BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048117
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ON2|A Chain A, Structure Of A Protein With Unknown Function From
Rhodococcus Sp. Rha1
pdb|3ON2|B Chain B, Structure Of A Protein With Unknown Function From
Rhodococcus Sp. Rha1
pdb|3ON2|C Chain C, Structure Of A Protein With Unknown Function From
Rhodococcus Sp. Rha1
pdb|3ON2|D Chain D, Structure Of A Protein With Unknown Function From
Rhodococcus Sp. Rha1
Length = 199
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 40/110 (36%), Gaps = 20/110 (18%)
Query: 238 THPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKE-------------KFLYRH 284
+H K F+ + LLD + G++ T+ + +EE E F H
Sbjct: 45 SHAAPSKHFRDRQALLDALAESGFLRLTAALERAVEEAESHARARFAALAGAYVSFALAH 104
Query: 285 SEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRD 334
E LAL +G + P +V E HA+ L IV D
Sbjct: 105 RELLALXYGNKHAPGAAS-------QVVEAGHASXDLTVRIVTEAQAAGD 147
>pdb|3T4C|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
pdb|3T4C|B Chain B, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
pdb|3T4C|C Chain C, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
pdb|3T4C|D Chain D, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
Length = 288
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 18/107 (16%)
Query: 78 KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGI--------IPQIEHYGCMVDLLSR 129
+ +G +F GL +DEG R + + G+ I +IE +VD+L
Sbjct: 62 RSSGKSFRGL--------GMDEGLRILGEVKRQLGLPVLTDVHSIDEIEQVASVVDVLQT 113
Query: 130 AGFLQEAYEFIRNMPI--KPNGVVWGALLGGCRVHKNIDLAEEASRQ 174
FL +FI KP + G L + ID A EA+R+
Sbjct: 114 PAFLCRQTDFIHACARSGKPVNIKKGQFLAPHDMKNVIDKAREAARE 160
>pdb|3TML|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
pdb|3TML|B Chain B, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
pdb|3TML|C Chain C, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
pdb|3TML|D Chain D, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
Length = 288
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 18/107 (16%)
Query: 78 KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGI--------IPQIEHYGCMVDLLSR 129
+ +G +F GL +DEG R + + G+ I +IE +VD+L
Sbjct: 62 RSSGKSFRGL--------GMDEGLRILSEVKRQLGLPVLTDVHSIDEIEQVASVVDVLQT 113
Query: 130 AGFLQEAYEFIRNMPI--KPNGVVWGALLGGCRVHKNIDLAEEASRQ 174
FL +FI KP + G L + ID A +A+R+
Sbjct: 114 PAFLCRQTDFIHACARSGKPVNIKKGQFLAPHDMKNVIDKARDAARE 160
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 498
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 287 KLALTFGLMNTPPGTPIRI-MKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGS 345
K+AL +G MN PPG +R+ + L + E F+ ++E +++++ N F QAGS
Sbjct: 231 KVALVYGQMNEPPGARMRVGLTALTMAE----YFRDVNE---QDVLLFIDNIFRFVQAGS 283
>pdb|3KHB|A Chain A, Crystal Structure Of Escherichia Coli Alkb With Co(Ii) And
2-Og
pdb|3KHB|B Chain B, Crystal Structure Of Escherichia Coli Alkb With Co(Ii) And
2-Og
Length = 219
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYS-----MTTEYGIIPQIEHYGC 122
+ P G T + CGH+GW + + YS + +PQ H C
Sbjct: 53 VTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLC 103
>pdb|3T3Y|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Iii) And
2-(3- Hydroxypicolinomido)acetic Acid
pdb|3T4H|B Chain B, Crystal Structure Of Alkb In Complex With Fe(Iii) And
N-Oxalyl-S-(3- Nitrobenzyl)-L-Cysteine
pdb|3T4V|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Iii) And
N-Oxalyl-S-(2- Napthalenemethyl)-L-Cysteine
Length = 206
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYS-----MTTEYGIIPQIEHYGC 122
+ P G T + CGH+GW + + YS + +PQ H C
Sbjct: 40 VTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLC 90
>pdb|3O1M|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna
Repair Dioxygenase
pdb|3O1O|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna
Repair Dioxygenase
pdb|3O1P|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna
Repair Dioxygenase
pdb|3O1R|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna
Repair Dioxygenase
pdb|3O1S|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna
Repair Dioxygenase
pdb|3O1T|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna
Repair Dioxygenase
pdb|3O1U|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna
Repair Dioxygenase
pdb|3O1V|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna
Repair Dioxygenase
Length = 206
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYS-----MTTEYGIIPQIEHYGC 122
+ P G T + CGH+GW + + YS + +PQ H C
Sbjct: 40 VTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLC 90
>pdb|3KHC|A Chain A, Crystal Structure Of Escherichia Coli Alkb In Complex With
Ssdna Containing A 1-Methylguanine Lesion
pdb|3KHC|B Chain B, Crystal Structure Of Escherichia Coli Alkb In Complex With
Ssdna Containing A 1-Methylguanine Lesion
Length = 219
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYS-----MTTEYGIIPQIEHYGC 122
+ P G T + CGH+GW + + YS + +PQ H C
Sbjct: 53 VTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLC 103
>pdb|2FD8|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Ii),
2-Oxoglutarate, And Methylated Trinucleotide T-Mea-T
pdb|2FDF|A Chain A, Crystal Structure Of Alkb In Complex With Co(Ii),
2-Oxoglutarate, And Methylated Trinucleotide T-Mea-T
pdb|2FDG|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Ii),
Succinate, And Methylated Trinucleotide T-Mea-T
pdb|2FDH|A Chain A, Crystal Structure Of Alkb In Complex With Mn(Ii),
2-Oxoglutarate, And Methylated Trinucleotide T-Mea-T
pdb|2FDI|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Ii),
2-Oxoglutarate, And Methylated Trinucleotide T-Mea-T
(Air 3 Hours)
pdb|2FDJ|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Ii) And
Succinate
pdb|2FDK|A Chain A, Crystal Structure Of Alkb In Complex With Fe(ii),
2-oxoglutarate, And Methylated Trinucleotide T-mea-t
(air 9 Days)
pdb|3I2O|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Ii),
2-Oxoglutarate And Methylated Trinucleotide T-Mea-T
pdb|3I3M|A Chain A, Crystal Structure Of Alkb In Complex With Mn(Ii),
2-Oxoglutarate And Methylated Trinucleotide T-Mec-T
pdb|3I3Q|A Chain A, Crystal Structure Of Alkb In Complex With Mn(Ii) And
2-Oxoglutarate
pdb|3I3Q|B Chain B, Crystal Structure Of Alkb In Complex With Mn(Ii) And
2-Oxoglutarate
pdb|3I49|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Ii),
2-Oxoglutarate And Methylated Trinucleotide T-Mec-T
Length = 211
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYS-----MTTEYGIIPQIEHYGC 122
+ P G T + CGH+GW + + YS + +PQ H C
Sbjct: 40 VTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLC 90
>pdb|3BKZ|A Chain A, X-Ray Structure Of E Coli Alkb Crosslinked To Dsdna In The
Active Site
Length = 201
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYS-----MTTEYGIIPQIEHYGC 122
+ P G T + CGH+GW + + YS + +PQ H C
Sbjct: 37 VTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLC 87
>pdb|3BIE|A Chain A, X-Ray Structure Of E Coli Alkb Bound To Dsdna Containing
1meaT WITH Mn And 2kg
Length = 202
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYS-----MTTEYGIIPQIEHYGC 122
+ P G T + CGH+GW + + YS + +PQ H C
Sbjct: 38 VTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLC 88
>pdb|3BI3|A Chain A, X-Ray Structure Of Alkb Protein Bound To Dsdna Containing
1meaA WITH Cofactors
Length = 201
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYS-----MTTEYGIIPQIEHYGC 122
+ P G T + CGH+GW + + YS + +PQ H C
Sbjct: 38 VTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLC 88
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 287 KLALTFGLMNTPPGTPIRI-MKNLRVCE 313
K+AL FG MN PPG R+ + L + E
Sbjct: 209 KVALVFGQMNEPPGARARVALTGLTIAE 236
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 287 KLALTFGLMNTPPGTPIRI-MKNLRVCE 313
K+AL FG MN PPG R+ + L + E
Sbjct: 220 KVALVFGQMNEPPGARARVALTGLTIAE 247
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 287 KLALTFGLMNTPPGTPIRI-MKNLRVCE 313
K+AL FG MN PPG R+ + L + E
Sbjct: 214 KVALVFGQMNEPPGARARVALTGLTIAE 241
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 287 KLALTFGLMNTPPGTPIRI-MKNLRVCE 313
K+AL FG MN PPG R+ + L + E
Sbjct: 220 KVALVFGQMNEPPGARARVALTGLTIAE 247
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 287 KLALTFGLMNTPPGTPIRI-MKNLRVCE 313
K+AL FG MN PPG R+ + L + E
Sbjct: 209 KVALVFGQMNEPPGARARVALTGLTIAE 236
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 287 KLALTFGLMNTPPGTPIRI-MKNLRVCE 313
K+AL FG MN PPG R+ + L + E
Sbjct: 247 KVALVFGQMNEPPGARARVALTGLTIAE 274
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 96 WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIR 141
W DEG R Y + EY +I +++ +D++ + ++ + +R
Sbjct: 154 WEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLR 199
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 96 WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIR 141
W DEG R Y + EY +I +++ +D++ + ++ + +R
Sbjct: 154 WEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLR 199
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 96 WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIR 141
W DEG R Y + EY +I +++ +D++ + ++ + +R
Sbjct: 154 WEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLR 199
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 96 WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIR 141
W DEG R Y + EY +I +++ +D++ + ++ + +R
Sbjct: 140 WEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLR 185
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 96 WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIR 141
W DEG R Y + EY +I +++ +D++ + ++ + +R
Sbjct: 140 WEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLR 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,847,225
Number of Sequences: 62578
Number of extensions: 458579
Number of successful extensions: 1110
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1091
Number of HSP's gapped (non-prelim): 24
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)