BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048117
(352 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust.
Identities = 182/352 (51%), Positives = 248/352 (70%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + G R N V + LI MY KCG LE +R VF +E+R VF WSAMI GLA+HG
Sbjct: 387 IHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGC 446
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ F KM E +KPNGVTF + AC H G VDE F+ M + YGI+P+ +HY
Sbjct: 447 GNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYA 506
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VD+L R+G+L++A +FI MPI P+ VWGALLG C++H N++LAE A +L +L+P
Sbjct: 507 CIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPR 566
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G HV+LSNIYA+ +WE+V+ +RK MR G+KK PG SSI +DG++HEF++GD HP
Sbjct: 567 NDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPM 626
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKE-KEKFLYRHSEKLALTFGLMNTPPG 300
+EK++ ++++ +K GY P S VL IEE+E KE+ L HSEKLA+ +GL++T
Sbjct: 627 SEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAP 686
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR++KNLRVC DCH+ KLIS++ +REI+VRDR RFH F+ G CSC D+W
Sbjct: 687 KVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 2/178 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + +S ++ V N+LI Y CG L+ A +VF ++E+ V +W++MI G G
Sbjct: 153 LHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGS 212
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+AL F KM +K + VT +G+L AC + ++ GR+ S E + +
Sbjct: 213 PDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVC-SYIEENRVNVNLTLAN 271
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
M+D+ ++ G +++A M K N V W +L G + ++ + A E + Q D
Sbjct: 272 AMLDMYTKCGSIEDAKRLFDAMEEKDN-VTWTTMLDGYAISEDYEAAREVLNSMPQKD 328
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 108/225 (48%), Gaps = 36/225 (16%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAI-- 58
+V Y ++ N+ + N ++DMY KCG +E A+R+F MEE+ TW+ M+ G AI
Sbjct: 253 QVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISE 312
Query: 59 -----------------------------HGQAKEALTSFNKM-IEIGIKPNGVTFIGLL 88
+G+ EAL F+++ ++ +K N +T + L
Sbjct: 313 DYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTL 372
Query: 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPN 148
AC +G ++ G R+ +S ++GI ++ + S+ G L+++ E ++ K +
Sbjct: 373 SACAQVGALELG-RWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-KRD 430
Query: 149 GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIY 193
VW A++GG +H + A + ++ + + NG V +N++
Sbjct: 431 VFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNG--VTFTNVF 473
Score = 36.2 bits (82), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 3/152 (1%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI-EIGIKPNGVTFIGL 87
LE AR+VF E+ + F W+ +I+ A ++ +F M+ E PN TF L
Sbjct: 78 ASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFL 137
Query: 88 LHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKP 147
+ A + + G+ + M + + + ++ G L A + + K
Sbjct: 138 IKAAAEVSSLSLGQS-LHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEK- 195
Query: 148 NGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
+ V W +++ G + D A E ++++ D
Sbjct: 196 DVVSWNSMINGFVQKGSPDKALELFKKMESED 227
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/351 (51%), Positives = 246/351 (70%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ SG R + + + LIDMY KCG +E A VF + V TWSAMI G AIHGQ
Sbjct: 296 LHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQ 355
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A +A+ F KM + G++P+ V +I LL AC H G V+EGRR+F M + G+ P+IEHYG
Sbjct: 356 AGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYG 415
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL R+G L EA EFI NMPIKP+ V+W ALLG CR+ N+++ + + L + P
Sbjct: 416 CMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPH 475
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G +V LSN+YA W +V+ +R M+ ++K PG S I +DGV+HEFV D++HP+
Sbjct: 476 DSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPK 535
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
A++I M ++ D ++L GY P T+ VLL++EE++KE L+ HSEK+A FGL++T PG
Sbjct: 536 AKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGK 595
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLR+CEDCH++ KLIS++ R+I VRDR RFH FQ GSCSC DYW
Sbjct: 596 PIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 80/144 (55%), Gaps = 2/144 (1%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N +ID Y++ G + AR +F +M +R+V +W+ MI G +++G K+A+ F +M + I+
Sbjct: 212 NVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIR 271
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
PN VT + +L A +G ++ G + + + GI ++D+ S+ G +++A
Sbjct: 272 PNYVTLVSVLPAISRLGSLELG-EWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIH 330
Query: 139 FIRNMPIKPNGVVWGALLGGCRVH 162
+P + N + W A++ G +H
Sbjct: 331 VFERLP-RENVITWSAMINGFAIH 353
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKE--ALTSFNKMI-EIGIKPNGVTFIGL 87
L+ A ++F +M +R F+W+ +I+G + + K A+T F +M+ + ++PN TF +
Sbjct: 75 LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSV 134
Query: 88 LHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKP 147
L AC G + EG++ + + +YG +V + GF+++A I+
Sbjct: 135 LKACAKTGKIQEGKQ-IHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEK 193
Query: 148 NGVV 151
+ VV
Sbjct: 194 DMVV 197
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 177/351 (50%), Positives = 248/351 (70%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ + G ++ V ++IDMY KCG +E AR+ F M+ + V +W+AMI G +HG
Sbjct: 309 IHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGH 368
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A +AL F MI+ G++PN +TF+ +L AC H G EG R+F +M +G+ P +EHYG
Sbjct: 369 AAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYG 428
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAGFLQ+AY+ I+ M +KP+ ++W +LL CR+HKN++LAE + +L +LD
Sbjct: 429 CMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSS 488
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+++LS+IYA+A RW+DV RVR +M+N G+ K PG+S + ++G VH F+ GDE HPQ
Sbjct: 489 NCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQ 548
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
EKI++ +L + GY+ NTS V D++E+EKE L HSEKLA+ FG+MNT PG+
Sbjct: 549 REKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGS 608
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ ++KNLRVC DCH KLIS+IV+RE VVRD RFH F+ G CSCGDYW
Sbjct: 609 TVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/316 (21%), Positives = 134/316 (42%), Gaps = 65/316 (20%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H+ + G++ +I V + LI MY CG LE AR+VF E+ +R + +W++MI+G ++G
Sbjct: 97 QTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNG 156
Query: 61 QAKEALTSFNKMI------EIGIKPNGVTFIGLLHACGHM---GWVDEGRRFF------- 104
A +A++ F ++ + + + + + ++ AC + G + F
Sbjct: 157 NALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDR 216
Query: 105 -----------YSMTTEYG------IIPQI-----EHYGCMVDLLSRAGFLQEAYE---- 138
Y+ E G I QI Y ++ + +++G EA+E
Sbjct: 217 GVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRR 276
Query: 139 FIRNMPIKPNGVVWGALL------GGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNI 192
++N + N + +L G R+ K I + ++ D + G ++ ++
Sbjct: 277 LVKNKVVTFNAITLSTVLLAVSHSGALRIGKCI---HDQVIRMGLEDDVIVGTSII--DM 331
Query: 193 YAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKL 252
Y + R E + M+N V+ W+++ +AG H A K +++ +
Sbjct: 332 YCKCGRVETARKAFDRMKNKNVR---SWTAM---------IAGYGMHGHAAKALELFPAM 379
Query: 253 LDGMKLKGYIPNTSVV 268
+D YI SV+
Sbjct: 380 IDSGVRPNYITFVSVL 395
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 41 MEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG 100
+++ VF+W+++I LA G + EAL +F+ M ++ + P +F + AC + + G
Sbjct: 36 VDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSG 95
Query: 101 RRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCR 160
++ + +G I ++ + S G L++A + +P K N V W +++ G
Sbjct: 96 KQ-THQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP-KRNIVSWTSMIRGYD 153
Query: 161 VHKN 164
++ N
Sbjct: 154 LNGN 157
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 384 bits (985), Expect = e-106, Method: Compositional matrix adjust.
Identities = 176/352 (50%), Positives = 245/352 (69%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y N++ R + + LIDMY KCG +E A VF +++++V W+A+I G A HG
Sbjct: 269 IHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGH 328
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA++ F +M ++GIKPN +TF +L AC + G V+EG+ FYSM +Y + P IEHYG
Sbjct: 329 GREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYG 388
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDLL RAG L EA FI+ MP+KPN V+WGALL CR+HKNI+L EE L +DP
Sbjct: 389 CIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPY 448
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G +V +NI+A ++W+ A R+LM+ GV K PG S+I+++G HEF+AGD +HP+
Sbjct: 449 HGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPE 508
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLD-IEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
EKI W + ++ GY+P +LLD +++ E+E +++HSEKLA+T+GL+ T PG
Sbjct: 509 IEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPG 568
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IRIMKNLRVC+DCH KLIS+I R+IV+RDR RFH F+ G CSCGDYW
Sbjct: 569 TIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 75/145 (51%), Gaps = 4/145 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N++I YVK G ++ A +F +M E+ +W+ MI G KEAL F++M ++
Sbjct: 185 NSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVE 244
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC-MVDLLSRAGFLQEAY 137
P+ V+ L AC +G +++G+ + + + GC ++D+ ++ G ++EA
Sbjct: 245 PDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSV--LGCVLIDMYAKCGEMEEAL 302
Query: 138 EFIRNMPIKPNGVVWGALLGGCRVH 162
E +N+ K + W AL+ G H
Sbjct: 303 EVFKNIK-KKSVQAWTALISGYAYH 326
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 87/185 (47%), Gaps = 5/185 (2%)
Query: 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90
L A+ VF + F W+ MI+G + + + +L + +M+ N TF LL A
Sbjct: 65 LPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKA 124
Query: 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGV 150
C ++ +E + ++ T+ G + +++ + G + A+ +P +P+ V
Sbjct: 125 CSNLSAFEETTQ-IHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIP-EPDDV 182
Query: 151 VWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMR 210
W +++ G +D+A R++ + + ++ + ++S Y +A+ ++ ++ M+
Sbjct: 183 SWNSVIKGYVKAGKMDIALTLFRKMAEKNAIS--WTTMISG-YVQADMNKEALQLFHEMQ 239
Query: 211 NLGVK 215
N V+
Sbjct: 240 NSDVE 244
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust.
Identities = 178/352 (50%), Positives = 244/352 (69%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + S R N++VC LIDMY KCG LE A VF + + + W+AMI G A+HG
Sbjct: 281 IHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGY 340
Query: 62 AKEALTSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+++AL FN+M I G++P +TFIG L AC H G V+EG R F SM EYGI P+IEHY
Sbjct: 341 SQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHY 400
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GC+V LL RAG L+ AYE I+NM + + V+W ++LG C++H + L +E + L L+
Sbjct: 401 GCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNI 460
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N+G +V+LSNIYA +E VA+VR LM+ G+ K PG S+I ++ VHEF AGD H
Sbjct: 461 KNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHS 520
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++++I+ M K+ + +K GY+PNT+ VL D+EE EKE+ L HSE+LA+ +GL++T PG
Sbjct: 521 KSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPG 580
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+P++I KNLRVC DCH KLIS+I R+IV+RDRNRFH F GSCSCGD+W
Sbjct: 581 SPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 78/151 (51%), Gaps = 3/151 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ +I Y K G +E AR +F M ER + +W+ MI G A HG +AL F K+
Sbjct: 190 RSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKL 249
Query: 73 IEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
+ G KP+ +T + L AC +G ++ G R+ + I ++ ++D+ S+ G
Sbjct: 250 LAEGKPKPDEITVVAALSACSQIGALETG-RWIHVFVKSSRIRLNVKVCTGLIDMYSKCG 308
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
L+EA + P K + V W A++ G +H
Sbjct: 309 SLEEAVLVFNDTPRK-DIVAWNAMIAGYAMH 338
Score = 36.6 bits (83), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 25 YVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTF 84
Y G + + +F + + +F ++A I +I+G +A + +++ I PN TF
Sbjct: 74 YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTF 133
Query: 85 IGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC--MVDLLSRAGFLQEAYEFIRN 142
LL +C + + ++ ++G+ I+ Y +VD+ ++ G + A +
Sbjct: 134 SSLLKSCS-----TKSGKLIHTHVLKFGL--GIDPYVATGLVDVYAKGGDVVSAQKVFDR 186
Query: 143 MP 144
MP
Sbjct: 187 MP 188
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 374 bits (959), Expect = e-103, Method: Compositional matrix adjust.
Identities = 173/357 (48%), Positives = 242/357 (67%), Gaps = 5/357 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y + N+ + N LIDMY KCGCLE AR VF M+ R V +W+AMI G
Sbjct: 330 KIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSG 389
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +A+ F+K+ + G+ P+ + F+ L AC H G ++EGR F MT Y I P++EH
Sbjct: 390 RGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHL 449
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG ++EAY FI++M ++PN VWGALLG CRVH + D+ A+ +L QL P
Sbjct: 450 ACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAP 509
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+GY+V+LSNIYA+A RWE+V +R +M++ G+KK PG S++ V+ ++H F+ GD +HP
Sbjct: 510 EQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHP 569
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP-- 298
Q+++I++ + L+ MK GY+P++ L D+EE++KE L HSEKLA+ F LMNT
Sbjct: 570 QSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEE 629
Query: 299 ---PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI KNLR+C DCH A KLIS+I +REI++RD NRFH F+ G CSCGDYW
Sbjct: 630 EEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 115/283 (40%), Gaps = 18/283 (6%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH R N + L+ Y + AR+VF E+ ER V + MI+ +G
Sbjct: 61 VHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGF 120
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
E + F M ++P+ TF +L AC G + GR+ S T+ G+ +
Sbjct: 121 YGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGS-ATKVGLSSTLFVGN 179
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+V + + GFL EA + M + + V W +L+ G ++ D A E R+++ +
Sbjct: 180 GLVSMYGKCGFLSEARLVLDEMS-RRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKIS 238
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGW---------SSITVDGV-VHE 231
++ + E+V V+ + +G K W +++ V+ V ++
Sbjct: 239 HDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYS 298
Query: 232 FVAGDETHPQAEKIFQMWEKLLD------GMKLKGYIPNTSVV 268
+ D P A I + D G K+ GYI ++
Sbjct: 299 RMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLI 341
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 10/227 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G + V N L+ MY KCG L AR V EM R V +W++++ G A +
Sbjct: 161 KIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQ 220
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ +AL +M + I + T LL A + E + M + G + +
Sbjct: 221 RFDDALEVCREMESVKISHDAGTMASLLPAVSNT--TTENVMYVKDMFFKMG-KKSLVSW 277
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
M+ + + EA E M +P+ V ++L C + L ++ +++
Sbjct: 278 NVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIER 337
Query: 178 LDPLNN-GYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSI 223
+ N L ++YA+ E + R + N+ + W+++
Sbjct: 338 KKLIPNLLLENALIDMYAKCGCLE---KARDVFENMKSRDVVSWTAM 381
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 374 bits (959), Expect = e-103, Method: Compositional matrix adjust.
Identities = 174/353 (49%), Positives = 250/353 (70%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH Y + G RN+ N L+D+Y +CG +E A+ +F EM ++ +W+++I GLA++G
Sbjct: 243 RVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNG 302
Query: 61 QAKEALTSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
KEA+ F M G+ P +TF+G+L+AC H G V EG +F M EY I P+IEH
Sbjct: 303 FGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEH 362
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
+GCMVDLL+RAG +++AYE+I++MP++PN V+W LLG C VH + DLAE A Q+ QL+
Sbjct: 363 FGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLE 422
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P ++G +V+LSN+YA +RW DV ++RK M GVKK PG S + V VHEF+ GD++H
Sbjct: 423 PNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSH 482
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
PQ++ I+ +++ ++ +GY+P S V +D+EE+EKE + HSEK+A+ F L++TP
Sbjct: 483 PQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPE 542
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+PI ++KNLRVC DCH A KL+S++ NREIVVRDR+RFH F+ GSCSC DYW
Sbjct: 543 RSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 2/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +SGF I V N+L+ +Y CG + A +VF +M E+ + W+++I G A +G+
Sbjct: 143 IHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGK 202
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL + +M GIKP+G T + LL AC +G + G+R M + G+ +
Sbjct: 203 PEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM-IKVGLTRNLHSSN 261
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++DL +R G ++EA M + N V W +L+ G V+
Sbjct: 262 VLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVGLAVN 301
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 4/127 (3%)
Query: 34 ARRVFIEMEER-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG-IKPNGVTFIGLLHAC 91
A +VF ++E+ VF W+ +I+G A G + A + + +M G ++P+ T+ L+ A
Sbjct: 72 AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAV 131
Query: 92 GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV 151
M V G +S+ G I ++ L + G + AY+ MP K + V
Sbjct: 132 TTMADVRLGET-IHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEK-DLVA 189
Query: 152 WGALLGG 158
W +++ G
Sbjct: 190 WNSVING 196
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 367 bits (942), Expect = e-101, Method: Compositional matrix adjust.
Identities = 168/352 (47%), Positives = 246/352 (69%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+Y+ + F + ++V LIDM+ KCG L+ A +F +M + WSAMI A HG+
Sbjct: 252 IHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGK 311
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A++++ F +M ++P+ +TF+GLL+AC H G V+EGR++F M +++GI+P I+HYG
Sbjct: 312 AEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYG 371
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
MVDLLSRAG L++AYEFI +PI P ++W LL C H N+DLAE+ S ++ +LD
Sbjct: 372 SMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDS 431
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G +V+LSN+YA ++WE V +RK+M++ K PG SSI V+ VVHEF +GD
Sbjct: 432 HGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSA 491
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVL-LDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
K+ + ++++ +KL GY+P+TS+V+ ++ ++EKE L HSEKLA+TFGL+NTPPG
Sbjct: 492 TTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPG 551
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IR++KNLRVC DCH A KLIS I R++V+RD RFH F+ G CSCGD+W
Sbjct: 552 TTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S + G N+ VC TLI+MY +C ++ AR VF + E V ++AMI G A
Sbjct: 150 QLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRN 209
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EAL+ F +M +KPN +T + +L +C +G +D G ++ + ++ ++
Sbjct: 210 RPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG-KWIHKYAKKHSFCKYVKVN 268
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
++D+ ++ G L +A M K + W A++
Sbjct: 269 TALIDMFAKCGSLDDAVSIFEKMRYK-DTQAWSAMI 303
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 100/253 (39%), Gaps = 46/253 (18%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH 93
AR +F M E + +++M +G + E + F +++E GI P+ TF LL AC
Sbjct: 82 ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141
Query: 94 MGWVDEGRRF------------------FYSMTTEYGII------------PQIEHYGCM 123
++EGR+ +M TE + P + Y M
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAM 201
Query: 124 VDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+ +R EA R M +KPN + ++L C + ++DL + + +
Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSF 261
Query: 181 LNN-GYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
+ L +++A+ +D + + MR K T WS++ V H
Sbjct: 262 CKYVKVNTALIDMFAKCGSLDDAVSIFEKMR---YKDTQAWSAMIV---------AYANH 309
Query: 240 PQAEKIFQMWEKL 252
+AEK M+E++
Sbjct: 310 GKAEKSMLMFERM 322
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 367 bits (941), Expect = e-101, Method: Compositional matrix adjust.
Identities = 166/345 (48%), Positives = 233/345 (67%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
+ G+ V N L+ MY KCG +E A +F EM + + +W+ MI G + HG + AL
Sbjct: 437 KGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALR 496
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
F M G+KP+ T + +L AC H G VD+GR++FY+MT +YG++P +HY CMVDLL
Sbjct: 497 FFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLL 556
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV 187
RAG L++A+ ++NMP +P+ +WG LLG RVH N +LAE A+ ++ ++P N+G +V
Sbjct: 557 GRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYV 616
Query: 188 VLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQ 247
+LSN+YA + RW DV ++R MR+ GVKK PG+S I + H F GDE HP+ ++IF
Sbjct: 617 LLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFA 676
Query: 248 MWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMK 307
E+L MK GY+ TSVVL D+EE+EKE+ + HSE+LA+ +G+M G PIR++K
Sbjct: 677 FLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIK 736
Query: 308 NLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
NLRVCEDCH A K ++ I R I++RD NRFH F+ GSCSCGDYW
Sbjct: 737 NLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 108/278 (38%), Gaps = 53/278 (19%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ NT+I Y +CG + A+ +F +M +R +W+AMI G + G + EAL F +M
Sbjct: 341 RNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQM 400
Query: 73 IEIGIKPNGVTFIGLLHACGHM-----------------------------------GWV 97
G + N +F L C + G +
Sbjct: 401 EREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSI 460
Query: 98 DEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGA 154
+E F M + I + M+ SR GF + A F +M +KP+ A
Sbjct: 461 EEANDLFKEMAGK-----DIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVA 515
Query: 155 LLGGCRVHKNIDLAEEASRQLDQ---LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRN 211
+L C +D + + Q + P N+ ++ + ++ A ED LM+N
Sbjct: 516 VLSACSHTGLVDKGRQYFYTMTQDYGVMP-NSQHYACMVDLLGRAGLLED---AHNLMKN 571
Query: 212 LGVKKTPG-WSSITVDGVVHEFVAGDETHPQAEKIFQM 248
+ + W ++ VH ET A+KIF M
Sbjct: 572 MPFEPDAAIWGTLLGASRVHGNTELAET--AADKIFAM 607
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 16/149 (10%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ NT+I Y + G ++ AR++F E + VFTW+AM+ G + +EA F+KM
Sbjct: 248 RDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKM 307
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE-YGIIP--QIEHYGCMVDLLSR 129
E N V++ +L G+V +G R M E + ++P + + M+ ++
Sbjct: 308 PE----RNEVSWNAML-----AGYV-QGERM--EMAKELFDVMPCRNVSTWNTMITGYAQ 355
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
G + EA MP K + V W A++ G
Sbjct: 356 CGKISEAKNLFDKMP-KRDPVSWAAMIAG 383
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 88/189 (46%), Gaps = 15/189 (7%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ NT++ Y + GC++ AR VF M E+ +W+A++ + + +EA F
Sbjct: 155 RDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSR 214
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ V++ LL + E R+FF SM + + + ++ +++G
Sbjct: 215 ENWAL----VSWNCLLGGFVKKKKIVEARQFFDSMN-----VRDVVSWNTIITGYAQSGK 265
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN-GYHVVLSN 191
+ EA + P++ + W A++ G ++ + EEA D++ N ++ +L+
Sbjct: 266 IDEARQLFDESPVQ-DVFTWTAMVSGYIQNR---MVEEARELFDKMPERNEVSWNAMLAG 321
Query: 192 IYAEAERWE 200
Y + ER E
Sbjct: 322 -YVQGERME 329
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 14/171 (8%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ N +I YV+ L AR +F M ER V +W+ M+ G A +G +A + F++M
Sbjct: 124 RDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRM 183
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E N V++ LL A ++E F S + ++ + C++ +
Sbjct: 184 PE----KNDVSWNALLSAYVQNSKMEEACMLFKSREN-WALVS----WNCLLGGFVKKKK 234
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183
+ EA +F +M ++ + V W ++ G ID A RQL P+ +
Sbjct: 235 IVEARQFFDSMNVR-DVVSWNTIITGYAQSGKIDEA----RQLFDESPVQD 280
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 112/249 (44%), Gaps = 29/249 (11%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH---GQAKEALTSFNKMIEI 75
N +I Y++ G E AR++F EM ER + +W+ MI+G + G+A+E + EI
Sbjct: 99 NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARE-------LFEI 151
Query: 76 GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE 135
+ + ++ +L G VD+ R F M + + + ++ + ++E
Sbjct: 152 MPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDV-----SWNALLSAYVQNSKMEE 206
Query: 136 AYEFIRNMPIKPNG--VVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIY 193
A ++ + N V W LLGG K I A + ++ D ++ ++ +++ Y
Sbjct: 207 ACMLFKS---RENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVS--WNTIITG-Y 260
Query: 194 AEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLL 253
A++ + + R+L V+ W+++ + + V +E +K+ + E
Sbjct: 261 AQSGK---IDEARQLFDESPVQDVFTWTAMVSGYIQNRMV--EEARELFDKMPERNEVSW 315
Query: 254 DGMKLKGYI 262
+ M L GY+
Sbjct: 316 NAM-LAGYV 323
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 168/357 (47%), Positives = 243/357 (68%), Gaps = 6/357 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + +G + + N LI+MY KCG L+ R VF +M R V +WS+MI L++HG+
Sbjct: 366 VHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGE 425
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A +AL+ F +M + ++PN VTF+G+L+ C H G V+EG++ F SMT EY I P++EHYG
Sbjct: 426 ASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYG 485
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDL RA L+EA E I +MP+ N V+WG+L+ CR+H ++L + A++++ +L+P
Sbjct: 486 CMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPD 545
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
++G V++SNIYA +RWEDV +R++M V K G S I +G HEF+ GD+ H Q
Sbjct: 546 HDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQ 605
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+ +I+ ++++ +KL GY+P+ VL+D+EE+EK+ + HSEKLAL FGLMN
Sbjct: 606 SNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEE 665
Query: 302 P------IRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVCEDCH FKL+S++ REI+VRDR RFHC++ G CSC DYW
Sbjct: 666 EKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 77/150 (51%), Gaps = 2/150 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ V ++ Y KCG L+ A+ +F + E++ + W+ MI +EAL F +M
Sbjct: 276 RNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEM 335
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
GIKP+ V+ ++ AC ++G +D+ ++ +S G+ ++ ++++ ++ G
Sbjct: 336 CCSGIKPDVVSMFSVISACANLGILDKA-KWVHSCIHVNGLESELSINNALINMYAKCGG 394
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
L + MP + N V W +++ +H
Sbjct: 395 LDATRDVFEKMP-RRNVVSWSSMINALSMH 423
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 5/195 (2%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
+DMY CG + AR VF EM R V TW+ MI+ G EA F +M + + P+
Sbjct: 152 FMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPD 211
Query: 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFI 140
+ ++ ACG G + R Y E + +V + + AG + A EF
Sbjct: 212 EMILCNIVSACGRTGNMRYNRA-IYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFF 270
Query: 141 RNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWE 200
R M ++ N V A++ G + ++A DQ + + + + Y E++ +
Sbjct: 271 RKMSVR-NLFVSTAMVSG---YSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQ 326
Query: 201 DVARVRKLMRNLGVK 215
+ RV + M G+K
Sbjct: 327 EALRVFEEMCCSGIK 341
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 70/170 (41%), Gaps = 13/170 (7%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTV----FTWSAMIQGLAIHGQAKEALTS 68
R++ NT+I+ Y + G ++ A ++F EM++ V ++ G +
Sbjct: 175 RDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAI 234
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
+ +IE ++ + L+ G +D R FF M+ + MV S
Sbjct: 235 YEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVST-----AMVSGYS 289
Query: 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ G L +A + I + K + V W ++ + D +EA R +++
Sbjct: 290 KCGRLDDA-QVIFDQTEKKDLVCWTTMISA---YVESDYPQEALRVFEEM 335
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 363 bits (932), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 171/342 (50%), Positives = 230/342 (67%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
F N+ + N LIDMY KCG + VF EM+E+ + +A I GLA +G K + F
Sbjct: 344 FLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFG 403
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
+ ++GI P+G TF+GLL C H G + +G RFF +++ Y + +EHYGCMVDL RA
Sbjct: 404 QTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRA 463
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190
G L +AY I +MP++PN +VWGALL GCR+ K+ LAE ++L L+P N G +V LS
Sbjct: 464 GMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLS 523
Query: 191 NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWE 250
NIY+ RW++ A VR +M G+KK PG+S I ++G VHEF+A D++HP ++KI+ E
Sbjct: 524 NIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLE 583
Query: 251 KLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLR 310
L + M+L G++P T V D+EE+EKE+ L HSEKLA+ GL++T G IR++KNLR
Sbjct: 584 DLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLR 643
Query: 311 VCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
VC DCH KLIS+I REIVVRD NRFHCF GSCSC DYW
Sbjct: 644 VCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 92/175 (52%), Gaps = 2/175 (1%)
Query: 4 EYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAK 63
+Y + ++N V TL+++Y KCG +E AR VF M E+ + TWS MIQG A + K
Sbjct: 236 KYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPK 295
Query: 64 EALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCM 123
E + F +M++ +KP+ + +G L +C +G +D G + S+ + + + +
Sbjct: 296 EGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLG-EWGISLIDRHEFLTNLFMANAL 354
Query: 124 VDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+D+ ++ G + +E + M K + V+ A + G + ++ L+ Q ++L
Sbjct: 355 IDMYAKCGAMARGFEVFKEMKEK-DIVIMNAAISGLAKNGHVKLSFAVFGQTEKL 408
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 84/160 (52%), Gaps = 8/160 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + GF ++ +L+ +Y G L A ++F E+ +R+V TW+A+ G G+
Sbjct: 133 LHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGR 192
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR---RFFYSMTTEYGIIPQIE 118
+EA+ F KM+E+G+KP+ + +L AC H+G +D G ++ M + +
Sbjct: 193 HREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTT 252
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V+L ++ G +++A +M ++ + V W ++ G
Sbjct: 253 ----LVNLYAKCGKMEKARSVFDSM-VEKDIVTWSTMIQG 287
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 360 bits (925), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 168/352 (47%), Positives = 237/352 (67%), Gaps = 1/352 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ ++ ++ V + L+DMY KCGCL+ +R+VF ++ ++ V TW+ +I +HG
Sbjct: 539 IHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGN 598
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EA+ M+ G+KPN VTFI + AC H G VDEG R FY M +YG+ P +HY
Sbjct: 599 GQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYA 658
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGV-VWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL RAG ++EAY+ + MP N W +LLG R+H N+++ E A++ L QL+P
Sbjct: 659 CVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEP 718
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++V+L+NIY+ A W+ VR+ M+ GV+K PG S I VH+FVAGD +HP
Sbjct: 719 NVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHP 778
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
Q+EK+ E L + M+ +GY+P+TS VL ++EE EKE L HSEKLA+ FG++NT PG
Sbjct: 779 QSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPG 838
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IR+ KNLRVC DCH A K IS+IV+REI++RD RFH F+ G+CSCGDYW
Sbjct: 839 TIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 13/174 (7%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G R+ V NTL+DMY + G ++ A R+F +ME+R + TW+ MI G
Sbjct: 427 IHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEH 486
Query: 62 AKEALTSFNKM-----------IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE 110
++AL +KM + +KPN +T + +L +C + + +G+ ++ +
Sbjct: 487 HEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKE-IHAYAIK 545
Query: 111 YGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKN 164
+ + +VD+ ++ G LQ + + +P K N + W ++ +H N
Sbjct: 546 NNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK-NVITWNVIIMAYGMHGN 598
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 4/159 (2%)
Query: 2 VHEYSNQSG-FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+H Y+ ++G N V + L+DMY C + RRVF M +R + W+AMI G + +
Sbjct: 324 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNE 383
Query: 61 QAKEALTSFNKMIE-IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
KEAL F M E G+ N T G++ AC G + + + G+
Sbjct: 384 HDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR-KEAIHGFVVKRGLDRDRFV 442
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ SR G + A M + + V W ++ G
Sbjct: 443 QNTLMDMYSRLGKIDIAMRIFGKMEDR-DLVTWNTMITG 480
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 1 RVHEYSNQSGFR-RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIH 59
++H + + G+ ++ V NTL+++Y KCG +VF + ER +W+++I L
Sbjct: 118 QIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSF 177
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM 94
+ + AL +F M++ ++P+ T + ++ AC ++
Sbjct: 178 EKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 212
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y + G N + NTL+ MY K G L ++ + R + TW+ ++ L +
Sbjct: 223 QVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNE 281
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF 103
Q EAL +M+ G++P+ T +L AC H+ + G+
Sbjct: 282 QLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324
Score = 40.0 bits (92), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 67/146 (45%), Gaps = 4/146 (2%)
Query: 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88
+ GA +FI + R+ W +++ +EA+ ++ MI +GIKP+ F LL
Sbjct: 46 SAVSGAPSIFIS-QSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALL 104
Query: 89 HACGHMGWVDEGRRFFYSMTTEYGI-IPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKP 147
A + ++ G++ ++ ++G + + +V+L + G Y+ + +
Sbjct: 105 KAVADLQDMELGKQ-IHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISER- 162
Query: 148 NGVVWGALLGGCRVHKNIDLAEEASR 173
N V W +L+ + ++A EA R
Sbjct: 163 NQVSWNSLISSLCSFEKWEMALEAFR 188
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 360 bits (924), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 174/351 (49%), Positives = 232/351 (66%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +S +N+ V L+DMY KCG + AR +F M ER V TW+AMI G HG
Sbjct: 460 IHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGF 519
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K AL F +M + IKPNGVTF+ ++ AC H G V+ G + FY M Y I ++HYG
Sbjct: 520 GKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYG 579
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
MVDLL RAG L EA++FI MP+KP V+GA+LG C++HKN++ AE+A+ +L +L+P
Sbjct: 580 AMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPD 639
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ GYHV+L+NIY A WE V +VR M G++KTPG S + + VH F +G HP
Sbjct: 640 DGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPD 699
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++KI+ EKL+ +K GY+P+T++V L +E KE+ L HSEKLA++FGL+NT GT
Sbjct: 700 SKKIYAFLEKLICHIKEAGYVPDTNLV-LGVENDVKEQLLSTHSEKLAISFGLLNTTAGT 758
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I + KNLRVC DCH A K IS + REIVVRD RFH F+ G+CSCGDYW
Sbjct: 759 TIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y+ +SGF + + L+DMY KCG LE AR++F M ER V +W++MI +
Sbjct: 258 IHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNEN 317
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA+ F KM++ G+KP V+ +G LHAC +G ++ G RF + ++ E G+ +
Sbjct: 318 PKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERG-RFIHKLSVELGLDRNVSVVN 376
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++ + + + A + + V W A++ G
Sbjct: 377 SLISMYCKCKEVDTAASMFGKLQSR-TLVSWNAMILG 412
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 41/195 (21%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H+ S + G RN+ V N+LI MY KC ++ A +F +++ RT+ +W+AMI G A +G+
Sbjct: 359 IHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGR 418
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACG------HMGWV---------DEG------ 100
+AL F++M +KP+ T++ ++ A H W+ D+
Sbjct: 419 PIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTA 478
Query: 101 -------------RRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM---P 144
R + M +E + + M+D GF + A E M
Sbjct: 479 LVDMYAKCGAIMIARLIFDMMSE----RHVTTWNAMIDGYGTHGFGKAALELFEEMQKGT 534
Query: 145 IKPNGVVWGALLGGC 159
IKPNGV + +++ C
Sbjct: 535 IKPNGVTFLSVISAC 549
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 80/156 (51%), Gaps = 4/156 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +SGF ++ L +MY KC + AR+VF M ER + +W+ ++ G + +G
Sbjct: 157 IHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGM 216
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHY 120
A+ AL M E +KP+ +T + +L A + + G+ Y+M + + + I
Sbjct: 217 ARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNIS-- 274
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
+VD+ ++ G L+ A + M ++ N V W +++
Sbjct: 275 TALVDMYAKCGSLETARQLFDGM-LERNVVSWNSMI 309
Score = 39.7 bits (91), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 65/311 (20%), Positives = 123/311 (39%), Gaps = 58/311 (18%)
Query: 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80
L+ ++ + G ++ A RVF ++ + + M++G A +AL F +M ++P
Sbjct: 75 LVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPV 134
Query: 81 GVTFIGLLHACGHMGWVDEGRRF------------FYSMT---TEYGIIPQIEH------ 119
F LL CG + G+ ++MT Y Q+
Sbjct: 135 VYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFD 194
Query: 120 ---------YGCMVDLLSRAGFLQEAYEFIRNM---PIKPNGVVWGALLGGCRVHKNIDL 167
+ +V S+ G + A E +++M +KP+ + ++L + I +
Sbjct: 195 RMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISV 254
Query: 168 AEE--ASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITV 225
+E D L N L ++YA+ E R+L + + W+S+ +
Sbjct: 255 GKEIHGYAMRSGFDSLVN-ISTALVDMYAKCGSLET---ARQLFDGMLERNVVSWNSM-I 309
Query: 226 DGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVL------LDIEEKEKEK 279
D V +E +A IFQ K+LD +G P V+ D+ + E+ +
Sbjct: 310 DAYVQ-----NENPKEAMLIFQ---KMLD----EGVKPTDVSVMGALHACADLGDLERGR 357
Query: 280 FLYRHSEKLAL 290
F+++ S +L L
Sbjct: 358 FIHKLSVELGL 368
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 359 bits (922), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 170/351 (48%), Positives = 224/351 (63%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH+ + F +I V LI MY KCG + ARR+F M ++ TW+ MI G +HGQ
Sbjct: 442 VHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQ 501
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+EAL F +M+ GI P VTF+ +L+AC H G V EG F SM YG P ++HY
Sbjct: 502 GQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYA 561
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVD+L RAG LQ A +FI M I+P VW LLG CR+HK+ +LA S +L +LDP
Sbjct: 562 CMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPD 621
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GYHV+LSNI++ + A VR+ + + K PG++ I + H F +GD++HPQ
Sbjct: 622 NVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQ 681
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I++ EKL M+ GY P T + L D+EE+E+E + HSE+LA+ FGL+ T PGT
Sbjct: 682 VKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGT 741
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC DCH KLIS+I R IVVRD NRFH F+ G CSCGDYW
Sbjct: 742 EIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 79/161 (49%), Gaps = 2/161 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y +S F + V L +Y K +E AR++F E E+++ +W+AMI G +G
Sbjct: 341 IHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGL 400
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++A++ F +M + PN VT +L AC +G + G ++ + + I
Sbjct: 401 TEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLG-KWVHDLVRSTDFESSIYVST 459
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++ + ++ G + EA ++ K N V W ++ G +H
Sbjct: 460 ALIGMYAKCGSIAEARRLF-DLMTKKNEVTWNTMISGYGLH 499
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/286 (18%), Positives = 115/286 (40%), Gaps = 43/286 (15%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + ++G + V I +Y KCG ++ +F E + + ++AMI G +G
Sbjct: 242 QIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNG 301
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM-------GWVDEGRRFFY-----SMT 108
+ + +L+ F +++ G + T + L+ GH+ G+ + + ++T
Sbjct: 302 ETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALT 361
Query: 109 TEYGIIPQIE---------------HYGCMVDLLSRAGFLQEAYEFIRNMP---IKPNGV 150
T Y + +IE + M+ ++ G ++A R M PN V
Sbjct: 362 TVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPV 421
Query: 151 VWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGY-HVVLSNIYAEAERWEDVARVRKLM 209
+L C + L + + D ++ Y L +YA + +A R+L
Sbjct: 422 TITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYA---KCGSIAEARRLF 478
Query: 210 RNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDG 255
+ K W+++ ++G H Q ++ ++ ++L+
Sbjct: 479 DLMTKKNEVTWNTM---------ISGYGLHGQGQEALNIFYEMLNS 515
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 76/175 (43%), Gaps = 3/175 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + G + + + ++ MY K +E AR+VF M E+ W+ MI G +
Sbjct: 141 IHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEM 200
Query: 62 AKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
E++ F +I E + + T + +L A + + G + +S+ T+ G
Sbjct: 201 YVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQ-IHSLATKTGCYSHDYVL 259
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
+ L S+ G ++ R KP+ V + A++ G + +L+ ++L
Sbjct: 260 TGFISLYSKCGKIKMGSALFREFR-KPDIVAYNAMIHGYTSNGETELSLSLFKEL 313
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 81/183 (44%), Gaps = 13/183 (7%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GFR +I + L G + AR +F+ ++ VF ++ +++G +++ +L+ F
Sbjct: 47 GFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVF 106
Query: 70 NKMIE-IGIKPNGVTFIGLLHACGHMGWVDE-GRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
+ + +KPN T+ + A G+ D+ R + G ++ +V +
Sbjct: 107 AHLRKSTDLKPNSSTYAFAISAAS--GFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMY 164
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNI--------DLAEEASRQLDQLD 179
+ +++A + MP K + ++W ++ G R ++ DL E+ +LD
Sbjct: 165 FKFWRVEDARKVFDRMPEK-DTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTT 223
Query: 180 PLN 182
L+
Sbjct: 224 LLD 226
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 359 bits (921), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 165/351 (47%), Positives = 245/351 (69%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H Y ++ + +R+ TL+D+Y KCG +E A VF MEE+ V+TWS+ + GLA++G
Sbjct: 262 AHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGF 321
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
++ L F+ M + G+ PN VTF+ +L C +G+VDEG+R F SM E+GI PQ+EHYG
Sbjct: 322 GEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYG 381
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VDL +RAG L++A I+ MP+KP+ VW +LL R++KN++L AS+++ +L+
Sbjct: 382 CLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETA 441
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N+G +V+LSNIYA++ W++V+ VR+ M++ GV+K PG S + V+G VHEF GD++HP+
Sbjct: 442 NHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPK 501
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I +W+ + ++L GY +T+ V+ DI+E+EKE L HSEK A+ FG+M+
Sbjct: 502 YTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDV 561
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI+KNLRVC DCH +IS+I NREI+VRDRNRFH F+ G CSC +W
Sbjct: 562 PIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 102/234 (43%), Gaps = 46/234 (19%)
Query: 17 VCNT-LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEI 75
VC T ++ +CG + AR++F M ER W+AMI G A G+++EAL F+ M
Sbjct: 175 VCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLE 234
Query: 76 GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE 135
G+K NGV I +L AC +G +D+G R+ +S I + +VDL ++ G +++
Sbjct: 235 GVKVNGVAMISVLSACTQLGALDQG-RWAHSYIERNKIKITVRLATTLVDLYAKCGDMEK 293
Query: 136 AYEFIRNMP----------------------------------IKPNGVVWGALLGGCRV 161
A E M + PN V + ++L GC V
Sbjct: 294 AMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSV 353
Query: 162 HKNIDLAEEASRQLDQL------DPLNNGYHVVLSNIYAEAERWEDVARVRKLM 209
+ +E R D + +P Y L ++YA A R ED + + M
Sbjct: 354 ---VGFVDEGQRHFDSMRNEFGIEPQLEHYG-CLVDLYARAGRLEDAVSIIQQM 403
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 358 bits (920), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 163/351 (46%), Positives = 237/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H ++ + N+ V + LIDMY KCG + ++ VF M + + W++++ G ++HG+
Sbjct: 410 THGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGK 469
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
AKE ++ F ++ +KP+ ++F LL ACG +G DEG ++F M+ EYGI P++EHY
Sbjct: 470 AKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYS 529
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMV+LL RAG LQEAY+ I+ MP +P+ VWGALL CR+ N+DLAE A+ +L L+P
Sbjct: 530 CMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPE 589
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V+LSNIYA W +V +R M +LG+KK PG S I V V+ +AGD++HPQ
Sbjct: 590 NPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQ 649
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
++I + +++ M+ G+ PN L D+EE+E+E+ L+ HSEKLA+ FGL+NTP GT
Sbjct: 650 IDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGT 709
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P++++KNLR+C DCHA K IS REI +RD NRFH F+ G CSCGD+W
Sbjct: 710 PLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 6/150 (4%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERT----VFTWSAMIQGLAIHGQAKEALTSFNKM 72
VCN I + G ++ A +F +E+T V +W+++I G A +G+ EAL F +M
Sbjct: 320 VCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREM 379
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
G+KPN VT +L ACG++ + GR + ++ + ++D+ ++ G
Sbjct: 380 QVAGVKPNHVTIPSMLPACGNIAALGHGRS-THGFAVRVHLLDNVHVGSALIDMYAKCGR 438
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ + MP K N V W +L+ G +H
Sbjct: 439 INLSQIVFNMMPTK-NLVCWNSLMNGFSMH 467
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 77/184 (41%), Gaps = 37/184 (20%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEME----ERTVFTWSAMIQGLAIHGQAKEALTS 68
+++ C+ L+ Y + GCLE R+ EME E + +W+ ++ G G KEA+
Sbjct: 180 KDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVM 239
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE------------------ 110
F K+ +G P+ VT +L + G ++ GR + +
Sbjct: 240 FQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGK 299
Query: 111 ----YGIIPQIEHYGCM--------VDLLSRAGFLQEA---YEFIRNMPIKPNGVVWGAL 155
YGII + M + LSR G + +A +E + ++ N V W ++
Sbjct: 300 SGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSI 359
Query: 156 LGGC 159
+ GC
Sbjct: 360 IAGC 363
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S SG + V ++ MY++CG + AR+VF M ++ V T SA++ A G
Sbjct: 137 QIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKG 196
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF 104
+E + ++M GI+ N V++ G+L G+ E F
Sbjct: 197 CLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMF 240
Score = 38.5 bits (88), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 64/156 (41%), Gaps = 2/156 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H +SG + + + LI Y C A V + + T++++S++I L
Sbjct: 36 QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+++ F++M G+ P+ L C + G++ + ++ G+
Sbjct: 96 LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQ-IHCVSCVSGLDMDAFVQ 154
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
G M + R G + +A + M K + V ALL
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDK-DVVTCSALL 189
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920
OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 357 bits (917), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 163/339 (48%), Positives = 242/339 (71%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
NI V +L+DMYVKCGCL+ A +F +ME+R T+SAMI GLA+HG+ + AL F+KMI
Sbjct: 268 NIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMI 327
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
+ G++P+ V ++ +L+AC H G V EGRR F M E + P EHYGC+VDLL RAG L
Sbjct: 328 KEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLL 387
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIY 193
+EA E I+++PI+ N V+W L CRV +NI+L + A+++L +L N G ++++SN+Y
Sbjct: 388 EEALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLY 447
Query: 194 AEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLL 253
++ + W+DVAR R + G+K+TPG+S + + G H FV+ D +HP+ ++I++M ++
Sbjct: 448 SQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQME 507
Query: 254 DGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCE 313
+K +GY P+ + +LL+++E+EK++ L HS+K+A+ FGL+ TPPG+ I+I +NLR+C
Sbjct: 508 WQLKFEGYSPDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMCS 567
Query: 314 DCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
DCH K IS I REIVVRDRNRFH F+ G+CSC DYW
Sbjct: 568 DCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 9/166 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G ++ V N+LI+MY +CG +E + VF ++E +T +WS+M+ A G
Sbjct: 153 QIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMG 212
Query: 61 QAKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRR---FFYSMTTEYGIIPQ 116
E L F M E +K + L AC + G ++ G F +E II Q
Sbjct: 213 MWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQ 272
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ + G L +A + M K N + + A++ G +H
Sbjct: 273 TS----LVDMYVKCGCLDKALHIFQKME-KRNNLTYSAMISGLALH 313
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/125 (20%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH 93
A +F +++ F ++ MI+G +EAL +N+M++ G +P+ T+ LL AC
Sbjct: 85 AASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTR 144
Query: 94 MGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWG 153
+ + EG++ + + G+ + ++++ R G ++ + + K W
Sbjct: 145 LKSIREGKQ-IHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESK-TAASWS 202
Query: 154 ALLGG 158
+++
Sbjct: 203 SMVSA 207
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 357 bits (917), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 165/341 (48%), Positives = 237/341 (69%), Gaps = 2/341 (0%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
NI V N +DM++KCG E AR +F EM++R V +WS MI G A++G ++EALT F M
Sbjct: 244 NIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQ 303
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSM--TTEYGIIPQIEHYGCMVDLLSRAG 131
G++PN VTF+G+L AC H G V+EG+R+F M + + + P+ EHY CMVDLL R+G
Sbjct: 304 NEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSG 363
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSN 191
L+EAYEFI+ MP++P+ +WGALLG C VH+++ L ++ + L + P YHV+LSN
Sbjct: 364 LLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSN 423
Query: 192 IYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEK 251
IYA A +W+ V +VR MR LG KK +SS+ +G +H F GD++HPQ++ I++ ++
Sbjct: 424 IYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDE 483
Query: 252 LLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRV 311
+L ++ GY+P+T V D+E +EKE L HSEKLA+ FGL+ PG PIR+MKNLR
Sbjct: 484 ILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRT 543
Query: 312 CEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
C+DCHA K +S + + EI++RD+NRFH F+ G CSC ++W
Sbjct: 544 CDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 16/177 (9%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++GF + L++ V G + AR+VF EM + +F W+ + +G +
Sbjct: 29 KIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQ 88
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
E+L + KM ++G++P+ T+ ++ A +G G ++ +YG +
Sbjct: 89 LPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFA-LHAHVVKYG-------F 140
Query: 121 GC-------MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170
GC +V + + G L A +M +K + V W A L C N +A E
Sbjct: 141 GCLGIVATELVMMYMKFGELSSAEFLFESMQVK-DLVAWNAFLAVCVQTGNSAIALE 196
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + GF V L+ MY+K G L A +F M+ + + W+A + G
Sbjct: 131 LHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGN 190
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF 104
+ AL FNKM ++ + T + +L ACG +G ++ G +
Sbjct: 191 SAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIY 233
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 355 bits (910), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 167/353 (47%), Positives = 240/353 (67%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R +EY +S N+ + L+DM+ +CG +E A VF + E +WS++I+GLA+HG
Sbjct: 270 RAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHG 329
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A +A+ F++MI +G P VTF +L AC H G V++G + +M ++GI P++EHY
Sbjct: 330 HAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHY 389
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GC+VD+L RAG L EA FI M +KPN + GALLG C+++KN ++AE L ++ P
Sbjct: 390 GCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKP 449
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAG-DETH 239
++GY+V+LSNIYA A +W+ + +R +M+ VKK PGWS I +DG +++F G D+ H
Sbjct: 450 EHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKH 509
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ KI + WE++L ++L GY NT D++E+EKE ++ HSEKLA+ +G+M T P
Sbjct: 510 PEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKP 569
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GT IRI+KNLRVCEDCH KLISE+ RE++VRDRNRFH F+ G CSC DYW
Sbjct: 570 GTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 96/203 (47%), Gaps = 17/203 (8%)
Query: 2 VHEYSN------------QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTW 49
VH Y+N Q GFR ++ +++ Y KCG +E AR +F EM R +FTW
Sbjct: 159 VHMYANCGFIAAAGRIFGQMGFR-DVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTW 217
Query: 50 SAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTT 109
S MI G A + ++A+ F M G+ N + ++ +C H+G ++ G R + +
Sbjct: 218 SIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVK 277
Query: 110 EYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAE 169
+ + I +VD+ R G +++A +P + + + W +++ G VH + A
Sbjct: 278 SHMTVNLILGTA-LVDMFWRCGDIEKAIHVFEGLP-ETDSLSWSSIIKGLAVHGHAHKAM 335
Query: 170 EASRQLDQLD--PLNNGYHVVLS 190
Q+ L P + + VLS
Sbjct: 336 HYFSQMISLGFIPRDVTFTAVLS 358
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 355 bits (910), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 168/351 (47%), Positives = 233/351 (66%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH Y +SG + NTL+DMY K G + AR++F + +R V +W++++ A HG
Sbjct: 284 VHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGF 343
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA+ F +M +GI+PN ++F+ +L AC H G +DEG + Y + + GI+P+ HY
Sbjct: 344 GKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHY-YELMKKDGIVPEAWHYV 402
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+VDLL RAG L A FI MPI+P +W ALL CR+HKN +L A+ + +LDP
Sbjct: 403 TVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPD 462
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
+ G HV+L NIYA RW D ARVRK M+ GVKK P S + ++ +H FVA DE HPQ
Sbjct: 463 DPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQ 522
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E+I + WE++L +K GY+P+TS V++ ++++E+E L HSEK+AL F L+NTPPG+
Sbjct: 523 REEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGS 582
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
I I KN+RVC DCH A KL S++V REI+VRD NRFH F+ G+CSC DYW
Sbjct: 583 TIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633
Score = 91.7 bits (226), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH + QS FR +I + NTL++MY KCG LE AR+VF +M +R TW+ +I G + H +
Sbjct: 82 VHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDR 141
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHA--------CGHMGWVDEGRRFFYSMTTEYGI 113
+AL FN+M+ G PN T ++ A CGH + + G
Sbjct: 142 PCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQ---------LHGFCVKCGF 192
Query: 114 IPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ ++DL +R G + +A + + + N V W AL+ G
Sbjct: 193 DSNVHVGSALLDLYTRYGLMDDA-QLVFDALESRNDVSWNALIAG 236
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 84/162 (51%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + GF N+ V + L+D+Y + G ++ A+ VF +E R +W+A+I G A
Sbjct: 182 QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRS 241
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++AL F M+ G +P+ ++ L AC G++++G ++ ++ + G
Sbjct: 242 GTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQG-KWVHAYMIKSGEKLVAFAG 300
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
++D+ +++G + +A + + K + V W +LL H
Sbjct: 301 NTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNSLLTAYAQH 341
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 354 bits (909), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 164/352 (46%), Positives = 232/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++G ++ V +L DMY KCG LE A +F ++ W+ +I HG
Sbjct: 472 KLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHG 531
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
++A+ F +M++ G+KP+ +TF+ LL AC H G VDEG+ F M T+YGI P ++HY
Sbjct: 532 HGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHY 591
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVD+ RAG L+ A +FI++M ++P+ +WGALL CRVH N+DL + AS L +++P
Sbjct: 592 GCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEP 651
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ GYHV+LSN+YA A +WE V +R + G++KTPGWSS+ VD V F G++THP
Sbjct: 652 EHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHP 711
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
E++++ L +K+ GY+P+ VL D+E+ EKE L HSE+LA+ F L+ TP
Sbjct: 712 MYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAK 771
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IRI KNLRVC DCH+ K IS+I REI+VRD NRFH F+ G CSCGDYW
Sbjct: 772 TTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 3/148 (2%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
F +I + N ++ MY K G ++ AR VF + V +W+ +I G A +G A EA+ +N
Sbjct: 380 FLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYN 439
Query: 71 KMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
M E G I N T++ +L AC G + +G + + + G+ + + D+ +
Sbjct: 440 IMEEEGEIAANQGTWVSVLPACSQAGALRQGMK-LHGRLLKNGLYLDVFVVTSLADMYGK 498
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLG 157
G L++A +P + N V W L+
Sbjct: 499 CGRLEDALSLFYQIP-RVNSVPWNTLIA 525
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 128/292 (43%), Gaps = 30/292 (10%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + GF ++ V +LI +Y + + AR +F EM R + +W+AMI G G
Sbjct: 171 KIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSG 230
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
AKEALT N + + + VT + LL AC G + G +S + ++G+ ++
Sbjct: 231 NAKEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVT-IHSYSIKHGLESELFVS 285
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEEASRQLD 176
++DL + G L++ + M ++ + + W +++ ++ + I L +E
Sbjct: 286 NKLIDLYAEFGRLRDCQKVFDRMYVR-DLISWNSIIKAYELNEQPLRAISLFQEMRLSRI 344
Query: 177 QLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGW--SSITVDGVVHEFVA 234
Q D L + L++I ++ + +R G GW IT+ V A
Sbjct: 345 QPDCLT---LISLASILSQ------LGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYA 395
Query: 235 GDETHPQAEKIFQ--------MWEKLLDGMKLKGYIPNTSVVLLDIEEKEKE 278
A +F W ++ G G+ + ++ + +I E+E E
Sbjct: 396 KLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGF-ASEAIEMYNIMEEEGE 446
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 354 bits (908), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 171/353 (48%), Positives = 235/353 (66%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIH 59
++H + +SG ++ V N LI MY K G + A R F + ER +W++MI LA H
Sbjct: 434 QIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQH 493
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G A+EAL F M+ G++P+ +T++G+ AC H G V++GR++F M IIP + H
Sbjct: 494 GHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSH 553
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y CMVDL RAG LQEA EFI MPI+P+ V WG+LL CRVHKNIDL + A+ +L L+
Sbjct: 554 YACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLE 613
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P N+G + L+N+Y+ +WE+ A++RK M++ VKK G+S I V VH F D TH
Sbjct: 614 PENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTH 673
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ +I+ +K+ D +K GY+P+T+ VL D+EE+ KE+ L HSEKLA+ FGL++TP
Sbjct: 674 PEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPD 733
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T +RIMKNLRVC DCH A K IS++V REI+VRD RFH F+ G CSC DYW
Sbjct: 734 KTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 4/153 (2%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
L+D Y+K G + A+ +F+ +++R V W+AMI G HG EA+ F M+ G +
Sbjct: 351 TALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQR 410
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
PN T +L + + G++ S + G I + ++ + ++AG + A
Sbjct: 411 PNSYTLAAMLSVASSLASLSHGKQIHGS-AVKSGEIYSVSVSNALITMYAKAGNITSASR 469
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
+ + + V W +++ H + AEEA
Sbjct: 470 AFDLIRCERDTVSWTSMIIALAQHGH---AEEA 499
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 79/191 (41%), Gaps = 34/191 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFI--------------------- 39
+VH + + G R N+ V N+L++MY KCG A+ VF
Sbjct: 167 KVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVG 226
Query: 40 ----------EMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG-IKPNGVTFIGLL 88
+M ER + TW++MI G G AL F+KM+ + P+ T +L
Sbjct: 227 QMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVL 286
Query: 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPN 148
AC ++ + G++ + T I I ++ + SR G ++ A I K
Sbjct: 287 SACANLEKLCIGKQIHSHIVTTGFDISGIV-LNALISMYSRCGGVETARRLIEQRGTKDL 345
Query: 149 GVV-WGALLGG 158
+ + ALL G
Sbjct: 346 KIEGFTALLDG 356
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 74/160 (46%), Gaps = 5/160 (3%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
NT++ Y K G ++ F ++ +R +W+ MI G GQ +A+ M++ GI+
Sbjct: 84 NTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIE 143
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P T +L + ++ G++ +S + G+ + ++++ ++ G A +
Sbjct: 144 PTQFTLTNVLASVAATRCMETGKK-VHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMA-K 201
Query: 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
F+ + + + W A++ +H + + A Q +Q+
Sbjct: 202 FVFDRMVVRDISSWNAMIA---LHMQVGQMDLAMAQFEQM 238
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 353 bits (907), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 171/351 (48%), Positives = 237/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + G + V + L+ MY +CG LE +RVF M +R V +W+++I +HG
Sbjct: 307 IHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGY 366
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
K+A+ F +M+ G P VTF+ +L AC H G V+EG+R F +M ++GI PQIEHY
Sbjct: 367 GKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYA 426
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RA L EA + +++M +P VWG+LLG CR+H N++LAE ASR+L L+P
Sbjct: 427 CMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPK 486
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G +V+L++IYAEA+ W++V RV+KL+ + G++K PG + V ++ FV+ DE +P
Sbjct: 487 NAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPL 546
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E+I KL + MK KGYIP T VL ++E +EKE+ + HSEKLAL FGL+NT G
Sbjct: 547 MEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGE 606
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLR+CEDCH K IS+ + +EI+VRD NRFH F+ G CSCGDYW
Sbjct: 607 PIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 8/175 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + + G+ ++ + TL+DMY + GC++ A VF M R V +WSAMI A +G+
Sbjct: 204 IHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGK 263
Query: 62 AKEALTSFNKMIE--IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
A EAL +F +M+ PN VT + +L AC + +++G + + G+ +
Sbjct: 264 AFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQG-KLIHGYILRRGLDSILPV 322
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEE 170
+V + R G L+ M + + V W +L+ VH K I + EE
Sbjct: 323 ISALVTMYGRCGKLEVGQRVFDRMHDR-DVVSWNSLISSYGVHGYGKKAIQIFEE 376
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 81/161 (50%), Gaps = 6/161 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH + +G ++ + LI MY G ++ AR+VF + +RT++ W+A+ + L + G
Sbjct: 98 RVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAG 157
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHAC----GHMGWVDEGRRFFYSMTTEYGIIPQ 116
+E L + KM IG++ + T+ +L AC + + +G+ ++ T G
Sbjct: 158 HGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKE-IHAHLTRRGYSSH 216
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
+ +VD+ +R G + A MP++ N V W A++
Sbjct: 217 VYIMTTLVDMYARFGCVDYASYVFGGMPVR-NVVSWSAMIA 256
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 353 bits (906), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 236/352 (67%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y + GF NI + + L+DMY KCG ++ AR++F M +W+A+I G A+HG
Sbjct: 364 QLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHG 423
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA++ F +M G+KPN V F+ +L AC H+G VDE +F SMT YG+ ++EHY
Sbjct: 424 HGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHY 483
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+ DLL RAG L+EAY FI M ++P G VW LL C VHKN++LAE+ + ++ +D
Sbjct: 484 AAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDS 543
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +V++ N+YA RW+++A++R MR G++K P S I + H FV+GD +HP
Sbjct: 544 ENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHP 603
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+KI + + +++ M+ +GY+ +TS VL D++E+ K + L+ HSE+LA+ FG++NT PG
Sbjct: 604 SMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPG 663
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T IR+ KN+R+C DCH A K IS+I REI+VRD +RFH F G+CSCGDYW
Sbjct: 664 TTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 88/177 (49%), Gaps = 6/177 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y + G ++ + ++L+DMY K +E + RVF + R +W++++ G +G+
Sbjct: 264 IHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGR 323
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EAL F +M+ +KP V F ++ AC H+ + G++ + G I
Sbjct: 324 YNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQ-LHGYVLRGGFGSNIFIAS 382
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRV----HKNIDLAEEASRQ 174
+VD+ S+ G ++ A + M + + V W A++ G + H+ + L EE RQ
Sbjct: 383 ALVDMYSKCGNIKAARKIFDRMNV-LDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQ 438
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 351 bits (901), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 238/351 (67%), Gaps = 1/351 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
++EY +S +R ++ + + LIDM+ KCG +EGAR VF +R V WSAMI G +HG+
Sbjct: 345 MYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGR 404
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+EA++ + M G+ PN VTF+GLL AC H G V EG FF M ++ I PQ +HY
Sbjct: 405 AREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMA-DHKINPQQQHYA 463
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C++DLL RAG L +AYE I+ MP++P VWGALL C+ H++++L E A++QL +DP
Sbjct: 464 CVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPS 523
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N G++V LSN+YA A W+ VA VR M+ G+ K G S + V G + F GD++HP+
Sbjct: 524 NTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPR 583
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E+I + E + +K G++ N L D+ ++E E+ L HSE++A+ +GL++TP GT
Sbjct: 584 YEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGT 643
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
P+RI KNLR C +CHAA KLIS++V+REIVVRD NRFH F+ G CSCGDYW
Sbjct: 644 PLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 79/144 (54%), Gaps = 4/144 (2%)
Query: 20 TLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP 79
+L MY KCG + A+ +F +M+ + W+AMI G A +G A+EA+ F++MI ++P
Sbjct: 262 SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRP 321
Query: 80 NGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
+ ++ + AC +G +++ R + Y ++Y + ++D+ ++ G ++ A
Sbjct: 322 DTISITSAISACAQVGSLEQARSMYEYVGRSDYR--DDVFISSALIDMFAKCGSVEGA-R 378
Query: 139 FIRNMPIKPNGVVWGALLGGCRVH 162
+ + + + VVW A++ G +H
Sbjct: 379 LVFDRTLDRDVVVWSAMIVGYGLH 402
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 84/159 (52%), Gaps = 4/159 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIH 59
VH + GF ++ V N LI +Y KC L AR VF + + ERT+ +W+A++ A +
Sbjct: 141 VHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQN 200
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
G+ EAL F++M ++ +KP+ V + +L+A + + +GR S+ + G+ + +
Sbjct: 201 GEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASV-VKMGLEIEPDL 259
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+ + ++ G + A M PN ++W A++ G
Sbjct: 260 LISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAMISG 297
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 7/151 (4%)
Query: 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTS 68
SGF + LI G + AR+VF ++ +F W+A+I+G + + ++AL
Sbjct: 52 SGF-----LITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLM 106
Query: 69 FNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128
++ M + P+ TF LL AC + + G RF ++ G + ++ L +
Sbjct: 107 YSNMQLARVSPDSFTFPHLLKACSGLSHLQMG-RFVHAQVFRLGFDADVFVQNGLIALYA 165
Query: 129 RAGFLQEAYEFIRNMPIKPNGVV-WGALLGG 158
+ L A +P+ +V W A++
Sbjct: 166 KCRRLGSARTVFEGLPLPERTIVSWTAIVSA 196
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 351 bits (901), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 227/352 (64%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H +SGF N+ V ++ +DMY KCG L + +F E++E+ + W+ +I G A H
Sbjct: 284 QMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHA 343
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ KE + F KM + G+ PN VTF LL CGH G V+EGRRFF M T YG+ P + HY
Sbjct: 344 RPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHY 403
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVD+L RAG L EAYE I+++P P +WG+LL CRV+KN++LAE A+ +L +L+P
Sbjct: 404 SCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEP 463
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G HV+LSNIYA ++WE++A+ RKL+R+ VKK G S I + VH F G+ HP
Sbjct: 464 ENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHP 523
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I + L+ + GY P+ L D+E +KE+ L +HSEKLAL FGLM P
Sbjct: 524 RIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPES 583
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+P+RIMKNLR+C DCH K S R I+VRD NRFH F G CSCGD+W
Sbjct: 584 SPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 105/214 (49%), Gaps = 7/214 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S ++ N+ V L+D+Y KCG ++ A +VF M++++ TWS+M+ G +
Sbjct: 183 KLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNK 242
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL + + + ++ N T ++ AC ++ + EG++ +++ + G +
Sbjct: 243 NYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQ-MHAVICKSGFGSNVFVA 301
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH---KNIDLAEEASRQLDQ 177
VD+ ++ G L+E+Y + K N +W ++ G H K + + E +Q D
Sbjct: 302 SSAVDMYAKCGSLRESYIIFSEVQEK-NLELWNTIISGFAKHARPKEVMILFEKMQQ-DG 359
Query: 178 LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRN 211
+ P + +LS + E+ R KLMR
Sbjct: 360 MHPNEVTFSSLLS-VCGHTGLVEEGRRFFKLMRT 392
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 2/172 (1%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ + N LI+ Y KCG +E AR+VF M ER++ +W+ MI + EAL F +M
Sbjct: 95 DVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMR 154
Query: 74 EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133
G K + T +L ACG E ++ + ++ + I + ++DL ++ G +
Sbjct: 155 NEGFKFSEFTISSVLSACGVNCDALECKK-LHCLSVKTCIDLNLYVGTALLDLYAKCGMI 213
Query: 134 QEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGY 185
++A + +M K + V W +++ G +KN + A R+ ++ N +
Sbjct: 214 KDAVQVFESMQDK-SSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQF 264
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 351 bits (901), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 170/353 (48%), Positives = 242/353 (68%), Gaps = 2/353 (0%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM-EERTVFTWSAMIQGLAIHG 60
VH Y ++ +I + LIDMY KCG LE A+RVF + ++ V +SAMI LA++G
Sbjct: 221 VHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYG 280
Query: 61 QAKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
E F++M I PN VTF+G+L AC H G ++EG+ +F M E+GI P I+H
Sbjct: 281 LTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQH 340
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YGCMVDL R+G ++EA FI +MP++P+ ++WG+LL G R+ +I E A ++L +LD
Sbjct: 341 YGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELD 400
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P+N+G +V+LSN+YA+ RW +V +R M G+ K PG S + V+GVVHEFV GDE+
Sbjct: 401 PMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQ 460
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
++E+I+ M ++++ ++ GY+ +T VLLD+ EK+KE L HSEKLA+ F LM T P
Sbjct: 461 QESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRP 520
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
GTP+RI+KNLR+C DCH K+IS++ +REIVVRD NRFH F+ GSCSC D+W
Sbjct: 521 GTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 121/263 (46%), Gaps = 15/263 (5%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+++ N++++ Y K G ++ AR++F EM ER V +WS +I G + G+ KEAL F +M
Sbjct: 126 KDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREM 185
Query: 73 I-----EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
E ++PN T +L ACG +G +++G ++ ++ +Y + I ++D+
Sbjct: 186 QLPKPNEAFVRPNEFTMSTVLSACGRLGALEQG-KWVHAYIDKYHVEIDIVLGTALIDMY 244
Query: 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV 187
++ G L+ A + K + + A++ ++ D + ++ D +N
Sbjct: 245 AKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVT 304
Query: 188 VLSNIYAEAERW---EDVARVRKLMRNLGVKKTPGWSSITVD-----GVVHEFVAGDETH 239
+ + A R E + + ++ G+ + VD G++ E + +
Sbjct: 305 FVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASM 364
Query: 240 PQAEKIFQMWEKLLDGMKLKGYI 262
P + +W LL G ++ G I
Sbjct: 365 PMEPDVL-IWGSLLSGSRMLGDI 386
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 351 bits (900), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 169/352 (48%), Positives = 244/352 (69%), Gaps = 6/352 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
R+ +N S R +LIDMY KCG +E A +VF + +++ +W+AMI G A+HG
Sbjct: 396 RLKGVTNASSLR------TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHG 449
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A + F++M +IGI+P+ +TF+GLL AC H G +D GR F +MT +Y + P++EHY
Sbjct: 450 RADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHY 509
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCM+DLL +G +EA E I M ++P+GV+W +LL C++H N++L E + L +++P
Sbjct: 510 GCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEP 569
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N G +V+LSNIYA A RW +VA+ R L+ + G+KK PG SSI +D VVHEF+ GD+ HP
Sbjct: 570 ENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHP 629
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ +I+ M E++ ++ G++P+TS VL ++EE+ KE L HSEKLA+ FGL++T PG
Sbjct: 630 RNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPG 689
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T + I+KNLRVC +CH A KLIS+I REI+ RDR RFH F+ G CSC DYW
Sbjct: 690 TKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 86/167 (51%), Gaps = 2/167 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + GF N+++ N LID+Y KCG LE A +F + + V +W+ +I G
Sbjct: 287 QVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMN 346
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY-GIIPQIEH 119
KEAL F +M+ G PN VT + +L AC H+G +D GR + G+
Sbjct: 347 LYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSL 406
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNID 166
++D+ ++ G ++ A++ + N + + W A++ G +H D
Sbjct: 407 RTSLIDMYAKCGDIEAAHQ-VFNSILHKSLSSWNAMIFGFAMHGRAD 452
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 85/159 (53%), Gaps = 5/159 (3%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
R++ LI Y G +E A+++F E+ + V +W+AMI G A G KEAL F M
Sbjct: 198 RDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDM 257
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
++ ++P+ T + ++ AC G ++ GR+ + ++G ++ ++DL S+ G
Sbjct: 258 MKTNVRPDESTMVTVVSACAQSGSIELGRQ-VHLWIDDHGFGSNLKIVNALIDLYSKCGE 316
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
L+ A +P K + + W L+GG + +++L +EA
Sbjct: 317 LETACGLFERLPYK-DVISWNTLIGG---YTHMNLYKEA 351
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 96/219 (43%), Gaps = 12/219 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEG---ARRVFIEMEERTVFTWSAMIQGLAI 58
+H + G + LI+ + EG A VF ++E + W+ M +G A+
Sbjct: 52 IHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHAL 111
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
AL + MI +G+ PN TF +L +C EG++ + + G +
Sbjct: 112 SSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQ-IHGHVLKLGCDLDLY 170
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ ++ + + G L++A++ P + + V + AL+ G I E A + D++
Sbjct: 171 VHTSLISMYVQNGRLEDAHKVFDKSPHR-DVVSYTALIKGYASRGYI---ENAQKLFDEI 226
Query: 179 DPLNN--GYHVVLSNIYAEAERWEDVARVRKLMRNLGVK 215
P+ + ++ ++S YAE +++ + K M V+
Sbjct: 227 -PVKDVVSWNAMISG-YAETGNYKEALELFKDMMKTNVR 263
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 350 bits (898), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 163/351 (46%), Positives = 237/351 (67%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
++ Y ++G + ++R+ TL+DM+ +CG E A +F + R V W+A I +A+ G
Sbjct: 492 IYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGN 551
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A+ A+ F+ MIE G+KP+GV F+G L AC H G V +G+ FYSM +G+ P+ HYG
Sbjct: 552 AERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYG 611
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
CMVDLL RAG L+EA + I +MP++PN V+W +LL CRV N+++A A+ ++ L P
Sbjct: 612 CMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPE 671
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
G +V+LSN+YA A RW D+A+VR M+ G++K PG SSI + G HEF +GDE+HP+
Sbjct: 672 RTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPE 731
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
I M +++ G++P+ S VL+D++EKEK L RHSEKLA+ +GL+++ GT
Sbjct: 732 MPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGT 791
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IRI+KNLRVC DCH+ K S++ NREI++RD NRFH + G CSCGD+W
Sbjct: 792 TIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 123/278 (44%), Gaps = 43/278 (15%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G+ +++ V N+L+ Y +CG L+ AR+VF EM ER V +W++MI G A
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRD 214
Query: 61 QAKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
AK+A+ F +M+ + + PN VT + ++ AC + ++ G
Sbjct: 215 FAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETG------------------- 255
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
++ Y FIRN I+ N ++ AL+ ID+A+ R D+
Sbjct: 256 --------------EKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAK---RLFDEYG 298
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVK--KTPGWSSITVDGVVHEFVAGDE 237
N +++ Y + V LM + GV+ + S+I+ + + G
Sbjct: 299 ASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKS 358
Query: 238 THPQAEKI-FQMWEKLLDG---MKLKGYIPNTSVVLLD 271
H + F+ W+ + + M +K + +T+ + D
Sbjct: 359 CHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFD 396
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 33/173 (19%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H Y ++GF +CN LIDMY+KC + A R+F M +TV TW++++ G +G+
Sbjct: 360 HGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEV 419
Query: 63 KEALTSFNKM------------------------IEI--------GIKPNGVTFIGLLHA 90
A +F M IE+ G+ +GVT + + A
Sbjct: 420 DAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASA 479
Query: 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM 143
CGH+G +D + +Y + GI + +VD+ SR G + A ++
Sbjct: 480 CGHLGALDLAKWIYYYIEKN-GIQLDVRLGTTLVDMFSRCGDPESAMSIFNSL 531
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 16/234 (6%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEG---ARRVFIEMEER-TVFTWSAMIQGLAI 58
H + G ++ L+ + G E A+ VF E T F ++++I+G A
Sbjct: 52 HRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYAS 111
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE 118
G EA+ F +M+ GI P+ TF L AC G + + + + G +
Sbjct: 112 SGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQ-IHGLIVKMGYAKDLF 170
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL--- 175
+V + G L A + M + N V W +++ G + D A++A
Sbjct: 171 VQNSLVHFYAECGELDSARKVFDEMS-ERNVVSWTSMICG---YARRDFAKDAVDLFFRM 226
Query: 176 ---DQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVD 226
+++ P N+ V + + A+ E E +V +RN G++ S VD
Sbjct: 227 VRDEEVTP-NSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVD 279
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis
thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 349 bits (895), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 156/352 (44%), Positives = 233/352 (66%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH ++G+ VCN LI MY KCG + A + F+E+ + +W+A+I + HG
Sbjct: 713 QVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHG 772
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EAL SF++MI ++PN VT +G+L AC H+G VD+G +F SM +EYG+ P+ EHY
Sbjct: 773 FGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHY 832
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VD+L+RAG L A EFI+ MPIKP+ +VW LL C VHKN+++ E A+ L +L+P
Sbjct: 833 VCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEP 892
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ +V+LSN+YA +++W+ R+ M+ GVKK PG S I V +H F GD+ HP
Sbjct: 893 EDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHP 952
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
A++I + ++ L GY+ + +L +++ ++K+ ++ HSEKLA++FGL++ P
Sbjct: 953 LADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPAT 1012
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PI +MKNLRVC DCHA K +S++ NREI+VRD RFH F+ G+CSC DYW
Sbjct: 1013 VPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 5/173 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ F+ N VC+ LIDMY K G L+ A + I + V +W+ MI G +
Sbjct: 511 QIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYN 570
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ALT+F +M++ GI+ + V + AC + + EG++ ++ G +
Sbjct: 571 FDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-IHAQACVSGFSSDLPFQ 629
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR 173
+V L SR G ++E+Y N + W AL+ G + N EEA R
Sbjct: 630 NALVTLYSRCGKIEESYLAFEQTEAGDN-IAWNALVSGFQQSGN---NEEALR 678
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 76/147 (51%), Gaps = 2/147 (1%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF + VCN L+ +Y G L A +F M +R T++ +I GL+ G ++A+ F
Sbjct: 318 GFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELF 377
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+M G++P+ T L+ AC G + G++ ++ TT+ G + G +++L ++
Sbjct: 378 KRMHLDGLEPDSNTLASLVVACSADGTLFRGQQ-LHAYTTKLGFASNNKIEGALLNLYAK 436
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALL 156
++ A ++ ++ N V+W +L
Sbjct: 437 CADIETALDYFLETEVE-NVVLWNVML 462
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G N + L D Y+ G L GA +VF EM ERT+FTW+ MI+ LA
Sbjct: 106 KLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRN 165
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
E F +M+ + PN TF G+L AC + ++ G+
Sbjct: 166 LIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVC 225
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++DL SR GF+ A + +K + W A++ G
Sbjct: 226 NPLIDLYSRNGFVDLARRVFDGLRLKDHS-SWVAMISG 262
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 5/178 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + SGF ++ N L+ +Y +CG +E + F + E W+A++ G G
Sbjct: 612 QIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSG 671
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F +M GI N TF + A + +G++ +++ T+ G + E
Sbjct: 672 NNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQ-VHAVITKTGYDSETEVC 730
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++ + ++ G + +A + + K N V W A++ H EA DQ+
Sbjct: 731 NALISMYAKCGSISDAEKQFLEVSTK-NEVSWNAIINAYSKH---GFGSEALDSFDQM 784
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 4/185 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H G R + VCN LID+Y + G ++ ARRVF + + +W AMI GL+ +
Sbjct: 208 QIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNE 267
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
EA+ F M +GI P F +L AC + ++ G + + + + G
Sbjct: 268 CEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQ-LHGLVLKLGFSSDTYVC 326
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQ--LDQL 178
+V L G L A NM + + V + L+ G + A E ++ LD L
Sbjct: 327 NALVSLYFHLGNLISAEHIFSNMS-QRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGL 385
Query: 179 DPLNN 183
+P +N
Sbjct: 386 EPDSN 390
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 82/178 (46%), Gaps = 8/178 (4%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y+ + GF N ++ L+++Y KC +E A F+E E V W+ M+ +
Sbjct: 410 QLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLD 469
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYS-MTTEYGIIPQIEH 119
+ + F +M I PN T+ +L C +G ++ G + + T + Q+
Sbjct: 470 DLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNF----QLNA 525
Query: 120 YGC--MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
Y C ++D+ ++ G L A++ + K + V W ++ G + D A RQ+
Sbjct: 526 YVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAGYTQYNFDDKALTTFRQM 582
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 347 bits (889), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 164/351 (46%), Positives = 234/351 (66%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H Y ++G+ + V N+L+DMY KCG L A +F ++ + + +W+ MI G +HG
Sbjct: 521 IHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGF 580
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
KEA+ FN+M + GI+ + ++F+ LL+AC H G VDEG RFF M E I P +EHY
Sbjct: 581 GKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYA 640
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
C+VD+L+R G L +AY FI NMPI P+ +WGALL GCR+H ++ LAE+ + ++ +L+P
Sbjct: 641 CIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPE 700
Query: 182 NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQ 241
N GY+V+++NIYAEAE+WE V R+RK + G++K PG S I + G V+ FVAGD ++P+
Sbjct: 701 NTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPE 760
Query: 242 AEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
E I K+ M +GY P T L+D EE EKE+ L HSEKLA+ G++++ G
Sbjct: 761 TENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGK 820
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
IR+ KNLRVC DCH K +S++ REIV+RD NRFH F+ G CSC +W
Sbjct: 821 IIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH ++ F R R CNTL+DMY KCG L+ A+ VF EM +R+V ++++MI G A G
Sbjct: 318 VHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGL 377
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
A EA+ F +M E GI P+ T +L+ C +DEG+R + E + I
Sbjct: 378 AGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKR-VHEWIKENDLGFDIFVSN 436
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
++D+ ++ G +QEA M +K + + W ++GG
Sbjct: 437 ALMDMYAKCGSMQEAELVFSEMRVK-DIISWNTIIGG 472
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVHE+ ++ +I V N L+DMY KCG ++ A VF EM + + +W+ +I G + +
Sbjct: 418 RVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNC 477
Query: 61 QAKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
A EAL+ FN ++E P+ T +L AC + D+GR + G
Sbjct: 478 YANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGRE-IHGYIMRNGYFSDRHV 536
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ ++ G L A+ ++ K + V W ++ G +H
Sbjct: 537 ANSLVDMYAKCGALLLAHMLFDDIASK-DLVSWTVMIAGYGMH 578
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 111/260 (42%), Gaps = 43/260 (16%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + +SGF V N+L+ Y+K ++ AR+VF EM ER V +W+++I G +G
Sbjct: 216 QLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNG 275
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR---------------RFFY 105
A++ L+ F +M+ GI+ + T + + C + GR RF
Sbjct: 276 LAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCN 335
Query: 106 SMTTEYGIIPQIE---------------HYGCMVDLLSRAGFLQEAYEFIRNMP---IKP 147
++ Y ++ Y M+ +R G EA + M I P
Sbjct: 336 TLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISP 395
Query: 148 NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSN----IYAEAERWEDVA 203
+ A+L C ++ +D E R + + + G+ + +SN +YA+ ++
Sbjct: 396 DVYTVTAVLNCCARYRLLD---EGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAE 452
Query: 204 RVRKLMRNLGVKKTPGWSSI 223
V MR VK W++I
Sbjct: 453 LVFSEMR---VKDIISWNTI 469
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V + +GF + + + L MY CG L+ A RVF E++ W+ ++ LA G
Sbjct: 116 VDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGD 175
Query: 62 AKEALTSFNKMIEIGIKPNGVTF 84
++ F KM+ G++ + TF
Sbjct: 176 FSGSIGLFKKMMSSGVEMDSYTF 198
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 346 bits (888), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 168/351 (47%), Positives = 242/351 (68%), Gaps = 12/351 (3%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMI 73
++ V N+LI+MY KCG L A +VF M++R + +W+AMI G A HG+A+EA+ F++M+
Sbjct: 288 DVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMV 347
Query: 74 EI--GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
+ ++PN VTF+GLL AC H G+V++GR++F M +Y I P +EHYGC+VDL++RAG
Sbjct: 348 DKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAG 407
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGC-RVHKNIDLAEEASRQLDQLDPLN-------N 183
++ EA + + +MP+KP+ V+W +LL C + +++L+EE +R + N +
Sbjct: 408 YITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCS 467
Query: 184 GYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAE 243
G +V+LS +YA A RW DV VRKLM G++K PG SSI ++G+ HEF AGD +HPQ +
Sbjct: 468 GAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTK 527
Query: 244 KIFQMWEKLLDGMKLKGYIPNTS-VVLLD-IEEKEKEKFLYRHSEKLALTFGLMNTPPGT 301
+I+Q + + D ++ GY+P+ S L+D + KE L HSE+LA+ FGL+N PP T
Sbjct: 528 QIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQT 587
Query: 302 PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIRI KNLRVC DCH KLIS++ N EI+VRDR RFH F+ GSCSC DYW
Sbjct: 588 PIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 7/180 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + GF ++ V N LI +Y CGCL+ AR+VF EM ER++ +W++MI L G
Sbjct: 172 QVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFG 231
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR--RFFYSMTTEYGIIPQIE 118
+ AL F +M + +P+G T +L AC +G + G F + + +
Sbjct: 232 EYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVL 290
Query: 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++++ + G L+ A + + M K + W A++ G H AEEA D++
Sbjct: 291 VKNSLIEMYCKCGSLRMAEQVFQGMQ-KRDLASWNAMILGFATHGR---AEEAMNFFDRM 346
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 106/267 (39%), Gaps = 46/267 (17%)
Query: 34 ARRVFIEMEERTVFTWSAMIQGLAIH-GQAKEALTSFNKMIEIG-IKPNGVTFIGLLHAC 91
A RVF +E + F W+ +I+ A + +EA + KM+E G P+ TF +L AC
Sbjct: 102 AFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKAC 161
Query: 92 GHMGWVDEGRR---------FFYSMTTEYGIIPQIEHYGC-------------------- 122
++ EG++ F + G+I GC
Sbjct: 162 AYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWN 221
Query: 123 -MVDLLSRAGFLQEAYEFIRNM--PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
M+D L R G A + R M +P+G ++L C ++ L A L +
Sbjct: 222 SMIDALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKC 281
Query: 180 PLNNGYHVVLSNIYAEAE-RWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
++ V++ N E + + ++ + + + W+++ + G T
Sbjct: 282 DVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAM---------ILGFAT 332
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNT 265
H +AE+ +++++D K + PN+
Sbjct: 333 HGRAEEAMNFFDRMVD--KRENVRPNS 357
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 344 bits (882), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 169/356 (47%), Positives = 231/356 (64%), Gaps = 4/356 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + G N VCN LI MY KCG ++ A RVF ME R V +W++MI G A HG
Sbjct: 495 QIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHG 554
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A L +FN+MIE G+KPN VT++ +L AC H+G V EG R F SM ++ I P++EHY
Sbjct: 555 FAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHY 614
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG L +A+EFI MP + + +VW LG CRVH N +L + A+R++ +LDP
Sbjct: 615 ACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDP 674
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
++ LSNIYA A +WE+ +R+ M+ + K G S I V +H+F GD HP
Sbjct: 675 NEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHP 734
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDI----EEKEKEKFLYRHSEKLALTFGLMN 296
A +I+ ++L+ +K GY+P+T +VL + +E EKE+ LY+HSEK+A+ FGL++
Sbjct: 735 NAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLIS 794
Query: 297 TPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T P+R+ KNLRVC DCH A K IS + REIV+RD NRFH F+ G CSC DYW
Sbjct: 795 TSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 84/166 (50%), Gaps = 10/166 (6%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKC---GCLEGARRVFIEMEERTVFTWSAMIQGLA 57
++H ++ +SG ++ +L+DMY KC G ++ R+VF ME+ +V +W+A+I G
Sbjct: 290 QLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYM 347
Query: 58 IH-GQAKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP 115
+ A EA+ F++MI G ++PN TF ACG++ G++ + G+
Sbjct: 348 KNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVL-GQAFKRGLAS 406
Query: 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG-CR 160
++ + ++ +++A ++ K N V + L G CR
Sbjct: 407 NSSVANSVISMFVKSDRMEDAQRAFESLSEK-NLVSYNTFLDGTCR 451
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 93/204 (45%), Gaps = 27/204 (13%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEME---ERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEI 75
N+LI +Y K G A VF M +R V +WSAM+ +G+ +A+ F + +E+
Sbjct: 101 NSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLEL 160
Query: 76 GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY------GC-MVDLLS 128
G+ PN + ++ AC + +V GR G + + H+ GC ++D+
Sbjct: 161 GLVPNDYCYTAVIRACSNSDFVGVGR-------VTLGFLMKTGHFESDVCVGCSLIDMFV 213
Query: 129 RA-GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYH- 186
+ + AY+ M + N V W ++ C + EA R LD + +G+
Sbjct: 214 KGENSFENAYKVFDKMS-ELNVVTWTLMITRC---MQMGFPREAIRFF--LDMVLSGFES 267
Query: 187 --VVLSNIYAEAERWEDVARVRKL 208
LS++++ E+++ ++L
Sbjct: 268 DKFTLSSVFSACAELENLSLGKQL 291
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 73/158 (46%), Gaps = 8/158 (5%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
+ G N V N++I M+VK +E A+R F + E+ + +++ + G + ++A
Sbjct: 401 KRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFK 460
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127
+++ E + + TF LL ++G + +G + +S + G+ ++ +
Sbjct: 461 LLSEITERELGVSAFTFASLLSGVANVGSIRKGEQ-IHSQVVKLGLSCNQPVCNALISMY 519
Query: 128 SRAGFLQEA---YEFIRNMPIKPNGVVWGALLGGCRVH 162
S+ G + A + F+ N N + W +++ G H
Sbjct: 520 SKCGSIDTASRVFNFMEN----RNVISWTSMITGFAKH 553
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 343 bits (880), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 171/352 (48%), Positives = 232/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H+ ++S ++ +LI MY KCG L A ++F M+++ V W+AMI G A HG
Sbjct: 305 QIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHG 364
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A +AL F +MI+ I+P+ +TF+ +L AC H G V+ G +F SM +Y + PQ +HY
Sbjct: 365 NADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHY 424
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CMVDLL RAG L+EA + IR+MP +P+ V+G LLG CRVHKN++LAE A+ +L QL+
Sbjct: 425 TCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNS 484
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N +V L+NIYA RWEDVARVRK M+ V K PG+S I + VH F + D HP
Sbjct: 485 QNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHP 544
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+ + I + ++L MKL GY P L ++EE++KEK L HSEKLA+ FG + P G
Sbjct: 545 ELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQG 604
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+ I++ KNLR+C DCH A K ISEI REI+VRD RFH F+ GSCSCGDYW
Sbjct: 605 SQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 3/157 (1%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
R + +I Y+K +E A +F +M + + TW+AMI G + + ++ L F
Sbjct: 215 RGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRA 274
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M+E GI+PN L C + + GR+ + + ++ + + ++ + + G
Sbjct: 275 MLEEGIRPNSSGLSSALLGCSELSALQLGRQ-IHQIVSKSTLCNDVTALTSLISMYCKCG 333
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168
L +A++ M K + V W A++ G H N D A
Sbjct: 334 ELGDAWKLFEVMK-KKDVVAWNAMISGYAQHGNADKA 369
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 107/249 (42%), Gaps = 39/249 (15%)
Query: 4 EYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLA------ 57
+Y + + I N +I V+ G ++GA RVF M + TW++++ G++
Sbjct: 50 DYLTKPSDQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRM 109
Query: 58 -----IHGQAKEALT-SFNKMIEIGIK----------------PNGVTFIGLLHACGHMG 95
+ + E T S+N M+ ++ + ++ ++ G
Sbjct: 110 MEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRG 169
Query: 96 WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVV-WGA 154
+++ R FYSM + + + M+ G L++A F + P++ GVV W A
Sbjct: 170 EMEKARELFYSMMEKNEV-----SWNAMISGYIECGDLEKASHFFKVAPVR--GVVAWTA 222
Query: 155 LLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGV 214
++ G K ++LAE + + L ++ ++S Y E R ED ++ + M G+
Sbjct: 223 MITGYMKAKKVELAEAMFKDMTVNKNLVT-WNAMISG-YVENSRPEDGLKLFRAMLEEGI 280
Query: 215 K-KTPGWSS 222
+ + G SS
Sbjct: 281 RPNSSGLSS 289
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 340 bits (871), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 163/342 (47%), Positives = 225/342 (65%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
+ +++ + N L+DMY KCG LE A RVF +M+ER V TWS MI GLA +G ++EAL F
Sbjct: 289 YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFE 348
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130
+M G KPN +T +G+L AC H G +++G +F SM YGI P EHYGCM+DLL +A
Sbjct: 349 RMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKA 408
Query: 131 GFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190
G L +A + + M +P+ V W LLG CRV +N+ LAE A++++ LDP + G + +LS
Sbjct: 409 GKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLS 468
Query: 191 NIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWE 250
NIYA +++W+ V +R MR+ G+KK PG S I V+ +H F+ GD +HPQ ++ +
Sbjct: 469 NIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLN 528
Query: 251 KLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLR 310
+L+ + GY+P T+ VL D+E ++ E L HSEKLAL FGLM P IRI KNLR
Sbjct: 529 QLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLR 588
Query: 311 VCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
+C DCH KL S++ R IV+RD R+H FQ G CSCGDYW
Sbjct: 589 ICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLA---IH 59
H Y N G R + + N LI+MYVK L A ++F +M +R V +W+ MI + IH
Sbjct: 86 HLYFN--GHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIH 143
Query: 60 GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
+A E L M+ ++PN T+ +L +C M V R + + G+ +
Sbjct: 144 QKALELLV---LMLRDNVRPNVYTYSSVLRSCNGMSDV----RMLHCGIIKEGLESDVFV 196
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
++D+ ++ G ++A M + + +VW +++GG + D+A E +++
Sbjct: 197 RSALIDVFAKLGEPEDALSVFDEM-VTGDAIVWNSIIGGFAQNSRSDVALELFKRM 251
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 10/154 (6%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
+ G ++ V + LID++ K G E A VF EM W+++I G A + ++ AL
Sbjct: 187 KEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALE 246
Query: 68 SFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY---GCMV 124
F +M G T +L AC + ++ G M I+ + +V
Sbjct: 247 LFKRMKRAGFIAEQATLTSVLRACTGLALLELG------MQAHVHIVKYDQDLILNNALV 300
Query: 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
D+ + G L++A M + + + W ++ G
Sbjct: 301 DMYCKCGSLEDALRVFNQMK-ERDVITWSTMISG 333
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 339 bits (870), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 155/336 (46%), Positives = 226/336 (67%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V +L+DMY KCG ++ A +F +E + W+AM+ GLA HG+ KE L F +M +G
Sbjct: 655 VGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLG 714
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
IKP+ VTFIG+L AC H G V E + SM +YGI P+IEHY C+ D L RAG +++A
Sbjct: 715 IKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQA 774
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
I +M ++ + ++ LL CRV + + + + +L +L+PL++ +V+LSN+YA A
Sbjct: 775 ENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAA 834
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGM 256
+W+++ R +M+ VKK PG+S I V +H FV D ++ Q E I++ + ++ +
Sbjct: 835 SKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDI 894
Query: 257 KLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCH 316
K +GY+P T L+D+EE+EKE+ LY HSEKLA+ FGL++TPP TPIR++KNLRVC DCH
Sbjct: 895 KQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCH 954
Query: 317 AAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
A K I+++ NREIV+RD NRFH F+ G CSCGDYW
Sbjct: 955 NAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 2/162 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y+ +SG+ ++ V + ++DMYVKCG + A+ F + W+ MI G +G
Sbjct: 538 QVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENG 597
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ + A F++M +G+ P+ T L A + +++GR+ ++ +
Sbjct: 598 EEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQ-IHANALKLNCTNDPFVG 656
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+VD+ ++ G + +AY + + + N W A+L G H
Sbjct: 657 TSLVDMYAKCGSIDDAYCLFKRIEMM-NITAWNAMLVGLAQH 697
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + G + V N+LI+MY K AR VF M ER + +W+++I G+A +G
Sbjct: 336 QVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNG 395
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM 94
EA+ F +++ G+KP+ T +L A +
Sbjct: 396 LEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSL 429
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 14/160 (8%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA-----KEALTSFNKMI 73
N LI MY KCG L ARRVF +M +R + +W++++ A + ++A F +
Sbjct: 78 NNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILR 137
Query: 74 EIGIKPNGVTFIGLLHACGHMG--WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
+ + + +T +L C H G W E F+ + G+ G +V++ + G
Sbjct: 138 QDVVYTSRMTLSPMLKLCLHSGYVWASES---FHGYACKIGLDGDEFVAGALVNIYLKFG 194
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEA 171
++E MP + + V+W +L + + + EEA
Sbjct: 195 KVKEGKVLFEEMPYR-DVVLWNLML---KAYLEMGFKEEA 230
Score = 39.7 bits (91), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 3 HEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62
H Y+ + G + V L+++Y+K G ++ + +F EM R V W+ M++ G
Sbjct: 168 HGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFK 227
Query: 63 KEALTSFNKMIEIGIKPNGVTF 84
+EA+ + G+ PN +T
Sbjct: 228 EEAIDLSSAFHSSGLNPNEITL 249
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 338 bits (867), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 161/344 (46%), Positives = 230/344 (66%), Gaps = 1/344 (0%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
G+ +++ N LI+MY KCGCLE + RVF M R V TW+ MI ++G+ ++AL +F
Sbjct: 539 GYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETF 598
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
M + GI P+ V FI +++AC H G VDEG F M T Y I P IEHY C+VDLLSR
Sbjct: 599 ADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSR 658
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
+ + +A EFI+ MPIKP+ +W ++L CR +++ AE SR++ +L+P + GY ++
Sbjct: 659 SQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILA 718
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
SN YA +W+ V+ +RK +++ + K PG+S I V VH F +GD++ PQ+E I++
Sbjct: 719 SNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSL 778
Query: 250 EKLLDGMKLKGYIPNTSVVLLDI-EEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKN 308
E L M +GYIP+ V ++ EE+EK + + HSE+LA+ FGL+NT PGTP+++MKN
Sbjct: 779 EILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKN 838
Query: 309 LRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
LRVC DCH KLIS+IV REI+VRD NRFH F+ G+CSC D W
Sbjct: 839 LRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 124/285 (43%), Gaps = 52/285 (18%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V+E GF ++ V N L+DMY + G L AR+VF EM R + +W+++I G + HG
Sbjct: 128 VYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGY 187
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG--------------------- 100
+EAL ++++ I P+ T +L A G++ V +G
Sbjct: 188 YEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNG 247
Query: 101 --------------RRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE-FIRNMP- 144
RR F M + Y M+ + ++E+ F+ N+
Sbjct: 248 LVAMYLKFRRPTDARRVFDEMDVRDSV-----SYNTMICGYLKLEMVEESVRMFLENLDQ 302
Query: 145 IKPNGVVWGALLGGCRVHKNIDLAEEA-SRQLDQLDPLNNGYHVVLSNIYAEAERWEDVA 203
KP+ + ++L C +++ LA+ + L L + +L ++YA + D+
Sbjct: 303 FKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYA---KCGDMI 359
Query: 204 RVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQM 248
R + ++ K T W+SI + G + +GD +A K+F+M
Sbjct: 360 TARDVFNSMECKDTVSWNSI-ISGYIQ---SGDLM--EAMKLFKM 398
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 77/158 (48%), Gaps = 2/158 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
++ Y ++GF V N LID+Y KCG + AR VF ME + +W+++I G G
Sbjct: 329 IYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGD 388
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
EA+ F M+ + + + +T++ L+ + + G+ +S + GI +
Sbjct: 389 LMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKG-LHSNGIKSGICIDLSVSN 447
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC 159
++D+ ++ G + ++ + +M + V W ++ C
Sbjct: 448 ALIDMYAKCGEVGDSLKIFSSMGTG-DTVTWNTVISAC 484
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 9/179 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYV----KCGCLEGARRVFIEMEERTVFTWSAMIQGL 56
R+H G + LID Y L RRV + V+ W+++I+
Sbjct: 25 RIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRV---SPAKNVYLWNSIIRAF 81
Query: 57 AIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ 116
+ +G EAL + K+ E + P+ TF ++ AC + + G Y + G
Sbjct: 82 SKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMG-DLVYEQILDMGFESD 140
Query: 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175
+ +VD+ SR G L A + MP++ + V W +L+ G H + A E +L
Sbjct: 141 LFVGNALVDMYSRMGLLTRARQVFDEMPVR-DLVSWNSLISGYSSHGYYEEALEIYHEL 198
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 67/155 (43%), Gaps = 2/155 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H +SG ++ V N LIDMY KCG + + ++F M TW+ +I G
Sbjct: 430 LHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGD 489
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
L +M + + P+ TF+ L C + G+ + +G +++
Sbjct: 490 FATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKE-IHCCLLRFGYESELQIGN 548
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
++++ S+ G L+ + M + + V W ++
Sbjct: 549 ALIEMYSKCGCLENSSRVFERMS-RRDVVTWTGMI 582
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 338 bits (867), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 157/353 (44%), Positives = 234/353 (66%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + +SG N+ + L+DMY KCG ++ A +VF EM +R +W+A+I A +G
Sbjct: 473 QLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNG 532
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ A+ +F KMIE G++P+ V+ +G+L AC H G+V++G +F +M+ YGI P+ +HY
Sbjct: 533 DGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHY 592
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DLL R G EA + + MP +P+ ++W ++L CR+HKN LAE A+ +L ++
Sbjct: 593 ACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEK 652
Query: 181 LNNGY-HVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
L + +V +SNIYA A WE V V+K MR G+KK P +S + V+ +H F + D+TH
Sbjct: 653 LRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTH 712
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P ++I + +L ++ +GY P+TS V+ D++E+ K + L HSE+LA+ F L++TP
Sbjct: 713 PNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPE 772
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PI +MKNLR C DCHAA KLIS+IV REI VRD +RFH F G CSCGDYW
Sbjct: 773 GCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 2/144 (1%)
Query: 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
+ V N+L+DMY KC E A +F + +RT +W+A+I G G L F KM
Sbjct: 386 LHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRG 445
Query: 75 IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ 134
++ + TF +L A + G++ ++ G + + +VD+ ++ G ++
Sbjct: 446 SNLRADQSTFATVLKASASFASLLLGKQ-LHAFIIRSGNLENVFSGSGLVDMYAKCGSIK 504
Query: 135 EAYEFIRNMPIKPNGVVWGALLGG 158
+A + MP + N V W AL+
Sbjct: 505 DAVQVFEEMPDR-NAVSWNALISA 527
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 4/159 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S +GF R+ V N ++D Y K + R +F EM E +++ +I +
Sbjct: 271 QLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQAD 330
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q + +L F +M +G F +L ++ + GR+ I H
Sbjct: 331 QYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQAL--LATADSILHV 388
Query: 121 G-CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
G +VD+ ++ +EA +++P + V W AL+ G
Sbjct: 389 GNSLVDMYAKCEMFEEAELIFKSLPQRTT-VSWTALISG 426
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+N NT+I +VK G + AR +F M +RTV TW+ ++ A + EA F +M
Sbjct: 77 KNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQM 136
Query: 73 IEIG--IKPNGVTFIGLLHAC 91
P+ VTF LL C
Sbjct: 137 CRSSSCTLPDHVTFTTLLPGC 157
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 337 bits (864), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 172/356 (48%), Positives = 234/356 (65%), Gaps = 8/356 (2%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE-RTVFTWSAMIQGLAIHG 60
+H + ++G+ + V N LIDMY +CG + AR VF M+E R + +W++MI GLA+HG
Sbjct: 291 LHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHG 350
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q +EA+ FN+M G+ P+G++FI LLHAC H G ++EG +F M Y I P+IEHY
Sbjct: 351 QGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHY 410
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
GCMVDL R+G LQ+AY+FI MPI P +VW LLG C H NI+LAE+ ++L++LDP
Sbjct: 411 GCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDP 470
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH- 239
N+G V+LSN YA A +W+DVA +RK M +KKT WS + V +++F AG++
Sbjct: 471 NNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKG 530
Query: 240 ---PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMN 296
EK+ ++ +L D GY P + L D+EE+EKE + +HSEKLAL F L
Sbjct: 531 IDIEAHEKLKEIILRLKDE---AGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALAR 587
Query: 297 TPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G IRI+KNLR+C DCHA KL S++ EI+VRDRNRFH F+ GSCSC DYW
Sbjct: 588 LSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 4/166 (2%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN N ++ Y+K G LE A+R+F EM R +WS MI G+A +G E+ F ++
Sbjct: 201 RNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFREL 260
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
G+ PN V+ G+L AC G + G + + + G + ++D+ SR G
Sbjct: 261 QRAGMSPNEVSLTGVLSACSQSGSFEFG-KILHGFVEKAGYSWIVSVNNALIDMYSRCGN 319
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ A M K V W +++ G +H EEA R +++
Sbjct: 320 VPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQ---GEEAVRLFNEM 362
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 12/162 (7%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G ++ V TLI MY CGC+E AR+VF EM + + W+A+I
Sbjct: 127 QMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGN 186
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
A F+KM+ V G + A G ++ +R F M + +
Sbjct: 187 DVAGAREIFDKMLVRNHTSWNVMLAGYIKA----GELESAKRIFSEMPHRDDV-----SW 237
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGC 159
M+ ++ G E++ + R + + PN V +L C
Sbjct: 238 STMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSAC 279
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 335 bits (859), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 160/357 (44%), Positives = 227/357 (63%), Gaps = 8/357 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH GF + + N LIDMY KC + A+ +F M R V +W+++I G+A HG
Sbjct: 259 QVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHG 318
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
QA++AL ++ M+ G+KPN VTF+GL++AC H+G+V++GR F SMT +YGI P ++HY
Sbjct: 319 QAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHY 378
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC----RVHKNIDLAEEASRQLD 176
C++DLL R+G L EA I MP P+ W ALL C R I +A+
Sbjct: 379 TCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFK 438
Query: 177 QLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGD 236
DP +++LSNIYA A W V+ R+ + + V+K PG SS+ V F AG+
Sbjct: 439 LKDP---STYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGE 495
Query: 237 ETHPQAEKIFQMWEKLLDGMKLK-GYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLM 295
+HP E IF++ +KL + M+++ GY+P+TS +L D++E+EKEK L+ HSE+ A+ +GL+
Sbjct: 496 TSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLL 555
Query: 296 NTPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PGTPIRI+KNLRVC DCH K ISEI REI+VRD R+H F+ G CSC D+W
Sbjct: 556 KAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDFW 612
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 5/159 (3%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGL-AIHG 60
+H + + G + + NTL+++Y KCG A +VF EM R W++++ L +
Sbjct: 25 LHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANL 84
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEH 119
K + G++P+ F L+ AC ++G +D GR+ + + +EY ++
Sbjct: 85 SGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVK- 143
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+VD+ ++ G L A ++ +K N + W A++ G
Sbjct: 144 -SSLVDMYAKCGLLNSAKAVFDSIRVK-NTISWTAMVSG 180
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
V EY+N + ++L+DMY KCG L A+ VF + + +W+AM+ G A G+
Sbjct: 133 VSEYANDEVVK------SSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGR 186
Query: 62 AKEALTSF 69
+EAL F
Sbjct: 187 KEEALELF 194
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 334 bits (857), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 153/354 (43%), Positives = 230/354 (64%), Gaps = 2/354 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH++ +++G + + NTL+ MY +CG ++ A +VF M ER V +W+A+I GLA++G
Sbjct: 238 QVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNG 297
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTT-EYGIIPQIEH 119
KEA+ +FN+M++ GI P T GLL AC H G V EG FF M + E+ I P + H
Sbjct: 298 FGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHH 357
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
YGC+VDLL RA L +AY I++M +KP+ +W LLG CRVH +++L E L +L
Sbjct: 358 YGCVVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELK 417
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
G +V+L N Y+ +WE V +R LM+ + PG S+I + G VHEF+ D +H
Sbjct: 418 AEEAGDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSH 477
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYR-HSEKLALTFGLMNTP 298
P+ E+I++M ++ +K+ GY+ + L ++E +E++ + R HSEKLA+ FG++ TP
Sbjct: 478 PRKEEIYKMLAEINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTP 537
Query: 299 PGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PGT IR+ KNLR C DCH K +S++ +R ++VRDR+RFH F+ GSCSC D+W
Sbjct: 538 PGTTIRVTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 5/161 (3%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H GF + + TL+D+Y C A +VF E+ +R +W+ + +
Sbjct: 134 QIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNK 193
Query: 61 QAKEALTSFNKM---IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
+ ++ L F+KM ++ +KP+GVT + L AC ++G +D G++ + E G+ +
Sbjct: 194 RTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQ-VHDFIDENGLSGAL 252
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG 158
+V + SR G + +AY+ M + N V W AL+ G
Sbjct: 253 NLSNTLVSMYSRCGSMDKAYQVFYGMR-ERNVVSWTALISG 292
>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080
OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
Length = 650
Score = 334 bits (857), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 166/353 (47%), Positives = 227/353 (64%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H + + G + V ++LI MY KCGCL A + F E E+ WS+MI HG
Sbjct: 298 QIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHG 357
Query: 61 QAKEALTSFNKMIE-IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
Q EA+ FN M E ++ N V F+ LL+AC H G D+G F M +YG P ++H
Sbjct: 358 QGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKH 417
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179
Y C+VDLL RAG L +A IR+MPIK + V+W LL C +HKN ++A+ +++ Q+D
Sbjct: 418 YTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQID 477
Query: 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETH 239
P ++ +V+L+N++A A+RW DV+ VRK MR+ VKK G S G VH+F GD +
Sbjct: 478 PNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQ 537
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
++++I+ ++L MKLKGY P+T+ VL D++E+EKE L +HSEKLA+ F LM P
Sbjct: 538 SKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPE 597
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIRI+KNLRVC DCH AFK IS I NREI +RD +RFH F G CSCGDYW
Sbjct: 598 GAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 650
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 2/147 (1%)
Query: 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71
++N N LI+ YV+ G L AR+VF EM +R + TW+AMI GL +E L+ F +
Sbjct: 107 KKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFRE 166
Query: 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131
M +G P+ T + + V G++ + T +YG+ + + + R G
Sbjct: 167 MHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQ-IHGYTIKYGLELDLVVNSSLAHMYMRNG 225
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGG 158
LQ+ IR+MP++ N V W L+ G
Sbjct: 226 KLQDGEIVIRSMPVR-NLVAWNTLIMG 251
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 89/190 (46%), Gaps = 10/190 (5%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H Y+ + G ++ V ++L MY++ G L+ V M R + W+ +I G A +G
Sbjct: 197 QIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNG 256
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ L + M G +PN +TF+ +L +C + +G++ ++ + G +
Sbjct: 257 CPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQ-IHAEAIKIGASSVVAVV 315
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNID--------LAEEAS 172
++ + S+ G L +A + + V+W +++ H D +AE+ +
Sbjct: 316 SSLISMYSKCGCLGDAAKAFSERE-DEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTN 374
Query: 173 RQLDQLDPLN 182
+++++ LN
Sbjct: 375 MEINEVAFLN 384
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 334 bits (856), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 166/356 (46%), Positives = 234/356 (65%), Gaps = 4/356 (1%)
Query: 1 RVHEYSNQSGFRRN--IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAI 58
R + + +SG+ + + + + LIDMY KCG +E A VF+ M + VFT+S+MI GLA
Sbjct: 302 RAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLAT 361
Query: 59 HGQAKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117
HG+A+EAL F+ M+ + IKPN VTF+G L AC H G VD+GR+ F SM +G+ P
Sbjct: 362 HGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTR 421
Query: 118 EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177
+HY CMVDLL R G LQEA E I+ M ++P+G VWGALLG CR+H N ++AE A+ L +
Sbjct: 422 DHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFE 481
Query: 178 LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWS-SITVDGVVHEFVAGD 236
L+P G +++LSN+YA A W V RVRKL++ G+KKTP S + +G +H+F G+
Sbjct: 482 LEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGN 541
Query: 237 ETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMN 296
HP + KI E+L++ + + GY P+ S V D+ + K L +H+EKLAL F L+
Sbjct: 542 LNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLT 601
Query: 297 TPPGTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T + I IMKNLR+C DCH +L SE+ + I++RD RFH F++G CSCGD+W
Sbjct: 602 TNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 33/180 (18%)
Query: 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWS------------------------ 50
+ V NT+IDMYVKC ++ AR+VF EM ER V +W+
Sbjct: 184 VYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPT 243
Query: 51 -------AMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF 103
AM+ G A + + +EAL F++M + GI+ + VT G + AC +G R
Sbjct: 244 KDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRA 303
Query: 104 F-YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
+ + Y + ++D+ S+ G ++EA +M K N + +++ G H
Sbjct: 304 VQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNK-NVFTYSSMILGLATH 362
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 33/190 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEG--ARRVFIEMEERTVFTWSAMIQGLAI 58
++H + + G ++ + LI K G ARRV ++ R F W+A+I+G AI
Sbjct: 67 QIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVIRGYAI 126
Query: 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRR------------FFYS 106
G+ EA+ + M + I P TF LL ACG M ++ GR+ F Y
Sbjct: 127 EGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVYV 186
Query: 107 MTTEYGIIPQIEHYGC------------------MVDLLSRAGFLQEAYEFIRNMPIKPN 148
T + + E C ++ +R G ++ A E ++P K +
Sbjct: 187 GNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTK-D 245
Query: 149 GVVWGALLGG 158
V W A++ G
Sbjct: 246 MVAWTAMVTG 255
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 333 bits (853), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 164/336 (48%), Positives = 215/336 (63%), Gaps = 2/336 (0%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM-IEIGI 77
N+LIDMY KCG L ARR+F M ERT +W+AM+ G + HG +E L F M E +
Sbjct: 293 NSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRV 352
Query: 78 KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTT-EYGIIPQIEHYGCMVDLLSRAGFLQEA 136
KP+ VT + +L C H D G F M EYG P EHYGC+VD+L RAG + EA
Sbjct: 353 KPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEA 412
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
+EFI+ MP KP V G+LLG CRVH ++D+ E R+L +++P N G +V+LSN+YA A
Sbjct: 413 FEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASA 472
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGM 256
RW DV VR +M V K PG S I + +H F A D THP+ E++ +++ M
Sbjct: 473 GRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKM 532
Query: 257 KLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCH 316
K GY+P+ S VL D++E++KEK L HSEKLALTFGL+ T G PIR+ KNLR+C DCH
Sbjct: 533 KQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCH 592
Query: 317 AAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
K+ S++ RE+ +RD+NRFH G CSCGDYW
Sbjct: 593 NFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 90/178 (50%), Gaps = 5/178 (2%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
RVH + ++ + + L+ Y KC CLE AR+V EM E+ V +W+AMI + G
Sbjct: 73 RVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTG 132
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+ EALT F +M+ KPN TF +L +C + G++ + + ++ I
Sbjct: 133 HSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQ-IHGLIVKWNYDSHIFVG 191
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
++D+ ++AG ++EA E +P + + V A++ G + + L EEA +L
Sbjct: 192 SSLLDMYAKAGQIKEAREIFECLPER-DVVSCTAIIAG---YAQLGLDEEALEMFHRL 245
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 81/153 (52%), Gaps = 4/153 (2%)
Query: 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFN 70
+ +I V ++L+DMY K G ++ AR +F + ER V + +A+I G A G +EAL F+
Sbjct: 184 YDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFH 243
Query: 71 KMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLLSR 129
++ G+ PN VT+ LL A + +D G++ + + E +++ ++D+ S+
Sbjct: 244 RLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQN--SLIDMYSK 301
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162
G L A NMP + + W A+L G H
Sbjct: 302 CGNLSYARRLFDNMPER-TAISWNAMLVGYSKH 333
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 332 bits (852), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 155/336 (46%), Positives = 218/336 (64%)
Query: 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76
V N LIDMY KCG + AR VF M + TW++++ G +HG +EAL F++M IG
Sbjct: 515 VSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIG 574
Query: 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136
K +GVT + +L+AC H G +D+G +F M T +G+ P EHY C+VDLL RAG L A
Sbjct: 575 FKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAA 634
Query: 137 YEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA 196
I MP++P VVW A L CR+H ++L E A+ ++ +L ++G + +LSN+YA A
Sbjct: 635 LRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANA 694
Query: 197 ERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGM 256
RW+DV R+R LMR+ GVKK PG S + F GD+THP A++I+Q+ + +
Sbjct: 695 GRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRI 754
Query: 257 KLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCH 316
K GY+P T L D++++EK+ L+ HSEKLAL +G++ TP G IRI KNLRVC DCH
Sbjct: 755 KDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCH 814
Query: 317 AAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
AF +S I++ +I++RD +RFH F+ GSCSC YW
Sbjct: 815 TAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
H S +GF N+ V N L+ MY +C L AR+VF EM V +W+++I+ A G+
Sbjct: 149 AHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGK 208
Query: 62 AKEALTSFNKMI-EIGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEH 119
K AL F++M E G +P+ +T + +L C +G G++ +++T+E +I +
Sbjct: 209 PKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSE--MIQNMFV 266
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
C+VD+ ++ G + EA NM +K + V W A++ G + I E+A R +++
Sbjct: 267 GNCLVDMYAKCGMMDEANTVFSNMSVK-DVVSWNAMVAG---YSQIGRFEDAVRLFEKM 321
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 10/167 (5%)
Query: 17 VCNTLIDMYVKCGCLEGARRVF--IEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
V N LIDMY KC ++ AR +F + +ER V TW+ MI G + HG A +AL ++M E
Sbjct: 409 VINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFE 468
Query: 75 --IGIKPNGVTFIGLLHACGHMGWVDEGRRFF-YSMTTEYGIIPQIEHYGCMVDLLSRAG 131
+PN T L AC + + G++ Y++ + +P C++D+ ++ G
Sbjct: 469 EDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVS-NCLIDMYAKCG 527
Query: 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178
+ +A NM K N V W +L+ G +H EEA D++
Sbjct: 528 SISDARLVFDNMMAK-NEVTWTSLMTGYGMH---GYGEEALGIFDEM 570
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 93/222 (41%), Gaps = 44/222 (19%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEM------------------- 41
++H ++ S +N+ V N L+DMY KCG ++ A VF M
Sbjct: 250 QLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIG 309
Query: 42 -------------EERT---VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFI 85
EE+ V TWSA I G A G EAL +M+ GIKPN VT I
Sbjct: 310 RFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLI 369
Query: 86 GLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG-------CMVDLLSRAGFLQEAYE 138
+L C +G + G+ + +Y I + +G ++D+ ++ + A
Sbjct: 370 SVLSGCASVGALMHGKE-IHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARA 428
Query: 139 FIRNMPIKPNGVV-WGALLGGCRVHKNIDLAEEASRQLDQLD 179
++ K VV W ++GG H + + A E ++ + D
Sbjct: 429 MFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEED 470
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 331 bits (849), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 154/352 (43%), Positives = 230/352 (65%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH Y + GF ++L+DMY KCG +E A+ V + + +W+++I G A +G
Sbjct: 340 QVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNG 399
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
Q EAL F+ +++ G KP+ VTF+ +L AC H G V++G FFYS+T ++ + +HY
Sbjct: 400 QPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHY 459
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C+VDLL+R+G ++ I MP+KP+ +W ++LGGC + NIDLAEEA+++L +++P
Sbjct: 460 TCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEP 519
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
N +V ++NIYA A +WE+ ++RK M+ +GV K PG S + H F+A D +HP
Sbjct: 520 ENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHP 579
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
+I + +L MK +GY+P TS+VL D+E+++KE+ L HSEKLA+ F +++T G
Sbjct: 580 MYNQIVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEG 639
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T I++ KNLR C DCH A K IS I R+I VRD RFHCF+ G CSCGDYW
Sbjct: 640 TAIKVFKNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 103/196 (52%), Gaps = 10/196 (5%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
+H + ++G + + ++L+DMY KCGC++ AR +F ++ E+ V +W++MI +
Sbjct: 240 IHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSR 299
Query: 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121
+E + F++++ +PN TF G+L+AC + + G++ + T G P
Sbjct: 300 WREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQ-VHGYMTRVGFDPYSFASS 358
Query: 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181
+VD+ ++ G ++ A + P KP+ V W +L+GGC + D EA + D L L
Sbjct: 359 SLVDMYTKCGNIESAKHVVDGCP-KPDLVSWTSLIGGCAQNGQPD---EALKYFDLL--L 412
Query: 182 NNGY---HVVLSNIYA 194
+G HV N+ +
Sbjct: 413 KSGTKPDHVTFVNVLS 428
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VHE+ SGF I + N L+ MY KCG L AR+VF EM R + +W+ M+ G A G
Sbjct: 106 KVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVG 165
Query: 61 QAKEALTSFNKMIE 74
+EA F++M E
Sbjct: 166 LLEEARKLFDEMTE 179
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 330 bits (846), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 165/353 (46%), Positives = 223/353 (63%), Gaps = 1/353 (0%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+VH + + F ++ V + L+ MYVKCG L A+ VF + + W+++I G A HG
Sbjct: 352 QVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHG 411
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F++M G PN VT I +L AC + G ++EG F SM +++ + P +EHY
Sbjct: 412 LGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHY 471
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
C VD+L RAG + +A E I +M IKP+ VWGALLG C+ H +DLAE A+++L + +P
Sbjct: 472 SCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEP 531
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGD-ETH 239
N G +V+LS+I A +W DVA VRK MR V K PG S I V VH F G + H
Sbjct: 532 DNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNH 591
Query: 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPP 299
P+ I M EK ++ GY P+ S VL D++E+EK L RHSE+LA+ +GL+ P
Sbjct: 592 PEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPE 651
Query: 300 GTPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
G PIR+MKNLRVC DCHAA KLIS++ REI++RD NRFH F G CSC DYW
Sbjct: 652 GVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 14/168 (8%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ N L+ Y+K + AR VF M ER V +W+AM++G G EA + F +M
Sbjct: 77 RNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRM 136
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
E V F GL+ G +D+ R+ + M + + M+ L R G
Sbjct: 137 PERNEVSWTVMFGGLIDD----GRIDKARKLYDMMP-----VKDVVASTNMIGGLCREGR 187
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
+ EA M + N V W ++ G R + +D+A R+L ++ P
Sbjct: 188 VDEARLIFDEMR-ERNVVTWTTMITGYRQNNRVDVA----RKLFEVMP 230
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%)
Query: 18 CNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGI 77
CN +I + + G + ARRVF ME+R TW MI+ G EAL F +M + G+
Sbjct: 268 CNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGV 327
Query: 78 KPNGVTFIGLLHACGHMGWVDEGRR 102
+P+ + I +L C + + GR+
Sbjct: 328 RPSFPSLISILSVCATLASLQYGRQ 352
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/264 (20%), Positives = 105/264 (39%), Gaps = 30/264 (11%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN+ T+I Y + ++ AR++F M E+T +W++M+ G + G+ ++A F M
Sbjct: 201 RNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVM 260
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
+ +G G +G + + RR F M + M+ R GF
Sbjct: 261 PMKPVIACNAMIVGF----GEVGEISKARRVFDLMEDRDNAT-----WRGMIKAYERKGF 311
Query: 133 LQEAYEFIRNMP---IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGY-HVV 188
EA + M ++P+ ++L C ++ + L + ++ Y V
Sbjct: 312 ELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASV 371
Query: 189 LSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQM 248
L +Y + ++ + + + K W+SI ++G +H E+
Sbjct: 372 LMTMYVKC---GELVKAKLVFDRFSSKDIIMWNSI---------ISGYASHGLGEEAL-- 417
Query: 249 WEKLLDGMKLKGYIPNTSVVLLDI 272
K+ M G +PN V L+ I
Sbjct: 418 --KIFHEMPSSGTMPN-KVTLIAI 438
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 99/251 (39%), Gaps = 20/251 (7%)
Query: 18 CNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGI 77
C+ I + G + AR+ F ++ + + +W++++ G +G KEA F++M E
Sbjct: 20 CSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSE--- 76
Query: 78 KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAY 137
N V++ GL+ + E R F M + + MV + G + EA
Sbjct: 77 -RNVVSWNGLVSGYIKNRMIVEARNVFELMPER-----NVVSWTAMVKGYMQEGMVGEAE 130
Query: 138 EFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAE 197
MP + N V W + GG ID A R+L + P+ + V +N+
Sbjct: 131 SLFWRMP-ERNEVSWTVMFGGLIDDGRIDKA----RKLYDMMPVKD--VVASTNMIGGLC 183
Query: 198 RWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEF---VAGDETHPQAEKIFQMWEKLLD 254
R V R + + + W+++ + G VA EK W +L
Sbjct: 184 REGRVDEARLIFDEMRERNVVTWTTM-ITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLL 242
Query: 255 GMKLKGYIPNT 265
G L G I +
Sbjct: 243 GYTLSGRIEDA 253
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 330 bits (845), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 158/352 (44%), Positives = 225/352 (63%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
+ H + SG + V N+L+ +Y KCG ++ + R+F EM R +W+AM+ A G
Sbjct: 392 QFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFG 451
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A E + F+KM++ G+KP+GVT G++ AC G V++G+R+F MT+EYGI+P I HY
Sbjct: 452 RAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHY 511
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180
CM+DL SR+G L+EA FI MP P+ + W LL CR N+++ + A+ L +LDP
Sbjct: 512 SCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDP 571
Query: 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240
+ + +LS+IYA +W+ VA++R+ MR VKK PG S I G +H F A DE+ P
Sbjct: 572 HHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSP 631
Query: 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPG 300
++I+ E+L + + GY P+TS V D+EE K K L HSE+LA+ FGL+ P G
Sbjct: 632 YLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSG 691
Query: 301 TPIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
PIR+ KNLRVC DCH A K IS + REI+VRD RFH F+ G+CSCGD+W
Sbjct: 692 QPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 83/156 (53%), Gaps = 2/156 (1%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H ++ F+ +I V + LIDMY KC CL A+ VF M+++ V +W+AM+ G G
Sbjct: 291 QIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTG 350
Query: 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+A+EA+ F M GI P+ T + AC ++ ++EG +F T G+I +
Sbjct: 351 RAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITS-GLIHYVTVS 409
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL 156
+V L + G + ++ M ++ + V W A++
Sbjct: 410 NSLVTLYGKCGDIDDSTRLFNEMNVR-DAVSWTAMV 444
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 88/173 (50%), Gaps = 11/173 (6%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
RN + N+L+ + CG +E A ++F ME+ +V +W+AMI+GLA +G AKEA+ F +M
Sbjct: 203 RNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSV-SWAAMIKGLAQNGLAKEAIECFREM 261
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132
G+K + F +L ACG +G ++EG++ ++ I ++D+ +
Sbjct: 262 KVQGLKMDQYPFGSVLPACGGLGAINEGKQ-IHACIIRTNFQDHIYVGSALIDMYCKCKC 320
Query: 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASR-----QLDQLDP 180
L A M K N V W A++ G + AEEA + Q +DP
Sbjct: 321 LHYAKTVFDRMKQK-NVVSWTAMVVG---YGQTGRAEEAVKIFLDMQRSGIDP 369
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/181 (18%), Positives = 71/181 (39%), Gaps = 43/181 (23%)
Query: 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM- 72
N+ N L+ Y K G + F ++ +R TW+ +I+G ++ G A+ ++N M
Sbjct: 71 NLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 130
Query: 73 -----------------------------------IEIGIKPNGVTFIGLLHACGHMGWV 97
I++G + + LL+ ++G +
Sbjct: 131 RDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCI 190
Query: 98 DEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG 157
+ ++ FY + ++ Y ++ L G +++A + R M + + V W A++
Sbjct: 191 SDAKKVFYGLDDRNTVM-----YNSLMGGLLACGMIEDALQLFRGM--EKDSVSWAAMIK 243
Query: 158 G 158
G
Sbjct: 244 G 244
>sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950
OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1
Length = 995
Score = 330 bits (845), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 164/355 (46%), Positives = 233/355 (65%), Gaps = 4/355 (1%)
Query: 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ 61
VH S ++ ++ V + L+DMY KCG L+ A R F M R ++W++MI G A HGQ
Sbjct: 641 VHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQ 700
Query: 62 AKEALTSFNKM-IEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120
+EAL F M ++ P+ VTF+G+L AC H G ++EG + F SM+ YG+ P+IEH+
Sbjct: 701 GEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHF 760
Query: 121 GCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGC-RVH-KNIDLAEEASRQLDQL 178
CM D+L RAG L + +FI MP+KPN ++W +LG C R + + +L ++A+ L QL
Sbjct: 761 SCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQL 820
Query: 179 DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDET 238
+P N +V+L N+YA RWED+ + RK M++ VKK G+S +T+ VH FVAGD++
Sbjct: 821 EPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKS 880
Query: 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTP 298
HP A+ I++ ++L M+ GY+P T L D+E++ KE+ L HSEKLA+ F L
Sbjct: 881 HPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQR 940
Query: 299 PGT-PIRIMKNLRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
T PIRIMKNLRVC DCH+AFK IS+I R+I++RD NRFH FQ G+CSC D+W
Sbjct: 941 SSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74
+ + N L++MY KCG + ARRVF M ++ +W++MI GL +G EA+ + M
Sbjct: 349 VGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRR 408
Query: 75 IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ 134
I P T I L +C + W G++ + + + GI + ++ L + G+L
Sbjct: 409 HDILPGSFTLISSLSSCASLKWAKLGQQ-IHGESLKLGIDLNVSVSNALMTLYAETGYLN 467
Query: 135 EAYEFIRNMPIKPNGVVWGALLGG 158
E + +MP + + V W +++G
Sbjct: 468 ECRKIFSSMP-EHDQVSWNSIIGA 490
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM 72
+++ +CN LI+ Y++ G AR+VF EM R +W+ ++ G + +G+ KEAL M
Sbjct: 34 KDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDM 93
Query: 73 IEIGIKPNGVTFIGLLHACGHMGWV 97
++ GI N F+ +L AC +G V
Sbjct: 94 VKEGIFSNQYAFVSVLRACQEIGSV 118
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/336 (20%), Positives = 133/336 (39%), Gaps = 60/336 (17%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHG 60
++H S + G N+ V N L+ +Y + G L R++F M E +W+++I LA
Sbjct: 436 QIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSE 495
Query: 61 QA-KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119
++ EA+ F G K N +TF +L A + + + G++ + + + I +
Sbjct: 496 RSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQ-IHGLALKNNIADEATT 554
Query: 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH-----KNIDLA---EEA 171
++ + G + + M + + V W +++ G +H K +DL +
Sbjct: 555 ENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISG-YIHNELLAKALDLVWFMLQT 613
Query: 172 SRQLD------------QLDPLNNGYHV-----------------VLSNIYAEAERWEDV 202
++LD + L G V L ++Y++ R +
Sbjct: 614 GQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYA 673
Query: 203 ARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYI 262
R + V+ + W+S+ ++G H Q E+ KL + MKL G
Sbjct: 674 LR---FFNTMPVRNSYSWNSM---------ISGYARHGQGEEAL----KLFETMKLDGQT 717
Query: 263 PNTSVVLLDIEEKEKEKFL----YRHSEKLALTFGL 294
P V + + L ++H E ++ ++GL
Sbjct: 718 PPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGL 753
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 100/262 (38%), Gaps = 56/262 (21%)
Query: 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALT 67
+SG ++ V + L+ + K G L AR+VF +ME R T + ++ GL +EA
Sbjct: 236 KSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATK 295
Query: 68 SF---NKMI---------------------EIGIKPNG-----------VTFI-----GL 87
F N MI E+G+K V F+ GL
Sbjct: 296 LFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGL 355
Query: 88 LHACGHMGWVDEGRRFFYSMTTEYGI-----IPQIEHYGCMVDLLSRAGFLQEAYEFIRN 142
++ G + + RR FY MT + + I ++ GC ++ + R Y+ +R
Sbjct: 356 VNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVER-------YKSMRR 408
Query: 143 MPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD-PLNNGYHVVLSNIYAEAERWED 201
I P + L C K L ++ + +L LN L +YAE +
Sbjct: 409 HDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNE 468
Query: 202 VARVRKLMRNLGVKKTPGWSSI 223
RK+ ++ W+SI
Sbjct: 469 ---CRKIFSSMPEHDQVSWNSI 487
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 328 bits (842), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 158/344 (45%), Positives = 224/344 (65%), Gaps = 1/344 (0%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSF 69
GF ++ N LI MY KCG +E AR+VF M +W+A+I L HG EA+ +
Sbjct: 447 GFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVY 506
Query: 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129
+M++ GI+P+ +T + +L AC H G VD+GR++F SM T Y I P +HY ++DLL R
Sbjct: 507 EEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCR 566
Query: 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189
+G +A I ++P KP +W ALL GCRVH N++L A+ +L L P ++G +++L
Sbjct: 567 SGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLL 626
Query: 190 SNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMW 249
SN++A +WE+VARVRKLMR+ GVKK S I ++ VH F+ D +HP+AE ++
Sbjct: 627 SNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYL 686
Query: 250 EKLLDGMKLKGYIPNTSVVLLDIE-EKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKN 308
+ L M+ GY+P+TS VL D+E + KE L HSEK+A+ FGLM PPGT IRI KN
Sbjct: 687 QDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKN 746
Query: 309 LRVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352
LR C DCH F+ +S +V R+I++RDR RFH F+ G CSCG++W
Sbjct: 747 LRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 6/156 (3%)
Query: 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78
N L+ YV G + A+ +F EM+E+ + +W MI GLA +G +E L F+ M G +
Sbjct: 355 NALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFE 414
Query: 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138
P F G + +C +G G++ +++ + G + ++ + ++ G ++EA +
Sbjct: 415 PCDYAFSGAIKSCAVLGAYCNGQQ-YHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQ 473
Query: 139 FIRNMPIKPNGVVWGALLGGCRVH----KNIDLAEE 170
R MP + V W AL+ H + +D+ EE
Sbjct: 474 VFRTMPCL-DSVSWNALIAALGQHGHGAEAVDVYEE 508
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 39/194 (20%)
Query: 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGC----LEGARRVFIEMEERTVFTWS------ 50
+ H + +SG V N L+ +Y KC L AR+VF E+ E+ +W+
Sbjct: 170 QFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGY 229
Query: 51 --------------------------AMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTF 84
AMI G G +EAL +M+ GI+ + T+
Sbjct: 230 VKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTY 289
Query: 85 IGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP 144
++ AC G + G++ + ++ +V L + G EA MP
Sbjct: 290 PSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDN--SLVSLYYKCGKFDEARAIFEKMP 347
Query: 145 IKPNGVVWGALLGG 158
K + V W ALL G
Sbjct: 348 AK-DLVSWNALLSG 360
Score = 38.5 bits (88), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 42/112 (37%), Gaps = 33/112 (29%)
Query: 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE-------------------------- 43
GF+ + N LID+Y K L AR++F E+ E
Sbjct: 44 GFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVF 103
Query: 44 -------RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88
R ++AMI G + + A+ F KM G KP+ TF +L
Sbjct: 104 EKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVL 155
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,381,271
Number of Sequences: 539616
Number of extensions: 5754473
Number of successful extensions: 19985
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 134
Number of HSP's that attempted gapping in prelim test: 17068
Number of HSP's gapped (non-prelim): 1838
length of query: 352
length of database: 191,569,459
effective HSP length: 118
effective length of query: 234
effective length of database: 127,894,771
effective search space: 29927376414
effective search space used: 29927376414
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)