ FGL+ T G P+ ++KNLR+
Sbjct: 620 KMKRAGYVPDVRWAFVKDDETGEQEKEIMLAHHSEKLAVAFGLLFTKHGEPLLVVKNLRI 679
Query: 312 CEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
C DCH A K +S I R+I VRD RFHCF+ G CSCGDYW
Sbjct: 680 CGDCHNAIKFMSAIARRKITVRDAYRFHCFEDGRCSCGDYW 720
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 89/167 (53%), Gaps = 9/167 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGC-LEGARRVFIEMEERTVFTWSAMIQGLAIH 59
+ H + ++GF +N V + LIDMY KCG + +R+VF E+ + W+ MI G + +
Sbjct: 262 QFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQN 321
Query: 60 GQ-AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIP-- 115
+ + EAL F +M G P+ +F+ + AC ++ +G++F +M +E IP
Sbjct: 322 KELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSE---IPSN 378
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
QI +V + S+ G LQ+A + + MP + N V +++ G H
Sbjct: 379 QISVNNALVTMYSKCGNLQDARKLFQRMP-QHNTVTLNSIIAGYAQH 424
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 7/164 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H NQ+ N+ N LI Y K + A +F ++ + + +++ +I A G
Sbjct: 62 AHHAFNQT-HEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGD 120
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHA-CGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
AL+ F +M E+G+ +G TF G++ A C H+G + R +S+ G +
Sbjct: 121 TLSALSLFGEMREMGLVMDGFTFSGVITACCNHVGLI----RQLHSLAFSSGFDSYVSVK 176
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIK-PNGVVWGALLGGCRVHK 163
++ S+ G L+EA M + + V W +++ HK
Sbjct: 177 NSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHK 220
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 6/181 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE--RTVFTWSAMIQGLAI 58
++H + SGF + V N+L+ Y K G LE A VF M E R +W++MI
Sbjct: 159 QLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQ 218
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
H + +AL + M+ G + + T +L + + G + F++ + G +
Sbjct: 219 HKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQ-FHAKAIKTG-FNKNR 276
Query: 119 HYGC-MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDL-AEEASRQLD 176
H G ++D+ ++ G + + VVW ++ G +K + + A E RQ+
Sbjct: 277 HVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQ 336
Query: 177 Q 177
+
Sbjct: 337 R 337
>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
Length = 687
Score = 329 bits (844), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 166/332 (50%), Positives = 224/332 (67%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G +CN LIDMY KCG ++ +R+VF M R + +W+ MI G IHG KEA F
Sbjct: 356 GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALF 415
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+M +G P+GVTFI LL AC H G V EG+ +F+ M YG+ P++EHY CMVDLLSR
Sbjct: 416 LEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSR 475
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
GFL EAYEFI++MP++ + VW ALLG CRV+KNIDL ++ SR + +L P G V+L
Sbjct: 476 GGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLL 535
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
SNIY+ A R+++ A VR + + G KK+PG S I ++G +H FV GD++HPQ+ +I++
Sbjct: 536 SNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYREL 595
Query: 250 EKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNL 309
+ +L G+K GY P+TS VL D+EE+EKEK L HSEKLA+ +G+++ I + KNL
Sbjct: 596 DNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNL 655
Query: 310 RVCEDCHAAFKLISEIVNREIVVRDRNRFHCF 341
RVC DCH K IS + R I+VRD NRFH F
Sbjct: 656 RVCGDCHTVIKHISLVKRRAIIVRDANRFHHF 687
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 91/181 (50%), Gaps = 5/181 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SG ++ N+L+ MY K G ++ A +F EM + ++SA++ G +G
Sbjct: 246 QLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNG 305
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+EA F KM ++P+ T + L+ AC H+ + GR S+ G+ +
Sbjct: 306 RAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASETSIC 364
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
++D+ ++ G + + + MP + + V W ++ G +H L +EA+ +++
Sbjct: 365 NALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIH---GLGKEATALFLEMNN 420
Query: 181 L 181
L
Sbjct: 421 L 421
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 12/168 (7%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ +G + ++ V L+DMYVKC CL A +F M R + W+AM+ G A HG
Sbjct: 32 IHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGM 91
Query: 62 AKEALTSFNKM-IEIG-IKPNGVTFIGLLHACGHMGWVDEGRR---------FFYSMTTE 110
A+ M +++ ++PN T + LL G + +G + ++
Sbjct: 92 YHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSK 151
Query: 111 YGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ + ++D+ ++ G L A MP + N V W AL+GG
Sbjct: 152 SKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR-NEVTWSALIGG 198
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 7/156 (4%)
Query: 6 SNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEA 65
+++S + + L+DMY KCG L ARRVF M R TWSA+I G + + +A
Sbjct: 149 NSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQA 208
Query: 66 LTSFNKMIEIG---IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC 122
F M+ G + P + L AC + + G + +++ + G+ +
Sbjct: 209 FLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMGEQ-LHALLAKSGVHADLTAGNS 265
Query: 123 MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + ++AG + +A M +K + V + AL+ G
Sbjct: 266 LLSMYAKAGLIDQAIALFDEMAVK-DTVSYSALVSG 300
>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 934
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 152/352 (43%), Positives = 230/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + GF N V N +DMY KCG ++ R+ + R+ +W+ +I LA HG
Sbjct: 583 QLHSLIIKHGFESNDYVLNATMDMYGKCGEIDDVFRILPQPRSRSQRSWNILISALARHG 642
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++A +F++M+++G++P+ VTF+ LL AC H G VDEG +F SM+T++G+ IEH
Sbjct: 643 FFQQAREAFHEMLDLGLRPDHVTFVSLLSACSHGGLVDEGLAYFSSMSTKFGVPTGIEHC 702
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C++DLL RAG L EA FI MP+ P +VW +LL C++H N++LA +A+ +L +LD
Sbjct: 703 VCIIDLLGRAGKLTEAENFINKMPVPPTDLVWRSLLAACKIHGNLELARKAADRLFELDS 762
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+ SN+ A RW DV VRK M + +KK P S + + V F GD+ HP
Sbjct: 763 SDDSAYVLYSNVCASTRRWRDVENVRKQMESHNIKKKPACSWVKLKNQVTTFGMGDQYHP 822
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q +I+ E+L ++ GY+P+TS L D +E++KE L+ HSE++AL FGL+N+ G
Sbjct: 823 QNAEIYAKLEELKKIIREAGYMPDTSYSLQDTDEEQKEHNLWNHSERIALAFGLINSSEG 882
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+P+RI KNLRVC DCH+ FK++S+I+ R+I++RD RFH F +G CSC DYW
Sbjct: 883 SPLRIFKNLRVCGDCHSVFKMVSQIIGRKIILRDAYRFHHFSSGKCSCSDYW 934
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 5/164 (3%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
+SG N+ VCN+L+ MY + G E A VF +M ER + +W++M+ +G AL
Sbjct: 289 KSGLESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALE 348
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
+M++ N VTF L AC ++ E + ++ G+ + +V +
Sbjct: 349 LLIEMLQTRKATNYVTFTTALSACYNL----ETLKIVHAFVILLGLHHNLIIGNALVTMY 404
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
+ G + A + MP + + V W AL+GG +K + A EA
Sbjct: 405 GKFGSMAAAQRVCKIMPDR-DEVTWNALIGGHADNKEPNAAIEA 447
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 76/151 (50%), Gaps = 2/151 (1%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
+SG + V N+LI M+ C +E A VF +M+ER +W+++I +G +++L
Sbjct: 188 KSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLE 247
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F++M K + +T LL CG + GR + M + G+ + ++ +
Sbjct: 248 YFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRG-LHGMVVKSGLESNVCVCNSLLSMY 306
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
S+AG ++A EF+ + + + + W +++
Sbjct: 307 SQAGKSEDA-EFVFHKMRERDLISWNSMMAS 336
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + G N+ + N L+ MY K G + A+RV M +R TW+A+I G A + +
Sbjct: 381 VHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHADNKE 440
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHA 90
A+ +FN + E G+ N +T + LL A
Sbjct: 441 PNAAIEAFNLLREEGVPVNYITIVNLLSA 469
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 24 MYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVT 83
MY K G +E A+ VF +M ER +W+ ++ G G ++A+ F M+E G++P+
Sbjct: 1 MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60
Query: 84 FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM 143
L+ AC G + EG ++ + G+ + ++ G++ E + +
Sbjct: 61 AASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEI 120
Query: 144 PIKPNGVVWGALLGG 158
+PN V W +L+ G
Sbjct: 121 E-EPNIVSWTSLMVG 134
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 47/92 (51%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + G ++ V +L+ Y G + VF E+EE + +W++++ G A +G
Sbjct: 80 QVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIEEPNIVSWTSLMVGYAYNG 139
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACG 92
KE ++ + ++ G+ N ++ +CG
Sbjct: 140 CVKEVMSVYRRLRRDGVYCNENAMATVIRSCG 171
>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
Length = 818
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 156/353 (44%), Positives = 226/353 (64%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++S N+ V NTLI+MY +CG LE A R+F +E+TV +W+AM+ + +G+
Sbjct: 466 LHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGR 525
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL F +M G+KP+ VT+ +L C H G +++G R+F M +G+ P +H+
Sbjct: 526 YAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFA 585
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
MVDLL R+G L +A E + +MP +P+ V W L CR+H ++L E A+ ++ +LDP
Sbjct: 586 AMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPS 645
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ ++ +SNIYA WE VA VRK M G+KK PG S I VDG +HEF +G + HP+
Sbjct: 646 STAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPR 705
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNT-PPG 300
++I + +L M+ GY+P+T VL D+ E EKE L HSEK+A+ FGL+++ G
Sbjct: 706 TDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSG 765
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQA-GSCSCGDYW 352
PIR++KNLRVC DCH A K I+ I R+I++RD NRFH F + G CSCGDYW
Sbjct: 766 EPIRVVKNLRVCSDCHTATKFIARIAGRDIILRDCNRFHRFSSDGKCSCGDYW 818
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 2/178 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +GF ++ V LI+MY KCG AR VF +M++R + +W+ MI +G
Sbjct: 228 KIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNG 287
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL + K+ G K TF+ +L AC + + +G R +S E G+ ++
Sbjct: 288 DFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQG-RLVHSHILERGLDSEVAVA 346
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+V++ ++ G L+EA + M + + V W L+G + A +A + D+L
Sbjct: 347 TALVNMYAKCGSLEEARKVFNAMKNR-DAVAWSTLIGAYASNGYGKDARKARKVFDRL 403
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 43/227 (18%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + G + V L++MY KCG LE AR+VF M+ R WS +I A +G
Sbjct: 330 VHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGY 389
Query: 62 AKEALTS--------------FNKMIEI---------------------GIKPNGVTFIG 86
K+A + +N MI G+KP+ VTFI
Sbjct: 390 GKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIA 449
Query: 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIK 146
+L AC +G + E + ++ +E + + ++++ +R G L+EA E + +
Sbjct: 450 VLEACASLGRLSE-VKALHAQISESELESNVVVTNTLINMYARCGSLEEA-ERLFAAAKE 507
Query: 147 PNGVVWGALLGGC----RVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
V W A++ R + +DL +E L+ + P + Y +L
Sbjct: 508 KTVVSWTAMVAAFSQYGRYAEALDLFQEM--DLEGVKPDDVTYTSIL 552
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 80/161 (49%), Gaps = 15/161 (9%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME--ERTVFTWSAMIQGLAIH 59
+HE S F R+ V N LI MY KC L AR VF M+ +R V +W+AMI A +
Sbjct: 29 LHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQN 88
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR----RFFYSMTTEYGIIP 115
G + EAL + +M G+ + VTF+ +L AC + +GR R FYS + +
Sbjct: 89 GHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLA---QGREIHNRVFYSGLDSFQSLA 145
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
+V + +R G + +A +++ + + W A++
Sbjct: 146 N-----ALVTMYARFGSVGDAKRMFQSLQTR-DETSWNAVI 180
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 7/177 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H SG + N L+ MY + G + A+R+F ++ R +W+A+I + G
Sbjct: 129 IHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGD 188
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AL F +M + +KPN T+I ++ + EGR+ + G +
Sbjct: 189 WSGALRIFKEM-KCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVAN-GFDSDLVVAT 246
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAE--EASRQLD 176
++++ + G EA E M K + V W ++ GC V +N D E E ++LD
Sbjct: 247 ALINMYGKCGSSHEAREVFDKMK-KRDMVSWNVMI-GCYV-QNGDFHEALELYQKLD 300
>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
Length = 770
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 153/355 (43%), Positives = 229/355 (64%), Gaps = 6/355 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + +SGF ++ V + L++MY KCGC++ A + F+EM RT TW++MI G + HG
Sbjct: 414 QIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHG 473
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q +EA+ F +M G++PN +TF+ LL AC + G V+E +F M EY I P ++HY
Sbjct: 474 QPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHY 533
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCM+D+ R G +++A+ FI+ +PN +W +L+ GCR H N++LA A+ +L +L P
Sbjct: 534 GCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKP 593
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMR--NLGVKKTPGWSSITVDGVVHEFVAGDET 238
+++L N+Y ERW+DVARVRKLM+ ++G+ + W IT+ V+ F A D T
Sbjct: 594 KGIETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSW--ITIKDKVYFFRANDRT 651
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKF--LYRHSEKLALTFGLMN 296
HPQA +++Q+ E LL+ K GY P + L D E+ EK L HSE+LA+ GL+
Sbjct: 652 HPQATELYQLLENLLEKAKAIGYEPYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQ 711
Query: 297 TPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDY 351
TPPG +R+ KN+ +C DCH++ KL S + NREI+VRD R H F+ G CSCGD+
Sbjct: 712 TPPGATVRVTKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGRCSCGDF 766
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 2/158 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + ++G ++ V +L++ Y++C ARR+F M ER V TW+A++ G ++ Q
Sbjct: 100 VHGHMAKTGASADMFVATSLVNAYMRCSAARDARRLFDGMPERNVVTWTALVTGYTLNSQ 159
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
L F +M+E+G P+ T L+AC VD G++ + +YG
Sbjct: 160 PALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQ-VHGYAIKYGAESITSMGN 218
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
+ L ++ G L A +P K N + W ++ C
Sbjct: 219 SLCSLYAKLGSLDSALRAFWRIPEK-NVITWTTMISAC 255
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 141/324 (43%), Gaps = 72/324 (22%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLA-IH 59
+V +S + G N+ V N+ + +Y++ G + A R+F +ME+ ++ TW+AMI G A I
Sbjct: 302 QVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIM 361
Query: 60 GQAK----------EALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTT 109
AK +ALT F + +KP+ TF +L C M +++G + ++ T
Sbjct: 362 DSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQ-IHAQTI 420
Query: 110 EYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP------------------------- 144
+ G + + +V++ ++ G +Q+A + MP
Sbjct: 421 KSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQ 480
Query: 145 ---------IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL------DPLNNGYHVVL 189
++PN + + +LL C L EEA D + +P+ + Y ++
Sbjct: 481 LFEEMRLAGVRPNEITFVSLLSACSY---AGLVEEAEHYFDMMKKEYCIEPVVDHYGCMI 537
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPG-WSSITVDGVVHEFVAGDETHPQAEKIFQM 248
+++ R ED ++ G + WSS+ VAG +H E F
Sbjct: 538 -DMFVRLGRVEDAF---SFIKRTGFEPNEAIWSSL---------VAGCRSHGNMELAFYA 584
Query: 249 WEKLLDGMKLKGYIPNTSVVLLDI 272
+KLL+ +K KG T ++LL++
Sbjct: 585 ADKLLE-LKPKGI--ETYILLLNM 605
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 124/320 (38%), Gaps = 68/320 (21%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y+ + G + N+L +Y K G L+ A R F + E+ V TW+ MI A
Sbjct: 200 QVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDE 259
Query: 61 QAKE-ALTSFNKMIEIGIKPNGVTFIGLLHACG--------------------------- 92
+ E ++ F M+ G+ PN T ++ CG
Sbjct: 260 ECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVK 319
Query: 93 --------HMGWVDEGRRFFYSMTTEYGII--PQIEHYGCMV-----DLLSRA-GFLQEA 136
G DE R F M I I Y ++ DL +R+ GF +A
Sbjct: 320 NSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGF--QA 377
Query: 137 YEFIRNMP---IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN-GYHVVLSNI 192
R++ +KP+ + ++L C ++ E+ Q + L++ + L N+
Sbjct: 378 LTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNM 437
Query: 193 YAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKL 252
Y + +D K + + W+S+ ++G H Q ++ Q++E+
Sbjct: 438 YNKCGCIQD---ANKAFLEMPTRTFVTWTSM---------ISGYSQHGQPQEAIQLFEE- 484
Query: 253 LDGMKLKGYIPN--TSVVLL 270
M+L G PN T V LL
Sbjct: 485 ---MRLAGVRPNEITFVSLL 501
>gi|297800868|ref|XP_002868318.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
lyrata]
gi|297314154|gb|EFH44577.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
lyrata]
Length = 1057
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 155/353 (43%), Positives = 226/353 (64%), Gaps = 2/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH GF + + N LIDMY KC + A+ +F M R V +W+++I G+A HG
Sbjct: 196 QVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHG 255
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
QA++AL +++M+ G+KPN VTF+GL++AC H+G+V +GR F SMT +YGI P ++HY
Sbjct: 256 QAEKALALYDEMVSHGVKPNEVTFVGLIYACSHVGFVAKGRELFQSMTKDYGIRPSLQHY 315
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL-DQLD 179
C++DLL R+G L EA I MP P+ W ALL C+ + + L
Sbjct: 316 TCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGQGQMGVRIADHLVSSFK 375
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P + +++LSNIYA A W V+ R+ + ++ V+K PG+SS+ V F AG+ +H
Sbjct: 376 PKDPSTYILLSNIYASASLWGKVSEARRKLGDMEVRKDPGYSSVEVRKETEVFYAGETSH 435
Query: 240 PQAEKIFQMWEKLLDGMKLK-GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
E IF++ +KL + M+++ GY+P+TS +L D++E+EKEK L+ HSE+ A+ +GL+
Sbjct: 436 ALKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAV 495
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDY 351
PGTPIRI+KNLRVC DCH K ISEI REI+VRD R+H F+ G CSC D+
Sbjct: 496 PGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDF 548
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V EYSN V ++L+DMY KC L+ A+ VF + + +W+AM+ G A G+
Sbjct: 70 VSEYSNDD------VVKSSLVDMYAKCRLLDCAKAVFDSIRVKNTISWTAMVSGYAKSGR 123
Query: 62 AKEALTSFNKM 72
+EAL F ++
Sbjct: 124 KEEALELFRRL 134
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 14 NIRVCNT-----LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
+IRV NT ++ Y K G E A +F + + +++W+A+I G G+ EA +
Sbjct: 102 SIRVKNTISWTAMVSGYAKSGRKEEALELFRRLPVKNLYSWTALISGFVQSGKGLEAFSV 161
Query: 69 FNKM----IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMV 124
F +M ++I + P + ++ AC ++ GR+ + + G + ++
Sbjct: 162 FTEMRRERVDI-LDP--LVLSSIVGACANLAASIAGRQ-VHGLVIALGFDSCVFISNALI 217
Query: 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
D+ ++ + A + M + + V W +L+ G H AE+A D++
Sbjct: 218 DMYAKCSDVIAAKDIFSRMRHR-DVVSWTSLIVGMAQHGQ---AEKALALYDEM 267
>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
Length = 730
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 153/355 (43%), Positives = 229/355 (64%), Gaps = 6/355 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + +SGF ++ V + L++MY KCGC++ A + F+EM RT TW++MI G + HG
Sbjct: 374 QIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHG 433
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q +EA+ F +M G++PN +TF+ LL AC + G V+E +F M EY I P ++HY
Sbjct: 434 QPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHY 493
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCM+D+ R G +++A+ FI+ +PN +W +L+ GCR H N++LA A+ +L +L P
Sbjct: 494 GCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKP 553
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMR--NLGVKKTPGWSSITVDGVVHEFVAGDET 238
+++L N+Y ERW+DVARVRKLM+ ++G+ + W IT+ V+ F A D T
Sbjct: 554 KGIETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSW--ITIKDKVYFFRANDRT 611
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKF--LYRHSEKLALTFGLMN 296
HPQA +++Q+ E LL+ K GY P + L D E+ EK L HSE+LA+ GL+
Sbjct: 612 HPQATELYQLLENLLEKAKAIGYEPYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQ 671
Query: 297 TPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDY 351
TPPG +R+ KN+ +C DCH++ KL S + NREI+VRD R H F+ G CSCGD+
Sbjct: 672 TPPGATVRVTKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGRCSCGDF 726
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 141/324 (43%), Gaps = 72/324 (22%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLA-IH 59
+V +S + G N+ V N+ + +Y++ G + A R+F +ME+ ++ TW+AMI G A I
Sbjct: 262 QVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIM 321
Query: 60 GQAK----------EALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTT 109
AK +ALT F + +KP+ TF +L C M +++G + ++ T
Sbjct: 322 DSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQ-IHAQTI 380
Query: 110 EYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP------------------------- 144
+ G + + +V++ ++ G +Q+A + MP
Sbjct: 381 KSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQ 440
Query: 145 ---------IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL------DPLNNGYHVVL 189
++PN + + +LL C L EEA D + +P+ + Y ++
Sbjct: 441 LFEEMRLAGVRPNEITFVSLLSACSY---AGLVEEAEHYFDMMKKEYCIEPVVDHYGCMI 497
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPG-WSSITVDGVVHEFVAGDETHPQAEKIFQM 248
+++ R ED ++ G + WSS+ VAG +H E F
Sbjct: 498 -DMFVRLGRVEDAF---SFIKRTGFEPNEAIWSSL---------VAGCRSHGNMELAFYA 544
Query: 249 WEKLLDGMKLKGYIPNTSVVLLDI 272
+KLL+ +K KG T ++LL++
Sbjct: 545 ADKLLE-LKPKGI--ETYILLLNM 565
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH 93
ARR+F M ER V TW+A++ G ++ Q L F +M+E+G P+ T L+AC
Sbjct: 92 ARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLA 151
Query: 94 MGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWG 153
VD G++ + +YG + L ++ G L A +P K N + W
Sbjct: 152 SCDVDLGKQ-VHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEK-NVITWT 209
Query: 154 ALLGGC 159
++ C
Sbjct: 210 TMISAC 215
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 120/312 (38%), Gaps = 66/312 (21%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y+ + G + N+L +Y K G L+ A R F + E+ V TW+ MI A
Sbjct: 160 QVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDE 219
Query: 61 QAKE-ALTSFNKMIEIGIKPNGVTFIGLLHACG--------------------------- 92
+ E ++ F M+ G+ PN T ++ CG
Sbjct: 220 ECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVK 279
Query: 93 --------HMGWVDEGRRFFYSMTTEYGII--PQIEHYGCMV-----DLLSRA-GFLQEA 136
G DE R F M I I Y ++ DL +R+ GF +A
Sbjct: 280 NSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGF--QA 337
Query: 137 YEFIRNMP---IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN-GYHVVLSNI 192
R++ +KP+ + ++L C ++ E+ Q + L++ + L N+
Sbjct: 338 LTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNM 397
Query: 193 YAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKL 252
Y + +D K + + W+S+ ++G H Q ++ Q++E+
Sbjct: 398 YNKCGCIQD---ANKAFLEMPTRTFVTWTSM---------ISGYSQHGQPQEAIQLFEE- 444
Query: 253 LDGMKLKGYIPN 264
M+L G PN
Sbjct: 445 ---MRLAGVRPN 453
>gi|115440727|ref|NP_001044643.1| Os01g0819800 [Oryza sativa Japonica Group]
gi|21104789|dbj|BAB93376.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113534174|dbj|BAF06557.1| Os01g0819800 [Oryza sativa Japonica Group]
Length = 646
Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 158/344 (45%), Positives = 224/344 (65%), Gaps = 1/344 (0%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GFR N+ +CN LI+ + +CG L A+ +F EM ER+V +W+ +I G +HGQ A+ F
Sbjct: 303 GFRDNLPLCNALINFHARCGSLAQAQELFDEMPERSVVSWTTLIIGYGMHGQGDIAVDLF 362
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
M+ P+ V +GLL AC H G DEGR++F +M +Y + P++EHY CMVDLL R
Sbjct: 363 ETMVSEATAPDSVAMVGLLSACSHAGMYDEGRKYFSTMERDYCLRPKLEHYTCMVDLLGR 422
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
AG L EA E I +MP+ +G VWGALLG C++HKN+++ EEA ++ L+P N GY+V++
Sbjct: 423 AGRLDEARELIASMPMAADGAVWGALLGACKIHKNVEMGEEAFERVVSLEPANVGYYVLM 482
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
+NIYA+A + + VA+VR MR G++K PG S + G VH F+A D +HPQA +I+++
Sbjct: 483 ANIYADAGQLDGVAKVRAAMRRRGLRKEPGCSYVEHKGKVHLFMADDHSHPQARRIYELV 542
Query: 250 EKLLDGMKLK-GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKN 308
+L +K K G + E + HSEKLA+ FGL+NT G+ I ++KN
Sbjct: 543 VELERMVKEKTGGDVVEERAEKAVAEAAAVPLVGFHSEKLAVAFGLLNTEAGSEIVVIKN 602
Query: 309 LRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
LRVC DCH+ K ISE+ NR +VRD +RFH F+ G+CSC DYW
Sbjct: 603 LRVCGDCHSFLKTISELTNRAFLVRDASRFHRFENGACSCRDYW 646
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 9/176 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGC--LEGARRVFIEME--ERTVFTWSAMIQGL 56
++H + +SG N V N L+ +Y + G AR+VF EM R + +W+A+I
Sbjct: 184 QLHALAARSGLAANTSVANCLVSVYARGGGGGASLARQVFEEMPRASRDLVSWNAVISAH 243
Query: 57 AIHGQAKEALTSFNKMIEI---GIKPNGVTFIGLLHACGHMGWVDEGRRF-FYSMTTEYG 112
A +G A EA+ + +M G++P+ VT +G+L +C H G G Y T G
Sbjct: 244 AQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSCAHTGARRVGLDVERYVRDTIPG 303
Query: 113 IIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
+ +++ +R G L +A E MP + + V W L+ G +H D+A
Sbjct: 304 FRDNLPLCNALINFHARCGSLAQAQELFDEMPER-SVVSWTTLIIGYGMHGQGDIA 358
>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
Length = 724
Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 157/324 (48%), Positives = 220/324 (67%), Gaps = 1/324 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + +SG + + NTL+DMY K G ++ A+RVF + + V +W+ M+ G A HG
Sbjct: 312 VHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGL 371
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KE L F +M+ IGI+PN ++F+ +L AC H G +DEG +++ + +Y + P + HY
Sbjct: 372 GKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGL-YYFELMKKYKVEPDVPHYV 430
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
VDLL R G L A FIR MPI+P VWGALLG CR+HKN++L A+ + +LDP
Sbjct: 431 TFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPH 490
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G ++LSNIYA A RW DVA+VRK+M+ GVKK P S + ++ VH FVA DETHPQ
Sbjct: 491 DSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPQ 550
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I WE++ +K GY+P+TS VLL ++++E+E+ L HSEKLAL F L+NTP G+
Sbjct: 551 IKEIRGKWEEISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGS 610
Query: 302 PIRIMKNLRVCEDCHAAFKLISEI 325
PIRI KN+RVC DCHAA K +S+I
Sbjct: 611 PIRIKKNIRVCGDCHAAIKFVSKI 634
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 2 VHEYSNQSGFRRNIRVC-NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
VH + S F N V N +++MY KCGCL+ ARR+F EM + + TW+A+I G + +
Sbjct: 109 VHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNN 168
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ ++AL F +M+ +G++PN T LL A G +D G + ++ +YG +
Sbjct: 169 RPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQ-LHAFCLKYGYQSSVYVG 227
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ +R G + A MP K + V W AL+ G
Sbjct: 228 SALVDMYARCGHMDAAQLAFDGMPTK-SEVSWNALISG 264
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 86/162 (53%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G++ ++ V + L+DMY +CG ++ A+ F M ++ +W+A+I G A G
Sbjct: 210 QLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKG 269
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ + AL KM +P T+ + AC +G +++G ++ ++ + G+
Sbjct: 270 EGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQG-KWVHAHMIKSGLKLIAFIG 328
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++AG + +A + +KP+ V W +L GC H
Sbjct: 329 NTLLDMYAKAGSIDDAKRVFDRL-VKPDVVSWNTMLTGCAQH 369
>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 159/354 (44%), Positives = 226/354 (63%), Gaps = 5/354 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ SG N+ + +L++M+ +CG + AR VF M E V W+AMI G +HG
Sbjct: 231 LHDCIVGSGITMNVVLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYGMHGY 290
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ F++M G+ PN VTF+ +L AC H G +DEGR F SM EYG++P +EH+
Sbjct: 291 GVEAMEVFHRMKARGVVPNSVTFVAVLSACAHAGLIDEGRSVFASMKQEYGVVPGVEHHV 350
Query: 122 CMVDLLSRAGFLQEAYEFIRNM---PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
CMVD+ R G L EAY+F++ + + P VW A+LG C++HKN DL E + L
Sbjct: 351 CMVDMFGRGGLLNEAYQFVKGLNSDELVP--AVWTAMLGACKMHKNFDLGVEVAENLINA 408
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
+P N G++V+LSN+YA A R + V VR +M G+KK G+S+I VD + F GD++
Sbjct: 409 EPENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVDNRSYLFSMGDKS 468
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
HP+ +I+ ++L+ K GY P + ++E +E+E L HSEKLA+ FGLM T
Sbjct: 469 HPETNEIYCFLDELIWRCKDAGYAPVPESAMHELEGEEREYALRYHSEKLAVAFGLMKTG 528
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G +RI+KNLR+CEDCH+A K IS ++NREI+VRD+ RFH F+ GSCSC DYW
Sbjct: 529 DGVTLRIVKNLRICEDCHSAIKFISAVMNREIIVRDKLRFHHFREGSCSCSDYW 582
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 2/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + SG+ + V LI Y K AR+VF EM +R++ W++MI G +G
Sbjct: 130 VHSHVFVSGYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGL 189
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A EA+ FNKM E ++P+ TF+ +L AC +G +D G + + GI +
Sbjct: 190 ANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFG-CWLHDCIVGSGITMNVVLAT 248
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+V++ SR G + A +M I+ N V+W A++ G +H
Sbjct: 249 SLVNMFSRCGDVGRARAVFYSM-IEGNVVLWTAMISGYGMH 288
>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
Length = 770
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 153/355 (43%), Positives = 229/355 (64%), Gaps = 6/355 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + +SGF ++ V + L++MY KCGC++ A + F+EM RT TW++MI G + HG
Sbjct: 414 QIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHG 473
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q +EA+ F +M G++PN +TF+ LL AC + G V+E +F M EY I P ++HY
Sbjct: 474 QPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHY 533
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCM+D+ R G +++A+ FI+ +PN +W +L+ GCR H N++LA A+ +L +L P
Sbjct: 534 GCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKP 593
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMR--NLGVKKTPGWSSITVDGVVHEFVAGDET 238
+++L N+Y ERW+DVARVRKLM+ ++G+ + W IT+ V+ F A D T
Sbjct: 594 KGIETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSW--ITIKDKVYFFRANDRT 651
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKF--LYRHSEKLALTFGLMN 296
HPQA +++Q+ E LL+ K GY P + L D E+ EK L HSE+LA+ GL+
Sbjct: 652 HPQATELYQLLENLLEKAKAIGYEPYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQ 711
Query: 297 TPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDY 351
TPPG +R+ KN+ +C DCH++ KL S + NREI+VRD R H F+ G CSCGD+
Sbjct: 712 TPPGATVRVTKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGRCSCGDF 766
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 2/158 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + ++G ++ V +L++ Y++CG ARR+F M ER V TW+A++ G ++ Q
Sbjct: 100 VHGHMAKTGAGADMFVATSLVNAYMRCGAARDARRLFDGMPERNVVTWTALVTGYTLNSQ 159
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
L F +M+E+G P+ T L+AC VD G++ + +YG
Sbjct: 160 PALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQ-VHGYAIKYGAESITSMGN 218
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
+ L ++ G L A +P K N + W ++ C
Sbjct: 219 SLCSLYAKLGSLDSALRAFWRIPEK-NVITWTTMISAC 255
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 141/324 (43%), Gaps = 72/324 (22%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLA-IH 59
+V +S + G N+ V N+ + +Y++ G + A R+F +ME+ ++ TW+AMI G A I
Sbjct: 302 QVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIM 361
Query: 60 GQAK----------EALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTT 109
AK +ALT F + +KP+ TF +L C M +++G + ++ T
Sbjct: 362 DSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQ-IHAQTI 420
Query: 110 EYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP------------------------- 144
+ G + + +V++ ++ G +Q+A + MP
Sbjct: 421 KSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQ 480
Query: 145 ---------IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL------DPLNNGYHVVL 189
++PN + + +LL C L EEA D + +P+ + Y ++
Sbjct: 481 LFEEMRLAGVRPNEITFVSLLSACSY---AGLVEEAEHYFDMMKKEYCIEPVVDHYGCMI 537
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPG-WSSITVDGVVHEFVAGDETHPQAEKIFQM 248
+++ R ED ++ G + WSS+ VAG +H E F
Sbjct: 538 -DMFVRLGRVEDAF---SFIKRTGFEPNEAIWSSL---------VAGCRSHGNMELAFYA 584
Query: 249 WEKLLDGMKLKGYIPNTSVVLLDI 272
+KLL+ +K KG T ++LL++
Sbjct: 585 ADKLLE-LKPKGI--ETYILLLNM 605
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 124/320 (38%), Gaps = 68/320 (21%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y+ + G + N+L +Y K G L+ A R F + E+ V TW+ MI A
Sbjct: 200 QVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDE 259
Query: 61 QAKE-ALTSFNKMIEIGIKPNGVTFIGLLHACG--------------------------- 92
+ E L+ F M+ G+ PN T ++ CG
Sbjct: 260 ECVELGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVK 319
Query: 93 --------HMGWVDEGRRFFYSMTTEYGII--PQIEHYGCMV-----DLLSRA-GFLQEA 136
G DE R F M I I Y ++ DL +R+ GF +A
Sbjct: 320 NSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGF--QA 377
Query: 137 YEFIRNMP---IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN-GYHVVLSNI 192
R++ +KP+ + ++L C ++ E+ Q + L++ + L N+
Sbjct: 378 LTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNM 437
Query: 193 YAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKL 252
Y + +D K + + W+S+ ++G H Q ++ Q++E+
Sbjct: 438 YNKCGCIQD---ANKAFLEMPTRTFVTWTSM---------ISGYSQHGQPQEAIQLFEE- 484
Query: 253 LDGMKLKGYIPN--TSVVLL 270
M+L G PN T V LL
Sbjct: 485 ---MRLAGVRPNEITFVSLL 501
>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
Length = 818
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 156/353 (44%), Positives = 225/353 (63%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++S N+ V NTLI+MY +CG LE A R+F +E+TV +W+AM+ + +G+
Sbjct: 466 LHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGR 525
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL F +M G+KP+ VT+ +L C H G +++G R+F M + + P +H+
Sbjct: 526 YAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFA 585
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
MVDLL R+G L +A E + +MP +P+ V W L CR+H ++L E A+ ++ +LDP
Sbjct: 586 AMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPS 645
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ ++ +SNIYA WE VA VRK M G+KK PG S I VDG +HEF +G + HP+
Sbjct: 646 STAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPR 705
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNT-PPG 300
++I + +L M+ GY+P+T VL D+ E EKE L HSEK+A+ FGL+++ G
Sbjct: 706 TDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSG 765
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQA-GSCSCGDYW 352
PIR++KNLRVC DCH A K I+ I R+I+VRD NRFH F + G CSCGDYW
Sbjct: 766 EPIRVVKNLRVCSDCHTATKFIARIAGRDIIVRDCNRFHRFSSDGKCSCGDYW 818
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 2/178 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +GF ++ V LI+MY KCG AR VF +M++R + +W+ MI ++G
Sbjct: 228 KIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNG 287
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL + K+ G K TF+ +L AC + + +G R +S E G+ ++
Sbjct: 288 DFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQG-RLVHSHILERGLDSEVAVA 346
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+V++ ++ G L+EA + M + + V W L+G + A +A + D+L
Sbjct: 347 TALVNMYAKCGSLEEARKVFNAMKNR-DAVAWSTLIGAYASNGYGKDARKARKVFDRL 403
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 98/227 (43%), Gaps = 43/227 (18%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + G + V L++MY KCG LE AR+VF M+ R WS +I A +G
Sbjct: 330 VHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGY 389
Query: 62 AKEA--------------LTSFNKMIEI---------------------GIKPNGVTFIG 86
K+A S+N MI G+KP+ VTFI
Sbjct: 390 GKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIA 449
Query: 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIK 146
+L AC +G + E + ++ +E + + ++++ +R G L+EA E + +
Sbjct: 450 VLEACASLGRLSE-VKALHAQISESELESNVVVTNTLINMYARCGSLEEA-ERLFAAAKE 507
Query: 147 PNGVVWGALLGGC----RVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
V W A++ R + +DL +E L+ + P + Y +L
Sbjct: 508 KTVVSWTAMVAAFSQYGRYAEALDLFQEM--DLEGVKPDDVTYTSIL 552
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 80/161 (49%), Gaps = 15/161 (9%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME--ERTVFTWSAMIQGLAIH 59
+HE S F R+ V N LI MY KC L AR VF M+ +R V +W+AMI A +
Sbjct: 29 LHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQN 88
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR----RFFYSMTTEYGIIP 115
G + EAL + +M G+ + VTF+ +L AC + +GR R FYS + +
Sbjct: 89 GHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLA---QGREIHNRVFYSGLDSFQSLA 145
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
+V + +R G + +A +++ + + W A++
Sbjct: 146 N-----ALVTMYARFGSVGDAKRMFQSLQTR-DETSWNAVI 180
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 3/175 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H SG + N L+ MY + G + A+R+F ++ R +W+A+I + G
Sbjct: 129 IHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGD 188
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AL F +M + +KPN T+I ++ + EGR+ + G +
Sbjct: 189 WSGALRIFKEM-KCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVAN-GFDTDLVVAT 246
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLD 176
++++ + G EA E M K + V W ++G ++ + A E ++LD
Sbjct: 247 ALINMYGKCGSSHEAREVFDKMK-KRDMVSWNVMIGCYVLNGDFHEALELYQKLD 300
>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
Length = 615
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 155/344 (45%), Positives = 226/344 (65%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
+G +I V NTL++MY KCG + AR VF M E+ V +W+AM+ +G+++EAL
Sbjct: 272 AGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQNGRSREALAL 331
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
F+ M G++PN +TF+ +L+ C H G + F M ++GI P+ H+GC++D+L
Sbjct: 332 FDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVSHFVEMRQDFGITPREVHFGCLIDMLG 391
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVV 188
R+G L+EA E I+ MP+ + V+W +LL C HK+ D A A+ + Q +P +++
Sbjct: 392 RSGKLEEAEELIQAMPVPADAVLWTSLLCACVTHKDEDRAARAAEEAFQREPRCAAAYIM 451
Query: 189 LSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQM 248
LSN+YA ++W++ A+VRK M GV+K G S I +D VHEFVAGD HP +IF+
Sbjct: 452 LSNLYAALKKWDEAAKVRKRMEQAGVRKQAGRSWIEIDKQVHEFVAGDSIHPDKSRIFKT 511
Query: 249 WEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKN 308
++L+ M++KGY P+ VV+ +EE+EK++ L+ HSEKLA+ FG+ +TPP TP+ I+KN
Sbjct: 512 LQRLMSEMRIKGYEPDRKVVIHSMEEEEKDEVLFYHSEKLAVAFGIASTPPRTPLCIVKN 571
Query: 309 LRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
LRVC DCH+A K IS + R I VRD NRFH F G CSCGDYW
Sbjct: 572 LRVCSDCHSAIKFISGVEGRRITVRDSNRFHHFDRGECSCGDYW 615
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H + + R + N L+DMY KCG L A+RVF M+ + VF+W+ ++ G G
Sbjct: 62 RIHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQSG 121
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EA+ F++M + G P+ V + + +CG + +GR +S G+ +
Sbjct: 122 RGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGRE-IHSAAASCGMDSDLVTA 180
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++++ + G + EA+ MP K N + W ++
Sbjct: 181 NAIINMYGKCGSIGEAFAVFTRMPEK-NVISWSTMIAA 217
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G ++ N +I+MY KCG + A VF M E+ V +WS MI +
Sbjct: 164 IHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNEL 223
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A EAL F M + G++ + +T++ +L A +G ++ G+ + G+ I
Sbjct: 224 ADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKALHVRIVYA-GLDTSIVVGN 282
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V++ + G +A + +M ++ N V W A+L
Sbjct: 283 TLVNMYGKCGSPDDARDVFDSM-VEKNVVSWNAMLAA 318
>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
Length = 1008
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 152/352 (43%), Positives = 224/352 (63%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y +SG++ ++ + L+DMY KCGCL+ A R F EM ER +W+A+I A +G
Sbjct: 657 QLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYG 716
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+AK A+ F M+ G P+ VTF+ +L AC H G DE ++F+ M +Y I P EHY
Sbjct: 717 EAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHY 776
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C++D L R G + + + MP K + ++W ++L CR+H N +LA A+ +L ++P
Sbjct: 777 ACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEP 836
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +V+LSNIYA A +WED A V+K+MR+ GV+K G+S + + ++ F + D T P
Sbjct: 837 TDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSP 896
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++I ++L M +GY P+ + L ++ + K + L HSE+LA+ F LMNTP G
Sbjct: 897 MIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAG 956
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
TPIRIMKNL C DCHA K+IS+IVNR+I+VRD RFH F+ G CSCGDYW
Sbjct: 957 TPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 1008
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 2/140 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N LIDMY KCG L+ A+ F E++ +W+A+I G +GQ +EAL F+ M G++
Sbjct: 574 NALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLR 633
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ TF ++ A + + GR+ +S G + +VD+ ++ G L EA
Sbjct: 634 PDRATFSSIIKASSSLAMIGLGRQ-LHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALR 692
Query: 139 FIRNMPIKPNGVVWGALLGG 158
MP + N + W A++
Sbjct: 693 TFDEMPER-NSISWNAVISA 711
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 2/145 (1%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
N+ V N+L+D Y KC CL+ RR+F EM ER +++ +I A + A L F +M
Sbjct: 468 NVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQ 527
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
++G + + +L G + V G++ ++ G+ + ++D+ S+ G L
Sbjct: 528 KLGFDRQVLPYATMLSVAGSLPDVHIGKQ-IHAQLVLLGLASEDLLGNALIDMYSKCGML 586
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGG 158
A N K + + W AL+ G
Sbjct: 587 DAAKSNFSNRSEK-SAISWTALITG 610
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ + G ++ VCNTL+D Y K G L ARRVF+EM ++ T++AM+ G + G
Sbjct: 371 LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGL 430
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHA 90
+AL F M G + + + H+
Sbjct: 431 HTQALQLFAAMRRAGYSRHPLHLLQYSHS 459
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 74/336 (22%), Positives = 129/336 (38%), Gaps = 63/336 (18%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+NI N ++ Y G L A+ +F+ R TW+ M++ A G+ +AL+ F M
Sbjct: 286 KNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAM 345
Query: 73 IEIGIKPNGVTFIGLLHA-------------------------------CGHMGWVDEGR 101
+ G+ P+ VT +L+ C H G + R
Sbjct: 346 LGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKH-GLLAAAR 404
Query: 102 RFFYSMTTEYGIIPQIEHYGC-----------MVDLLSRAGF-------LQEAYEFIRNM 143
R F M + + GC + + RAG+ LQ ++ R+
Sbjct: 405 RVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHPLHLLQYSHSRSRST 464
Query: 144 PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVA 203
+ N V +LL + D ++ R D++ +N + V+ YA + V
Sbjct: 465 SVL-NVFVNNSLLD---FYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVL 520
Query: 204 RVRKLMRNLGVKKT--PGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGY 261
R+ + M+ LG + P + ++V G + + G + H Q + E LL + Y
Sbjct: 521 RLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMY 580
Query: 262 IPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNT 297
+ +LD K F R SEK A+++ + T
Sbjct: 581 ---SKCGMLD---AAKSNFSNR-SEKSAISWTALIT 609
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 156/351 (44%), Positives = 232/351 (66%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G+ ++ V L+DMY KCG L A+ +F + ++ + +W+ MI G +HG
Sbjct: 794 IHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGF 853
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+++FN+M GI+P+ +F +L+AC H G ++EG +FF SM E G+ P++EHY
Sbjct: 854 GNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYA 913
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL+R G L +AY+FI +MPIKP+ +WG LL GCR+H ++ LAE+ + + +L+P
Sbjct: 914 CVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPD 973
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N Y+VVL+N+YAEAE+WE+V ++RK M+ G K+ PG S I V G + FVAG+ HPQ
Sbjct: 974 NTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQ 1033
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A++I + KL M+ + Y VL++ ++ EKE HSEK A+ FG++N PPG
Sbjct: 1034 AKRIDVLLRKLTMQMQNEDYFSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGR 1093
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+R+ KN RVC DCH K +S+ REIV+RD NRFH F+ G CSC D +
Sbjct: 1094 TVRVSKNQRVCGDCHEMGKFMSKTTKREIVLRDSNRFHHFKDGLCSCRDAF 1144
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + ++ F + NTL+DMY KCG L GA VF++M + T+ +W++ I G
Sbjct: 593 LHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGL 652
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+A+ F++M G++P+ T ++HAC +D+GR +S + G+ +
Sbjct: 653 YSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRD-VHSYVIKNGMGSNLPVTN 711
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++++ ++ G ++EA +P+K + V W ++GG
Sbjct: 712 ALINMYAKCGSVEEARLVFSKIPVK-DIVSWNTMIGG 747
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 96/191 (50%), Gaps = 5/191 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y ++G N+ V N LI+MY KCG +E AR VF ++ + + +W+ MI G + +
Sbjct: 694 VHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSL 753
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL F M + KP+ +T +L AC + +D+GR + G +
Sbjct: 754 PNEALELFLDM-QKQFKPDDITMACVLPACAGLAALDKGRE-IHGHILRRGYFSDLHVAC 811
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH--KNIDLAEEASRQLDQLD 179
+VD+ ++ G L A + + +M K + + W ++ G +H N ++ ++ ++
Sbjct: 812 ALVDMYAKCGLLVLA-QLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIE 870
Query: 180 PLNNGYHVVLS 190
P + + V+L+
Sbjct: 871 PDESSFSVILN 881
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 1/143 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH Y + GF N V N+LI Y K G +E A +F E+ E V +W++MI G ++G
Sbjct: 491 RVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNG 550
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ L F +M+ +G++ + T + +L A ++G + GR + + ++
Sbjct: 551 FSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRA-LHGFGVKACFSEEVVFS 609
Query: 121 GCMVDLLSRAGFLQEAYEFIRNM 143
++D+ S+ G L A E M
Sbjct: 610 NTLLDMYSKCGNLNGATEVFVKM 632
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH +G + + L+ MYV CG L R++F ++ VF W+ ++ A G
Sbjct: 390 RVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIG 449
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+E+++ F KM ++G+ N TF +L +G V E +R + + G
Sbjct: 450 NFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKR-VHGYVLKLGFGSNTAVV 508
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++ + G ++ A+ + +P+ V W +++ GC V+
Sbjct: 509 NSLIAAYFKFGGVESAHNLFDELS-EPDVVSWNSMINGCVVN 549
>gi|297728815|ref|NP_001176771.1| Os12g0128300 [Oryza sativa Japonica Group]
gi|255670010|dbj|BAH95499.1| Os12g0128300 [Oryza sativa Japonica Group]
Length = 587
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 150/333 (45%), Positives = 222/333 (66%)
Query: 20 TLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP 79
L++MY CG L+ A +VF +R ++AM+ GLA+HG + AL+ ++M G+
Sbjct: 255 ALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPV 314
Query: 80 NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEF 139
+GVT + ++ AC H G VDEG +F M E+GI P+IEHYGCM+D+LSRAG L A +
Sbjct: 315 DGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKL 374
Query: 140 IRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERW 199
I M I PN ++ +L+ C +H ++L E+ +L +L+P ++G HV++SN YA RW
Sbjct: 375 IHEMLIVPNAAIYRSLIRACGIHGKLELGEKMIAELMRLEPDDSGNHVLISNFYARTNRW 434
Query: 200 EDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLK 259
ED + RK M+++G+ K PG S + ++GV+HEF+ GD+THP +++I+ M E++ +
Sbjct: 435 EDAKKARKEMKSMGIDKNPGSSLVDINGVLHEFLVGDKTHPASKEIYTMVEEIETRLIEC 494
Query: 260 GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAAF 319
G +TS L D+EE++K L HSE+LA+ F L+ + PG PIRI+KNLRVC DCH +
Sbjct: 495 GRRSSTSSALFDVEEEDKADTLSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHESA 554
Query: 320 KLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
KL+S + REIV+RDR RFH F+ G CSCGD+W
Sbjct: 555 KLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW 587
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 20 TLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLA---------IHGQAKEALTSFN 70
L+ ++ +CG + RRVF + + W+A++ A A L F
Sbjct: 163 ALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLRARDVACATSAADAILELFV 222
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEG 100
+M+ + I+PN +T + ++ ACG +G V G
Sbjct: 223 RMLSLAIEPNEITLVAVIGACGELGAVSHG 252
>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
trifida]
gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
Length = 575
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 158/354 (44%), Positives = 230/354 (64%), Gaps = 3/354 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+H + + F N V LIDMY KCGC++GA VF E E+ V+ W+A+I GLA HG
Sbjct: 223 RIHSFVKEKNFSSNANVSTALIDMYAKCGCIDGALEVFDETLEKDVYVWTAIIAGLASHG 282
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+ F M + +K + +L A + G V EG FF + ++ I P I+HY
Sbjct: 283 LCMKAIEFFENMKKSDVKMDERAITAVLSAYRNAGLVSEGLLFFRRLK-KHKIKPTIQHY 341
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLD--QL 178
GC+VD+L+RAG L++A EFIR MPI+P+ V+W L+ GC++ +++ +E R+L+ +
Sbjct: 342 GCVVDMLTRAGRLKDAEEFIRKMPIEPDAVLWRTLIWGCKILGDVERSERLVRELELLNM 401
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
D + G +V+L N+YA +WE+ A+ R+LM G+ K P S I +DGVVHEF AGD
Sbjct: 402 DSRDTGSYVLLENVYAATGKWEEKAKTRELMYQRGLMKPPACSRIEIDGVVHEFTAGDSR 461
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
H +A +++ E + + ++ +GY P S VLL+I++ EK L HSEKLA++FGL+ +
Sbjct: 462 HDEATAVYEKLEDVEERLRGEGYNPIVSEVLLEIDDDEKASQLLHHSEKLAVSFGLVKSS 521
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PG+ IRI+KNLR CEDCH+ KLIS++ R+I+VRDR RFH F G+CSCGD W
Sbjct: 522 PGSVIRIVKNLRSCEDCHSFMKLISKVYQRDIIVRDRIRFHHFSGGNCSCGDRW 575
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SG + + N LI +Y G A +VF +M +R V +W+++I G +
Sbjct: 122 QIHGLVFKSGVGSDRYINNALIHLYSVSGEPNLAYKVFDKMPDRDVVSWTSIIDGFVDND 181
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EA+ F MIE GI+PN VT +L AC G ++ G R +S E
Sbjct: 182 RPIEAIRLFTHMIENGIEPNEVTVASVLRACADTGALNTGER-IHSFVKEKNFSSNANVS 240
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ ++ G + A E + + ++ + VW A++ G H
Sbjct: 241 TALIDMYAKCGCIDGALE-VFDETLEKDVYVWTAIIAGLASH 281
>gi|357128440|ref|XP_003565881.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Brachypodium distachyon]
Length = 682
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 166/345 (48%), Positives = 224/345 (64%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
++G + VCN L++MY K G + A RVF+ M R V +W+++I G A HG A+EA+
Sbjct: 338 KTGHWGALSVCNALMNMYSKSGSIHDAWRVFLSMPWRDVVSWNSVIIGYAHHGLAREAMC 397
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F+ M+ I P+ VTF+G+L AC +G VDEG + M E GI P EHY CMV LL
Sbjct: 398 VFHDMLLAEIVPSYVTFVGVLLACAQLGLVDEGLYYLNIMMKEMGIKPGREHYTCMVGLL 457
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV 187
RAG L EA +FI + I + V W +LL C+V+KN L + Q+ QL P + G +V
Sbjct: 458 CRAGRLDEAEQFILSNCIGTDVVAWKSLLSSCQVYKNYGLGHRVAEQILQLKPNDVGTYV 517
Query: 188 VLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQ 247
+LSN+YA+A RW+ V +VRKLMR GV+K PG S I V VH F + D+ H +I
Sbjct: 518 LLSNMYAKANRWDGVVKVRKLMRERGVRKEPGVSWIQVGSEVHVFTSEDKNHKWINQITI 577
Query: 248 MWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMK 307
++L+ +K+ GY+PN +VVL D+E ++KE+ L HSEK+AL FGL+++P G IRIMK
Sbjct: 578 KLKELIGQIKVIGYVPNCAVVLHDVEAEQKEEHLMYHSEKMALAFGLIHSPEGETIRIMK 637
Query: 308 NLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
NLR+C+DCH A KLIS + R+IVVRD RFHC G CSC DYW
Sbjct: 638 NLRICDDCHVAIKLISVVTRRKIVVRDTVRFHCIDDGVCSCDDYW 682
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 85/173 (49%), Gaps = 9/173 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + +N+ V + L+DMY KC C A F + E+ V +W+A++ +
Sbjct: 230 QVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAFEVLPEKNVVSWTAVMTAYTQNE 289
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM--TTEYGIIPQIE 118
+ ++AL F + G++PN T+ L++C + + G S T +G +
Sbjct: 290 RFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAALKNGNALSASAMKTGHWGALSVCN 349
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
++++ S++G + +A+ +MP + + V W +++ G H LA EA
Sbjct: 350 ---ALMNMYSKSGSIHDAWRVFLSMPWR-DVVSWNSVIIGYAHH---GLAREA 395
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 74/156 (47%), Gaps = 2/156 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H Y+ +SG + + VCN ++ MY +C +E A +VF + +F +++MI G G
Sbjct: 129 QCHGYAVKSGLQEHPYVCNAVLHMYCQCAHVEDAVKVFENVSGFDIFAFNSMINGFLDLG 188
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ ++ M+ + + V+++ +L C + G + ++ + + +
Sbjct: 189 EFDGSIRIVRSMVGEVEQWDHVSYVAVLGHCASTKELLLGCQ-VHAQALKRRLEQNVYVG 247
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
+VD+ + ++A+ +P K N V W A++
Sbjct: 248 SALVDMYGKCDCARDAHSAFEVLPEK-NVVSWTAVM 282
>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 790
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 158/344 (45%), Positives = 224/344 (65%), Gaps = 1/344 (0%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF ++ N LI MY KCG +E AR+VF M +W+A+I L HG EA+ +
Sbjct: 447 GFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVY 506
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+M++ GI+P+ +T + +L AC H G VD+GR++F SM T Y I P +HY ++DLL R
Sbjct: 507 EEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCR 566
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
+G +A I ++P KP +W ALL GCRVH N++L A+ +L L P ++G +++L
Sbjct: 567 SGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLL 626
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
SN++A +WE+VARVRKLMR+ GVKK S I ++ VH F+ D +HP+AE ++
Sbjct: 627 SNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYL 686
Query: 250 EKLLDGMKLKGYIPNTSVVLLDIE-EKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKN 308
+ L M+ GY+P+TS VL D+E + KE L HSEK+A+ FGLM PPGT IRI KN
Sbjct: 687 QDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKN 746
Query: 309 LRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
LR C DCH F+ +S +V R+I++RDR RFH F+ G CSCG++W
Sbjct: 747 LRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 6/156 (3%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N L+ YV G + A+ +F EM+E+ + +W MI GLA +G +E L F+ M G +
Sbjct: 355 NALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFE 414
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P F G + +C +G G++ +++ + G + ++ + ++ G ++EA +
Sbjct: 415 PCDYAFSGAIKSCAVLGAYCNGQQ-YHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQ 473
Query: 139 FIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEE 170
R MP + V W AL+ H + +D+ EE
Sbjct: 474 VFRTMPCL-DSVSWNALIAALGQHGHGAEAVDVYEE 508
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 39/194 (20%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGC----LEGARRVFIEMEERTVFTWS------ 50
+ H + +SG V N L+ +Y KC L AR+VF E+ E+ +W+
Sbjct: 170 QFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGY 229
Query: 51 --------------------------AMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTF 84
AMI G G +EAL +M+ GI+ + T+
Sbjct: 230 VKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTY 289
Query: 85 IGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP 144
++ AC G + G++ + ++ +V L + G EA MP
Sbjct: 290 PSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDN--SLVSLYYKCGKFDEARAIFEKMP 347
Query: 145 IKPNGVVWGALLGG 158
K + V W ALL G
Sbjct: 348 AK-DLVSWNALLSG 360
>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 623
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 162/346 (46%), Positives = 227/346 (65%), Gaps = 6/346 (1%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
SGF N + N LI+MY +CG L A+ VF M ERT+ +W+A+I G +HG + A+
Sbjct: 282 SGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQL 341
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
F +MI GI+P+G F+ +L AC H G D+G +F M Y + P EHY CMVDLL
Sbjct: 342 FKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLG 401
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVV 188
RAG L+EA I +MPIKP+G VWGALLG C++HKN++LAE A ++ +L+P N GY+V+
Sbjct: 402 RAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVL 461
Query: 189 LSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQM 248
LSNIY+ A + V R+R +M+ +KK PG S + + G VH F+ GD H Q+++I+++
Sbjct: 462 LSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRV 521
Query: 249 WEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKF--LYRHSEKLALTFGLMNTPPGTPIRIM 306
E+L + + P + EE K+ F + HSEKLA+ FGL+NT G + I+
Sbjct: 522 LEELEAIIMQEFGKPEKD----NREESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVII 577
Query: 307 KNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
KNLR+CEDCH FK++S+IV+R++ VRD RFH F+ GSCSC DYW
Sbjct: 578 KNLRICEDCHLFFKMVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 623
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 109/227 (48%), Gaps = 4/227 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + GF ++ V N I MY+KCG + A+++F EM + + +W+AM+ G A +G
Sbjct: 174 LHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGL 233
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A L + M G+ P+ VT +G+L +C ++G G + + G
Sbjct: 234 ATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQAS-GFTSNPFLNN 292
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL--DQLD 179
++++ +R G L +A MP + V W A++GG +H + ++A + +++ ++
Sbjct: 293 ALINMYARCGNLTKAQAVFDGMPER-TLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIE 351
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD 226
P + VLS + + + + RN ++ P S VD
Sbjct: 352 PDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVD 398
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 4/140 (2%)
Query: 21 LIDMYVKCGCLEGARRVFIE--MEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
LI MY K ++ AR+VF E + ++A++ G + + EA+ F +M E G+
Sbjct: 90 LISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVP 149
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
N VT +GL+ AC ++ G S T +YG + C + + + G + A +
Sbjct: 150 VNSVTLLGLIPACVSPINLELGSSLHCS-TLKYGFDSDVSVVNCFITMYMKCGSVNYAQK 208
Query: 139 FIRNMPIKPNGVVWGALLGG 158
MP+K + W A++ G
Sbjct: 209 LFDEMPVK-GLISWNAMVSG 227
>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Glycine max]
Length = 629
Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 156/351 (44%), Positives = 237/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + G N V LI+MY +CG ++ A+ +F + + V T+++MI GLA+HG+
Sbjct: 279 IHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGK 338
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ EA+ F++M++ ++PNG+TF+G+L+AC H G VD G F SM +GI P++EHYG
Sbjct: 339 SIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYG 398
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+L R G L+EA++FI M ++ + + +LL C++HKNI + E+ ++ L + +
Sbjct: 399 CMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLLSEHYRI 458
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G ++LSN YA RW A VR+ M G+ K PG SSI V+ +HEF +GD HP+
Sbjct: 459 DSGSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNNAIHEFFSGDLRHPE 518
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I++ E+L K +GY+P T V L DI++++KE L HSE+LA+ +GL++T T
Sbjct: 519 RKRIYKKLEELNYLTKFEGYLPATEVALHDIDDEQKELALAVHSERLAICYGLVSTEAYT 578
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+R+ KNLR+C+DCHA KLI++I R+IVVRDRNRFH F+ G CSC DYW
Sbjct: 579 TLRVGKNLRICDDCHAMIKLIAKITRRKIVVRDRNRFHHFENGECSCKDYW 629
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 3/166 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ C +I CG +E A VF EM R W+ +I GL +G+ L F +M
Sbjct: 189 RDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREM 248
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
G++PN VTF+ +L AC +G ++ G R+ ++ + G+ G ++++ SR G
Sbjct: 249 QVKGVEPNEVTFVCVLSACAQLGALELG-RWIHAYMRKCGVEVNRFVAGALINMYSRCGD 307
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH-KNIDLAEEASRQLDQ 177
+ EA + +K + + +++GG +H K+I+ E S L +
Sbjct: 308 IDEAQALFDGVRVK-DVSTYNSMIGGLALHGKSIEAVELFSEMLKE 352
>gi|302791701|ref|XP_002977617.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
gi|300154987|gb|EFJ21621.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
Length = 805
Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 150/340 (44%), Positives = 218/340 (64%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ + N ++ MY +CG L AR F M R +W+AM+ A HG+ ++ F M
Sbjct: 466 RDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEISWNAMLSASAQHGRVEDCCDLFRAM 525
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
++ G + F+ LL AC H G V G F +MT ++G++P EHYGCMVDLL R G
Sbjct: 526 LQEGFDAERIAFLNLLSACAHAGLVKAGCEHFSAMTGDHGVVPATEHYGCMVDLLGRKGR 585
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNI 192
L +A+ ++ MP+ P+ W AL+G CR++ + + A+ ++ +L + +V L NI
Sbjct: 586 LADAHGIVQAMPVPPDAATWMALMGACRIYGDTERGRFAAERVLELRADHTAAYVALCNI 645
Query: 193 YAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKL 252
Y+ A RW+D A VRK+M +LG++K PG SSI + VHEFV D +HPQ+E I+ E++
Sbjct: 646 YSAAGRWDDAAAVRKIMADLGLRKIPGVSSIEIRSKVHEFVVRDRSHPQSEAIYAELERV 705
Query: 253 LDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVC 312
+ ++ GY T VL D+EE++KE+ L HSEKLA+ FG+M+TP G+ +R++KNLRVC
Sbjct: 706 MGAIERAGYRAVTGEVLHDVEEEQKEQLLRFHSEKLAIAFGMMSTPQGSTLRVIKNLRVC 765
Query: 313 EDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
DCH A K IS++ REIVVRD RFH F+ G+CSCGDYW
Sbjct: 766 VDCHNASKFISKVFGREIVVRDVRRFHHFKDGACSCGDYW 805
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER-TVFTWSAMIQGLAIHG 60
+H + ++G V + L+ MY +CG L A +F +E V W+AMI + +G
Sbjct: 150 IHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANALFGHLERHLDVVLWNAMITANSQNG 209
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR-RFFYSMTTEYGIIPQIEH 119
+EAL F +M+++GI P+ VTF+ + AC + + + F++ E G+ +
Sbjct: 210 SPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHACLDETGLGSDVVV 269
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V+ +R G + A +F MP + N V W +++
Sbjct: 270 ATALVNAYARCGEIDCARKFFAEMP-ERNAVSWTSMIAA 307
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 74/144 (51%), Gaps = 1/144 (0%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R+ + ++L+ MY++CG LE A VF ++ +++ W+ +I G + A+ F+++
Sbjct: 60 RDGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRI 119
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
++ GI + + F+ +L AC ++ G R + E G+ Q +V + R G
Sbjct: 120 LQEGIALDAIVFVSVLSACSSEEFLAAG-RLIHRCAVEAGLGLQEIVASALVSMYGRCGS 178
Query: 133 LQEAYEFIRNMPIKPNGVVWGALL 156
L++A ++ + V+W A++
Sbjct: 179 LRDANALFGHLERHLDVVLWNAMI 202
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 76/170 (44%), Gaps = 9/170 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMI--QGLAIH 59
V + + G ++ + L+ Y +C E A RVF EE W A + +A++
Sbjct: 351 VEAIAQEIGVVTDVAIVTDLVMAYARCDGQEDAIRVFSAREEGE---WDAALVTAMIAVY 407
Query: 60 GQAKEALTSFN---KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ 116
Q ++ ++F IE GI P+ + +I L AC + + EGR+ + + +
Sbjct: 408 AQCRDRRSTFKLWGAAIERGISPDRILYITALDACASLAALSEGRQIHACVAADRRLDRD 467
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNID 166
+ +V + + G L++A + MP + + + W A+L H ++
Sbjct: 468 VTLGNAIVSMYGQCGSLRDARDAFDGMPAR-DEISWNAMLSASAQHGRVE 516
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H +++G ++ V L++ Y +CG ++ AR+ F EM ER +W++MI G
Sbjct: 255 HACLDETGLGSDVVVATALVNAYARCGEIDCARKFFAEMPERNAVSWTSMIAAFTQIGHL 314
Query: 63 KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
A+ +F+ M+ G+ P T L C + R ++ E G++ +
Sbjct: 315 L-AVETFHAMLLEGVVPTRSTLFAALEGCEDLRVA----RLVEAIAQEIGVVTDV 364
>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Glycine max]
Length = 611
Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 162/344 (47%), Positives = 230/344 (66%), Gaps = 5/344 (1%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ V L+DMY K G LE A++VF M R + W++MI GLA+HG+AK AL + +M+
Sbjct: 268 DVLVNTCLVDMYCKSGELEIAKQVFESMAFRDLNAWNSMILGLAMHGEAKAALNYYVRMV 327
Query: 74 EI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
++ I PN +TF+G+L AC H G VDEG F MT EY + P++EHYGC+VDL +RAG
Sbjct: 328 KVEKIVPNSITFVGVLSACNHRGMVDEGIVHFDMMTKEYNVEPRLEHYGCLVDLFARAGR 387
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGC-RVHKNIDLAEEASRQL--DQLDPLNNGYHVVL 189
+ EA + M IKP+ V+W +LL C + + +++L+EE ++Q+ + ++G +V+L
Sbjct: 388 INEALNLVSEMSIKPDAVIWRSLLDACCKQYASVELSEEMAKQVFESEGSVCSSGVYVLL 447
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
S +YA A RW DV +RKLM GV K PG S I +DGVVHEF AGD THP++E I+++
Sbjct: 448 SKVYASACRWNDVGLLRKLMSEKGVTKEPGCSIIEIDGVVHEFFAGDTTHPKSENIYKVV 507
Query: 250 EKLLDGMKLKGYIPNTS-VVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKN 308
++ + ++ GY+P+ S ++D K L HSE+LA+ FG++N+ P PIR+ KN
Sbjct: 508 TEIEEKLESIGYLPDYSGAPMVDEVNDGKLNTLRLHSERLAIAFGILNSKPDVPIRVFKN 567
Query: 309 LRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
LRVC DCH KLIS I N EI+VRDR RFH F+ G+CSC DYW
Sbjct: 568 LRVCNDCHRVTKLISRIYNVEIIVRDRARFHHFKDGTCSCMDYW 611
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 4/164 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + GF + +CN+L+ Y CGCL+ A ++F +M ER +W+ MI A G
Sbjct: 152 QVHAHVLKHGFESDTYICNSLVHFYATCGCLDLAEKMFYKMSERNEVSWNIMIDSYAKGG 211
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR--RFFYSMTTEYGIIPQIE 118
AL F +M + P+G T ++ AC +G + G + + ++ +
Sbjct: 212 IFDTALRMFGEMQRVH-DPDGYTMQSVISACAGLGALSLGLWVHAYILKKCDKNMVDDVL 270
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
C+VD+ ++G L+ A + +M + W +++ G +H
Sbjct: 271 VNTCLVDMYCKSGELEIAKQVFESMAFRDLN-AWNSMILGLAMH 313
>gi|125595828|gb|EAZ35608.1| hypothetical protein OsJ_19898 [Oryza sativa Japonica Group]
Length = 602
Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 158/344 (45%), Positives = 224/344 (65%), Gaps = 1/344 (0%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GFR N+ +CN LI+ + +CG L A+ +F EM ER+V +W+ +I G +HGQ A+ F
Sbjct: 259 GFRDNLPLCNALINFHARCGSLAQAQELFDEMPERSVVSWTTLIIGYGMHGQGDIAVDLF 318
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
M+ P+ V +GLL AC H G DEGR++F +M +Y + P++EHY CMVDLL R
Sbjct: 319 ETMVSEATAPDSVAMVGLLSACSHAGMYDEGRKYFSTMERDYCLRPKLEHYTCMVDLLGR 378
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
AG L EA E I +MP+ +G VWGALLG C++HKN+++ EEA ++ L+P N GY+V++
Sbjct: 379 AGRLDEARELIASMPMAADGAVWGALLGACKIHKNVEMGEEAFERVVSLEPANVGYYVLM 438
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
+NIYA+A + + VA+VR MR G++K PG S + G VH F+A D +HPQA +I+++
Sbjct: 439 ANIYADAGQLDGVAKVRAAMRRRGLRKEPGCSYVEHKGKVHLFMADDHSHPQARRIYELV 498
Query: 250 EKLLDGMKLK-GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKN 308
+L +K K G + E + HSEKLA+ FGL+NT G+ I ++KN
Sbjct: 499 VELERMVKEKTGGDVVEERAEKAVAEAAAVPLVGFHSEKLAVAFGLLNTEAGSEIVVIKN 558
Query: 309 LRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
LRVC DCH+ K ISE+ NR +VRD +RFH F+ G+CSC DYW
Sbjct: 559 LRVCGDCHSFLKTISELTNRAFLVRDASRFHRFENGACSCRDYW 602
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 7/140 (5%)
Query: 35 RRVFIEME--ERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEI---GIKPNGVTFIGLLH 89
R+VF EM R + +W+A+I A +G A EA+ + +M G++P+ VT +G+L
Sbjct: 176 RQVFEEMPRASRDLVSWNAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLS 235
Query: 90 ACGHMGWVDEGRRF-FYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPN 148
+C H G G Y T G + +++ +R G L +A E MP + +
Sbjct: 236 SCAHTGARRVGLDVERYVRDTIPGFRDNLPLCNALINFHARCGSLAQAQELFDEMPER-S 294
Query: 149 GVVWGALLGGCRVHKNIDLA 168
V W L+ G +H D+A
Sbjct: 295 VVSWTTLIIGYGMHGQGDIA 314
>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 162/352 (46%), Positives = 216/352 (61%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H G + V N +I MY +CG +E AR +F+ M +W++MI L HG
Sbjct: 446 QLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHG 505
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+ + +M++ GI P+ TF+ +L AC H G V+EG R+F SM YGI P +HY
Sbjct: 506 HGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHY 565
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
M+DL RAG +A I +MP + +W ALL GCR H N+DL EA+ +L +L P
Sbjct: 566 ARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIP 625
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++G +V+LSN+YA RW DVAR RKLMR+ GVKK P S V+ VH F+ D HP
Sbjct: 626 QHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENKVHVFLVDDTVHP 685
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ I+ EKL MK GYIP+T VL D+E + KE L HSEKLA+ FGLM P G
Sbjct: 686 EVLSIYNYLEKLNLEMKKIGYIPDTKYVLHDMESEHKEYALSTHSEKLAVAFGLMKLPQG 745
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+R+ KNLR+C DCH A K +S++V REIVVRD RFH F+ G CSC +YW
Sbjct: 746 ATVRVFKNLRICGDCHNAIKFMSKVVGREIVVRDGKRFHHFKNGECSCRNYW 797
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 117/273 (42%), Gaps = 18/273 (6%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
++I NTL+ YV G +E A+ F +M E+ + TW+ MI GLA +G ++AL FN+M
Sbjct: 357 KDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQM 416
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
G +PN F G + AC +G ++ GR+ ++ G + M+ + +R G
Sbjct: 417 KLDGYEPNDYAFAGAITACSVLGALENGRQ-LHAQIVHLGHDSTLSVGNAMITMYARCGI 475
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASRQLDQLDPLNNGYHVV 188
++ A MP + V W +++ H K I+L E+ ++ + P + V
Sbjct: 476 VEAARTMFLTMPF-VDPVSWNSMIAALGQHGHGVKAIELYEQMLKE--GILPDRRTFLTV 532
Query: 189 LSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQ- 247
LS E ++ N G+ + +D D + F+
Sbjct: 533 LSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEA 592
Query: 248 ---MWEKLLDGMKLKGYIPNTSVVLLDIEEKEK 277
+WE LL G + G + L IE EK
Sbjct: 593 RAPIWEALLAGCRTHGNMD------LGIEAAEK 619
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 9/175 (5%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
+RN + TLI YV+ G L GAR + M E+ W+AMI G HG ++ALT F K
Sbjct: 220 KRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRK 279
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY----GCMVDLL 127
M +G++ + T+ ++ AC G+ G++ ++ + + P + ++ L
Sbjct: 280 MRLLGVQVDESTYTSVISACADGGFFLLGKQ-VHAYILKNELNPDRDFLLSVGNTLITLY 338
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182
+ G + A + MP+K + + W LL G + N EEA Q+ N
Sbjct: 339 WKYGKVDGARKIFYEMPVK-DIITWNTLLSG---YVNAGRMEEAKSFFAQMPEKN 389
>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 614
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 162/346 (46%), Positives = 227/346 (65%), Gaps = 6/346 (1%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
SGF N + N LI+MY +CG L A+ VF M ERT+ +W+A+I G +HG + A+
Sbjct: 273 SGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQL 332
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
F +MI GI+P+G F+ +L AC H G D+G +F M Y + P EHY CMVDLL
Sbjct: 333 FKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLG 392
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVV 188
RAG L+EA I +MPIKP+G VWGALLG C++HKN++LAE A ++ +L+P N GY+V+
Sbjct: 393 RAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVL 452
Query: 189 LSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQM 248
LSNIY+ A + V R+R +M+ +KK PG S + + G VH F+ GD H Q+++I+++
Sbjct: 453 LSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRV 512
Query: 249 WEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKF--LYRHSEKLALTFGLMNTPPGTPIRIM 306
E+L + + P + EE K+ F + HSEKLA+ FGL+NT G + I+
Sbjct: 513 LEELEAIIMQEFGKPEKD----NREESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVII 568
Query: 307 KNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
KNLR+CEDCH FK++S+IV+R++ VRD RFH F+ GSCSC DYW
Sbjct: 569 KNLRICEDCHLFFKMVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 614
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 109/227 (48%), Gaps = 4/227 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + GF ++ V N I MY+KCG + A+++F EM + + +W+AM+ G A +G
Sbjct: 165 LHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGL 224
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A L + M G+ P+ VT +G+L +C ++G G + M G
Sbjct: 225 ATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQAS-GFTSNPFLNN 283
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL--DQLD 179
++++ +R G L +A MP + V W A++GG +H + ++A + +++ ++
Sbjct: 284 ALINMYARCGNLTKAQAVFDGMPER-TLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIE 342
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD 226
P + VLS + + + + RN ++ P S VD
Sbjct: 343 PDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVD 389
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 4/140 (2%)
Query: 21 LIDMYVKCGCLEGARRVFIE--MEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
LI MY K ++ AR+VF E + ++A++ G + + +A+ F +M E G+
Sbjct: 81 LISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVP 140
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
N VT +GL+ AC ++ G S T +YG + C + + + G + A +
Sbjct: 141 VNSVTLLGLIPACVSPINLELGSSLHCS-TLKYGFDSDVSVVNCFITMYMKCGSVNYAQK 199
Query: 139 FIRNMPIKPNGVVWGALLGG 158
MP+K + W A++ G
Sbjct: 200 LFDEMPVK-GLISWNAMVSG 218
>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 155/352 (44%), Positives = 226/352 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++G ++ V + L+DMY KCGC+E A VF + R +W+ +I G + HG
Sbjct: 413 QLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHG 472
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q +AL +F M++ G P+ VTFIG+L AC HMG ++EG++ F S++ YGI P IEHY
Sbjct: 473 QGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHY 532
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVD+L RAG E FI M + N ++W +LG C++H NI+ E A+ +L +L+P
Sbjct: 533 ACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEP 592
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +++LSN++A W+DV VR LM GVKK PG S + V+G VH F++ D +HP
Sbjct: 593 EIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHP 652
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I + L + GY PNT VL ++ ++EK++ L+ HSE+LAL F L++T
Sbjct: 653 KIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTR 712
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI KNLR+C DCH K ISEI N+E+VVRD N FH F+ GSCSC ++W
Sbjct: 713 KTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 764
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 5/158 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +SG + + N+L+++Y KCG A +VF E+ ER V +W+A+I G G
Sbjct: 213 IHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGY 272
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
L FN+M+ G PN TFI +L +C + VD G++ + + + G
Sbjct: 273 GS-GLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNS--LDGNDFVG 329
Query: 122 -CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ ++ FL++A E I N IK + W ++ G
Sbjct: 330 TALVDMYAKNRFLEDA-ETIFNRLIKRDLFAWTVIVAG 366
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH ++ N V L+DMY K LE A +F + +R +F W+ ++ G A G
Sbjct: 312 QVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDG 371
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q ++A+ F +M G+KPN T L C + +D GR+ +SM + G +
Sbjct: 372 QGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQ-LHSMAIKAGQSGDMFVA 430
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ ++ G +++A E + + + + V W ++ G H
Sbjct: 431 SALVDMYAKCGCVEDA-EVVFDGLVSRDTVSWNTIICGYSQH 471
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + GF +I + N + MY+K +E + F M + + + ++ G
Sbjct: 112 IHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTET 171
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ +++ G +PN TFI +L C G ++EG+ + + GI P +
Sbjct: 172 CDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKA-IHGQVIKSGINPDSHLWN 230
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V++ ++ G A + +P + + V W AL+ G
Sbjct: 231 SLVNVYAKCGSANYACKVFGEIP-ERDVVSWTALITG 266
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 5/160 (3%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
++L+++YVKC L+ AR+V EM + V W+ + +EA+ F M I+
Sbjct: 28 SSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTRIR 87
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
N F L+ A +G G ++ +YG I V + + ++ ++
Sbjct: 88 LNQFIFASLISAAASLGDNHYGES-IHACVCKYGFESDILISNAFVTMYMKTQSVENGWQ 146
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
F + M I+ L G C + + ++ R L QL
Sbjct: 147 FFKAMMIENLASRNNLLSGFC----DTETCDQGPRILIQL 182
>gi|356532565|ref|XP_003534842.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g50990-like [Glycine max]
Length = 569
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 158/351 (45%), Positives = 231/351 (65%), Gaps = 3/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + N + LIDMY KCG ++ +R+VF E+ V W+AMI GLAIHG
Sbjct: 222 VHGLMVEKRVELNYILSAALIDMYAKCGRIDVSRQVFEEVARDHVSVWNAMISGLAIHGL 281
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A +A F++M + P+ +TFIG+L AC H G V+EGR++F M + I PQ+EHYG
Sbjct: 282 AMDATLVFSRMEMEHVLPDSITFIGILTACSHCGLVEEGRKYFGMMQNRFMIQPQLEHYG 341
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
MVDLL RAG ++EAY I+ M ++P+ V+W ALL CR+H+ +L E A + +L+
Sbjct: 342 TMVDLLGRAGLMEEAYAVIKEMRMEPDIVIWRALLSACRIHRKKELGEVAIANISRLE-- 399
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+G V+LSN+Y W+ RVR++M+ GV+K+ G S + + +H+F A ++HP+
Sbjct: 400 -SGDFVLLSNMYCSLNNWDGAERVRRMMKTRGVRKSRGKSWVELGDGIHQFNAAYQSHPE 458
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ I+++ E L+ KL+G+ P T +VL+D+ E+EKE+ L HSEKLA+ + ++ T PGT
Sbjct: 459 MKSIYRVLEGLIQRAKLEGFTPLTDLVLMDVSEEEKEENLMFHSEKLAMAYAVLKTSPGT 518
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI KNLR+C DCH K++S+I+NR+I+VRDR RFH F+ G CSC DYW
Sbjct: 519 KIRISKNLRICLDCHNWIKIVSKILNRKIIVRDRIRFHQFEGGVCSCKDYW 569
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 75/144 (52%), Gaps = 2/144 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N +I+ VK G + A++VF +M R V TW++MI G + + +AL+ F +M+ ++
Sbjct: 138 NLVIESLVKGGQCDIAKKVFGKMSVRDVVTWNSMIGGYVRNLRFFDALSIFRRMLSAKVE 197
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+G TF ++ AC +G + ++ + + E + ++D+ ++ G + + +
Sbjct: 198 PDGFTFASVVTACARLGALGNA-KWVHGLMVEKRVELNYILSAALIDMYAKCGRIDVSRQ 256
Query: 139 FIRNMPIKPNGVVWGALLGGCRVH 162
+ + + VW A++ G +H
Sbjct: 257 VFEEVA-RDHVSVWNAMISGLAIH 279
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 156/351 (44%), Positives = 231/351 (65%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G+ ++ V L+DMY KCG L A+ +F + ++ + +W+ MI G +HG
Sbjct: 519 IHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGF 578
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+++FN+M GI+P+ +F +L+AC H G ++EG +FF SM E G+ P++EHY
Sbjct: 579 GNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYA 638
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL+R G L +AY+FI +MPIKP+ +WG LL GCR+H ++ LAE+ + + +L+P
Sbjct: 639 CVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPD 698
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N Y+VVL+N+YAEAE+WE+V ++RK M+ G K+ PG S I V G + FVAG+ HPQ
Sbjct: 699 NTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQ 758
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A+KI + KL M+ + Y VL++ ++ EKE HSEK A+ FG++N PPG
Sbjct: 759 AKKIDVLLSKLTMQMQNEDYSSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGR 818
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+R+ KN RVC DCH K +S+ EIV+RD NRFH F+ G CSC D +
Sbjct: 819 TVRVSKNRRVCGDCHEMGKFMSKTTKMEIVLRDSNRFHHFKDGLCSCRDAF 869
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + ++ F + NTL+DMY KCG L GA VF++M + T+ +W+++I G
Sbjct: 318 LHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGL 377
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+A+ F++M G++P+ T ++HAC +D+GR +S + G+ +
Sbjct: 378 YSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRD-VHSYVIKNGMGSNLPVTN 436
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++++ ++ G ++EA +P+K + V W ++GG
Sbjct: 437 ALINMYAKCGSVEEARLVFSKIPVK-DIVSWNTMIGG 472
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y ++G N+ V N LI+MY KCG +E AR VF ++ + + +W+ MI G + +
Sbjct: 419 VHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLL 478
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL F M + KP+ +T +L AC + +D+GR + G +
Sbjct: 479 PNEALELFLDM-QKQFKPDDITMACVLPACAGLAALDKGRE-IHGHILRRGYFSDLHVAC 536
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ ++ G L A + + +M K + + W ++ G +H
Sbjct: 537 ALVDMYAKCGLLVLA-QLLFDMIPKKDLISWTVMIAGYGMH 576
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 1/143 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH Y + GF N V N+LI Y K G +E A +F E+ E V +W++MI G ++G
Sbjct: 216 RVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNG 275
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ L F +M+ +G++ + T + +L AC ++G + GR + + ++
Sbjct: 276 FSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRA-LHGFGVKACFSEEVVFS 334
Query: 121 GCMVDLLSRAGFLQEAYEFIRNM 143
++D+ S+ G L A E M
Sbjct: 335 NTLLDMYSKCGNLNGATEVFVKM 357
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH +G + + L+ MYV CG L R++F ++ VF W+ ++ A G
Sbjct: 115 RVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIG 174
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+E+++ F KM ++G+ N TF +L +G V E +R + + G
Sbjct: 175 NFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKR-VHGYVLKLGFGSNTAVV 233
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++ + G ++ A+ + +P+ V W +++ GC V+
Sbjct: 234 NSLIAAYFKFGGVESAHNLFDELS-EPDVVSWNSMINGCVVN 274
>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
Length = 600
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 154/351 (43%), Positives = 230/351 (65%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+ SG ++ + ++ Y KCG L+ AR +F + ++ TWSA++ A +G
Sbjct: 250 VHDDITASGIPMDVALGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGY 309
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ +++M++ G++ NG+TF+GLL AC H G +G +F SM ++G++P EHY
Sbjct: 310 ETEAIELYHEMVQGGLEVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYL 369
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
++DLL R+G LQ + + I +MP +P+ W ALLG CR+H ++D + + +LDP
Sbjct: 370 NLIDLLGRSGQLQLSEDLINSMPYEPDSSAWLALLGACRMHGDVDRGARIAELIYELDPE 429
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +++LSN+Y+ R ++ R RK MR G+ K PG SSI V VHEF+A + HPQ
Sbjct: 430 DSGPYILLSNLYSSTGRMDEARRTRKAMRLRGITKQPGLSSIEVKDRVHEFMAAQKLHPQ 489
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I E+L +K GY+ + VL D+EE+EKE+ L+ HSE+LA+ FGL++TPPGT
Sbjct: 490 LGRIHAEIERLKARVKEAGYVADVRAVLRDVEEEEKEQLLWYHSERLAIAFGLISTPPGT 549
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ I+KNLRVC DCHAA K IS++V R+IVVRD RFH F+ G+CSCGDYW
Sbjct: 550 ALHIVKNLRVCFDCHAAVKAISKVVGRKIVVRDAIRFHHFENGACSCGDYW 600
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 49/264 (18%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERT--VFTWSAMIQGLAI 58
RVH + G+ + + N LI+MY KCG + AR VF +++E+ V +W+ +I
Sbjct: 45 RVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQIQEKNADVISWNGIIGAYTQ 104
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-------------- 104
+G KEAL F M G+ N VT I + AC + +EGR
Sbjct: 105 NGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSEEEGRIVHAIAVDKRLESDTMV 164
Query: 105 -YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ------------------EAYEFIRNMPI 145
S+ +G ++ + D L R + + + F+ +
Sbjct: 165 GTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQNWQCKKAIQVFRFMDLEGV 224
Query: 146 KPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD------PLNNGYHVVLSNIYAEAERW 199
+P+ V + ++ C LA ++ D P++ + + Y + R
Sbjct: 225 QPDAVTFLTIIDACAA-----LAAHTEGRMVHDDITASGIPMDVALGTAVMHFYGKCGRL 279
Query: 200 EDVARVRKLMRNLGVKKTPGWSSI 223
++ R + +LG K T WS+I
Sbjct: 280 DN---ARAIFDSLGKKNTVTWSAI 300
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + V +L++M+ KC ++ AR VF + + + TW+ M+ + + Q
Sbjct: 149 VHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQNWQ 208
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K+A+ F M G++P+ VTF+ ++ AC + EG R + T GI +
Sbjct: 209 CKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEG-RMVHDDITASGIPMDVALGT 267
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + G L A ++ K N V W A+L
Sbjct: 268 AVMHFYGKCGRLDNARAIFDSLG-KKNTVTWSAILAA 303
>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 1067
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 160/353 (45%), Positives = 230/353 (65%), Gaps = 3/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH S ++ +I + + L+DMY KCG ++ A R F M R +++W++MI G A HG
Sbjct: 716 VHGCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGH 775
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++L F +M G P+ VTF+G+L AC H G V+EG F SM+ YG+ P++EH+
Sbjct: 776 GTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFS 835
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG-CRVH-KNIDLAEEASRQLDQLD 179
CMVDLL R G L + +F+ MP+KPN ++W +LG CR + +N L A+ L +++
Sbjct: 836 CMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEME 895
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N +++LSN+YA +W+DVA+ R MR VKK G S +T+ VH FVAGD++H
Sbjct: 896 PTNAVNYILLSNMYASGGKWDDVAKTRVAMRKAFVKKEAGCSWVTMKDGVHVFVAGDKSH 955
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ + I++ ++L M+L GYIP T L D+E + KE+ L HSEK+A+ F ++ P
Sbjct: 956 PEKDLIYEKLKELNGKMRLAGYIPETRFALYDLEGESKEELLSYHSEKIAVAF-VLTRPS 1014
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVC DCH+AFK IS+IV R+IV+RD NRFH F+ G CSCGD+W
Sbjct: 1015 KMPIRILKNLRVCGDCHSAFKYISQIVERQIVLRDSNRFHHFENGKCSCGDFW 1067
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 3/158 (1%)
Query: 2 VHEYSNQSGF-RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
VH + +SG I + N LI+MY KCG + A VF M+ + TW++MI GL +
Sbjct: 410 VHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNK 469
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q EA+ +F +M + P+ T I L +C +GW+ G + + + G+ +
Sbjct: 470 QFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQ-LHCEGLKLGLDLDVSVS 528
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ L G+++E + M + + V W +L+G
Sbjct: 529 NALLALYGECGYVKECQKAFSLM-LDYDHVSWNSLIGA 565
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
++GF ++ +CNTLI++Y + G L R+VF EM R + +WS +I G + EA
Sbjct: 101 KNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACE 160
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMG 95
F KM+ G PN F ++ AC G
Sbjct: 161 LFRKMVSDGFMPNHYAFGSVIRACQECG 188
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 69/150 (46%), Gaps = 2/150 (1%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAK-EALTS 68
G ++ V N L+ +Y +CG ++ ++ F M + +W+++I LA + EA+ S
Sbjct: 520 GLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVES 579
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
F M+ G PN VTFI +L A + + G++ +++ + + ++
Sbjct: 580 FLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQ-IHALVLKRNVAADTAIENALLACYG 638
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ G + M + + V W +++ G
Sbjct: 639 KCGDMGYCENIFSRMSDRQDEVSWNSMISG 668
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 81/161 (50%), Gaps = 8/161 (4%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
+SGF ++ V + L+ + K G + A+ +F +M R V + + +I GL + +EA+
Sbjct: 312 KSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVE 371
Query: 68 SFNKMIE-IGIKPNGVTFIGLLHACGHMGWVDEGRRF---FYSMTTEYGII-PQIEHYGC 122
F +M + + + PN +++ +L A ++ G+R ++ G++ QI
Sbjct: 372 LFMEMKDSVELNPN--SYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNG 429
Query: 123 MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHK 163
++++ ++ G + +A R M K + V W +++ G +K
Sbjct: 430 LINMYAKCGAINDACVVFRLMDNK-DSVTWNSMITGLDQNK 469
>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
Length = 1091
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 152/350 (43%), Positives = 227/350 (64%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ + GF + N L+DMYVKCG L AR +F + ++ + +W+ MI G +HG
Sbjct: 741 IHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGF 800
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K A+ F +M GI+P+ +F +L+AC H G EGRRFF +M EY I P+++HY
Sbjct: 801 GKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYT 860
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLLSR G L+EA EFI +MPI+P+ +W +LL GCR+HKN+ LAE+ + ++ +L+P
Sbjct: 861 CIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPE 920
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+V+L+NIYAEAERWE V +++ + G+++ G+S I V VH F+A + HP
Sbjct: 921 NTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGYSWIEVRSKVHVFIADNRNHPD 980
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I + + + M+ +G+ P L+ ++ ++ L HS KLA+ FG++N P G
Sbjct: 981 WNRIAEFLDDVARRMRQEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGVLNLPEGR 1040
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDY 351
PIR+ KN +VC CH A K IS++ NREI++RD +RFH F+ G CSC Y
Sbjct: 1041 PIRVTKNSKVCSHCHEAAKFISKMCNREIILRDSSRFHRFEGGRCSCRGY 1090
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 79/161 (49%), Gaps = 3/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y+ ++G + + V N L++MYVKC +E AR +F + + V +W+ +I G + +
Sbjct: 641 VHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNF 700
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
E+ + F+ M+ + +PN VT +L A + ++ GR ++ G +
Sbjct: 701 PNESFSLFSDML-LQFRPNAVTMTCILPAAASISSLERGRE-IHAYALRRGFLEDSYASN 758
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ + G L A + K N + W ++ G +H
Sbjct: 759 ALVDMYVKCGALLVARVLFDRL-TKKNLISWTIMIAGYGMH 798
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 2/155 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H Y + GF VCN LI Y K + A VF M + +W+++I G + +G
Sbjct: 439 AHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGL 498
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ F +M G + + VT + +L AC + G R + + + G+I +
Sbjct: 499 NSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAG-RVVHGYSVKTGLIGETSLAN 557
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
++D+ S Q + R+M K N V W A++
Sbjct: 558 ALLDMYSNCSDWQSTNQIFRSMGQK-NVVSWTAMI 591
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 11/167 (6%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G + V N LI +Y +CG +E A RVF M R +W++MI G +G
Sbjct: 226 IHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGW 285
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+ F+KM G + + VT + +L AC +G+ G+ + + + G++ ++
Sbjct: 286 HGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKA-VHGYSVKSGLLWGLDSVQ 344
Query: 122 CMVD----------LLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+D + + G + A M K N VW ++GG
Sbjct: 345 SGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGG 391
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 84/362 (23%), Positives = 139/362 (38%), Gaps = 82/362 (22%)
Query: 2 VHEYSNQSGFRRNIRVCNTLID----------MYVKCGCLEGARRVFIEMEER-TVFTWS 50
VH YS +SG + + ID MYVKCG + ARRVF M + V W+
Sbjct: 327 VHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWN 386
Query: 51 AMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH-----ACGHMGWVDEGRRFFY 105
++ G A G+ +E+L+ F +M E+GI P+ LL +C G V G
Sbjct: 387 LIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHG----- 441
Query: 106 SMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH--- 162
+ G Q ++ +++ + +A MP + + + W +++ GC +
Sbjct: 442 -YIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMP-RQDTISWNSVISGCSSNGLN 499
Query: 163 -KNIDLAEEASRQLDQLDPLN--------------------NGYHV------------VL 189
+ I+L Q +LD + +GY V L
Sbjct: 500 SEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANAL 559
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSI-----------TVDGVVHEFVAGDET 238
++Y+ W+ ++ R++G K W+++ V G++ E V D
Sbjct: 560 LDMYSNCSDWQS---TNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVL-DGI 615
Query: 239 HP------QAEKIFQMWEKLLDGMKLKGY-IPNTSVVLLDIEEKEKEKFLY-RHSEKLAL 290
P A F E L G + GY I N LL + E ++ R+ E+ L
Sbjct: 616 RPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARL 675
Query: 291 TF 292
F
Sbjct: 676 IF 677
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERT--VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
L+ Y+KCG L AR VF M + V W++++ A G +EA++ F +M G+
Sbjct: 142 LVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVS 201
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ +L +G + EG + + + G+ ++ + SR G +++A
Sbjct: 202 PDAHAVSCVLKCVSSLGSLTEG-EVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAAR 260
Query: 139 FIRNMPIKPNGVVWGALLGGC 159
+M + + + W +++GGC
Sbjct: 261 VFDSMHPR-DAISWNSMIGGC 280
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH YS ++G + N L+DMY C + ++F M ++ V +W+AMI G
Sbjct: 540 VHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGL 599
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ +M+ GI+P+ LHA + +G+ + T G+ +
Sbjct: 600 FDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKS-VHGYTIRNGMEKLLPVAN 658
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++++ + ++EA I + + + W L+GG
Sbjct: 659 ALMEMYVKCRNVEEA-RLIFDRVTNKDVISWNTLIGG 694
>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
Length = 734
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 159/352 (45%), Positives = 221/352 (62%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + G R + + + ++DMY K G LE A R+F + + V W+ M+ A HG
Sbjct: 383 QVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYASHG 442
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q + AL F++M I PN +T + +L AC H G V +G +F M EYGI+P EHY
Sbjct: 443 QGRMALEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQEEYGIVPNTEHY 502
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDL RAG L +A FI I VVW LL CR+HK+I+ A+ AS +L QL+
Sbjct: 503 NCMVDLYGRAGLLDKAKNFIEENKISHEAVVWKTLLSACRLHKHIEYAQLASEKLVQLEQ 562
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ G +V++SN+YA +W D ++R M+ V+K PG S I + VVH FVA D +HP
Sbjct: 563 YDAGSYVLMSNMYATNNKWLDTFKLRSSMKERRVRKQPGQSWIHLKNVVHRFVALDTSHP 622
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++ +I+ EKL++ +K GY T +V+ DIEE+++E L HSEKLA+ FG+++TP G
Sbjct: 623 RSAEIYAYLEKLMERLKEMGYTSRTDLVVHDIEEEQRETSLKFHSEKLAIAFGIISTPVG 682
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T +RI KNLRVCEDCH A K I+ +REIVVRD RFH F+ G CSC D+W
Sbjct: 683 TALRIFKNLRVCEDCHEAIKFITRATDREIVVRDLYRFHHFKDGQCSCEDFW 734
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 17/160 (10%)
Query: 20 TLIDMYVKCGCLEGARRVF---IEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
+L+DMY KCG +E A +F + E F WS M+ G +G+ +EAL F +M+ G
Sbjct: 298 SLMDMYCKCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREG 357
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH------YGCMVDLLSRA 130
+ + AC + G V++GR+ +G + ++ H +VD+ S++
Sbjct: 358 VPAGQFILTSVASACANAGMVEQGRQV-------HGFVEKLGHRFDAPLASAIVDMYSKS 410
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
G L++A R+ K N +W +L H +A E
Sbjct: 411 GSLEDACRIFRSAQTK-NVALWTTMLCSYASHGQGRMALE 449
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 34/168 (20%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCG--------------------------CLE-- 32
R+H + +SG ++ +CN ++DMY KCG CL+
Sbjct: 147 RIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWNIVIRACLQDG 206
Query: 33 ---GARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH 89
GA ++F E R V +W+ ++ GL HG EAL +M+ G+ + T+ +
Sbjct: 207 DLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYTYSMVFA 266
Query: 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC-MVDLLSRAGFLQEA 136
G + D GR+ + ++ + GC ++D+ + G ++ A
Sbjct: 267 LAGLLSSRDLGRQLHGRVVV--AVLEEDAFVGCSLMDMYCKCGEMESA 312
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 84/183 (45%), Gaps = 8/183 (4%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEI--GIKPNGVTFIGLL 88
L A RVF R++ W+++I G A G+ + + +F +M++ PN G+L
Sbjct: 74 LHNAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVL 133
Query: 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPN 148
C +G V+ GRR + G+ P + ++D+ ++ G A M K +
Sbjct: 134 RCCAGLGDVESGRR-IHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQK-D 191
Query: 149 GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN-NGYHVVLSNIYAEAERWEDVARVRK 207
W ++ C ++ DL A++ D+ + + ++ ++S + E + R+++
Sbjct: 192 ATSWNIVIRACL--QDGDLV-GATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQ 248
Query: 208 LMR 210
++R
Sbjct: 249 MVR 251
>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Glycine max]
Length = 694
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 158/351 (45%), Positives = 225/351 (64%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + GF+ ++ V N LI+MY K G ++ + VF +M R + TW+AMI G + HG
Sbjct: 344 LHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGL 403
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K+AL F M+ PN VTFIG+L A H+G V EG + + + I P +EHY
Sbjct: 404 GKQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYT 463
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMV LLSRAG L EA F++ +K + V W LL C VH+N DL + + Q+DP
Sbjct: 464 CMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPH 523
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G + +LSN+YA+A RW+ V +RKLMR +KK PG S + + +H F++ HP+
Sbjct: 524 DVGTYTLLSNMYAKARRWDGVVTIRKLMRERNIKKEPGASWLDIRNDIHVFLSEGSNHPE 583
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ +I++ ++LL +K GY+PN + VL D+E+++KE +L HSEKLAL +GLM P
Sbjct: 584 SIQIYKKVQQLLALIKPLGYVPNIASVLHDVEDEQKEGYLSYHSEKLALAYGLMKIPSPA 643
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLR+C+DCH A KLIS++ NR I+VRD NRFH F+ GSC+C D+W
Sbjct: 644 PIRIIKNLRMCDDCHTAVKLISKVTNRLIIVRDANRFHHFRDGSCTCLDHW 694
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH + G + V + LIDMY KCG + AR VF ++ R V W+A++ +G
Sbjct: 242 RVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNG 301
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+E+L F M G PN TF LL+AC + + G ++ + G +
Sbjct: 302 YFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHG-DLLHARVEKLGFKNHVIVR 360
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++++ S++G + +Y +M I + + W A++ G H
Sbjct: 361 NALINMYSKSGSIDSSYNVFTDM-IYRDIITWNAMICGYSHH 401
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 2/139 (1%)
Query: 7 NQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEAL 66
NQ+ +I N+L+ +YVKCG L AR +F M R V +W+ ++ G G E L
Sbjct: 42 NQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVL 101
Query: 67 TSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125
F M+ + PN F L AC H G V EG + + + ++G++ +V
Sbjct: 102 VLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQ-CHGLLFKFGLVCHQYVKSALVH 160
Query: 126 LLSRAGFLQEAYEFIRNMP 144
+ SR ++ A + + +P
Sbjct: 161 MYSRCSHVELALQVLDTVP 179
>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
[Vitis vinifera]
Length = 1724
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 153/352 (43%), Positives = 227/352 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + GF ++ V N +DMY KCG + ++ + R+ +W+ +I A HG
Sbjct: 1373 QLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHG 1432
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++A +F++M+++G KP+ VTF+ LL AC H G VDEG ++ SMT E+G+ P IEH
Sbjct: 1433 CFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHC 1492
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C++DLL R+G L A FI+ MP+ PN + W +LL CR+H N++LA + + L +LDP
Sbjct: 1493 VCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDP 1552
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+ SN+ A + +WEDV +RK M + +KK P S + + VH F G++ HP
Sbjct: 1553 SDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHP 1612
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
QA +I +L+ K GY+P+TS L D++E++KE L+ HSE+LAL FGL+NTP
Sbjct: 1613 QASRISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPES 1672
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ +RI KNLRVC DCH+ +K +S IV R+IV+RD RFH F G CSCGDYW
Sbjct: 1673 STLRIFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1724
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 134/221 (60%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ + ++ + N LIDMY K G +E A+R F EMEE+ V +W+++I G A HG
Sbjct: 355 QIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHG 414
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A++ + KM G KPN VTF+ LL AC H G EG F +M +Y I P+ EHY
Sbjct: 415 YGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHY 474
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDL +R G L+EAY + + IK N +WGA+LG ++ + L +EA+ L + P
Sbjct: 475 SCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQP 534
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWS 221
N+ +VVL++IY+ A W+D ++RKLM KK G+S
Sbjct: 535 ENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKNAGYS 575
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 99/217 (45%), Gaps = 8/217 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + +GF + V N+LI MY KCG L + +F + ++ TW+AM+ A HG
Sbjct: 1273 IHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGC 1332
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL F +M +G+ + +F G L A ++ ++EG++ + + + G +
Sbjct: 1333 GEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQ-LHGLVIKLGFESDLHVTN 1391
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+D+ + G + + + + PI + + W L+ H A E ++ +L P
Sbjct: 1392 AAMDMYGKCGEMHDVLKMLPQ-PINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPK 1450
Query: 182 NNGYHVVLSNIYAEAERW----EDVARVRKLMRNLGV 214
+ HV ++ + E +A + R GV
Sbjct: 1451 PD--HVTFVSLLSACNHGGLVDEGLAYYDSMTREFGV 1485
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 3/141 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NTLI+MY K G +E AR VF EM R +WS M+ G G +EA+ F +M +G++
Sbjct: 783 NTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVE 842
Query: 79 PNGVTFIGLLHACGHMGWV-DEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAY 137
PNG L+ AC G++ DEG + + + GI+ + +V G + A
Sbjct: 843 PNGFMVASLITACSRSGYMADEGFQ-VHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQ 901
Query: 138 EFIRNMPIKPNGVVWGALLGG 158
+ MP N V W +L+ G
Sbjct: 902 KLFEEMP-DHNVVSWTSLMVG 921
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 2/165 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + +GF ++ + LI YVK G + AR VF M ER+V +W+AM+ G + +G+
Sbjct: 52 IHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGR 111
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++A F+ M G+K N T+ L AC + +D G + + + +
Sbjct: 112 FEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQ-VQGCIQKGRFVENLFVKS 170
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNID 166
+VD S+ G +++A M ++ + V W A++GG V D
Sbjct: 171 ALVDFHSKCGKMEDASYLFGTM-MERDVVSWNAMIGGYAVQGFAD 214
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 79/157 (50%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G N+ +CNTL+ +Y + G E A VF M ER + +W++M+ G+
Sbjct: 1070 IHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGK 1129
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ L +++++G N VTF L AC + + E + +++ G +
Sbjct: 1130 CLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIE-SKIVHALIIVAGFHDFLIVGN 1188
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V + + G + EA + ++ MP +P+ V W AL+GG
Sbjct: 1189 ALVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGG 1224
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 22/175 (12%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
F N+ V + L+D + KCG +E A +F M ER V +W+AMI G A+ G A ++ F
Sbjct: 162 FVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFR 221
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH------YGCMV 124
M+ G+ P+ T +L A G + + +GII Q+ + G ++
Sbjct: 222 SMLRGGLVPDCYTLGSVLRASAEGGGLIIANQI-------HGIITQLGYGSYDIVTGLLI 274
Query: 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
+ ++ G L+ A + + M +K + AL+ G A E +D LD
Sbjct: 275 NAYAKNGSLRSAKDLRKGM-LKKDLFSSTALITG--------YAHEGIYSVDALD 320
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH +GF + V N L+ MY K G + A++V M + TW+A+I G A + +
Sbjct: 1171 VHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEE 1230
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHAC 91
EA+ ++ + E GI N +T + +L AC
Sbjct: 1231 PNEAVKAYKLIREKGIPANYITMVSVLGAC 1260
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
Q GF ++ V N+LI M+ +E A VF M E + +W+AMI A HG +E+L
Sbjct: 975 QYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLR 1034
Query: 68 SFNKMIEIGIKPNGVT 83
F+ M + + N T
Sbjct: 1035 CFHWMRHLHNETNSTT 1050
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Q G+ V LI+ Y K G L A+ + M ++ +F+ +A+I G A G
Sbjct: 253 QIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEG 312
Query: 61 -QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+ +AL F +M ++ I + V +L+ C ++ G + ++ +Y +
Sbjct: 313 IYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQ-IHAFALKYQPSYDVAM 371
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ +++G +++A M K N + W +L+ G H
Sbjct: 372 GNALIDMYAKSGEIEDAKRAFDEMEEK-NVISWTSLISGYAKH 413
>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
Length = 1083
Score = 327 bits (839), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 153/352 (43%), Positives = 227/352 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + GF ++ V N +DMY KCG + ++ + R+ +W+ +I A HG
Sbjct: 732 QLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHG 791
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++A +F++M+++G KP+ VTF+ LL AC H G VDEG ++ SMT E+G+ P IEH
Sbjct: 792 CFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHC 851
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C++DLL R+G L A FI+ MP+ PN + W +LL CR+H N++LA + + L +LDP
Sbjct: 852 VCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDP 911
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+ SN+ A + +WEDV +RK M + +KK P S + + VH F G++ HP
Sbjct: 912 SDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHP 971
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
QA +I +L+ K GY+P+TS L D++E++KE L+ HSE+LAL FGL+NTP
Sbjct: 972 QASRISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPES 1031
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ +RI KNLRVC DCH+ +K +S IV R+IV+RD RFH F G CSCGDYW
Sbjct: 1032 STLRIFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1083
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 76/174 (43%), Gaps = 36/174 (20%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA---------------- 62
N LIDMY K G +E A+R F EMEE+ V +W+++I G A HG
Sbjct: 279 NALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAHARYVFDEMRHRN 338
Query: 63 -----------------KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWV-DEGRRFF 104
+EA+ F +M +G++PNG L+ AC G++ DEG +
Sbjct: 339 EASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQ-V 397
Query: 105 YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ + GI+ + +V G + A + MP N V W +L+ G
Sbjct: 398 HGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMP-DHNVVSWTSLMVG 450
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 117/280 (41%), Gaps = 33/280 (11%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + +GF ++ + LI YVK G + AR VF M ER+V +W+AM+ G + +G+
Sbjct: 52 IHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGR 111
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++A F+ M G+K N + CG M E + + E ++ +
Sbjct: 112 FEKAFVLFSDMRHCGVKANH-ALVDFHSKCGKM----EDASYLFGTMMERDVVS----WN 162
Query: 122 CMVDLLSRAGFLQEAYEFIRNM---PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
M+ + GF +++ R+M + P+ G++L + +A + + QL
Sbjct: 163 AMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQL 222
Query: 179 DPLNNGYHVV---LSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAG 235
Y +V L N YA+ +RK M +KK S+ + G H
Sbjct: 223 G--YGSYDIVTGLLINAYAKNGSLRSAKDLRKGM----LKKDLFSSTALITGYAH----- 271
Query: 236 DETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEK 275
E I+ M L+D G I + ++EEK
Sbjct: 272 -------EGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEK 304
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 6/209 (2%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
Q GF ++ V N+LI M+ +E A VF M E + +W+AMI A HG +E+L
Sbjct: 504 QYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLR 563
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F+ M + + N T LL C + + GR + + + G+ + ++ L
Sbjct: 564 CFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRG-IHGLVVKLGLDSNVCICNTLLTLY 622
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH--KNIDLAEEASRQLDQLDPLNNGY 185
S AG ++A E + + + + W +++ C V K +D + + L P +
Sbjct: 623 SEAGRSEDA-ELVFQAMTERDLISWNSMM-ACYVQDGKCLDGLKILAELLQMGKPDRVTW 680
Query: 186 HVVLSNIYAEAERWEDVARVRKLMRNLGV 214
+ ++ +AE E + + KL+R G+
Sbjct: 681 NALIGG-HAENEEPNEAVKAYKLIREKGI 708
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 99/251 (39%), Gaps = 43/251 (17%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVF-------------- 47
+H + G N+ +CNTL+ +Y + G E A VF M ER +
Sbjct: 599 IHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGK 658
Query: 48 --------------------TWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGL 87
TW+A+I G A + + EA+ ++ + E GI N +T + L
Sbjct: 659 CLDGLKILAELLQMGKPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSL 718
Query: 88 LHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKP 147
A ++ ++EG++ + + + G + +D+ + G + + + + PI
Sbjct: 719 A-ATANLAVLEEGQQ-LHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQ-PINR 775
Query: 148 NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERW----EDVA 203
+ + W L+ H A E ++ +L P + HV ++ + E +A
Sbjct: 776 SRLSWNILISAFARHGCFQKARETFHEMLKLGPKPD--HVTFVSLLSACNHGGLVDEGLA 833
Query: 204 RVRKLMRNLGV 214
+ R GV
Sbjct: 834 YYDSMTREFGV 844
>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
[Vitis vinifera]
Length = 1005
Score = 327 bits (839), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 155/352 (44%), Positives = 226/352 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++G ++ V + L+DMY KCGC+E A VF + R +W+ +I G + HG
Sbjct: 654 QLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHG 713
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q +AL +F M++ G P+ VTFIG+L AC HMG ++EG++ F S++ YGI P IEHY
Sbjct: 714 QGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHY 773
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVD+L RAG E FI M + N ++W +LG C++H NI+ E A+ +L +L+P
Sbjct: 774 ACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEP 833
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ +++LSN++A W+DV VR LM GVKK PG S + V+G VH F++ D +HP
Sbjct: 834 EIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHP 893
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I + L + GY PNT VL ++ ++EK++ L+ HSE+LAL F L++T
Sbjct: 894 KIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTR 953
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI KNLR+C DCH K ISEI N+E+VVRD N FH F+ GSCSC ++W
Sbjct: 954 KTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 1005
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + GF + VCN L+ MY+K G ++ RVF R + +W+A++ G +
Sbjct: 453 IHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNET 512
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
L FN+M+ G PN TFI +L +C + VD G++ ++ + +
Sbjct: 513 CDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQ-VHAQIVKNSLDGNDFVGT 571
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ ++ FL++A E I N IK + W ++ G
Sbjct: 572 ALVDMYAKNRFLEDA-ETIFNRLIKRDLFAWTVIVAG 607
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH ++ N V L+DMY K LE A +F + +R +F W+ ++ G A G
Sbjct: 553 QVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDG 612
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q ++A+ F +M G+KPN T L C + +D GR+ +SM + G +
Sbjct: 613 QGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQ-LHSMAIKAGQSGDMFVA 671
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ ++ G +++A E + + + + V W ++ G H
Sbjct: 672 SALVDMYAKCGCVEDA-EVVFDGLVSRDTVSWNTIICGYSQH 712
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +SG + + N+L+++Y KCG A +VF E+ ER V +W+A+I G G
Sbjct: 150 IHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGY 209
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+ F +M G++ N T+ L AC ++ G++ ++ + G +
Sbjct: 210 GSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQ-VHAEAIKVGDFSDLFVGS 268
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VDL ++ G + A MP K N V W ALL G
Sbjct: 269 ALVDLYAKCGEMVLAERVFLCMP-KQNAVSWNALLNG 304
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 8/168 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + G + + L+DMY KCG A +VF+ +E+ V +WSA+I L GQ
Sbjct: 352 VHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQ 411
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++EA F +M G+ PN T L+ A +G + G ++ +YG
Sbjct: 412 SREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGES-IHACVCKYGFEYDNTVCN 470
Query: 122 CMVDLLSRAGFLQEA---YEFIRNMPIKPNGVVWGALLGGCRVHKNID 166
+V + + G +Q+ +E N + + W ALL G ++ D
Sbjct: 471 ALVTMYMKIGSVQDGCRVFEATTNRDL----ISWNALLSGFHDNETCD 514
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 2/156 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + G ++ V + L+D+Y KCG + A RVF+ M ++ +W+A++ G A G
Sbjct: 250 QVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMG 309
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A++ L F +M I + T +L C + G + G + +S+ G
Sbjct: 310 DAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAG-QIVHSLAIRIGCELDEFIS 368
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
C+VD+ S+ G +A + + P+ V W A++
Sbjct: 369 CCLVDMYSKCGLAGDALKVFVRIE-DPDVVSWSAII 403
>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
Length = 684
Score = 327 bits (839), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 157/334 (47%), Positives = 221/334 (66%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
++DMY KCG LE AR++F ++ R + W+AMI HG +AL F ++ E GIK
Sbjct: 351 TAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNETGIK 410
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P+ TF LL A H G V+EG+ +F M TE+GI P +H C+VDLL+R+G ++EA E
Sbjct: 411 PDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANE 470
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAER 198
+ +M +P +W ALL GC +K ++L E ++++ + P + G ++SN+YA A++
Sbjct: 471 MLASMHTEPTIPIWVALLSGCLNNKKLELGETIAKKILESQPEDIGVLALVSNLYAAAKK 530
Query: 199 WEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKL 258
W+ V +RKLM++ G KK PG+S I V G H FV D++HPQ ++I +M KL M+
Sbjct: 531 WDKVREIRKLMKDSGSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILKMISKLSFEMRK 590
Query: 259 KGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAA 318
GY+P T V D++E KE+ L HSE+LA+ FGL+NT PGT + I+KNLRVC DCH A
Sbjct: 591 MGYVPRTEFVYHDLDEDVKEQLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDA 650
Query: 319 FKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
K IS+IV+REIVVRD RFH F+ G+CSCGDYW
Sbjct: 651 IKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 684
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 125/274 (45%), Gaps = 37/274 (13%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + G R ++ + +L+DMY K G + AR+VF M R +W+A+I G A +G
Sbjct: 234 VHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGH 293
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A EAL F +M G++P+ + L AC +G++ G+ +G I + +
Sbjct: 294 ADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSI-------HGFILRRLEFQ 346
Query: 122 CM-----VDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLD 176
C+ +D+ S+ G L+ A + + + + V+W A++ C H A ++L+
Sbjct: 347 CILGTAVLDMYSKCGSLESARKLFNKLSSR-DLVLWNAMIACCGTHGCGHDALALFQELN 405
Query: 177 Q--LDPLNNGYHVVL-----SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD--- 226
+ + P + + +L S + E + W D +++ G++ T VD
Sbjct: 406 ETGIKPDHATFASLLSALSHSGLVEEGKFWFD-----RMITEFGIEPTEKHCVCVVDLLA 460
Query: 227 --GVV---HEFVAGDETHPQAEKIFQMWEKLLDG 255
G+V +E +A T P +W LL G
Sbjct: 461 RSGLVEEANEMLASMHTEPT----IPIWVALLSG 490
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 14/180 (7%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RV ++ +G+ R++ VC+ L+ +Y +CG + A RVF M + WS M+ G G
Sbjct: 134 RVRAFA--AGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAG 191
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHAC-----GHMGWVDEGRRFFYSMTTEYGIIP 115
+ EAL +++M E G+ + V +G++ AC MG GR + M + I
Sbjct: 192 RPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIAT 251
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
+VD+ ++ G A + R MP + N V W AL+ G + + D A + R++
Sbjct: 252 S------LVDMYAKNGHFDVARQVFRMMPYR-NAVSWNALISGFAQNGHADEALDLFREM 304
>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
1
gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 684
Score = 327 bits (838), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 163/353 (46%), Positives = 221/353 (62%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ ++ R I V + L+DMY KCGC+E + + F EM E+ + T +++I G A GQ
Sbjct: 332 IHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQ 391
Query: 62 AKEALTSFNKMIE--IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
AL F +M G PN +TF+ LL AC G V+ G + F SM + YGI P EH
Sbjct: 392 VDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEH 451
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y C+VD+L RAG ++ AYEFI+ MPI+P VWGAL CR+H L A+ L +LD
Sbjct: 452 YSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLD 511
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P ++G HV+LSN +A A RW + VR+ ++ +G+KK G+S ITV VH F A D +H
Sbjct: 512 PKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSH 571
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
++I KL + M+ GY P+ + L D+EE+EK + HSEKLAL FGL++ P
Sbjct: 572 ILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPL 631
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLR+C DCH+ FK +S V REI+VRD NRFH F+ G CSC DYW
Sbjct: 632 SVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SGF ++ VCN LID Y KC + + +F EM + +W +++ +
Sbjct: 230 QLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNH 289
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ ++A + + + ++ + +L AC M ++ GR ++ + + I
Sbjct: 290 EDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRS-IHAHAVKACVERTIFVG 348
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
+VD+ + G ++++ + MP K N V +L+GG +D+A
Sbjct: 349 SALVDMYGKCGCIEDSEQAFDEMPEK-NLVTRNSLIGGYAHQGQVDMA 395
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G ++ V + DMY K + AR++F E+ ER + TW+A I G
Sbjct: 129 QIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDG 188
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +EA+ +F + I PN +TF L+AC ++ G + + + G +
Sbjct: 189 RPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQ-LHGLVLRSGFDTDVSVC 247
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D + ++ + M K N V W +L+
Sbjct: 248 NGLIDFYGKCKQIRSSEIIFTEMGTK-NAVSWCSLVAA 284
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 4/142 (2%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
+ N LI+MY K E AR V R V +W+++I GLA +G AL F +M G
Sbjct: 44 LANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREG 103
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMV-DLLSRAGFLQE 135
+ PN TF A + G++ +++ + G I + GC D+ + +
Sbjct: 104 VVPNDFTFPCAFKAVASLRLPVTGKQ-IHALAVKCGRILDV-FVGCSAFDMYCKTRLRDD 161
Query: 136 AYEFIRNMPIKPNGVVWGALLG 157
A + +P + N W A +
Sbjct: 162 ARKLFDEIPER-NLETWNAFIS 182
>gi|302773103|ref|XP_002969969.1| hypothetical protein SELMODRAFT_92492 [Selaginella moellendorffii]
gi|300162480|gb|EFJ29093.1| hypothetical protein SELMODRAFT_92492 [Selaginella moellendorffii]
Length = 331
Score = 327 bits (838), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 158/331 (47%), Positives = 217/331 (65%), Gaps = 2/331 (0%)
Query: 24 MYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEI--GIKPNG 81
MY KCG ++ AR+VF +R V W++MI A +GQ + +L F +M E +PN
Sbjct: 1 MYGKCGSVDEARQVFEAFPDRDVALWNSMIAAYAQNGQGEMSLQVFERMKEATNNARPNA 60
Query: 82 VTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIR 141
+TF+ +L AC H ++ GR +F SM T +GI P +HY CM+DLL R+G L +A+ +
Sbjct: 61 ITFVHVLCACSHARLIERGRSYFGSMETVFGIQPSSQHYRCMIDLLGRSGNLDQAWNILH 120
Query: 142 NMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWED 201
+MP++P+ + W +L CR H N++L E + +L +++P + +V+LSNIYA +RW+D
Sbjct: 121 SMPLEPDSLAWTTMLSACRAHSNVELGELCAERLFEMEPEYSAPYVLLSNIYAARDRWDD 180
Query: 202 VARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGY 261
VAR+RKLM + GVKK G SSI V VHEFVAGD HP+ E+I+Q +L MK GY
Sbjct: 181 VARIRKLMADKGVKKPSGRSSIEVGDKVHEFVAGDRAHPRREEIYQELSRLGSQMKALGY 240
Query: 262 IPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAAFKL 321
I + S L D EE+EKE+ L+ HSEKLA+ FG + TP + ++KNLRVC DCH A K
Sbjct: 241 IQDRSSALRDGEEEEKEQMLWYHSEKLAIAFGSVATPARKSLYVIKNLRVCTDCHTASKF 300
Query: 322 ISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IS I REIV+RD RFH F+ G CSCGDYW
Sbjct: 301 ISRITGREIVLRDPYRFHHFRDGWCSCGDYW 331
>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g52630-like [Cucumis sativus]
Length = 598
Score = 327 bits (838), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 158/351 (45%), Positives = 232/351 (66%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + F + V + LI +Y KCG +EGA +VF E+ R + W++M+ A H
Sbjct: 249 IHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAH 308
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+ F +M +G+KPN ++F+ +L+AC H G V++GR +F S+ +YGI P+ EHY
Sbjct: 309 TQRVFGLFEEMGNVGMKPNFISFLSVLYACSHAGLVEKGREYF-SLMRDYGIEPETEHYA 367
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+VDLL RAG LQEA I+ MP++P VWGALL GCR+HK+ ++A + ++ ++D
Sbjct: 368 SLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSS 427
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G HV+LSN YA A R+E+ AR+RK++R+ GVKK G S + VH F AGD +H +
Sbjct: 428 SSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAK 487
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I++ E+L + M+ GY+ +TS VL ++ +EK + + HSE+LA+ FGL+ PPG
Sbjct: 488 WVEIYEKLEELEEEMEKAGYVADTSFVLRAVDGEEKNETIRYHSERLAIAFGLITFPPGR 547
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+MKNLRVC DCHAA K +S+ R ++VRD NRFH F+ G CSCGDYW
Sbjct: 548 PIRVMKNLRVCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGDYW 598
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 2/163 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + ++G+ ++ V ++L+DMY KCG + AR +F EM ER V +WS MI G A
Sbjct: 148 VHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDD 207
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EALT F + + + N TF ++ C +++ G + + + +
Sbjct: 208 GVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELG-KLIHGLCLKMSFDSSSFVGS 266
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKN 164
++ L S+ G ++ AY+ +P + G +W ++L C H +
Sbjct: 267 ALISLYSKCGVIEGAYQVFDEIPTRNLG-LWNSMLIACAQHAH 308
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 74/158 (46%), Gaps = 2/158 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G + V + LI++Y K + +VF E +++ TWS++I A +
Sbjct: 46 QLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNE 105
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
AL F +M+ G++P+ + ACG + D G+ + + + G +
Sbjct: 106 APLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKS-VHCLAVKTGYYCDVFVG 164
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ ++ G + +A MP + N V W ++ G
Sbjct: 165 SSLVDMYAKCGEIGDARHLFDEMPER-NVVSWSGMIYG 201
>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Cucumis sativus]
gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Cucumis sativus]
Length = 938
Score = 327 bits (838), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 161/355 (45%), Positives = 232/355 (65%), Gaps = 6/355 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + GF + + N +DMY KCG L+ A R+ + +R+ +W+ +I A HG
Sbjct: 587 QLHGSTIKLGFELDHFIINAAMDMYGKCGELDDALRILPQPTDRSRLSWNTLISISARHG 646
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q +A +F+ M+++G+KPN V+F+ LL AC H G VDEG ++ SMT+ YGI P IEH
Sbjct: 647 QFHKAKETFHDMLKLGVKPNHVSFVCLLSACSHGGLVDEGLAYYASMTSVYGIQPGIEHC 706
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DLL R+G L EA FI MPI PN +VW +LL CR+++N+DL +A++ L +LDP
Sbjct: 707 VCMIDLLGRSGRLVEAEAFITEMPIPPNDLVWRSLLASCRIYRNLDLGRKAAKHLLELDP 766
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+ SN++A RWEDV VR M ++K P S + G + F GD+THP
Sbjct: 767 SDDSAYVLYSNVFATIGRWEDVEDVRGQMGAHKIQKKPAHSWVKWKGNISIFGMGDQTHP 826
Query: 241 QAEKIFQMWEKLLDGMKL---KGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNT 297
Q E Q+ KLL MK+ GY+P+TS L D +E++KE ++ HSE++AL FGL+N
Sbjct: 827 QME---QINGKLLGLMKIVGEAGYVPDTSYSLQDTDEEQKEHNMWSHSERIALAFGLINI 883
Query: 298 PPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P G+ +RI KNLRVC DCH+ FK +S ++ R+IV+RD RFH F G+CSC DYW
Sbjct: 884 PEGSTVRIFKNLRVCGDCHSFFKFVSGVLGRKIVLRDPYRFHHFTNGNCSCSDYW 938
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 3/203 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + + G NI +CNTL+ +Y G + A +F M ER + +W++M+ G+
Sbjct: 283 VHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGR 342
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AL F +M+ + + N VTF L AC + G + + G+ ++
Sbjct: 343 CLCALKVFAEMLWMKKEINYVTFTSALAACLDPEFFTNG-KILHGFVVVLGLQDELIIGN 401
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
++ + + EA + + MP K + V W AL+GG + ++ A A + + +
Sbjct: 402 TLITFYGKCHKMAEAKKVFQRMP-KLDKVTWNALIGGFANNAELNEAVAAFKLMREGSTS 460
Query: 182 NNGYHVVLSNIYAEAERWEDVAR 204
Y + + NI ED+ +
Sbjct: 461 GVDY-ITIVNILGSCLTHEDLIK 482
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 84/179 (46%), Gaps = 6/179 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H ++ +GF + V ++LI MY KCG L + +F ++ +T W+A+I A +G
Sbjct: 487 IHAHTVVTGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAANARYGF 546
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY- 120
+EAL +M GI+ + F L + ++EG++ + T + G +++H+
Sbjct: 547 GEEALKLVVRMRSAGIEFDQFNFSTALSVAADLAMLEEGQQ-LHGSTIKLGF--ELDHFI 603
Query: 121 -GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+D+ + G L +A I P + + W L+ H A+E + +L
Sbjct: 604 INAAMDMYGKCGELDDALR-ILPQPTDRSRLSWNTLISISARHGQFHKAKETFHDMLKL 661
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 2/148 (1%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G + N+LI M+ CG + A +F EM ER +W+++I A + +E+ F
Sbjct: 190 GLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNTLHEESFRYF 249
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+ M + + N T LL CG + ++ G+ + + +YG+ I ++ + S
Sbjct: 250 HWMRLVHEEINYTTLSILLSICGSVDYLKWGKG-VHGLAVKYGLESNICLCNTLLSVYSD 308
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLG 157
AG ++A R MP + + + W ++L
Sbjct: 309 AGRSKDAELIFRRMP-ERDLISWNSMLA 335
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 1/133 (0%)
Query: 24 MYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVT 83
MY K G + A+ VF M ER +W+ M+ G G EA+ F + IGIKP+G
Sbjct: 1 MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFM 60
Query: 84 FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM 143
L+ AC + + F+ + G+I + V + G + A + M
Sbjct: 61 IASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEM 120
Query: 144 PIKPNGVVWGALL 156
P + N V W +L+
Sbjct: 121 PDR-NVVSWTSLM 132
>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
Length = 472
Score = 327 bits (838), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 160/353 (45%), Positives = 226/353 (64%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H ++ +S ++ V + L+ MY K G +E A VF E+ + +W++MI G A HG
Sbjct: 120 QFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHG 179
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
QA +AL F +M + +K +GVTFIG+ AC H G V+EG ++F M + I P EH
Sbjct: 180 QAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHN 239
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDL SRAG L++A + I NMP +W +L CRVHK +L A+ ++ + P
Sbjct: 240 SCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKP 299
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+LSN+YAE+ W++ A+VRKLM VKK PG+S I V + F+AGD +HP
Sbjct: 300 EDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHP 359
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++I+ E L +K GY P+TS VL DI+++ KE L +HSE+LA+ FGL+ TP G
Sbjct: 360 LKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKG 419
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQA-GSCSCGDYW 352
+P+ I+KNLRVC DCH KLI++I REIVVRD NRFH F + G CSCGD+W
Sbjct: 420 SPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 472
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 96/187 (51%), Gaps = 15/187 (8%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++ + R+ V L+D YVK G +E A +VF ++++ + WSAM+ G A G+
Sbjct: 19 VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGE 78
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM-GWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ A+ F ++ + GIKPN TF +L+ C + +G++F + I +++
Sbjct: 79 TEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFH-----GFAIKSRLDSS 133
Query: 121 GC----MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEAS 172
C ++ + ++ G ++ A E + K + V W +++ G H K +D+ +E
Sbjct: 134 LCVSSALLTMYAKKGNIESAEEVFKRQREK-DLVSWNSMISGYAQHGQAMKALDVFKEMK 192
Query: 173 RQLDQLD 179
++ ++D
Sbjct: 193 KRKVKMD 199
>gi|5280987|emb|CAB46001.1| hypothetical protein [Arabidopsis thaliana]
gi|7268109|emb|CAB78447.1| hypothetical protein [Arabidopsis thaliana]
Length = 686
Score = 327 bits (838), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 155/338 (45%), Positives = 219/338 (64%), Gaps = 8/338 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N LIDMY KC + A+ +F M R V +W+++I G+A HGQA++AL ++ M+ G+K
Sbjct: 331 NALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVK 390
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
PN VTF+GL++AC H+G+V++GR F SMT +YGI P ++HY C++DLL R+G L EA
Sbjct: 391 PNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAEN 450
Query: 139 FIRNMPIKPNGVVWGALLGGC----RVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYA 194
I MP P+ W ALL C R I +A+ DP +++LSNIYA
Sbjct: 451 LIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDP---STYILLSNIYA 507
Query: 195 EAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLD 254
A W V+ R+ + + V+K PG SS+ V F AG+ +HP E IF++ +KL +
Sbjct: 508 SASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEE 567
Query: 255 GMKLK-GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCE 313
M+++ GY+P+TS +L D++E+EKEK L+ HSE+ A+ +GL+ PGTPIRI+KNLRVC
Sbjct: 568 EMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCG 627
Query: 314 DCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDY 351
DCH K ISEI REI+VRD R+H F+ G CSC D+
Sbjct: 628 DCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDF 665
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 123/316 (38%), Gaps = 69/316 (21%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGL-AIHG 60
+H + + G + + NTL+++Y KCG A +VF EM R W++++ L +
Sbjct: 93 LHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANL 152
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEH 119
K + G++P+ F L+ AC ++G +D GR+ + + +EY ++
Sbjct: 153 SGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVK- 211
Query: 120 YGCMVDLLSRAGFL-------------------------------QEAYEFIRNMPIKPN 148
+VD+ ++ G L +EA E R +P+K N
Sbjct: 212 -SSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVK-N 269
Query: 149 GVVWGALLGG-CRVHKNID----LAEEASRQLDQLDPL----------NNGYHVVLSNIY 193
W AL+ G + K ++ E ++D LDPL N + ++
Sbjct: 270 LYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVH 329
Query: 194 AEA-----ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQM 248
A + DV + + + + W+S+ V G H QAEK +
Sbjct: 330 GNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIV---------GMAQHGQAEKALAL 380
Query: 249 WEKLLDGMKLKGYIPN 264
+ D M G PN
Sbjct: 381 Y----DDMVSHGVKPN 392
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.139 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,669,125,824
Number of Sequences: 23463169
Number of extensions: 236865853
Number of successful extensions: 651123
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7757
Number of HSP's successfully gapped in prelim test: 3091
Number of HSP's that attempted gapping in prelim test: 587423
Number of HSP's gapped (non-prelim): 42161
length of query: 352
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 209
effective length of database: 9,003,962,200
effective search space: 1881828099800
effective search space used: 1881828099800
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 77 (34.3 bits)