Query 048117
Match_columns 352
No_of_seqs 368 out of 3114
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 06:25:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048117.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048117hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 5.7E-79 1.2E-83 596.2 38.8 352 1-352 346-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 5E-74 1.1E-78 573.5 39.3 348 1-350 510-857 (857)
3 PLN03081 pentatricopeptide (PP 100.0 8.6E-46 1.9E-50 362.5 24.0 314 1-331 245-560 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 3.9E-45 8.4E-50 365.7 18.0 320 1-327 309-653 (857)
5 PLN03218 maturation of RBCL 1; 100.0 2.8E-44 6.1E-49 356.3 23.7 318 1-331 458-786 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 7.9E-43 1.7E-47 346.0 20.6 263 2-277 392-661 (1060)
7 PF14432 DYW_deaminase: DYW fa 99.9 4.3E-22 9.2E-27 147.7 7.9 99 230-342 9-116 (116)
8 PRK11788 tetratricopeptide rep 99.7 6.9E-16 1.5E-20 141.8 20.8 239 16-268 108-356 (389)
9 PRK11788 tetratricopeptide rep 99.7 2.2E-14 4.8E-19 131.8 21.9 205 13-220 139-355 (389)
10 TIGR02917 PEP_TPR_lipo putativ 99.6 3.1E-14 6.8E-19 143.9 22.3 198 13-213 599-800 (899)
11 TIGR02917 PEP_TPR_lipo putativ 99.6 6.9E-14 1.5E-18 141.4 22.4 165 46-213 533-699 (899)
12 PF13041 PPR_2: PPR repeat fam 99.6 1.5E-14 3.2E-19 91.2 7.0 50 44-93 1-50 (50)
13 KOG4422 Uncharacterized conser 99.5 2E-12 4.3E-17 112.8 14.2 206 12-222 204-437 (625)
14 KOG4318 Bicoid mRNA stability 99.4 5.2E-12 1.1E-16 118.9 16.2 244 2-274 12-280 (1088)
15 TIGR02521 type_IV_pilW type IV 99.4 2.2E-10 4.7E-15 96.8 23.8 198 14-212 30-232 (234)
16 PF13041 PPR_2: PPR repeat fam 99.4 1E-12 2.2E-17 82.7 5.9 50 79-129 1-50 (50)
17 KOG4422 Uncharacterized conser 99.3 1.2E-10 2.6E-15 101.8 17.8 205 2-211 137-384 (625)
18 PRK15174 Vi polysaccharide exp 99.3 6.3E-10 1.4E-14 108.4 24.0 194 15-211 144-346 (656)
19 TIGR00990 3a0801s09 mitochondr 99.3 2.1E-09 4.6E-14 104.6 24.3 195 15-212 331-537 (615)
20 PF13429 TPR_15: Tetratricopep 99.3 4.5E-11 9.8E-16 104.7 11.2 192 14-209 77-274 (280)
21 PRK09782 bacteriophage N4 rece 99.3 2.7E-09 6E-14 107.1 24.9 198 12-213 506-707 (987)
22 PRK15174 Vi polysaccharide exp 99.3 2.1E-09 4.4E-14 104.9 23.3 197 14-213 109-314 (656)
23 KOG4626 O-linked N-acetylgluco 99.2 3.6E-10 7.7E-15 103.1 16.3 201 7-212 277-485 (966)
24 KOG1126 DNA-binding cell divis 99.2 7.6E-10 1.6E-14 101.8 15.0 191 15-212 353-586 (638)
25 PF13429 TPR_15: Tetratricopep 99.2 1.3E-10 2.8E-15 101.8 9.7 197 14-213 43-244 (280)
26 KOG4626 O-linked N-acetylgluco 99.2 1.1E-09 2.4E-14 100.0 15.3 237 11-267 247-491 (966)
27 TIGR00990 3a0801s09 mitochondr 99.1 2.1E-08 4.4E-13 97.8 24.3 184 26-213 305-497 (615)
28 PRK09782 bacteriophage N4 rece 99.1 2.2E-08 4.7E-13 100.7 22.8 195 14-213 476-673 (987)
29 TIGR02521 type_IV_pilW type IV 99.1 3.7E-08 8.1E-13 83.0 20.8 165 45-212 30-198 (234)
30 PF12854 PPR_1: PPR repeat 99.1 2.2E-10 4.8E-15 65.1 4.4 34 9-42 1-34 (34)
31 PRK10747 putative protoheme IX 99.0 1E-07 2.2E-12 87.7 23.0 187 23-213 161-358 (398)
32 TIGR00540 hemY_coli hemY prote 99.0 5.9E-08 1.3E-12 89.7 20.1 202 17-218 155-370 (409)
33 PRK11447 cellulose synthase su 99.0 1.3E-07 2.7E-12 98.5 23.7 188 18-213 464-701 (1157)
34 PRK10049 pgaA outer membrane p 99.0 1.4E-07 3.1E-12 93.9 23.0 190 23-212 245-456 (765)
35 KOG1126 DNA-binding cell divis 99.0 3.3E-08 7.2E-13 91.3 16.2 196 13-215 419-623 (638)
36 PRK12370 invasion protein regu 98.9 2.8E-07 6.2E-12 88.4 22.8 194 11-211 290-501 (553)
37 PRK11447 cellulose synthase su 98.9 2.9E-07 6.2E-12 95.9 24.2 189 22-212 276-524 (1157)
38 PF12854 PPR_1: PPR repeat 98.9 1.7E-09 3.6E-14 61.5 4.3 32 112-143 2-33 (34)
39 PRK11189 lipoprotein NlpI; Pro 98.9 4.3E-07 9.3E-12 80.1 20.6 191 15-214 64-267 (296)
40 PRK12370 invasion protein regu 98.9 2.3E-07 5E-12 89.0 20.2 194 14-212 255-470 (553)
41 KOG1155 Anaphase-promoting com 98.9 4.4E-07 9.6E-12 80.7 19.0 201 7-211 254-494 (559)
42 KOG1070 rRNA processing protei 98.9 1E-06 2.3E-11 87.6 23.2 198 14-216 1457-1667(1710)
43 PRK14574 hmsH outer membrane p 98.8 1.3E-06 2.8E-11 86.4 21.0 186 20-208 39-228 (822)
44 PRK14574 hmsH outer membrane p 98.8 1.7E-06 3.8E-11 85.5 21.8 191 22-212 299-513 (822)
45 KOG2003 TPR repeat-containing 98.8 1.5E-06 3.2E-11 77.2 18.8 170 26-198 535-709 (840)
46 PRK10747 putative protoheme IX 98.8 1.4E-06 3.1E-11 80.2 19.8 192 12-210 184-388 (398)
47 KOG1840 Kinesin light chain [C 98.7 1.7E-06 3.7E-11 80.3 19.8 191 20-210 246-477 (508)
48 KOG1840 Kinesin light chain [C 98.7 6.8E-07 1.5E-11 82.9 16.7 235 15-253 199-477 (508)
49 PRK10049 pgaA outer membrane p 98.7 8.2E-06 1.8E-10 81.5 25.0 194 14-212 48-301 (765)
50 COG3063 PilF Tfp pilus assembl 98.7 5.4E-06 1.2E-10 67.5 17.7 163 47-214 36-204 (250)
51 TIGR00756 PPR pentatricopeptid 98.6 6.8E-08 1.5E-12 55.4 4.3 35 47-81 1-35 (35)
52 COG3071 HemY Uncharacterized e 98.6 5.6E-05 1.2E-09 66.4 23.4 198 12-212 150-390 (400)
53 PF04733 Coatomer_E: Coatomer 98.6 1.6E-06 3.4E-11 75.7 13.5 192 12-212 63-265 (290)
54 TIGR03302 OM_YfiO outer membra 98.6 1.8E-05 3.9E-10 67.3 19.8 166 45-212 32-232 (235)
55 KOG1155 Anaphase-promoting com 98.6 1.5E-05 3.1E-10 71.3 19.1 191 16-210 331-534 (559)
56 KOG1128 Uncharacterized conser 98.5 1E-05 2.2E-10 76.0 18.6 227 10-261 393-621 (777)
57 COG2956 Predicted N-acetylgluc 98.5 4.1E-05 8.9E-10 65.5 20.4 199 14-214 68-280 (389)
58 COG3063 PilF Tfp pilus assembl 98.5 6.2E-05 1.3E-09 61.5 20.6 193 17-211 37-235 (250)
59 KOG2003 TPR repeat-containing 98.5 1.6E-05 3.5E-10 70.8 18.7 182 28-212 503-689 (840)
60 TIGR00540 hemY_coli hemY prote 98.5 2.1E-05 4.6E-10 72.7 20.4 201 5-210 178-397 (409)
61 KOG1129 TPR repeat-containing 98.5 4.6E-06 1E-10 71.3 14.2 190 19-212 227-458 (478)
62 PF04733 Coatomer_E: Coatomer 98.5 4.5E-06 9.7E-11 73.0 14.6 163 14-183 101-270 (290)
63 PF13812 PPR_3: Pentatricopept 98.5 2.2E-07 4.9E-12 52.9 4.3 33 47-79 2-34 (34)
64 COG2956 Predicted N-acetylgluc 98.5 2.9E-05 6.3E-10 66.4 18.5 186 28-215 48-246 (389)
65 KOG0547 Translocase of outer m 98.5 1.9E-05 4.2E-10 71.0 17.5 189 17-210 362-564 (606)
66 KOG1125 TPR repeat-containing 98.4 1.9E-05 4.1E-10 72.4 16.8 185 25-211 295-526 (579)
67 TIGR03302 OM_YfiO outer membra 98.4 2.8E-05 6.2E-10 66.1 17.4 162 14-180 32-234 (235)
68 KOG4318 Bicoid mRNA stability 98.4 9.5E-06 2.1E-10 77.7 14.7 208 2-224 46-277 (1088)
69 KOG1173 Anaphase-promoting com 98.4 3.8E-05 8.3E-10 70.3 17.2 195 12-210 309-516 (611)
70 PF12569 NARP1: NMDA receptor- 98.4 0.0002 4.4E-09 67.4 22.6 199 15-216 38-295 (517)
71 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.7E-05 6E-10 70.4 16.0 120 21-144 175-295 (395)
72 PRK11189 lipoprotein NlpI; Pro 98.3 0.00018 3.9E-09 63.5 20.4 175 11-192 93-280 (296)
73 PF01535 PPR: PPR repeat; Int 98.3 8.4E-07 1.8E-11 49.2 3.3 31 47-77 1-31 (31)
74 PRK10370 formate-dependent nit 98.3 0.00013 2.9E-09 60.1 17.6 118 94-213 52-174 (198)
75 PRK10370 formate-dependent nit 98.3 0.00021 4.5E-09 59.0 18.6 155 20-186 21-181 (198)
76 KOG1129 TPR repeat-containing 98.3 3.4E-05 7.3E-10 66.1 13.7 159 50-212 227-387 (478)
77 COG5010 TadD Flp pilus assembl 98.3 0.00026 5.7E-09 59.0 18.5 154 50-206 70-225 (257)
78 cd05804 StaR_like StaR_like; a 98.3 0.00039 8.5E-09 63.0 21.9 192 16-211 7-214 (355)
79 PRK15359 type III secretion sy 98.3 3.9E-05 8.5E-10 59.9 13.1 117 67-189 14-132 (144)
80 PRK15179 Vi polysaccharide bio 98.2 0.00021 4.5E-09 69.8 20.6 159 45-213 85-246 (694)
81 PRK15359 type III secretion sy 98.2 6.7E-05 1.5E-09 58.5 13.9 116 35-153 13-129 (144)
82 PF12569 NARP1: NMDA receptor- 98.2 0.00059 1.3E-08 64.3 21.8 192 22-215 11-260 (517)
83 KOG2076 RNA polymerase III tra 98.2 0.00017 3.6E-09 69.6 17.6 187 22-210 287-510 (895)
84 KOG0495 HAT repeat protein [RN 98.1 0.0009 2E-08 62.7 20.9 192 15-209 516-711 (913)
85 COG3071 HemY Uncharacterized e 98.1 0.00074 1.6E-08 59.6 18.8 159 13-177 185-389 (400)
86 KOG1128 Uncharacterized conser 98.1 0.00011 2.3E-09 69.4 14.2 189 15-212 424-616 (777)
87 KOG1915 Cell cycle control pro 98.1 0.0019 4.1E-08 58.4 21.1 97 118-214 401-502 (677)
88 COG5010 TadD Flp pilus assembl 98.1 0.00025 5.4E-09 59.2 14.6 136 77-214 62-199 (257)
89 TIGR00756 PPR pentatricopeptid 98.1 9.7E-06 2.1E-10 46.1 4.6 33 185-217 2-34 (35)
90 KOG2076 RNA polymerase III tra 98.0 0.0015 3.3E-08 63.2 21.3 202 13-218 137-351 (895)
91 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00031 6.8E-09 63.7 16.2 122 84-210 172-295 (395)
92 KOG0495 HAT repeat protein [RN 98.0 0.0031 6.8E-08 59.3 22.5 194 14-212 583-782 (913)
93 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.5E-10 45.6 4.4 33 184-216 2-34 (34)
94 COG4783 Putative Zn-dependent 98.0 0.0013 2.8E-08 59.6 19.3 201 5-210 211-435 (484)
95 COG4783 Putative Zn-dependent 98.0 0.0047 1E-07 56.2 22.1 179 13-213 272-455 (484)
96 PF01535 PPR: PPR repeat; Int 98.0 6.2E-06 1.3E-10 45.6 2.5 30 16-45 1-30 (31)
97 PRK15363 pathogenicity island 98.0 0.00043 9.3E-09 53.8 13.1 96 117-212 35-132 (157)
98 KOG3081 Vesicle coat complex C 97.9 0.0028 6.1E-08 53.2 18.6 148 53-210 115-269 (299)
99 KOG1070 rRNA processing protei 97.9 0.002 4.4E-08 65.2 20.6 192 15-209 1497-1697(1710)
100 cd05804 StaR_like StaR_like; a 97.9 0.0052 1.1E-07 55.6 22.4 195 18-212 117-336 (355)
101 KOG2002 TPR-containing nuclear 97.9 0.0021 4.5E-08 62.9 19.8 196 12-212 267-481 (1018)
102 PRK14720 transcript cleavage f 97.9 0.00048 1.1E-08 68.3 16.0 216 9-247 24-282 (906)
103 KOG4340 Uncharacterized conser 97.9 0.00076 1.6E-08 57.4 14.9 204 9-219 4-214 (459)
104 TIGR02552 LcrH_SycD type III s 97.9 0.00025 5.5E-09 54.5 11.6 95 118-212 18-114 (135)
105 TIGR02552 LcrH_SycD type III s 97.9 0.0007 1.5E-08 52.0 13.5 113 68-184 5-120 (135)
106 PF08579 RPM2: Mitochondrial r 97.9 0.00026 5.6E-09 51.3 9.8 81 48-129 27-116 (120)
107 PF09976 TPR_21: Tetratricopep 97.9 0.00073 1.6E-08 52.8 13.5 123 49-174 15-143 (145)
108 cd00189 TPR Tetratricopeptide 97.9 0.00026 5.6E-09 49.7 10.0 92 120-211 3-96 (100)
109 PRK15179 Vi polysaccharide bio 97.8 0.0012 2.7E-08 64.5 17.4 143 11-157 82-230 (694)
110 KOG2002 TPR-containing nuclear 97.8 0.00066 1.4E-08 66.2 15.1 182 29-212 544-745 (1018)
111 PF10037 MRP-S27: Mitochondria 97.8 0.00028 6.1E-09 64.4 12.0 120 10-130 61-186 (429)
112 PF06239 ECSIT: Evolutionarily 97.8 0.00031 6.8E-09 57.2 10.6 98 34-132 33-153 (228)
113 PF10037 MRP-S27: Mitochondria 97.8 0.00017 3.6E-09 65.8 10.0 122 75-196 60-186 (429)
114 KOG1915 Cell cycle control pro 97.8 0.0019 4.1E-08 58.4 16.1 182 27-212 85-273 (677)
115 KOG2047 mRNA splicing factor [ 97.8 0.00061 1.3E-08 63.6 13.3 169 4-176 233-452 (835)
116 PLN02789 farnesyltranstransfer 97.8 0.0088 1.9E-07 53.2 20.3 193 16-211 38-249 (320)
117 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00087 1.9E-08 50.0 12.1 99 85-183 6-110 (119)
118 PLN02789 farnesyltranstransfer 97.7 0.013 2.9E-07 52.0 20.9 193 15-210 71-300 (320)
119 KOG4340 Uncharacterized conser 97.7 0.00096 2.1E-08 56.8 12.5 177 28-208 125-335 (459)
120 KOG0547 Translocase of outer m 97.7 0.0045 9.7E-08 56.3 16.8 153 56-212 336-491 (606)
121 cd00189 TPR Tetratricopeptide 97.7 0.00096 2.1E-08 46.7 10.7 90 50-142 4-93 (100)
122 PF09976 TPR_21: Tetratricopep 97.7 0.0028 6.1E-08 49.4 13.8 124 83-208 14-143 (145)
123 PF05843 Suf: Suppressor of fo 97.6 0.0005 1.1E-08 60.1 10.4 131 48-181 3-139 (280)
124 KOG1174 Anaphase-promoting com 97.6 0.013 2.8E-07 52.3 18.6 194 9-209 226-464 (564)
125 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0012 2.7E-08 49.1 11.0 96 118-213 3-106 (119)
126 KOG3081 Vesicle coat complex C 97.6 0.012 2.6E-07 49.5 17.0 139 67-212 94-236 (299)
127 KOG3060 Uncharacterized conser 97.6 0.011 2.4E-07 49.3 16.2 179 29-211 26-219 (289)
128 PF12895 Apc3: Anaphase-promot 97.5 0.00014 3.1E-09 50.9 4.5 76 131-207 3-82 (84)
129 PF05843 Suf: Suppressor of fo 97.5 0.0041 8.8E-08 54.4 14.4 141 16-157 2-148 (280)
130 KOG3616 Selective LIM binding 97.5 0.0018 3.9E-08 61.5 12.5 165 25-207 742-932 (1636)
131 KOG1173 Anaphase-promoting com 97.5 0.016 3.5E-07 53.7 17.5 197 10-210 239-441 (611)
132 PF08579 RPM2: Mitochondrial r 97.4 0.002 4.4E-08 46.7 8.7 78 83-161 27-116 (120)
133 KOG1156 N-terminal acetyltrans 97.3 0.056 1.2E-06 51.1 19.4 238 16-268 76-326 (700)
134 KOG3616 Selective LIM binding 97.3 0.0067 1.4E-07 57.9 13.6 110 17-143 767-876 (1636)
135 KOG3060 Uncharacterized conser 97.3 0.078 1.7E-06 44.5 18.1 181 9-197 44-236 (289)
136 PF12895 Apc3: Anaphase-promot 97.3 0.0013 2.9E-08 45.9 7.1 80 59-142 2-83 (84)
137 PRK10153 DNA-binding transcrip 97.3 0.015 3.3E-07 55.2 16.0 139 44-184 335-488 (517)
138 PRK02603 photosystem I assembl 97.3 0.0048 1E-07 49.6 11.1 80 119-198 37-121 (172)
139 PF06239 ECSIT: Evolutionarily 97.3 0.0055 1.2E-07 50.1 10.9 98 11-108 43-166 (228)
140 PRK02603 photosystem I assembl 97.2 0.018 3.8E-07 46.4 14.1 130 45-198 34-166 (172)
141 KOG1174 Anaphase-promoting com 97.2 0.078 1.7E-06 47.6 18.6 194 11-208 190-393 (564)
142 PLN03088 SGT1, suppressor of 97.2 0.0029 6.3E-08 57.3 10.4 100 88-189 9-110 (356)
143 KOG1914 mRNA cleavage and poly 97.2 0.03 6.5E-07 51.8 16.4 119 97-217 347-469 (656)
144 PLN03088 SGT1, suppressor of 97.2 0.0055 1.2E-07 55.5 12.0 102 53-158 9-112 (356)
145 PF14938 SNAP: Soluble NSF att 97.2 0.024 5.3E-07 49.6 15.5 192 15-208 35-262 (282)
146 PF12921 ATP13: Mitochondrial 97.2 0.0015 3.3E-08 49.4 6.8 102 14-131 1-102 (126)
147 CHL00033 ycf3 photosystem I as 97.2 0.0064 1.4E-07 48.7 10.9 93 117-209 35-139 (168)
148 PF13432 TPR_16: Tetratricopep 97.2 0.0022 4.7E-08 42.2 6.6 57 156-212 4-60 (65)
149 PRK04841 transcriptional regul 97.1 0.083 1.8E-06 54.3 21.2 195 17-211 493-719 (903)
150 CHL00033 ycf3 photosystem I as 97.1 0.015 3.2E-07 46.6 12.5 81 46-128 35-117 (168)
151 PRK04841 transcriptional regul 97.1 0.11 2.3E-06 53.6 21.5 198 16-213 532-761 (903)
152 PF13414 TPR_11: TPR repeat; P 97.1 0.0021 4.5E-08 42.9 6.1 64 148-211 2-66 (69)
153 KOG3785 Uncharacterized conser 97.1 0.03 6.5E-07 49.1 14.0 193 20-216 290-494 (557)
154 PF14559 TPR_19: Tetratricopep 97.0 0.0013 2.8E-08 43.7 4.8 53 160-212 2-54 (68)
155 KOG2047 mRNA splicing factor [ 97.0 0.19 4.2E-06 47.6 19.8 52 163-214 361-418 (835)
156 KOG1127 TPR repeat-containing 97.0 0.018 3.9E-07 56.8 13.6 156 17-177 494-658 (1238)
157 PF12921 ATP13: Mitochondrial 97.0 0.0062 1.3E-07 46.0 8.6 26 80-105 1-26 (126)
158 KOG4162 Predicted calmodulin-b 97.0 0.082 1.8E-06 50.9 17.6 202 5-208 313-538 (799)
159 PF13432 TPR_16: Tetratricopep 97.0 0.0025 5.4E-08 41.9 5.8 59 124-182 4-64 (65)
160 PRK14720 transcript cleavage f 97.0 0.022 4.7E-07 57.0 14.3 147 45-212 30-178 (906)
161 PF12688 TPR_5: Tetratrico pep 97.0 0.03 6.5E-07 41.9 11.8 107 53-160 8-117 (120)
162 PF04840 Vps16_C: Vps16, C-ter 96.9 0.18 3.9E-06 44.8 18.5 77 126-208 186-262 (319)
163 KOG0553 TPR repeat-containing 96.9 0.014 3E-07 50.0 10.8 104 92-198 92-198 (304)
164 PRK10866 outer membrane biogen 96.9 0.19 4.2E-06 42.8 18.1 163 45-210 31-239 (243)
165 KOG2796 Uncharacterized conser 96.9 0.19 4.1E-06 42.5 16.9 133 48-181 179-318 (366)
166 KOG0985 Vesicle coat protein c 96.9 0.13 2.9E-06 51.2 18.2 138 45-203 1103-1240(1666)
167 KOG0624 dsRNA-activated protei 96.9 0.28 6.2E-06 43.1 19.2 186 24-213 115-371 (504)
168 PF14559 TPR_19: Tetratricopep 96.8 0.0041 8.9E-08 41.2 5.8 49 59-108 4-52 (68)
169 KOG1127 TPR repeat-containing 96.8 0.046 9.9E-07 54.2 14.7 180 29-210 472-657 (1238)
170 KOG1156 N-terminal acetyltrans 96.8 0.3 6.5E-06 46.4 19.3 101 114-214 366-470 (700)
171 PRK10153 DNA-binding transcrip 96.8 0.063 1.4E-06 51.1 15.5 143 9-154 331-491 (517)
172 PF09205 DUF1955: Domain of un 96.8 0.073 1.6E-06 40.0 12.3 139 58-215 14-152 (161)
173 KOG4162 Predicted calmodulin-b 96.8 0.32 6.9E-06 47.1 19.7 96 117-212 684-783 (799)
174 PF03704 BTAD: Bacterial trans 96.8 0.038 8.3E-07 43.0 11.8 105 14-119 2-138 (146)
175 KOG1125 TPR repeat-containing 96.8 0.2 4.4E-06 46.8 17.7 195 56-265 295-536 (579)
176 PF13371 TPR_9: Tetratricopept 96.7 0.008 1.7E-07 40.5 6.7 57 157-213 3-59 (73)
177 KOG3941 Intermediate in Toll s 96.7 0.018 3.9E-07 48.9 9.8 101 32-133 51-174 (406)
178 PRK15363 pathogenicity island 96.7 0.071 1.5E-06 41.6 12.4 88 52-143 41-129 (157)
179 PF03704 BTAD: Bacterial trans 96.7 0.0064 1.4E-07 47.4 6.8 68 151-218 64-136 (146)
180 KOG0985 Vesicle coat protein c 96.7 0.35 7.6E-06 48.4 19.1 187 1-206 968-1189(1666)
181 PRK10803 tol-pal system protei 96.6 0.033 7.2E-07 48.0 11.0 97 117-213 143-247 (263)
182 KOG2376 Signal recognition par 96.6 0.13 2.8E-06 48.2 15.1 179 20-211 17-203 (652)
183 KOG0553 TPR repeat-containing 96.6 0.02 4.4E-07 49.0 9.3 100 54-158 89-191 (304)
184 PF13414 TPR_11: TPR repeat; P 96.6 0.0051 1.1E-07 40.9 4.8 64 117-180 3-69 (69)
185 KOG0624 dsRNA-activated protei 96.6 0.48 1E-05 41.7 25.9 189 19-212 42-252 (504)
186 KOG3617 WD40 and TPR repeat-co 96.4 0.44 9.6E-06 46.7 18.0 185 13-210 755-994 (1416)
187 PF13281 DUF4071: Domain of un 96.4 0.39 8.5E-06 43.3 16.9 162 51-213 146-335 (374)
188 PF04840 Vps16_C: Vps16, C-ter 96.4 0.21 4.6E-06 44.4 14.9 109 48-174 179-287 (319)
189 KOG0548 Molecular co-chaperone 96.4 0.25 5.4E-06 45.8 15.4 188 14-213 256-456 (539)
190 PRK15331 chaperone protein Sic 96.3 0.031 6.6E-07 43.9 8.3 88 124-211 44-133 (165)
191 KOG2376 Signal recognition par 96.3 0.7 1.5E-05 43.6 18.2 192 12-215 43-256 (652)
192 PF13371 TPR_9: Tetratricopept 96.2 0.024 5.2E-07 38.1 6.4 60 125-184 3-64 (73)
193 COG4235 Cytochrome c biogenesi 96.2 0.077 1.7E-06 45.7 10.5 102 114-215 153-259 (287)
194 KOG2053 Mitochondrial inherita 96.1 1.6 3.5E-05 43.2 21.7 186 26-215 54-258 (932)
195 KOG3785 Uncharacterized conser 96.1 0.17 3.6E-06 44.7 12.4 148 31-182 339-494 (557)
196 KOG2796 Uncharacterized conser 96.1 0.55 1.2E-05 39.8 14.9 129 84-215 180-318 (366)
197 PF14938 SNAP: Soluble NSF att 96.1 0.22 4.7E-06 43.6 13.6 172 30-213 30-226 (282)
198 PRK10803 tol-pal system protei 96.0 0.17 3.8E-06 43.6 12.2 100 81-183 143-251 (263)
199 PF13424 TPR_12: Tetratricopep 95.9 0.033 7.2E-07 38.0 6.3 60 48-107 7-72 (78)
200 PF13525 YfiO: Outer membrane 95.7 0.39 8.5E-06 39.7 12.8 170 24-204 14-199 (203)
201 PF13424 TPR_12: Tetratricopep 95.6 0.024 5.2E-07 38.7 4.6 17 122-138 10-26 (78)
202 PF12688 TPR_5: Tetratrico pep 95.5 0.26 5.6E-06 36.9 9.9 88 87-175 7-101 (120)
203 KOG2053 Mitochondrial inherita 95.4 0.51 1.1E-05 46.6 13.8 128 27-160 21-155 (932)
204 COG4700 Uncharacterized protei 95.4 1.1 2.4E-05 36.0 13.8 155 52-211 62-221 (251)
205 PF13428 TPR_14: Tetratricopep 95.4 0.054 1.2E-06 32.4 4.9 40 150-189 2-41 (44)
206 PF13525 YfiO: Outer membrane 95.3 1.2 2.5E-05 36.9 14.3 151 52-212 11-170 (203)
207 PRK10866 outer membrane biogen 95.2 1.7 3.7E-05 37.1 17.8 153 21-176 38-239 (243)
208 KOG1538 Uncharacterized conser 95.2 0.63 1.4E-05 44.4 13.1 197 5-215 625-849 (1081)
209 PLN03098 LPA1 LOW PSII ACCUMUL 95.1 0.2 4.2E-06 46.0 9.6 97 116-215 74-177 (453)
210 COG4235 Cytochrome c biogenesi 95.1 0.81 1.8E-05 39.5 12.7 101 80-182 155-260 (287)
211 KOG2041 WD40 repeat protein [G 95.1 0.65 1.4E-05 44.7 13.0 93 113-212 848-952 (1189)
212 PLN03098 LPA1 LOW PSII ACCUMUL 95.0 0.13 2.9E-06 47.1 8.4 65 148-212 74-141 (453)
213 smart00299 CLH Clathrin heavy 94.9 1.3 2.8E-05 34.0 13.7 126 49-194 10-136 (140)
214 COG3898 Uncharacterized membra 94.9 2.8 6E-05 37.8 18.6 172 27-203 132-349 (531)
215 PF10300 DUF3808: Protein of u 94.6 2.7 5.8E-05 39.7 16.3 159 50-211 192-375 (468)
216 PF04053 Coatomer_WDAD: Coatom 94.6 1.8 4E-05 40.4 14.9 153 26-208 272-427 (443)
217 KOG3941 Intermediate in Toll s 94.6 0.3 6.5E-06 41.8 8.7 97 12-108 64-186 (406)
218 COG4700 Uncharacterized protei 94.5 2.1 4.5E-05 34.5 18.0 100 112-211 84-188 (251)
219 KOG3617 WD40 and TPR repeat-co 94.5 1.9 4.1E-05 42.6 14.7 75 89-176 920-994 (1416)
220 COG0457 NrfG FOG: TPR repeat [ 94.4 2.2 4.8E-05 34.6 22.6 196 15-212 59-265 (291)
221 PF13431 TPR_17: Tetratricopep 94.4 0.043 9.3E-07 30.8 2.4 32 172-203 2-33 (34)
222 smart00299 CLH Clathrin heavy 94.3 1.8 4E-05 33.2 15.6 122 19-160 11-136 (140)
223 COG3118 Thioredoxin domain-con 94.2 3.4 7.3E-05 35.9 15.4 143 54-198 142-287 (304)
224 COG5107 RNA14 Pre-mRNA 3'-end 94.2 1.8 3.9E-05 39.7 13.1 132 46-181 397-534 (660)
225 COG5107 RNA14 Pre-mRNA 3'-end 94.2 1.2 2.6E-05 40.7 12.1 124 15-143 397-528 (660)
226 KOG0543 FKBP-type peptidyl-pro 94.1 1.1 2.3E-05 40.5 11.5 95 117-211 257-354 (397)
227 KOG1585 Protein required for f 94.1 2.9 6.4E-05 35.2 13.2 189 16-207 32-251 (308)
228 KOG2041 WD40 repeat protein [G 94.0 1.8 3.9E-05 41.8 13.4 63 12-76 689-764 (1189)
229 PF07035 Mic1: Colon cancer-as 94.0 2.5 5.4E-05 33.6 16.3 137 66-215 14-152 (167)
230 KOG1914 mRNA cleavage and poly 93.9 5.7 0.00012 37.4 18.4 160 47-209 367-536 (656)
231 PF13170 DUF4003: Protein of u 93.9 1.8 3.9E-05 38.1 12.7 131 46-178 60-211 (297)
232 KOG2610 Uncharacterized conser 93.9 1.8 4E-05 38.1 12.2 150 58-210 115-274 (491)
233 COG3629 DnrI DNA-binding trans 93.8 0.78 1.7E-05 39.7 9.9 69 17-85 155-231 (280)
234 PF13170 DUF4003: Protein of u 93.7 1.2 2.5E-05 39.3 11.2 120 2-124 84-224 (297)
235 COG1729 Uncharacterized protei 93.6 1.2 2.5E-05 38.1 10.6 57 87-143 184-241 (262)
236 PF04053 Coatomer_WDAD: Coatom 93.5 1.5 3.3E-05 40.9 12.1 135 54-214 269-404 (443)
237 KOG0548 Molecular co-chaperone 93.4 0.71 1.5E-05 42.9 9.5 102 54-159 10-114 (539)
238 COG1729 Uncharacterized protei 93.4 0.85 1.8E-05 38.9 9.4 91 119-212 144-244 (262)
239 KOG2114 Vacuolar assembly/sort 93.1 9.6 0.00021 37.9 16.8 144 22-175 341-489 (933)
240 PF04184 ST7: ST7 protein; In 93.1 7.6 0.00016 36.3 16.5 79 86-164 264-346 (539)
241 COG3898 Uncharacterized membra 93.1 6.5 0.00014 35.6 18.5 194 18-217 85-297 (531)
242 KOG4570 Uncharacterized conser 93.0 0.56 1.2E-05 40.8 7.7 99 8-110 57-164 (418)
243 KOG4555 TPR repeat-containing 92.7 1.5 3.2E-05 33.2 8.6 90 126-215 52-147 (175)
244 PF13281 DUF4071: Domain of un 92.5 8.1 0.00017 35.1 18.2 161 19-182 145-338 (374)
245 PF10602 RPN7: 26S proteasome 92.5 3.2 7E-05 33.4 11.3 95 47-143 37-139 (177)
246 COG3629 DnrI DNA-binding trans 92.5 0.77 1.7E-05 39.7 8.0 61 151-211 155-215 (280)
247 PRK15331 chaperone protein Sic 92.1 0.99 2.1E-05 35.6 7.5 87 54-143 45-131 (165)
248 COG3118 Thioredoxin domain-con 92.0 7.6 0.00017 33.7 14.6 132 79-214 133-267 (304)
249 KOG2280 Vacuolar assembly/sort 92.0 2.1 4.5E-05 41.7 10.8 115 76-206 679-793 (829)
250 PF02284 COX5A: Cytochrome c o 91.9 1.3 2.9E-05 31.7 7.2 60 64-125 28-87 (108)
251 PF10602 RPN7: 26S proteasome 91.9 3.4 7.4E-05 33.3 10.8 94 16-109 37-141 (177)
252 PF13176 TPR_7: Tetratricopept 91.9 0.48 1E-05 26.7 4.2 26 48-73 1-26 (36)
253 cd00923 Cyt_c_Oxidase_Va Cytoc 91.6 1.7 3.6E-05 30.8 7.4 63 61-125 22-84 (103)
254 PF13512 TPR_18: Tetratricopep 91.6 1.8 3.9E-05 33.3 8.3 68 26-93 21-94 (142)
255 PF13762 MNE1: Mitochondrial s 91.6 2.7 5.9E-05 32.4 9.2 46 81-127 79-125 (145)
256 KOG4555 TPR repeat-containing 91.3 4.8 0.0001 30.5 9.9 87 55-142 52-140 (175)
257 PF13929 mRNA_stabil: mRNA sta 91.2 4 8.6E-05 35.4 10.8 125 84-215 134-266 (292)
258 COG4105 ComL DNA uptake lipopr 91.1 8.8 0.00019 32.7 19.0 158 54-212 42-233 (254)
259 PF00637 Clathrin: Region in C 91.1 0.25 5.4E-06 38.2 3.4 84 52-143 13-96 (143)
260 COG4649 Uncharacterized protei 90.8 5.4 0.00012 31.8 10.3 131 45-177 58-195 (221)
261 PF13512 TPR_18: Tetratricopep 90.6 4.4 9.6E-05 31.2 9.5 21 122-142 52-72 (142)
262 PF09613 HrpB1_HrpK: Bacterial 90.5 7.3 0.00016 30.6 12.4 110 88-204 17-130 (160)
263 PF09205 DUF1955: Domain of un 90.2 5 0.00011 30.4 9.1 58 50-108 90-147 (161)
264 KOG1538 Uncharacterized conser 89.6 8.9 0.00019 37.1 12.4 118 11-141 552-682 (1081)
265 PF00515 TPR_1: Tetratricopept 89.2 1.1 2.5E-05 24.5 4.2 28 47-74 2-29 (34)
266 KOG0550 Molecular chaperone (D 89.0 8.6 0.00019 35.1 11.3 152 56-213 179-351 (486)
267 KOG0543 FKBP-type peptidyl-pro 88.9 9.4 0.0002 34.6 11.6 85 23-108 216-318 (397)
268 PF13176 TPR_7: Tetratricopept 88.8 0.9 2E-05 25.6 3.6 25 17-41 1-25 (36)
269 KOG4570 Uncharacterized conser 88.8 2.2 4.8E-05 37.3 7.4 96 45-143 63-161 (418)
270 PF09613 HrpB1_HrpK: Bacterial 88.4 3.2 6.8E-05 32.6 7.4 53 129-181 22-76 (160)
271 PF00515 TPR_1: Tetratricopept 88.3 0.82 1.8E-05 25.1 3.2 31 151-181 3-33 (34)
272 PF07719 TPR_2: Tetratricopept 87.4 1.4 3.1E-05 23.9 3.9 30 152-181 4-33 (34)
273 PF10300 DUF3808: Protein of u 87.2 13 0.00028 35.2 12.3 127 86-212 193-334 (468)
274 TIGR02561 HrpB1_HrpK type III 87.1 3.5 7.5E-05 31.9 6.8 19 160-178 55-73 (153)
275 PF00637 Clathrin: Region in C 86.7 0.3 6.5E-06 37.7 1.0 84 87-175 13-96 (143)
276 PF13374 TPR_10: Tetratricopep 86.6 2.1 4.6E-05 24.5 4.5 27 47-73 3-29 (42)
277 PF13428 TPR_14: Tetratricopep 86.5 3.1 6.8E-05 24.5 5.2 26 49-74 4-29 (44)
278 PRK11906 transcriptional regul 86.5 28 0.00061 32.5 14.2 76 63-142 321-397 (458)
279 KOG0276 Vesicle coat complex C 85.4 11 0.00025 36.0 10.4 148 27-208 598-746 (794)
280 PF04184 ST7: ST7 protein; In 84.5 37 0.00079 32.0 14.0 58 155-212 265-324 (539)
281 PF14669 Asp_Glu_race_2: Putat 83.8 22 0.00047 29.0 10.0 60 85-144 136-208 (233)
282 PF02259 FAT: FAT domain; Int 83.5 33 0.00071 30.7 15.5 181 22-213 5-214 (352)
283 PF07719 TPR_2: Tetratricopept 83.5 3.4 7.4E-05 22.3 4.2 27 48-74 3-29 (34)
284 PF07079 DUF1347: Protein of u 83.3 19 0.00042 33.3 10.7 132 26-161 17-179 (549)
285 PF08631 SPO22: Meiosis protei 82.5 32 0.0007 29.9 20.6 148 26-176 4-184 (278)
286 PF13374 TPR_10: Tetratricopep 82.2 2.9 6.3E-05 23.9 3.8 24 152-175 5-28 (42)
287 cd00923 Cyt_c_Oxidase_Va Cytoc 81.6 10 0.00022 27.0 6.6 34 144-177 37-70 (103)
288 COG3947 Response regulator con 81.6 6.5 0.00014 34.1 6.8 148 62-211 149-341 (361)
289 PF07721 TPR_4: Tetratricopept 81.1 3.4 7.3E-05 21.2 3.3 22 18-39 4-25 (26)
290 PRK15180 Vi polysaccharide bio 81.1 9.3 0.0002 35.6 8.0 118 58-180 301-422 (831)
291 PF02284 COX5A: Cytochrome c o 81.1 8.7 0.00019 27.6 6.2 34 144-177 40-73 (108)
292 PF13181 TPR_8: Tetratricopept 80.9 3.4 7.3E-05 22.4 3.5 30 151-180 3-32 (34)
293 TIGR02561 HrpB1_HrpK type III 80.8 24 0.00053 27.4 9.1 63 93-160 22-87 (153)
294 COG4105 ComL DNA uptake lipopr 80.7 35 0.00076 29.1 16.5 168 15-183 35-238 (254)
295 PF11207 DUF2989: Protein of u 80.5 20 0.00043 29.5 8.9 75 92-169 118-198 (203)
296 PF07079 DUF1347: Protein of u 79.6 51 0.0011 30.7 12.0 117 57-177 17-156 (549)
297 PF11838 ERAP1_C: ERAP1-like C 79.5 44 0.00095 29.6 19.4 182 25-207 48-261 (324)
298 TIGR02508 type_III_yscG type I 79.4 12 0.00026 26.9 6.4 26 27-52 51-76 (115)
299 KOG2610 Uncharacterized conser 78.9 41 0.00089 30.1 10.8 114 94-209 116-235 (491)
300 PF07163 Pex26: Pex26 protein; 78.0 36 0.00077 29.6 10.0 87 52-141 89-182 (309)
301 KOG4234 TPR repeat-containing 78.0 11 0.00023 31.0 6.6 89 126-214 104-199 (271)
302 PF13934 ELYS: Nuclear pore co 77.9 37 0.0008 28.6 10.3 52 123-175 114-166 (226)
303 KOG2280 Vacuolar assembly/sort 77.6 79 0.0017 31.4 17.6 85 119-209 686-770 (829)
304 PRK15180 Vi polysaccharide bio 77.6 31 0.00067 32.3 10.1 128 94-223 302-431 (831)
305 COG4455 ImpE Protein of avirul 77.5 13 0.00028 31.0 7.0 53 51-105 6-59 (273)
306 COG0457 NrfG FOG: TPR repeat [ 77.4 35 0.00075 27.2 21.3 184 28-213 36-232 (291)
307 KOG1464 COP9 signalosome, subu 76.7 49 0.0011 28.6 12.2 198 7-205 18-253 (440)
308 PF07035 Mic1: Colon cancer-as 76.5 37 0.0008 27.1 16.5 123 43-177 26-148 (167)
309 PF11846 DUF3366: Domain of un 75.4 15 0.00032 30.0 7.2 36 145-180 140-175 (193)
310 PF11848 DUF3368: Domain of un 75.3 14 0.0003 22.4 5.2 34 56-89 12-45 (48)
311 PF04190 DUF410: Protein of un 74.9 55 0.0012 28.2 15.3 159 27-212 2-170 (260)
312 COG4455 ImpE Protein of avirul 74.8 18 0.0004 30.1 7.2 63 120-182 4-68 (273)
313 PHA02875 ankyrin repeat protei 74.4 40 0.00086 31.2 10.7 160 2-172 17-188 (413)
314 KOG4077 Cytochrome c oxidase, 74.2 20 0.00044 27.0 6.6 71 64-145 67-137 (149)
315 PF13174 TPR_6: Tetratricopept 74.1 7 0.00015 20.8 3.5 23 158-180 9-31 (33)
316 PF11207 DUF2989: Protein of u 74.0 29 0.00063 28.5 8.2 78 58-137 119-198 (203)
317 PF13431 TPR_17: Tetratricopep 73.7 4.4 9.4E-05 22.5 2.5 22 14-35 12-33 (34)
318 TIGR03504 FimV_Cterm FimV C-te 72.9 7.5 0.00016 23.1 3.5 27 188-214 4-30 (44)
319 PF13181 TPR_8: Tetratricopept 72.1 13 0.00028 20.0 4.3 27 48-74 3-29 (34)
320 PRK10564 maltose regulon perip 72.0 9.3 0.0002 33.4 5.3 43 47-89 258-300 (303)
321 KOG1258 mRNA processing protei 71.8 99 0.0021 29.8 20.4 180 13-197 295-489 (577)
322 smart00028 TPR Tetratricopepti 70.2 11 0.00024 18.9 3.8 18 157-174 9-26 (34)
323 PRK11906 transcriptional regul 69.8 98 0.0021 29.0 17.5 174 29-206 232-430 (458)
324 PF11663 Toxin_YhaV: Toxin wit 69.0 5.6 0.00012 30.1 2.9 31 59-91 108-138 (140)
325 PF10366 Vps39_1: Vacuolar sor 68.8 19 0.00041 26.3 5.6 55 19-74 3-67 (108)
326 KOG1920 IkappaB kinase complex 68.2 92 0.002 32.8 11.8 116 44-175 933-1052(1265)
327 KOG4648 Uncharacterized conser 65.7 27 0.00059 31.2 6.8 49 54-104 105-154 (536)
328 KOG4648 Uncharacterized conser 65.1 25 0.00054 31.4 6.4 90 90-182 106-198 (536)
329 PF10579 Rapsyn_N: Rapsyn N-te 65.0 22 0.00048 24.3 4.8 43 95-137 20-63 (80)
330 COG1747 Uncharacterized N-term 64.9 1.3E+02 0.0029 28.7 18.2 162 45-214 65-236 (711)
331 PF08311 Mad3_BUB1_I: Mad3/BUB 64.8 58 0.0012 24.5 7.8 56 151-208 67-124 (126)
332 PF14853 Fis1_TPR_C: Fis1 C-te 64.7 16 0.00035 22.8 3.9 31 155-185 7-37 (53)
333 KOG0550 Molecular chaperone (D 64.6 86 0.0019 28.9 9.8 50 56-105 259-311 (486)
334 KOG1920 IkappaB kinase complex 64.4 1.9E+02 0.0041 30.7 13.1 20 191-210 1034-1053(1265)
335 KOG1585 Protein required for f 63.1 97 0.0021 26.5 13.3 57 154-210 155-217 (308)
336 PF10579 Rapsyn_N: Rapsyn N-te 63.1 23 0.0005 24.1 4.7 46 58-103 18-65 (80)
337 KOG0276 Vesicle coat complex C 62.3 1E+02 0.0022 30.1 10.1 132 16-174 615-746 (794)
338 KOG2114 Vacuolar assembly/sort 61.9 1E+02 0.0022 31.1 10.5 144 50-208 338-488 (933)
339 TIGR03504 FimV_Cterm FimV C-te 61.9 27 0.00058 20.8 4.3 20 54-73 7-26 (44)
340 KOG1130 Predicted G-alpha GTPa 61.7 22 0.00048 32.6 5.6 127 84-210 198-342 (639)
341 PF14689 SPOB_a: Sensor_kinase 61.6 25 0.00055 22.6 4.6 23 51-73 28-50 (62)
342 KOG3807 Predicted membrane pro 61.4 49 0.0011 29.5 7.5 51 91-141 285-335 (556)
343 COG4785 NlpI Lipoprotein NlpI, 61.0 1E+02 0.0022 26.0 14.8 162 46-214 99-268 (297)
344 PRK11619 lytic murein transgly 60.9 1.8E+02 0.0039 28.9 19.1 117 94-210 254-373 (644)
345 COG4649 Uncharacterized protei 60.5 89 0.0019 25.2 14.7 131 80-212 58-196 (221)
346 cd08819 CARD_MDA5_2 Caspase ac 60.4 45 0.00097 23.3 5.8 61 35-100 22-85 (88)
347 PRK12798 chemotaxis protein; R 60.3 1.4E+02 0.0031 27.6 18.7 194 18-214 113-326 (421)
348 KOG1941 Acetylcholine receptor 59.6 1.4E+02 0.003 27.2 13.8 122 86-208 127-271 (518)
349 PF06552 TOM20_plant: Plant sp 59.1 57 0.0012 26.3 7.0 43 165-214 96-138 (186)
350 PF11846 DUF3366: Domain of un 58.2 38 0.00083 27.5 6.4 51 93-143 120-170 (193)
351 PRK10941 hypothetical protein; 57.4 1.3E+02 0.0028 26.1 10.2 63 151-213 183-245 (269)
352 COG2178 Predicted RNA-binding 56.7 91 0.002 25.5 7.8 15 129-143 133-147 (204)
353 KOG1941 Acetylcholine receptor 56.4 1.6E+02 0.0034 26.9 10.2 126 51-176 127-273 (518)
354 PF13929 mRNA_stabil: mRNA sta 56.3 1.4E+02 0.003 26.2 14.0 111 64-174 146-263 (292)
355 COG5108 RPO41 Mitochondrial DN 56.1 68 0.0015 31.5 8.0 47 51-97 33-81 (1117)
356 COG3947 Response regulator con 55.9 90 0.0019 27.4 8.1 50 83-134 281-330 (361)
357 KOG1464 COP9 signalosome, subu 55.7 1.4E+02 0.003 26.0 9.6 90 123-212 71-174 (440)
358 KOG1586 Protein required for f 54.3 1.4E+02 0.003 25.5 12.6 16 26-41 25-40 (288)
359 PF13934 ELYS: Nuclear pore co 54.1 1.3E+02 0.0029 25.2 10.6 108 47-163 77-186 (226)
360 PF04034 DUF367: Domain of unk 53.6 95 0.0021 23.4 7.2 56 117-172 66-122 (127)
361 KOG4077 Cytochrome c oxidase, 53.1 70 0.0015 24.2 6.1 38 142-179 77-114 (149)
362 PF11663 Toxin_YhaV: Toxin wit 52.3 29 0.00062 26.4 4.1 25 239-267 108-132 (140)
363 PF06552 TOM20_plant: Plant sp 52.0 1.1E+02 0.0023 24.8 7.5 39 133-177 96-135 (186)
364 PF14689 SPOB_a: Sensor_kinase 51.9 54 0.0012 21.1 4.9 46 62-109 6-51 (62)
365 PRK11639 zinc uptake transcrip 51.9 65 0.0014 25.7 6.5 61 72-134 17-77 (169)
366 PF12926 MOZART2: Mitotic-spin 51.8 45 0.00097 23.2 4.6 29 45-73 42-70 (88)
367 PF08631 SPO22: Meiosis protei 51.3 1.6E+02 0.0036 25.5 21.1 187 17-208 38-271 (278)
368 smart00386 HAT HAT (Half-A-TPR 51.0 35 0.00076 17.6 3.7 28 163-190 1-28 (33)
369 KOG2297 Predicted translation 50.9 1.8E+02 0.0039 25.8 10.3 77 8-96 159-238 (412)
370 PF11817 Foie-gras_1: Foie gra 50.8 1.2E+02 0.0025 25.9 8.4 54 87-140 184-241 (247)
371 KOG2066 Vacuolar assembly/sort 50.8 2.8E+02 0.0061 28.0 12.2 23 188-210 510-532 (846)
372 COG5108 RPO41 Mitochondrial DN 50.4 2.7E+02 0.0058 27.7 12.5 116 20-144 33-160 (1117)
373 KOG2396 HAT (Half-A-TPR) repea 50.2 1.3E+02 0.0029 28.5 8.8 109 100-215 90-201 (568)
374 PF07163 Pex26: Pex26 protein; 49.9 1.6E+02 0.0035 25.7 8.7 84 87-172 89-181 (309)
375 COG0735 Fur Fe2+/Zn2+ uptake r 49.4 99 0.0022 23.9 7.0 62 70-133 10-71 (145)
376 KOG3364 Membrane protein invol 49.2 1.2E+02 0.0026 23.3 7.5 49 164-212 50-100 (149)
377 PF11768 DUF3312: Protein of u 49.1 2.5E+02 0.0055 27.0 10.8 23 20-42 413-435 (545)
378 PF12926 MOZART2: Mitotic-spin 49.0 89 0.0019 21.8 6.3 43 67-109 29-71 (88)
379 KOG1498 26S proteasome regulat 49.0 2.2E+02 0.0047 26.2 12.3 184 28-217 25-246 (439)
380 cd07153 Fur_like Ferric uptake 48.3 46 0.00099 24.3 4.8 46 52-97 6-51 (116)
381 KOG0292 Vesicle coat complex C 47.9 31 0.00067 34.8 4.6 95 59-177 606-700 (1202)
382 KOG2908 26S proteasome regulat 47.9 2.1E+02 0.0045 25.8 9.2 83 53-135 82-175 (380)
383 PF10475 DUF2450: Protein of u 47.6 2E+02 0.0042 25.3 10.2 106 51-168 103-216 (291)
384 TIGR01914 cas_Csa4 CRISPR-asso 47.5 1.2E+02 0.0025 27.2 7.6 72 20-92 279-352 (354)
385 PF13762 MNE1: Mitochondrial s 47.5 1.3E+02 0.0029 23.3 9.6 76 18-93 42-127 (145)
386 cd08326 CARD_CASP9 Caspase act 46.8 95 0.0021 21.5 6.1 39 27-65 42-80 (84)
387 PRK09687 putative lyase; Provi 46.3 2E+02 0.0044 25.1 21.7 81 12-94 34-118 (280)
388 PRK10564 maltose regulon perip 45.5 32 0.0007 30.1 4.0 36 180-215 254-289 (303)
389 KOG2396 HAT (Half-A-TPR) repea 45.4 2.8E+02 0.0061 26.5 11.6 163 10-180 385-562 (568)
390 cd00280 TRFH Telomeric Repeat 44.9 1.3E+02 0.0028 24.4 6.9 67 97-163 85-157 (200)
391 KOG1130 Predicted G-alpha GTPa 44.2 38 0.00083 31.1 4.3 131 47-177 196-343 (639)
392 PF04097 Nic96: Nup93/Nic96; 43.8 1.3E+02 0.0029 29.6 8.5 31 117-147 500-535 (613)
393 PF02607 B12-binding_2: B12 bi 43.7 41 0.00089 22.5 3.7 40 57-96 12-51 (79)
394 PF01475 FUR: Ferric uptake re 43.7 42 0.0009 24.8 4.0 48 50-97 11-58 (120)
395 PF08967 DUF1884: Domain of un 43.6 32 0.0007 23.5 2.9 29 240-268 5-33 (85)
396 PF14669 Asp_Glu_race_2: Putat 43.5 1.8E+02 0.004 23.8 13.8 80 120-207 110-205 (233)
397 TIGR01503 MthylAspMut_E methyl 43.4 90 0.0019 29.2 6.6 180 96-316 69-257 (480)
398 KOG2300 Uncharacterized conser 42.9 3.1E+02 0.0066 26.2 16.8 186 19-206 284-508 (629)
399 PF02847 MA3: MA3 domain; Int 42.2 86 0.0019 22.7 5.5 25 20-44 7-31 (113)
400 TIGR02508 type_III_yscG type I 41.6 1.3E+02 0.0029 21.7 7.7 46 127-175 49-94 (115)
401 PF14863 Alkyl_sulf_dimr: Alky 40.8 1.7E+02 0.0036 22.6 6.9 64 132-198 56-119 (141)
402 COG4785 NlpI Lipoprotein NlpI, 39.3 79 0.0017 26.5 5.1 88 127-215 75-165 (297)
403 smart00638 LPD_N Lipoprotein N 38.8 3.8E+02 0.0082 26.1 18.3 193 14-209 309-522 (574)
404 COG0735 Fur Fe2+/Zn2+ uptake r 37.5 1.9E+02 0.004 22.4 6.9 55 110-165 14-71 (145)
405 PF11817 Foie-gras_1: Foie gra 36.9 1.6E+02 0.0035 25.0 7.1 57 119-175 180-244 (247)
406 PF02847 MA3: MA3 domain; Int 36.8 1.2E+02 0.0027 21.8 5.6 76 50-128 6-83 (113)
407 PF07064 RIC1: RIC1; InterPro 36.3 2.8E+02 0.0061 23.9 14.9 156 47-213 83-250 (258)
408 KOG1258 mRNA processing protei 35.6 4.3E+02 0.0093 25.8 11.7 130 45-178 44-180 (577)
409 PRK14956 DNA polymerase III su 35.6 4E+02 0.0087 25.5 10.9 58 99-158 184-242 (484)
410 PF10366 Vps39_1: Vacuolar sor 35.2 1.8E+02 0.0038 21.2 7.3 25 119-143 41-65 (108)
411 KOG1550 Extracellular protein 34.6 4.4E+02 0.0096 25.7 15.8 179 31-215 228-429 (552)
412 cd08332 CARD_CASP2 Caspase act 34.6 1.6E+02 0.0035 20.6 7.0 34 29-62 48-81 (90)
413 KOG2659 LisH motif-containing 34.3 2.8E+02 0.0062 23.3 9.2 91 49-142 29-128 (228)
414 PRK14958 DNA polymerase III su 33.8 4.4E+02 0.0095 25.4 10.0 31 8-40 193-223 (509)
415 PF08311 Mad3_BUB1_I: Mad3/BUB 33.7 2E+02 0.0044 21.5 8.4 42 99-141 81-123 (126)
416 KOG0687 26S proteasome regulat 33.5 3.6E+02 0.0078 24.3 11.2 17 29-45 36-52 (393)
417 KOG1550 Extracellular protein 33.3 2.3E+02 0.0049 27.6 8.2 147 62-213 228-394 (552)
418 PF14561 TPR_20: Tetratricopep 33.2 1.5E+02 0.0032 20.7 5.2 37 177-213 16-52 (90)
419 PRK02287 hypothetical protein; 33.2 2.5E+02 0.0055 22.4 7.5 25 119-143 109-133 (171)
420 PF14853 Fis1_TPR_C: Fis1 C-te 33.1 1.2E+02 0.0027 18.8 6.6 25 188-212 6-30 (53)
421 PF14044 NETI: NETI protein 32.9 42 0.00092 21.1 2.0 18 250-267 11-28 (57)
422 PHA02875 ankyrin repeat protei 32.8 3.9E+02 0.0085 24.5 11.5 182 23-217 7-195 (413)
423 PF13646 HEAT_2: HEAT repeats; 32.7 1.5E+02 0.0034 19.8 8.2 50 43-96 11-60 (88)
424 KOG2297 Predicted translation 32.6 46 0.001 29.3 2.9 46 47-101 295-341 (412)
425 KOG3364 Membrane protein invol 32.3 1.7E+02 0.0036 22.6 5.4 18 126-143 80-97 (149)
426 PHA03100 ankyrin repeat protei 32.2 4.3E+02 0.0093 24.8 11.2 163 2-174 50-239 (480)
427 PF11525 CopK: Copper resistan 32.0 18 0.0004 23.7 0.4 22 328-349 8-29 (73)
428 PHA03100 ankyrin repeat protei 30.9 4.5E+02 0.0098 24.6 11.6 161 3-173 89-271 (480)
429 KOG4642 Chaperone-dependent E3 30.9 1.7E+02 0.0036 25.1 5.7 83 91-176 20-105 (284)
430 COG2178 Predicted RNA-binding 30.3 3.1E+02 0.0067 22.5 9.7 18 194-211 132-149 (204)
431 PF09986 DUF2225: Uncharacteri 30.2 3.2E+02 0.007 22.7 7.7 31 185-215 167-197 (214)
432 KOG1114 Tripeptidyl peptidase 30.0 4.6E+02 0.0099 27.4 9.4 120 31-168 1163-1286(1304)
433 PF04034 DUF367: Domain of unk 30.0 1.7E+02 0.0036 22.1 5.1 60 149-209 66-125 (127)
434 PHA02791 ankyrin-like protein; 29.6 3.9E+02 0.0083 23.4 10.8 183 20-217 32-221 (284)
435 cd00280 TRFH Telomeric Repeat 28.7 3.3E+02 0.0071 22.3 8.1 65 62-130 85-156 (200)
436 PF12796 Ank_2: Ankyrin repeat 28.7 71 0.0015 21.7 3.0 82 24-117 3-87 (89)
437 PF04190 DUF410: Protein of un 28.6 3.8E+02 0.0083 23.1 8.9 26 14-39 89-114 (260)
438 PF12069 DUF3549: Protein of u 28.3 4.5E+02 0.0097 23.8 12.2 125 11-143 122-256 (340)
439 PF12862 Apc5: Anaphase-promot 28.3 2.1E+02 0.0046 19.9 7.8 17 92-108 52-68 (94)
440 PRK07914 hypothetical protein; 27.9 4.3E+02 0.0093 23.4 10.9 78 2-82 137-231 (320)
441 smart00777 Mad3_BUB1_I Mad3/BU 27.6 2.7E+02 0.0058 21.0 6.6 40 168-207 82-123 (125)
442 TIGR03581 EF_0839 conserved hy 27.5 2.1E+02 0.0046 23.9 5.7 79 132-210 136-235 (236)
443 PF09454 Vps23_core: Vps23 cor 27.5 1.8E+02 0.0039 19.0 4.9 30 47-76 9-38 (65)
444 COG4003 Uncharacterized protei 27.4 1.2E+02 0.0026 20.8 3.6 28 188-215 36-63 (98)
445 PF06957 COPI_C: Coatomer (COP 27.2 4.2E+02 0.009 24.8 8.3 39 144-182 293-333 (422)
446 COG5187 RPN7 26S proteasome re 26.7 4.2E+02 0.0091 23.5 7.6 139 67-209 59-218 (412)
447 COG2976 Uncharacterized protei 26.6 3.7E+02 0.008 22.2 13.8 122 48-179 56-189 (207)
448 PF11768 DUF3312: Protein of u 26.5 6E+02 0.013 24.6 9.3 92 119-212 410-507 (545)
449 PRK09687 putative lyase; Provi 26.3 4.4E+02 0.0095 23.0 22.1 24 37-60 28-51 (280)
450 KOG4507 Uncharacterized conser 26.0 2.3E+02 0.005 27.7 6.4 95 93-190 619-717 (886)
451 KOG4279 Serine/threonine prote 26.0 4.2E+02 0.0092 26.9 8.2 142 32-173 180-368 (1226)
452 PF04762 IKI3: IKI3 family; I 25.7 8E+02 0.017 25.8 11.3 20 21-40 700-719 (928)
453 cd08789 CARD_IPS-1_RIG-I Caspa 25.6 1.7E+02 0.0036 20.2 4.3 44 52-100 38-81 (84)
454 PRK02287 hypothetical protein; 25.4 2.7E+02 0.0057 22.3 5.8 61 150-211 108-168 (171)
455 PHA02878 ankyrin repeat protei 25.2 5.8E+02 0.013 24.0 13.4 68 103-173 149-222 (477)
456 KOG0292 Vesicle coat complex C 24.9 8E+02 0.017 25.6 12.4 129 25-177 653-781 (1202)
457 KOG0376 Serine-threonine phosp 24.9 1.8E+02 0.0039 27.4 5.4 49 162-210 17-65 (476)
458 PRK09462 fur ferric uptake reg 24.6 3.2E+02 0.007 21.0 6.3 61 72-134 8-69 (148)
459 KOG0890 Protein kinase of the 24.5 8.1E+02 0.018 28.6 10.8 117 51-176 1388-1510(2382)
460 KOG0403 Neoplastic transformat 24.4 3.8E+02 0.0082 25.3 7.3 72 21-96 515-589 (645)
461 PRK10292 hypothetical protein; 24.4 2.1E+02 0.0045 18.6 4.8 27 71-97 24-50 (69)
462 PRK14956 DNA polymerase III su 24.0 6.4E+02 0.014 24.1 9.1 37 80-117 247-283 (484)
463 PF09670 Cas_Cas02710: CRISPR- 24.0 5.7E+02 0.012 23.5 11.9 53 55-108 140-196 (379)
464 PF10963 DUF2765: Protein of u 24.0 2.5E+02 0.0055 19.4 4.8 32 11-42 12-43 (83)
465 COG2137 OraA Uncharacterized p 23.5 3.9E+02 0.0085 21.5 12.0 76 66-143 88-164 (174)
466 PF12554 MOZART1: Mitotic-spin 23.5 1.4E+02 0.003 18.2 3.0 27 54-80 12-38 (48)
467 KOG0545 Aryl-hydrocarbon recep 23.5 4.9E+02 0.011 22.5 8.9 88 125-212 186-293 (329)
468 PF10255 Paf67: RNA polymerase 23.5 2.4E+02 0.0052 26.2 6.0 57 17-73 124-191 (404)
469 PF11491 DUF3213: Protein of u 23.4 17 0.00036 24.8 -1.0 25 6-30 15-39 (88)
470 PRK14135 recX recombination re 23.3 4.8E+02 0.01 22.3 16.9 80 65-146 125-205 (263)
471 TIGR02328 conserved hypothetic 23.1 67 0.0014 23.6 1.9 25 244-268 49-73 (120)
472 PRK08691 DNA polymerase III su 23.0 6.5E+02 0.014 25.5 9.1 70 8-80 193-279 (709)
473 smart00544 MA3 Domain in DAP-5 22.8 3E+02 0.0064 19.8 9.8 58 19-76 6-67 (113)
474 PF02259 FAT: FAT domain; Int 22.3 5.5E+02 0.012 22.7 16.1 158 13-177 29-212 (352)
475 COG1775 HgdB Benzoyl-CoA reduc 22.2 4.9E+02 0.011 23.8 7.4 79 130-210 142-222 (379)
476 KOG0037 Ca2+-binding protein, 22.2 1.4E+02 0.0031 24.8 3.9 57 1-71 145-201 (221)
477 PF10255 Paf67: RNA polymerase 22.2 5.2E+02 0.011 24.1 7.9 99 45-143 74-190 (404)
478 KOG4507 Uncharacterized conser 22.0 6.8E+02 0.015 24.7 8.6 134 77-213 567-706 (886)
479 PRK14963 DNA polymerase III su 21.8 7E+02 0.015 24.0 9.1 30 84-115 245-274 (504)
480 cd07229 Pat_TGL3_like Triacylg 21.7 4E+02 0.0088 24.6 7.1 21 146-166 234-254 (391)
481 PF12816 Vps8: Golgi CORVET co 21.3 2.4E+02 0.0051 23.1 5.1 59 115-175 20-78 (196)
482 KOG2422 Uncharacterized conser 20.9 8E+02 0.017 24.1 9.6 119 94-212 251-407 (665)
483 COG5159 RPN6 26S proteasome re 20.8 5.9E+02 0.013 22.5 9.6 124 87-211 9-153 (421)
484 PRK14951 DNA polymerase III su 20.6 7.3E+02 0.016 24.7 9.0 78 2-82 192-286 (618)
485 PF03745 DUF309: Domain of unk 20.5 2.5E+02 0.0054 18.0 5.2 14 59-72 12-25 (62)
486 COG1747 Uncharacterized N-term 20.5 7.9E+02 0.017 23.8 20.1 164 13-183 64-239 (711)
487 PRK10941 hypothetical protein; 20.4 5.7E+02 0.012 22.2 10.0 76 84-162 184-264 (269)
488 cd07229 Pat_TGL3_like Triacylg 20.4 4.9E+02 0.011 24.1 7.3 132 2-134 101-254 (391)
489 PF04097 Nic96: Nup93/Nic96; 20.4 8.5E+02 0.018 24.1 12.5 90 54-148 266-358 (613)
490 PF04631 Baculo_44: Baculoviru 20.3 46 0.00099 29.8 0.8 19 331-351 253-271 (371)
491 PF02885 Glycos_trans_3N: Glyc 20.1 2.6E+02 0.0056 18.0 7.1 60 153-212 3-64 (66)
492 smart00804 TAP_C C-terminal do 20.0 1E+02 0.0022 20.0 2.2 15 60-74 39-53 (63)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.7e-79 Score=596.16 Aligned_cols=352 Identities=39% Similarity=0.739 Sum_probs=346.7
Q ss_pred ChHhHHHHhCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc
Q 048117 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80 (352)
Q Consensus 1 ~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 80 (352)
++|+.|.+.|+.||..+||+||++|+++|++++|.++|++|.+||+++||+||.+|+++|+.++|+++|++|.+.|+.||
T Consensus 346 ~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 346 QAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 048117 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCR 160 (352)
Q Consensus 81 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~ 160 (352)
.+||+++|.+|++.|.+++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.+++++|+.+|+..+|++|+.+|+
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~ 505 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACR 505 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999997789999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEEeCCCCch
Q 048117 161 VHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240 (352)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (352)
.+|+++.|..+++++.+..|.+..+|..|+++|++.|+|++|.++++.|+++|+.+.++++|+.+++.++.|+.++..|+
T Consensus 506 ~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~ 585 (697)
T PLN03081 506 IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHP 585 (697)
T ss_pred HcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCc
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHcCcccCCcccccccchhHHhhhhhhhhHHHHHHHHhcCCCCCCcEEEEeccccccccchhhH
Q 048117 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAAFK 320 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~m~~~g~~p~~~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~g~~~~a~~ 320 (352)
..+++++++.++..+|++.|+.||+..++++++.++|+..+..|+|+||++||++.+++++||||+||+|+|||||+|+|
T Consensus 586 ~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k 665 (697)
T PLN03081 586 QSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIK 665 (697)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHhcceEEEecCCccccccCccccCCCCC
Q 048117 321 LISEIVNREIVVRDRNRFHCFQAGSCSCGDYW 352 (352)
Q Consensus 321 ~~~~~~~~~i~~~d~~~~~~~~~g~c~c~~~~ 352 (352)
++|++.+|+|||||.+|||||++|+|||+|||
T Consensus 666 ~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 666 FIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred HHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5e-74 Score=573.46 Aligned_cols=348 Identities=45% Similarity=0.840 Sum_probs=340.1
Q ss_pred ChHhHHHHhCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc
Q 048117 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80 (352)
Q Consensus 1 ~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 80 (352)
++|+.|.+.|+.+|..++|+||++|+|+|++++|.++|+.| .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||
T Consensus 510 ~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd 588 (857)
T PLN03077 510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588 (857)
T ss_pred HHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Confidence 47999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 048117 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCR 160 (352)
Q Consensus 81 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~ 160 (352)
.+||+++|.+|++.|.+++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.+++++|+++||..+|++|+.+|.
T Consensus 589 ~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~ 668 (857)
T PLN03077 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACR 668 (857)
T ss_pred cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999997789999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEEeCCCCch
Q 048117 161 VHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHP 240 (352)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (352)
.+|+.+.++.+.+++.+..|++..+|..|.+.|++.|+|++|.++++.|+++|++++++++|+.+++.+|.|..++..|+
T Consensus 669 ~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~ 748 (857)
T PLN03077 669 IHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHP 748 (857)
T ss_pred HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHcCcccCCcccccccchhHHhhhhhhhhHHHHHHHHhcCCCCCCcEEEEeccccccccchhhH
Q 048117 241 QAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAAFK 320 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~m~~~g~~p~~~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~g~~~~a~~ 320 (352)
..++++..++++..+|++.|+.||+...+ ..+.++|+..+..|+|+||++||++.+++++||||+||+|+|||||+|+|
T Consensus 749 ~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k 827 (857)
T PLN03077 749 QIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVK 827 (857)
T ss_pred chHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHH
Confidence 99999999999999999999999998776 44678899999999999999999999999999999999999999999999
Q ss_pred HHhhHhcceEEEecCCccccccCccccCCC
Q 048117 321 LISEIVNREIVVRDRNRFHCFQAGSCSCGD 350 (352)
Q Consensus 321 ~~~~~~~~~i~~~d~~~~~~~~~g~c~c~~ 350 (352)
++|++.+|+||+||.+|||||++|.|||+|
T Consensus 828 ~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 828 FISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999998
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.6e-46 Score=362.48 Aligned_cols=314 Identities=19% Similarity=0.263 Sum_probs=275.7
Q ss_pred ChHhHHHHhCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc
Q 048117 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80 (352)
Q Consensus 1 ~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 80 (352)
++|+.+.+.|+.||..+||+||++|+++|++++|.++|+.|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 048117 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCR 160 (352)
Q Consensus 81 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~ 160 (352)
..||++++.+|++.|++++|.+++..|.+ .|+.||..+||+||++|+++|++++|.++|++|. +||.++||+||.+|+
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~-~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIR-TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHH-hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHH
Confidence 99999999999999999999999999995 5999999999999999999999999999999997 589999999999999
Q ss_pred hcCCHHHHHHHHHHHHhc-CCCCcchHHHHHHHHHHccCHHHHHHHHHHHHh-cCCccCCceeEEEECCEEEEEEeCCCC
Q 048117 161 VHKNIDLAEEASRQLDQL-DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRN-LGVKKTPGWSSITVDGVVHEFVAGDET 238 (352)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (352)
++|+.++|.++|++|.+. ..++..+|+.++.+|++.|.+++|.++|+.|.+ .|+.|+..++..+++.+ ..
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l--------~r 474 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL--------GR 474 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH--------Hh
Confidence 999999999999999873 335578999999999999999999999999975 69999988877655433 35
Q ss_pred chhHHHHHHHHHHHHHHHHHcCcccCCcccccccchhHHhhhhhhhhHHHHHHHHhcCCCCCCcEEEEeccccccccchh
Q 048117 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCHAA 318 (352)
Q Consensus 239 ~~~~~~~~~~~~~l~~~m~~~g~~p~~~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~g~~~~a 318 (352)
.|..+++.+ +++ +.++.||..++...+.++...+.+....+.....+++.+......+.++..|..+|+.++|
T Consensus 475 ~G~~~eA~~----~~~---~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 475 EGLLDEAYA----MIR---RAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred cCCHHHHHH----HHH---HCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH
Confidence 577777776 444 3478999999988888877766654444333334455444444555677889999999999
Q ss_pred hHHHhhHhcceEE
Q 048117 319 FKLISEIVNREIV 331 (352)
Q Consensus 319 ~~~~~~~~~~~i~ 331 (352)
.+++.+|..+++.
T Consensus 548 ~~v~~~m~~~g~~ 560 (697)
T PLN03081 548 AKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHHHcCCc
Confidence 9999999998764
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.9e-45 Score=365.67 Aligned_cols=320 Identities=19% Similarity=0.311 Sum_probs=268.5
Q ss_pred ChHhHHHHhCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc
Q 048117 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80 (352)
Q Consensus 1 ~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 80 (352)
++|+.|.+.|+.||..+||+||++|+++|++++|.++|++|.+||+++||+||.+|++.|++++|+++|++|++.|+.||
T Consensus 309 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd 388 (857)
T PLN03077 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388 (857)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 048117 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCR 160 (352)
Q Consensus 81 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~ 160 (352)
..||++++.+|++.|+++.|.++++.|.+ .|+.|+..+||+||++|+++|++++|.++|++|. ++|.++|+++|.+|+
T Consensus 389 ~~t~~~ll~a~~~~g~~~~a~~l~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~ 466 (857)
T PLN03077 389 EITIASVLSACACLGDLDVGVKLHELAER-KGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLR 466 (857)
T ss_pred ceeHHHHHHHHhccchHHHHHHHHHHHHH-hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHH
Confidence 99999999999999999999999999995 5999999999999999999999999999999997 579999999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccCCceeEEEECCEE-----------
Q 048117 161 VHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVV----------- 229 (352)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~----------- 229 (352)
+.|+.++|..+|++|....+++..++..++.+|++.|.++.+.+++..|.+.|+.++....+.+++.+.
T Consensus 467 ~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~ 546 (857)
T PLN03077 467 LNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ 546 (857)
T ss_pred HCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHH
Confidence 999999999999999875455566777777777777777777777777776666665544333322110
Q ss_pred -----------EEEEeCCCCchhHHHHHHHHHHHHHHHHHcCcccCCcccccccchhHHhhhhhhhh---HHHHHHHHhc
Q 048117 230 -----------HEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHS---EKLALTFGLM 295 (352)
Q Consensus 230 -----------~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~t~~~~~~~~~~~~~~~~~~---~~l~~~~~~~ 295 (352)
..++.++..+|..+++++ +|++|.+.|+.||..|+...+.++.+.+.+.... +.+...+|+.
T Consensus 547 f~~~~~d~~s~n~lI~~~~~~G~~~~A~~----lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~ 622 (857)
T PLN03077 547 FNSHEKDVVSWNILLTGYVAHGKGSMAVE----LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622 (857)
T ss_pred HHhcCCChhhHHHHHHHHHHcCCHHHHHH----HHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC
Confidence 122445556777777776 8889999999999999999888887766653322 2233345554
Q ss_pred CCCCCCcEEEEeccccccccchhhHHHhhHhc
Q 048117 296 NTPPGTPIRIMKNLRVCEDCHAAFKLISEIVN 327 (352)
Q Consensus 296 ~~~~~~~~~i~~~~~~~g~~~~a~~~~~~~~~ 327 (352)
+..... ..+++.|.++|+.++|.++|.+|+.
T Consensus 623 P~~~~y-~~lv~~l~r~G~~~eA~~~~~~m~~ 653 (857)
T PLN03077 623 PNLKHY-ACVVDLLGRAGKLTEAYNFINKMPI 653 (857)
T ss_pred CchHHH-HHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 443333 3688999999999999999999964
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.8e-44 Score=356.34 Aligned_cols=318 Identities=22% Similarity=0.283 Sum_probs=275.4
Q ss_pred ChHhHHHHhCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhcc----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048117 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME----ERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76 (352)
Q Consensus 1 ~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 76 (352)
++|+.|.+.|+.||..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|.+.|
T Consensus 458 ~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G 537 (1060)
T PLN03218 458 RVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 478999999999999999999999999999999999999998 4799999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHh-cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCcchH
Q 048117 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE-YGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM---PIKPNGVVW 152 (352)
Q Consensus 77 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~ 152 (352)
+.||.+||+.+|.+|++.|++++|.++|++|... .|+.||..+|++||++|+++|++++|.++|++| ++.|+..+|
T Consensus 538 v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ty 617 (1060)
T PLN03218 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHH
Confidence 9999999999999999999999999999999852 589999999999999999999999999999999 778999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccCCceeEEEECCEEEE
Q 048117 153 GALLGGCRVHKNIDLAEEASRQLDQLD-PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHE 231 (352)
Q Consensus 153 ~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~ 231 (352)
+++|.+|++.|++++|.++|++|.+.+ .++..+|+.|+++|++.|++++|.++|++|.+.|+.|+..+++.+++.
T Consensus 618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~a---- 693 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA---- 693 (1060)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----
Confidence 999999999999999999999998742 345679999999999999999999999999999999998887765543
Q ss_pred EEeCCCCchhHHHHHHHHHHHHHHHHHcCcccCCcccccccchhHHhhhhhhhhHHHHHH--HHhcCCCCCCcEEEEecc
Q 048117 232 FVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEKEKFLYRHSEKLALT--FGLMNTPPGTPIRIMKNL 309 (352)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~t~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~i~~~~ 309 (352)
+...+..+++.+ +|++|...|+.||..+|...+.++.+.+......+.+... .|+.+... +-..++..+
T Consensus 694 ----y~k~G~~eeA~~----lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~-Ty~sLL~a~ 764 (1060)
T PLN03218 694 ----CSNAKNWKKALE----LYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI-TYSILLVAS 764 (1060)
T ss_pred ----HHhCCCHHHHHH----HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH
Confidence 334566677665 8888999999999999998888877766665444433322 22222211 112466889
Q ss_pred ccccccchhhHHHhhHhcceEE
Q 048117 310 RVCEDCHAAFKLISEIVNREIV 331 (352)
Q Consensus 310 ~~~g~~~~a~~~~~~~~~~~i~ 331 (352)
.+.|+.+.|.+++.+|...++.
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~ 786 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIK 786 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999876553
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.9e-43 Score=346.03 Aligned_cols=263 Identities=20% Similarity=0.263 Sum_probs=136.1
Q ss_pred hHhHHHHhCC-CCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc
Q 048117 2 VHEYSNQSGF-RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80 (352)
Q Consensus 2 i~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 80 (352)
+++.|.+.|+ .++..+++.++..|++.|.+++|..+|+.|..||..+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 392 Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD 471 (1060)
T PLN03218 392 LLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKAD 471 (1060)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC
Confidence 4566666664 344455555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCcchHHHHHH
Q 048117 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM---PIKPNGVVWGALLG 157 (352)
Q Consensus 81 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~ 157 (352)
..+|+++|.+|++.|++++|.++|++|.+ .|+.||..+|++||++|++.|++++|.++|++| ++.||..+|++||.
T Consensus 472 ~~tynsLI~~y~k~G~vd~A~~vf~eM~~-~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~ 550 (1060)
T PLN03218 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVN-AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 55555555555555555555555555553 255555555555555555555555555555555 44455555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhc---CCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEEe
Q 048117 158 GCRVHKNIDLAEEASRQLDQL---DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVA 234 (352)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~ 234 (352)
+|++.|++++|.++|++|... ..++..+|++|+.+|+++|++++|.++|++|.+.|+.|++.+++.++++
T Consensus 551 a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~a------- 623 (1060)
T PLN03218 551 ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS------- 623 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHH-------
Confidence 555555555555555555431 1122345555555555555555555555555555555554444332221
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHcCcccCCcccccccchhHH
Q 048117 235 GDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEK 277 (352)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~t~~~~~~~~~~ 277 (352)
+.+.+..+++.+ +|++|...|+.||..|+...+..+.+
T Consensus 624 -y~k~G~~deAl~----lf~eM~~~Gv~PD~~TynsLI~a~~k 661 (1060)
T PLN03218 624 -CSQKGDWDFALS----IYDDMKKKGVKPDEVFFSALVDVAGH 661 (1060)
T ss_pred -HHhcCCHHHHHH----HHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 122333333333 44445555555555554444444333
No 7
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.87 E-value=4.3e-22 Score=147.67 Aligned_cols=99 Identities=59% Similarity=1.010 Sum_probs=88.4
Q ss_pred EEEEeCCCCchhHHHHHHHHHHHHHHHHHcCcccCCcccccccchhHH--------hhhhhhhhHHHHHHHHhcCCCCCC
Q 048117 230 HEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEEKEK--------EKFLYRHSEKLALTFGLMNTPPGT 301 (352)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~t~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~ 301 (352)
+.|++|+.+||.. ++..+|...|+.|+...+.+.+..+.+ +..+..|+|+||++||++++
T Consensus 9 h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgli~~---- 76 (116)
T PF14432_consen 9 HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGLINT---- 76 (116)
T ss_pred EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhcccce----
Confidence 7899999999987 266678889999999988777666544 55789999999999999887
Q ss_pred cEEEEecc-ccccccchhhHHHhhHhcceEEEecCCcccccc
Q 048117 302 PIRIMKNL-RVCEDCHAAFKLISEIVNREIVVRDRNRFHCFQ 342 (352)
Q Consensus 302 ~~~i~~~~-~~~g~~~~a~~~~~~~~~~~i~~~d~~~~~~~~ 342 (352)
++++|+ ++|+|||++.|++|++.+|+|+|||++|||||+
T Consensus 77 --~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 77 --RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred --eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 789999 999999999999999999999999999999996
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.72 E-value=6.9e-16 Score=141.76 Aligned_cols=239 Identities=14% Similarity=0.078 Sum_probs=175.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccH----HHHHHHH
Q 048117 16 RVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNG----VTFIGLL 88 (352)
Q Consensus 16 ~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll 88 (352)
.++..|...|.+.|++++|..+|+.+.+ .+..+++.++..+.+.|++++|.+.|+++.+.+..++. ..+..+.
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 5677888888888999999999888875 36678888899999999999999999988775433322 2345666
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--cchHHHHHHHHHhcCCH
Q 048117 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPN--GVVWGALLGGCRVHKNI 165 (352)
Q Consensus 89 ~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~li~~~~~~g~~ 165 (352)
..+.+.|++++|...++++.+. .+.+...+..+...|.+.|++++|.++|+++ ...|+ ..+++.+..+|...|+.
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH
Confidence 7778889999999999888742 2334567778888899999999999999988 33444 35678888999999999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEEeCCCCchhHHHH
Q 048117 166 DLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKI 245 (352)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (352)
++|...++.+.+..|+.. .+..+...+.+.|++++|..+++++.+. .|+......++...+ . ...++...++
T Consensus 266 ~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~----~-~~~~g~~~~a 337 (389)
T PRK11788 266 AEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHL----A-EAEEGRAKES 337 (389)
T ss_pred HHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhh----h-ccCCccchhH
Confidence 999999999888777654 4578888999999999999999988765 344332222121111 0 1113455566
Q ss_pred HHHHHHHHHHHHHcCcccCCccc
Q 048117 246 FQMWEKLLDGMKLKGYIPNTSVV 268 (352)
Q Consensus 246 ~~~~~~l~~~m~~~g~~p~~~t~ 268 (352)
+. ++++|.+.++.|+....
T Consensus 338 ~~----~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 338 LL----LLRDLVGEQLKRKPRYR 356 (389)
T ss_pred HH----HHHHHHHHHHhCCCCEE
Confidence 65 67778888888888743
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.66 E-value=2.2e-14 Score=131.81 Aligned_cols=205 Identities=14% Similarity=0.035 Sum_probs=171.1
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhcccCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHH
Q 048117 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEERT--------VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTF 84 (352)
Q Consensus 13 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 84 (352)
++..+++.++..|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|...|+++.+.. +.+...+
T Consensus 139 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 217 (389)
T PRK11788 139 FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRAS 217 (389)
T ss_pred chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHH
Confidence 567899999999999999999999999987532 1245677888899999999999999998753 3345577
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcC
Q 048117 85 IGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGVVWGALLGGCRVHK 163 (352)
Q Consensus 85 ~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g 163 (352)
..+...+.+.|++++|.++++++... +......+++.++.+|.+.|++++|...++++ ...|+...+..+...+.+.|
T Consensus 218 ~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g 296 (389)
T PRK11788 218 ILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQE 296 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhC
Confidence 88889999999999999999999843 21222467889999999999999999999998 55678778889999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH---ccCHHHHHHHHHHHHhcCCccCCce
Q 048117 164 NIDLAEEASRQLDQLDPLNNGYHVVLSNIYAE---AERWEDVARVRKLMRNLGVKKTPGW 220 (352)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~ 220 (352)
+.++|..+++.+.+..|++. .+..++..+.. .|+.+++..+++.|.++++.|+|.+
T Consensus 297 ~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 297 GPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred CHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 99999999999988888754 55566666554 5699999999999999999998864
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.63 E-value=3.1e-14 Score=143.92 Aligned_cols=198 Identities=14% Similarity=0.095 Sum_probs=120.6
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 048117 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH 89 (352)
Q Consensus 13 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 89 (352)
.+..+|..+...|.+.|++++|...|+.+.+ .+...|..+...+.+.|++++|...|+++.+. .+.+..++..+..
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~ 677 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQ 677 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHH
Confidence 3445555555555555666666555555432 14445555555565666666666666655543 1223455555666
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCHHHH
Q 048117 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGVVWGALLGGCRVHKNIDLA 168 (352)
Q Consensus 90 a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a 168 (352)
.+...|++++|.++++.+... .+++...+..+...|.+.|++++|.+.|+++ ...|+..++..+..++.+.|+.++|
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHH
Confidence 666666666666666665532 2334555666666666666777776666665 3445556666666777777777777
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 169 EEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
...++.+.+..|++...+..+...|...|++++|.+.|+++.+..
T Consensus 756 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 756 VKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 777777766666666666677777777777777777777776553
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.62 E-value=6.9e-14 Score=141.42 Aligned_cols=165 Identities=16% Similarity=0.140 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHH
Q 048117 46 VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125 (352)
Q Consensus 46 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~ 125 (352)
..++..+...+.+.|+.++|..+|+++.+.+ +.+...+..+...+...|++++|..+++.+.. ..+.+..+|..+..
T Consensus 533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~ 609 (899)
T TIGR02917 533 LRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAAD--AAPDSPEAWLMLGR 609 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHH
Confidence 3344444444444444444444444443321 22333444445555555555555555555542 22334455555555
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHH
Q 048117 126 LLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVA 203 (352)
Q Consensus 126 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 203 (352)
.|.+.|++++|...|+++ ...| +...|..+...+.+.|+.++|...++.+.+..|++...+..+...+...|++++|.
T Consensus 610 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 689 (899)
T TIGR02917 610 AQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAK 689 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555555554 2222 33445555555555566666666665555555555555555555555666666666
Q ss_pred HHHHHHHhcC
Q 048117 204 RVRKLMRNLG 213 (352)
Q Consensus 204 ~~~~~m~~~g 213 (352)
++++.+.+.+
T Consensus 690 ~~~~~~~~~~ 699 (899)
T TIGR02917 690 KIAKSLQKQH 699 (899)
T ss_pred HHHHHHHhhC
Confidence 6665555443
No 12
>PF13041 PPR_2: PPR repeat family
Probab=99.56 E-value=1.5e-14 Score=91.19 Aligned_cols=50 Identities=32% Similarity=0.505 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhc
Q 048117 44 RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH 93 (352)
Q Consensus 44 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 93 (352)
||+++||++|++|++.|++++|.++|++|++.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999875
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=2e-12 Score=112.75 Aligned_cols=206 Identities=18% Similarity=0.244 Sum_probs=164.2
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 048117 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER----TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGL 87 (352)
Q Consensus 12 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 87 (352)
+....+|++||.+.||--..+.|++++++-.+. +..+||.+|.+-.-. ...++..+|....++||..|||++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 446789999999999999999999999998754 778899888875433 237899999999999999999999
Q ss_pred HHHHhccCCHHH----HHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHhC----------CCCC-Ccch
Q 048117 88 LHACGHMGWVDE----GRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE-AYEFIRNM----------PIKP-NGVV 151 (352)
Q Consensus 88 l~a~~~~g~~~~----a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m----------~~~p-~~~~ 151 (352)
+++.++.|+++. |.+++.+|+ +.|++|+..+|..+|..++|-++..+ |..++.++ ++.| |...
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmK-eiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMK-EIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHH-HhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 999999998765 567888998 46999999999999999999888765 44444333 2334 5667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc------CCC--CcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccCCceeE
Q 048117 152 WGALLGGCRVHKNIDLAEEASRQLDQL------DPL--NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSS 222 (352)
Q Consensus 152 ~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 222 (352)
|.+.+..|.+..+.+.|.++...+... +|+ ...+|..+..+.+.....+.....|+.|.-.-+.|.+.+..
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 888999999999999999999887641 221 11344567777888889999999999998776767665543
No 14
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.43 E-value=5.2e-12 Score=118.87 Aligned_cols=244 Identities=17% Similarity=0.165 Sum_probs=168.0
Q ss_pred hHhHHHHhCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048117 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER----TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGI 77 (352)
Q Consensus 2 i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 77 (352)
++..+..+|+.|+.++|.+||.-||..|+.+.|- +|.-|+-+ +...++.++.+..+.++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4678899999999999999999999999999998 99988865 4577888888888888877665
Q ss_pred CccHHHHHHHHHHHhccCCHHH---HHHHHHHhHH---hcCCC-------------C-ChhhHHHHHHHHHhcCCHHHHH
Q 048117 78 KPNGVTFIGLLHACGHMGWVDE---GRRFFYSMTT---EYGII-------------P-QIEHYGCMVDLLSRAGFLQEAY 137 (352)
Q Consensus 78 ~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~---~~g~~-------------~-~~~~~~~li~~~~~~g~~~~A~ 137 (352)
.|-..||+.|+.+|...|++.. ..+.+..+.. ..|+- | ...--...+....-.|.++.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 6888889999999999988654 2221211211 11111 1 0111123344455667788888
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Q 048117 138 EFIRNMPIKPNGVVWGALLGGCRVHKN-IDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKK 216 (352)
Q Consensus 138 ~~~~~m~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 216 (352)
+++..+|+-.-..+.-.+|+-+..... +++-........+ ..++.++.++++.-..+|+++.|..++.+|+++|++.
T Consensus 160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e--~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE--APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc--CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 888888543222222223444433332 2333333333333 3456788899999999999999999999999999999
Q ss_pred CCceeEEEECCEEEEEEeCCCCchhHHHHHHHHHHHHHHHHHcCcccCCcccccccch
Q 048117 217 TPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLLDGMKLKGYIPNTSVVLLDIEE 274 (352)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~t~~~~~~~ 274 (352)
+++.+|.++-+ .+....++.+++.|.+.|+.|+..|+..-+.+
T Consensus 238 r~HyFwpLl~g---------------~~~~q~~e~vlrgmqe~gv~p~seT~adyvip 280 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---------------INAAQVFEFVLRGMQEKGVQPGSETQADYVIP 280 (1088)
T ss_pred ccccchhhhhc---------------CccchHHHHHHHHHHHhcCCCCcchhHHHHHh
Confidence 99999986533 11223444588899999999999996544433
No 15
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=2.2e-10 Score=96.80 Aligned_cols=198 Identities=14% Similarity=0.043 Sum_probs=164.2
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEE--R-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 90 (352)
....+..+...|.+.|++++|...|++..+ | +...+..+...+...|++++|.+.|++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 356788889999999999999999998764 2 56788899999999999999999999998753 3456677788889
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHH
Q 048117 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLA 168 (352)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a 168 (352)
+...|++++|.+.++..............+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|+.++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998853222233556777888999999999999999987 3344 456788888999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 169 EEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
...+++.....|.++..+..+...+...|+.++|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999988877766667777888899999999999998877653
No 16
>PF13041 PPR_2: PPR repeat family
Probab=99.38 E-value=1e-12 Score=82.72 Aligned_cols=50 Identities=26% Similarity=0.456 Sum_probs=45.7
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHh
Q 048117 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129 (352)
Q Consensus 79 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~ 129 (352)
||.+|||++|++|++.|++++|.++|++|.+ .|+.||..||++||++|+|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~-~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKK-RGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHcC
Confidence 8999999999999999999999999999995 4999999999999999875
No 17
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=1.2e-10 Score=101.81 Aligned_cols=205 Identities=17% Similarity=0.243 Sum_probs=153.6
Q ss_pred hHhHHHHhCCCCCHhHHHHHHHH--HHHcCCHHHH-HHHHHhcc-----------------------cCCHHHHHHHHHH
Q 048117 2 VHEYSNQSGFRRNIRVCNTLIDM--YVKCGCLEGA-RRVFIEME-----------------------ERTVFTWSAMIQG 55 (352)
Q Consensus 2 i~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A-~~~f~~m~-----------------------~~~~~~~~~li~~ 55 (352)
+.+.|...|++.+..+--.|... |....++--| ++-|-.|. -+...+|..||.|
T Consensus 137 lY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~et~s~mI~G 216 (625)
T KOG4422|consen 137 LYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDETVSIMIAG 216 (625)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCchhHHHHHHH
Confidence 45677777777776666555443 2233222211 23333443 3356899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 048117 56 LAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE 135 (352)
Q Consensus 56 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~ 135 (352)
+|+-...+.|.++|++-.+...+.+..+||.+|.+-+-. .+.+++.+|... .+.||..|+|+++...++.|+++.
T Consensus 217 l~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisq-km~Pnl~TfNalL~c~akfg~F~~ 291 (625)
T KOG4422|consen 217 LCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQ-KMTPNLFTFNALLSCAAKFGKFED 291 (625)
T ss_pred HHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHh-hcCCchHhHHHHHHHHHHhcchHH
Confidence 999999999999999999888999999999999886543 347889999964 999999999999999999999887
Q ss_pred H----HHHHHhC---CCCCCcchHHHHHHHHHhcCCHH-HHHHHHHHHHh------c---CCCCcchHHHHHHHHHHccC
Q 048117 136 A----YEFIRNM---PIKPNGVVWGALLGGCRVHKNID-LAEEASRQLDQ------L---DPLNNGYHVVLSNIYAEAER 198 (352)
Q Consensus 136 A----~~~~~~m---~~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~~~~------~---~~~~~~~~~~l~~~~~~~g~ 198 (352)
| ++++.+| |++|...+|..+|..+++.++.. .+......+.. . .|++...+...++.|....+
T Consensus 292 ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d 371 (625)
T KOG4422|consen 292 ARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRD 371 (625)
T ss_pred HHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhh
Confidence 5 4555555 99999999999999999999884 34444444432 2 34444555667788889999
Q ss_pred HHHHHHHHHHHHh
Q 048117 199 WEDVARVRKLMRN 211 (352)
Q Consensus 199 ~~~a~~~~~~m~~ 211 (352)
.+-|.++...+..
T Consensus 372 ~~LA~~v~~ll~t 384 (625)
T KOG4422|consen 372 LELAYQVHGLLKT 384 (625)
T ss_pred HHHHHHHHHHHHc
Confidence 9999988877654
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.32 E-value=6.3e-10 Score=108.44 Aligned_cols=194 Identities=8% Similarity=-0.110 Sum_probs=103.5
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEE--R-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHAC 91 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 91 (352)
..++..+...|...|++++|...++.+.. | +...+..+ ..+...|++++|...++++.+..-.++..+...+..++
T Consensus 144 ~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l 222 (656)
T PRK15174 144 SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTL 222 (656)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHH
Confidence 44555555566666666666665554421 1 22222222 22455555555555555554432222333333344555
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHH----HHHHHHhC-CCCC-CcchHHHHHHHHHhcCCH
Q 048117 92 GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE----AYEFIRNM-PIKP-NGVVWGALLGGCRVHKNI 165 (352)
Q Consensus 92 ~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~ 165 (352)
.+.|+.++|.+.++..... -+.+...+..+...|.+.|++++ |...|++. ...| +...+..+...+.+.|+.
T Consensus 223 ~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 300 (656)
T PRK15174 223 CAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQN 300 (656)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Confidence 5666666666666655521 12234555556666666666654 55555555 3334 233555666666666666
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 166 DLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
++|...+++.....|.++.....+..+|.+.|++++|...|+.+.+
T Consensus 301 ~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 301 EKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666666666666555555556666666666666666665554
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.27 E-value=2.1e-09 Score=104.62 Aligned_cols=195 Identities=9% Similarity=-0.080 Sum_probs=112.4
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEE--R-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHAC 91 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 91 (352)
...++.+-..+...|++++|...|+...+ | +..+|..+...+...|++++|+..|++..+.. +-+..++..+...+
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLH 409 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 45566666666677777777777776543 2 34566666666667777777777777665531 22355666666666
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHH
Q 048117 92 GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAE 169 (352)
Q Consensus 92 ~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~ 169 (352)
...|++++|...|+.... -.+.+...+..+...+.+.|++++|+..|++. ...| +...|+.+...+...|++++|.
T Consensus 410 ~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence 667777777776666652 11223455555666666666666666666665 3233 3445666666666666666666
Q ss_pred HHHHHHHhcCCCCcchH-------HHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 170 EASRQLDQLDPLNNGYH-------VVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 170 ~~~~~~~~~~~~~~~~~-------~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
..|+......|.....+ ......|...|++++|.+++++..+.
T Consensus 488 ~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 488 EKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 66666665544321111 11112233346666666666655443
No 20
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.26 E-value=4.5e-11 Score=104.72 Aligned_cols=192 Identities=18% Similarity=0.163 Sum_probs=83.5
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCccHHHHHHHHHH
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEE--RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG-IKPNGVTFIGLLHA 90 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a 90 (352)
++..+..++.. ...+++++|.++++..-+ ++...+..++..+.+.++++++.+++++..... .+++...|..+...
T Consensus 77 ~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~ 155 (280)
T PF13429_consen 77 NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEI 155 (280)
T ss_dssp ------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHH
T ss_pred ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 34445555555 456666666666654432 345556666666667777777777777765322 23455566666666
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCCHHH
Q 048117 91 CGHMGWVDEGRRFFYSMTTEYGIIP-QIEHYGCMVDLLSRAGFLQEAYEFIRNM--PIKPNGVVWGALLGGCRVHKNIDL 167 (352)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~ 167 (352)
+.+.|+.++|.+.++...+. .| |....+.++..+...|+.+++.++++.. ....|...|..+..++...|+.++
T Consensus 156 ~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~ 232 (280)
T PF13429_consen 156 YEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEE 232 (280)
T ss_dssp HHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHH
T ss_pred HHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccc
Confidence 66777777777777666632 34 3556666666676777777666666555 112355566667777777777777
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHH
Q 048117 168 AEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLM 209 (352)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 209 (352)
|...+++..+..|.++.....+.+++...|+.++|.++.++.
T Consensus 233 Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 233 ALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccc
Confidence 777777776666766666667777777777777777666544
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.26 E-value=2.7e-09 Score=107.06 Aligned_cols=198 Identities=10% Similarity=-0.015 Sum_probs=160.2
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 048117 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE--RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH 89 (352)
Q Consensus 12 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 89 (352)
.|+......+...+.+.|++++|...|+.+.. ++...+..+...+.+.|+.++|...|++..+.. +++...+..+..
T Consensus 506 ~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~ 584 (987)
T PRK09782 506 QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHA 584 (987)
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHH
Confidence 46654433445555689999999999997664 345567777888899999999999999998754 223333444444
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCHHH
Q 048117 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPN-GVVWGALLGGCRVHKNIDL 167 (352)
Q Consensus 90 a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~ 167 (352)
.....|++++|...++... .+.|+...|..+...+.+.|+.++|...+++. ...|+ ...++.+-..+...|+.++
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 5556799999999999888 34577889999999999999999999999998 55664 4567777778999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 168 AEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
|...++...+..|.++..+..+..++...|++++|...|++..+..
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999899999999999999999999999987654
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.25 E-value=2.1e-09 Score=104.90 Aligned_cols=197 Identities=11% Similarity=-0.026 Sum_probs=152.7
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEE--R-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 90 (352)
+...+..+...+.+.|++++|...|+...+ | +...|..+...+...|++++|...++++....-. +...+..+ ..
T Consensus 109 ~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~ 186 (656)
T PRK15174 109 QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LS 186 (656)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HH
Confidence 456777788888888999999888887764 3 5678888888899999999999998888654322 22223223 34
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHH-
Q 048117 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDL- 167 (352)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~- 167 (352)
+...|++++|...++.+... .-.++...+..+...+.+.|++++|...+++. ...| +...+..+-..+.+.|+.++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~-~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPF-FALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhh
Confidence 77889999999988887743 22233445556677888999999999999887 3344 45667788888999999885
Q ss_pred ---HHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 168 ---AEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 168 ---a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
|...++...+..|++...+..+...+.+.|++++|...+++..+..
T Consensus 266 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~ 314 (656)
T PRK15174 266 KLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH 314 (656)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 8999999999999988888999999999999999999999988753
No 23
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.25 E-value=3.6e-10 Score=103.13 Aligned_cols=201 Identities=17% Similarity=0.239 Sum_probs=161.5
Q ss_pred HHhCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc-H
Q 048117 7 NQSGFRRN-IRVCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN-G 81 (352)
Q Consensus 7 ~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~ 81 (352)
....+.|+ .+++..|...|-..|+++.|...|++..+. =...||.|.+++-..|++.+|.+.|++.... .|+ .
T Consensus 277 rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~ha 354 (966)
T KOG4626|consen 277 RALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHA 354 (966)
T ss_pred HHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccH
Confidence 33445554 355666666677777777777777776643 2478999999999999999999999988763 454 4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHH
Q 048117 82 VTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNG-VVWGALLGG 158 (352)
Q Consensus 82 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~li~~ 158 (352)
...+.|-..+...|.+++|..+|.... .+.|. ...+|.|...|-..|++++|...+++. .++|+. ..|+.+-..
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt 431 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNT 431 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchH
Confidence 477888899999999999999887665 44555 467888999999999999999999887 788863 468888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 159 CRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
|...|+++.|.+.+.+..+..|.-....+.|...|-..|++.+|..-|+...+.
T Consensus 432 ~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 999999999999999999988887778889999999999999999999987653
No 24
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=7.6e-10 Score=101.83 Aligned_cols=191 Identities=18% Similarity=0.168 Sum_probs=161.7
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhcccC-------------------------------------CHHHHHHHHHHHH
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEER-------------------------------------TVFTWSAMIQGLA 57 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-------------------------------------~~~~~~~li~~~~ 57 (352)
..+-.-+-.+|...+++++|+++|+..++. .+.+|.++.++|.
T Consensus 353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfS 432 (638)
T KOG1126|consen 353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFS 432 (638)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhh
Confidence 366677788899999999999999987641 3579999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHH---HHHHHHhcCCH
Q 048117 58 IHGQAKEALTSFNKMIEIGIKP-NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC---MVDLLSRAGFL 133 (352)
Q Consensus 58 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~---li~~~~~~g~~ 133 (352)
-+++.+.|++.|++..+ +.| ...+|+.+-.-+.....+|.|...|+... ..|..+||+ |.-.|.|.+++
T Consensus 433 LQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~~rhYnAwYGlG~vy~Kqek~ 505 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVDPRHYNAWYGLGTVYLKQEKL 505 (638)
T ss_pred hhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCCchhhHHHHhhhhheeccchh
Confidence 99999999999999887 456 67788888888888889999999887544 467777777 45578899999
Q ss_pred HHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 134 QEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 134 ~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
+.|+-.|++. .+.| +.+.-..+...+-+.|+.|+|.++++++...+|.++..-.--+..+...++.++|+..++++++
T Consensus 506 e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 506 EFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred hHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 9999999988 7777 5666777778889999999999999999999998887777777778889999999999999986
Q ss_pred c
Q 048117 212 L 212 (352)
Q Consensus 212 ~ 212 (352)
.
T Consensus 586 ~ 586 (638)
T KOG1126|consen 586 L 586 (638)
T ss_pred h
Confidence 4
No 25
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.17 E-value=1.3e-10 Score=101.80 Aligned_cols=197 Identities=17% Similarity=0.145 Sum_probs=101.7
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 90 (352)
|+..|..+....-..|+.+.|.+.++.+... +...+..++.. ...+++++|.+++.+.-+. .++...+..++..
T Consensus 43 ~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~ 119 (280)
T PF13429_consen 43 DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQL 119 (280)
T ss_dssp ------------------------------------------------------------------------------H-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHH
Confidence 4555666666777788888998888888754 34567777777 6889999999999887554 3566777888899
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHH
Q 048117 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLA 168 (352)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a 168 (352)
+.+.++++++.++++........+++...|..+...+.+.|+.++|++.+++. ...| |....+.++..+...|+.+++
T Consensus 120 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~ 199 (280)
T PF13429_consen 120 YYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEA 199 (280)
T ss_dssp HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHH
Confidence 99999999999999998754345677888999999999999999999999998 5556 466788999999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 169 EEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
..++....+..|.++..+..+..+|...|+.++|...|++..+..
T Consensus 200 ~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 200 REALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 999999888778778888899999999999999999999987643
No 26
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.16 E-value=1.1e-09 Score=99.97 Aligned_cols=237 Identities=13% Similarity=0.162 Sum_probs=178.1
Q ss_pred CCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc-HHHHH
Q 048117 11 FRRN-IRVCNTLIDMYVKCGCLEGARRVFIEMEE--R-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN-GVTFI 85 (352)
Q Consensus 11 ~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~ 85 (352)
+.|+ ...|-.|=+.|...+.++.|...|..... | ..+.+..|...|..+|..+-|++.|++..+ +.|+ ...|+
T Consensus 247 ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~ 324 (966)
T KOG4626|consen 247 LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYN 324 (966)
T ss_pred CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHh
Confidence 4554 45677777788888888888888776542 3 567788888888889999999999998876 4676 55799
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhc
Q 048117 86 GLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPN-GVVWGALLGGCRVH 162 (352)
Q Consensus 86 ~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~ 162 (352)
.|..|+-..|++.+|.+.+..... +.|+ ....+.|.+.|...|.+++|..+|... .+.|. ....|.|...|.+.
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~---l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqq 401 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALR---LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQ 401 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhc
Confidence 999999999999999999987772 3444 677888999999999999999998877 66665 44688899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEEeCCCCchhH
Q 048117 163 KNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQA 242 (352)
Q Consensus 163 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (352)
|++++|...+++.....|.-...++.+-+.|-..|+.+.|.+.+.+....+..--...+ .+...+...|..
T Consensus 402 gnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhs---------NLasi~kDsGni 472 (966)
T KOG4626|consen 402 GNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHS---------NLASIYKDSGNI 472 (966)
T ss_pred ccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHh---------hHHHHhhccCCc
Confidence 99999999999999998987788888889999999999999888776654322101111 122334455667
Q ss_pred HHHHHHHHHHHHHHHHcCcccCCcc
Q 048117 243 EKIFQMWEKLLDGMKLKGYIPNTSV 267 (352)
Q Consensus 243 ~~~~~~~~~l~~~m~~~g~~p~~~t 267 (352)
.++++..+.-+ -++||..-
T Consensus 473 ~~AI~sY~~aL------klkPDfpd 491 (966)
T KOG4626|consen 473 PEAIQSYRTAL------KLKPDFPD 491 (966)
T ss_pred HHHHHHHHHHH------ccCCCCch
Confidence 77776444322 36677654
No 27
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.14 E-value=2.1e-08 Score=97.76 Aligned_cols=184 Identities=14% Similarity=0.058 Sum_probs=157.6
Q ss_pred HHcCCHHHHHHHHHhcccC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHhccCCHH
Q 048117 26 VKCGCLEGARRVFIEMEER------TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN-GVTFIGLLHACGHMGWVD 98 (352)
Q Consensus 26 ~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 98 (352)
...+++++|.+.|+...+. +...|+.+...+...|++++|+..|++..+. .|+ ..+|..+...+...|+++
T Consensus 305 ~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~ 382 (615)
T TIGR00990 305 KADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPD 382 (615)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHH
Confidence 3467899999999987642 4567888999999999999999999999874 465 557888888999999999
Q ss_pred HHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048117 99 EGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPN-GVVWGALLGGCRVHKNIDLAEEASRQLD 176 (352)
Q Consensus 99 ~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 176 (352)
+|...++..... -+.+..+|..+...|...|++++|...|++. ...|+ ...|..+...+.+.|+.++|...++...
T Consensus 383 eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al 460 (615)
T TIGR00990 383 KAEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCK 460 (615)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999988742 2334788999999999999999999999998 55564 5567778888999999999999999999
Q ss_pred hcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 177 QLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
+..|.++..+..+...+...|++++|.+.|+...+..
T Consensus 461 ~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 461 KNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 9899888899999999999999999999999987654
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.10 E-value=2.2e-08 Score=100.72 Aligned_cols=195 Identities=14% Similarity=0.106 Sum_probs=156.7
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGL--AIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHAC 91 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 91 (352)
+...|..+-..+.. |+.++|...|.......+..++.+..++ .+.|++++|...|+++... +|+...+..+..++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 56778888888877 8888999988776643333455544444 6899999999999998653 55555666777888
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCHHHHHH
Q 048117 92 GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGVVWGALLGGCRVHKNIDLAEE 170 (352)
Q Consensus 92 ~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~ 170 (352)
.+.|+.++|.+.++...+. . +++...+..+...+.+.|++++|...+++. ...|+...|..+...+.+.|+.++|..
T Consensus 553 l~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999988843 2 223334444444555669999999999988 667888889999999999999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 171 ASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
.+++.....|++...+..+...+...|+.++|...++...+..
T Consensus 631 ~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 631 DLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999899999999999999999999999987643
No 29
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.09 E-value=3.7e-08 Score=83.03 Aligned_cols=165 Identities=13% Similarity=0.111 Sum_probs=139.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHH
Q 048117 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMV 124 (352)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li 124 (352)
....+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.++..... .+.+...+..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~ 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHH
Confidence 45778889999999999999999999998653 334667888899999999999999999988842 234567788889
Q ss_pred HHHHhcCCHHHHHHHHHhC-C--CCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHH
Q 048117 125 DLLSRAGFLQEAYEFIRNM-P--IKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWE 200 (352)
Q Consensus 125 ~~~~~~g~~~~A~~~~~~m-~--~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 200 (352)
..|...|++++|.+.+++. . ..| ....+..+...+...|+.++|...+.+..+..|.+...+..+...+...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 9999999999999999997 2 112 34567778888999999999999999999988887778888999999999999
Q ss_pred HHHHHHHHHHhc
Q 048117 201 DVARVRKLMRNL 212 (352)
Q Consensus 201 ~a~~~~~~m~~~ 212 (352)
+|...+++..+.
T Consensus 187 ~A~~~~~~~~~~ 198 (234)
T TIGR02521 187 DARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHHh
Confidence 999999998775
No 30
>PF12854 PPR_1: PPR repeat
Probab=99.08 E-value=2.2e-10 Score=65.12 Aligned_cols=34 Identities=38% Similarity=0.557 Sum_probs=31.5
Q ss_pred hCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 048117 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEME 42 (352)
Q Consensus 9 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 42 (352)
.|+.||.++||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4889999999999999999999999999999985
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.04 E-value=1e-07 Score=87.73 Aligned_cols=187 Identities=13% Similarity=0.040 Sum_probs=114.7
Q ss_pred HHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccH-------HHHHHHHHHHh
Q 048117 23 DMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNG-------VTFIGLLHACG 92 (352)
Q Consensus 23 ~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a~~ 92 (352)
..+...|+.+.|...++...+. +......+...|.+.|++++|.+++..+.+.+..++. .+|..++....
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555544444321 3344444445555555555555555555443332211 11222222222
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 048117 93 HMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGVVWGALLGGCRVHKNIDLAEEA 171 (352)
Q Consensus 93 ~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~ 171 (352)
...+.+...++++...+ ..+.++....++...+.+.|+.++|.+++++. ...||... .++.+....++.+++.+.
T Consensus 241 ~~~~~~~l~~~w~~lp~--~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l--~~l~~~l~~~~~~~al~~ 316 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSR--KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERL--VLLIPRLKTNNPEQLEKV 316 (398)
T ss_pred HhcCHHHHHHHHHhCCH--HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH--HHHHhhccCCChHHHHHH
Confidence 22333333444443332 12335566777888889999999999999887 43344422 234444566999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 172 SRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
.+...+..|+++.....+...+.+.++|++|.+.|+...+..
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999889999999999999999999999988754
No 32
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.01 E-value=5.9e-08 Score=89.68 Aligned_cols=202 Identities=11% Similarity=-0.086 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH--
Q 048117 17 VCNTLIDMYVKCGCLEGARRVFIEMEE--R-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHAC-- 91 (352)
Q Consensus 17 ~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-- 91 (352)
+.-+....+...|+++.|...++.+.+ | +...+..+...+.+.|++++|.+++.++.+.++.+.......-..++
T Consensus 155 ~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (409)
T TIGR00540 155 VEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIG 234 (409)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 333446666667777777777777664 2 55667777777777777777777777777665432222111111111
Q ss_pred -hccCCHHHHHHHHHHhHHhc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcch---HHHHHHHHHhcCC
Q 048117 92 -GHMGWVDEGRRFFYSMTTEY--GIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGVV---WGALLGGCRVHKN 164 (352)
Q Consensus 92 -~~~g~~~~a~~~~~~m~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~---~~~li~~~~~~g~ 164 (352)
...+..+.+.+.+..+.... ..+.+...+.++...+...|+.++|.+++++. ...||... +..........++
T Consensus 235 ~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~ 314 (409)
T TIGR00540 235 LLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPED 314 (409)
T ss_pred HHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCC
Confidence 12222222223333333210 11136778888889999999999999999988 54566553 1222223344578
Q ss_pred HHHHHHHHHHHHhcCCCCc--chHHHHHHHHHHccCHHHHHHHHHHHHhcCCccCC
Q 048117 165 IDLAEEASRQLDQLDPLNN--GYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTP 218 (352)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 218 (352)
.+.+.+.++...+..|+++ ....++...+.+.|++++|.+.|+........|++
T Consensus 315 ~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~ 370 (409)
T TIGR00540 315 NEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA 370 (409)
T ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH
Confidence 8899999999888999888 67778899999999999999999964444444543
No 33
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.98 E-value=1.3e-07 Score=98.55 Aligned_cols=188 Identities=12% Similarity=0.032 Sum_probs=129.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-cHHHHH--------
Q 048117 18 CNTLIDMYVKCGCLEGARRVFIEMEE--R-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP-NGVTFI-------- 85 (352)
Q Consensus 18 ~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~-------- 85 (352)
+..+...+...|++++|.+.|++..+ | +...+..+...|.+.|++++|...|++..+. .| +...+.
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~ 541 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSG 541 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHh
Confidence 44555556666666666666665543 2 3445555555666666666666666665542 12 121221
Q ss_pred ------------------------------------HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHh
Q 048117 86 ------------------------------------GLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129 (352)
Q Consensus 86 ------------------------------------~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~ 129 (352)
.+...+...|+.++|.++++ ..+++...+..+...|.+
T Consensus 542 ~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~------~~p~~~~~~~~La~~~~~ 615 (1157)
T PRK11447 542 SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR------QQPPSTRIDLTLADWAQQ 615 (1157)
T ss_pred CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH------hCCCCchHHHHHHHHHHH
Confidence 22344555566666665554 123455667788889999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHH
Q 048117 130 AGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRK 207 (352)
Q Consensus 130 ~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 207 (352)
.|+.++|++.|++. ...| +...+..+...+...|+.++|...++.+.+..|++......+..++...|++++|.++++
T Consensus 616 ~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 616 RGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999988 4455 567788899999999999999999999888888877777778888999999999999999
Q ss_pred HHHhcC
Q 048117 208 LMRNLG 213 (352)
Q Consensus 208 ~m~~~g 213 (352)
.+....
T Consensus 696 ~al~~~ 701 (1157)
T PRK11447 696 RLIPQA 701 (1157)
T ss_pred HHhhhC
Confidence 987654
No 34
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.98 E-value=1.4e-07 Score=93.92 Aligned_cols=190 Identities=9% Similarity=0.012 Sum_probs=149.9
Q ss_pred HHHHHcCCHHHHHHHHHhcccCC---H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---cHHHHHHHHHHHhccC
Q 048117 23 DMYVKCGCLEGARRVFIEMEERT---V-FTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP---NGVTFIGLLHACGHMG 95 (352)
Q Consensus 23 ~~~~~~g~~~~A~~~f~~m~~~~---~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g 95 (352)
..+...|+.++|...|+.+.+.+ + ..--.+...|...|++++|+..|++..+..-.. .......+..++...|
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 34467799999999999988642 1 111225678999999999999999987642111 1344666777889999
Q ss_pred CHHHHHHHHHHhHHhcC----------CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHH
Q 048117 96 WVDEGRRFFYSMTTEYG----------IIPQ---IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCR 160 (352)
Q Consensus 96 ~~~~a~~~~~~m~~~~g----------~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 160 (352)
++++|.++++.+..... -.|+ ...+..+...+...|++++|+++++++ ...| +...+..+...+.
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ 404 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999884310 1123 234567778889999999999999998 3344 5667888999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 161 VHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
..|+.++|++.+++.....|++......+...+.+.|++++|+.+++.+.+.
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998888888888899999999999999999874
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.96 E-value=3.3e-08 Score=91.25 Aligned_cols=196 Identities=12% Similarity=0.044 Sum_probs=163.6
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHH---HHH
Q 048117 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVT---FIG 86 (352)
Q Consensus 13 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ 86 (352)
-.+.+|.++-++|+-.++-+.|.+.|+...+. ...+|+.+..-+.....++.|...|+.... +|... |-.
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnAwYG 494 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRHYNAWYG 494 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHHHHh
Confidence 35789999999999999999999999988764 568888888889999999999999998753 44444 445
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcC
Q 048117 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHK 163 (352)
Q Consensus 87 ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g 163 (352)
+--.|.+.++++.|+-.|+... .+.|. .+....+...+-+.|+.|+|++++++. ...| |+..=--....+...+
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~ 571 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLG 571 (638)
T ss_pred hhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhc
Confidence 6778899999999999998776 55564 566777888899999999999999998 3333 4444444566777889
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Q 048117 164 NIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVK 215 (352)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 215 (352)
+.++|.+.++++++..|++...+.++...|.+.|+.+.|..-|.-+.+.+-+
T Consensus 572 ~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 572 RYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred chHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 9999999999999999999999999999999999999999998888765544
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=98.94 E-value=2.8e-07 Score=88.43 Aligned_cols=194 Identities=11% Similarity=-0.002 Sum_probs=145.2
Q ss_pred CCCC-HhHHHHHHHHHH---------HcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048117 11 FRRN-IRVCNTLIDMYV---------KCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGI 77 (352)
Q Consensus 11 ~~~~-~~~~~~li~~~~---------~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 77 (352)
+.|+ ...|..|..+|. ..+++++|...+++..+. +...|..+...+...|++++|...|++..+.
T Consensus 290 ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-- 367 (553)
T PRK12370 290 MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL-- 367 (553)
T ss_pred cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Confidence 3454 445555554443 234588999999987753 6788888888999999999999999999875
Q ss_pred Ccc-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCC-cchH
Q 048117 78 KPN-GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI-EHYGCMVDLLSRAGFLQEAYEFIRNM-PI-KPN-GVVW 152 (352)
Q Consensus 78 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~-~~~~ 152 (352)
.|+ ...+..+..++...|++++|...++...+ +.|+. ..+..++..+...|++++|...+++. .. .|+ ...+
T Consensus 368 ~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~ 444 (553)
T PRK12370 368 SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILL 444 (553)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHH
Confidence 454 55777888899999999999999999883 34543 33344555677789999999999887 22 354 3346
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 153 GALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 153 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
..+-..+...|+.++|...+.++....|........+...|...| ++|...++.+.+
T Consensus 445 ~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 445 SMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 677778889999999999999987777766656667777777777 478887777655
No 37
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.94 E-value=2.9e-07 Score=95.91 Aligned_cols=189 Identities=13% Similarity=0.029 Sum_probs=131.9
Q ss_pred HHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-cHHHH------------H
Q 048117 22 IDMYVKCGCLEGARRVFIEMEE--R-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP-NGVTF------------I 85 (352)
Q Consensus 22 i~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~------------~ 85 (352)
-..+...|++++|...|++..+ | |...+..+...+.+.|++++|+..|++..+..-.. +...+ .
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 3455667888888888877654 3 66777778888888888888888888876542111 11111 1
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHH---------
Q 048117 86 GLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPN-GVVWGA--------- 154 (352)
Q Consensus 86 ~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~--------- 154 (352)
..-..+.+.|++++|...+++..+. -+.+...+..|...|...|++++|.+.|++. ...|+ ...+..
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 1233556777888888888777742 2234556666777778888888888887776 33343 222222
Q ss_pred ---------------------------------HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHH
Q 048117 155 ---------------------------------LLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWED 201 (352)
Q Consensus 155 ---------------------------------li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 201 (352)
+...+...|+.++|...+++..+..|+++..+..+...|.+.|++++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 23345567999999999999999999988888889999999999999
Q ss_pred HHHHHHHHHhc
Q 048117 202 VARVRKLMRNL 212 (352)
Q Consensus 202 a~~~~~~m~~~ 212 (352)
|...+++..+.
T Consensus 514 A~~~l~~al~~ 524 (1157)
T PRK11447 514 ADALMRRLAQQ 524 (1157)
T ss_pred HHHHHHHHHHc
Confidence 99999998764
No 38
>PF12854 PPR_1: PPR repeat
Probab=98.93 E-value=1.7e-09 Score=61.47 Aligned_cols=32 Identities=31% Similarity=0.625 Sum_probs=25.6
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 048117 112 GIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM 143 (352)
Q Consensus 112 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 143 (352)
|+.||..|||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 67788888888888888888888888888777
No 39
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.90 E-value=4.3e-07 Score=80.09 Aligned_cols=191 Identities=15% Similarity=0.067 Sum_probs=139.9
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHH
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN-GVTFIGLLHA 90 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 90 (352)
...|..+-..|.+.|+.++|...|+...+ .+...|+.+...+...|++++|+..|++..+. .|+ ..++..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 35577777789999999999999998764 36789999999999999999999999999874 564 5677888888
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCCHHHH
Q 048117 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM--PIKPNGVVWGALLGGCRVHKNIDLA 168 (352)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a 168 (352)
+...|++++|.+.++...+ ..|+..........+...++.++|...|.+. ...|+ .|..-+ .....|+...+
T Consensus 142 l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~~~~-~~~~lg~~~~~ 215 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKE--QWGWNI-VEFYLGKISEE 215 (296)
T ss_pred HHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCcc--ccHHHH-HHHHccCCCHH
Confidence 9999999999999998884 3454332233333345678899999999765 22233 333222 22335555443
Q ss_pred HHHHHHHHh-------cCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 048117 169 EEASRQLDQ-------LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGV 214 (352)
Q Consensus 169 ~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 214 (352)
+.+..+.+ ..|.....|..+...|.+.|++++|...|++..+.++
T Consensus 216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 34444442 2334445788899999999999999999999987664
No 40
>PRK12370 invasion protein regulator; Provisional
Probab=98.89 E-value=2.3e-07 Score=89.03 Aligned_cols=194 Identities=15% Similarity=-0.001 Sum_probs=145.3
Q ss_pred CHhHHHHHHHHHHH-----cCCHHHHHHHHHhcccC---CHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcC
Q 048117 14 NIRVCNTLIDMYVK-----CGCLEGARRVFIEMEER---TVFTWSAMIQGLAI---------HGQAKEALTSFNKMIEIG 76 (352)
Q Consensus 14 ~~~~~~~li~~~~~-----~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~g 76 (352)
+...|...+.+-.. .+++++|...|++..+. +...|..+..++.. .++.++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l- 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL- 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc-
Confidence 44445555554321 23467899999988754 34566666555442 24478999999999875
Q ss_pred CCc-cHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcc-hH
Q 048117 77 IKP-NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGV-VW 152 (352)
Q Consensus 77 ~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~ 152 (352)
.| +...+..+-..+...|++++|...+++..+ +.|+ ...+..+...|...|++++|...+++. ...|+.. .+
T Consensus 334 -dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~ 409 (553)
T PRK12370 334 -DHNNPQALGLLGLINTIHSEYIVGSLLFKQANL---LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAG 409 (553)
T ss_pred -CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhH
Confidence 45 566777788888899999999999999884 2354 677888899999999999999999998 5666543 33
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 153 GALLGGCRVHKNIDLAEEASRQLDQL-DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 153 ~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
..++..+...|+.++|...++++... .|.++..+..+..+|...|+.++|...++++...
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 44455577789999999999998765 4666666778888899999999999999887543
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=4.4e-07 Score=80.66 Aligned_cols=201 Identities=12% Similarity=0.142 Sum_probs=155.1
Q ss_pred HHhCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccC------CHH-------------------------------HH
Q 048117 7 NQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER------TVF-------------------------------TW 49 (352)
Q Consensus 7 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~------~~~-------------------------------~~ 49 (352)
..-|++-+...-+-...+.-...|++.|+.+|+++.+. |.. |+
T Consensus 254 ~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETC 333 (559)
T KOG1155|consen 254 SSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETC 333 (559)
T ss_pred HhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccce
Confidence 34456555555555555566788999999999998753 222 33
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHH
Q 048117 50 SAMIQGLAIHGQAKEALTSFNKMIEIGIKPN-GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128 (352)
Q Consensus 50 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~ 128 (352)
..+.+-|.-.++.+.|+..|++..+. .|. ...++.+-.-|....+...|.+-++..+. -.+.|-..|-.|-++|.
T Consensus 334 CiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 334 CIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYE 409 (559)
T ss_pred eeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHH
Confidence 34455566677888999999988774 344 44677788888888888889888888772 23446678888999999
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHH
Q 048117 129 RAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVR 206 (352)
Q Consensus 129 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 206 (352)
-.+...-|+-.|++. ..+| |...|.+|-.+|.+.++.++|.+.|......+-.+...+..|.+.|-+.++.++|.+.|
T Consensus 410 im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~y 489 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYY 489 (559)
T ss_pred HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999888 5666 78889999999999999999999999988766555677888899999999999999888
Q ss_pred HHHHh
Q 048117 207 KLMRN 211 (352)
Q Consensus 207 ~~m~~ 211 (352)
....+
T Consensus 490 ek~v~ 494 (559)
T KOG1155|consen 490 EKYVE 494 (559)
T ss_pred HHHHH
Confidence 87665
No 42
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.86 E-value=1e-06 Score=87.59 Aligned_cols=198 Identities=12% Similarity=0.088 Sum_probs=169.4
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhcccC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccH-HHH
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEER--------TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNG-VTF 84 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~ 84 (352)
+...|-.-|......+++++|++++++.... -...|-++++.-...|.-+...++|++..+. .|+ ..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHHH
Confidence 4577999999999999999999999987642 3467899999888889889999999999875 343 458
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCcchHHHHHHHHH
Q 048117 85 IGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM----PIKPNGVVWGALLGGCR 160 (352)
Q Consensus 85 ~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~li~~~~ 160 (352)
..|...|.+.+..++|-++++.|.+++| -...+|...++.+.+.+.-+.|..++.+. +-+-......-.+..-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8999999999999999999999998777 45678999999999999999999999886 32223445555666678
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Q 048117 161 VHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKK 216 (352)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 216 (352)
+.|+.+++..+|+......|.....|+..+++-.+.|+.+.++.+|++....++.|
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 89999999999999999888878899999999999999999999999999988864
No 43
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.77 E-value=1.3e-06 Score=86.43 Aligned_cols=186 Identities=12% Similarity=0.018 Sum_probs=143.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCC
Q 048117 20 TLIDMYVKCGCLEGARRVFIEMEERTVF---TWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGW 96 (352)
Q Consensus 20 ~li~~~~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 96 (352)
.-+-..++.|+++.|...|++..+.+.. ....++..+...|+.++|+..+++.... -.........+...+...|+
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCC
Confidence 3344567899999999999998854332 2338888899999999999999998721 12233344444668888999
Q ss_pred HHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 048117 97 VDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175 (352)
Q Consensus 97 ~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 175 (352)
+++|.++++.+.+. -+-+...+..++..|...++.++|++.++++ +..|+...+-.++..+...++..+|.+.++++
T Consensus 118 yd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 118 WDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999999853 2334677778889999999999999999999 56677666644444444456666699999999
Q ss_pred HhcCCCCcchHHHHHHHHHHccCHHHHHHHHHH
Q 048117 176 DQLDPLNNGYHVVLSNIYAEAERWEDVARVRKL 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (352)
.+..|.+...+..+..+..+.|-...|.++.+.
T Consensus 196 l~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 196 VRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 999999988888888999999999888877654
No 44
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.77 E-value=1.7e-06 Score=85.55 Aligned_cols=191 Identities=12% Similarity=0.056 Sum_probs=155.8
Q ss_pred HHHHHHcCCHHHHHHHHHhcccC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCccHHHHHHHHHHHh
Q 048117 22 IDMYVKCGCLEGARRVFIEMEER----TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG-----IKPNGVTFIGLLHACG 92 (352)
Q Consensus 22 i~~~~~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~ll~a~~ 92 (352)
+-++.+.|+..++.+-|+.++.. -..+--++.++|...+++++|+.+|++..... ..++......|.-++.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 45567889999999999999954 23556688999999999999999999996532 2234444678999999
Q ss_pred ccCCHHHHHHHHHHhHHhcC----------CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHH
Q 048117 93 HMGWVDEGRRFFYSMTTEYG----------IIPQ---IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLG 157 (352)
Q Consensus 93 ~~g~~~~a~~~~~~m~~~~g----------~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~ 157 (352)
..+++++|..+++.+....- -.|+ ...+..++..+...|++.+|++.++++ ...| |...+..+-.
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~ 458 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALAS 458 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999985211 0122 234456777889999999999999999 3445 6778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 158 GCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
.+...|.+.+|++.++......|++..+.......+...|+|.+|..+.+.+.+.
T Consensus 459 v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 459 IYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 9999999999999998888899998888888999999999999999999888764
No 45
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=1.5e-06 Score=77.21 Aligned_cols=170 Identities=14% Similarity=0.178 Sum_probs=115.0
Q ss_pred HHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHH
Q 048117 26 VKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRR 102 (352)
Q Consensus 26 ~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 102 (352)
-+.|++++|+..|-++.. .++...-.+.+.|-...++.+|++++.+.... ++.|+...+-|...|-+.|+-.+|++
T Consensus 535 e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq 613 (840)
T KOG2003|consen 535 EALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQ 613 (840)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhh
Confidence 345556666655554432 34444555555565566666666666554332 44456677777777888888877777
Q ss_pred HHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHH-HhcCCHHHHHHHHHHHHhcCC
Q 048117 103 FFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGVVWGALLGGC-RVHKNIDLAEEASRQLDQLDP 180 (352)
Q Consensus 103 ~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~ 180 (352)
.+-+-.+ -++.+..|..-|...|....-+++|...|++. -++|+..-|..||.+| .+.|++.+|..++..+....|
T Consensus 614 ~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 614 CHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred hhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 7654442 45566777777777777777788888888877 5678888888887665 567888888888888887778
Q ss_pred CCcchHHHHHHHHHHccC
Q 048117 181 LNNGYHVVLSNIYAEAER 198 (352)
Q Consensus 181 ~~~~~~~~l~~~~~~~g~ 198 (352)
.+......|+..+...|.
T Consensus 692 edldclkflvri~~dlgl 709 (840)
T KOG2003|consen 692 EDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cchHHHHHHHHHhccccc
Confidence 777777777777666654
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.76 E-value=1.4e-06 Score=80.18 Aligned_cols=192 Identities=10% Similarity=0.031 Sum_probs=148.7
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccCC---H--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc
Q 048117 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERT---V--------FTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80 (352)
Q Consensus 12 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~---~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 80 (352)
+-++.+...+...|.+.|++++|.+++..+.+.. . .+|..++.......+.+...+++++.-+. .+.+
T Consensus 184 P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~ 262 (398)
T PRK10747 184 PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQ 262 (398)
T ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCC
Confidence 3467889999999999999999999999998642 1 24445555555555666777777776432 3457
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHH
Q 048117 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPN-GVVWGALLGG 158 (352)
Q Consensus 81 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~ 158 (352)
......+..++...|+.++|..+++...+ ..||.. -.++.+....++.+++++..+.. ...|+ ...+.++-..
T Consensus 263 ~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl 337 (398)
T PRK10747 263 VALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQL 337 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 77888899999999999999999988874 244442 22333344569999999999888 44564 4457788899
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHH
Q 048117 159 CRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
|.+.+++++|...|+...+..|++ ..+..|...+.+.|+.++|.+.+++-.
T Consensus 338 ~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 338 LMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999988875 467789999999999999999998654
No 47
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.75 E-value=1.7e-06 Score=80.34 Aligned_cols=191 Identities=16% Similarity=0.147 Sum_probs=146.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHhccc-------C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCc-cHH
Q 048117 20 TLIDMYVKCGCLEGARRVFIEMEE-------R----TVFTWSAMIQGLAIHGQAKEALTSFNKMIE-----IGIKP-NGV 82 (352)
Q Consensus 20 ~li~~~~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p-~~~ 82 (352)
.+-..|...+++++|..+|+.+-. + -..+++.|-..|.+.|++++|...+++..+ .|..+ ...
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 466788999999999999998763 1 246788888899999999999998888742 22222 322
Q ss_pred -HHHHHHHHHhccCCHHHHHHHHHHhHHhcC--CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhC--------C-CC
Q 048117 83 -TFIGLLHACGHMGWVDEGRRFFYSMTTEYG--IIPQ----IEHYGCMVDLLSRAGFLQEAYEFIRNM--------P-IK 146 (352)
Q Consensus 83 -t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g--~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m--------~-~~ 146 (352)
-++.+...|...+++++|..++....+-+- ..++ ..+|+.|...|.+.|++++|.+++++. + ..
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 377788899999999999998876654222 2222 467999999999999999999999887 1 12
Q ss_pred C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCC---cchHHHHHHHHHHccCHHHHHHHHHHHH
Q 048117 147 P-NGVVWGALLGGCRVHKNIDLAEEASRQLDQ----LDPLN---NGYHVVLSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 147 p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
+ ....++.|-..|.+.+..++|.++|.+... .+|+. ..+|..|...|.+.|++++|.++.....
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 245677888899999999999999987543 45544 3566789999999999999999988765
No 48
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.73 E-value=6.8e-07 Score=82.94 Aligned_cols=235 Identities=17% Similarity=0.149 Sum_probs=161.6
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhcccC----------CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH---c--C-C
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEER----------TV-FTWSAMIQGLAIHGQAKEALTSFNKMIE---I--G-I 77 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----------~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~---~--g-~ 77 (352)
..+..-|..+|...|+++.|..+|+...+. .+ ...+.+-..|...+++.+|..+|+++.. . | -
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 466677999999999999999999976542 22 2334466678889999999999999963 1 2 2
Q ss_pred Ccc-HHHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCC-CCh-hhHHHHHHHHHhcCCHHHHHHHHHhC------C
Q 048117 78 KPN-GVTFIGLLHACGHMGWVDEGRRFFYSMTT----EYGII-PQI-EHYGCMVDLLSRAGFLQEAYEFIRNM------P 144 (352)
Q Consensus 78 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~g~~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~m------~ 144 (352)
.|. ..|++.|-.+|.+.|++++|...++.... ..|.. |.+ ..++.+...+...+++++|..+++.. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 222 33688888899999999999888766542 12222 222 34566777888999999998888765 1
Q ss_pred CCCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 145 IKPN----GVVWGALLGGCRVHKNIDLAEEASRQLDQL--------DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 145 ~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
..++ ..+++.|-..|...|++++|.++++.+.+. .+.....++.|...|.+.+...+|.++|.+-..-
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1122 357999999999999999999999998651 1222345567888899999999999999876543
Q ss_pred C--CccCCceeEEEECCEEEEEEeCCCCchhHHHHHHHHHHHH
Q 048117 213 G--VKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWEKLL 253 (352)
Q Consensus 213 g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (352)
. ..|+.......+. .+...|..-|..+++.+..+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~----nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYL----NLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHH----HHHHHHHHcccHHHHHHHHHHHH
Confidence 2 1222211111111 22333455566777777665555
No 49
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.71 E-value=8.2e-06 Score=81.51 Aligned_cols=194 Identities=12% Similarity=0.046 Sum_probs=118.9
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEE--R-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 90 (352)
+...+..+...+.+.|++++|..+|++..+ | +...+..+...+...|+.++|+..+++..+. .+.+.. +..+..+
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~ 125 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYV 125 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHH
Confidence 445677788888888888888888887542 2 4566777777778888888888888887764 223344 6667777
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCC-------------------------
Q 048117 91 CGHMGWVDEGRRFFYSMTTEYGIIP-QIEHYGCMVDLLSRAGFLQEAYEFIRNMP------------------------- 144 (352)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~------------------------- 144 (352)
+...|+.++|...+++..+ ..| +...+..+...+.+.|..++|++.++...
T Consensus 126 l~~~g~~~~Al~~l~~al~---~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~ 202 (765)
T PRK10049 126 YKRAGRHWDELRAMTQALP---RAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPT 202 (765)
T ss_pred HHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 7788888888888877773 233 34445555666655555554444333211
Q ss_pred -------------------------CCCCcch-HH----HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-hHHHHHHHH
Q 048117 145 -------------------------IKPNGVV-WG----ALLGGCRVHKNIDLAEEASRQLDQLDPLNNG-YHVVLSNIY 193 (352)
Q Consensus 145 -------------------------~~p~~~~-~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~ 193 (352)
..|+... +. ..+..+...|+.++|...|+.+.+..++.+. ....+..+|
T Consensus 203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~y 282 (765)
T PRK10049 203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAY 282 (765)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence 1121111 10 0123345567777777777777665432221 222345667
Q ss_pred HHccCHHHHHHHHHHHHhc
Q 048117 194 AEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 194 ~~~g~~~~a~~~~~~m~~~ 212 (352)
...|++++|...|+.+.+.
T Consensus 283 l~~g~~e~A~~~l~~~l~~ 301 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYH 301 (765)
T ss_pred HhcCCcHHHHHHHHHHhhc
Confidence 7777777777777776543
No 50
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.66 E-value=5.4e-06 Score=67.54 Aligned_cols=163 Identities=16% Similarity=0.107 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhhHHHHH
Q 048117 47 FTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN-GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMV 124 (352)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li 124 (352)
.+.-.|--+|.+.|+...|..-+++..+. .|+ ..++..+...|.+.|..+.|.+-|+... .+.|+ ..+.|..-
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG 110 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhh
Confidence 35666778899999999999999999885 455 4588889999999999999999998877 34454 57888888
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCC----CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHH
Q 048117 125 DLLSRAGFLQEAYEFIRNMPIKP----NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWE 200 (352)
Q Consensus 125 ~~~~~~g~~~~A~~~~~~m~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 200 (352)
..+|..|++++|...|++.--.| -..||..+.-+..+.|+.+.|...+++.....|..+.....+.....+.|++-
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence 88999999999999999882222 25688888888899999999999999999999988888888888889999999
Q ss_pred HHHHHHHHHHhcCC
Q 048117 201 DVARVRKLMRNLGV 214 (352)
Q Consensus 201 ~a~~~~~~m~~~g~ 214 (352)
.|...++.....+.
T Consensus 191 ~Ar~~~~~~~~~~~ 204 (250)
T COG3063 191 PARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHHhccc
Confidence 99999998877665
No 51
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.61 E-value=6.8e-08 Score=55.39 Aligned_cols=35 Identities=40% Similarity=0.732 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccH
Q 048117 47 FTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNG 81 (352)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 81 (352)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999873
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.60 E-value=5.6e-05 Score=66.44 Aligned_cols=198 Identities=16% Similarity=0.095 Sum_probs=152.2
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhcc---cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccH-------
Q 048117 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEME---ERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNG------- 81 (352)
Q Consensus 12 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------- 81 (352)
.++..++-+........|+.+.|+.-.++.. .++.........+|.+.|++.+...+...|.+.|+--|.
T Consensus 150 ~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~ 229 (400)
T COG3071 150 DDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ 229 (400)
T ss_pred CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH
Confidence 4556667777777778888888877666544 457888889999999999999999999999888765543
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-C----------------
Q 048117 82 VTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-P---------------- 144 (352)
Q Consensus 82 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---------------- 144 (352)
.+|..+++-+...+..+.-...++...+ ...-++..-.+++.-+.++|+.++|.++.++. +
T Consensus 230 ~a~~glL~q~~~~~~~~gL~~~W~~~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~ 307 (400)
T COG3071 230 QAWEGLLQQARDDNGSEGLKTWWKNQPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRP 307 (400)
T ss_pred HHHHHHHHHHhccccchHHHHHHHhccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCC
Confidence 3678888888877777777777777765 34445556677788888899999888877654 1
Q ss_pred ----------------CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHH
Q 048117 145 ----------------IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKL 208 (352)
Q Consensus 145 ----------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (352)
..-++..+.+|-..|.+++.+.+|...|+...+..|. ...+..+.+++.+.|+..+|.+++++
T Consensus 308 ~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 308 GDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred CCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 1224567888888899999999999999988777775 46888899999999999999999887
Q ss_pred HHhc
Q 048117 209 MRNL 212 (352)
Q Consensus 209 m~~~ 212 (352)
-...
T Consensus 387 ~L~~ 390 (400)
T COG3071 387 ALLL 390 (400)
T ss_pred HHHH
Confidence 6543
No 53
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.57 E-value=1.6e-06 Score=75.74 Aligned_cols=192 Identities=14% Similarity=0.034 Sum_probs=129.1
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhc-ccC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 048117 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEM-EER----TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIG 86 (352)
Q Consensus 12 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 86 (352)
.|.......+...+...++-+.+..-+++. .++ |....-.....+...|++++|++++.+- .+......
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 455555544444333334444554444432 222 2222222223445579999999988752 45566677
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHh
Q 048117 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE---HYGCMVDLLSRAGFLQEAYEFIRNM--PIKPNGVVWGALLGGCRV 161 (352)
Q Consensus 87 ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~ 161 (352)
.+..+.+.++++.|.+.++.|.+ +..|.. ...+.++.+.-...+.+|..+|+++ ...+++.+.+.+..+...
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~ 213 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ 213 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 88999999999999999999983 344532 2334444444445799999999999 334677888899999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCH-HHHHHHHHHHHhc
Q 048117 162 HKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERW-EDVARVRKLMRNL 212 (352)
Q Consensus 162 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~ 212 (352)
.|++++|+.++.+.....|.++.+...++.+..-.|+. +.+.+.+.+++..
T Consensus 214 ~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 214 LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999998888888888888888888888888 7788888888764
No 54
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.56 E-value=1.8e-05 Score=67.32 Aligned_cols=166 Identities=12% Similarity=-0.076 Sum_probs=108.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-hh
Q 048117 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNG----VTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI-EH 119 (352)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~-~~ 119 (352)
....+-.+...+.+.|++++|...|++.... .|+. .++..+..++.+.|++++|...++.+.+...-.|.. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4556666666777777777777777777553 2321 345556667777777777777777776432111211 13
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHhC-CCCCCcc-hH-----------------HHHHHHHHhcCCHHHHHHHH
Q 048117 120 YGCMVDLLSRA--------GFLQEAYEFIRNM-PIKPNGV-VW-----------------GALLGGCRVHKNIDLAEEAS 172 (352)
Q Consensus 120 ~~~li~~~~~~--------g~~~~A~~~~~~m-~~~p~~~-~~-----------------~~li~~~~~~g~~~~a~~~~ 172 (352)
+..+...+.+. |+.++|.+.|++. ...|+.. .+ ..+...+.+.|+.++|...+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 189 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF 189 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 33344444433 5667777777766 2234322 12 13345678889999999999
Q ss_pred HHHHhcCCCC---cchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 173 RQLDQLDPLN---NGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 173 ~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
....+..|.. ...+..+..+|.+.|++++|...++.+...
T Consensus 190 ~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 190 ETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9998865543 356778999999999999999999988754
No 55
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.5e-05 Score=71.30 Aligned_cols=191 Identities=14% Similarity=0.150 Sum_probs=153.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 048117 16 RVCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACG 92 (352)
Q Consensus 16 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 92 (352)
.|...+-+-|+-.++-++|...|+...+. -...|+.|.+-|....+...|++-|+...+- .+-|-..|-.|-++|.
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYE 409 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHH
Confidence 34555556667778888999999977654 4578999999999999999999999999875 3457889999999999
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCCHHHHH
Q 048117 93 HMGWVDEGRRFFYSMTTEYGIIP-QIEHYGCMVDLLSRAGFLQEAYEFIRNM--PIKPNGVVWGALLGGCRVHKNIDLAE 169 (352)
Q Consensus 93 ~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~ 169 (352)
-.+...-|+-.|+... .++| |...|.+|.+.|.+.+++++|.+.|+.. .-..+...+..|...|-+.++.++|.
T Consensus 410 im~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999998877 3455 5889999999999999999999999998 21234578999999999999999999
Q ss_pred HHHHHHHh-------cCCCCcchHHHHHHHHHHccCHHHHHHHHHHHH
Q 048117 170 EASRQLDQ-------LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 170 ~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
+.|..-.+ ..|.......-|...+.+.+++++|...-....
T Consensus 487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 99988665 122222233457788899999999987655443
No 56
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=1e-05 Score=75.99 Aligned_cols=227 Identities=15% Similarity=0.115 Sum_probs=167.5
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 048117 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH 89 (352)
Q Consensus 10 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 89 (352)
+++|--..-..+...+.++|-...|..+|+.. ..|...|.+|...|+..+|..+..+-.+ -+||+.-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 44555566667888899999999999999975 5688889999999999999998888777 4789999999999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHH
Q 048117 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDL 167 (352)
Q Consensus 90 a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~ 167 (352)
......-+++|.++.+....+ .-..+.....+.++++++.+.|+.- .++| -..+|-.+--+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 988888899999988766532 1111111223468888888888765 4444 45678888788888889999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEEeCCCCchhHHHHHH
Q 048117 168 AEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQ 247 (352)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
+.+.|.......|++...++.+..+|.+.|+-.+|...+++..+.+.. .|..+.++..... .-+..+++++
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-----~w~iWENymlvsv----dvge~eda~~ 608 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-----HWQIWENYMLVSV----DVGEFEDAIK 608 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-----CCeeeechhhhhh----hcccHHHHHH
Confidence 999999888899998889999999999999999999999888877644 3444444432211 2245566665
Q ss_pred HHHHHHHHHHHcCc
Q 048117 248 MWEKLLDGMKLKGY 261 (352)
Q Consensus 248 ~~~~l~~~m~~~g~ 261 (352)
...++++ |...+-
T Consensus 609 A~~rll~-~~~~~~ 621 (777)
T KOG1128|consen 609 AYHRLLD-LRKKYK 621 (777)
T ss_pred HHHHHHH-hhhhcc
Confidence 4444332 444444
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.54 E-value=4.1e-05 Score=65.52 Aligned_cols=199 Identities=13% Similarity=0.074 Sum_probs=139.6
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhccc-CCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEE-RTV------FTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIG 86 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 86 (352)
...+.-+|=+.|-+.|.++.|..+.....+ ||. ...-.|..-|-..|-++.|.++|..+.+.|. --......
T Consensus 68 t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~Alqq 146 (389)
T COG2956 68 TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQ 146 (389)
T ss_pred hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHH
Confidence 344555777888888888888888886654 432 3344556667778888888888888876542 12334566
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHH-HHHHH
Q 048117 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQ----IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGVVWGAL-LGGCR 160 (352)
Q Consensus 87 ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l-i~~~~ 160 (352)
|+..|-...++++|.++-+++.+ .+-.+. ..-|.-|...+....+++.|..++++. ...|+.+--+.+ -....
T Consensus 147 Ll~IYQ~treW~KAId~A~~L~k-~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~ 225 (389)
T COG2956 147 LLNIYQATREWEKAIDVAERLVK-LGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVEL 225 (389)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH-cCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHH
Confidence 88888888888888888887774 233332 123444555556677888888888887 445544444433 35678
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC-cchHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 048117 161 VHKNIDLAEEASRQLDQLDPLN-NGYHVVLSNIYAEAERWEDVARVRKLMRNLGV 214 (352)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 214 (352)
..|+++.|.+.++.+.+.+|.- +.+...|..+|...|+.++....+..+.+...
T Consensus 226 ~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 226 AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 8899999999999988876642 23445788999999999999999988876543
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.53 E-value=6.2e-05 Score=61.50 Aligned_cols=193 Identities=13% Similarity=0.038 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHh
Q 048117 17 VCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN-GVTFIGLLHACG 92 (352)
Q Consensus 17 ~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~ 92 (352)
+..-|--.|...|+...|++-+++..+. +..+|..+-..|-+.|..+.|.+-|++.... .|+ ....|..--.+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHH
Confidence 3455667899999999999999988764 4578999999999999999999999998874 454 456677777788
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHH
Q 048117 93 HMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEE 170 (352)
Q Consensus 93 ~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~ 170 (352)
..|++++|.+.|+.........--..+|..+.-+-.+.|+.+.|...|++. ...| ...+.-.+.......|+.-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 999999999999998865333333578888888888999999999999987 3344 34566778888899999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 171 ASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
+++......+......-..|..-...|+-+.+.+.=..+.+
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999886666566666777777889999988877666654
No 59
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=1.6e-05 Score=70.83 Aligned_cols=182 Identities=13% Similarity=0.112 Sum_probs=142.3
Q ss_pred cCCHHHHHHHHHhcccCCHHHHHHHHH---HHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHH
Q 048117 28 CGCLEGARRVFIEMEERTVFTWSAMIQ---GLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF 104 (352)
Q Consensus 28 ~g~~~~A~~~f~~m~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 104 (352)
.|++++|.+.|++....|..+-.+|.+ .+-..|+.++|++.|-++... +.-+..+...+.+.|-...+..+|.+++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 589999999999988887765555443 355689999999999988543 3446667788888999999999999988
Q ss_pred HHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048117 105 YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182 (352)
Q Consensus 105 ~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 182 (352)
-+.. .-++.|+.+.+.|.+.|-+.|+-..|.+..-+- ..-| +..+...|..-|....-.+++...|++..-..|..
T Consensus 582 ~q~~--slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 582 MQAN--SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred HHhc--ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence 6554 245667889999999999999999998876555 3333 66676677777888888899999999987777865
Q ss_pred cchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 183 NGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
...-..+..++.+.|++.+|..+|+...++
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 443345556678899999999999988654
No 60
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.52 E-value=2.1e-05 Score=72.74 Aligned_cols=201 Identities=11% Similarity=0.004 Sum_probs=140.1
Q ss_pred HHHHhCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048117 5 YSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWS----AMIQGLAIHGQAKEALTSFNKMIEIGI 77 (352)
Q Consensus 5 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~----~li~~~~~~g~~~~A~~l~~~m~~~g~ 77 (352)
.+.+.. +-+..+...+...|.+.|++++|.+++....+. +...+. ....+....+..+++.+.+.++.+...
T Consensus 178 ~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p 256 (409)
T TIGR00540 178 KLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP 256 (409)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC
Confidence 344443 346788999999999999999999999998854 333332 111122333344444456666654321
Q ss_pred ---CccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhh-HHHHHHHH--HhcCCHHHHHHHHHhC-CCCCCc-
Q 048117 78 ---KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH-YGCMVDLL--SRAGFLQEAYEFIRNM-PIKPNG- 149 (352)
Q Consensus 78 ---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~-~~~li~~~--~~~g~~~~A~~~~~~m-~~~p~~- 149 (352)
+.+...+..+...+...|+.++|.+++++..++ .||... ...++..+ ...++.+.+.+.++.. ...|+.
T Consensus 257 ~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~ 333 (409)
T TIGR00540 257 RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKP 333 (409)
T ss_pred HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCCh
Confidence 137778888999999999999999999998853 344331 11133333 3457788888888776 444544
Q ss_pred --chHHHHHHHHHhcCCHHHHHHHHHH--HHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHH
Q 048117 150 --VVWGALLGGCRVHKNIDLAEEASRQ--LDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 150 --~~~~~li~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
....++-..+.+.|++++|.+.|+. ..+..|++ ..+..+...+.+.|+.++|.+++++-.
T Consensus 334 ~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 334 KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456788889999999999999995 55566765 456689999999999999999998753
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=4.6e-06 Score=71.27 Aligned_cols=190 Identities=14% Similarity=0.092 Sum_probs=108.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHH-HHHHHHhccC
Q 048117 19 NTLIDMYVKCGCLEGARRVFIEME--ERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFI-GLLHACGHMG 95 (352)
Q Consensus 19 ~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~g 95 (352)
+-+-.+|.+.|.+.+|++.|+... .|-+.||-.|-.+|.+..++..|+.+|.+-.+ ..|-.+||. .....+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHHHH
Confidence 345556666666666666666443 24555666666666666666666666666554 245445443 2333444455
Q ss_pred CHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC---CCC--------------------------
Q 048117 96 WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM---PIK-------------------------- 146 (352)
Q Consensus 96 ~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~-------------------------- 146 (352)
+.+++.++++...+ --+.++....++...|.-.++++-|++.++++ |+.
T Consensus 305 ~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 55555555555442 11222333344444444444444444444433 322
Q ss_pred --------CC--cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 147 --------PN--GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 147 --------p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
|+ ...|-.+-......|++..|.+.|+.....+++....++.|.-.-.+.|+++.|..+++.....
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 21 2234444444555666677777777777667776777777777778999999999999887654
No 62
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.50 E-value=4.5e-06 Score=72.95 Aligned_cols=163 Identities=15% Similarity=0.073 Sum_probs=121.7
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhc
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH 93 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 93 (352)
+..+.-..-.+|...|++++|.++++.- .+.......+..|.+.++++.|.+.++.|++. ..|. +...+..++..
T Consensus 101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~ 175 (290)
T PF04733_consen 101 NEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVN 175 (290)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHH
Confidence 3333334445667789999999998876 56777778899999999999999999999875 3443 33344444433
Q ss_pred ----cCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCH-H
Q 048117 94 ----MGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNI-D 166 (352)
Q Consensus 94 ----~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~-~ 166 (352)
...+.+|..+|+++.. ...+++.+.|.+..+....|++++|.+++.+. ...| +..+...++......|+. +
T Consensus 176 l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~ 253 (290)
T PF04733_consen 176 LATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTE 253 (290)
T ss_dssp HHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCH
T ss_pred HHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChh
Confidence 3469999999999985 45678889999999999999999999999886 3334 556777778887888887 7
Q ss_pred HHHHHHHHHHhcCCCCc
Q 048117 167 LAEEASRQLDQLDPLNN 183 (352)
Q Consensus 167 ~a~~~~~~~~~~~~~~~ 183 (352)
.+.+++.++....|..+
T Consensus 254 ~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 254 AAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHhCCCCh
Confidence 88899999988888653
No 63
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.50 E-value=2.2e-07 Score=52.87 Aligned_cols=33 Identities=36% Similarity=0.635 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 048117 47 FTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP 79 (352)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 79 (352)
.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 64
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=2.9e-05 Score=66.40 Aligned_cols=186 Identities=11% Similarity=0.117 Sum_probs=143.9
Q ss_pred cCCHHHHHHHHHhcccCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHc-CCCccHH--HHHHHHHHHhccCCHHHHH
Q 048117 28 CGCLEGARRVFIEMEERTVFTWS---AMIQGLAIHGQAKEALTSFNKMIEI-GIKPNGV--TFIGLLHACGHMGWVDEGR 101 (352)
Q Consensus 28 ~g~~~~A~~~f~~m~~~~~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~--t~~~ll~a~~~~g~~~~a~ 101 (352)
..+.++|.++|-+|.+-|..|+. +|.+-|-+.|..+.|+.+-.-+.+. +.+-+.. ..-.|-.-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 46789999999999987766655 6888899999999999999888754 2222222 2445667788899999999
Q ss_pred HHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC---CCCCC----cchHHHHHHHHHhcCCHHHHHHHHHH
Q 048117 102 RFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM---PIKPN----GVVWGALLGGCRVHKNIDLAEEASRQ 174 (352)
Q Consensus 102 ~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~ 174 (352)
.+|..+..+.... ....--|+..|-...+|++|.++-+++ +-++. ...|.-+...+....+.+.|..++.+
T Consensus 128 ~~f~~L~de~efa--~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 128 DIFNQLVDEGEFA--EGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHhcchhhh--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999888532222 345667889999999999999988866 21221 22355566666777889999999999
Q ss_pred HHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Q 048117 175 LDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVK 215 (352)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 215 (352)
..+..|........+-+.+...|+++.|.+.++...+.+..
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChH
Confidence 99999988888889999999999999999999999887654
No 65
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=1.9e-05 Score=70.97 Aligned_cols=189 Identities=19% Similarity=0.169 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHh
Q 048117 17 VCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP-NGVTFIGLLHACG 92 (352)
Q Consensus 17 ~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~ 92 (352)
.|--+-.+|....+-++..+.|+...+ .|..+|..-...+.-.+++++|..=|++.+. +.| +...|.-+--+.-
T Consensus 362 lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 362 LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALY 439 (606)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHH
Confidence 377788889999999999999998774 2667888877888888999999999999876 455 4557877777778
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---------cchHHHHHHHHHhc
Q 048117 93 HMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPN---------GVVWGALLGGCRVH 162 (352)
Q Consensus 93 ~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---------~~~~~~li~~~~~~ 162 (352)
+.++++++...|++.++ .++..+.+||-....+...+++++|.+.|+.. ..+|+ +..--+++-. .=.
T Consensus 440 r~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk 516 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWK 516 (606)
T ss_pred HHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh-chh
Confidence 89999999999999995 56666789999999999999999999999887 33333 1111122211 123
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHH
Q 048117 163 KNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 163 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
+++..|.++++...+.+|.....+..|...-.+.|++++|.++|++-.
T Consensus 517 ~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 517 EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 789999999999999999888899999999999999999999998754
No 66
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=1.9e-05 Score=72.41 Aligned_cols=185 Identities=14% Similarity=0.151 Sum_probs=144.6
Q ss_pred HHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHhccCC----
Q 048117 25 YVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN-GVTFIGLLHACGHMGW---- 96 (352)
Q Consensus 25 ~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---- 96 (352)
+.+.|++.+|.-.|+..... +...|--|....+.+++-..|+..+++..+ +.|+ ....-.|.-.|...|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhHHHH
Confidence 46789999999999976654 567888888888888888888888888876 3453 3344444333433332
Q ss_pred -------------------------------------HHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 048117 97 -------------------------------------VDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEF 139 (352)
Q Consensus 97 -------------------------------------~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 139 (352)
+....++|-++....+..+|..++..|--.|--.|.++.|.+.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 2344555555555556567888899999999999999999999
Q ss_pred HHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 140 IRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 140 ~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
|+.. .++| |...||-|-..++...+.++|...|.+.+++.|.-......|.-.|...|.+++|.+.|-....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9998 7777 6778999999999999999999999999999998777777777789999999999998876544
No 67
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.42 E-value=2.8e-05 Score=66.12 Aligned_cols=162 Identities=14% Similarity=0.071 Sum_probs=122.2
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHH----H
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEE--R-TV---FTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGV----T 83 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t 83 (352)
....+-.+...|.+.|+++.|...|+.... | +. .+|..+..++.+.|++++|+..|+++.+.. |+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHHH
Confidence 456777888889999999999999998764 3 22 467888899999999999999999998642 3211 3
Q ss_pred HHHHHHHHhcc--------CCHHHHHHHHHHhHHhcCCCCCh-hhH-----------------HHHHHHHHhcCCHHHHH
Q 048117 84 FIGLLHACGHM--------GWVDEGRRFFYSMTTEYGIIPQI-EHY-----------------GCMVDLLSRAGFLQEAY 137 (352)
Q Consensus 84 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~g~~~~~-~~~-----------------~~li~~~~~~g~~~~A~ 137 (352)
+..+-.++.+. |+.++|.+.++.+... .|+. ..+ ..+...|.+.|++++|.
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 186 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAI 186 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 44444455443 7889999999998854 2332 121 13456788899999999
Q ss_pred HHHHhC-CCCC----CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 048117 138 EFIRNM-PIKP----NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180 (352)
Q Consensus 138 ~~~~~m-~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 180 (352)
..+++. ...| ....|..+..++...|+.++|...++.+....|
T Consensus 187 ~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 187 NRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999887 2223 246788999999999999999999988876544
No 68
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.40 E-value=9.5e-06 Score=77.70 Aligned_cols=208 Identities=12% Similarity=0.088 Sum_probs=136.0
Q ss_pred hHhHHHHhCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HH-------
Q 048117 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK-MI------- 73 (352)
Q Consensus 2 i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~-m~------- 73 (352)
|+..|.-..+..+..++++++.+..++++.+.+. +|...+|+.|..+|.++|+... ++..++ |.
T Consensus 46 if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs 117 (1088)
T KOG4318|consen 46 IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFS 117 (1088)
T ss_pred chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhh
Confidence 5677887888889999999999999999988876 7888999999999999999654 232222 21
Q ss_pred HcCCCccHHHHHHHHHH--------------HhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcC-CHHHHHH
Q 048117 74 EIGIKPNGVTFIGLLHA--------------CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG-FLQEAYE 138 (352)
Q Consensus 74 ~~g~~p~~~t~~~ll~a--------------~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~ 138 (352)
..|+..-..-|-..+.+ ....|.++.+.+++..+.......|..+ .++-..... .+++-..
T Consensus 118 ~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~ 193 (1088)
T KOG4318|consen 118 DHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLN 193 (1088)
T ss_pred hhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHH
Confidence 12332222222222222 2233444444444433321101111111 122222222 2333333
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccC
Q 048117 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL-DPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKT 217 (352)
Q Consensus 139 ~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 217 (352)
..+...-.|++.+|.+++.+-..+|+++.|..++.+|++. -|..+.++-.|+-. .++..-+..+.+-|.+.|+.|+
T Consensus 194 ~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~ 270 (1088)
T KOG4318|consen 194 MCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPG 270 (1088)
T ss_pred HHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCC
Confidence 3344433689999999999999999999999999999984 45555555566533 8899999999999999999999
Q ss_pred CceeEEE
Q 048117 218 PGWSSIT 224 (352)
Q Consensus 218 ~~~~~~~ 224 (352)
..|....
T Consensus 271 seT~ady 277 (1088)
T KOG4318|consen 271 SETQADY 277 (1088)
T ss_pred cchhHHH
Confidence 8876543
No 69
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=3.8e-05 Score=70.26 Aligned_cols=195 Identities=14% Similarity=0.076 Sum_probs=150.8
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 048117 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERT---VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88 (352)
Q Consensus 12 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 88 (352)
+....+|-++---|.-.|..++|++.|.+.-.-| ...|-.....|+-.|..++|+..|...-+- ++-...-+--+-
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlg 387 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLG 387 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHH
Confidence 3456778887777777888999999998765433 367888888898889999998888877542 111111222234
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhC--CC---CC----CcchHHHHHHH
Q 048117 89 HACGHMGWVDEGRRFFYSMTTEYGIIP-QIEHYGCMVDLLSRAGFLQEAYEFIRNM--PI---KP----NGVVWGALLGG 158 (352)
Q Consensus 89 ~a~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~---~p----~~~~~~~li~~ 158 (352)
--|.+.+..+.|.+.|.+.. ++.| |+.+.+-+--.....+.+.+|..+|+.. .+ .+ -..+++.|-.+
T Consensus 388 mey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 46788899999999998776 5655 4677787777777889999999999876 11 11 12357788889
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHH
Q 048117 159 CRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
|.+.+..++|...++......|.+..++.++.-.|...|+++.|...|.+-.
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998754
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.36 E-value=0.0002 Score=67.37 Aligned_cols=199 Identities=15% Similarity=0.172 Sum_probs=136.0
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhcccCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHH------------
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEERT---VFTWSAMIQGLAIH-----GQAKEALTSFNKMIE------------ 74 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~------------ 74 (352)
..+.......|.+.|+.++|..+|..+.++| ..-|..+..+.... ...+...++|+++..
T Consensus 38 ~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~ 117 (517)
T PF12569_consen 38 LAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLP 117 (517)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhh
Confidence 4555667788888899999999988887642 23344444444222 235566666666543
Q ss_pred ----------------------cCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---C----------CCCChh-
Q 048117 75 ----------------------IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY---G----------IIPQIE- 118 (352)
Q Consensus 75 ----------------------~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---g----------~~~~~~- 118 (352)
.|++ .+|+.|-..|......+-..+++..+.... + -+|+..
T Consensus 118 L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~l 194 (517)
T PF12569_consen 118 LDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLL 194 (517)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHH
Confidence 2222 233334444444444444555555544221 0 123333
Q ss_pred -hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 048117 119 -HYGCMVDLLSRAGFLQEAYEFIRNM-PIKPN-GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAE 195 (352)
Q Consensus 119 -~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 195 (352)
++.-|...|.+.|++++|++++++. ...|+ +..|.+-...+...|++++|.+..+...++++.|....+-.+..+.+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 4456678889999999999999977 55565 45677888889999999999999999999998876666677788899
Q ss_pred ccCHHHHHHHHHHHHhcCCcc
Q 048117 196 AERWEDVARVRKLMRNLGVKK 216 (352)
Q Consensus 196 ~g~~~~a~~~~~~m~~~g~~~ 216 (352)
+|++++|.+++..+.+.+..|
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCc
Confidence 999999999999998877643
No 71
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.35 E-value=2.7e-05 Score=70.44 Aligned_cols=120 Identities=10% Similarity=0.043 Sum_probs=55.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHH
Q 048117 21 LIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG 100 (352)
Q Consensus 21 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 100 (352)
|+..+...++++.|..+|+++.+.++..+..|...+...++-.+|++++++..+. .+-|......-...|.+.++.+.|
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHH
Confidence 3333444455555555555555444444444444444445555555555555432 112333333333444455555555
Q ss_pred HHHHHHhHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 048117 101 RRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGFLQEAYEFIRNMP 144 (352)
Q Consensus 101 ~~~~~~m~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 144 (352)
..+.+++. ...|+ ..+|..|...|.+.|+++.|+..++.+|
T Consensus 254 L~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 254 LEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 55555444 22333 2355555555555555555555555554
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.32 E-value=0.00018 Score=63.50 Aligned_cols=175 Identities=13% Similarity=-0.030 Sum_probs=120.6
Q ss_pred CCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 048117 11 FRR-NIRVCNTLIDMYVKCGCLEGARRVFIEMEE--R-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIG 86 (352)
Q Consensus 11 ~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 86 (352)
+.| +..+|+.+-..|...|++++|...|+...+ | +..+|..+...+...|++++|++.|++..+. .|+......
T Consensus 93 l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~ 170 (296)
T PRK11189 93 LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRAL 170 (296)
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 344 578899999999999999999999998864 3 5688999999999999999999999999874 455432222
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHH--HHHHHhC-CCC----C-CcchHHHHHHH
Q 048117 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA--YEFIRNM-PIK----P-NGVVWGALLGG 158 (352)
Q Consensus 87 ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A--~~~~~~m-~~~----p-~~~~~~~li~~ 158 (352)
....+...++.++|...+..... ...|+... ..+... ..|+.+++ .+.+.+- ... | ....|..+-..
T Consensus 171 ~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~-~~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~ 245 (296)
T PRK11189 171 WLYLAESKLDPKQAKENLKQRYE--KLDKEQWG-WNIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKY 245 (296)
T ss_pred HHHHHHccCCHHHHHHHHHHHHh--hCCccccH-HHHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 22234457789999999976553 33343322 233333 34554433 3333221 111 1 23578899999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcc-hHHHHHHH
Q 048117 159 CRVHKNIDLAEEASRQLDQLDPLNNG-YHVVLSNI 192 (352)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~ 192 (352)
+.+.|+.++|...|++..+..|++.. .-.+++..
T Consensus 246 ~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~ 280 (296)
T PRK11189 246 YLSLGDLDEAAALFKLALANNVYNFVEHRYALLEL 280 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 99999999999999999988775433 22344443
No 73
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.29 E-value=8.4e-07 Score=49.23 Aligned_cols=31 Identities=42% Similarity=0.652 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048117 47 FTWSAMIQGLAIHGQAKEALTSFNKMIEIGI 77 (352)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 77 (352)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777776653
No 74
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.29 E-value=0.00013 Score=60.14 Aligned_cols=118 Identities=9% Similarity=0.003 Sum_probs=76.0
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHH-HHhcCC--HHHH
Q 048117 94 MGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGG-CRVHKN--IDLA 168 (352)
Q Consensus 94 ~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~-~~~~g~--~~~a 168 (352)
.++.+++...++...+ .-+.|...|..|...|...|++++|...|++. ...| +...+..+..+ +.+.|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4455555555555442 22445667777777777777777777777766 3344 44455555554 355555 4777
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 169 EEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
.+++++..+..|.+...+..+...+.+.|++++|...|+++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 777777777777777777777777777777777777777776543
No 75
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.28 E-value=0.00021 Score=58.95 Aligned_cols=155 Identities=12% Similarity=0.091 Sum_probs=117.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHH
Q 048117 20 TLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDE 99 (352)
Q Consensus 20 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 99 (352)
.-+..|...|+++......+.+..+. ..+...++.++++..+++..+.. +.|...|..+...|...|++++
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 34567889999888765554333221 11223667788888888877652 4577789999999999999999
Q ss_pred HHHHHHHhHHhcCCCC-ChhhHHHHHHH-HHhcCC--HHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHH
Q 048117 100 GRRFFYSMTTEYGIIP-QIEHYGCMVDL-LSRAGF--LQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASR 173 (352)
Q Consensus 100 a~~~~~~m~~~~g~~~-~~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~ 173 (352)
|...++...+ +.| +...+..+..+ |.+.|+ .++|.+++++. ...| +...+..+-..+.+.|++++|...|+
T Consensus 92 A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 92 ALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999998873 334 57788888876 467787 59999999998 4455 56778888899999999999999999
Q ss_pred HHHhcCCCCcchH
Q 048117 174 QLDQLDPLNNGYH 186 (352)
Q Consensus 174 ~~~~~~~~~~~~~ 186 (352)
++.+..|++..-+
T Consensus 169 ~aL~l~~~~~~r~ 181 (198)
T PRK10370 169 KVLDLNSPRVNRT 181 (198)
T ss_pred HHHhhCCCCccHH
Confidence 9999777655443
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=3.4e-05 Score=66.15 Aligned_cols=159 Identities=11% Similarity=0.021 Sum_probs=132.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHh
Q 048117 50 SAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129 (352)
Q Consensus 50 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~ 129 (352)
+-|..+|.+.|.+.+|.+.|+.-... .|-..||..|-++|.+..+.+.|+.++.+-.. ..+-|+....-+...+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHH
Confidence 57889999999999999999988764 67778888899999999999999999998773 333344434456677888
Q ss_pred cCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHH
Q 048117 130 AGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRK 207 (352)
Q Consensus 130 ~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 207 (352)
.++.++|.++++.. ...| ++.....+..+|.-.+++|.|.++++++.+++..++..|..+--+|.-.+++|-++.-|.
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 99999999999988 4344 555666677788889999999999999999988888899888888888999999999888
Q ss_pred HHHhc
Q 048117 208 LMRNL 212 (352)
Q Consensus 208 ~m~~~ 212 (352)
+....
T Consensus 383 RAlst 387 (478)
T KOG1129|consen 383 RALST 387 (478)
T ss_pred HHHhh
Confidence 77643
No 77
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.26 E-value=0.00026 Score=59.02 Aligned_cols=154 Identities=12% Similarity=0.065 Sum_probs=113.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHh
Q 048117 50 SAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129 (352)
Q Consensus 50 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~ 129 (352)
..+-..+...|+.+.+..+....... .+-|............+.|++.+|...+.+... .-++|...|+.+--+|-+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44556666777777777766664322 223444555577888888888888888888873 667778888888888888
Q ss_pred cCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHH
Q 048117 130 AGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVR 206 (352)
Q Consensus 130 ~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 206 (352)
.|++++|..-|.+. .+.| +....|.|.-.+.-.|+.+.|..++.......+.+...-..|.-.....|++++|+.+-
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 88888888877776 3344 45667788888888888888888888877766666667777777788888888887763
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.26 E-value=0.00039 Score=63.00 Aligned_cols=192 Identities=12% Similarity=-0.008 Sum_probs=127.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHH---
Q 048117 16 RVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVF---TWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIG--- 86 (352)
Q Consensus 16 ~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~--- 86 (352)
..|..+...+...|+.+.|.+.+....+ ++.. ........+...|++++|.+++++..+. .+.|...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~P~~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD-YPRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHhHH
Confidence 4455566666677888877666665442 1221 2222234556789999999999998875 2233334331
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcC
Q 048117 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHK 163 (352)
Q Consensus 87 ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g 163 (352)
........+..+.+.+.+... ....|+ ......+...+...|++++|.+.+++. ...| +...+..+-..+...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLW---APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhcc---CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 122222345556666555441 133344 334455667888999999999999998 4445 4556788888999999
Q ss_pred CHHHHHHHHHHHHhcCCCCcc----hHHHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 164 NIDLAEEASRQLDQLDPLNNG----YHVVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
++++|...++......|.++. .+..+...+...|++++|..++++...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 999999999998876553222 234677889999999999999999854
No 79
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.25 E-value=3.9e-05 Score=59.86 Aligned_cols=117 Identities=9% Similarity=-0.060 Sum_probs=75.5
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 048117 67 TSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PI 145 (352)
Q Consensus 67 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 145 (352)
.+|++..+ +.|+. +.....++...|++++|...|+.... --+.+...|..+..++.+.|++++|...|+.. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444443 23443 33455666777777777777777662 22334666777777777777777777777776 33
Q ss_pred CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 048117 146 KP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189 (352)
Q Consensus 146 ~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 189 (352)
.| +...|..+-.++.+.|+.++|...|+...+..|+++..+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~ 132 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIR 132 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 34 556677777777777777777777777777777766555443
No 80
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.25 E-value=0.00021 Score=69.80 Aligned_cols=159 Identities=10% Similarity=-0.009 Sum_probs=113.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHH
Q 048117 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGV-TFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCM 123 (352)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~l 123 (352)
++..+-.|.....+.|..++|..+++...+ +.||.. ....+...+.+.+++++|....++... .-+-+....+.+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 566777788888888999999999988877 467655 566778888888999999988888773 323345667777
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHH
Q 048117 124 VDLLSRAGFLQEAYEFIRNM-PIKPN-GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWED 201 (352)
Q Consensus 124 i~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 201 (352)
...+.+.|+.++|..+|++. ...|+ ..+|..+-.++...|+.++|...|+...+...+....|+.+ .+++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~------~~~~~~ 234 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR------LVDLNA 234 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH------HHHHHH
Confidence 78888889999999999888 22343 66788888888888999999999988877443333333322 233444
Q ss_pred HHHHHHHHHhcC
Q 048117 202 VARVRKLMRNLG 213 (352)
Q Consensus 202 a~~~~~~m~~~g 213 (352)
-...++.+.-.+
T Consensus 235 ~~~~~~~~~~~~ 246 (694)
T PRK15179 235 DLAALRRLGVEG 246 (694)
T ss_pred HHHHHHHcCccc
Confidence 445555554433
No 81
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.22 E-value=6.7e-05 Score=58.53 Aligned_cols=116 Identities=12% Similarity=-0.050 Sum_probs=85.7
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 048117 35 RRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGII 114 (352)
Q Consensus 35 ~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~ 114 (352)
+.+|+...+.|+..+......+.+.|++++|...|++..... +.+...+..+..++...|++++|...|+.... --+
T Consensus 13 ~~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDA 89 (144)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCC
Confidence 345555555555566677778888889999999888887642 33566778888888888999999998888873 234
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHH
Q 048117 115 PQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGVVWG 153 (352)
Q Consensus 115 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~ 153 (352)
.+...+..+..++.+.|+.++|...|+.. ...|+...|.
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 45778888888888889999998888886 5566544443
No 82
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.20 E-value=0.00059 Score=64.32 Aligned_cols=192 Identities=13% Similarity=0.114 Sum_probs=133.6
Q ss_pred HHHHHHcCCHHHHHHHHHhcccC--CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHh----c-
Q 048117 22 IDMYVKCGCLEGARRVFIEMEER--TVF-TWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACG----H- 93 (352)
Q Consensus 22 i~~~~~~g~~~~A~~~f~~m~~~--~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~----~- 93 (352)
...+...|++++|.+.++.-... |.. ........+.+.|+.++|..+|.++.+.+ |+...|-..+..+. .
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 34567899999999999876653 544 45567778899999999999999999864 66666555544444 1
Q ss_pred -cCCHHHHHHHHHHhHHhcC-------CCC----------------------C-hhhHHHHHHHHHhcCCHHHHHHHHHh
Q 048117 94 -MGWVDEGRRFFYSMTTEYG-------IIP----------------------Q-IEHYGCMVDLLSRAGFLQEAYEFIRN 142 (352)
Q Consensus 94 -~g~~~~a~~~~~~m~~~~g-------~~~----------------------~-~~~~~~li~~~~~~g~~~~A~~~~~~ 142 (352)
....+...++++++...+- ++. . +.+++.|-..|....+.+-..+++..
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 2245666666666654221 000 0 23455555555544444444444444
Q ss_pred C----C-------------CCCCcchH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHH
Q 048117 143 M----P-------------IKPNGVVW--GALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVA 203 (352)
Q Consensus 143 m----~-------------~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 203 (352)
. . ..|....| ..+...|...|+.++|..+.++.....|..+..|..-...|-..|++.+|.
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 3 0 12334345 445666889999999999999999999998899999999999999999999
Q ss_pred HHHHHHHhcCCc
Q 048117 204 RVRKLMRNLGVK 215 (352)
Q Consensus 204 ~~~~~m~~~g~~ 215 (352)
+..+..++.+..
T Consensus 249 ~~~~~Ar~LD~~ 260 (517)
T PF12569_consen 249 EAMDEARELDLA 260 (517)
T ss_pred HHHHHHHhCChh
Confidence 999998876653
No 83
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.17 E-value=0.00017 Score=69.56 Aligned_cols=187 Identities=13% Similarity=0.110 Sum_probs=136.4
Q ss_pred HHHHHHcCCHHHHHHHHHhccc--C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------------------
Q 048117 22 IDMYVKCGCLEGARRVFIEMEE--R---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGI------------------- 77 (352)
Q Consensus 22 i~~~~~~g~~~~A~~~f~~m~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~------------------- 77 (352)
+..|-..++-+.|.+.++.... . +...+|.+...|.+..+++.|.....++.....
T Consensus 287 ~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~ 366 (895)
T KOG2076|consen 287 AHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNA 366 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccc
Confidence 3334445555666666665543 1 345677888888888888888888888876222
Q ss_pred --------CccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHhCC---
Q 048117 78 --------KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGI--IPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP--- 144 (352)
Q Consensus 78 --------~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--- 144 (352)
.++...+ -++-++.+....+....+..-...+ .+ .-++..|.-+.++|...|++.+|+.+|..+.
T Consensus 367 ~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~ 444 (895)
T KOG2076|consen 367 LCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE 444 (895)
T ss_pred cccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 2222221 2223344444445555555545533 53 3347789999999999999999999999992
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHH
Q 048117 145 IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 145 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
.--+...|-.+..+|...|..+.|.+.+..+....|++...-..|...|-+.|+.++|.+++..+.
T Consensus 445 ~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 445 GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 122566899999999999999999999999999999988888899999999999999999998876
No 84
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.13 E-value=0.0009 Score=62.69 Aligned_cols=192 Identities=15% Similarity=0.038 Sum_probs=158.0
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHAC 91 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 91 (352)
-.+|+.-.+.|.+.+.++-|+.+|....+ .+...|......=-.+|..++...+|++.... ++-....+....+-+
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEK 594 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHH
Confidence 35677777778888888888888887664 36678888888888889999999999999875 444455666667777
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCHHHHHH
Q 048117 92 GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGVVWGALLGGCRVHKNIDLAEE 170 (352)
Q Consensus 92 ~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~ 170 (352)
-..|++..|..++....+. .+-+...|-+-+........++.|..+|.+. ...|+...|.--+.-..-.++.++|.+
T Consensus 595 w~agdv~~ar~il~~af~~--~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEA--NPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HhcCCcHHHHHHHHHHHHh--CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 7889999999999888743 2235688999999999999999999999998 556888899888888888999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHH
Q 048117 171 ASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLM 209 (352)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 209 (352)
++++..+.-|+-...|..+-..+-+.++++.|...|..=
T Consensus 673 llEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G 711 (913)
T KOG0495|consen 673 LLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQG 711 (913)
T ss_pred HHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 999999988888888889999999999999999888753
No 85
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.10 E-value=0.00074 Score=59.58 Aligned_cols=159 Identities=13% Similarity=0.073 Sum_probs=119.8
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhcccC---------------------------------------------CHH
Q 048117 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEER---------------------------------------------TVF 47 (352)
Q Consensus 13 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---------------------------------------------~~~ 47 (352)
.++.+-......|.+.|++.....+...+.+. ++.
T Consensus 185 r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~ 264 (400)
T COG3071 185 RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPE 264 (400)
T ss_pred CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChh
Confidence 46777888888899999998888888887642 122
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHH
Q 048117 48 TWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127 (352)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~ 127 (352)
.-.+++.-+.+.|+.++|.++..+-.+.+..|+..+ +-.+.+.++.+.-.+..+.-.+..+..| ..+.+|-..|
T Consensus 265 l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~ 338 (400)
T COG3071 265 LVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLA 338 (400)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHH
Confidence 233445556667777777777777777766666332 2345566666666666655554444444 6788999999
Q ss_pred HhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048117 128 SRAGFLQEAYEFIRNM-PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177 (352)
Q Consensus 128 ~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 177 (352)
.+.+.+.+|...|+.. ..+|+..+|+-+-.++.+.|+.++|.+..++...
T Consensus 339 ~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 339 LKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 9999999999999987 7889999999999999999999999999998764
No 86
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.08 E-value=0.00011 Score=69.36 Aligned_cols=189 Identities=11% Similarity=-0.016 Sum_probs=148.0
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhcc--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEME--ERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACG 92 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 92 (352)
...|.-.|.+|...|+-.+|..+..+-. .||..-|..+.+.......+++|.++++.-... .-.++-.-..
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~ 496 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLIL 496 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccc
Confidence 4567788999999999999988877554 458889999999998888899999999886432 1111122223
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHH
Q 048117 93 HMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEE 170 (352)
Q Consensus 93 ~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~ 170 (352)
+.++++++.+.++.-.+-+ +....+|-.+-.+..+++++..|.+.|... ...| +...||.+-.+|.+.++..+|..
T Consensus 497 ~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred cchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHH
Confidence 4789999999888766321 234578888888888999999999999887 5566 46679999999999999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 171 ASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
.+.+..+....+...+...+....+.|.+++|.+.+.++.+.
T Consensus 575 ~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 575 KLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 999999866555566665556678999999999999988654
No 87
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.07 E-value=0.0019 Score=58.41 Aligned_cols=97 Identities=9% Similarity=0.023 Sum_probs=78.0
Q ss_pred hhHHHHHHHHH----hcCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 048117 118 EHYGCMVDLLS----RAGFLQEAYEFIRNM-PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNI 192 (352)
Q Consensus 118 ~~~~~li~~~~----~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 192 (352)
.|+.-+--+|+ ++.++..|.+++... |..|-..++...|..-.+.++++....+++.....+|.+..++.-....
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaEl 480 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAEL 480 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHH
Confidence 44444444443 556777777777666 7788889999999999999999999999999999999888888877777
Q ss_pred HHHccCHHHHHHHHHHHHhcCC
Q 048117 193 YAEAERWEDVARVRKLMRNLGV 214 (352)
Q Consensus 193 ~~~~g~~~~a~~~~~~m~~~g~ 214 (352)
=...|+++.|..+|....+...
T Consensus 481 E~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 481 ETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHhhhHHHHHHHHHHHhcCcc
Confidence 7889999999999998876543
No 88
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.07 E-value=0.00025 Score=59.16 Aligned_cols=136 Identities=17% Similarity=0.051 Sum_probs=111.3
Q ss_pred CCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHH
Q 048117 77 IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM--PIKPNGVVWGA 154 (352)
Q Consensus 77 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ 154 (352)
..|+......+-.++...|+-+....+...... .-..|....+.++....+.|++..|...|++. .-.+|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 345433335566777778888887777665542 33445566777899999999999999999998 44568999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 048117 155 LLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGV 214 (352)
Q Consensus 155 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 214 (352)
+--+|.+.|+.+.|...|.+..++.|.++...+.|.-.|.-.|+.+.|+.++......+.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999998876544
No 89
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.06 E-value=9.7e-06 Score=46.13 Aligned_cols=33 Identities=21% Similarity=0.151 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHccCHHHHHHHHHHHHhcCCccC
Q 048117 185 YHVVLSNIYAEAERWEDVARVRKLMRNLGVKKT 217 (352)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 217 (352)
+|+.++.+|++.|++++|.++|++|.+.|++|+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577888888888888888888888888888875
No 90
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.05 E-value=0.0015 Score=63.25 Aligned_cols=202 Identities=14% Similarity=0.107 Sum_probs=150.5
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHH
Q 048117 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP-NGVTFIGLL 88 (352)
Q Consensus 13 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll 88 (352)
|.+.-.-+..+...-.|++++|..++.+..+. +...|-+|-..|-+.|+.++++..+--.- .+.| |..-|..+-
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--HL~p~d~e~W~~la 214 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--HLNPKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHH--hcCCCChHHHHHHH
Confidence 33333444444444559999999999998864 67899999999999999999987765443 3444 566788888
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC--Cc----chHHHHHHHHHh
Q 048117 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP--NG----VVWGALLGGCRV 161 (352)
Q Consensus 89 ~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p--~~----~~~~~li~~~~~ 161 (352)
.-..+.|.+++|.-.|.+.++ --+++...+---+..|-+.|+...|.+-|.++ ...| |. .+-..++..+..
T Consensus 215 dls~~~~~i~qA~~cy~rAI~--~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQ--ANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 888899999999999999984 33555666666677899999999999999888 4334 11 122234566777
Q ss_pred cCCHHHHHHHHHHHHh--cCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccCC
Q 048117 162 HKNIDLAEEASRQLDQ--LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTP 218 (352)
Q Consensus 162 ~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 218 (352)
+++-+.|.+.+..... ........++.++..|.+...++.|......+..+...+|+
T Consensus 293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~ 351 (895)
T KOG2076|consen 293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDD 351 (895)
T ss_pred hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCCh
Confidence 8888888888887765 33344557788999999999999999998888774444443
No 91
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.05 E-value=0.00031 Score=63.70 Aligned_cols=122 Identities=14% Similarity=0.076 Sum_probs=101.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHh
Q 048117 84 FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRV 161 (352)
Q Consensus 84 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~ 161 (352)
..+++..+...++++.|..+++++.+. .|+ ....|+..|...++-.+|.+++++. ...| +......-..-|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 456777888889999999999999854 355 4556788888889999999999887 3334 44455555566889
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHH
Q 048117 162 HKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 162 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
.++.+.|..+.+++.+..|.+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999998875
No 92
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.04 E-value=0.0031 Score=59.25 Aligned_cols=194 Identities=13% Similarity=0.029 Sum_probs=152.9
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 90 (352)
....|--...-+-..||+..|+.++...-+- +...|-+-+..-..+.+++.|..+|.+... ..|+...|.--+..
T Consensus 583 ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~ 660 (913)
T KOG0495|consen 583 AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANL 660 (913)
T ss_pred chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHH
Confidence 3444555555566678999998888876542 567888888888999999999999998876 45777776666666
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcc-hHHHHHHHHHhcCCHHH
Q 048117 91 CGHMGWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGV-VWGALLGGCRVHKNIDL 167 (352)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~li~~~~~~g~~~~ 167 (352)
---.+..++|.+++++..+. -|+ ...|-.+-..+-+.++++.|.+.+..- ..-|+.. .|-.|...--+.|++-+
T Consensus 661 er~ld~~eeA~rllEe~lk~---fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~r 737 (913)
T KOG0495|consen 661 ERYLDNVEEALRLLEEALKS---FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVR 737 (913)
T ss_pred HHHhhhHHHHHHHHHHHHHh---CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhh
Confidence 66678899999999888853 344 456777788888999999998888765 4456544 57777777778889999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 168 AEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
|..++++..-..|.+...|...|.+-.+.|..+.|..+..+..+.
T Consensus 738 AR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 738 ARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999899999999999999999999999999887766543
No 93
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.03 E-value=1.1e-05 Score=45.60 Aligned_cols=33 Identities=21% Similarity=0.115 Sum_probs=28.3
Q ss_pred chHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Q 048117 184 GYHVVLSNIYAEAERWEDVARVRKLMRNLGVKK 216 (352)
Q Consensus 184 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 216 (352)
.+|+.++.+|++.|+++.|.++|+.|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888889999999999999998888876
No 94
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.02 E-value=0.0013 Score=59.64 Aligned_cols=201 Identities=15% Similarity=0.023 Sum_probs=143.7
Q ss_pred HHHHhCCCCCH--hHHHHHHHHHHHcC--------------CHHHHHHHHHhccc------CCHHHHHHHHHHHHHcCCH
Q 048117 5 YSNQSGFRRNI--RVCNTLIDMYVKCG--------------CLEGARRVFIEMEE------RTVFTWSAMIQGLAIHGQA 62 (352)
Q Consensus 5 ~~~~~g~~~~~--~~~~~li~~~~~~g--------------~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~ 62 (352)
.+.++|..|.. .++..|-+.+...+ ++.+++..-+.|+. ++...+...+.+.......
T Consensus 211 ~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~ 290 (484)
T COG4783 211 TLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPN 290 (484)
T ss_pred HHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccc
Confidence 45677777763 44555555442222 35566666677764 3566777777776655444
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 048117 63 KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRN 142 (352)
Q Consensus 63 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 142 (352)
..+..++-+-.+. .-...-|...+ .+-..|.++.|+..+..+.+ ..+-|..-.....+.+.+.++..+|.+.+++
T Consensus 291 ~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~k 365 (484)
T COG4783 291 QQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKK 365 (484)
T ss_pred cchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4444433332221 11233354444 44577999999999999884 3444556666777899999999999999999
Q ss_pred C-CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHH
Q 048117 143 M-PIKPN-GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 143 m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
+ ...|+ ...+-.+-.++.+.|++.+|...++......|.++..|..|..+|...|+..++..-..+.-
T Consensus 366 al~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 366 ALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 8 55676 56677788899999999999999999999999999999999999999999999988877664
No 95
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.99 E-value=0.0047 Score=56.16 Aligned_cols=179 Identities=15% Similarity=0.014 Sum_probs=124.7
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhccc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHH
Q 048117 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEE-RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN-GVTFIGLLHA 90 (352)
Q Consensus 13 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 90 (352)
|+...+...+........-..+..++..-.+ .....+-..--.+...|+.++|+..++++... .|| ..-.....+.
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i 349 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDI 349 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 4555555555544333322222222222222 22222333333445689999999999998775 455 4455566788
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCCHHH
Q 048117 91 CGHMGWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGFLQEAYEFIRNM--PIKPNGVVWGALLGGCRVHKNIDL 167 (352)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~ 167 (352)
+.+.++..+|.+.++.+. ...|+ ....-.+.++|.+.|++.+|...++.. ...-|+..|..|-.+|...|+..+
T Consensus 350 ~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 350 LLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred HHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHH
Confidence 899999999999999988 34666 566778889999999999999999988 333478899999999999999887
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 168 AEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
+..... ..|...|+++.|...+....+..
T Consensus 427 a~~A~A-----------------E~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 427 ALLARA-----------------EGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHH-----------------HHHHhCCCHHHHHHHHHHHHHhc
Confidence 765543 45677889999988888777654
No 96
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.96 E-value=6.2e-06 Score=45.60 Aligned_cols=30 Identities=47% Similarity=0.552 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhcccCC
Q 048117 16 RVCNTLIDMYVKCGCLEGARRVFIEMEERT 45 (352)
Q Consensus 16 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~ 45 (352)
++||+||++|++.|++++|.++|++|.+.+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 589999999999999999999999998754
No 97
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.95 E-value=0.00043 Score=53.80 Aligned_cols=96 Identities=11% Similarity=-0.001 Sum_probs=82.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 048117 117 IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYA 194 (352)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (352)
....-++..-+...|++++|.++|+-+ .+.| +..-|-.|-.+|-..|++++|...|.....+.|+++.++..+-.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344556666678999999999999998 4455 55568888888999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhc
Q 048117 195 EAERWEDVARVRKLMRNL 212 (352)
Q Consensus 195 ~~g~~~~a~~~~~~m~~~ 212 (352)
..|+.+.|++-|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999987654
No 98
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.0028 Score=53.16 Aligned_cols=148 Identities=11% Similarity=-0.007 Sum_probs=82.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHH----
Q 048117 53 IQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS---- 128 (352)
Q Consensus 53 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~---- 128 (352)
...|...|++++|++..... -..+.. ..=+..+.+..+++-|.+.++.|.+ + .+..|.+-|..++.
T Consensus 115 a~i~~~~~~~deAl~~~~~~----~~lE~~--Al~VqI~lk~~r~d~A~~~lk~mq~---i-ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLG----ENLEAA--ALNVQILLKMHRFDLAEKELKKMQQ---I-DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhcc----chHHHH--HHHHHHHHHHHHHHHHHHHHHHHHc---c-chHHHHHHHHHHHHHHhc
Confidence 33456667777777766651 111222 1223344456667777777777763 1 12334443433333
Q ss_pred hcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHH-HHHHH
Q 048117 129 RAGFLQEAYEFIRNM--PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWE-DVARV 205 (352)
Q Consensus 129 ~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~ 205 (352)
-.+.+.+|.-+|++| ...|++.+.+-...++...|++++|+.++++.....+.++.+...++-.-.-.|... ...+.
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 344677777777777 245666677777777777777777777777777666666655554444444444443 23334
Q ss_pred HHHHH
Q 048117 206 RKLMR 210 (352)
Q Consensus 206 ~~~m~ 210 (352)
...++
T Consensus 265 l~QLk 269 (299)
T KOG3081|consen 265 LSQLK 269 (299)
T ss_pred HHHHH
Confidence 44443
No 99
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.94 E-value=0.002 Score=65.21 Aligned_cols=192 Identities=10% Similarity=0.078 Sum_probs=149.7
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhcccC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEER-T-VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACG 92 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 92 (352)
..+|.++++.---.|.-+...++|++..+- | ...|..|...|.+.++.++|.++|++|.+. ..-....|...+..+.
T Consensus 1497 LNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl 1575 (1710)
T KOG1070|consen 1497 LNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLL 1575 (1710)
T ss_pred HHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHh
Confidence 357889999888889889999999998864 4 467899999999999999999999999765 4456678999999999
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHH
Q 048117 93 HMGWVDEGRRFFYSMTTEYGIIP--QIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLA 168 (352)
Q Consensus 93 ~~g~~~~a~~~~~~m~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a 168 (352)
+..+-+.|..++.+..+ .++- ......-.+..-.+.|+.+.+..+|+.. .--| -...|+..|..-.++|+.+.+
T Consensus 1576 ~~ne~~aa~~lL~rAL~--~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~v 1653 (1710)
T KOG1070|consen 1576 RQNEAEAARELLKRALK--SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYV 1653 (1710)
T ss_pred cccHHHHHHHHHHHHHh--hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHH
Confidence 99999999999998874 3332 3455666777778999999999999988 2122 356899999999999999999
Q ss_pred HHHHHHHHhcC--CCCc-chHHHHHHHHHHccCHHHHHHHHHHH
Q 048117 169 EEASRQLDQLD--PLNN-GYHVVLSNIYAEAERWEDVARVRKLM 209 (352)
Q Consensus 169 ~~~~~~~~~~~--~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m 209 (352)
+.+|+++..+. |... ..|.-.+..=.+.|+-..++.+=.+.
T Consensus 1654 R~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1654 RDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred HHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 99999998743 3222 23445555555667776666554433
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.93 E-value=0.0052 Score=55.63 Aligned_cols=195 Identities=10% Similarity=-0.003 Sum_probs=101.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CccH--HHHHHHHHHH
Q 048117 18 CNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGI-KPNG--VTFIGLLHAC 91 (352)
Q Consensus 18 ~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~ 91 (352)
...+...+...|++++|...++...+. +...+..+...+...|++++|...+++.....- .|+. ..|..+...+
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 334455666777777777777766542 456667777777777777777777777654321 1222 2344566667
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChhhH-H--HHHHHHHhcCCHHHHHHH---HHhC-CCCC-CcchHH--HHHHHHHh
Q 048117 92 GHMGWVDEGRRFFYSMTTEYGIIPQIEHY-G--CMVDLLSRAGFLQEAYEF---IRNM-PIKP-NGVVWG--ALLGGCRV 161 (352)
Q Consensus 92 ~~~g~~~~a~~~~~~m~~~~g~~~~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m-~~~p-~~~~~~--~li~~~~~ 161 (352)
...|+.++|..+++.........+..... + .++.-+...|..+.+.++ ...- +..| ....+. ....++..
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 77777777777777664211111111111 1 222223333433222222 1111 1001 111122 34455667
Q ss_pred cCCHHHHHHHHHHHHhcC-C---CC-----cchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 162 HKNIDLAEEASRQLDQLD-P---LN-----NGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 162 ~g~~~~a~~~~~~~~~~~-~---~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
.|+.+.|..+++.+.... . .. ........-.+...|++++|.+.+......
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777765411 1 00 111122333445777788887777766554
No 101
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.92 E-value=0.0021 Score=62.89 Aligned_cols=196 Identities=10% Similarity=0.034 Sum_probs=146.4
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHH--H
Q 048117 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERT------VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGV--T 83 (352)
Q Consensus 12 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t 83 (352)
..|+++.|.|.+.|.--|+.+.+..+...+...+ ..+|--+.++|-..|++++|...|.+-.+. .||.. .
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~ 344 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLP 344 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCcccc
Confidence 3578889999999999999999999888877543 245777899999999999999999887653 45553 4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcC----CHHHHHHHHHhC--CCCCCcchHHHHHH
Q 048117 84 FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG----FLQEAYEFIRNM--PIKPNGVVWGALLG 157 (352)
Q Consensus 84 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m--~~~p~~~~~~~li~ 157 (352)
+..|.+.+.+.|+++.+...|+.+.. -.+-+..+...|...|+..+ ..+.|..++.+. ....|...|-.+-.
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k--~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laq 422 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLK--QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQ 422 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHH--hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 55788889999999999999998884 33344677777777787775 566777777766 22236667766655
Q ss_pred HHHhcCCHHHHHHHHHHHHh-----cCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 158 GCRVHKNIDLAEEASRQLDQ-----LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
.+- .++...+..++..+.. ..+.++...+.+.......|++++|...|+.....
T Consensus 423 l~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 423 LLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 554 4455555776665542 34455677788888889999999999999988765
No 102
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.91 E-value=0.00048 Score=68.26 Aligned_cols=216 Identities=12% Similarity=0.101 Sum_probs=138.1
Q ss_pred hCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhccc--CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc----
Q 048117 9 SGFRR-NIRVCNTLIDMYVKCGCLEGARRVFIEMEE--RT-VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN---- 80 (352)
Q Consensus 9 ~g~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---- 80 (352)
.++.| +...+-.|++.|-..+++++|.++.+.-.+ |+ ...|-.+...+.+.++.+++..+ .+... +..+
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~ 100 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWA 100 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchh
Confidence 44554 567899999999999999999999986554 32 22233333356666666666555 33221 1222
Q ss_pred ---------------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 048117 81 ---------------GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPI 145 (352)
Q Consensus 81 ---------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 145 (352)
...+..+..+|-+.|+.+++.++++++.+ .. +-|+.+.|.+...|+.. ++++|.+++.+.
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~-~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-- 175 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK-AD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-- 175 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh-cC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH--
Confidence 24566778888888999999999999994 34 45688899999999999 999999988765
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--------------------chHHHHHHHHHHccCHHHHHHH
Q 048117 146 KPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN--------------------GYHVVLSNIYAEAERWEDVARV 205 (352)
Q Consensus 146 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~g~~~~a~~~ 205 (352)
+.-+...+++..+..+|.++....|++. .++..|-..|-+..+|+++..+
T Consensus 176 ----------V~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 176 ----------IYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred ----------HHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 1113333344444444444444433322 2334466778888899999999
Q ss_pred HHHHHhcCCccCCceeEEEECCEEEEEEeCCCCchhHHHHHH
Q 048117 206 RKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQ 247 (352)
Q Consensus 206 ~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
++.+.+..-.- .+. ...++..|..-|..|+..++.++
T Consensus 246 LK~iL~~~~~n----~~a-~~~l~~~y~~kY~~~~~~ee~l~ 282 (906)
T PRK14720 246 LKKILEHDNKN----NKA-REELIRFYKEKYKDHSLLEDYLK 282 (906)
T ss_pred HHHHHhcCCcc----hhh-HHHHHHHHHHHccCcchHHHHHH
Confidence 99988754331 111 22333444444555555554443
No 103
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.00076 Score=57.38 Aligned_cols=204 Identities=9% Similarity=-0.005 Sum_probs=148.3
Q ss_pred hCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 048117 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFI 85 (352)
Q Consensus 9 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 85 (352)
+|+.....-+++.+..+.+..++++|.+++..-.++ +....+.+..+|....++..|.+.|+++-.. .|...-|.
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYr 81 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYR 81 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHH
Confidence 444444455677777788889999999998866654 5677888999999999999999999999763 56655543
Q ss_pred H-HHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHH--HHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 048117 86 G-LLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMV--DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162 (352)
Q Consensus 86 ~-ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~ 162 (352)
. -.+.+-+.+.+.+|.++...|.. . |+...-..-+ ......+++..+..++++.+-+-+..+.+..--...+.
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D--~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLD--N--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcC--C--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeecc
Confidence 2 24556678889999999887763 1 2221111111 12345788889999999986444555555555556789
Q ss_pred CCHHHHHHHHHHHHh-cCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccCCc
Q 048117 163 KNIDLAEEASRQLDQ-LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPG 219 (352)
Q Consensus 163 g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 219 (352)
|+.+.|.+-|+...+ .+..+...|+..+..| +.|+.+.|.+...++.++|++..|.
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPE 214 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCc
Confidence 999999999999988 4444455666555555 6799999999999999999986653
No 104
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.91 E-value=0.00025 Score=54.48 Aligned_cols=95 Identities=19% Similarity=0.206 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 048117 118 EHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAE 195 (352)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 195 (352)
.....+...+.+.|+.++|.+.|+.. ...| +...|..+...+...|+.+.|...++...+..|.+...+..+...|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 33444555555666666666666555 2223 344555555556666666666666666655556555555555566666
Q ss_pred ccCHHHHHHHHHHHHhc
Q 048117 196 AERWEDVARVRKLMRNL 212 (352)
Q Consensus 196 ~g~~~~a~~~~~~m~~~ 212 (352)
.|++++|.+.|+...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666655543
No 105
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.87 E-value=0.0007 Score=51.98 Aligned_cols=113 Identities=10% Similarity=-0.019 Sum_probs=75.2
Q ss_pred HHHHHHHcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 048117 68 SFNKMIEIGIKPNG-VTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PI 145 (352)
Q Consensus 68 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 145 (352)
+|++... ..|+. .....+...+...|+.++|.+.++..... -+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444443 33433 34555666777778888888887777632 2335667777777777888888888777776 33
Q ss_pred CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 048117 146 KP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNG 184 (352)
Q Consensus 146 ~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 184 (352)
.| +...|..+-..+...|+.++|...++...+..|.+..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 34 4556666777778888888888888887777776543
No 106
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.87 E-value=0.00026 Score=51.28 Aligned_cols=81 Identities=12% Similarity=0.103 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CccHHHHHHHHHHHhccC--------CHHHHHHHHHHhHHhcCCCCChh
Q 048117 48 TWSAMIQGLAIHGQAKEALTSFNKMIEIGI-KPNGVTFIGLLHACGHMG--------WVDEGRRFFYSMTTEYGIIPQIE 118 (352)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~g~~~~~~ 118 (352)
|-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|.. .+++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHH
Confidence 334567777778999999999999999999 999999999999887653 24466778888985 48999999
Q ss_pred hHHHHHHHHHh
Q 048117 119 HYGCMVDLLSR 129 (352)
Q Consensus 119 ~~~~li~~~~~ 129 (352)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999987765
No 107
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.86 E-value=0.00073 Score=52.75 Aligned_cols=123 Identities=15% Similarity=0.120 Sum_probs=57.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hhhHHHH
Q 048117 49 WSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN---GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ--IEHYGCM 123 (352)
Q Consensus 49 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~--~~~~~~l 123 (352)
|..++..+ ..++...+...++++.... +.+ ....-.+...+...|++++|...|+..... ...|+ ....-.|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 33344444 2555555555555555431 111 112222334555556666666666655532 21111 1223334
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC-CCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 048117 124 VDLLSRAGFLQEAYEFIRNMPIK-PNGVVWGALLGGCRVHKNIDLAEEASRQ 174 (352)
Q Consensus 124 i~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~ 174 (352)
...+...|++++|+..++..+.. .....+...-..+.+.|+.++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45555566666666666554211 1223344444556666666666665554
No 108
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.85 E-value=0.00026 Score=49.73 Aligned_cols=92 Identities=17% Similarity=0.158 Sum_probs=63.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcc
Q 048117 120 YGCMVDLLSRAGFLQEAYEFIRNM-PIKPN-GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAE 197 (352)
Q Consensus 120 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 197 (352)
+..+...+...|++++|..++++. ...|+ ...+..+...+...++++.|...++......|.+...+..+...+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445566667777777777777776 33332 3556666777777777888888887777766666566667777777788
Q ss_pred CHHHHHHHHHHHHh
Q 048117 198 RWEDVARVRKLMRN 211 (352)
Q Consensus 198 ~~~~a~~~~~~m~~ 211 (352)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888877776654
No 109
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.84 E-value=0.0012 Score=64.53 Aligned_cols=143 Identities=9% Similarity=0.046 Sum_probs=110.7
Q ss_pred CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHH-HHHH
Q 048117 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE--R-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGV-TFIG 86 (352)
Q Consensus 11 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ 86 (352)
+..++..+-.|.....+.|..++|+.+++...+ | +...+..+..++.+.+++++|+..+++.... .|+.. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 455677888888888889999999999988774 4 5677888888999999999999999998874 46544 5666
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHH
Q 048117 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM--PIKPNGVVWGALLG 157 (352)
Q Consensus 87 ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~ 157 (352)
+-.++.+.|+.++|..+|++... ..+-+..++..+...+-+.|+.++|...|++. ...|....|+..+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 77788889999999999998884 22334678888888888999999999988887 23355556665553
No 110
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.84 E-value=0.00066 Score=66.17 Aligned_cols=182 Identities=13% Similarity=0.059 Sum_probs=137.3
Q ss_pred CCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCccHHHHHHHHHHHhcc----------
Q 048117 29 GCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEI-GIKPNGVTFIGLLHACGHM---------- 94 (352)
Q Consensus 29 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~---------- 94 (352)
+...+|...+..... .|+..|+-+.+.+.....+..|-+-|....+. ...+|..+..+|-+.|.+.
T Consensus 544 ~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek 623 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEK 623 (1018)
T ss_pred cCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHH
Confidence 345566666665543 46778888888888888888888877766532 2346777777777755432
Q ss_pred --CCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCcchHHHHHHHHHhcCCHHHHHH
Q 048117 95 --GWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP--IKPNGVVWGALLGGCRVHKNIDLAEE 170 (352)
Q Consensus 95 --g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~li~~~~~~g~~~~a~~ 170 (352)
+..+.|+++|....+ .-+-|...-|-+...++.+|++++|..+|.+.. ......+|-.+..+|...|++-.|.+
T Consensus 624 ~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHH
Confidence 456889999988874 445567777888888999999999999999982 22355689999999999999999999
Q ss_pred HHHHHHh-cCC-CCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 171 ASRQLDQ-LDP-LNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 171 ~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
+|+...+ ..+ ++......|..++-++|.+.+|.+........
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 9999766 333 44556678999999999999999887766554
No 111
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.83 E-value=0.00028 Score=64.36 Aligned_cols=120 Identities=12% Similarity=0.060 Sum_probs=92.7
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhccc-C-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHH
Q 048117 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE-R-----TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVT 83 (352)
Q Consensus 10 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 83 (352)
+.+.+......+++.....-+++.+..++-..+. | -..|..++|+.|.+.|..++++.+++.=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3445666667777777777778888877776663 2 224556899999999999999999998888999999999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhc
Q 048117 84 FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130 (352)
Q Consensus 84 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~ 130 (352)
|+.||+.+.+.|++..|.++...|... +...+..|+..-+.++.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 999999999999999999988888754 6566667777666666666
No 112
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.81 E-value=0.00031 Score=57.19 Aligned_cols=98 Identities=14% Similarity=0.242 Sum_probs=70.0
Q ss_pred HHHHHHhc--ccCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccC-----------
Q 048117 34 ARRVFIEM--EERTVFTWSAMIQGLAIH-----GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMG----------- 95 (352)
Q Consensus 34 A~~~f~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 95 (352)
-...|+.. ..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||+.+=+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 45666666 567888888888888764 667777777888888888888888888888775432
Q ss_pred -----CHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCC
Q 048117 96 -----WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132 (352)
Q Consensus 96 -----~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~ 132 (352)
+-+-|++++++|. .+|+.||..++..|++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 2355666777776 35777777777777777666553
No 113
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.80 E-value=0.00017 Score=65.82 Aligned_cols=122 Identities=11% Similarity=0.026 Sum_probs=69.4
Q ss_pred cCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCcc
Q 048117 75 IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY-GIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM---PIKPNGV 150 (352)
Q Consensus 75 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~ 150 (352)
.+.+.+.+....+++.+....+++++..++....... ....-..|..++|..|.+.|..++++.+++.= |+=||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 3445566666666666666666666666666555321 11122234456666666777666666666553 6666677
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCcchHHHHHHHHHHc
Q 048117 151 VWGALLGGCRVHKNIDLAEEASRQLDQ-LDPLNNGYHVVLSNIYAEA 196 (352)
Q Consensus 151 ~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 196 (352)
|+|.||..+.+.|++..|.++...|.. -...++.++..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777666666665543 3333444444333333333
No 114
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.79 E-value=0.0019 Score=58.42 Aligned_cols=182 Identities=13% Similarity=0.144 Sum_probs=137.0
Q ss_pred HcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHH
Q 048117 27 KCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF 103 (352)
Q Consensus 27 ~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 103 (352)
..+++..|+.+|+.... +++..|---+..=.++..+..|..+|++....=-..|.. +--.+..=-..|++..|.++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHH
Confidence 45677789999997764 567778878888888999999999999987642222332 22222233456899999999
Q ss_pred HHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048117 104 FYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182 (352)
Q Consensus 104 ~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 182 (352)
|+.-. ...|+...|.+.|+.=.+-..++.|..+++.. -+.|++.+|--...---++|++..+..++......-.++
T Consensus 164 ferW~---~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 164 FERWM---EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHH---cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 99877 67899999999999999999999999999998 567999999888888899999999999999887632222
Q ss_pred ---cchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 183 ---NGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 183 ---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
...+++....=.++..++.|.-+|+-..++
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 233444444445677777887777766543
No 115
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.78 E-value=0.00061 Score=63.64 Aligned_cols=169 Identities=20% Similarity=0.251 Sum_probs=87.5
Q ss_pred hHHHHhCCC--CC--HhHHHHHHHHHHHcCCHHHHHHHHHhcccC--CHHHHHHHHHHHHH----------------cCC
Q 048117 4 EYSNQSGFR--RN--IRVCNTLIDMYVKCGCLEGARRVFIEMEER--TVFTWSAMIQGLAI----------------HGQ 61 (352)
Q Consensus 4 ~~~~~~g~~--~~--~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~----------------~g~ 61 (352)
+.+.+.|+. +| ...|++|.+-|.+.|.+++|+.+|++.... .+.-|+.+-++|++ .|+
T Consensus 233 daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n 312 (835)
T KOG2047|consen 233 DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGN 312 (835)
T ss_pred HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 345566654 44 478999999999999999999999976543 22223333333332 111
Q ss_pred ------HHHHHHHHHHHHHcC-C---------Cc-cHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC------hh
Q 048117 62 ------AKEALTSFNKMIEIG-I---------KP-NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ------IE 118 (352)
Q Consensus 62 ------~~~A~~l~~~m~~~g-~---------~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~------~~ 118 (352)
++-.+.-|+.+...+ + .| +..++..-+. ...|+..+-...+.+.++ .+.|. ..
T Consensus 313 ~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~--~vdP~ka~Gs~~~ 388 (835)
T KOG2047|consen 313 EEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVK--TVDPKKAVGSPGT 388 (835)
T ss_pred hhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHH--ccCcccCCCChhh
Confidence 122222233322211 0 01 1112222111 123555666666666663 34432 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCCCC--C----cchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048117 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKP--N----GVVWGALLGGCRVHKNIDLAEEASRQLD 176 (352)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~~~~~m~~~p--~----~~~~~~li~~~~~~g~~~~a~~~~~~~~ 176 (352)
.|..+...|-..|+++.|..+|++...-| . ..+|..-...-.++.+++.|.++.+...
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 46666667777777777777777762111 1 2234444444455566666666655543
No 116
>PLN02789 farnesyltranstransferase
Probab=97.77 E-value=0.0088 Score=53.16 Aligned_cols=193 Identities=11% Similarity=0.026 Sum_probs=135.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 048117 16 RVCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHG-QAKEALTSFNKMIEIGIKPNGVTFIGLLHAC 91 (352)
Q Consensus 16 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 91 (352)
.+++.+-..+.+.++.++|..+.+++.+. +..+|+.--..+...| .+++++..++++.+..- -+..+|+.---.+
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l 116 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHH
Confidence 34555666677788999999999988764 4456776666666777 57999999999987532 2344565544444
Q ss_pred hccCC--HHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhc---CC
Q 048117 92 GHMGW--VDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVH---KN 164 (352)
Q Consensus 92 ~~~g~--~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~---g~ 164 (352)
.+.|. .+++..+.+.+.. .-+-|..+|+-..-.+.+.|++++|++.++++ ...| |...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccc
Confidence 55555 3667888877773 22345788888888888999999999999998 3333 666787766555544 22
Q ss_pred ----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHc----cCHHHHHHHHHHHHh
Q 048117 165 ----IDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA----ERWEDVARVRKLMRN 211 (352)
Q Consensus 165 ----~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~ 211 (352)
.+....+...+....|.+...+..+...+... ++..+|.+.+.+..+
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 24567777777888999999998887777662 344567777666544
No 117
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.76 E-value=0.00087 Score=49.95 Aligned_cols=99 Identities=10% Similarity=-0.048 Sum_probs=48.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----cchHHHHHHH
Q 048117 85 IGLLHACGHMGWVDEGRRFFYSMTTEYGIIP-QIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPN----GVVWGALLGG 158 (352)
Q Consensus 85 ~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~ 158 (352)
..+...+.+.|++++|.+.+..+.....-.+ ....+..+...+.+.|+++.|.+.|+.. ...|+ ..++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344444555555555555555553211101 1223444555555556666665555554 21222 2334445555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCc
Q 048117 159 CRVHKNIDLAEEASRQLDQLDPLNN 183 (352)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~~~~~ 183 (352)
+.+.|+.++|...++.+....|++.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCCh
Confidence 5556666666666666555555443
No 118
>PLN02789 farnesyltranstransferase
Probab=97.74 E-value=0.013 Score=51.99 Aligned_cols=193 Identities=12% Similarity=0.045 Sum_probs=137.1
Q ss_pred HhHHHHHHHHHHHcC-CHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCccHHHHHHHH
Q 048117 15 IRVCNTLIDMYVKCG-CLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQA--KEALTSFNKMIEIGIKPNGVTFIGLL 88 (352)
Q Consensus 15 ~~~~~~li~~~~~~g-~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~t~~~ll 88 (352)
..+|+---..+.+.| +++++...++.+.+ ++..+|+.---.+.+.|.. ++++++++++.+.. +-|..+|+...
T Consensus 71 ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~ 149 (320)
T PLN02789 71 YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQ 149 (320)
T ss_pred HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 345555555566667 67999999998774 3566788766566666653 67899999998753 23677888888
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhc---CCH----HHHHHHHHhC-CCCC-CcchHHHHHHHH
Q 048117 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA---GFL----QEAYEFIRNM-PIKP-NGVVWGALLGGC 159 (352)
Q Consensus 89 ~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~---g~~----~~A~~~~~~m-~~~p-~~~~~~~li~~~ 159 (352)
-++.+.|+++++.+.++.+.+. + .-|...|+.....+.+. |.. +++++...+. ...| |...|+-+-..+
T Consensus 150 w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll 227 (320)
T PLN02789 150 WVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLF 227 (320)
T ss_pred HHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 8888999999999999999853 3 33566777766665554 222 4566666444 5556 667798888888
Q ss_pred Hhc----CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcc------------------CHHHHHHHHHHHH
Q 048117 160 RVH----KNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAE------------------RWEDVARVRKLMR 210 (352)
Q Consensus 160 ~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 210 (352)
... +...++..++.+..+..|........|++.|+... ..++|.++++.+.
T Consensus 228 ~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 228 KDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 773 34466888888877777777777778999998632 2367888888884
No 119
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.00096 Score=56.79 Aligned_cols=177 Identities=17% Similarity=0.122 Sum_probs=123.5
Q ss_pred cCCHHHHHHHHHhccc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCccHHHHHHHHHHHhccCCHHHHHHHHH
Q 048117 28 CGCLEGARRVFIEMEE-RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFY 105 (352)
Q Consensus 28 ~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 105 (352)
.+|+..++.+.++.+. .+..+-+.......+.|++++|++-|+...+- |.. ....|+..+ +.-+.|+.+.|.++..
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iS 202 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHIS 202 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHH
Confidence 4555556666666652 45555555555667899999999999998754 554 456676555 4556789999999998
Q ss_pred HhHHhcCCC-------------CCh--------hhHHHHHH-------HHHhcCCHHHHHHHHHhCC----CCCCcchHH
Q 048117 106 SMTTEYGII-------------PQI--------EHYGCMVD-------LLSRAGFLQEAYEFIRNMP----IKPNGVVWG 153 (352)
Q Consensus 106 ~m~~~~g~~-------------~~~--------~~~~~li~-------~~~~~g~~~~A~~~~~~m~----~~p~~~~~~ 153 (352)
+++.+ |+. ||+ -+-++++. .+.+.|+.+.|.+.+..|| -+.|++|..
T Consensus 203 EIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLH 281 (459)
T KOG4340|consen 203 EIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLH 281 (459)
T ss_pred HHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhh
Confidence 88854 543 121 12233433 4567899999999999994 235778876
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHH
Q 048117 154 ALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKL 208 (352)
Q Consensus 154 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (352)
.+.-. -..+++..+.+-+.-+.+..|-+..++..++-.|++..-++-|-.++.+
T Consensus 282 N~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 282 NQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 65433 3355666666666777777887788998888999999999999888764
No 120
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.0045 Score=56.27 Aligned_cols=153 Identities=12% Similarity=0.112 Sum_probs=126.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhhHHHHHHHHHhcCCHH
Q 048117 56 LAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP-QIEHYGCMVDLLSRAGFLQ 134 (352)
Q Consensus 56 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~ 134 (352)
+.-.|+...|...|+..+...-.++.. |.-+-..|....+.++..+.|.... .+.| ++.+|..-..++.-.++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~---~ldp~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAE---DLDPENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHH---hcCCCCCchhHhHHHHHHHHHHHH
Confidence 445788999999999998765444442 6667778999999999999998776 3333 5778888888888899999
Q ss_pred HHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 135 EAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 135 ~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
+|..=|++. .+.| +...|-.+--+..+.+.+++++..|++.++.-|..+..|+.....+...+++++|.+-|+...+.
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 999999998 6666 45567666666677889999999999999999999999999999999999999999999987654
No 121
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.67 E-value=0.00096 Score=46.67 Aligned_cols=90 Identities=18% Similarity=0.101 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHh
Q 048117 50 SAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129 (352)
Q Consensus 50 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~ 129 (352)
..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++.... -.+.+..++..+...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHH
Confidence 334444445555555555555554321 11223344444444455555555555544442 112222344444444555
Q ss_pred cCCHHHHHHHHHh
Q 048117 130 AGFLQEAYEFIRN 142 (352)
Q Consensus 130 ~g~~~~A~~~~~~ 142 (352)
.|+.++|...+.+
T Consensus 81 ~~~~~~a~~~~~~ 93 (100)
T cd00189 81 LGKYEEALEAYEK 93 (100)
T ss_pred HHhHHHHHHHHHH
Confidence 5555555544443
No 122
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.65 E-value=0.0028 Score=49.45 Aligned_cols=124 Identities=13% Similarity=0.081 Sum_probs=88.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc----chHHHHH
Q 048117 83 TFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP-QIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNG----VVWGALL 156 (352)
Q Consensus 83 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~li 156 (352)
.|..++.++ ..++...+...++.+..+++-.| .....-.+...+...|++++|...|+.. ...||. ...-.+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 444555555 47888999999999986532221 1233334557888999999999999998 222333 2444567
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHH
Q 048117 157 GGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKL 208 (352)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (352)
..+...|++++|...++.... .+..+......-+.|.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 788999999999999976432 223344666788999999999999999875
No 123
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.64 E-value=0.0005 Score=60.05 Aligned_cols=131 Identities=10% Similarity=0.113 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHH
Q 048117 48 TWSAMIQGLAIHGQAKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126 (352)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~ 126 (352)
+|-.+|+..-+.+..+.|..+|.+.++.+ +..+.....+.+. +...++.+.|..+|+...+. +..+...|..-++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 45555555555555555555555554321 1222222222221 22234444455555555543 23334445555555
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 048117 127 LSRAGFLQEAYEFIRNM-PIKPN----GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181 (352)
Q Consensus 127 ~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 181 (352)
+.+.|+.+.|..+|++. ..-|. ...|...+.--.+.|+++....+.+++.+.-|.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 55566666666666555 11122 225666666666666666666666665554443
No 124
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.013 Score=52.32 Aligned_cols=194 Identities=13% Similarity=0.049 Sum_probs=108.3
Q ss_pred hCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHH---HHHHHHcC-------------------------
Q 048117 9 SGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAM---IQGLAIHG------------------------- 60 (352)
Q Consensus 9 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g------------------------- 60 (352)
.-++-|+....++-+.|...|+...|...|++...-|+.+..+| .-.+.+.|
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV 305 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV 305 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence 34667889999999999999999999999997664333222211 11112233
Q ss_pred ---------CHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhhHHHHHHHHHh
Q 048117 61 ---------QAKEALTSFNKMIEIGIKPN-GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP-QIEHYGCMVDLLSR 129 (352)
Q Consensus 61 ---------~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~ 129 (352)
+++.|+.+-.+-.+ +.|+ ...|..=-.++.+.|++++|.-.|+..+ .+.| +...|.-|+..|..
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~--~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq---~Lap~rL~~Y~GL~hsYLA 380 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCID--SEPRNHEALILKGRLLIALERHTQAVIAFRTAQ---MLAPYRLEIYRGLFHSYLA 380 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhc--cCcccchHHHhccHHHHhccchHHHHHHHHHHH---hcchhhHHHHHHHHHHHHh
Confidence 34444444333332 1222 2233323345567788888888887766 4444 57889999999998
Q ss_pred cCCHHHHHHHH----HhCCCCCCcchHHHHH-HHHHh-cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHH
Q 048117 130 AGFLQEAYEFI----RNMPIKPNGVVWGALL-GGCRV-HKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVA 203 (352)
Q Consensus 130 ~g~~~~A~~~~----~~m~~~p~~~~~~~li-~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 203 (352)
.|++.+|.-+- +.|+ .+..+.+.+- ..|.- ..--++|..+++...+..|.-....+.+...+..-|..+++.
T Consensus 381 ~~~~kEA~~~An~~~~~~~--~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 381 QKRFKEANALANWTIRLFQ--NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred hchHHHHHHHHHHHHHHhh--cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHH
Confidence 88888875443 3333 1222222220 11111 111245555555555555544444445555555556655555
Q ss_pred HHHHHH
Q 048117 204 RVRKLM 209 (352)
Q Consensus 204 ~~~~~m 209 (352)
.++++-
T Consensus 459 ~LLe~~ 464 (564)
T KOG1174|consen 459 KLLEKH 464 (564)
T ss_pred HHHHHH
Confidence 555543
No 125
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.62 E-value=0.0012 Score=49.10 Aligned_cols=96 Identities=15% Similarity=-0.024 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHH
Q 048117 118 EHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPN----GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN---NGYHVVL 189 (352)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l 189 (352)
.++..+...+.+.|++++|.+.|.++ ...|+ ...+..+...+.+.|+++.|...++.+....|.. ...+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45677788889999999999999998 33343 2356678889999999999999999998876654 3456677
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcC
Q 048117 190 SNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 190 ~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
..++.+.|++++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 888999999999999999998764
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.012 Score=49.52 Aligned_cols=139 Identities=12% Similarity=0.005 Sum_probs=72.9
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 048117 67 TSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIK 146 (352)
Q Consensus 67 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 146 (352)
++.+.+.......|......-...|.+.|++++|.+..+... +......=+..+.|..++|-|.+.++.|..-
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-------NLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334444444344443433344445666666666666554311 2223333334455666666666666666222
Q ss_pred CCcchHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 147 PNGVVWGALLGGCRV----HKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 147 p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
.+..|.+.|..++.+ .+.+..|.-+|+++.+.-|+++.+.+-...+....|++++|+.++++...+
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 244455544444422 234566666666666644444444444455556666677776666666544
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.011 Score=49.35 Aligned_cols=179 Identities=12% Similarity=0.063 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHhccc--------CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHH-HHHHHHhccCCHH
Q 048117 29 GCLEGARRVFIEMEE--------RTV-FTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFI-GLLHACGHMGWVD 98 (352)
Q Consensus 29 g~~~~A~~~f~~m~~--------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~ 98 (352)
.+.++..+++.++.. ++. ..|.-++-+....|+.+-|...++++... + |.+.-.. .-.--+-..|..+
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchh
Confidence 345556666665542 122 23444555555666666677777666544 2 3322111 1111223356666
Q ss_pred HHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048117 99 EGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM--PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLD 176 (352)
Q Consensus 99 ~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 176 (352)
+|.++++....+ -+.|.++|--=+.+.-..|+--+|.+-+.+. .+-.|...|.-+-..|...|+++.|.-.++++.
T Consensus 104 ~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 777777666643 2444555555454555555555555544444 223466677777777777777777777777666
Q ss_pred hcCCCCcchHHHHHHHHHHcc---CHHHHHHHHHHHHh
Q 048117 177 QLDPLNNGYHVVLSNIYAEAE---RWEDVARVRKLMRN 211 (352)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~ 211 (352)
-..|.++..+..+.+.+--.| +.+-+.+.|..-.+
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 666666655555555443322 34445555555444
No 128
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.54 E-value=0.00014 Score=50.90 Aligned_cols=76 Identities=18% Similarity=0.269 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHhC-CCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHH
Q 048117 131 GFLQEAYEFIRNM-PIKP---NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVR 206 (352)
Q Consensus 131 g~~~~A~~~~~~m-~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 206 (352)
|+++.|+.+++++ ...| +...|-.+..++.+.|+.++|..+++. .+..+.+......+..+|.+.|++++|.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4555555555555 1111 223333455555555555555555555 3333332233334455555556666655555
Q ss_pred H
Q 048117 207 K 207 (352)
Q Consensus 207 ~ 207 (352)
+
T Consensus 82 ~ 82 (84)
T PF12895_consen 82 E 82 (84)
T ss_dssp H
T ss_pred h
Confidence 4
No 129
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.52 E-value=0.0041 Score=54.36 Aligned_cols=141 Identities=12% Similarity=0.138 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHH---HH-HHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 048117 16 RVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMI---QG-LAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHAC 91 (352)
Q Consensus 16 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~-~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 91 (352)
.+|..++...-+.+.++.|+.+|....+....+|...+ .. +...++.+.|..+|+...+. +..+..-+..-++-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 57889999999999999999999998865333333222 22 22256777799999999865 556667777888888
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHH
Q 048117 92 GHMGWVDEGRRFFYSMTTEYGIIP-QIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGVVWGALLG 157 (352)
Q Consensus 92 ~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~ 157 (352)
...++.+.+..+|+.......-.. ....|...++.=.+.|+++.+.++.+++ ..-|+......++.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSD 148 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 999999999999999884322222 2358999999999999999999998887 22344333333333
No 130
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.51 E-value=0.0018 Score=61.52 Aligned_cols=165 Identities=16% Similarity=0.171 Sum_probs=104.7
Q ss_pred HHHcCCHHHHHHHHHhcccCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHH
Q 048117 25 YVKCGCLEGARRVFIEMEERTVF--TWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRR 102 (352)
Q Consensus 25 ~~~~g~~~~A~~~f~~m~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 102 (352)
-.....|.+|..+++.+..+++. -|..+..-|+..|+++.|.++|.+.- .|+-.|..|.+.|++++|.+
T Consensus 742 ai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHH
Confidence 34456677777777777766543 36667777888888888888886531 24556777888888888888
Q ss_pred HHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-
Q 048117 103 FFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL- 181 (352)
Q Consensus 103 ~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~- 181 (352)
+-.+.. |-+.....|-+-..-+-+.|++.+|.+++-.++ .|+ ..|..|-++|..+...++..+-......
T Consensus 813 la~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~-~p~-----~aiqmydk~~~~ddmirlv~k~h~d~l~d 883 (1636)
T KOG3616|consen 813 LAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDHLHD 883 (1636)
T ss_pred HHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-Cch-----HHHHHHHhhCcchHHHHHHHHhChhhhhH
Confidence 765543 555566677776667777777777777776665 344 3456666666666666555432110000
Q ss_pred -----------------------CcchHHHHHHHHHHccCHHHHHHHHH
Q 048117 182 -----------------------NNGYHVVLSNIYAEAERWEDVARVRK 207 (352)
Q Consensus 182 -----------------------~~~~~~~l~~~~~~~g~~~~a~~~~~ 207 (352)
...-+.+-+++|-..+.|++|.++-+
T Consensus 884 t~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 884 THKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHh
Confidence 01123456677777777777776644
No 131
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.016 Score=53.67 Aligned_cols=197 Identities=14% Similarity=0.095 Sum_probs=150.2
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 048117 10 GFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIG 86 (352)
Q Consensus 10 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 86 (352)
|+..|+.+.-.-.+-+...+++.+..++++..-+. ....+..=|.++.+.|+..+-+.+=.+|.+. .+-...+|-+
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 45567777777888888899999999999988765 3456666677888999988888888888765 4556778999
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcc-hHHHHHHHHHhcC
Q 048117 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGV-VWGALLGGCRVHK 163 (352)
Q Consensus 87 ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~li~~~~~~g 163 (352)
+---|--.|..++|.+.|.... .+.|. ...|-.+...|+-.|.-|.|...+... ..-|... .+--+---|.+.+
T Consensus 318 Vg~YYl~i~k~seARry~SKat---~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKAT---TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHh---hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhc
Confidence 9888888899999999997665 55665 467888888898899988887776554 1111111 1112233477889
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHH
Q 048117 164 NIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
+.+.|.++|.+.....|.++....-+.-..-..+.+.+|...|+.-.
T Consensus 395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKAL 441 (611)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence 99999999999999999888777766555567889999999998766
No 132
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.38 E-value=0.002 Score=46.73 Aligned_cols=78 Identities=19% Similarity=0.331 Sum_probs=63.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCC-CCChhhHHHHHHHHHhcC--------CHHHHHHHHHhC---CCCCCcc
Q 048117 83 TFIGLLHACGHMGWVDEGRRFFYSMTTEYGI-IPQIEHYGCMVDLLSRAG--------FLQEAYEFIRNM---PIKPNGV 150 (352)
Q Consensus 83 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m---~~~p~~~ 150 (352)
|-..-|..|...+++.....+|+.+++ .|+ .|++.+|+.++.+.++.. ++-..+.+++.| +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkR-N~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKR-NGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 344567777777999999999999995 599 999999999999888653 233567778887 7899999
Q ss_pred hHHHHHHHHHh
Q 048117 151 VWGALLGGCRV 161 (352)
Q Consensus 151 ~~~~li~~~~~ 161 (352)
+|+.++.++.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 133
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.32 E-value=0.056 Score=51.06 Aligned_cols=238 Identities=13% Similarity=0.083 Sum_probs=134.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhcc--cC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHH
Q 048117 16 RVCNTLIDMYVKCGCLEGARRVFIEME--ER-TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP-NGVTFIGLLHAC 91 (352)
Q Consensus 16 ~~~~~li~~~~~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~ 91 (352)
+-|..+--.+....++++|.+.|.... +| |...|--+--.-++.|+++...+.-.+..+. .| ....|....-+.
T Consensus 76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~ 153 (700)
T KOG1156|consen 76 VCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQ 153 (700)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHH
Confidence 334444444444455555555555432 12 3333433333334444444444444444332 23 334556666666
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHH------HHHhcCCHHHHHHHHHhCC-CCCCcch-HHHHHHHHHhcC
Q 048117 92 GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD------LLSRAGFLQEAYEFIRNMP-IKPNGVV-WGALLGGCRVHK 163 (352)
Q Consensus 92 ~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~------~~~~~g~~~~A~~~~~~m~-~~p~~~~-~~~li~~~~~~g 163 (352)
--.|+...|..+.++..+...-.|+...|.-... ...+.|.+++|++-+..-. ...|-.. -.+-...+.+.+
T Consensus 154 ~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~ 233 (700)
T KOG1156|consen 154 HLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLG 233 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHh
Confidence 7778899999999988865334577666654433 3356788888888877662 1112222 223445678899
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHH-HHHHHHHhcCCccCCceeEEEECCEEEEEEeCCCCchhH
Q 048117 164 NIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVA-RVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQA 242 (352)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (352)
++++|..++..+....|++..+|..+..++.+.-+..++. .+|....+.-..-. ... .+--.+.. +
T Consensus 234 ~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e-----~p~-Rlplsvl~----~--- 300 (700)
T KOG1156|consen 234 QLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE-----CPR-RLPLSVLN----G--- 300 (700)
T ss_pred hHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc-----cch-hccHHHhC----c---
Confidence 9999999999999999999888888888886333333333 66776655322110 000 00001111 1
Q ss_pred HHHHHHHHHHHHHHHHcCcccCCccc
Q 048117 243 EKIFQMWEKLLDGMKLKGYIPNTSVV 268 (352)
Q Consensus 243 ~~~~~~~~~l~~~m~~~g~~p~~~t~ 268 (352)
++.-..+.+.+..+.+.|++|-...+
T Consensus 301 eel~~~vdkyL~~~l~Kg~p~vf~dl 326 (700)
T KOG1156|consen 301 EELKEIVDKYLRPLLSKGVPSVFKDL 326 (700)
T ss_pred chhHHHHHHHHHHHhhcCCCchhhhh
Confidence 33334445677778888876655543
No 134
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.31 E-value=0.0067 Score=57.87 Aligned_cols=110 Identities=15% Similarity=0.238 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCC
Q 048117 17 VCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGW 96 (352)
Q Consensus 17 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 96 (352)
-|.-+.+-|+..|+++.|+++|.+. ..++-.|..|.++|+++.|.++-.+. .|-......|..-..-.-+.|+
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgk 839 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGK 839 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcc
Confidence 3667788899999999999999765 34666788999999999998887664 3333445556555555666777
Q ss_pred HHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 048117 97 VDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM 143 (352)
Q Consensus 97 ~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 143 (352)
+.+|.+++-.+. .|+. -|.+|-+.|..|+.+++..+-
T Consensus 840 f~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 840 FAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred hhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 777777653221 2332 355666666666666666554
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.078 Score=44.48 Aligned_cols=181 Identities=18% Similarity=0.194 Sum_probs=124.2
Q ss_pred hC-CCCCHhH-HHHHHHHHHHcCCHHHHHHHHHhcccC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccH
Q 048117 9 SG-FRRNIRV-CNTLIDMYVKCGCLEGARRVFIEMEER-----TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNG 81 (352)
Q Consensus 9 ~g-~~~~~~~-~~~li~~~~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 81 (352)
+| +.++..+ |--+.-+...+|+.+.|...++....+ -+.-..+|. +-..|.+++|+++|+...+.. +.|.
T Consensus 44 ~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~--lEa~~~~~~A~e~y~~lL~dd-pt~~ 120 (289)
T KOG3060|consen 44 SGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML--LEATGNYKEAIEYYESLLEDD-PTDT 120 (289)
T ss_pred hcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH--HHHhhchhhHHHHHHHHhccC-cchh
Confidence 44 6677644 455566667789999999998887753 222222222 223688999999999998775 5577
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcc-hHHHHHHHH
Q 048117 82 VTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGV-VWGALLGGC 159 (352)
Q Consensus 82 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~li~~~ 159 (352)
+++--=+...-..|+--+|.+-+....+ .+..|...|.-|...|...|++++|.-.++++ -++|... -+..+-..+
T Consensus 121 v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~ 198 (289)
T KOG3060|consen 121 VIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVL 198 (289)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 7777666666667777778777777774 56788899999999999999999999999998 4456433 344454544
Q ss_pred Hhc---CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcc
Q 048117 160 RVH---KNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAE 197 (352)
Q Consensus 160 ~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 197 (352)
.-. .+.+.+.+.+.+..+..|. ....+...|..+.
T Consensus 199 Yt~gg~eN~~~arkyy~~alkl~~~---~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 199 YTQGGAENLELARKYYERALKLNPK---NLRALFGIYLCGS 236 (289)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhChH---hHHHHHHHHHHHH
Confidence 333 3567788888888887763 3334545554433
No 136
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.29 E-value=0.0013 Score=45.87 Aligned_cols=80 Identities=18% Similarity=0.268 Sum_probs=44.1
Q ss_pred cCCHHHHHHHHHHHHHcCC-CccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhhHHHHHHHHHhcCCHHHH
Q 048117 59 HGQAKEALTSFNKMIEIGI-KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP-QIEHYGCMVDLLSRAGFLQEA 136 (352)
Q Consensus 59 ~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~~A 136 (352)
+|+++.|+.+|+++.+..- .|+...+..+..++.+.|++++|..+++. . ...| +....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4666777777777765422 12344444466677777777777777665 2 1112 223333445666677777777
Q ss_pred HHHHHh
Q 048117 137 YEFIRN 142 (352)
Q Consensus 137 ~~~~~~ 142 (352)
.++|++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 776654
No 137
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.28 E-value=0.015 Score=55.23 Aligned_cols=139 Identities=12% Similarity=-0.013 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHcCCCccH-HHHHHHHHHHhcc--------CCHHHHHHHHHHhHH
Q 048117 44 RTVFTWSAMIQGLAIHG-----QAKEALTSFNKMIEIGIKPNG-VTFIGLLHACGHM--------GWVDEGRRFFYSMTT 109 (352)
Q Consensus 44 ~~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~m~~ 109 (352)
.|...|...+.+..... ....|..+|++..+ ..||- ..+..+..++... .++..+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 36778888887754422 26678888888876 35653 2333332222111 112223332222221
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 048117 110 EYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNG 184 (352)
Q Consensus 110 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 184 (352)
......+...|.++.-.+...|++++|...+++. ...|+...|..+-..+...|+.++|...+++...+.|..++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1112333456666655555667777777777776 55566667777777777777777777777777777776654
No 138
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.27 E-value=0.0048 Score=49.65 Aligned_cols=80 Identities=16% Similarity=0.009 Sum_probs=39.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 048117 119 HYGCMVDLLSRAGFLQEAYEFIRNM-PIKPN----GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIY 193 (352)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (352)
.+..+...|.+.|++++|...|++. ...|+ ...|..+...+.+.|+.++|...+.+..+..|.+...+..+..+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444444555555555555555544 11121 234455555555556666666655555555555444444444455
Q ss_pred HHccC
Q 048117 194 AEAER 198 (352)
Q Consensus 194 ~~~g~ 198 (352)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44443
No 139
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.25 E-value=0.0055 Score=50.09 Aligned_cols=98 Identities=19% Similarity=0.259 Sum_probs=76.2
Q ss_pred CCCCHhHHHHHHHHHHHc-----CCHHHHHHHHHhccc----CCHHHHHHHHHHHHHc----------------CCHHHH
Q 048117 11 FRRNIRVCNTLIDMYVKC-----GCLEGARRVFIEMEE----RTVFTWSAMIQGLAIH----------------GQAKEA 65 (352)
Q Consensus 11 ~~~~~~~~~~li~~~~~~-----g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~----------------g~~~~A 65 (352)
-..|-.+|..+|+.|.+. |.++-....+..|.+ +|..+|+.||+.+=+. .+.+-|
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~ 122 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECA 122 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHH
Confidence 457888999999999754 667777777777774 7999999999987432 246789
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHhccCCH-HHHHHHHHHhH
Q 048117 66 LTSFNKMIEIGIKPNGVTFIGLLHACGHMGWV-DEGRRFFYSMT 108 (352)
Q Consensus 66 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~~m~ 108 (352)
++++++|...|+-||..|+..|++.+++.+.. .+..++.--|.
T Consensus 123 i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 123 IDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988764 33333333343
No 140
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.25 E-value=0.018 Score=46.36 Aligned_cols=130 Identities=17% Similarity=0.169 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhhHH
Q 048117 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN--GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP-QIEHYG 121 (352)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~ 121 (352)
....|..+...+...|++++|+..|++.......|. ...+..+...+.+.|++++|...+..... ..| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 456677778888888999999999988876433222 35677778888888888888888887773 233 355666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccC
Q 048117 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAER 198 (352)
Q Consensus 122 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 198 (352)
.+...|...|+...+..-++.. ...+++|.++++...+..|++ +..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6667777777655544322211 012566777777777766654 4444555555544
No 141
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.078 Score=47.59 Aligned_cols=194 Identities=13% Similarity=0.078 Sum_probs=130.4
Q ss_pred CCCCHhHHHHHHHHHHHc--CCHHHHHHHHHhcc--c---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHH
Q 048117 11 FRRNIRVCNTLIDMYVKC--GCLEGARRVFIEME--E---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVT 83 (352)
Q Consensus 11 ~~~~~~~~~~li~~~~~~--g~~~~A~~~f~~m~--~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 83 (352)
+.|+...-...+.+|+.+ ++-..|-..|-... . -|+.-..++...+...|+.++|+..|++.+. +.|+.++
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~ 267 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVE 267 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhh
Confidence 444444555556666654 33334444433332 2 2788889999999999999999999999875 4565543
Q ss_pred -HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHH
Q 048117 84 -FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPN-GVVWGALLGGCR 160 (352)
Q Consensus 84 -~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~ 160 (352)
.....-.+.+.|+.++...+...+-.. .+-....|-.-...+....++..|+.+-++. ...|+ ...|-.=-+.+.
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~--~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAK--VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLI 345 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhh--hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHH
Confidence 111122345778888877777766532 1122233333334445667888898888776 44443 333333335678
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHH
Q 048117 161 VHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKL 208 (352)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (352)
+.++.+.|.-.|+....+.|.+...|.-|+..|...|++.+|.-+-+.
T Consensus 346 ~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred hccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 899999999999999999998888999999999999999998776554
No 142
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.24 E-value=0.0029 Score=57.32 Aligned_cols=100 Identities=11% Similarity=0.017 Sum_probs=82.6
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCH
Q 048117 88 LHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNI 165 (352)
Q Consensus 88 l~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~ 165 (352)
...+...|++++|.+.|++..+. -+.+...|..+..+|.+.|++++|+..+++. ...| +...|..+-.+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 45566789999999999999842 2335678888899999999999999999988 5555 566788888999999999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHH
Q 048117 166 DLAEEASRQLDQLDPLNNGYHVVL 189 (352)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~l 189 (352)
++|...|++..+..|.+......+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999999887655544
No 143
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.23 E-value=0.03 Score=51.77 Aligned_cols=119 Identities=10% Similarity=-0.011 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC---CCCC-CcchHHHHHHHHHhcCCHHHHHHHH
Q 048117 97 VDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM---PIKP-NGVVWGALLGGCRVHKNIDLAEEAS 172 (352)
Q Consensus 97 ~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 172 (352)
.+....+++.......+.|+. +|-.+|+.-.|..-+..|..+|.+. +..+ ++..+++++.-+| .++.+.|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 445555666666544556654 6888999989999999999999999 3344 6677888888777 67889999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccC
Q 048117 173 RQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKT 217 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 217 (352)
+.-.+..++.+.+....++.+...++-..++.+|++....++.++
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 998777777777777888889999999999999999988866543
No 144
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.22 E-value=0.0055 Score=55.50 Aligned_cols=102 Identities=12% Similarity=0.067 Sum_probs=82.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhhHHHHHHHHHhcC
Q 048117 53 IQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP-QIEHYGCMVDLLSRAG 131 (352)
Q Consensus 53 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g 131 (352)
...+...|++++|+++|++..+.. +-+...|..+..++.+.|++++|...++.... +.| +...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHhC
Confidence 456678899999999999998753 33566788888999999999999999999884 334 5678889999999999
Q ss_pred CHHHHHHHHHhC-CCCCCcchHHHHHHH
Q 048117 132 FLQEAYEFIRNM-PIKPNGVVWGALLGG 158 (352)
Q Consensus 132 ~~~~A~~~~~~m-~~~p~~~~~~~li~~ 158 (352)
++++|...|++. ...|+.......+.-
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999997 566765555544433
No 145
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.19 E-value=0.024 Score=49.60 Aligned_cols=192 Identities=14% Similarity=0.134 Sum_probs=123.7
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhccc-------C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCccH
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEE-------R--TVFTWSAMIQGLAIHGQAKEALTSFNKMIE----IGIKPNG 81 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~-------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~ 81 (352)
...|...-+.|-..|++++|.+.|....+ + -...|......|-+. ++++|+..|++..+ .| .|+.
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~ 112 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHH
Confidence 35577778888888999999888887642 1 124566666666555 99999999988753 33 3443
Q ss_pred --HHHHHHHHHHhcc-CCHHHHHHHHHHhHHhcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCC---CC-----
Q 048117 82 --VTFIGLLHACGHM-GWVDEGRRFFYSMTTEYGIIPQ----IEHYGCMVDLLSRAGFLQEAYEFIRNMP---IK----- 146 (352)
Q Consensus 82 --~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~----- 146 (352)
.++..+-..|-.. |++++|.+.|+....-+....+ ..++..+...+.+.|++++|.++|++.. ..
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~ 192 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK 192 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence 3677888888888 9999999999887643222222 3456778889999999999999999871 11
Q ss_pred CCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-----chHHHHHHHHHH--ccCHHHHHHHHHH
Q 048117 147 PNGV-VWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN-----GYHVVLSNIYAE--AERWEDVARVRKL 208 (352)
Q Consensus 147 p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~l~~~~~~--~g~~~~a~~~~~~ 208 (352)
.+.. .|-..+-++...||...|.+.++......|.-. .....|+.+|-. ...+.++..-|+.
T Consensus 193 ~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 193 YSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTT
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Confidence 1121 223344466778999999999999987665322 233456777632 2334444444443
No 146
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.19 E-value=0.0015 Score=49.36 Aligned_cols=102 Identities=14% Similarity=0.139 Sum_probs=66.6
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhc
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH 93 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 93 (352)
|..++.++|-++++.|+++....+.+..-.-|+. +-...+. --......|+..+..+++.+|+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~ 64 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGY 64 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHh
Confidence 3455666666666666666666666544332210 0001111 11234467888888888888888
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcC
Q 048117 94 MGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131 (352)
Q Consensus 94 ~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g 131 (352)
.|++..|.++.+...+.++++.+..+|..|+.-.....
T Consensus 65 n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 65 NGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 88888888888888888888888888888887554443
No 147
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.19 E-value=0.0064 Score=48.71 Aligned_cols=93 Identities=12% Similarity=-0.144 Sum_probs=65.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 048117 117 IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPN----GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSN 191 (352)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 191 (352)
...|..+...+...|++++|...|++. ...|+ ..+|..+-..+...|+.++|...++......|.....+..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666677777788888888888776 23232 2367777788888888888888888888777766666666666
Q ss_pred HHH-------HccCHHHHHHHHHHH
Q 048117 192 IYA-------EAERWEDVARVRKLM 209 (352)
Q Consensus 192 ~~~-------~~g~~~~a~~~~~~m 209 (352)
.|. +.|+++.|...+++-
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 666 777877666665543
No 148
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.15 E-value=0.0022 Score=42.24 Aligned_cols=57 Identities=19% Similarity=0.119 Sum_probs=41.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 156 LGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 156 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
...+.+.|++++|...|+.+.+..|.+...+..+..++...|++++|...|++..+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345667777777777777777777777777777777777777777777777776543
No 149
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.15 E-value=0.083 Score=54.35 Aligned_cols=195 Identities=13% Similarity=0.092 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccc-------C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCC--c-c
Q 048117 17 VCNTLIDMYVKCGCLEGARRVFIEMEE-------R--TVFTWSAMIQGLAIHGQAKEALTSFNKMIE----IGIK--P-N 80 (352)
Q Consensus 17 ~~~~li~~~~~~g~~~~A~~~f~~m~~-------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~--p-~ 80 (352)
..+.+-..+...|++++|...+++... + -..+++.+...+...|++++|...+++... .|.. | .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 345556667778999998888877653 1 123455566677888999999888888653 2221 1 2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCcchHH
Q 048117 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEY-GIIPQ--IEHYGCMVDLLSRAGFLQEAYEFIRNM----PIKPNGVVWG 153 (352)
Q Consensus 81 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~ 153 (352)
...+..+...+...|++++|...+.+...-. ...+. ...+..+...+...|+.++|.+.+.+. ........+.
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 2334444555667799999888887765311 11121 333444556777888988888877665 1111111111
Q ss_pred H-----HHHHHHhcCCHHHHHHHHHHHHhcCCCCcch----HHHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 154 A-----LLGGCRVHKNIDLAEEASRQLDQLDPLNNGY----HVVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 154 ~-----li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
. .+..+...|+.+.|...+.......+..... ...+..++...|+.++|...++...+
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 1233455778888888776654322111111 23566677888888888888887654
No 150
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.13 E-value=0.015 Score=46.59 Aligned_cols=81 Identities=12% Similarity=0.135 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHH
Q 048117 46 VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP--NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCM 123 (352)
Q Consensus 46 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~l 123 (352)
...|..+...+...|++++|+..|++.......| ...++..+-..+...|+.++|...++..... .+....++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 4566777777777888888888888876543222 1236667777777788888888877776632 12223445555
Q ss_pred HHHHH
Q 048117 124 VDLLS 128 (352)
Q Consensus 124 i~~~~ 128 (352)
...|.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55555
No 151
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.11 E-value=0.11 Score=53.58 Aligned_cols=198 Identities=17% Similarity=0.121 Sum_probs=130.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhcccC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcc--
Q 048117 16 RVCNTLIDMYVKCGCLEGARRVFIEMEER-----------TVFTWSAMIQGLAIHGQAKEALTSFNKMIEI--GIKPN-- 80 (352)
Q Consensus 16 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~-- 80 (352)
.+...+-..+...|+++.|...+++.... ....+..+...+...|++++|...+.+.... ...+.
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 611 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ 611 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH
Confidence 44556677788899999999988765431 1233445556677789999999999987542 11222
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCcc---
Q 048117 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY-----GCMVDLLSRAGFLQEAYEFIRNMPIK--PNGV--- 150 (352)
Q Consensus 81 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~--- 150 (352)
...+..+.......|+.++|.+.+.....-.........+ ...+..+...|+.+.|.+++...... ....
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 691 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQ 691 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHH
Confidence 3344455667778999999999888775321111111111 11224456689999999998776211 1111
Q ss_pred -hHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC--CCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 151 -VWGALLGGCRVHKNIDLAEEASRQLDQL----DP--LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 151 -~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
.+..+..++...|+.++|...++..... +. ....+...+..+|.+.|+.++|...+.+..+..
T Consensus 692 ~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 692 GQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 1345666788899999999999987652 11 112344567778899999999999999887654
No 152
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.09 E-value=0.0021 Score=42.86 Aligned_cols=64 Identities=19% Similarity=0.084 Sum_probs=53.2
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcc-CHHHHHHHHHHHHh
Q 048117 148 NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAE-RWEDVARVRKLMRN 211 (352)
Q Consensus 148 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 211 (352)
+..+|..+-..+.+.|++++|...|.+..+..|.++..+..+..+|.+.| ++++|.+.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45678888888888899999999998888888888888888888888888 68888888887654
No 153
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.03 Score=49.12 Aligned_cols=193 Identities=15% Similarity=0.090 Sum_probs=124.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHcCCCccHHH-HHHHHHHH
Q 048117 20 TLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQ-------AKEALTSFNKMIEIGIKPNGVT-FIGLLHAC 91 (352)
Q Consensus 20 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~ 91 (352)
.|+--|.+.+++.+|..+.++....++.-|-.-.-.++..|+ ..-|.+.|.-.-..+...|... -.++.+++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 455567899999999999888865444433322222233332 3445444443334444444432 33455556
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCcchHHHHH-HHHHhcCCHHHH
Q 048117 92 GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIK-PNGVVWGALL-GGCRVHKNIDLA 168 (352)
Q Consensus 92 ~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li-~~~~~~g~~~~a 168 (352)
.-..++|+..-.++.+.. +=...|..-+ .+..+++..|.+.+|.++|-.+ +.+ .|..+|-+++ ++|.+++.++.|
T Consensus 370 FL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 666778888888888773 3333344433 4778999999999999999888 222 3677877665 677889999988
Q ss_pred HHHHHHHHhcCCCCc-chHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Q 048117 169 EEASRQLDQLDPLNN-GYHVVLSNIYAEAERWEDVARVRKLMRNLGVKK 216 (352)
Q Consensus 169 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 216 (352)
..++-.+. .|.+. .....+.+-|-+++.+--|-+.|+.+...+..|
T Consensus 448 W~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 448 WDMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 77664432 22222 222355677889999999999999998766544
No 154
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.04 E-value=0.0013 Score=43.70 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=37.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 160 RVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 160 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
.+.|++++|...|+.+.+..|.+......+..+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677777777777777777777767777777777777777777777766543
No 155
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.03 E-value=0.19 Score=47.65 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHh-cCCC-----CcchHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 048117 163 KNIDLAEEASRQLDQ-LDPL-----NNGYHVVLSNIYAEAERWEDVARVRKLMRNLGV 214 (352)
Q Consensus 163 g~~~~a~~~~~~~~~-~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 214 (352)
|+..+-...+.++.+ ..|. ....+..+.+.|-..|+++.|+.+|++-.+-..
T Consensus 361 ~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred CChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 445555555555543 3332 123556778888888888888888887765443
No 156
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.01 E-value=0.018 Score=56.85 Aligned_cols=156 Identities=12% Similarity=-0.002 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-cHHH--HHHHHHH
Q 048117 17 VCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP-NGVT--FIGLLHA 90 (352)
Q Consensus 17 ~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t--~~~ll~a 90 (352)
.|..|=..|...-|...|.+.|+..-+- |..++.+....|++...+++|..+.-.--+ ..| -... +..+--.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q--ka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ--KAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh--hchHHHHHhhhhhcccc
Confidence 3444444555444555555555544432 344555555555555555555555211111 011 0111 1112223
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHH--HHHhcCCHHH
Q 048117 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGVVWGALLG--GCRVHKNIDL 167 (352)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~--~~~~~g~~~~ 167 (352)
|-+.++..++..-|+...+ --+-|...|..|..+|.++|++..|.++|.+. ..+|+ .+|...-. .-+..|.+++
T Consensus 572 yLea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-SKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred ccCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-hHHHHHHHHHHHHHhhhHHH
Confidence 3344445555544444331 11223445555555555555555555555555 23332 12222111 1234455555
Q ss_pred HHHHHHHHHh
Q 048117 168 AEEASRQLDQ 177 (352)
Q Consensus 168 a~~~~~~~~~ 177 (352)
+...+..+..
T Consensus 649 ald~l~~ii~ 658 (1238)
T KOG1127|consen 649 ALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 157
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.01 E-value=0.0062 Score=46.03 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=16.8
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHH
Q 048117 80 NGVTFIGLLHACGHMGWVDEGRRFFY 105 (352)
Q Consensus 80 ~~~t~~~ll~a~~~~g~~~~a~~~~~ 105 (352)
|..++..+|.++++.|+++....+++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~ 26 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIK 26 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 34566666777777777766666654
No 158
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.01 E-value=0.082 Score=50.93 Aligned_cols=202 Identities=13% Similarity=0.150 Sum_probs=116.0
Q ss_pred HHHHhCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc-
Q 048117 5 YSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN- 80 (352)
Q Consensus 5 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~- 80 (352)
++....+..|..+|-.|.-+...+|+++.+-+.|++...- ....|+.+-..|.-.|....|+.+.++-....-.|+
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCc
Confidence 3444556789999999999999999999999999987642 457899998999999999999999887654332343
Q ss_pred HHHHHHHHHHHh-ccCCHHHHHHHHHHhHHhcCCC---CChhhHHHHHHHHHhc-----------CCHHHHHHHHHhC--
Q 048117 81 GVTFIGLLHACG-HMGWVDEGRRFFYSMTTEYGII---PQIEHYGCMVDLLSRA-----------GFLQEAYEFIRNM-- 143 (352)
Q Consensus 81 ~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~g~~---~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m-- 143 (352)
...+-..-..|. +.+.++++..+-......++-+ .....|-.+.-+|+.. -...++++.+++.
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 333333333343 3456666665554444311111 1123333333334321 1122445555554
Q ss_pred --CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCcchHHHHHHHHHHccCHHHHHHHHHH
Q 048117 144 --PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL-DPLNNGYHVVLSNIYAEAERWEDVARVRKL 208 (352)
Q Consensus 144 --~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (352)
+-.|++.-|-++ -|+..++++.|.+...+..+. ..++...+..|.-.+...+++.+|+.+.+.
T Consensus 473 ~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 473 FDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred cCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 222333333222 234455566666666666654 334444555555555555666666555543
No 159
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.00 E-value=0.0025 Score=41.95 Aligned_cols=59 Identities=24% Similarity=0.145 Sum_probs=37.2
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048117 124 VDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182 (352)
Q Consensus 124 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 182 (352)
...+.+.|++++|.+.|++. ...| +...|..+-.++.+.|++++|...|+++.+..|++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 34566677777777777776 3334 45556666666777777777777777776666654
No 160
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.98 E-value=0.022 Score=56.99 Aligned_cols=147 Identities=10% Similarity=-0.019 Sum_probs=97.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHH-HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHH
Q 048117 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFI-GLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCM 123 (352)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~l 123 (352)
+...|..|+..+...+++++|.++.++-.+ ..|+...+- .+...+.+.++.+++..+ .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------~~ 89 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL------------------NL 89 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh------------------hh
Confidence 667888999999889999999999986665 356655432 222244555555554444 22
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHH
Q 048117 124 VDLLSRAGFLQEAYEFIRNMPIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDV 202 (352)
Q Consensus 124 i~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 202 (352)
++......++.-...+...|+.-+ +...+.++..+|.+.|+.+++..+++++.+..|.++...+.+...|+.. ++++|
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 222333333333333333332122 3346777888888888888888888888888888888888888888888 88888
Q ss_pred HHHHHHHHhc
Q 048117 203 ARVRKLMRNL 212 (352)
Q Consensus 203 ~~~~~~m~~~ 212 (352)
.+++.+....
T Consensus 169 ~~m~~KAV~~ 178 (906)
T PRK14720 169 ITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHH
Confidence 8888777655
No 161
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.96 E-value=0.03 Score=41.89 Aligned_cols=107 Identities=14% Similarity=0.106 Sum_probs=71.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhhHHHHHHHHHh
Q 048117 53 IQGLAIHGQAKEALTSFNKMIEIGIKPN--GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP-QIEHYGCMVDLLSR 129 (352)
Q Consensus 53 i~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~ 129 (352)
-.++-..|+.++|+.+|++....|.... ...+..+-+++...|++++|..+++....++.-.+ +......+.-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3456678999999999999998887665 33566778888899999999999988875421101 22222233346678
Q ss_pred cCCHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 048117 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCR 160 (352)
Q Consensus 130 ~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~ 160 (352)
.|+.++|++++-..- -++...|.--|..|.
T Consensus 88 ~gr~~eAl~~~l~~l-a~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL-AETLPRYRRAIRFYA 117 (120)
T ss_pred CCCHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 899999988775541 123335666665554
No 162
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.94 E-value=0.18 Score=44.80 Aligned_cols=77 Identities=10% Similarity=0.077 Sum_probs=34.6
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHH
Q 048117 126 LLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARV 205 (352)
Q Consensus 126 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 205 (352)
-+...|....|.++.++..+ |+..-|...|.+++..+++++..++... +.. |.-|...+.+|.+.|...+|..+
T Consensus 186 ~li~~~~~k~A~kl~k~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKs---PIGyepFv~~~~~~~~~~eA~~y 259 (319)
T PF04840_consen 186 KLIEMGQEKQAEKLKKEFKV-PDKRFWWLKIKALAENKDWDELEKFAKS--KKS---PIGYEPFVEACLKYGNKKEASKY 259 (319)
T ss_pred HHHHCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCC---CCChHHHHHHHHHCCCHHHHHHH
Confidence 33444555555555554443 3445555555555555555544443221 111 12344444444444444444444
Q ss_pred HHH
Q 048117 206 RKL 208 (352)
Q Consensus 206 ~~~ 208 (352)
...
T Consensus 260 I~k 262 (319)
T PF04840_consen 260 IPK 262 (319)
T ss_pred HHh
Confidence 443
No 163
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.94 E-value=0.014 Score=50.01 Aligned_cols=104 Identities=18% Similarity=0.117 Sum_probs=62.1
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHH
Q 048117 92 GHMGWVDEGRRFFYSMTTEYGIIP-QIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLA 168 (352)
Q Consensus 92 ~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a 168 (352)
.+.+++++|+..|.+.+ .+.| |.+-|..-..+|++.|.++.|.+-.+.. .+.| -..+|..|-.+|...|++++|
T Consensus 92 m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 45566777777776666 2333 3444555666677777777665555444 4444 344666777777777777777
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHccC
Q 048117 169 EEASRQLDQLDPLNNGYHVVLSNIYAEAER 198 (352)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 198 (352)
.+.|++.+.++|++..+...|--+=-+.+.
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 777777777777666544444333333333
No 164
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.93 E-value=0.19 Score=42.83 Aligned_cols=163 Identities=14% Similarity=0.046 Sum_probs=102.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHH-H---HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhH
Q 048117 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGV-T---FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY 120 (352)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t---~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~ 120 (352)
+...+-.....+.+.|++++|.+.|++.... -|+.. . .-.+..++-+.+++++|...+++..+.+.-.|+. -|
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~ 107 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DY 107 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HH
Confidence 4444434455556789999999999998774 23322 2 2345677888999999999999888655444544 23
Q ss_pred HHHHHHHHh--c---------------CC---HHHHHHHHHhC-CCCCCcc------hHH------------HHHHHHHh
Q 048117 121 GCMVDLLSR--A---------------GF---LQEAYEFIRNM-PIKPNGV------VWG------------ALLGGCRV 161 (352)
Q Consensus 121 ~~li~~~~~--~---------------g~---~~~A~~~~~~m-~~~p~~~------~~~------------~li~~~~~ 161 (352)
.-.+.+++. . .+ ..+|.+.|+++ ..-|++. ..- .+..-|.+
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~ 187 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK 187 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333321 1 12 23455555555 1123221 111 12223788
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHHccCHHHHHHHHHHHH
Q 048117 162 HKNIDLAEEASRQLDQLDPLNN---GYHVVLSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 162 ~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
.|.+..|..-++.+.+.-|..+ .....++.+|.+.|..++|.++.+.+.
T Consensus 188 ~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 188 RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 8999999999999988666544 344578899999999999999887664
No 165
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.19 Score=42.49 Aligned_cols=133 Identities=15% Similarity=0.054 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHH--
Q 048117 48 TWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD-- 125 (352)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~-- 125 (352)
.-+.+++.+.-.|.+.-.++++++.++..-+-++.....|...-.+.|+.+.|...|+...+. .-..|..+.+.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 334555555555666666666666666544445555556666666666666666666655533 22333333333322
Q ss_pred ---HHHhcCCHHHHHHHHHhCCCC-C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 048117 126 ---LLSRAGFLQEAYEFIRNMPIK-P-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181 (352)
Q Consensus 126 ---~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 181 (352)
.|.-.+++.+|...++++... | |.+.-|+-.-+..-.|+...|.+..+.+.+..|.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 233344555555556555211 1 2333333222333345566666666666555553
No 166
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.13 Score=51.22 Aligned_cols=138 Identities=15% Similarity=0.196 Sum_probs=104.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHH
Q 048117 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMV 124 (352)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li 124 (352)
....|+.+..+-.+.|...+|++-|-+. -|+..|.-+++.+++.|.+++-.+.+.-.+ +-.-+|.+ =+.||
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR-kk~~E~~i--d~eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR-KKVREPYI--DSELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH-HhhcCccc--hHHHH
Confidence 3468999999999999999999888542 367789999999999999999999876444 43556654 46899
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHH
Q 048117 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVA 203 (352)
Q Consensus 125 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 203 (352)
-+|++.+++.+-.+++. -||......+-.-|...|.++.|.-++..+. .|..|...+...|++..|.
T Consensus 1174 ~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS--------N~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS--------NFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHH
Confidence 99999999999887763 3777778888888888998888888876542 3334444444455544443
No 167
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.86 E-value=0.28 Score=43.07 Aligned_cols=186 Identities=15% Similarity=0.124 Sum_probs=117.0
Q ss_pred HHHHcCCHHHHHHHHHhcccCCH----------------HHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 048117 24 MYVKCGCLEGARRVFIEMEERTV----------------FTW--SAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFI 85 (352)
Q Consensus 24 ~~~~~g~~~~A~~~f~~m~~~~~----------------~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 85 (352)
.+.|.|.++.|..=|+...+.+. ..| -..+..+.-+|+...|+.....+.+. .+-|...|.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHH
Confidence 45688999999988887764211 122 23444555678888888888888774 233666677
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhC-C-------------------
Q 048117 86 GLLHACGHMGWVDEGRRFFYSMTTEYGIIP-QIEHYGCMVDLLSRAGFLQEAYEFIRNM-P------------------- 144 (352)
Q Consensus 86 ~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~------------------- 144 (352)
.-..+|...|.+..|..=++... .+.. +..+.--+-..+...|+.+.++..+++. .
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~as---kLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQAS---KLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHH---hccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHH
Confidence 77778888888777665443332 2222 2344444445555566655555555443 2
Q ss_pred ---------------------------CCCC--c---chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 048117 145 ---------------------------IKPN--G---VVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNI 192 (352)
Q Consensus 145 ---------------------------~~p~--~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 192 (352)
.+|. . ..+..+-.++...+++.+|.+...++....|++..++.--..+
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEA 350 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 2232 1 1233444556667788888888888888888777777666677
Q ss_pred HHHccCHHHHHHHHHHHHhcC
Q 048117 193 YAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 193 ~~~~g~~~~a~~~~~~m~~~g 213 (352)
|.--.++++|..-|+...+.+
T Consensus 351 ~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 351 YLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HhhhHHHHHHHHHHHHHHhcC
Confidence 777777788877777666543
No 168
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.84 E-value=0.0041 Score=41.24 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=19.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 048117 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMT 108 (352)
Q Consensus 59 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 108 (352)
.|++++|+++|+++.+.. +-|......+..+|.+.|++++|.++++.+.
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444443321 1133333334444444444444444444443
No 169
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.83 E-value=0.046 Score=54.16 Aligned_cols=180 Identities=12% Similarity=0.028 Sum_probs=129.1
Q ss_pred CCHHHHHHHHHhcccCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhccCCHHHHHHHH
Q 048117 29 GCLEGARRVFIEMEERTV---FTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP-NGVTFIGLLHACGHMGWVDEGRRFF 104 (352)
Q Consensus 29 g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~ 104 (352)
.+...|...|-+..+.|+ ..|..|...|...-+...|.+.|+...+- .| |........+.|++...++.|..+.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--Datdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--DATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 347777777776666554 68999999999888888999999988663 34 4446778899999999999999984
Q ss_pred HHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048117 105 YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182 (352)
Q Consensus 105 ~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 182 (352)
-...++.....-..-|.-.--.|-+.++...|..-|+.. .+.| |...|..+..+|...|....|.++|.++..+.|.+
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 322221111111112222334567889999999888887 6566 78899999999999999999999999999888875
Q ss_pred cchHHHHHHHHHHccCHHHHHHHHHHHH
Q 048117 183 NGYHVVLSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
...-.-..-+-+..|.+.+|...+....
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4322233344566777777777666553
No 170
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.82 E-value=0.3 Score=46.37 Aligned_cols=101 Identities=14% Similarity=0.109 Sum_probs=76.0
Q ss_pred CCChhhH--HHHHHHHHhcCCHHHHHHHHHhC-CCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 048117 114 IPQIEHY--GCMVDLLSRAGFLQEAYEFIRNM-PIKPNGV-VWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189 (352)
Q Consensus 114 ~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 189 (352)
+|....| -.++..|-+.|+++.|+.+++.. +-.|+.+ .|.+=.+.+...|++++|...+++..+++..+.....--
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 4554444 46788899999999999999987 4445433 344445778999999999999999998776554222244
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcCC
Q 048117 190 SNIYAEAERWEDVARVRKLMRNLGV 214 (352)
Q Consensus 190 ~~~~~~~g~~~~a~~~~~~m~~~g~ 214 (352)
.....+.++.++|.++.....+.|.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhccc
Confidence 5566789999999999999988774
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.82 E-value=0.063 Score=51.07 Aligned_cols=143 Identities=10% Similarity=0.030 Sum_probs=98.4
Q ss_pred hCCCCCHhHHHHHHHHHHHc--C---CHHHHHHHHHhcccC---CHHHHHHHHHHHHHcC--------CHHHHHHHHHHH
Q 048117 9 SGFRRNIRVCNTLIDMYVKC--G---CLEGARRVFIEMEER---TVFTWSAMIQGLAIHG--------QAKEALTSFNKM 72 (352)
Q Consensus 9 ~g~~~~~~~~~~li~~~~~~--g---~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g--------~~~~A~~l~~~m 72 (352)
.+.+.|...|...+.+.... + +.+.|..+|++..+. +...|..+..++.... +...+.+...+.
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 44567889999999886543 2 377999999998864 3345555444443321 123334444433
Q ss_pred HHc-CCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcc
Q 048117 73 IEI-GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGV 150 (352)
Q Consensus 73 ~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 150 (352)
... ....+...|..+--.....|++++|...+++.. .+.|+...|..+...|...|+.++|.+.+++. ...|...
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl---~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI---DLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 332 233455677766555566799999999999988 34578889999999999999999999999886 6667666
Q ss_pred hHHH
Q 048117 151 VWGA 154 (352)
Q Consensus 151 ~~~~ 154 (352)
+|..
T Consensus 488 t~~~ 491 (517)
T PRK10153 488 TLYW 491 (517)
T ss_pred hHHH
Confidence 6643
No 172
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.81 E-value=0.073 Score=39.96 Aligned_cols=139 Identities=14% Similarity=0.103 Sum_probs=84.3
Q ss_pred HcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 048117 58 IHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAY 137 (352)
Q Consensus 58 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 137 (352)
-.|..++..++..+.... .+..-+|-+|--....-+=+...++++.+-+- -| ...||++....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki----FD----------is~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI----FD----------ISKCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG----S-----------GGG-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh----cC----------chhhcchHHHH
Confidence 356666777777766543 24444555555544444555555555544321 11 12455666555
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Q 048117 138 EFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVK 215 (352)
Q Consensus 138 ~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 215 (352)
..+-.++. +..-....+......|.-+...++...+.+.+..++.....+..+|.+.|+..++.+++++.-++|++
T Consensus 77 ~C~~~~n~--~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRNK--LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhcc--hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 55555542 45667778889999999999999999987655555677788999999999999999999999999985
No 173
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.80 E-value=0.32 Score=47.09 Aligned_cols=96 Identities=23% Similarity=0.133 Sum_probs=75.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCcchHHHHHHH
Q 048117 117 IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEE--ASRQLDQLDPLNNGYHVVLSNI 192 (352)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~ 192 (352)
...|.-....+-..|...+|.+.|... -+.| ++.+-+++-..+.+.|+...+.. ++..+.+.+|.++..|..|-..
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v 763 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEV 763 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 445555555666777888888777766 5566 45567788888899998888887 8888899999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhc
Q 048117 193 YAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 193 ~~~~g~~~~a~~~~~~m~~~ 212 (352)
+-+.|+.++|-+-|+...+.
T Consensus 764 ~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 764 FKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHccchHHHHHHHHHHHhh
Confidence 99999999999999876553
No 174
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.78 E-value=0.038 Score=42.98 Aligned_cols=105 Identities=19% Similarity=0.214 Sum_probs=56.8
Q ss_pred CHhHHHHHHHHH---HHcCCHHHHHHHHHhcccC-------C------------------HHHHHHHHHHHHHcCCHHHH
Q 048117 14 NIRVCNTLIDMY---VKCGCLEGARRVFIEMEER-------T------------------VFTWSAMIQGLAIHGQAKEA 65 (352)
Q Consensus 14 ~~~~~~~li~~~---~~~g~~~~A~~~f~~m~~~-------~------------------~~~~~~li~~~~~~g~~~~A 65 (352)
|+..+-.++..- ...|+.+.+...+.++... + ..+...++..+...|++++|
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 344455554332 4456777777666665431 0 12344455556667777777
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhH----HhcCCCCChhh
Q 048117 66 LTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMT----TEYGIIPQIEH 119 (352)
Q Consensus 66 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~g~~~~~~~ 119 (352)
+.+.+.+... -+-|...|..+|.++...|+...|.++|+.+. ++.|+.|+..+
T Consensus 82 ~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 82 LRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 7777777654 23356667777777777777777777776554 24567776544
No 175
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.77 E-value=0.2 Score=46.78 Aligned_cols=195 Identities=14% Similarity=0.088 Sum_probs=134.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhhHHHHHHHHHhcCCH
Q 048117 56 LAIHGQAKEALTSFNKMIEIGIKP-NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGFL 133 (352)
Q Consensus 56 ~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li~~~~~~g~~ 133 (352)
+.+.|+..+|.-.|+...+. .| +...|.-|--.-...++-..|+.-+.+.. .+.|+ ....-+|.-.|...|.=
T Consensus 295 lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl---~LdP~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCL---ELDPTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHH---hcCCccHHHHHHHHHHHhhhhhH
Confidence 45788999999999988765 35 44467666666667777777777776665 45555 45555666666666655
Q ss_pred HHHHHHHHhC---------------------------------------------CCCCCcchHHHHHHHHHhcCCHHHH
Q 048117 134 QEAYEFIRNM---------------------------------------------PIKPNGVVWGALLGGCRVHKNIDLA 168 (352)
Q Consensus 134 ~~A~~~~~~m---------------------------------------------~~~p~~~~~~~li~~~~~~g~~~~a 168 (352)
.+|++.++.- +.++|+.....|--.|--.|++++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 5565555332 2235666677777778889999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEEeCCCCchhHHHHHHH
Q 048117 169 EEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQM 248 (352)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (352)
...|+.+.+..|.+...|+-|--.++...+-++|..-|++..+. +|. ....-+|- -..+..-|..+++...
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~--yVR~RyNl-----gIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPG--YVRVRYNL-----GISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCC--eeeeehhh-----hhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999988763 332 11111111 1122345777888887
Q ss_pred HHHHHHHHHHcCcccCC
Q 048117 249 WEKLLDGMKLKGYIPNT 265 (352)
Q Consensus 249 ~~~l~~~m~~~g~~p~~ 265 (352)
+-..+. |...+..+..
T Consensus 521 lL~AL~-mq~ks~~~~~ 536 (579)
T KOG1125|consen 521 LLEALS-MQRKSRNHNK 536 (579)
T ss_pred HHHHHH-hhhccccccc
Confidence 666554 6666544433
No 176
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.73 E-value=0.008 Score=40.47 Aligned_cols=57 Identities=14% Similarity=0.074 Sum_probs=41.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 157 GGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
..|.+.+++++|.++++.+....|.++..+.....+|.+.|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456677777777777777777777777777777777777777777777777776543
No 177
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.73 E-value=0.018 Score=48.89 Aligned_cols=101 Identities=18% Similarity=0.221 Sum_probs=83.9
Q ss_pred HHHHHHHHhcc--cCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCC--------
Q 048117 32 EGARRVFIEME--ERTVFTWSAMIQGLAIH-----GQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGW-------- 96 (352)
Q Consensus 32 ~~A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-------- 96 (352)
-..++.|...+ ++|-.+|-+++..|... +.++-....++.|.+.|+.-|..+|..||+.+=+..-
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34567788877 78999999999998765 5577777788999999999999999999998866532
Q ss_pred --------HHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCH
Q 048117 97 --------VDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133 (352)
Q Consensus 97 --------~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~ 133 (352)
-+-+..++++|. .+|+.||-.+-..|++++++.+..
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHhhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhcccccc
Confidence 245788999999 579999999999999999998864
No 178
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.72 E-value=0.071 Score=41.63 Aligned_cols=88 Identities=9% Similarity=-0.031 Sum_probs=39.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCccHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhc
Q 048117 52 MIQGLAIHGQAKEALTSFNKMIEIGIKPNGV-TFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130 (352)
Q Consensus 52 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~ 130 (352)
+-.-+.+.|++++|..+|+-.... .|... -|-.|-.+|-..|++++|...|..... .. +-|...+-.+-.+|...
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ-IK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cC-CCCchHHHHHHHHHHHc
Confidence 333444455555555555554432 23222 233344444445555555555554441 11 12234444444455555
Q ss_pred CCHHHHHHHHHhC
Q 048117 131 GFLQEAYEFIRNM 143 (352)
Q Consensus 131 g~~~~A~~~~~~m 143 (352)
|+.+.|.+.|+..
T Consensus 117 G~~~~A~~aF~~A 129 (157)
T PRK15363 117 DNVCYAIKALKAV 129 (157)
T ss_pred CCHHHHHHHHHHH
Confidence 5555555555443
No 179
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.70 E-value=0.0064 Score=47.42 Aligned_cols=68 Identities=21% Similarity=0.222 Sum_probs=50.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHH-----hcCCccCC
Q 048117 151 VWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMR-----NLGVKKTP 218 (352)
Q Consensus 151 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~ 218 (352)
....++..+...|+++.|......+....|.+...+..++.+|...|+..+|.++|+.+. +.|+.|++
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 455677778888999999999999888888888888899999999999999999888774 35777644
No 180
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.35 Score=48.44 Aligned_cols=187 Identities=10% Similarity=0.059 Sum_probs=116.3
Q ss_pred ChHhHHHHhCCC--CCHhHHHHHHHHHHHcCCHHHHHHHHHhcc-cCCH-----HHHHH---------------------
Q 048117 1 RVHEYSNQSGFR--RNIRVCNTLIDMYVKCGCLEGARRVFIEME-ERTV-----FTWSA--------------------- 51 (352)
Q Consensus 1 ~i~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-~~~~-----~~~~~--------------------- 51 (352)
|+.+.+++.+++ .|+.-.+.-+.++...+-..+-.++++++. ++++ ..=|.
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLd 1047 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLD 1047 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhc
Confidence 345666676664 467777888888888888888888888775 2211 11111
Q ss_pred ------HHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHH
Q 048117 52 ------MIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125 (352)
Q Consensus 52 ------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~ 125 (352)
+......++-+++|+.+|+... .+......||. ..+.+|.|.+.-+..- ...+|+.+..
T Consensus 1048 nyDa~~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n-------~p~vWsqlak 1112 (1666)
T KOG0985|consen 1048 NYDAPDIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN-------EPAVWSQLAK 1112 (1666)
T ss_pred cCCchhHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC-------ChHHHHHHHH
Confidence 2223344455666666665532 23333333332 2344555555433221 2457888888
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHH
Q 048117 126 LLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARV 205 (352)
Q Consensus 126 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 205 (352)
+-.+.|.+.+|.+-|-+.. |+..|.-++..+.+.|.+++..+++...++.... +..-..|+-+|++.+++.+.+++
T Consensus 1113 AQL~~~~v~dAieSyikad---Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1113 AQLQGGLVKDAIESYIKAD---DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred HHHhcCchHHHHHHHHhcC---CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHHHHHhchHHHHHHH
Confidence 8888888888888776553 6678888888888888888888888777662221 12335677778887777766654
Q ss_pred H
Q 048117 206 R 206 (352)
Q Consensus 206 ~ 206 (352)
.
T Consensus 1189 i 1189 (1666)
T KOG0985|consen 1189 I 1189 (1666)
T ss_pred h
Confidence 3
No 181
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.59 E-value=0.033 Score=47.99 Aligned_cols=97 Identities=11% Similarity=-0.057 Sum_probs=75.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc----chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH---HH
Q 048117 117 IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNG----VVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYH---VV 188 (352)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~ 188 (352)
...|..-+..+.+.|++++|...|+.. ...|+. ..+-.+-..|...|++++|...|..+.+..|+++... ..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 345667666667789999999999888 334543 3666788889999999999999999998777654433 34
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 189 LSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 189 l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
+...|...|+.++|.++|+.+.+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5667889999999999999887653
No 182
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.13 Score=48.24 Aligned_cols=179 Identities=12% Similarity=-0.001 Sum_probs=101.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHh--cc
Q 048117 20 TLIDMYVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACG--HM 94 (352)
Q Consensus 20 ~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~--~~ 94 (352)
+=++.+.+.|++++|.+....+.. .|...+..=+-++.+.+++++|+.+.+.=.. ...+.+-+ +=.||| +.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~--fEKAYc~Yrl 92 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFF--FEKAYCEYRL 92 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhh--HHHHHHHHHc
Confidence 346777888888888888887764 2566677777788888889888855543211 01111111 233443 67
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHH-HHhcCCHHHHHHHH
Q 048117 95 GWVDEGRRFFYSMTTEYGIIPQI-EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGG-CRVHKNIDLAEEAS 172 (352)
Q Consensus 95 g~~~~a~~~~~~m~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~-~~~~g~~~~a~~~~ 172 (352)
+..|+|...++ |..++. .+-..-...+.|.|++++|+++++.+-- -+...+..-+.+ +...+-.-.+. +.
T Consensus 93 nk~Dealk~~~------~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k-n~~dd~d~~~r~nl~a~~a~l~~~-~~ 164 (652)
T KOG2376|consen 93 NKLDEALKTLK------GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAK-NNSDDQDEERRANLLAVAAALQVQ-LL 164 (652)
T ss_pred ccHHHHHHHHh------cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHhhhHH-HH
Confidence 88888888776 333332 3455555667888999999999988821 122233332222 11111001111 11
Q ss_pred HHHHhcCCC-CcchHHHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 173 RQLDQLDPL-NNGYHVVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 173 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
+. ....|. +...+......+...|+|.+|.+++..-.+
T Consensus 165 q~-v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 165 QS-VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred Hh-ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 11 112221 111223344567889999999999988743
No 183
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.58 E-value=0.02 Score=49.03 Aligned_cols=100 Identities=21% Similarity=0.266 Sum_probs=78.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhhHHHHHHHHHhcC
Q 048117 54 QGLAIHGQAKEALTSFNKMIEIGIKP-NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAG 131 (352)
Q Consensus 54 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li~~~~~~g 131 (352)
+-+.+.+++.+|+..|.+.++ +.| |.+-|..=..+|++.|..+.|++=.+... .+.|. ..+|..|-.+|.-.|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 345678899999999999988 455 56667777889999999999887665544 44555 578999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCcchHHHHHHH
Q 048117 132 FLQEAYEFIRNM-PIKPNGVVWGALLGG 158 (352)
Q Consensus 132 ~~~~A~~~~~~m-~~~p~~~~~~~li~~ 158 (352)
++++|.+.|++. .+.|+..+|-.=|..
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 999999998887 888988877654443
No 184
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.57 E-value=0.0051 Score=40.94 Aligned_cols=64 Identities=20% Similarity=0.204 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 048117 117 IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHK-NIDLAEEASRQLDQLDP 180 (352)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~ 180 (352)
..+|..+...+.+.|++++|+..|++. ...| +...|..+-.++...| +.++|.+.++...+..|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 445666666666666666666666665 2233 4445666666666666 56666666666665544
No 185
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.56 E-value=0.48 Score=41.70 Aligned_cols=189 Identities=19% Similarity=0.161 Sum_probs=134.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHH---HHHHcCCHHHHHHHHHHHHHcCCCccHHHH-HHHHHHHhcc
Q 048117 19 NTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQ---GLAIHGQAKEALTSFNKMIEIGIKPNGVTF-IGLLHACGHM 94 (352)
Q Consensus 19 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~ 94 (352)
--|=..+.-.|++.+|+.-|....+-|+..|-++.+ .|...|+...|+.=|....+ .+||-..- ..--..+.+.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhc
Confidence 344455666788999999999888888888877754 67778888888888888776 57875431 1122345688
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC--------------hhhH--HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHH
Q 048117 95 GWVDEGRRFFYSMTTEYGIIPQ--------------IEHY--GCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALL 156 (352)
Q Consensus 95 g~~~~a~~~~~~m~~~~g~~~~--------------~~~~--~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li 156 (352)
|.+++|..=|+...+. .|+ ..++ ...+..+.-.|+...|...+..+ .+.| |...|..=.
T Consensus 120 Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Ra 196 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARA 196 (504)
T ss_pred ccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHH
Confidence 9999999999888743 221 1111 12333445677888888888777 5555 666777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 157 GGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
.+|...|++..|..=+....++..++.....-+...+-..|+.+.++...++..+.
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 88889999998888777777776666666666777778888888888877776654
No 186
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.43 E-value=0.44 Score=46.70 Aligned_cols=185 Identities=13% Similarity=0.040 Sum_probs=113.1
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhcccC-----------CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcc
Q 048117 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEER-----------TV-FTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPN 80 (352)
Q Consensus 13 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----------~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 80 (352)
.+..+|..+..||.+..+++-|.-.+-.|..- |. ..=.-..-...+.|..++|..+|++-++
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR------ 828 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR------ 828 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH------
Confidence 35577888888888888888887777777631 11 1111111122456888888888888765
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC----------------
Q 048117 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP---------------- 144 (352)
Q Consensus 81 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---------------- 144 (352)
|..|=+.|-..|.+++|.++-+.=- .+.. ..||..-..-+-..++++.|++.|++.+
T Consensus 829 ---~DLlNKlyQs~g~w~eA~eiAE~~D---RiHL-r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~ 901 (1416)
T KOG3617|consen 829 ---YDLLNKLYQSQGMWSEAFEIAETKD---RIHL-RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQ 901 (1416)
T ss_pred ---HHHHHHHHHhcccHHHHHHHHhhcc---ceeh-hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHH
Confidence 3334556667788888888654211 2222 2456556666666778888888877763
Q ss_pred ------CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc---------------------CCCCcchHHHHHHHHHHcc
Q 048117 145 ------IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL---------------------DPLNNGYHVVLSNIYAEAE 197 (352)
Q Consensus 145 ------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~g 197 (352)
...|...|.---.-+-..|+++.|..++...+.. ...+......|..+|...|
T Consensus 902 ~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g 981 (1416)
T KOG3617|consen 902 IEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDG 981 (1416)
T ss_pred HHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhH
Confidence 1122333332223334567777777777665430 0112234456889999999
Q ss_pred CHHHHHHHHHHHH
Q 048117 198 RWEDVARVRKLMR 210 (352)
Q Consensus 198 ~~~~a~~~~~~m~ 210 (352)
++.+|..+|.+.+
T Consensus 982 ~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 982 DVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 187
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.41 E-value=0.39 Score=43.31 Aligned_cols=162 Identities=11% Similarity=0.060 Sum_probs=78.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC---CCccHHHHHHHHHHHhc---cCCHHHHHHHHHHhHHhcCCCCChhhHHHHH
Q 048117 51 AMIQGLAIHGQAKEALTSFNKMIEIG---IKPNGVTFIGLLHACGH---MGWVDEGRRFFYSMTTEYGIIPQIEHYGCMV 124 (352)
Q Consensus 51 ~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~ll~a~~~---~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li 124 (352)
.++-+|-...+++.-+++.+.|...- +.-....--....|+.+ .|+.++|.+++..+... .-.++..+|..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHHHH
Confidence 44445666666666666666665420 10011111123334444 66666666666663322 3445555555555
Q ss_pred HHHHh---------cCCHHHHHHHHHhC-CCCCCcch---HHHHHHHHHhcCC-HHHHHHHH---HH-HHh---cCC-CC
Q 048117 125 DLLSR---------AGFLQEAYEFIRNM-PIKPNGVV---WGALLGGCRVHKN-IDLAEEAS---RQ-LDQ---LDP-LN 182 (352)
Q Consensus 125 ~~~~~---------~g~~~~A~~~~~~m-~~~p~~~~---~~~li~~~~~~g~-~~~a~~~~---~~-~~~---~~~-~~ 182 (352)
..|-. ...+++|...+.+- .++||..+ +.+|+........ -.+..++- .. +.+ ..+ .+
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 54421 12366677777766 44554443 2223322221111 11222222 11 111 111 11
Q ss_pred cchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 183 NGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
.-.+..+..++.-.|+.++|.+..+.|.+..
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 1223467788888888888888888887663
No 188
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.37 E-value=0.21 Score=44.35 Aligned_cols=109 Identities=18% Similarity=0.091 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHH
Q 048117 48 TWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127 (352)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~ 127 (352)
+.+..|.-+...|+...|.++-++.+ -||..-|-..+.+++..+++++-.++-.. +-++.-|-..+..+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHH
Confidence 45556677777888888877766652 37777788888888888888876664321 22456788888888
Q ss_pred HhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 048117 128 SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQ 174 (352)
Q Consensus 128 ~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 174 (352)
.+.|...+|..++..++ +..-+..|.+.|++.+|.+...+
T Consensus 248 ~~~~~~~eA~~yI~k~~-------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP-------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhCC-------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888888887742 24556677777777777665433
No 189
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.25 Score=45.80 Aligned_cols=188 Identities=11% Similarity=0.048 Sum_probs=109.1
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhcccCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHH
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERTV----------FTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVT 83 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 83 (352)
+..-++..-..|...|........-+...+..- .+...+-.+|.+.++++.|+..|.+.....-+||..+
T Consensus 256 ~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls 335 (539)
T KOG0548|consen 256 DITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLS 335 (539)
T ss_pred hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH
Confidence 334444555555666655555444444332211 1222233455556667777777776554444444322
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHH
Q 048117 84 FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI-EHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCR 160 (352)
Q Consensus 84 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 160 (352)
+....+++....+... -+.|.. .-.-.=.+.+.+.|++..|.+.+.++ ...| |...|..-..+|.
T Consensus 336 ---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~ 403 (539)
T KOG0548|consen 336 ---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL 403 (539)
T ss_pred ---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 1122233333322222 223332 11112245667888999998888887 3345 6778888888899
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 161 VHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
+.|.+..|..=.+...++.|+....|.-=..++--..+|++|.+.|++-.+.+
T Consensus 404 kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 404 KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999888888888888888766666544455556677888888888766654
No 190
>PRK15331 chaperone protein SicA; Provisional
Probab=96.33 E-value=0.031 Score=43.88 Aligned_cols=88 Identities=15% Similarity=0.015 Sum_probs=72.2
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHH
Q 048117 124 VDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWED 201 (352)
Q Consensus 124 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 201 (352)
..-+...|++++|..+|+-+ -..| +..-|..|-.+|-..++++.|..+|...-...++++.+..-...+|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33456789999999999988 2222 444577777778888999999999999888778888888888899999999999
Q ss_pred HHHHHHHHHh
Q 048117 202 VARVRKLMRN 211 (352)
Q Consensus 202 a~~~~~~m~~ 211 (352)
|+.-|....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998876
No 191
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.7 Score=43.56 Aligned_cols=192 Identities=10% Similarity=0.024 Sum_probs=120.3
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHH-HHHHHH
Q 048117 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTV--FTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGV-TFIGLL 88 (352)
Q Consensus 12 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll 88 (352)
+-|...+..=+-+..+.+.+++|..+.+.-...+. +-+--=..+..+.+..++|+..++ |..++.. +...=.
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~A 117 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRA 117 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh-----cccccchHHHHHHH
Confidence 34556677777778889999999977665443211 111112334456899999999988 4444443 555566
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHH---HHHhcCC
Q 048117 89 HACGHMGWVDEGRRFFYSMTTEYGII-PQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLG---GCRVHKN 164 (352)
Q Consensus 89 ~a~~~~g~~~~a~~~~~~m~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~---~~~~~g~ 164 (352)
+.|-+.|++++|..+|+.+.+. +.+ -+...-..|+.+ +.-..+. +.+..+..| ..+|..+-+ .+...|+
T Consensus 118 QvlYrl~~ydealdiY~~L~kn-~~dd~d~~~r~nl~a~----~a~l~~~-~~q~v~~v~-e~syel~yN~Ac~~i~~gk 190 (652)
T KOG2376|consen 118 QVLYRLERYDEALDIYQHLAKN-NSDDQDEERRANLLAV----AAALQVQ-LLQSVPEVP-EDSYELLYNTACILIENGK 190 (652)
T ss_pred HHHHHHhhHHHHHHHHHHHHhc-CCchHHHHHHHHHHHH----HHhhhHH-HHHhccCCC-cchHHHHHHHHHHHHhccc
Confidence 7888999999999999999843 332 122222222222 1111222 455566555 445555543 3577899
Q ss_pred HHHHHHHHHHHHh-----cCCCC-c---------chHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Q 048117 165 IDLAEEASRQLDQ-----LDPLN-N---------GYHVVLSNIYAEAERWEDVARVRKLMRNLGVK 215 (352)
Q Consensus 165 ~~~a~~~~~~~~~-----~~~~~-~---------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 215 (352)
+..|+++++.... +.-.+ . ..-..|.-.+-..|+-++|..++....+....
T Consensus 191 y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 191 YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC
Confidence 9999999998722 11111 1 11224556677899999999999999887653
No 192
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.19 E-value=0.024 Score=38.08 Aligned_cols=60 Identities=15% Similarity=0.140 Sum_probs=43.6
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 048117 125 DLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNG 184 (352)
Q Consensus 125 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 184 (352)
..|.+.+++++|.++++.+ ...| +...|...-..+.+.|++++|...++...+..|+++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 4577788888888888877 4444 4555666777788888888888888888877776543
No 193
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.077 Score=45.66 Aligned_cols=102 Identities=18% Similarity=0.070 Sum_probs=82.8
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhc-C--CHHHHHHHHHHHHhcCCCCcchHHH
Q 048117 114 IPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVH-K--NIDLAEEASRQLDQLDPLNNGYHVV 188 (352)
Q Consensus 114 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~-g--~~~~a~~~~~~~~~~~~~~~~~~~~ 188 (352)
+-|...|--|-..|.+.|+.+.|..-|.+. .+.| +...+..+-.++... | ...++..+++++.+.+|.+......
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 446889999999999999999999999887 3333 445555555554332 2 3478999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCc
Q 048117 189 LSNIYAEAERWEDVARVRKLMRNLGVK 215 (352)
Q Consensus 189 l~~~~~~~g~~~~a~~~~~~m~~~g~~ 215 (352)
|...+...|++.+|...|+.|.+..-.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999986543
No 194
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.12 E-value=1.6 Score=43.21 Aligned_cols=186 Identities=12% Similarity=0.064 Sum_probs=102.5
Q ss_pred HHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHH
Q 048117 26 VKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRR 102 (352)
Q Consensus 26 ~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 102 (352)
.+.|..++|..+++....+ |..|...+-..|-..++.++|..+|++..+ .-|+..-...+..+|.+.+.+.+-.+
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777666655432 666777777777777777777777777655 34666666667777777776655444
Q ss_pred HHHHhHHhcCCCCChhhHHHHHHHHHhcC----------CHHHHHHHHHhCCCCC----CcchHHHHHHHHHhcCCHHHH
Q 048117 103 FFYSMTTEYGIIPQIEHYGCMVDLLSRAG----------FLQEAYEFIRNMPIKP----NGVVWGALLGGCRVHKNIDLA 168 (352)
Q Consensus 103 ~~~~m~~~~g~~~~~~~~~~li~~~~~~g----------~~~~A~~~~~~m~~~p----~~~~~~~li~~~~~~g~~~~a 168 (352)
.-=++.+ ..+-+...+=++++.+...- -+.-|.+.++.+-.++ +..-.-.-+..+-..|+.++|
T Consensus 132 aa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ea 209 (932)
T KOG2053|consen 132 AALQLYK--NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEA 209 (932)
T ss_pred HHHHHHH--hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHH
Confidence 4333332 22223333334444433221 1122444444441111 111112222334556677788
Q ss_pred HHHHHH-HHh-cCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Q 048117 169 EEASRQ-LDQ-LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVK 215 (352)
Q Consensus 169 ~~~~~~-~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 215 (352)
..++.. ... ..+.+...-+.-++.+...++|.+..++-.++.++|-.
T Consensus 210 l~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 210 LEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 777743 222 22322223334557778888888888888887776654
No 195
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.17 Score=44.65 Aligned_cols=148 Identities=18% Similarity=0.162 Sum_probs=108.3
Q ss_pred HHHHHHHHHhcccC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHH
Q 048117 31 LEGARRVFIEMEER-----TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFY 105 (352)
Q Consensus 31 ~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 105 (352)
+.-|.+.|.-..+. ++.--.+|.+.+.-..++++++-.++..+..=..-|...| .+.+|.+..|...+|+++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHh
Confidence 55677777765542 3334556777777788899999999988776333344444 57899999999999999997
Q ss_pred HhHHhcCCC-CChhhHHH-HHHHHHhcCCHHHHHHHHHhCCCCCCcchHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048117 106 SMTTEYGII-PQIEHYGC-MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGA-LLGGCRVHKNIDLAEEASRQLDQLDPLN 182 (352)
Q Consensus 106 ~m~~~~g~~-~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~~~~~~~~~ 182 (352)
.+. |.+ .|..+|-+ |...|.+++.++.|.+++-++....+..+.-. +.+-|.+.+.+--|-+.|+++...+|.+
T Consensus 418 ~is---~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 418 RIS---GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred hhc---ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 665 333 45667765 45788999999999999998864334444333 3456888899988999999999888864
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=0.55 Score=39.82 Aligned_cols=129 Identities=12% Similarity=0.045 Sum_probs=94.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCcchHHHHH----
Q 048117 84 FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM---PIKPNGVVWGALL---- 156 (352)
Q Consensus 84 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li---- 156 (352)
.++++....-.|.+.-...++++.+++ .-+.++.....|..+-.+.|+.+.|...|+.. .-+.|..+.+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 455666666677777777888888853 55667888889999999999999999999955 1123444444433
Q ss_pred -HHHHhcCCHHHHHHHHHHHHhcCCCCcchHH--HHHHHHHHccCHHHHHHHHHHHHhcCCc
Q 048117 157 -GGCRVHKNIDLAEEASRQLDQLDPLNNGYHV--VLSNIYAEAERWEDVARVRKLMRNLGVK 215 (352)
Q Consensus 157 -~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 215 (352)
..+.-.++...|...+.++...+|.++.+.+ +|+.+| .|+..+|.+....|.+....
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY--LGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH--HHHHHHHHHHHHHHhccCCc
Confidence 3356677889999999999888887776655 455554 68999999999999876443
No 197
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.10 E-value=0.22 Score=43.64 Aligned_cols=172 Identities=12% Similarity=0.056 Sum_probs=97.0
Q ss_pred CHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCcc-HHHHHHHHHHHhccCCHHHHHHHH
Q 048117 30 CLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIE----IGIKPN-GVTFIGLLHACGHMGWVDEGRRFF 104 (352)
Q Consensus 30 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 104 (352)
++++|..+|++ ..+.|-..|++++|.+.|.+... .+-+.+ ...|......|.+. ++++|...+
T Consensus 30 ~~e~Aa~~y~~-----------Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~ 97 (282)
T PF14938_consen 30 DYEEAADLYEK-----------AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECY 97 (282)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHH
T ss_pred CHHHHHHHHHH-----------HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHH
Confidence 55555555544 45556666666666666666521 111111 12344444444333 666666666
Q ss_pred HHhHH---hcCCCCC-hhhHHHHHHHHHhc-CCHHHHHHHHHhC------CCCC--CcchHHHHHHHHHhcCCHHHHHHH
Q 048117 105 YSMTT---EYGIIPQ-IEHYGCMVDLLSRA-GFLQEAYEFIRNM------PIKP--NGVVWGALLGGCRVHKNIDLAEEA 171 (352)
Q Consensus 105 ~~m~~---~~g~~~~-~~~~~~li~~~~~~-g~~~~A~~~~~~m------~~~p--~~~~~~~li~~~~~~g~~~~a~~~ 171 (352)
+.... +.|-... ..++..+...|-.. |++++|.+.|++. .-.+ -...+..+...+.+.|++++|..+
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~ 177 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEI 177 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 55543 1121111 34555666677777 8899888888776 1122 133566777889999999999999
Q ss_pred HHHHHhcCCCCc-------chHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 172 SRQLDQLDPLNN-------GYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 172 ~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
|+++......++ ..+...+-++...|+...|.+.+++.....
T Consensus 178 ~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 178 YEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999875321111 122334446677899999999999987643
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.00 E-value=0.17 Score=43.61 Aligned_cols=100 Identities=11% Similarity=0.045 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----cch
Q 048117 81 GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI----EHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPN----GVV 151 (352)
Q Consensus 81 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~ 151 (352)
...|...+....+.|++++|...|+.+.+.+ |+. ..+--+...|...|++++|...|+.+ ..-|+ ...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 3456666666667799999999999999653 442 46778889999999999999999998 22232 334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 048117 152 WGALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183 (352)
Q Consensus 152 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 183 (352)
+-.+...+...|+.+.|..+++.+.+..|...
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 44456678889999999999999999888754
No 199
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.95 E-value=0.033 Score=37.98 Aligned_cols=60 Identities=18% Similarity=0.314 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC---cc-HHHHHHHHHHHhccCCHHHHHHHHHHh
Q 048117 48 TWSAMIQGLAIHGQAKEALTSFNKMIEI--GIK---PN-GVTFIGLLHACGHMGWVDEGRRFFYSM 107 (352)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~---p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m 107 (352)
+|+.+-..|...|++++|+..|++..+. ... |+ ..++..+-.++...|++++|.+.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555555555555555555554321 011 11 234555555555556666655555544
No 200
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.70 E-value=0.39 Score=39.73 Aligned_cols=170 Identities=11% Similarity=0.065 Sum_probs=87.4
Q ss_pred HHHHcCCHHHHHHHHHhcccC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccH--HHHHHHHHHHhccC
Q 048117 24 MYVKCGCLEGARRVFIEMEER------TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNG--VTFIGLLHACGHMG 95 (352)
Q Consensus 24 ~~~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g 95 (352)
.+.+.|++++|.+.|+.+... -..+.-.+..++.+.|++++|...|++..+. -|+. .-+...+.+.+...
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHH
Confidence 345567777777777777642 1234555667777777777777777777643 1221 12222222222111
Q ss_pred CHHHHHHHHHHhHHhcCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 048117 96 WVDEGRRFFYSMTTEYGIIP-----QIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEE 170 (352)
Q Consensus 96 ~~~~a~~~~~~m~~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~ 170 (352)
...... . ....+ -...+..++.-|=.+....+|...+..+....-..-+ .+..-|.+.|.+..|..
T Consensus 92 ~~~~~~------~--~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~-~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 92 QIPGIL------R--SDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHEL-YIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHHH---------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHCTT-HHHHHH
T ss_pred hCccch------h--cccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcccHHHHHH
Confidence 111000 0 00000 0123444444455555555555554444211111111 24456888999999999
Q ss_pred HHHHHHhcCCCCcch---HHHHHHHHHHccCHHHHHH
Q 048117 171 ASRQLDQLDPLNNGY---HVVLSNIYAEAERWEDVAR 204 (352)
Q Consensus 171 ~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~ 204 (352)
-++.+.+.-|++... ...++.+|.+.|..+.+..
T Consensus 163 r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 163 RFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 999999877765533 3467888999998885543
No 201
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.65 E-value=0.024 Score=38.71 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=5.9
Q ss_pred HHHHHHHhcCCHHHHHH
Q 048117 122 CMVDLLSRAGFLQEAYE 138 (352)
Q Consensus 122 ~li~~~~~~g~~~~A~~ 138 (352)
.+...|.+.|++++|+.
T Consensus 10 ~la~~~~~~~~~~~A~~ 26 (78)
T PF13424_consen 10 NLARVYRELGRYDEALD 26 (78)
T ss_dssp HHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHcCCHHHHHH
Confidence 33333333333333333
No 202
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.49 E-value=0.26 Score=36.88 Aligned_cols=88 Identities=15% Similarity=0.037 Sum_probs=52.0
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---cch-HHHHHHHH
Q 048117 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQ--IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPN---GVV-WGALLGGC 159 (352)
Q Consensus 87 ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~-~~~li~~~ 159 (352)
+-.++-..|+.++|..+|++... .|+... ...+-.+...|...|++++|..+|++. ...|+ ... ...+.-++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~-~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALA-AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 34455667778888888877774 365544 234445666777778888887777776 22233 111 12222345
Q ss_pred HhcCCHHHHHHHHHHH
Q 048117 160 RVHKNIDLAEEASRQL 175 (352)
Q Consensus 160 ~~~g~~~~a~~~~~~~ 175 (352)
...|+.++|...+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 6667777776666443
No 203
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.42 E-value=0.51 Score=46.57 Aligned_cols=128 Identities=13% Similarity=0.157 Sum_probs=78.2
Q ss_pred HcCCHHHHHHHHHhcccCC-HHHHHHHHHHH--HHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHH
Q 048117 27 KCGCLEGARRVFIEMEERT-VFTWSAMIQGL--AIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRF 103 (352)
Q Consensus 27 ~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 103 (352)
..+++..|.+......++- -..|...+.++ .+.|+.++|..+++.....+.. |..|...+-.+|...++.+++..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 4566666666666554431 13344444444 4567777887777766544433 677777777777778888888887
Q ss_pred HHHhHHhcCCCCChhhHHHHHHHHHhcCCHHH----HHHHHHhCCCCCCcchHHHHHHHHH
Q 048117 104 FYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQE----AYEFIRNMPIKPNGVVWGALLGGCR 160 (352)
Q Consensus 104 ~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~p~~~~~~~li~~~~ 160 (352)
|+... +..|+......+..+|.|.+.+.+ |+++++..|- +...+-++++...
T Consensus 100 Ye~~~---~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk--~~yyfWsV~Slil 155 (932)
T KOG2053|consen 100 YERAN---QKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK--RAYYFWSVISLIL 155 (932)
T ss_pred HHHHH---hhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc--ccchHHHHHHHHH
Confidence 77766 345666666666677777776654 4555554443 3344445555543
No 204
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.40 E-value=1.1 Score=36.00 Aligned_cols=155 Identities=12% Similarity=0.060 Sum_probs=108.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC-CCChhhHHHHHHHHHhc
Q 048117 52 MIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGI-IPQIEHYGCMVDLLSRA 130 (352)
Q Consensus 52 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~-~~~~~~~~~li~~~~~~ 130 (352)
+..+..+.=+++..+.-..+-. .+.|+...-..|-.+..+.|+..+|...|++... |+ .-|....-.+.++....
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~--~~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~ 137 (251)
T COG4700 62 LLMALQQKLDPERHLREATEEL--AIAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAI 137 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHH--hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhh
Confidence 3444455555555433333222 2568877777899999999999999999998883 65 45677778888888899
Q ss_pred CCHHHHHHHHHhC-CCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHH
Q 048117 131 GFLQEAYEFIRNM-PIKP---NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVR 206 (352)
Q Consensus 131 g~~~~A~~~~~~m-~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 206 (352)
+++..|...++.+ ...| ++.+--.+-..+...|....|+..|+.....-|.. ..-.....++++.|+.+++..-+
T Consensus 138 ~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 138 QEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred ccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHH
Confidence 9999999999888 2222 23344456688899999999999999988865542 23333445567888877776555
Q ss_pred HHHHh
Q 048117 207 KLMRN 211 (352)
Q Consensus 207 ~~m~~ 211 (352)
..+.+
T Consensus 217 ~~v~d 221 (251)
T COG4700 217 VAVVD 221 (251)
T ss_pred HHHHH
Confidence 44443
No 205
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.35 E-value=0.054 Score=32.36 Aligned_cols=40 Identities=30% Similarity=0.249 Sum_probs=31.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 048117 150 VVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVL 189 (352)
Q Consensus 150 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 189 (352)
.+|..+-..|.+.|++++|.++++++.+..|+++..+..|
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 3577788888888999999999998888888887665554
No 206
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.29 E-value=1.2 Score=36.89 Aligned_cols=151 Identities=13% Similarity=0.047 Sum_probs=83.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC--ccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHh
Q 048117 52 MIQGLAIHGQAKEALTSFNKMIEIGIK--PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129 (352)
Q Consensus 52 li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~ 129 (352)
....+.+.|++.+|...|+++...--. --....-.+..++-+.|+.+.|...++.+.+.+.-.|.. -+...+.+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~~~ 89 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHHH
Confidence 344566788999999999998764211 122344567788888899999999998888664444432 23333333322
Q ss_pred cCCHHHHHHHHHhCCCCCC-------cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHH
Q 048117 130 AGFLQEAYEFIRNMPIKPN-------GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDV 202 (352)
Q Consensus 130 ~g~~~~A~~~~~~m~~~p~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 202 (352)
........ ....| ...+..+|.-|=.+....+|......+...- ...-..+...|.+.|.+..|
T Consensus 90 ~~~~~~~~------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l---a~~e~~ia~~Y~~~~~y~aA 160 (203)
T PF13525_consen 90 YKQIPGIL------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL---AEHELYIARFYYKRGKYKAA 160 (203)
T ss_dssp HHHHHHHH-------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH---HHHHHHHHHHHHCTT-HHHH
T ss_pred HHhCccch------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcccHHHH
Confidence 22111111 00111 1234445555555555555555554443311 11222466789999999999
Q ss_pred HHHHHHHHhc
Q 048117 203 ARVRKLMRNL 212 (352)
Q Consensus 203 ~~~~~~m~~~ 212 (352)
..-++.+.+.
T Consensus 161 ~~r~~~v~~~ 170 (203)
T PF13525_consen 161 IIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 207
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.23 E-value=1.7 Score=37.08 Aligned_cols=153 Identities=10% Similarity=0.131 Sum_probs=98.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccC--C-HHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhc-
Q 048117 21 LIDMYVKCGCLEGARRVFIEMEER--T-VFT---WSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH- 93 (352)
Q Consensus 21 li~~~~~~g~~~~A~~~f~~m~~~--~-~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~- 93 (352)
....+.+.|++++|.+.|+..... + ... .-.+..++.+.+++++|...|++..+.--.-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 344456689999999999998753 2 222 234567788999999999999999864222222344444444331
Q ss_pred -c---------------CC---HHHHHHHHHHhHHhcCCCCChh------h-----H-------HHHHHHHHhcCCHHHH
Q 048117 94 -M---------------GW---VDEGRRFFYSMTTEYGIIPQIE------H-----Y-------GCMVDLLSRAGFLQEA 136 (352)
Q Consensus 94 -~---------------g~---~~~a~~~~~~m~~~~g~~~~~~------~-----~-------~~li~~~~~~g~~~~A 136 (352)
. .+ ..+|...|+.+++++ |+.. . . -.+...|.+.|.+.-|
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA 194 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAV 194 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 1 11 345667777777543 3311 0 0 1233457788888888
Q ss_pred HHHHHhC----CCC-CCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048117 137 YEFIRNM----PIK-PNGVVWGALLGGCRVHKNIDLAEEASRQLD 176 (352)
Q Consensus 137 ~~~~~~m----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 176 (352)
..=|+.+ +-. ........++.+|...|..++|......+.
T Consensus 195 ~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 195 VNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 7777776 322 234456678899999999999988876654
No 208
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.16 E-value=0.63 Score=44.38 Aligned_cols=197 Identities=15% Similarity=0.052 Sum_probs=106.4
Q ss_pred HHHHhCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccC--CHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHH--c
Q 048117 5 YSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER--TVFTWSA-----MIQGLAIHGQAKEALTSFNKMIE--I 75 (352)
Q Consensus 5 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~-----li~~~~~~g~~~~A~~l~~~m~~--~ 75 (352)
.+.+.|-.|+... +...++-.|.+.+|-++|.+--.. -...|+- ...-+...|..++-..+.++--+ .
T Consensus 625 ~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr 701 (1081)
T KOG1538|consen 625 ERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWAR 701 (1081)
T ss_pred HHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhh
Confidence 4556666676644 334455566777777777654322 1112221 12233334444443333333211 1
Q ss_pred CC-CccHHHHHHHHHHHhccCCHHHHHHHHH-----HhHHhcCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 048117 76 GI-KPNGVTFIGLLHACGHMGWVDEGRRFFY-----SMTTEYGII---PQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIK 146 (352)
Q Consensus 76 g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~-----~m~~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 146 (352)
.+ .|-. ....+..+|+.++|..+.. +|.-+-+-+ .+..+...+..-+-+...+.-|.++|.+|+..
T Consensus 702 ~~kePka-----AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ 776 (1081)
T KOG1538|consen 702 NIKEPKA-----AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL 776 (1081)
T ss_pred hcCCcHH-----HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH
Confidence 11 1211 1222334466555554421 111111112 22344555555556677888899999999632
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH----------HHHHHHHHHccCHHHHHHHHHHHHhcCCc
Q 048117 147 PNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYH----------VVLSNIYAEAERWEDVARVRKLMRNLGVK 215 (352)
Q Consensus 147 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 215 (352)
. +++......+++.+|..+.+...+..|+....| .-.-.+|.+.|+-.+|.++++++....+.
T Consensus 777 k------siVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav~ 849 (1081)
T KOG1538|consen 777 K------SLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAVA 849 (1081)
T ss_pred H------HHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhhh
Confidence 2 466677788899999988888766555432222 22456788999999999999988765443
No 209
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.10 E-value=0.2 Score=46.01 Aligned_cols=97 Identities=13% Similarity=0.004 Sum_probs=61.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcc----hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 048117 116 QIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGV----VWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLS 190 (352)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 190 (352)
+...++.+..+|.+.|++++|+..|++. .+.|+.. +|..+-.+|...|+.++|...+++..+..+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 3566777888888888888888888774 6666643 4778888888888888888888887764211 121111
Q ss_pred H--HHHHccCHHHHHHHHHHHHhcCCc
Q 048117 191 N--IYAEAERWEDVARVRKLMRNLGVK 215 (352)
Q Consensus 191 ~--~~~~~g~~~~a~~~~~~m~~~g~~ 215 (352)
. .+....+.++..++++..++.|..
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 0 111223344566666666666654
No 210
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.81 Score=39.54 Aligned_cols=101 Identities=16% Similarity=0.078 Sum_probs=50.8
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhc-C--CHHHHHHHHHhC-CCCCC-cchHHH
Q 048117 80 NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA-G--FLQEAYEFIRNM-PIKPN-GVVWGA 154 (352)
Q Consensus 80 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~-g--~~~~A~~~~~~m-~~~p~-~~~~~~ 154 (352)
|...|..|-.+|...|+.+.|..-|....+-.| ++...+..+..++... | ...++.++|+++ ...|+ ..+-..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 455566666666666666666666655553212 2233344444333322 1 233456666665 33343 333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048117 155 LLGGCRVHKNIDLAEEASRQLDQLDPLN 182 (352)
Q Consensus 155 li~~~~~~g~~~~a~~~~~~~~~~~~~~ 182 (352)
|-..+.+.|++.+|...|+.|.+..|.+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 4445666666666666666666644443
No 211
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.06 E-value=0.65 Score=44.70 Aligned_cols=93 Identities=19% Similarity=0.222 Sum_probs=61.8
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh--cCC----------
Q 048117 113 IIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ--LDP---------- 180 (352)
Q Consensus 113 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~---------- 180 (352)
++-+....-.+.+++.+.|.-++|.+.+-+-+. |. +.+..|....++.+|.++.+...- .+.
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll 921 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL-PK-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLL 921 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhccC-cH-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 344566677888999999999999988877652 22 456777777888777777665321 100
Q ss_pred CCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 181 LNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 181 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
.+. ...--|..+.+.|+.-+|-+++.+|.++
T Consensus 922 ~~~-~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 922 ADA-NHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred hhc-chHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 000 1112456788888888888888888653
No 212
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.04 E-value=0.13 Score=47.08 Aligned_cols=65 Identities=11% Similarity=-0.177 Sum_probs=59.2
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc---hHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 148 NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNG---YHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 148 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
+...|+.+-.+|.+.|++++|...|++..+..|++.. .+..+..+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5667999999999999999999999999999998774 4889999999999999999999998875
No 213
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.91 E-value=1.3 Score=34.01 Aligned_cols=126 Identities=11% Similarity=0.023 Sum_probs=63.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHH
Q 048117 49 WSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS 128 (352)
Q Consensus 49 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~ 128 (352)
-..++..+.+.+.+.....+++.+...+ ..+...++.++..|++... +...+.+.. .++.......+..|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 3445556666666666666666666554 2455566666666665432 222222221 112223334556666
Q ss_pred hcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 048117 129 RAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH-KNIDLAEEASRQLDQLDPLNNGYHVVLSNIYA 194 (352)
Q Consensus 129 ~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (352)
+.+.++++..++.+++. |...+..+..+ ++.+.|.+++.. +.++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 66666666666666642 22233333333 566666666554 112335555554443
No 214
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.90 E-value=2.8 Score=37.81 Aligned_cols=172 Identities=16% Similarity=0.120 Sum_probs=91.3
Q ss_pred HcCCHHHHHHHHHhccc-C------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 048117 27 KCGCLEGARRVFIEMEE-R------------------------------------TVFTWSAMIQGLAIHGQAKEALTSF 69 (352)
Q Consensus 27 ~~g~~~~A~~~f~~m~~-~------------------------------------~~~~~~~li~~~~~~g~~~~A~~l~ 69 (352)
-.|+.++|++-|+.|.. | -...|.+.+...+..|+++.|+++.
T Consensus 132 ~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 132 LEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred hcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHH
Confidence 36999999999999863 1 1256778888888899999999988
Q ss_pred HHHHHc-CCCccHHH--HHHHHHHHhc---cCCHHHHHHHHHHhHHhcCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHh
Q 048117 70 NKMIEI-GIKPNGVT--FIGLLHACGH---MGWVDEGRRFFYSMTTEYGIIPQIEH-YGCMVDLLSRAGFLQEAYEFIRN 142 (352)
Q Consensus 70 ~~m~~~-g~~p~~~t--~~~ll~a~~~---~g~~~~a~~~~~~m~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~ 142 (352)
+.-++. -+.+|..- -..|+.+-.. ..+...|...-.+ ...+.||..- -..-..+|.+.|++.++-.+++.
T Consensus 212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~---a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~ 288 (531)
T COG3898 212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE---ANKLAPDLVPAAVVAARALFRDGNLRKGSKILET 288 (531)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH---HhhcCCccchHHHHHHHHHHhccchhhhhhHHHH
Confidence 877532 24444432 1222222111 1122333332221 2345565332 22233567778888888888777
Q ss_pred C-CCCCCcchHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHH
Q 048117 143 M-PIKPNGVVWGALLGGCRVHKNIDL-AEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVA 203 (352)
Q Consensus 143 m-~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 203 (352)
+ .-+|.+..|...+. .+.|+... -.+-...+..+.|++......+..+-...|++..|.
T Consensus 289 aWK~ePHP~ia~lY~~--ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~AR 349 (531)
T COG3898 289 AWKAEPHPDIALLYVR--ARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAAR 349 (531)
T ss_pred HHhcCCChHHHHHHHH--hcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHH
Confidence 7 44566555544332 33343211 111112223345555444444444444455544443
No 215
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.61 E-value=2.7 Score=39.74 Aligned_cols=159 Identities=11% Similarity=0.039 Sum_probs=104.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc-CCCccH-----HHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCChhh
Q 048117 50 SAMIQGLAIHGQAKEALTSFNKMIEI-GIKPNG-----VTFIGLLHACGH----MGWVDEGRRFFYSMTTEYGIIPQIEH 119 (352)
Q Consensus 50 ~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~-----~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~g~~~~~~~ 119 (352)
..+++..+-.|+-+.+++++.+-.+. |+.-.. .+|..++..++. ....+.+.+++..+.++ -|+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHH
Confidence 34455556678999999999887543 232222 234444444443 45678899999988854 577666
Q ss_pred HHHHH-HHHHhcCCHHHHHHHHHhCC-CC-----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH-HHHH
Q 048117 120 YGCMV-DLLSRAGFLQEAYEFIRNMP-IK-----PNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV-VLSN 191 (352)
Q Consensus 120 ~~~li-~~~~~~g~~~~A~~~~~~m~-~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~l~~ 191 (352)
|.-.- ..+...|++++|.+.|++.- .+ .....+--+.-.+....++++|...|..+.+........|. ....
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 65443 45667899999999999752 11 12223334445567788999999999999885554444554 4445
Q ss_pred HHHHccCH-------HHHHHHHHHHHh
Q 048117 192 IYAEAERW-------EDVARVRKLMRN 211 (352)
Q Consensus 192 ~~~~~g~~-------~~a~~~~~~m~~ 211 (352)
++...|+. ++|.++|.+...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 56778888 888888887754
No 216
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.60 E-value=1.8 Score=40.40 Aligned_cols=153 Identities=12% Similarity=0.016 Sum_probs=98.8
Q ss_pred HHcCCHHHHHHHHH--hcc-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHH
Q 048117 26 VKCGCLEGARRVFI--EME-ERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRR 102 (352)
Q Consensus 26 ~~~g~~~~A~~~f~--~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 102 (352)
.-.|+++++.+..+ ++. .-+..-.+.++.-+-+.|.++.|+.+-.+-.. -.....+.|+++.|.+
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALE 339 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHH
Confidence 34688888655554 111 12345588889999999999999988655322 2334457799999988
Q ss_pred HHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048117 103 FFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182 (352)
Q Consensus 103 ~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 182 (352)
+.++ .++...|..|.+...+.|+++-|.+.|.+.+ -|..|+-.|...|+.+...++.+.....+-
T Consensus 340 ~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-- 404 (443)
T PF04053_consen 340 IAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERGD-- 404 (443)
T ss_dssp HCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence 5432 3367799999999999999999999999875 466778888889999888888777665432
Q ss_pred cchHHHHHHHHHHccCHHHHHHHHHH
Q 048117 183 NGYHVVLSNIYAEAERWEDVARVRKL 208 (352)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (352)
++....++.-.|+.++..+++.+
T Consensus 405 ---~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 ---INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHH
Confidence 22223344456777777766553
No 217
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.55 E-value=0.3 Score=41.76 Aligned_cols=97 Identities=16% Similarity=0.196 Sum_probs=67.9
Q ss_pred CCCHhHHHHHHHHHHHc-----CCHHHHHHHHHhcc----cCCHHHHHHHHHHHHHc----------------CCHHHHH
Q 048117 12 RRNIRVCNTLIDMYVKC-----GCLEGARRVFIEME----ERTVFTWSAMIQGLAIH----------------GQAKEAL 66 (352)
Q Consensus 12 ~~~~~~~~~li~~~~~~-----g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~----------------g~~~~A~ 66 (352)
+.|-.+|-+.+..+... +.++--...++.|+ ++|..+|+.||+.+=+- .+-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 44666677777766543 44555555555565 46888888888776432 2345689
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHhccCCH-HHHHHHHHHhH
Q 048117 67 TSFNKMIEIGIKPNGVTFIGLLHACGHMGWV-DEGRRFFYSMT 108 (352)
Q Consensus 67 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~~m~ 108 (352)
+++++|...|+.||..+-..|++++.+.+.. .+..++.--|-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 9999999999999999999999999998864 33444444444
No 218
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.51 E-value=2.1 Score=34.55 Aligned_cols=100 Identities=13% Similarity=0.193 Sum_probs=47.9
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC--C-CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchH
Q 048117 112 GIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM--P-IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL--NNGYH 186 (352)
Q Consensus 112 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~ 186 (352)
.+.|++..--.|.+++.+.|+..+|...|.+. | ..-|....-.+.++....++...+...++.+-+-.|. .+...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 34455555555555555555555555555554 1 2223344444444445555555555555554442221 12233
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 187 VVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 187 ~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
..+...|...|+..+|+.-|+....
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH
Confidence 3444555555555555555554443
No 219
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.49 E-value=1.9 Score=42.58 Aligned_cols=75 Identities=15% Similarity=0.079 Sum_probs=50.7
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHH
Q 048117 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168 (352)
Q Consensus 89 ~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a 168 (352)
.-.-..|+.|.|+.+|+... -|-+++...|-.|++++|-++-++-+ |....-.|.+.|-..|++.+|
T Consensus 920 qYlES~GemdaAl~~Y~~A~----------D~fs~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~A 986 (1416)
T KOG3617|consen 920 QYLESVGEMDAALSFYSSAK----------DYFSMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKA 986 (1416)
T ss_pred HHHhcccchHHHHHHHHHhh----------hhhhheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHH
Confidence 33344566666666665443 25556666667777888777777765 445555677888888888888
Q ss_pred HHHHHHHH
Q 048117 169 EEASRQLD 176 (352)
Q Consensus 169 ~~~~~~~~ 176 (352)
..+|.+..
T Consensus 987 v~FfTrAq 994 (1416)
T KOG3617|consen 987 VKFFTRAQ 994 (1416)
T ss_pred HHHHHHHH
Confidence 88887764
No 220
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.42 E-value=2.2 Score=34.58 Aligned_cols=196 Identities=19% Similarity=0.101 Sum_probs=143.8
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhcc-----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEME-----ERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH 89 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 89 (352)
...+......+...+++..+...+.... ......+..+...+...+....+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 5778888888999999999988888764 23556777788888888999999999999887544432 22222223
Q ss_pred -HHhccCCHHHHHHHHHHhHHhcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--cchHHHHHHHHHhcC
Q 048117 90 -ACGHMGWVDEGRRFFYSMTTEYGI--IPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPN--GVVWGALLGGCRVHK 163 (352)
Q Consensus 90 -a~~~~g~~~~a~~~~~~m~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~li~~~~~~g 163 (352)
++...|+++.+...+..... ... ......+......+...++.+.|...+.+. ...++ ...+..+-..+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 78899999999999998853 121 123445555555577889999999999888 33333 567888888899999
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 164 NIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
+.+.+...+.......|........+...+...+..+.+...+....+.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999998877763334444445555777789998888877654
No 221
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.37 E-value=0.043 Score=30.76 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=27.5
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHccCHHHHH
Q 048117 172 SRQLDQLDPLNNGYHVVLSNIYAEAERWEDVA 203 (352)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 203 (352)
|++..+..|+++..+..|...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55667788999999999999999999999886
No 222
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.32 E-value=1.8 Score=33.15 Aligned_cols=122 Identities=13% Similarity=0.177 Sum_probs=57.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccC
Q 048117 19 NTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMG 95 (352)
Q Consensus 19 ~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 95 (352)
..+|..+.+.+....+...++.+... +....|.++..|++.. ....++.+.. .++......++..|.+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34555555556666666655554432 3445566666666543 2333333331 122233334555555556
Q ss_pred CHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 048117 96 WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA-GFLQEAYEFIRNMPIKPNGVVWGALLGGCR 160 (352)
Q Consensus 96 ~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~~~~~li~~~~ 160 (352)
.++++..++..+.. |...+..+... ++++.|.+++.+-. +...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~~---~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQN---NPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 66555555544321 11122222222 55666666555422 3445555555443
No 223
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=3.4 Score=35.86 Aligned_cols=143 Identities=13% Similarity=0.058 Sum_probs=83.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCH
Q 048117 54 QGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133 (352)
Q Consensus 54 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~ 133 (352)
......|+..+|..+|....+..- -+...-..+..+|...|+.+.|..++..+..+ --........+-|..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 345667788888888887765421 22344456777788888888888888766532 1111112223344555555555
Q ss_pred HHHHHHHHhCCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCcchHHHHHHHHHHccC
Q 048117 134 QEAYEFIRNMPIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQ--LDPLNNGYHVVLSNIYAEAER 198 (352)
Q Consensus 134 ~~A~~~~~~m~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 198 (352)
.+...+-.+..-.| |...=-.+-..+...|+.+.|...+-.+.+ .+..+...-..|++.+.-.|.
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 55555555553345 444444566667777887777665555443 344455566667776666663
No 224
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.19 E-value=1.8 Score=39.72 Aligned_cols=132 Identities=11% Similarity=0.119 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhH-HHH
Q 048117 46 VFTWSAMIQGLAIHGQAKEALTSFNKMIEIG-IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHY-GCM 123 (352)
Q Consensus 46 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~-~~l 123 (352)
...|...|+.-.+..-.+.|..+|-+..+.| +.++...++++|.-++ .|+...|..+|+.=... -||...| +-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 3566667777666666777777777777777 5666667777776554 35666677777644422 2333333 455
Q ss_pred HHHHHhcCCHHHHHHHHHhC--CCCCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 048117 124 VDLLSRAGFLQEAYEFIRNM--PIKPN--GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181 (352)
Q Consensus 124 i~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 181 (352)
+..+.+.++-+.|..+|+.. .++.+ ...|..+|.--..-|++..+..+-+++....|.
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 56666777777777777754 22222 446777777777777777777777776665554
No 225
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.16 E-value=1.2 Score=40.74 Aligned_cols=124 Identities=19% Similarity=0.270 Sum_probs=97.8
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhccc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHH-HHHH
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEE-----RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTF-IGLL 88 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll 88 (352)
..+|..+++.-.+..-++.|+++|-+..+ +++..++++|.-++ .|+...|..+|+-=... -||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 56788899999999999999999998875 48899999999887 57788999999865442 3555443 4567
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 048117 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQ--IEHYGCMVDLLSRAGFLQEAYEFIRNM 143 (352)
Q Consensus 89 ~a~~~~g~~~~a~~~~~~m~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m 143 (352)
.-+...++-+.|..+|+..+. .+..+ ...|-.+|+-=+.-|++..|..+=+.|
T Consensus 474 ~fLi~inde~naraLFetsv~--r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 474 LFLIRINDEENARALFETSVE--RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHH--HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 777889999999999996663 33333 568999999889999998887766666
No 226
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=1.1 Score=40.50 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=73.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 048117 117 IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYA 194 (352)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (352)
..+++.|.-.|.+.+++.+|++.-.+. ...| |....-.=-.+|...|+++.|+..|+.+.+..|.+.....-|+.+--
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 346778888899999999998887776 4343 55555555678899999999999999999999998766677776666
Q ss_pred HccCHHHH-HHHHHHHHh
Q 048117 195 EAERWEDV-ARVRKLMRN 211 (352)
Q Consensus 195 ~~g~~~~a-~~~~~~m~~ 211 (352)
+.....+. .++|..|-.
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 65555444 778888864
No 227
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=2.9 Score=35.22 Aligned_cols=189 Identities=14% Similarity=0.096 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhccc-----CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH----HcCCCccHH
Q 048117 16 RVCNTLIDMYVKCGCLEGARRVFIEMEE-----RT----VFTWSAMIQGLAIHGQAKEALTSFNKMI----EIGIKPNGV 82 (352)
Q Consensus 16 ~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p~~~ 82 (352)
..|---..+|....++++|...+.+..+ ++ ..+|...+-..-+...+.|+.++|++.. +.| .|+..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-spdtA 110 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-SPDTA 110 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CcchH
Confidence 3455556778888888888877666542 11 2344444444445566777777777652 333 45544
Q ss_pred HH--HHHHHHHhccCCHHHHHHHHHHhHHhcCC----CCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-----CC--CCc
Q 048117 83 TF--IGLLHACGHMGWVDEGRRFFYSMTTEYGI----IPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP-----IK--PNG 149 (352)
Q Consensus 83 t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~--p~~ 149 (352)
.. .-... ....-++++|++++++-..-.-. ..-...|..+-..|.+..++++|-..|.+-+ +. |+.
T Consensus 111 AmaleKAak-~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~ 189 (308)
T KOG1585|consen 111 AMALEKAAK-ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ 189 (308)
T ss_pred HHHHHHHHH-HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH
Confidence 32 11111 12345677777777665421111 1113446666677888888888766665542 11 111
Q ss_pred -chHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCcchHHHHHHHHHHccCHHHHHHHHH
Q 048117 150 -VVWGALLGGCRVHKNIDLAEEASRQLDQ----LDPLNNGYHVVLSNIYAEAERWEDVARVRK 207 (352)
Q Consensus 150 -~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 207 (352)
..|-+.|-.+.-..++..|++.++.--+ ..+.+..+...|+.+| ..|+.+++.++..
T Consensus 190 ~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 190 CKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 1244555556666788999999988544 4556666777898988 6689988877653
No 228
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.03 E-value=1.8 Score=41.85 Aligned_cols=63 Identities=16% Similarity=0.121 Sum_probs=39.2
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhccc-CCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048117 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE-RTV------------FTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76 (352)
Q Consensus 12 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~~~------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 76 (352)
.|.+..|..|...-.+.-+++-|+..|-.... +.+ ..-.+=|.+| -|++++|.++|-+|-+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh
Confidence 47778888877777777777777777766543 111 0111223333 378888888888875543
No 229
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.01 E-value=2.5 Score=33.58 Aligned_cols=137 Identities=12% Similarity=0.109 Sum_probs=95.1
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHhC
Q 048117 66 LTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG--FLQEAYEFIRNM 143 (352)
Q Consensus 66 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m 143 (352)
++..+.+.+.|++|+...+..+++.+.+.|+...-.++ . .+++-+|.......+-.+.... -..-|+++++++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----l-q~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----L-QYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----H-hhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 45667777889999999999999999999998765554 4 3577777665555554343322 244567777776
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Q 048117 144 PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVK 215 (352)
Q Consensus 144 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 215 (352)
+. .+..++..+...|++-+|.++.....+... .....++.+-.+.++...-..+|+-..+++.+
T Consensus 89 ~~-----~~~~iievLL~~g~vl~ALr~ar~~~~~~~---~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n~~ 152 (167)
T PF07035_consen 89 GT-----AYEEIIEVLLSKGQVLEALRYARQYHKVDS---VPARKFLEAAANSNDDQLFYAVFRFFEERNLR 152 (167)
T ss_pred hh-----hHHHHHHHHHhCCCHHHHHHHHHHcCCccc---CCHHHHHHHHHHcCCHHHHHHHHHHHHHhhHh
Confidence 52 455678889999999999998877543222 23345667777888888777888777776543
No 230
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=93.94 E-value=5.7 Score=37.44 Aligned_cols=160 Identities=12% Similarity=0.066 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHH
Q 048117 47 FTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKP-NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125 (352)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~ 125 (352)
.+|...|+.--+..-++.|..+|.+..+.+..+ +....+++|.-+| .++.+-|.++|+.=.+++|- +..--...++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHH
Confidence 567778888888878999999999999988888 5667777776655 57888999999876655442 2344467888
Q ss_pred HHHhcCCHHHHHHHHHhC--C-CCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCcchHHHHHHHHHHc
Q 048117 126 LLSRAGFLQEAYEFIRNM--P-IKP--NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP----LNNGYHVVLSNIYAEA 196 (352)
Q Consensus 126 ~~~~~g~~~~A~~~~~~m--~-~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~ 196 (352)
-+...++=..|..+|++. . ..| ....|..+|.--..-|++..+.++-++....-| ........+++.|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 888999988999999988 1 222 346899999999999999999998888765333 1123445677778776
Q ss_pred cCHHHHHHHHHHH
Q 048117 197 ERWEDVARVRKLM 209 (352)
Q Consensus 197 g~~~~a~~~~~~m 209 (352)
+...--..-++.|
T Consensus 524 d~~~c~~~elk~l 536 (656)
T KOG1914|consen 524 DLYPCSLDELKFL 536 (656)
T ss_pred ccccccHHHHHhh
Confidence 6665444444443
No 231
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.91 E-value=1.8 Score=38.10 Aligned_cols=131 Identities=12% Similarity=0.163 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhc--cC----CHHHHHHHHHHhHHhcCC--CC
Q 048117 46 VFTWSAMIQGLAI--HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH--MG----WVDEGRRFFYSMTTEYGI--IP 115 (352)
Q Consensus 46 ~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~g----~~~~a~~~~~~m~~~~g~--~~ 115 (352)
..++.+++..... ...+++.+.+++.|.+.|++-+..+|.+..-.... .. ....+..+|+.|++++.. .+
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~ 139 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP 139 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCc
Confidence 3444444444333 11255677888899999999998888764433333 22 356788999999977554 34
Q ss_pred ChhhHHHHHHHHHhcCCHH----HHHHHHHhC---CCCC-CcchHHHHHHHHHhcCC---HHHHHHHHHHHHhc
Q 048117 116 QIEHYGCMVDLLSRAGFLQ----EAYEFIRNM---PIKP-NGVVWGALLGGCRVHKN---IDLAEEASRQLDQL 178 (352)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~----~A~~~~~~m---~~~p-~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~ 178 (352)
+-.++.+|+.. ...+++ .+...++.+ +... |..-+-+-+-++..... +.++..+++.+.+.
T Consensus 140 ~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~ 211 (297)
T PF13170_consen 140 EDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN 211 (297)
T ss_pred cchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc
Confidence 45566666654 444443 344444444 4333 22223333333322222 23566666666653
No 232
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.90 E-value=1.8 Score=38.12 Aligned_cols=150 Identities=10% Similarity=-0.041 Sum_probs=104.2
Q ss_pred HcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHH----HHHHHHhcCCH
Q 048117 58 IHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC----MVDLLSRAGFL 133 (352)
Q Consensus 58 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~----li~~~~~~g~~ 133 (352)
-+|+..+|...++++.+. .+.|...+.-.=.+|.-.|+.+.-...++.+.. .-.||...|.- +.-++-.+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 468888888999998875 677888888888999999999998888888874 33455444433 33344579999
Q ss_pred HHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----cchHHHHHHHHHHccCHHHHHHHHH
Q 048117 134 QEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN----NGYHVVLSNIYAEAERWEDVARVRK 207 (352)
Q Consensus 134 ~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 207 (352)
++|.+.-++. .++| |.-.-.++...+-..|+..++.++..+-...-... ...|--..-.+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998887 5554 55555667777788899999988876654311110 0111112223556699999999997
Q ss_pred HHH
Q 048117 208 LMR 210 (352)
Q Consensus 208 ~m~ 210 (352)
.=.
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 543
No 233
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.78 E-value=0.78 Score=39.68 Aligned_cols=69 Identities=13% Similarity=0.313 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCccHHHHH
Q 048117 17 VCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIE-----IGIKPNGVTFI 85 (352)
Q Consensus 17 ~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~ 85 (352)
++..++..+..+|+.+.+...++..... |...|..+|.+|.+.|+...|+..|+++.. .|+.|...+-.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3444555555555555555555554432 445555555555555555555555555532 34455444433
No 234
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.74 E-value=1.2 Score=39.30 Aligned_cols=120 Identities=15% Similarity=0.290 Sum_probs=76.4
Q ss_pred hHhHHHHhCCCCCHhHHHHHHHHHHH--cC----CHHHHHHHHHhcccC-------CHHHHHHHHHHHHHcCC----HHH
Q 048117 2 VHEYSNQSGFRRNIRVCNTLIDMYVK--CG----CLEGARRVFIEMEER-------TVFTWSAMIQGLAIHGQ----AKE 64 (352)
Q Consensus 2 i~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g~----~~~ 64 (352)
+++.+.+.|+..+.++|-+..-.... .. ...+|..+|+.|++. +-.++.+|+.. ...+ .+.
T Consensus 84 ~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~ 161 (297)
T PF13170_consen 84 IYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAER 161 (297)
T ss_pred HHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHH
Confidence 57788889998888777764444433 22 356788999999863 45667777655 2222 456
Q ss_pred HHHHHHHHHHcCCCccHH-HHHHHHHHHhccC-C--HHHHHHHHHHhHHhcCCCCChhhHHHHH
Q 048117 65 ALTSFNKMIEIGIKPNGV-TFIGLLHACGHMG-W--VDEGRRFFYSMTTEYGIIPQIEHYGCMV 124 (352)
Q Consensus 65 A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g-~--~~~a~~~~~~m~~~~g~~~~~~~~~~li 124 (352)
+...|+.+...|+..+-. -+.+-+-+++... . ...+.++++.+.++ |+++...+|..+.
T Consensus 162 ~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 162 MEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHH
Confidence 777788888878766433 3333333443332 2 34677788888754 8888877766543
No 235
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.65 E-value=1.2 Score=38.09 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=25.1
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHhC
Q 048117 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQI-EHYGCMVDLLSRAGFLQEAYEFIRNM 143 (352)
Q Consensus 87 ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m 143 (352)
|..++...|+.++|..+|..+.++++-.|-. ...--|.....+.|+.++|..+|++.
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4444444455555555444444433332221 33333444444444444444444444
No 236
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.47 E-value=1.5 Score=40.89 Aligned_cols=135 Identities=18% Similarity=0.206 Sum_probs=90.2
Q ss_pred HHHHHcCCHHHHHHHHHH-HHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCC
Q 048117 54 QGLAIHGQAKEALTSFNK-MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGF 132 (352)
Q Consensus 54 ~~~~~~g~~~~A~~l~~~-m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~ 132 (352)
.....+|+++++.++... -.-..++ ..-.+.++.-+-+.|..+.|+++...-.. -.+...++|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCC
Confidence 344567888887777751 1111232 33477888889999999999986544332 2344568999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 133 LQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 133 ~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
++.|.++.++.. +...|..|-....+.|+++.|++.+.+.. -+..|+-.|...|+.+.-.++-+....+
T Consensus 334 L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999999887765 67799999999999999999999998853 3445566688899998888887777666
Q ss_pred CC
Q 048117 213 GV 214 (352)
Q Consensus 213 g~ 214 (352)
|-
T Consensus 403 ~~ 404 (443)
T PF04053_consen 403 GD 404 (443)
T ss_dssp T-
T ss_pred cC
Confidence 54
No 237
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=0.71 Score=42.94 Aligned_cols=102 Identities=17% Similarity=0.118 Sum_probs=77.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhhHHHHHHHHHhcCC
Q 048117 54 QGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGF 132 (352)
Q Consensus 54 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li~~~~~~g~ 132 (352)
++.+..|+++.|+.+|.+..... ++|.+.|+.=..+|...|++++|.+=-..-+ .+.|+ ..-|+-+-.++.-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~---~l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTR---RLNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHH---hcCCchhhHHHHhHHHHHhccc
Confidence 56677899999999999987753 4588889999999999999988876444333 56676 4678888888888899
Q ss_pred HHHHHHHHHhC-CCCC-CcchHHHHHHHH
Q 048117 133 LQEAYEFIRNM-PIKP-NGVVWGALLGGC 159 (352)
Q Consensus 133 ~~~A~~~~~~m-~~~p-~~~~~~~li~~~ 159 (352)
+++|..-|.+- ...| |...++.+..++
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99999888875 4455 444555565555
No 238
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.40 E-value=0.85 Score=38.91 Aligned_cols=91 Identities=13% Similarity=0.075 Sum_probs=70.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHH
Q 048117 119 HYGCMVDLLSRAGFLQEAYEFIRNM-------PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN---GYHVV 188 (352)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~ 188 (352)
.|+.-++. .+.|++.+|...|..- ...|| .+-.|..++...|+.+.|...|..+.+..|..+ ....-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~n--A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPN--AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccch--hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 58877765 5778899999988877 12233 344588999999999999999999888555443 45556
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhc
Q 048117 189 LSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 189 l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
|.....+.|+.++|..+|++..++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 667788999999999999998875
No 239
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.14 E-value=9.6 Score=37.90 Aligned_cols=144 Identities=15% Similarity=0.143 Sum_probs=83.8
Q ss_pred HHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHH----HHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCH
Q 048117 22 IDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQG----LAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWV 97 (352)
Q Consensus 22 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~----~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 97 (352)
+++..+...+..|..+-+.-. -|..+-..+... +.+.|++++|...|-+-... +.|.. +|.-|-.+.++
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~-----Vi~kfLdaq~I 413 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQH-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE-----VIKKFLDAQRI 413 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-----HHHHhcCHHHH
Confidence 333444444444444433222 133333334433 34578888888888776533 33333 45555666666
Q ss_pred HHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHH
Q 048117 98 DEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGV-VWGALLGGCRVHKNIDLAEEASRQL 175 (352)
Q Consensus 98 ~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~ 175 (352)
.+--.+++.+.++ |+. +..+-+.|+++|.+.++.++-.++.+.-. +-... -....+..|.+.+-.++|..+....
T Consensus 414 knLt~YLe~L~~~-gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 414 KNLTSYLEALHKK-GLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHc-ccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 6666677777743 554 55667788888888888888887777664 11111 2456677777777777766655443
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.12 E-value=7.6 Score=36.33 Aligned_cols=79 Identities=14% Similarity=0.244 Sum_probs=54.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCC--cchHHHHHHHHHh
Q 048117 86 GLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP-I-KPN--GVVWGALLGGCRV 161 (352)
Q Consensus 86 ~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~--~~~~~~li~~~~~ 161 (352)
.+-.++-+.|+.++|.+.+.+|.+++....+..+...|+..|...+.+.++..++.+.. + -|. ...|+..+--+..
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 35566677899999999999998654322334577788899999999999999888873 2 133 3457766654444
Q ss_pred cCC
Q 048117 162 HKN 164 (352)
Q Consensus 162 ~g~ 164 (352)
.++
T Consensus 344 v~d 346 (539)
T PF04184_consen 344 VGD 346 (539)
T ss_pred hcc
Confidence 433
No 241
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.11 E-value=6.5 Score=35.57 Aligned_cols=194 Identities=14% Similarity=0.127 Sum_probs=122.4
Q ss_pred HHHHHHHHH--HcCCHHHHHHHHHhcc---cCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCccHH--HHHHHH
Q 048117 18 CNTLIDMYV--KCGCLEGARRVFIEME---ERTVFTWSAMIQGLA--IHGQAKEALTSFNKMIEIGIKPNGV--TFIGLL 88 (352)
Q Consensus 18 ~~~li~~~~--~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll 88 (352)
|.+|-.++. -.||-..|+++-.+.. ..|....-.++.+-. -.|+++.|.+-|+.|... |... -...|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence 444544443 3577777777766554 236555555655543 369999999999999753 3332 244555
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCcch--HHHHHHHH--
Q 048117 89 HACGHMGWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGFLQEAYEFIRNM----PIKPNGVV--WGALLGGC-- 159 (352)
Q Consensus 89 ~a~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~--~~~li~~~-- 159 (352)
-.--+.|..+.|.++-+... +..|. .-.+.+.+...+..|+++.|+++++.- -+.++..- =..|+.+-
T Consensus 162 leAqr~GareaAr~yAe~Aa---~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 162 LEAQRLGAREAARHYAERAA---EKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHhcccHHHHHHHHHHHH---hhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 55567788888888766654 44555 346778889999999999999998776 23333221 12233221
Q ss_pred -HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccC
Q 048117 160 -RVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKT 217 (352)
Q Consensus 160 -~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 217 (352)
.-..+...|...-.+..++.|+-......-..++.+-|+..++-++++.+-+..-.|+
T Consensus 239 s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 239 SLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred HHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH
Confidence 1123455666666666666666554555556777788888888888887766655444
No 242
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.01 E-value=0.56 Score=40.80 Aligned_cols=99 Identities=15% Similarity=0.250 Sum_probs=71.9
Q ss_pred HhCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhccc-C--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 048117 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE-R--------TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK 78 (352)
Q Consensus 8 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 78 (352)
..|......+...++..-....+++++...+-+.+. | ..++|--++.- =++++++.++..=.+.|+-
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk----y~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK----YDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc----cChHHHHHHHhCcchhccc
Confidence 346666677777777777777788888777666653 2 23444333332 3577888888888888999
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 048117 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE 110 (352)
Q Consensus 79 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 110 (352)
||..|++.+|+.+.+.+++.+|.++.-.|...
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999988888887777643
No 243
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.72 E-value=1.5 Score=33.15 Aligned_cols=90 Identities=16% Similarity=0.103 Sum_probs=59.1
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCcchH---HHHHHHHHHccCH
Q 048117 126 LLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQ-LDPLNNGYH---VVLSNIYAEAERW 199 (352)
Q Consensus 126 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~---~~l~~~~~~~g~~ 199 (352)
+++..|+++.|++.|.+. .+-| ....||.=..++.-.|+.++|..=+++..+ .++...+.. ..--..|-..|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 456778888888888776 3333 455677777888888888888777777766 333322222 2222346777888
Q ss_pred HHHHHHHHHHHhcCCc
Q 048117 200 EDVARVRKLMRNLGVK 215 (352)
Q Consensus 200 ~~a~~~~~~m~~~g~~ 215 (352)
+.|+.=|....+.|-+
T Consensus 132 d~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 132 DAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHhHHHHHHhCCH
Confidence 8888888877776654
No 244
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.51 E-value=8.1 Score=35.10 Aligned_cols=161 Identities=16% Similarity=0.068 Sum_probs=104.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccC---C----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 048117 19 NTLIDMYVKCGCLEGARRVFIEMEER---T----VFTWSAMIQGLAI---HGQAKEALTSFNKMIEIGIKPNGVTFIGLL 88 (352)
Q Consensus 19 ~~li~~~~~~g~~~~A~~~f~~m~~~---~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 88 (352)
..|+-.|....+++...++++.++.. + ...--....++.+ .|+.++|++++.......-.+++.||..+-
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555688999999999999999864 1 1222233445555 789999999999977666778888988777
Q ss_pred HHHhcc---------CCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHH----HHHHHH---HhC----C---C
Q 048117 89 HACGHM---------GWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ----EAYEFI---RNM----P---I 145 (352)
Q Consensus 89 ~a~~~~---------g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~----~A~~~~---~~m----~---~ 145 (352)
..|-.. ..+++|...|.. .+.+.||..+--.++..+...|.-. +..++- ..+ + -
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~k---gFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRK---GFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHH---HHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 776422 235666666553 2345565443333333344444322 233333 111 1 1
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048117 146 KPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182 (352)
Q Consensus 146 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 182 (352)
..|--.+.+++.++.-.|+.++|.+..+.+.+..|+.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 2355567789999999999999999999999876653
No 245
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.50 E-value=3.2 Score=33.45 Aligned_cols=95 Identities=11% Similarity=0.129 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh------h
Q 048117 47 FTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGV--TFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI------E 118 (352)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~------~ 118 (352)
..+..+..-|++.|+.++|++.|.++.+....|... .+-.+|..+...+++..+.........-..-..|. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 567788888888888888888888888776666554 45677777788888887777766555321111122 2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC
Q 048117 119 HYGCMVDLLSRAGFLQEAYEFIRNM 143 (352)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~~~~~m 143 (352)
+|..|.. ...+++.+|-+.|-+.
T Consensus 117 ~~~gL~~--l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLAN--LAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHH--HHhchHHHHHHHHHcc
Confidence 3333332 2467888888888776
No 246
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.46 E-value=0.77 Score=39.72 Aligned_cols=61 Identities=18% Similarity=0.167 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 151 VWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 151 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
++..++..+...|+.+.+...++++....|-+...|..++.+|.+.|+...|...|+.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 5556777788888888888888888888888888888899999999999999998888765
No 247
>PRK15331 chaperone protein SicA; Provisional
Probab=92.14 E-value=0.99 Score=35.57 Aligned_cols=87 Identities=13% Similarity=-0.033 Sum_probs=50.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCH
Q 048117 54 QGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133 (352)
Q Consensus 54 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~ 133 (352)
.-+.+.|++++|..+|+-+...+. -|..-+..|-.+|-..+.+++|...|..... .. .-|...+--....|...|+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-cCCCCccchHHHHHHHhCCH
Confidence 344567777777777777655321 1222334455555556777777777765542 12 22333344455566677777
Q ss_pred HHHHHHHHhC
Q 048117 134 QEAYEFIRNM 143 (352)
Q Consensus 134 ~~A~~~~~~m 143 (352)
+.|++.|...
T Consensus 122 ~~A~~~f~~a 131 (165)
T PRK15331 122 AKARQCFELV 131 (165)
T ss_pred HHHHHHHHHH
Confidence 7777777666
No 248
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.03 E-value=7.6 Score=33.74 Aligned_cols=132 Identities=11% Similarity=0.010 Sum_probs=91.2
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHH---H
Q 048117 79 PNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGA---L 155 (352)
Q Consensus 79 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~---l 155 (352)
+...++. -.......|+..++..+|+..... .+-+...--.|...|...|+.+.|..++..++.+....-|.. =
T Consensus 133 ~~e~~~~-~~~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~ 209 (304)
T COG3118 133 EEEEALA-EAKELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQ 209 (304)
T ss_pred HHHHHHH-HhhhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3344443 334567889999999999888753 233356677888999999999999999999965544444444 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 048117 156 LGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGV 214 (352)
Q Consensus 156 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 214 (352)
|..+.+.....+...+-... ...|++...-..|...|...|+.++|.+.+-.+.+++.
T Consensus 210 i~ll~qaa~~~~~~~l~~~~-aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 210 IELLEQAAATPEIQDLQRRL-AADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred HHHHHHHhcCCCHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 33344444444444443333 25787777888899999999999999998877766543
No 249
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.00 E-value=2.1 Score=41.68 Aligned_cols=115 Identities=12% Similarity=0.123 Sum_probs=86.9
Q ss_pred CCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHH
Q 048117 76 GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGAL 155 (352)
Q Consensus 76 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 155 (352)
|..-...|.+--+.-+...|+..+|.++-.+.+ .||...|-.=+.+++..+++++-+++-+.+. .+.-|...
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PF 750 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPF 750 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhH
Confidence 333444456666677778889888888776554 4788888888888999999998888887764 36778889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHH
Q 048117 156 LGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVR 206 (352)
Q Consensus 156 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 206 (352)
..+|.+.|+.++|.+++.+..... -...+|.++|++.+|.++-
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHH
Confidence 999999999999988876643221 3568899999999887763
No 250
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.92 E-value=1.3 Score=31.68 Aligned_cols=60 Identities=17% Similarity=0.245 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHH
Q 048117 64 EALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125 (352)
Q Consensus 64 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~ 125 (352)
+..+-++.+....+.|++....+.+.||.+.+++..|.++++.++.+.|.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 555556666677789999999999999999999999999999888665533 336776664
No 251
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.92 E-value=3.4 Score=33.30 Aligned_cols=94 Identities=15% Similarity=0.088 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhcccCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCccHHHHHH
Q 048117 16 RVCNTLIDMYVKCGCLEGARRVFIEMEERT------VFTWSAMIQGLAIHGQAKEALTSFNKMIE---IGIKPNGVTFIG 86 (352)
Q Consensus 16 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~~ 86 (352)
..+..+.+.|.+.|+.+.|.+.|..+.+.. +..+-.+|......+++..+.....+... .|-.++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 567889999999999999999999998752 35677888999999999999999888753 332233332222
Q ss_pred HHHH--HhccCCHHHHHHHHHHhHH
Q 048117 87 LLHA--CGHMGWVDEGRRFFYSMTT 109 (352)
Q Consensus 87 ll~a--~~~~g~~~~a~~~~~~m~~ 109 (352)
+..+ +...+++..|-+.|-+...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 2222 2346788888888766653
No 252
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.86 E-value=0.48 Score=26.75 Aligned_cols=26 Identities=8% Similarity=0.194 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048117 48 TWSAMIQGLAIHGQAKEALTSFNKMI 73 (352)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~l~~~m~ 73 (352)
+|+.|-..|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46667777777777777777777743
No 253
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.65 E-value=1.7 Score=30.83 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHH
Q 048117 61 QAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125 (352)
Q Consensus 61 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~ 125 (352)
+.-++.+-++.+....+.|++....+.+.||.+.+++..|.++++..+.+.|. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44466666777777788999999999999999999999999999988755443 4446766654
No 254
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.61 E-value=1.8 Score=33.29 Aligned_cols=68 Identities=13% Similarity=0.211 Sum_probs=41.5
Q ss_pred HHcCCHHHHHHHHHhcccC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhc
Q 048117 26 VKCGCLEGARRVFIEMEER------TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGH 93 (352)
Q Consensus 26 ~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 93 (352)
.+.|++++|.+.|+.+..+ ...+---++.+|.+.+++++|+..+++..+..-.--.+-|...+.+++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3467778888888777754 2344445677777788888888887777764322112334444444443
No 255
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=91.55 E-value=2.7 Score=32.43 Aligned_cols=46 Identities=11% Similarity=0.157 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhHHhcCCCCChhhHHHHHHHH
Q 048117 81 GVTFIGLLHACGHMGW-VDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127 (352)
Q Consensus 81 ~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~ 127 (352)
..+|.+++.+.++... ---+..+|..|++ .+.+++..-|..||.+.
T Consensus 79 ~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~-~~~~~t~~dy~~li~~~ 125 (145)
T PF13762_consen 79 NSSFHIIFKSLSNSSSAKLTSLTLFNFLKK-NDIEFTPSDYSCLIKAA 125 (145)
T ss_pred cchHHHHHHHHccChHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Confidence 3345555555544444 3334444554443 34455555555555543
No 256
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.35 E-value=4.8 Score=30.49 Aligned_cols=87 Identities=15% Similarity=0.014 Sum_probs=41.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hhhHHHHHHHHHhcCC
Q 048117 55 GLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ--IEHYGCMVDLLSRAGF 132 (352)
Q Consensus 55 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~--~~~~~~li~~~~~~g~ 132 (352)
+++..|+.+.|++.|.+...- .+-+...||.-..++.-.|+.++|..=+++...-.|-... ...|.--...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 345556666666666655542 2234455666666666666666665555554432222211 1112222223445555
Q ss_pred HHHHHHHHHh
Q 048117 133 LQEAYEFIRN 142 (352)
Q Consensus 133 ~~~A~~~~~~ 142 (352)
-|.|..=|+.
T Consensus 131 dd~AR~DFe~ 140 (175)
T KOG4555|consen 131 DDAARADFEA 140 (175)
T ss_pred hHHHHHhHHH
Confidence 5555555443
No 257
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.21 E-value=4 Score=35.36 Aligned_cols=125 Identities=14% Similarity=0.067 Sum_probs=78.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHh-cCC----HHHHHHHHHh-CCCCCCcchHHHHHH
Q 048117 84 FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR-AGF----LQEAYEFIRN-MPIKPNGVVWGALLG 157 (352)
Q Consensus 84 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~-~g~----~~~A~~~~~~-m~~~p~~~~~~~li~ 157 (352)
|..++. +...+.+|.++|+....+..+--|..+-..|++.... .+. +-|..+.+.. -+..++..+...+|.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555553 3445677777777433212355566666666666554 221 2222222221 144567777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhc-CC-CCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Q 048117 158 GCRVHKNIDLAEEASRQLDQL-DP-LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVK 215 (352)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 215 (352)
.++..+++.+-.+++...... .| .+...+..+++.-.+.|+.. +.+.+...|.-
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~----~~~kiI~~GhL 266 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE----VMRKIIDDGHL 266 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHH----HHHHHhhCCCe
Confidence 889999998888888876653 33 56678888888888888876 44555666654
No 258
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.12 E-value=8.8 Score=32.66 Aligned_cols=158 Identities=14% Similarity=0.050 Sum_probs=106.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC-C-CccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhc-
Q 048117 54 QGLAIHGQAKEALTSFNKMIEIG-I-KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA- 130 (352)
Q Consensus 54 ~~~~~~g~~~~A~~l~~~m~~~g-~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~- 130 (352)
..-.+.|++++|.+.|+.+...- . +-...+...++.++-+.++.++|....++..+.++-.||.. |.--|.+++.-
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~~ 120 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYFF 120 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhc
Confidence 34457899999999999997542 1 12355677788888899999999999999997777777753 55555555432
Q ss_pred ------CCHHHHHHHHHhC-------C---CCCCcchHH------------HHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048117 131 ------GFLQEAYEFIRNM-------P---IKPNGVVWG------------ALLGGCRVHKNIDLAEEASRQLDQLDPLN 182 (352)
Q Consensus 131 ------g~~~~A~~~~~~m-------~---~~p~~~~~~------------~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 182 (352)
.+...+.+.|..+ | ..||...=- .+.+-|.+.|.+..|..-++++.+.-|+.
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t 200 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT 200 (254)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc
Confidence 2333344444444 1 112222111 22334788899999999999998865554
Q ss_pred cch---HHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 183 NGY---HVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 183 ~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
..+ ...+..+|...|..++|.+.-+-+...
T Consensus 201 ~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 201 SAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred cchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 443 346778999999999999887776654
No 259
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.09 E-value=0.25 Score=38.16 Aligned_cols=84 Identities=13% Similarity=0.130 Sum_probs=43.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcC
Q 048117 52 MIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG 131 (352)
Q Consensus 52 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g 131 (352)
+|..+.+.+.+.....+++.+...+...+....+.++..|++.+..+....+++... + .-...++..+-+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~-----yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---N-----YDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---S-----S-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---c-----cCHHHHHHHHHhcc
Confidence 344555566666666666666655544556666666677776666555555443111 1 11223444445555
Q ss_pred CHHHHHHHHHhC
Q 048117 132 FLQEAYEFIRNM 143 (352)
Q Consensus 132 ~~~~A~~~~~~m 143 (352)
.+++|.-++.++
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 555555555555
No 260
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.85 E-value=5.4 Score=31.83 Aligned_cols=131 Identities=16% Similarity=0.116 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHH-HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChh-hHHH
Q 048117 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVT-FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE-HYGC 122 (352)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~-~~~~ 122 (352)
....|.+-+.. ++.+..++|+.-|.++.+.|...-++. ---+-....+.|+...|...|+++-.. .-.|-.. -..-
T Consensus 58 sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLAR 135 (221)
T ss_pred chHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHH
Confidence 34455555443 456677888888888877665433321 112233456778888888888887744 2233222 1122
Q ss_pred HHH--HHHhcCCHHHHHHHHHhCC--CCCCcch-HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048117 123 MVD--LLSRAGFLQEAYEFIRNMP--IKPNGVV-WGALLGGCRVHKNIDLAEEASRQLDQ 177 (352)
Q Consensus 123 li~--~~~~~g~~~~A~~~~~~m~--~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~ 177 (352)
|=. .+...|.+++...-.+.+. -.|-.++ =.+|--+-.+.|++..|...|..+..
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 222 2346778888777777772 1221111 22444555678888888888887765
No 261
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.55 E-value=4.4 Score=31.17 Aligned_cols=21 Identities=14% Similarity=0.040 Sum_probs=9.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHh
Q 048117 122 CMVDLLSRAGFLQEAYEFIRN 142 (352)
Q Consensus 122 ~li~~~~~~g~~~~A~~~~~~ 142 (352)
.|+.+|.+.+++++|...+++
T Consensus 52 ~l~yayy~~~~y~~A~a~~~r 72 (142)
T PF13512_consen 52 DLAYAYYKQGDYEEAIAAYDR 72 (142)
T ss_pred HHHHHHHHccCHHHHHHHHHH
Confidence 344444444444444444333
No 262
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.46 E-value=7.3 Score=30.64 Aligned_cols=110 Identities=13% Similarity=0.099 Sum_probs=62.1
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCcchHHHHHHHHHhcC
Q 048117 88 LHACGHMGWVDEGRRFFYSMTTEYGIIPQ---IEHYGCMVDLLSRAGFLQEAYEFIRNMPIK-PNGVVWGALLGGCRVHK 163 (352)
Q Consensus 88 l~a~~~~g~~~~a~~~~~~m~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~li~~~~~~g 163 (352)
+..-.+.++.+++..++..+. -+.|. ..++-.++ +.+.|++++|.++|+++.-. |....-.+|+..|....
T Consensus 17 ~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 334456678899999988887 34555 34444444 56889999999999999333 44444455555555443
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHH
Q 048117 164 NIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVAR 204 (352)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 204 (352)
.-..=...-+++...+++. ....|+..+....+...|..
T Consensus 92 ~D~~Wr~~A~evle~~~d~--~a~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 92 GDPSWRRYADEVLESGADP--DARALVRALLARADLEPAHE 130 (160)
T ss_pred CChHHHHHHHHHHhcCCCh--HHHHHHHHHHHhccccchhh
Confidence 3332233333344444332 23345555555555444443
No 263
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.17 E-value=5 Score=30.44 Aligned_cols=58 Identities=12% Similarity=0.173 Sum_probs=25.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 048117 50 SAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMT 108 (352)
Q Consensus 50 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 108 (352)
+..++.+.++|+-+.-.+++.++.+ +-.|++.....+..||.+.|+..++.+++.+..
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3444455555555555555555433 223444444455555555555555555555444
No 264
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=89.59 E-value=8.9 Score=37.07 Aligned_cols=118 Identities=14% Similarity=0.175 Sum_probs=75.2
Q ss_pred CCCCHhHHHHHHHHHHHcCCHHHHHHHH---------H--hcccCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCC
Q 048117 11 FRRNIRVCNTLIDMYVKCGCLEGARRVF---------I--EMEERTVFTWSAMIQGLAIHGQ--AKEALTSFNKMIEIGI 77 (352)
Q Consensus 11 ~~~~~~~~~~li~~~~~~g~~~~A~~~f---------~--~m~~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~ 77 (352)
+.|-.+.+.+=+..|...|.+++|.++- + .|...+.-.++..=.+|.+..+ +-+-+.-+++|++.|-
T Consensus 552 i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 552 ISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred eecccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 3455566666777788888888876541 1 1112245566677777877665 3355556778888999
Q ss_pred CccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 048117 78 KPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIR 141 (352)
Q Consensus 78 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 141 (352)
.|+.... ...|+-.|.+.+|-++|.+ .|.+ |.-+.+|.....+|.|.+++.
T Consensus 632 ~P~~iLl---A~~~Ay~gKF~EAAklFk~----~G~e------nRAlEmyTDlRMFD~aQE~~~ 682 (1081)
T KOG1538|consen 632 TPNDLLL---ADVFAYQGKFHEAAKLFKR----SGHE------NRALEMYTDLRMFDYAQEFLG 682 (1081)
T ss_pred CchHHHH---HHHHHhhhhHHHHHHHHHH----cCch------hhHHHHHHHHHHHHHHHHHhh
Confidence 9998764 4456677888888888763 3433 334455655566666665553
No 265
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.18 E-value=1.1 Score=24.50 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048117 47 FTWSAMIQGLAIHGQAKEALTSFNKMIE 74 (352)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 74 (352)
.+|..+...|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4577777777778888888888877765
No 266
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.03 E-value=8.6 Score=35.07 Aligned_cols=152 Identities=15% Similarity=0.084 Sum_probs=94.8
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH--HhccCCHHHHHHHHHHhHHhcCCCCChhh-------------H
Q 048117 56 LAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA--CGHMGWVDEGRRFFYSMTTEYGIIPQIEH-------------Y 120 (352)
Q Consensus 56 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~~~g~~~~a~~~~~~m~~~~g~~~~~~~-------------~ 120 (352)
+...|+.++|.+.--...+..- .+ .+..++.+ +--.++.+.+...|++-. .+.|+-.. +
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~-~n--~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDA-TN--AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhcccchhHHHHHHHHHhccc-ch--hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHH
Confidence 3445666666666555443211 11 12222222 223456677777776554 33444221 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCC-----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 048117 121 GCMVDLLSRAGFLQEAYEFIRNM-PIK-----PNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYA 194 (352)
Q Consensus 121 ~~li~~~~~~g~~~~A~~~~~~m-~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (352)
.-=-+...+.|++.+|.+.+.+. .+. |+...|-.......+.|+.++|..-.++..++++.-...+..-..++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 22233456789999999999887 444 445556666667788999999999998888877654445555566778
Q ss_pred HccCHHHHHHHHHHHHhcC
Q 048117 195 EAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 195 ~~g~~~~a~~~~~~m~~~g 213 (352)
..++|++|.+-|+...+..
T Consensus 333 ~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 8899999999998876543
No 267
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.93 E-value=9.4 Score=34.62 Aligned_cols=85 Identities=19% Similarity=0.112 Sum_probs=45.1
Q ss_pred HHHHHcCCHHHHHHHHHhcccC------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHH
Q 048117 23 DMYVKCGCLEGARRVFIEMEER------------------TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTF 84 (352)
Q Consensus 23 ~~~~~~g~~~~A~~~f~~m~~~------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 84 (352)
+.|.+.|++..|..-|+....- -+.+++.+.-++.+.+++.+|+..-++.+..+ ++|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 3567778888887777664310 12344455555555555555555555554432 2344444
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhH
Q 048117 85 IGLLHACGHMGWVDEGRRFFYSMT 108 (352)
Q Consensus 85 ~~ll~a~~~~g~~~~a~~~~~~m~ 108 (352)
----.||...|+++.|...|+.+.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~ 318 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKAL 318 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHH
Confidence 344445555555555555555444
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.84 E-value=0.9 Score=25.57 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhc
Q 048117 17 VCNTLIDMYVKCGCLEGARRVFIEM 41 (352)
Q Consensus 17 ~~~~li~~~~~~g~~~~A~~~f~~m 41 (352)
+++.|-+.|.+.|++++|.++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4788999999999999999999973
No 269
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.81 E-value=2.2 Score=37.26 Aligned_cols=96 Identities=10% Similarity=0.080 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHH
Q 048117 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEI---GIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYG 121 (352)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~ 121 (352)
.+.+-..++..-.+..+++.+..++-+++.. ...|+...+. ++..| -.-+.+++..+...=+ .+|+-||..+++
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~-~irll-lky~pq~~i~~l~npI-qYGiF~dqf~~c 139 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT-WIRLL-LKYDPQKAIYTLVNPI-QYGIFPDQFTFC 139 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHH-HHHHH-HccChHHHHHHHhCcc-hhccccchhhHH
Confidence 4455666666666678899999988888642 2344433332 22222 2346678888777666 589999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC
Q 048117 122 CMVDLLSRAGFLQEAYEFIRNM 143 (352)
Q Consensus 122 ~li~~~~~~g~~~~A~~~~~~m 143 (352)
.||+.+.+.+++.+|.++...|
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHH
Confidence 9999999999999998887776
No 270
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.37 E-value=3.2 Score=32.64 Aligned_cols=53 Identities=19% Similarity=0.110 Sum_probs=25.9
Q ss_pred hcCCHHHHHHHHHhC-CCCCCcchHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCC
Q 048117 129 RAGFLQEAYEFIRNM-PIKPNGVVWGALL-GGCRVHKNIDLAEEASRQLDQLDPL 181 (352)
Q Consensus 129 ~~g~~~~A~~~~~~m-~~~p~~~~~~~li-~~~~~~g~~~~a~~~~~~~~~~~~~ 181 (352)
+.++.+++..++..+ -.+|.......+- ..+.+.|++.+|.++++.+....|.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~ 76 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPG 76 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 455666666666655 2233332222211 2245556666666666665554443
No 271
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.33 E-value=0.82 Score=25.11 Aligned_cols=31 Identities=19% Similarity=0.051 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 048117 151 VWGALLGGCRVHKNIDLAEEASRQLDQLDPL 181 (352)
Q Consensus 151 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 181 (352)
+|..+-..|...|++++|...|++..+..|.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4566666666667777777766666665553
No 272
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.45 E-value=1.4 Score=23.94 Aligned_cols=30 Identities=27% Similarity=0.150 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 048117 152 WGALLGGCRVHKNIDLAEEASRQLDQLDPL 181 (352)
Q Consensus 152 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 181 (352)
|..+-..+...|++++|.+.+++..+..|+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 444555566666666666666666555553
No 273
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=87.25 E-value=13 Score=35.23 Aligned_cols=127 Identities=20% Similarity=0.158 Sum_probs=86.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-----hhhHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCCcchHHHH
Q 048117 86 GLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ-----IEHYGCMVDLLSR----AGFLQEAYEFIRNM-PIKPNGVVWGAL 155 (352)
Q Consensus 86 ~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~~~~~l 155 (352)
.+++..+-.|+-+.|.+.+....+..++... .-.|...+..++- ....+.|.++++.+ ..-|+...|...
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~ 272 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFF 272 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 3566667789999999999887654344322 1234444443332 45788899999999 445887777654
Q ss_pred H-HHHHhcCCHHHHHHHHHHHHhcC----CCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 156 L-GGCRVHKNIDLAEEASRQLDQLD----PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 156 i-~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
- +.+...|++++|.+.++...... ......+.-+.-.+.-..+|++|.+.|..+.+.
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 4 34677899999999999755311 111122334555678899999999999999874
No 274
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.07 E-value=3.5 Score=31.94 Aligned_cols=19 Identities=26% Similarity=0.118 Sum_probs=9.8
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 048117 160 RVHKNIDLAEEASRQLDQL 178 (352)
Q Consensus 160 ~~~g~~~~a~~~~~~~~~~ 178 (352)
.+.|++++|.++|+.+.+.
T Consensus 55 i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 55 IARGNYDEAARILRELLSS 73 (153)
T ss_pred HHcCCHHHHHHHHHhhhcc
Confidence 4455555555555555443
No 275
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.73 E-value=0.3 Score=37.71 Aligned_cols=84 Identities=13% Similarity=0.109 Sum_probs=62.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHH
Q 048117 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNID 166 (352)
Q Consensus 87 ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~ 166 (352)
+++.+.+.+.++....+++.+..+ +...+....+.|+..|++.+..++..++++... ..-...++..|.+.|.++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~----~yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN----NYDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS----SS-CTHHHHHHHTTTSHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHHHccccc----ccCHHHHHHHHHhcchHH
Confidence 677788888888888888888854 555678899999999999988888888887442 244456778888888887
Q ss_pred HHHHHHHHH
Q 048117 167 LAEEASRQL 175 (352)
Q Consensus 167 ~a~~~~~~~ 175 (352)
.+..++.++
T Consensus 88 ~a~~Ly~~~ 96 (143)
T PF00637_consen 88 EAVYLYSKL 96 (143)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHc
Confidence 777776654
No 276
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.55 E-value=2.1 Score=24.45 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048117 47 FTWSAMIQGLAIHGQAKEALTSFNKMI 73 (352)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~l~~~m~ 73 (352)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 466777777777777777777777764
No 277
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=86.50 E-value=3.1 Score=24.50 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048117 49 WSAMIQGLAIHGQAKEALTSFNKMIE 74 (352)
Q Consensus 49 ~~~li~~~~~~g~~~~A~~l~~~m~~ 74 (352)
|..+-..|...|++++|.++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555555555555554
No 278
>PRK11906 transcriptional regulator; Provisional
Probab=86.49 E-value=28 Score=32.47 Aligned_cols=76 Identities=14% Similarity=0.056 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHH
Q 048117 63 KEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGFLQEAYEFIR 141 (352)
Q Consensus 63 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 141 (352)
.+|.++-++..+.+ +-|......+-.+....++++.|..+|++.. .+.|| ..+|....-...-+|+.++|.+.++
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444444332 2244444444444444455555555555444 33343 2233333333334555555555555
Q ss_pred h
Q 048117 142 N 142 (352)
Q Consensus 142 ~ 142 (352)
+
T Consensus 397 ~ 397 (458)
T PRK11906 397 K 397 (458)
T ss_pred H
Confidence 5
No 279
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.40 E-value=11 Score=36.05 Aligned_cols=148 Identities=16% Similarity=0.029 Sum_probs=104.4
Q ss_pred HcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHH-HHHHHHHHhccCCHHHHHHHHH
Q 048117 27 KCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVT-FIGLLHACGHMGWVDEGRRFFY 105 (352)
Q Consensus 27 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~ 105 (352)
-.|+++.|..++-.++++ .-+.+...+-+.|..++|+++- ||... |. ...+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s---------~D~d~rFe----lal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS---------TDPDQRFE----LALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC---------CChhhhhh----hhhhcCcHHHHHHHHH
Confidence 357888888877777633 3445666677788887776643 33332 32 2346799999988765
Q ss_pred HhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 048117 106 SMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGY 185 (352)
Q Consensus 106 ~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 185 (352)
+.. +..-|..|-++....|++..|.+.|.... -|..|+-.+...|+.+....+-...++.+..+. .
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~-A 727 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL-A 727 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch-H
Confidence 443 45679999999999999999999998653 466788888889988877777666665554432 2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHH
Q 048117 186 HVVLSNIYAEAERWEDVARVRKL 208 (352)
Q Consensus 186 ~~~l~~~~~~~g~~~~a~~~~~~ 208 (352)
-.+|...|+++++.+++.+
T Consensus 728 ----F~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 728 ----FLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ----HHHHHHcCCHHHHHHHHHh
Confidence 2346678999999888654
No 280
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=84.48 E-value=37 Score=32.03 Aligned_cols=58 Identities=19% Similarity=0.084 Sum_probs=34.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 155 LLGGCRVHKNIDLAEEASRQLDQLDPL--NNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 155 li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
+-.++.+.|+.++|.+.+.++.+..|. .......|+.++...+.+.++..++.+-.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 445556666677777666666654442 2233446666666677777776666665443
No 281
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=83.78 E-value=22 Score=28.96 Aligned_cols=60 Identities=12% Similarity=0.168 Sum_probs=42.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHh-------------cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 048117 85 IGLLHACGHMGWVDEGRRFFYSMTTE-------------YGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP 144 (352)
Q Consensus 85 ~~ll~a~~~~g~~~~a~~~~~~m~~~-------------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 144 (352)
.+++..|.+.-++.++.++++.|.+- -+..+.-...|.-...+.++|.+|.|+.++++-.
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLrese 208 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRESE 208 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhccc
Confidence 46777888888888888888777531 0122345566777777888888888888887763
No 282
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=83.52 E-value=33 Score=30.70 Aligned_cols=181 Identities=12% Similarity=0.072 Sum_probs=98.2
Q ss_pred HHHHHHcCCHHHHHHHHHhcccC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCc-cHHHHHHHHHHHhcc-
Q 048117 22 IDMYVKCGCLEGARRVFIEMEER--TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIG---IKP-NGVTFIGLLHACGHM- 94 (352)
Q Consensus 22 i~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p-~~~t~~~ll~a~~~~- 94 (352)
..+.-+.|+++...+........ +...|.++... ..|+.+++....+.....- ..+ ....|........+.
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq 82 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQ 82 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 34556778888877777666653 34445544444 6788888887777765421 110 111222222222222
Q ss_pred --CCHHHHHHHHHHh--------------HHh-cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHH
Q 048117 95 --GWVDEGRRFFYSM--------------TTE-YGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGVVWGALL 156 (352)
Q Consensus 95 --g~~~~a~~~~~~m--------------~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li 156 (352)
..++++.++.... ..+ ....++..++..++..-. .+|..+ .......+|..+.
T Consensus 83 ~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~---------~~l~~~~~~~~~~~~~l~~a 153 (352)
T PF02259_consen 83 QLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRR---------LVLSLILLPEELAETWLKFA 153 (352)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH---------HHHhcccchhHHHHHHHHHH
Confidence 2223333222111 000 022233333333332110 111111 1233566899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCC----CCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 157 GGCRVHKNIDLAEEASRQLDQLDP----LNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
..+.+.|+++.|...+..+.+..+ ..+.....-+...-..|+-.+|...++...+..
T Consensus 154 ~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 154 KLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999999999999999887431 123344445566678899999999998887733
No 283
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.51 E-value=3.4 Score=22.32 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048117 48 TWSAMIQGLAIHGQAKEALTSFNKMIE 74 (352)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 74 (352)
.|..+-..+.+.|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666667777777777777776654
No 284
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=83.25 E-value=19 Score=33.34 Aligned_cols=132 Identities=7% Similarity=0.023 Sum_probs=70.4
Q ss_pred HHcCCHHHHHHHHHhcccC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH--Hhcc
Q 048117 26 VKCGCLEGARRVFIEMEER---------TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA--CGHM 94 (352)
Q Consensus 26 ~~~g~~~~A~~~f~~m~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~~~ 94 (352)
-+.+++.+|+++|.++-+. ..+--+.+|++|..++ .+.-.....+..+. .| ...|.++..+ +-+.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHh
Confidence 4678888888888877643 1345567777777543 34444444444332 12 1222333322 2355
Q ss_pred CCHHHHHHHHHHhHHhc-CCC------------CChhhHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCcchHHH
Q 048117 95 GWVDEGRRFFYSMTTEY-GII------------PQIEHYGCMVDLLSRAGFLQEAYEFIRNM-------PIKPNGVVWGA 154 (352)
Q Consensus 95 g~~~~a~~~~~~m~~~~-g~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ 154 (352)
+..++|.+.+..-..+- +.. +|-..-+..+..+...|++++++.++++| ...-+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 66777766665444210 111 12222345556666778888887777776 12246666766
Q ss_pred HHHHHHh
Q 048117 155 LLGGCRV 161 (352)
Q Consensus 155 li~~~~~ 161 (352)
++-.+.+
T Consensus 173 ~vlmlsr 179 (549)
T PF07079_consen 173 AVLMLSR 179 (549)
T ss_pred HHHHHhH
Confidence 5444433
No 285
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=82.55 E-value=32 Score=29.93 Aligned_cols=148 Identities=17% Similarity=0.172 Sum_probs=94.5
Q ss_pred HHcCCHHHHHHHHHhccc------CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCccH----
Q 048117 26 VKCGCLEGARRVFIEMEE------RT------VFTWSAMIQGLAIHGQAKEALTSFNKMIEI--------GIKPNG---- 81 (352)
Q Consensus 26 ~~~g~~~~A~~~f~~m~~------~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--------g~~p~~---- 81 (352)
.+.|+.+.|...+.+.+. |+ ...||.-...+.+..++++|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 468999999999988764 21 246666666665443888888887776432 233443
Q ss_pred -HHHHHHHHHHhccCCH---HHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHH
Q 048117 82 -VTFIGLLHACGHMGWV---DEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM--PIKPNGVVWGAL 155 (352)
Q Consensus 82 -~t~~~ll~a~~~~g~~---~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 155 (352)
.++..++.+|...+.. ++|.++++.+..+++-+| .++-.=+..+.+.++.+++.+.+.+| .+.-....+..+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~--~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP--EVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence 3567778888877765 456777777776655444 44545556666688999999999998 322234566666
Q ss_pred HHHH---HhcCCHHHHHHHHHHHH
Q 048117 156 LGGC---RVHKNIDLAEEASRQLD 176 (352)
Q Consensus 156 i~~~---~~~g~~~~a~~~~~~~~ 176 (352)
+..+ ..... ..+...+..+.
T Consensus 162 l~~i~~l~~~~~-~~a~~~ld~~l 184 (278)
T PF08631_consen 162 LHHIKQLAEKSP-ELAAFCLDYLL 184 (278)
T ss_pred HHHHHHHHhhCc-HHHHHHHHHHH
Confidence 6665 44433 44555555544
No 286
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.23 E-value=2.9 Score=23.87 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=10.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 048117 152 WGALLGGCRVHKNIDLAEEASRQL 175 (352)
Q Consensus 152 ~~~li~~~~~~g~~~~a~~~~~~~ 175 (352)
++.|-..|...|++++|..++++.
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHH
Confidence 344444444444444444444443
No 287
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.64 E-value=10 Score=26.98 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=26.7
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048117 144 PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177 (352)
Q Consensus 144 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 177 (352)
..-|++....+.+.+|.+.+++..|.++++-++.
T Consensus 37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 37 DLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5567778888888888888888888888887764
No 288
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.61 E-value=6.5 Score=34.11 Aligned_cols=148 Identities=13% Similarity=0.049 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhH-------H------------------hcCCCCC
Q 048117 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMT-------T------------------EYGIIPQ 116 (352)
Q Consensus 62 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-------~------------------~~g~~~~ 116 (352)
..+|+++|.-+.+..- -.++=.-++.++-...+..+|...+...+ . -.+.+.|
T Consensus 149 s~KA~ELFayLv~hkg--k~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~D 226 (361)
T COG3947 149 SRKALELFAYLVEHKG--KEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYD 226 (361)
T ss_pred hhHHHHHHHHHHHhcC--CcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCcccc
Confidence 5678888888765421 22333446666666666666655443221 1 0123345
Q ss_pred hhhHHHHHHHHHh-cCCHHHHHHHHHhC-C-CCC--------C-----cch----HHHHHHHHHhcCCHHHHHHHHHHHH
Q 048117 117 IEHYGCMVDLLSR-AGFLQEAYEFIRNM-P-IKP--------N-----GVV----WGALLGGCRVHKNIDLAEEASRQLD 176 (352)
Q Consensus 117 ~~~~~~li~~~~~-~g~~~~A~~~~~~m-~-~~p--------~-----~~~----~~~li~~~~~~g~~~~a~~~~~~~~ 176 (352)
..-|-..+....+ .-.++++.+++... | .-| | ..+ .+.....|..+|.+.+|.++.++..
T Consensus 227 v~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~l 306 (361)
T COG3947 227 VQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRAL 306 (361)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 5566666654433 34677787777766 1 111 1 112 3344567899999999999999999
Q ss_pred hcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 177 QLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
+.+|-+...+..|+..++..|+--.|.+-++.+.+
T Consensus 307 tldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 307 TLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred hcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 99998888899999999999998888888777753
No 289
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.14 E-value=3.4 Score=21.21 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=12.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 048117 18 CNTLIDMYVKCGCLEGARRVFI 39 (352)
Q Consensus 18 ~~~li~~~~~~g~~~~A~~~f~ 39 (352)
...|-..+...|++++|+.+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445555566666666665554
No 290
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=81.09 E-value=9.3 Score=35.58 Aligned_cols=118 Identities=15% Similarity=0.164 Sum_probs=68.9
Q ss_pred HcCCHHHH-HHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 048117 58 IHGQAKEA-LTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEA 136 (352)
Q Consensus 58 ~~g~~~~A-~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A 136 (352)
..|+...| .++|..++...-.|+.+...+.| ....|.++.+.+.+..... -+.....+-.+++....+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 34554443 34455555544556666655554 3467777777777765542 2334455667777777777788877
Q ss_pred HHHHHhC---CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 048117 137 YEFIRNM---PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180 (352)
Q Consensus 137 ~~~~~~m---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 180 (352)
..+-..| .++ +.........+..+.|.++++...|+++....|
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 7777766 222 233333333344556667777777777665444
No 291
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.06 E-value=8.7 Score=27.63 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=23.6
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048117 144 PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177 (352)
Q Consensus 144 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 177 (352)
..-|++....+.+.+|.+.+++..|.++++-++.
T Consensus 40 DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 40 DLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5557777888888888888888888888887775
No 292
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.89 E-value=3.4 Score=22.44 Aligned_cols=30 Identities=17% Similarity=0.015 Sum_probs=16.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 048117 151 VWGALLGGCRVHKNIDLAEEASRQLDQLDP 180 (352)
Q Consensus 151 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 180 (352)
+|..+-..|.+.|+.++|...|++..+..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344455555555666666666555555443
No 293
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.79 E-value=24 Score=27.39 Aligned_cols=63 Identities=13% Similarity=0.177 Sum_probs=42.8
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 048117 93 HMGWVDEGRRFFYSMTTEYGIIPQ---IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCR 160 (352)
Q Consensus 93 ~~g~~~~a~~~~~~m~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~ 160 (352)
..++++++..+++.|. -+.|+ ..++-..+ +.+.|++++|.++|++..-.+....|...+.++|
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 4788899999998887 34454 44555554 5588999999999999954433334554444443
No 294
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=80.72 E-value=35 Score=29.14 Aligned_cols=168 Identities=14% Similarity=0.124 Sum_probs=108.3
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhcccC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcc--HHHHH
Q 048117 15 IRVCNTLIDMYVKCGCLEGARRVFIEMEER------TVFTWSAMIQGLAIHGQAKEALTSFNKMIEI-GIKPN--GVTFI 85 (352)
Q Consensus 15 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~--~~t~~ 85 (352)
...|+.-+.- .+.|++++|.+-|+.+..+ ...+--.++.++.+.+++++|+..+++.... +-.|| -+.|-
T Consensus 35 ~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3456555544 4579999999999999864 2345556777888999999999999998753 33343 23444
Q ss_pred HHHHHHhccCC-------HHHHHHHHHHhHHhc---CCCCChhh-----------H-HHHHHHHHhcCCHHHHHHHHHhC
Q 048117 86 GLLHACGHMGW-------VDEGRRFFYSMTTEY---GIIPQIEH-----------Y-GCMVDLLSRAGFLQEAYEFIRNM 143 (352)
Q Consensus 86 ~ll~a~~~~g~-------~~~a~~~~~~m~~~~---g~~~~~~~-----------~-~~li~~~~~~g~~~~A~~~~~~m 143 (352)
..+.-+....+ ...|..-|+.+++++ ...||... + -.+...|.+.|.+..|..=+++|
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v 193 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV 193 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 44433332222 234555555555432 11233221 1 23456778899999888888887
Q ss_pred ----CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 048117 144 ----PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN 183 (352)
Q Consensus 144 ----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 183 (352)
+..+ .....-.+..+|.+.|..++|...-.-+....|++.
T Consensus 194 ~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 194 LENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 1111 233556678899999999999998887777667654
No 295
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.47 E-value=20 Score=29.47 Aligned_cols=75 Identities=13% Similarity=0.045 Sum_probs=41.2
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC------CCCCCcchHHHHHHHHHhcCCH
Q 048117 92 GHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM------PIKPNGVVWGALLGGCRVHKNI 165 (352)
Q Consensus 92 ~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~p~~~~~~~li~~~~~~g~~ 165 (352)
++.|+- .|.+.|-.+... +.--++....+|...|. ..+.++|..++.+. +-++|+..+.+|.+.+.+.|+.
T Consensus 118 sr~~d~-~A~~~fL~~E~~-~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 118 SRFGDQ-EALRRFLQLEGT-PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hccCcH-HHHHHHHHHcCC-CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344443 344445445522 33345555556655555 34566666665554 2245666677777777777776
Q ss_pred HHHH
Q 048117 166 DLAE 169 (352)
Q Consensus 166 ~~a~ 169 (352)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 6653
No 296
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=79.58 E-value=51 Score=30.74 Aligned_cols=117 Identities=9% Similarity=0.012 Sum_probs=77.0
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcc------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhc
Q 048117 57 AIHGQAKEALTSFNKMIEIGIKPN------GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130 (352)
Q Consensus 57 ~~~g~~~~A~~l~~~m~~~g~~p~------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~ 130 (352)
-+.++..+|.++|.+.-+. +..+ .+.-+-+|+||.. .+++.....+.+..+..|-.+-...+-+|. ..+.
T Consensus 17 qkq~~~~esEkifskI~~e-~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~--~Y~~ 92 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDE-KESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALV--AYKQ 92 (549)
T ss_pred HHHhhhhHHHHHHHHHHHH-hhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHH--HHHh
Confidence 4678899999999998654 2222 2334567777765 456666777777776655444444444443 3478
Q ss_pred CCHHHHHHHHHhC-----CCC------------CCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048117 131 GFLQEAYEFIRNM-----PIK------------PNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177 (352)
Q Consensus 131 g~~~~A~~~~~~m-----~~~------------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 177 (352)
+.+++|.+.+..- +.+ +|-..=+..+.++...|.+.+++.+++++..
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~ 156 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIE 156 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 8899988877544 111 1222234566778999999999999999876
No 297
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=79.55 E-value=44 Score=29.57 Aligned_cols=182 Identities=15% Similarity=0.071 Sum_probs=99.7
Q ss_pred HHHcCC--HHHHHHHHHhc-c-cCCHHHHHHHHHHHHHcC-----CHHHHHHHHHH--------H-HHcCCCcc------
Q 048117 25 YVKCGC--LEGARRVFIEM-E-ERTVFTWSAMIQGLAIHG-----QAKEALTSFNK--------M-IEIGIKPN------ 80 (352)
Q Consensus 25 ~~~~g~--~~~A~~~f~~m-~-~~~~~~~~~li~~~~~~g-----~~~~A~~l~~~--------m-~~~g~~p~------ 80 (352)
+++.|. ++.+.++...+ + +++...|..++..+.... ..+.....|+. + .+.|..++
T Consensus 48 l~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~ 127 (324)
T PF11838_consen 48 LARAGRLSYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHN 127 (324)
T ss_dssp HHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHH
T ss_pred HHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHH
Confidence 345554 56778888877 4 568888888777654432 11111111222 2 23355544
Q ss_pred HHHHHHH-HHHHh-ccCCHHHHHHHHHHhHHhcCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHH
Q 048117 81 GVTFIGL-LHACG-HMGWVDEGRRFFYSMTTEYGI---IPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGAL 155 (352)
Q Consensus 81 ~~t~~~l-l~a~~-~~g~~~~a~~~~~~m~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 155 (352)
....... +...+ ..+-.+.+.+.|+.......- ..+......++....+.|..+.-..+++.....++...-..+
T Consensus 128 ~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~ 207 (324)
T PF11838_consen 128 DRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRL 207 (324)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHH
Confidence 2223332 44433 223357788888888853112 345666677777778888877666666666444567778899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHccCH--HHHHHHHH
Q 048117 156 LGGCRVHKNIDLAEEASRQLDQLD-PLNNGYHVVLSNIYAEAERW--EDVARVRK 207 (352)
Q Consensus 156 i~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~--~~a~~~~~ 207 (352)
+.+.+...+.+...++++.+.... .........+ ..+...+.. +.+.+.+.
T Consensus 208 l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 208 LSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVL-AGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHH-HHHH-CSTTCHHHHHHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHH-HHHhcCChhhHHHHHHHHH
Confidence 999999999999999999988742 2222233333 344423433 55555543
No 298
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.38 E-value=12 Score=26.85 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=11.7
Q ss_pred HcCCHHHHHHHHHhcccCCHHHHHHH
Q 048117 27 KCGCLEGARRVFIEMEERTVFTWSAM 52 (352)
Q Consensus 27 ~~g~~~~A~~~f~~m~~~~~~~~~~l 52 (352)
..|++++|..+.+.+.-||...|-+|
T Consensus 51 NrG~Yq~Al~l~~~~~~pdlepw~AL 76 (115)
T TIGR02508 51 NRGDYQSALQLGNKLCYPDLEPWLAL 76 (115)
T ss_pred ccchHHHHHHhcCCCCCchHHHHHHH
Confidence 34444444444444444444444433
No 299
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.85 E-value=41 Score=30.06 Aligned_cols=114 Identities=11% Similarity=0.012 Sum_probs=87.5
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCcchHHHHHH----HHHhcCCHHH
Q 048117 94 MGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-P-IKPNGVVWGALLG----GCRVHKNIDL 167 (352)
Q Consensus 94 ~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~li~----~~~~~g~~~~ 167 (352)
.|...+|-..++.+.+ ..+.|...++--=++|.-.|+.+.-...++++ + ..||...|+-+=. ++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 4666666677888885 55677778888888999999999999999988 3 3566655543322 3456788999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHH
Q 048117 168 AEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLM 209 (352)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 209 (352)
|++..++..+..+.+.-...++.....-.|+..++.++..+-
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 999999999988888767778888888899999998876543
No 300
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=77.98 E-value=36 Score=29.55 Aligned_cols=87 Identities=16% Similarity=0.106 Sum_probs=52.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH--cCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHh
Q 048117 52 MIQGLAIHGQAKEALTSFNKMIE--IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR 129 (352)
Q Consensus 52 li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~ 129 (352)
=|.++++.+++.+++...-+--+ +.++|... -..|-.|++.+....+.++-..-.+..+ .-+..-|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIl--eLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKIL--ELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLL 165 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHH
Confidence 36777888888887776555432 23444433 3345567788887777777666654311 1223347776666654
Q ss_pred -----cCCHHHHHHHHH
Q 048117 130 -----AGFLQEAYEFIR 141 (352)
Q Consensus 130 -----~g~~~~A~~~~~ 141 (352)
.|.+++|+++..
T Consensus 166 ~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELVV 182 (309)
T ss_pred HHHhccccHHHHHHHHh
Confidence 577888877773
No 301
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.96 E-value=11 Score=31.01 Aligned_cols=89 Identities=15% Similarity=0.128 Sum_probs=64.8
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCC------cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccC
Q 048117 126 LLSRAGFLQEAYEFIRNM-PIKPN------GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAER 198 (352)
Q Consensus 126 ~~~~~g~~~~A~~~~~~m-~~~p~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 198 (352)
-+.+.|++++|..-+.+. ...|. .+.|..=..++.+.+.++.|..-.....++.|.......--..+|.+...
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 456788898888777665 22222 33455555677888889999988888888888655444444568999999
Q ss_pred HHHHHHHHHHHHhcCC
Q 048117 199 WEDVARVRKLMRNLGV 214 (352)
Q Consensus 199 ~~~a~~~~~~m~~~g~ 214 (352)
+++|..=|+.+.+...
T Consensus 184 ~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 184 YEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999887543
No 302
>PF13934 ELYS: Nuclear pore complex assembly
Probab=77.90 E-value=37 Score=28.58 Aligned_cols=52 Identities=13% Similarity=0.057 Sum_probs=25.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHH
Q 048117 123 MVDLLSRAGFLQEAYEFIRNMPIKPN-GVVWGALLGGCRVHKNIDLAEEASRQL 175 (352)
Q Consensus 123 li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~ 175 (352)
++..+.+.|+.+.|+.+++..+-.++ ......++.. ..++.+.+|..+.+..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~ 166 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRSY 166 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhC
Confidence 45555556666666666666532211 1112222223 4455666665554443
No 303
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.56 E-value=79 Score=31.44 Aligned_cols=85 Identities=12% Similarity=0.052 Sum_probs=62.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccC
Q 048117 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAER 198 (352)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 198 (352)
+.+--+.-+...|...+|.++-.+..+ ||-..|-.=+.+++..+++++-+++-+..+. +.-|.-.+.+|.+.|+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fki-pdKr~~wLk~~aLa~~~kweeLekfAkskks-----PIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKI-PDKRLWWLKLTALADIKKWEELEKFAKSKKS-----PIGYLPFVEACLKQGN 759 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCC-cchhhHHHHHHHHHhhhhHHHHHHHHhccCC-----CCCchhHHHHHHhccc
Confidence 334444455677888888888888875 6888888888999988888877766554322 2356667788899999
Q ss_pred HHHHHHHHHHH
Q 048117 199 WEDVARVRKLM 209 (352)
Q Consensus 199 ~~~a~~~~~~m 209 (352)
.++|.+.+.+.
T Consensus 760 ~~EA~KYiprv 770 (829)
T KOG2280|consen 760 KDEAKKYIPRV 770 (829)
T ss_pred HHHHhhhhhcc
Confidence 99998887654
No 304
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=77.55 E-value=31 Score=32.32 Aligned_cols=128 Identities=12% Similarity=0.119 Sum_probs=84.1
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 048117 94 MGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM--PIKPNGVVWGALLGGCRVHKNIDLAEEA 171 (352)
Q Consensus 94 ~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~ 171 (352)
.|++-.|.+-+....+.+.-.|+....-+. .....|.++.+.+.+... -+.....+-..++......|++++|...
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 456555544333343333444554443333 356889999999988877 2234566788899999999999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccCCceeEE
Q 048117 172 SRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSI 223 (352)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 223 (352)
...|...+..++.........--..|-++++.-.+++....+.+.+.++.+.
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~ 431 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNF 431 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceee
Confidence 9999875544443333322333466888999999998877666555555443
No 305
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.49 E-value=13 Score=30.96 Aligned_cols=53 Identities=13% Similarity=0.035 Sum_probs=25.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhccCCHHHHHHHHH
Q 048117 51 AMIQGLAIHGQAKEALTSFNKMIEIGIKP-NGVTFIGLLHACGHMGWVDEGRRFFY 105 (352)
Q Consensus 51 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~ 105 (352)
..++.+.+.+...+|+.+.++-.+. +| |.-+-..+++.++-.|++++|..-++
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHH
Confidence 3344455555555555555544432 22 22233344555555555555544443
No 306
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=77.41 E-value=35 Score=27.23 Aligned_cols=184 Identities=17% Similarity=0.093 Sum_probs=131.7
Q ss_pred cCCHHHHHHHHHhcccC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCccHHHHHHHHHHHhccCCHHHHH
Q 048117 28 CGCLEGARRVFIEMEER-----TVFTWSAMIQGLAIHGQAKEALTSFNKMIEI-GIKPNGVTFIGLLHACGHMGWVDEGR 101 (352)
Q Consensus 28 ~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~ 101 (352)
.+....+...+...... ....+......+...+....+...+...... ........+......+...+..+.+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35556665555554432 2578888889999999999999999988753 34455666777777888888899999
Q ss_pred HHHHHhHHhcCCCCChhhHHHHHH-HHHhcCCHHHHHHHHHhC-CCCC----CcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 048117 102 RFFYSMTTEYGIIPQIEHYGCMVD-LLSRAGFLQEAYEFIRNM-PIKP----NGVVWGALLGGCRVHKNIDLAEEASRQL 175 (352)
Q Consensus 102 ~~~~~m~~~~g~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m-~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~ 175 (352)
..+...... ...+ ......... .+...|+++.|...+.+. ...| ....+......+...++.+.+...+...
T Consensus 116 ~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALAL-DPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcC-CCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 998877732 2222 122333333 788999999999999987 2222 2223333444466788999999999999
Q ss_pred HhcCCC-CcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 176 DQLDPL-NNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 176 ~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
....+. ....+..+...+...++++.+...+.......
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD 232 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence 887776 46677788888899999999999998887644
No 307
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.67 E-value=49 Score=28.60 Aligned_cols=198 Identities=10% Similarity=0.028 Sum_probs=126.2
Q ss_pred HHhCCCCCHhHHHHHHHHHH-HcCCHHHHHHHHHhccc----CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHH---Hc
Q 048117 7 NQSGFRRNIRVCNTLIDMYV-KCGCLEGARRVFIEMEE----RT---VFTWSAMIQGLAIHGQAKEALTSFNKMI---EI 75 (352)
Q Consensus 7 ~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~f~~m~~----~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~ 75 (352)
..++-+||+..-|---+.=+ +..++++|..-|.+..+ +. -.+.-.||..+.+.|++++.+..|.+|. +.
T Consensus 18 dds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkS 97 (440)
T KOG1464|consen 18 DDSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKS 97 (440)
T ss_pred cccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 34566788877665443322 34578899998887653 22 3455678999999999999999999995 33
Q ss_pred CCCc--cHHHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC--C--
Q 048117 76 GIKP--NGVTFIGLLHACGHMGWVDEGRRFFYSMTT----EYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP--I-- 145 (352)
Q Consensus 76 g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~-- 145 (352)
.++- +..+.|++++-.+.+.+.+.-..+++.-.. .-+-...-.|-+-|-..|...|.+.+..++++++. .
T Consensus 98 AVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ 177 (440)
T KOG1464|consen 98 AVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQT 177 (440)
T ss_pred HHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcc
Confidence 3333 355788888888877776665555543321 11222333455677788888888888888888771 0
Q ss_pred ---CC-------CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCcchHHHHHHH-----HHHccCHHHHHHH
Q 048117 146 ---KP-------NGVVWGALLGGCRVHKNIDLAEEASRQLDQLD--PLNNGYHVVLSNI-----YAEAERWEDVARV 205 (352)
Q Consensus 146 ---~p-------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~-----~~~~g~~~~a~~~ 205 (352)
+. -...|..=|..|....+-.....+++...... .+.+ ...-.|.- ..+-|+|++|..=
T Consensus 178 edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTD 253 (440)
T KOG1464|consen 178 EDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTD 253 (440)
T ss_pred ccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhH
Confidence 11 13467777788888888888888888765422 1222 22223332 3466778877543
No 308
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=76.49 E-value=37 Score=27.05 Aligned_cols=123 Identities=15% Similarity=0.201 Sum_probs=84.5
Q ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHH
Q 048117 43 ERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC 122 (352)
Q Consensus 43 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~ 122 (352)
.++...|..+|..+.+.|++ ..+.++.+.++-||+......+-.... ....+.++=-+|.++.+ ..+..
T Consensus 26 ~~~~~L~~lli~lLi~~~~~----~~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~-----~~~~~ 94 (167)
T PF07035_consen 26 PVQHELYELLIDLLIRNGQF----SQLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLG-----TAYEE 94 (167)
T ss_pred CCCHHHHHHHHHHHHHcCCH----HHHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhh-----hhHHH
Confidence 45677888888888888875 445666677788888877766644433 33444444444553322 14667
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048117 123 MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177 (352)
Q Consensus 123 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 177 (352)
++..+...|++-+|+++.+..+. .+......++.+..+.+|...-..+++-...
T Consensus 95 iievLL~~g~vl~ALr~ar~~~~-~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQYHK-VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78888999999999999998632 2455667788888888887776666665544
No 309
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.38 E-value=15 Score=30.00 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=21.0
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 048117 145 IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDP 180 (352)
Q Consensus 145 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 180 (352)
..|+..+|..++.++...|+.++|.+...++...-|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345555666666666666666666666665555544
No 310
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=75.34 E-value=14 Score=22.42 Aligned_cols=34 Identities=12% Similarity=0.179 Sum_probs=22.3
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 048117 56 LAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH 89 (352)
Q Consensus 56 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 89 (352)
..+.|-..++..++++|++.|+..+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666677777777777777766666665554
No 311
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=74.86 E-value=55 Score=28.24 Aligned_cols=159 Identities=13% Similarity=0.027 Sum_probs=80.0
Q ss_pred HcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHcCCCccHHHHHHHHHHHhccCCHH-HHH
Q 048117 27 KCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKM----IEIGIKPNGVTFIGLLHACGHMGWVD-EGR 101 (352)
Q Consensus 27 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~t~~~ll~a~~~~g~~~-~a~ 101 (352)
+.+++++|.+++-.- ...+.++|+...|-++-.-| .+.+.++|......++..+...+.-+ +-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 456666666665322 23445666655555554443 34567777766555555555443221 122
Q ss_pred HHHHHhHHhc--C--CCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048117 102 RFFYSMTTEY--G--IIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177 (352)
Q Consensus 102 ~~~~~m~~~~--g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 177 (352)
.+.+.+.+-. + -..|+.....+...|.+.|++.+|..-|-.-. .|+...+..++.-....|.
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~------------- 136 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGY------------- 136 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTS-------------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcC-------------
Confidence 2333333211 2 23356778888889999999999988775443 2333333223332222232
Q ss_pred cCCCCcchH-HHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 178 LDPLNNGYH-VVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 178 ~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
|.....+ .-.+--|.-.++...|...++...+.
T Consensus 137 --~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 137 --PSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp --S--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred --CcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2222222 23344577889999999998887754
No 312
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.78 E-value=18 Score=30.10 Aligned_cols=63 Identities=19% Similarity=0.103 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048117 120 YGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182 (352)
Q Consensus 120 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 182 (352)
.+.-++.+.+.+.+++|+...++- .-+| |...=..++..++-.|++++|..-++..-++.|..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 344566677788888887776654 4455 45556677888888888888888887777766643
No 313
>PHA02875 ankyrin repeat protein; Provisional
Probab=74.40 E-value=40 Score=31.16 Aligned_cols=160 Identities=13% Similarity=0.060 Sum_probs=74.4
Q ss_pred hHhHHHHhCCCCCHhH--HHHHHHHHHHcCCHHHHHHHHHhcccCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048117 2 VHEYSNQSGFRRNIRV--CNTLIDMYVKCGCLEGARRVFIEMEERTVF--TWSAMIQGLAIHGQAKEALTSFNKMIEIGI 77 (352)
Q Consensus 2 i~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~m~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 77 (352)
+...+.+.|..|+... ..+.+...++.|+.+-+.-+++.=..++.. ...+.+...+..|+.+.+..+++ .|.
T Consensus 17 iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~~ 92 (413)
T PHA02875 17 IARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD----LGK 92 (413)
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----cCC
Confidence 3456667777776533 445566667788887776666543333221 11233455556777765544443 232
Q ss_pred CccHHH---HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHhCCCCC---Cc
Q 048117 78 KPNGVT---FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH--YGCMVDLLSRAGFLQEAYEFIRNMPIKP---NG 149 (352)
Q Consensus 78 ~p~~~t---~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~p---~~ 149 (352)
.++... -.+.+...+..|+.+-+..+ . +.|..|+... -.+.+...++.|+.+-+..+++.- ..+ |.
T Consensus 93 ~~~~~~~~~g~tpL~~A~~~~~~~iv~~L----l-~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g-~~~~~~d~ 166 (413)
T PHA02875 93 FADDVFYKDGMTPLHLATILKKLDIMKLL----I-ARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK-ACLDIEDC 166 (413)
T ss_pred cccccccCCCCCHHHHHHHhCCHHHHHHH----H-hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC-CCCCCCCC
Confidence 111110 11223333455665443333 3 2355554321 122333445667766555555432 221 22
Q ss_pred chHHHHHHHHHhcCCHHHHHHHH
Q 048117 150 VVWGALLGGCRVHKNIDLAEEAS 172 (352)
Q Consensus 150 ~~~~~li~~~~~~g~~~~a~~~~ 172 (352)
.-++.+. ..+..|+.+-+..++
T Consensus 167 ~g~TpL~-~A~~~g~~eiv~~Ll 188 (413)
T PHA02875 167 CGCTPLI-IAMAKGDIAICKMLL 188 (413)
T ss_pred CCCCHHH-HHHHcCCHHHHHHHH
Confidence 2233333 334456665444443
No 314
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=74.24 E-value=20 Score=26.95 Aligned_cols=71 Identities=18% Similarity=0.319 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 048117 64 EALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM 143 (352)
Q Consensus 64 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 143 (352)
|..+-++.+....+.|++......+.||.+.+++..|.++|+.++.+.| +...+|-.++ ++-.-+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v---------~elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYV---------KELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHH---------HHHHHHHHHh
Confidence 4445556666677889999999999999999999999999998876544 3333555544 3444555555
Q ss_pred CC
Q 048117 144 PI 145 (352)
Q Consensus 144 ~~ 145 (352)
|+
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 53
No 315
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.07 E-value=7 Score=20.78 Aligned_cols=23 Identities=22% Similarity=0.003 Sum_probs=10.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCC
Q 048117 158 GCRVHKNIDLAEEASRQLDQLDP 180 (352)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~~~ 180 (352)
++.+.|+.++|...|+++.+..|
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHccCHHHHHHHHHHHHHHCc
Confidence 33444444444444444444333
No 316
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.95 E-value=29 Score=28.52 Aligned_cols=78 Identities=12% Similarity=0.010 Sum_probs=58.2
Q ss_pred HcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc--CCCCChhhHHHHHHHHHhcCCHHH
Q 048117 58 IHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY--GIIPQIEHYGCMVDLLSRAGFLQE 135 (352)
Q Consensus 58 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--g~~~~~~~~~~li~~~~~~g~~~~ 135 (352)
+.| -++|...|-++...+.--++.....|..-| ...+.+++.+++.....-+ +-.+|+..+.+|++.|.+.|+.+.
T Consensus 119 r~~-d~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFG-DQEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccC-cHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 445 468999999998777655555555555444 4788899999887776432 336789999999999999999998
Q ss_pred HH
Q 048117 136 AY 137 (352)
Q Consensus 136 A~ 137 (352)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 85
No 317
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=73.68 E-value=4.4 Score=22.45 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=18.0
Q ss_pred CHhHHHHHHHHHHHcCCHHHHH
Q 048117 14 NIRVCNTLIDMYVKCGCLEGAR 35 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~ 35 (352)
|..+|+.|-..|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 6778888888888888888875
No 318
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.94 E-value=7.5 Score=23.15 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=22.5
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCC
Q 048117 188 VLSNIYAEAERWEDVARVRKLMRNLGV 214 (352)
Q Consensus 188 ~l~~~~~~~g~~~~a~~~~~~m~~~g~ 214 (352)
-|..+|...|+.+.|.+++++....|-
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 467889999999999999999886543
No 319
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=72.09 E-value=13 Score=19.98 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048117 48 TWSAMIQGLAIHGQAKEALTSFNKMIE 74 (352)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 74 (352)
+|..+-..|.+.|+.++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666667777777777777776654
No 320
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=71.96 E-value=9.3 Score=33.35 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 048117 47 FTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH 89 (352)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 89 (352)
.-||..|....+.|++++|+.|++|.++.|+.--..||...++
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~ 300 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK 300 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence 3477899999999999999999999999998777777765543
No 321
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=71.77 E-value=99 Score=29.84 Aligned_cols=180 Identities=15% Similarity=0.128 Sum_probs=125.6
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--ccHHHHHHH
Q 048117 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIK--PNGVTFIGL 87 (352)
Q Consensus 13 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~l 87 (352)
++..+|+.-++.-.+.|+.+.+.-+|+...-| =...|--.+.-.-..|+.+-|..++..-.+--++ |....+.+.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 46788999999999999999999999987655 2244555555555558888888887776554333 333333333
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCcchHHHHHHHH---
Q 048117 88 LHACGHMGWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGFLQEAY---EFIRNM-PIKPNGVVWGALLGGC--- 159 (352)
Q Consensus 88 l~a~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~li~~~--- 159 (352)
+ +-..|+++.|..+++.+..+ . |+ +..-.--+++..+.|..+.+. +++... +.+-+..+.+.+.--+
T Consensus 375 f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 F--EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred H--HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 3 34578999999999999864 3 55 344445667788999999988 555544 2223444444444333
Q ss_pred --HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcc
Q 048117 160 --RVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAE 197 (352)
Q Consensus 160 --~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 197 (352)
.-.++.+.|..++.++....|++...+..+++.....+
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 34578899999999999988988888888887766555
No 322
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=70.15 E-value=11 Score=18.93 Aligned_cols=18 Identities=17% Similarity=-0.036 Sum_probs=7.0
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 048117 157 GGCRVHKNIDLAEEASRQ 174 (352)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~ 174 (352)
..+...++.+.|...+..
T Consensus 9 ~~~~~~~~~~~a~~~~~~ 26 (34)
T smart00028 9 NAYLKLGDYDEALEYYEK 26 (34)
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 333333444444443333
No 323
>PRK11906 transcriptional regulator; Provisional
Probab=69.82 E-value=98 Score=29.02 Aligned_cols=174 Identities=9% Similarity=0.012 Sum_probs=107.2
Q ss_pred CCHHHHHHHHHhcccCCH---HHH--HHHHHHHHHcC-----CHHHHHHHHHHHH-HcCCCccHH-HHHHHHHHHh----
Q 048117 29 GCLEGARRVFIEMEERTV---FTW--SAMIQGLAIHG-----QAKEALTSFNKMI-EIGIKPNGV-TFIGLLHACG---- 92 (352)
Q Consensus 29 g~~~~A~~~f~~m~~~~~---~~~--~~li~~~~~~g-----~~~~A~~l~~~m~-~~g~~p~~~-t~~~ll~a~~---- 92 (352)
..+..++.. ...+..+. ..| ...+.|..... ..+.|+.+|.+.. ...+.|+-. .|..+-.++.
T Consensus 232 ~~~~~~E~~-~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~ 310 (458)
T PRK11906 232 QTVHKPERS-VRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL 310 (458)
T ss_pred hhhhhhhhh-hcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH
Confidence 455555551 22222355 677 77888776632 3567888999987 233566644 3333222221
Q ss_pred ----c-cCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcc-hHHHHHHHHHhcCCH
Q 048117 93 ----H-MGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGV-VWGALLGGCRVHKNI 165 (352)
Q Consensus 93 ----~-~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~li~~~~~~g~~ 165 (352)
. .....+|.++-+..+. --.-|......+..++.-.++.+.|..+|++. ...||.. +|...--.+.-.|+.
T Consensus 311 ~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~ 388 (458)
T PRK11906 311 HGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKI 388 (458)
T ss_pred hcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCH
Confidence 1 2334566666665552 12335666666767777888899999999998 5667543 354444556668999
Q ss_pred HHHHHHHHHHHhcCCCCcch--HHHHHHHHHHccCHHHHHHHH
Q 048117 166 DLAEEASRQLDQLDPLNNGY--HVVLSNIYAEAERWEDVARVR 206 (352)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~ 206 (352)
++|.+.+++..++.|..... ....+++|...+ +++|.++|
T Consensus 389 ~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 389 EEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 99999999998888864432 234556776654 55565554
No 324
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=68.96 E-value=5.6 Score=30.12 Aligned_cols=31 Identities=32% Similarity=0.542 Sum_probs=20.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 048117 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHAC 91 (352)
Q Consensus 59 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 91 (352)
.|.-..|..+|+.|.+.|-+||. ++.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 35555677888888888888875 44555543
No 325
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=68.76 E-value=19 Score=26.30 Aligned_cols=55 Identities=11% Similarity=0.167 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc--c--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048117 19 NTLIDMYVKCGCLEGARRVFIEME--E--------RTVFTWSAMIQGLAIHGQAKEALTSFNKMIE 74 (352)
Q Consensus 19 ~~li~~~~~~g~~~~A~~~f~~m~--~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 74 (352)
++|+.+|... +......++..=. . ....-|..++..|...|..++|++++.+...
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 5677777776 5555555544211 0 1234689999999999999999999999876
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=68.17 E-value=92 Score=32.78 Aligned_cols=116 Identities=13% Similarity=-0.003 Sum_probs=68.6
Q ss_pred CCHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhh
Q 048117 44 RTVFTWSAMI----QGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH 119 (352)
Q Consensus 44 ~~~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~ 119 (352)
+|...+.... .-+.+.+.+++|.-.|+..-+ ..-.+.+|-.+|++.+|..+..++.. +-.--..+
T Consensus 933 ~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~--~~de~~~~ 1001 (1265)
T KOG1920|consen 933 PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE--GKDELVIL 1001 (1265)
T ss_pred cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC--CHHHHHHH
Confidence 3444444444 334455777777777665411 11256788888888888888776652 22212233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 048117 120 YGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175 (352)
Q Consensus 120 ~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 175 (352)
--.|+.-+...++.-+|-++..+..-.|. -.+.-+++...+++|.++....
T Consensus 1002 a~~L~s~L~e~~kh~eAa~il~e~~sd~~-----~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1002 AEELVSRLVEQRKHYEAAKILLEYLSDPE-----EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHcccchhHHHHHHHHhcCHH-----HHHHHHhhHhHHHHHHHHHHhc
Confidence 46677778888888888888887743331 2334444455566666665543
No 327
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=65.70 E-value=27 Score=31.19 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=35.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhccCCHHHHHHHH
Q 048117 54 QGLAIHGQAKEALTSFNKMIEIGIKP-NGVTFIGLLHACGHMGWVDEGRRFF 104 (352)
Q Consensus 54 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~ 104 (352)
+-|.++|.+++|++.|..-.. +.| |.+++..-..||.+..++..|+.=-
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDC 154 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhH
Confidence 456778888888888877654 456 7788877777888777776555433
No 328
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=65.14 E-value=25 Score=31.45 Aligned_cols=90 Identities=11% Similarity=-0.010 Sum_probs=49.6
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCcchHHHHHHHHHhcCCHH
Q 048117 90 ACGHMGWVDEGRRFFYSMTTEYGIIP-QIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIK-PNGVVWGALLGGCRVHKNID 166 (352)
Q Consensus 90 a~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~ 166 (352)
-|.+.|.+++|...|..-. .+.| +.++|..-..+|.+..++..|..=-... ... .-...|+.=..+-...|+..
T Consensus 106 ~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 4556677777777776544 3455 6677777777777777776554333222 111 01123333333334445566
Q ss_pred HHHHHHHHHHhcCCCC
Q 048117 167 LAEEASRQLDQLDPLN 182 (352)
Q Consensus 167 ~a~~~~~~~~~~~~~~ 182 (352)
+|.+=++....+.|.+
T Consensus 183 EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHhHHHHHhhCccc
Confidence 6666666666667764
No 329
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.99 E-value=22 Score=24.26 Aligned_cols=43 Identities=7% Similarity=0.010 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHH
Q 048117 95 GWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGFLQEAY 137 (352)
Q Consensus 95 g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~ 137 (352)
...++|+..+....++..-.|+ -.+...|+.+|+..|++.+++
T Consensus 20 ~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 20 NETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREML 63 (80)
T ss_pred chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444432221222 133444444455555444443
No 330
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=64.91 E-value=1.3e+02 Score=28.69 Aligned_cols=162 Identities=14% Similarity=0.162 Sum_probs=110.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHH
Q 048117 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMV 124 (352)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li 124 (352)
|-...-+++..+.++-...-...+-.+|...| -+...|..++++|... .-++-..++++++ ++.+. |++.-.-|.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~v-e~dfn-Dvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLV-EYDFN-DVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHH-Hhcch-hHHHHHHHH
Confidence 44566778889999988999999999998854 5777888999999988 6677788899888 33433 444445566
Q ss_pred HHHHhcCCHHHHHHHHHhC--CCCC---C---cchHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCC-CcchHHHHHHHHH
Q 048117 125 DLLSRAGFLQEAYEFIRNM--PIKP---N---GVVWGALLGGCRVHKNIDLAEEASRQLDQ-LDPL-NNGYHVVLSNIYA 194 (352)
Q Consensus 125 ~~~~~~g~~~~A~~~~~~m--~~~p---~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~-~~~~~~~l~~~~~ 194 (352)
.-|-+ ++.+.+..+|.+. .+-| + ...|.-+..-- ..+.+...++...+.. .+.. -...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 66655 8888898888887 2111 2 12566665422 3456666666666654 2221 1223344556788
Q ss_pred HccCHHHHHHHHHHHHhcCC
Q 048117 195 EAERWEDVARVRKLMRNLGV 214 (352)
Q Consensus 195 ~~g~~~~a~~~~~~m~~~g~ 214 (352)
...+|++|.++...+.+.+-
T Consensus 217 ~~eN~~eai~Ilk~il~~d~ 236 (711)
T COG1747 217 ENENWTEAIRILKHILEHDE 236 (711)
T ss_pred cccCHHHHHHHHHHHhhhcc
Confidence 89999999999997665543
No 331
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=64.75 E-value=58 Score=24.50 Aligned_cols=56 Identities=5% Similarity=-0.032 Sum_probs=36.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCcchHHHHHHHHHHccCHHHHHHHHHH
Q 048117 151 VWGALLGGCRVHKNIDLAEEASRQLDQ--LDPLNNGYHVVLSNIYAEAERWEDVARVRKL 208 (352)
Q Consensus 151 ~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (352)
-|-.+--.|+..-+ .+..+|..|.. .+...+..|......+...|++++|.++|+.
T Consensus 67 RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 67 RYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 33333334444333 77888888876 4445556777888888888999999888875
No 332
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=64.73 E-value=16 Score=22.75 Aligned_cols=31 Identities=19% Similarity=0.112 Sum_probs=23.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 048117 155 LLGGCRVHKNIDLAEEASRQLDQLDPLNNGY 185 (352)
Q Consensus 155 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 185 (352)
+.-++.+.|+.++|.+..+.+.+.+|.+...
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 4456788899999999999999988887543
No 333
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=64.56 E-value=86 Score=28.95 Aligned_cols=50 Identities=12% Similarity=0.083 Sum_probs=26.1
Q ss_pred HHHcCCHHHHHHHHHHHHH---cCCCccHHHHHHHHHHHhccCCHHHHHHHHH
Q 048117 56 LAIHGQAKEALTSFNKMIE---IGIKPNGVTFIGLLHACGHMGWVDEGRRFFY 105 (352)
Q Consensus 56 ~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 105 (352)
..++|++..|.+.|.+.+. .+++|+...|.....+..+.|++++|..--+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~ 311 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCN 311 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhh
Confidence 3455666666666666543 2234444445555555555566555555443
No 334
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=64.42 E-value=1.9e+02 Score=30.67 Aligned_cols=20 Identities=25% Similarity=0.586 Sum_probs=12.7
Q ss_pred HHHHHccCHHHHHHHHHHHH
Q 048117 191 NIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 191 ~~~~~~g~~~~a~~~~~~m~ 210 (352)
..|++...|++|.++-..-.
T Consensus 1034 ~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1034 ALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHhhHhHHHHHHHHHHhcc
Confidence 44667777888777654433
No 335
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.08 E-value=97 Score=26.52 Aligned_cols=57 Identities=9% Similarity=-0.136 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----c--CCCCcchHHHHHHHHHHccCHHHHHHHHHHHH
Q 048117 154 ALLGGCRVHKNIDLAEEASRQLDQ----L--DPLNNGYHVVLSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 154 ~li~~~~~~g~~~~a~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
.+-+.+.+...+++|-..+.+-.. . -+.....+...|-.|.-..++..|++.++.--
T Consensus 155 k~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~ 217 (308)
T KOG1585|consen 155 KCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCS 217 (308)
T ss_pred HhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchh
Confidence 333445555556555554443221 1 12222335566666777788888888877643
No 336
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=63.06 E-value=23 Score=24.14 Aligned_cols=46 Identities=20% Similarity=0.149 Sum_probs=33.9
Q ss_pred HcCCHHHHHHHHHHHHHcCCCc-cH-HHHHHHHHHHhccCCHHHHHHH
Q 048117 58 IHGQAKEALTSFNKMIEIGIKP-NG-VTFIGLLHACGHMGWVDEGRRF 103 (352)
Q Consensus 58 ~~g~~~~A~~l~~~m~~~g~~p-~~-~t~~~ll~a~~~~g~~~~a~~~ 103 (352)
...+.++|+..|+...+.-..| +. .++..++.+++..|+++++.+.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888887543333 32 2688889999999998887764
No 337
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.32 E-value=1e+02 Score=30.06 Aligned_cols=132 Identities=11% Similarity=-0.008 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccC
Q 048117 16 RVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMG 95 (352)
Q Consensus 16 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 95 (352)
..-+.+...+.+.|..++|+++-- ++|. - .....+.|+.+.|.++..+.. +..-|..|-++..+.|
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s~---D~d~-r----Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~ 680 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELST---DPDQ-R----FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAG 680 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcCC---Chhh-h----hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcc
Confidence 356778888888888888877532 2221 1 223356788888877776542 4566778888888888
Q ss_pred CHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 048117 96 WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQ 174 (352)
Q Consensus 96 ~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 174 (352)
++..|.+.|.... -|..|+-.|...|+-+....+-.... .....|...-+|...|+++++.+++..
T Consensus 681 ~l~lA~EC~~~a~----------d~~~LlLl~t~~g~~~~l~~la~~~~---~~g~~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 681 ELPLASECFLRAR----------DLGSLLLLYTSSGNAEGLAVLASLAK---KQGKNNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred cchhHHHHHHhhc----------chhhhhhhhhhcCChhHHHHHHHHHH---hhcccchHHHHHHHcCCHHHHHHHHHh
Confidence 8888888776544 25566667777776654333333321 111223444566677888887777654
No 338
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.94 E-value=1e+02 Score=31.14 Aligned_cols=144 Identities=11% Similarity=0.036 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH----HHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHH
Q 048117 50 SAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH----ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125 (352)
Q Consensus 50 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~----a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~ 125 (352)
..-|+.+.+...++-|+.+-+. .+..++ +...+.. -+-+.|++++|...|-+-.. -++|+. +|.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~~~d~d--~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~s~-----Vi~ 405 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---QHLDED--TLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEPSE-----VIK 405 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---cCCCHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCChHH-----HHH
Confidence 3445555555555555544332 222222 2222222 23345666666555544431 223321 233
Q ss_pred HHHhcCCHHHHHHHHHhC---CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHH
Q 048117 126 LLSRAGFLQEAYEFIRNM---PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDV 202 (352)
Q Consensus 126 ~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 202 (352)
-|....++.+-..+++.+ +. .+...-+.|+.+|.+.++.++-.++.+...+ +.. ..-....+..+.+.+-.++|
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~-~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEW-FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCCC-cce-eeeHHHHHHHHHHhChHHHH
Confidence 333334444444444444 22 2333444566666666666655555443321 000 00012334445555555555
Q ss_pred HHHHHH
Q 048117 203 ARVRKL 208 (352)
Q Consensus 203 ~~~~~~ 208 (352)
..+-.+
T Consensus 483 ~~LA~k 488 (933)
T KOG2114|consen 483 ELLATK 488 (933)
T ss_pred HHHHHH
Confidence 555443
No 339
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=61.85 E-value=27 Score=20.78 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=9.1
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 048117 54 QGLAIHGQAKEALTSFNKMI 73 (352)
Q Consensus 54 ~~~~~~g~~~~A~~l~~~m~ 73 (352)
.+|...|+.+.|.+++++..
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444444
No 340
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=61.75 E-value=22 Score=32.59 Aligned_cols=127 Identities=13% Similarity=-0.009 Sum_probs=85.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHh---HHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-------CC-CCCcch
Q 048117 84 FIGLLHACGHMGWVDEGRRFFYSM---TTEYGIIPQ-IEHYGCMVDLLSRAGFLQEAYEFIRNM-------PI-KPNGVV 151 (352)
Q Consensus 84 ~~~ll~a~~~~g~~~~a~~~~~~m---~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~-~p~~~~ 151 (352)
|..|-+.|--.|+++.|...++.- .+++|-... ...+..|.+++.-.|+++.|.+.++.. +- .....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 333444444557889888776542 234554433 356788889999999999998888764 21 123445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh----cC--CCCcchHHHHHHHHHHccCHHHHHHHHHHHH
Q 048117 152 WGALLGGCRVHKNIDLAEEASRQLDQ----LD--PLNNGYHVVLSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 152 ~~~li~~~~~~g~~~~a~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
.-+|-+.|.-..++++|+.++.+-.. ++ .-....+-+|-++|...|.-++|..+...-.
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 66777788878888999988876433 11 1223567788899999999999887765443
No 341
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=61.60 E-value=25 Score=22.63 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=11.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 048117 51 AMIQGLAIHGQAKEALTSFNKMI 73 (352)
Q Consensus 51 ~li~~~~~~g~~~~A~~l~~~m~ 73 (352)
.+|.++.+.|++++|.++.+++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555555555555555555543
No 342
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=61.43 E-value=49 Score=29.49 Aligned_cols=51 Identities=8% Similarity=0.220 Sum_probs=23.7
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 048117 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIR 141 (352)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 141 (352)
-.+.|++.+|.+.++.+.++..+..-..+...|+.++.....+.+...++-
T Consensus 285 ARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 285 ARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred HHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666655432211112223345555555544444444443
No 343
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=61.00 E-value=1e+02 Score=25.96 Aligned_cols=162 Identities=14% Similarity=0.074 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHH
Q 048117 46 VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVD 125 (352)
Q Consensus 46 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~ 125 (352)
+..||-+.--+...|+++.|.+.|+...+-.-.-+-...|--| ++--.|++.-|.+=+-..-+. .|+. -|.+|--
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~---D~~D-PfR~LWL 173 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQD---DPND-PFRSLWL 173 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhc---CCCC-hHHHHHH
Confidence 5678888888899999999999999987753322333333333 333458888887766555533 2322 2333322
Q ss_pred HH-HhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------cchHHHHHHHHHHcc
Q 048117 126 LL-SRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN-------NGYHVVLSNIYAEAE 197 (352)
Q Consensus 126 ~~-~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g 197 (352)
-+ -+.-++.+|..-+.+=-.+.|..-|...|-.|.- |++. .+.+++.+.....++ ..+|.-|..-|...|
T Consensus 174 Yl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 174 YLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred HHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 22 2344667775444332123455677776666542 2221 112334443322222 236667888899999
Q ss_pred CHHHHHHHHHHHHhcCC
Q 048117 198 RWEDVARVRKLMRNLGV 214 (352)
Q Consensus 198 ~~~~a~~~~~~m~~~g~ 214 (352)
+.++|..+|+.....++
T Consensus 252 ~~~~A~~LfKLaiannV 268 (297)
T COG4785 252 DLDEATALFKLAVANNV 268 (297)
T ss_pred cHHHHHHHHHHHHHHhH
Confidence 99999999998876655
No 344
>PRK11619 lytic murein transglycosylase; Provisional
Probab=60.88 E-value=1.8e+02 Score=28.93 Aligned_cols=117 Identities=7% Similarity=-0.041 Sum_probs=70.7
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCcchHHHHHHHHHhcCCHHHHHH
Q 048117 94 MGWVDEGRRFFYSMTTEYGIIPQI--EHYGCMVDLLSRAGFLQEAYEFIRNMP-IKPNGVVWGALLGGCRVHKNIDLAEE 170 (352)
Q Consensus 94 ~g~~~~a~~~~~~m~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~li~~~~~~g~~~~a~~ 170 (352)
..+.+.|..++.......+..+.. .++..+.......+..++|...++... ...|...+..-+......++++.+..
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~ 333 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNT 333 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHH
Confidence 345678888888775444443332 334444433334333667777777752 22244444555555568888888888
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHH
Q 048117 171 ASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
.+..|............-+..++...|+.++|...|+...
T Consensus 334 ~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 334 WLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8877754222333444556677677899999988888764
No 345
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.52 E-value=89 Score=25.23 Aligned_cols=131 Identities=13% Similarity=0.032 Sum_probs=80.9
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCcchHHHHH-
Q 048117 80 NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIE-HYGCMVDLLSRAGFLQEAYEFIRNMP-IKPNGVVWGALL- 156 (352)
Q Consensus 80 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~li- 156 (352)
...+|...++ .++.+..++|+.-|..+.+. |...-++ .---........|+...|...|++++ ..|.+....-+.
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lekt-g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKT-GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 3445665554 35678889999999998853 5432221 11122344568899999999999992 233333332211
Q ss_pred --H--HHHhcCCHHHHHHHHHHHHh-cCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 157 --G--GCRVHKNIDLAEEASRQLDQ-LDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 157 --~--~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
. .+..+|.++....-.+-+.. ..|-....-.+|--+--+.|++.+|.+.|..+...
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1 24567777766555544433 23332233346766677999999999999998763
No 346
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=60.44 E-value=45 Score=23.27 Aligned_cols=61 Identities=18% Similarity=0.102 Sum_probs=28.3
Q ss_pred HHHHHhcccCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHH
Q 048117 35 RRVFIEMEERTVFTWSAMIQGLA---IHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG 100 (352)
Q Consensus 35 ~~~f~~m~~~~~~~~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 100 (352)
.++++...++++.|-+-.=..-+ ..|+.+.|.+++..+. .| |+. |...++++...|.-+-|
T Consensus 22 ~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~a--F~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QK--EGW--FSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--CcH--HHHHHHHHHHcCchhhh
Confidence 44555555554444332222222 3456666666666655 32 333 34455555555544433
No 347
>PRK12798 chemotaxis protein; Reviewed
Probab=60.29 E-value=1.4e+02 Score=27.56 Aligned_cols=194 Identities=14% Similarity=0.144 Sum_probs=125.3
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHhcccC----CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCccH----HHHHH
Q 048117 18 CNTLIDMYVK--CGCLEGARRVFIEMEER----TVFTWSAMIQGLAIH-GQAKEALTSFNKMIEIGIKPNG----VTFIG 86 (352)
Q Consensus 18 ~~~li~~~~~--~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~----~t~~~ 86 (352)
-+.|+++..+ .|+.++|.+.+..+..+ ....|-+|+.+-... .++..|+++|++.+- .-|-+ ....-
T Consensus 113 d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRR 190 (421)
T PRK12798 113 DQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRR 190 (421)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHH
Confidence 4455555443 79999999999988753 567788888776654 579999999999864 23433 23444
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHH-HHHHHHh---cCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 048117 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC-MVDLLSR---AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVH 162 (352)
Q Consensus 87 ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~-li~~~~~---~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~ 162 (352)
-|....+.|+.+++..+-....+++.-.|-..-|-. +...+.+ ....+.-..++..|.-.--...|-.+-..-...
T Consensus 191 si~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~ 270 (421)
T PRK12798 191 SLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALID 270 (421)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHc
Confidence 566678899999988887777766655554333322 2233333 334555667777774233356888888899999
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH-----HccCHHHHHHHHHHHHhcCC
Q 048117 163 KNIDLAEEASRQLDQLDPLNNGYHVVLSNIYA-----EAERWEDVARVRKLMRNLGV 214 (352)
Q Consensus 163 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~m~~~g~ 214 (352)
|+.+.|...-.+...+...+ ..-......|. -..+++++.+.+..+....+
T Consensus 271 Gk~~lA~~As~~A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L 326 (421)
T PRK12798 271 GKTELARFASERALKLADPD-SADAARARLYRGAALVASDDAESALEELSQIDRDKL 326 (421)
T ss_pred CcHHHHHHHHHHHHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhC
Confidence 99999999999888744322 12222223332 34456677666666554444
No 348
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=59.57 E-value=1.4e+02 Score=27.19 Aligned_cols=122 Identities=12% Similarity=0.048 Sum_probs=80.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCC--CC--ChhhHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCcc-hHH
Q 048117 86 GLLHACGHMGWVDEGRRFFYSMTTEYGI--IP--QIEHYGCMVDLLSRAGFLQEAYEFIRNM-------PIKPNGV-VWG 153 (352)
Q Consensus 86 ~ll~a~~~~g~~~~a~~~~~~m~~~~g~--~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~-~~~ 153 (352)
++-.|....+.++++.+.|+...+-..- .| ...+|..|-..|++..++++|+-+..+. +++ |.. -|.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr 205 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYR 205 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHH
Confidence 4556666777888888888766532111 12 2568899999999999999876544433 433 222 233
Q ss_pred H-----HHHHHHhcCCHHHHHHHHHHHHh--cCCCCcc----hHHHHHHHHHHccCHHHHHHHHHH
Q 048117 154 A-----LLGGCRVHKNIDLAEEASRQLDQ--LDPLNNG----YHVVLSNIYAEAERWEDVARVRKL 208 (352)
Q Consensus 154 ~-----li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~ 208 (352)
. |--++...|.+..|.+..++..+ ....+.. ....+.+.|-..|+.+.|+.-|+.
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 2 34467888988888888888765 2222222 234688899999999988877654
No 349
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=59.13 E-value=57 Score=26.33 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 048117 165 IDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGV 214 (352)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 214 (352)
+++|...|+.....+|.+. .|..-+.+. .+|-+++.++.+.+.
T Consensus 96 F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNE-LYRKSLEMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H-HHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhcCCCcH-HHHHHHHHH------HhhHHHHHHHHHHHh
Confidence 3445555555555566543 333332333 235555555555544
No 350
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.23 E-value=38 Score=27.50 Aligned_cols=51 Identities=12% Similarity=-0.048 Sum_probs=28.1
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 048117 93 HMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM 143 (352)
Q Consensus 93 ~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 143 (352)
...+.+......+...+-....|+..+|..++..+...|+.++|.++..++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444444444433344566666666666666666666666666655
No 351
>PRK10941 hypothetical protein; Provisional
Probab=57.35 E-value=1.3e+02 Score=26.13 Aligned_cols=63 Identities=21% Similarity=0.075 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 151 VWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 151 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
..+.+-.+|.+.++++.|.++.+.+....|+++.-+-----.|.+.|.+..|..=++...+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 345666778999999999999999999999887555444455899999999999888887653
No 352
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=56.68 E-value=91 Score=25.49 Aligned_cols=15 Identities=40% Similarity=0.649 Sum_probs=11.1
Q ss_pred hcCCHHHHHHHHHhC
Q 048117 129 RAGFLQEAYEFIRNM 143 (352)
Q Consensus 129 ~~g~~~~A~~~~~~m 143 (352)
+.|+++.|.+.++-|
T Consensus 133 ~~~~~~~Ae~~~~~M 147 (204)
T COG2178 133 RKGSFEEAERFLKFM 147 (204)
T ss_pred HhccHHHHHHHHHHH
Confidence 567778887777777
No 353
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=56.43 E-value=1.6e+02 Score=26.86 Aligned_cols=126 Identities=16% Similarity=0.070 Sum_probs=79.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-----CccHHHHHHHHHHHhccCCHHHHHHHHHH---hHHhcCCCCChhhHHH
Q 048117 51 AMIQGLAIHGQAKEALTSFNKMIEIGI-----KPNGVTFIGLLHACGHMGWVDEGRRFFYS---MTTEYGIIPQIEHYGC 122 (352)
Q Consensus 51 ~li~~~~~~g~~~~A~~l~~~m~~~g~-----~p~~~t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~g~~~~~~~~~~ 122 (352)
+|-+++.-.+.++.+++.|+...+.-- -.....|.+|-..|.+..+.++|.-+... +++.+++..-..-|.+
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 466677777889999999998754211 11334688888899999999887655432 2334454433334444
Q ss_pred HH-----HHHHhcCCHHHHHHHHHhC-------CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048117 123 MV-----DLLSRAGFLQEAYEFIRNM-------PIKP-NGVVWGALLGGCRVHKNIDLAEEASRQLD 176 (352)
Q Consensus 123 li-----~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 176 (352)
++ -+|...|++.+|.+.-++. |-+| -......+...|...|+.|.|..-++..-
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 32 3456677766665555543 5333 22334456677899999999888777643
No 354
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=56.31 E-value=1.4e+02 Score=26.17 Aligned_cols=111 Identities=8% Similarity=0.044 Sum_probs=82.6
Q ss_pred HHHHHHHHHHH-cCCCccHHHHHHHHHHHhc-c-CCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048117 64 EALTSFNKMIE-IGIKPNGVTFIGLLHACGH-M-GWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFI 140 (352)
Q Consensus 64 ~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~-~-g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 140 (352)
+|+.+|+.... ..+--|..+...+++.... . .....-.++.+.+....+-.++..+....+..+++.+++.+-.+++
T Consensus 146 ~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW 225 (292)
T PF13929_consen 146 EALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFW 225 (292)
T ss_pred HHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHH
Confidence 56777774322 3355677777777777665 2 2344445566666666677888889999999999999999999999
Q ss_pred HhC--C--CCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 048117 141 RNM--P--IKPNGVVWGALLGGCRVHKNIDLAEEASRQ 174 (352)
Q Consensus 141 ~~m--~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 174 (352)
+.. . ..-|...|..+|......|+.+-...+.+.
T Consensus 226 ~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 226 EQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 887 2 234888999999999999999988888765
No 355
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=56.06 E-value=68 Score=31.54 Aligned_cols=47 Identities=11% Similarity=0.029 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--cCCCccHHHHHHHHHHHhccCCH
Q 048117 51 AMIQGLAIHGQAKEALTSFNKMIE--IGIKPNGVTFIGLLHACGHMGWV 97 (352)
Q Consensus 51 ~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~ 97 (352)
+|+.+|..+|++..+.++++.... .|-+.=...||..|....+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 555666666666666666655542 22222233455555555555543
No 356
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=55.94 E-value=90 Score=27.43 Aligned_cols=50 Identities=12% Similarity=-0.092 Sum_probs=34.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 048117 83 TFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ 134 (352)
Q Consensus 83 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~ 134 (352)
+++.+..+|..+|.+.+|.++.+...+ --+.+...+-.|+..|...|+--
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~i 330 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEI 330 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccch
Confidence 455666777778888888887776662 22455666777777887777733
No 357
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.73 E-value=1.4e+02 Score=25.97 Aligned_cols=90 Identities=18% Similarity=0.226 Sum_probs=53.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhC--------CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCc----chHHH
Q 048117 123 MVDLLSRAGFLQEAYEFIRNM--------PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ--LDPLNN----GYHVV 188 (352)
Q Consensus 123 li~~~~~~g~~~~A~~~~~~m--------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~----~~~~~ 188 (352)
+|..+.+.|++++.+..+++| ...-+..+.|+++.--..+.+.+....+++.-.. .+..+. .+..-
T Consensus 71 miKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtK 150 (440)
T KOG1464|consen 71 MIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTK 150 (440)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccch
Confidence 455566677777776666666 1223455667777666666666666666654332 111111 23345
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhc
Q 048117 189 LSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 189 l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
|-..|...|.+.+..++++++...
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQS 174 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHHH
Confidence 667777778888777777777643
No 358
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.25 E-value=1.4e+02 Score=25.47 Aligned_cols=16 Identities=13% Similarity=0.048 Sum_probs=9.5
Q ss_pred HHcCCHHHHHHHHHhc
Q 048117 26 VKCGCLEGARRVFIEM 41 (352)
Q Consensus 26 ~~~g~~~~A~~~f~~m 41 (352)
+-.+.+++|-++|.+.
T Consensus 25 gg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERA 40 (288)
T ss_pred CCCcchHHHHHHHHHH
Confidence 3344667777776654
No 359
>PF13934 ELYS: Nuclear pore complex assembly
Probab=54.07 E-value=1.3e+02 Score=25.25 Aligned_cols=108 Identities=21% Similarity=0.249 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHH
Q 048117 47 FTWSAMIQGLAI--HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMV 124 (352)
Q Consensus 47 ~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li 124 (352)
..|...+.|+.- ++++++|++++.+- .+.|+... -++.++...|+.+.|..+++.+. ....+...-..++
T Consensus 77 ~~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~ 148 (226)
T PF13934_consen 77 PKYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYF 148 (226)
T ss_pred HHHHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHH
Confidence 345666676654 57788888887432 23333332 47777888899999999887543 1122233334444
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC
Q 048117 125 DLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHK 163 (352)
Q Consensus 125 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g 163 (352)
.. ..++.+.+|..+-+...-.-....|..++..+....
T Consensus 149 ~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 149 VA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 44 667899999998888743222457888888877544
No 360
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=53.62 E-value=95 Score=23.41 Aligned_cols=56 Identities=16% Similarity=0.130 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHH-HHHHHHHhcCCHHHHHHHH
Q 048117 117 IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWG-ALLGGCRVHKNIDLAEEAS 172 (352)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~-~li~~~~~~g~~~~a~~~~ 172 (352)
..+-.++..++.-.|..+.|.++++..+..++-...| -++..|.+..+.++..++-
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q 122 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQ 122 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3445556666666666666666666554433333333 2555555555554444443
No 361
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=53.12 E-value=70 Score=24.17 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=30.8
Q ss_pred hCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048117 142 NMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLD 179 (352)
Q Consensus 142 ~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 179 (352)
.+.+-|++......+.+|.+-+++..|.++|+-++..-
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~ 114 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC 114 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 34667888888889999999999999999998887533
No 362
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.32 E-value=29 Score=26.45 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=19.4
Q ss_pred chhHHHHHHHHHHHHHHHHHcCcccCCcc
Q 048117 239 HPQAEKIFQMWEKLLDGMKLKGYIPNTSV 267 (352)
Q Consensus 239 ~~~~~~~~~~~~~l~~~m~~~g~~p~~~t 267 (352)
.|...+++. +|+.|.+.|-.||.-.
T Consensus 108 ygsk~DaY~----VF~kML~~G~pPddW~ 132 (140)
T PF11663_consen 108 YGSKTDAYA----VFRKMLERGNPPDDWD 132 (140)
T ss_pred hccCCcHHH----HHHHHHhCCCCCccHH
Confidence 355566776 8889999999999743
No 363
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=51.98 E-value=1.1e+02 Score=24.81 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=23.2
Q ss_pred HHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048117 133 LQEAYEFIRNM-PIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177 (352)
Q Consensus 133 ~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 177 (352)
+++|.+.|++. ..+|+..+|+.-+.... +|-+++.++.+
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~------kap~lh~e~~~ 135 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLEMAA------KAPELHMEIHK 135 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHH------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHH------hhHHHHHHHHH
Confidence 56677777766 55677777777777653 34445555543
No 364
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.93 E-value=54 Score=21.08 Aligned_cols=46 Identities=7% Similarity=0.171 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048117 62 AKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTT 109 (352)
Q Consensus 62 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 109 (352)
.++..++++.++.. +-|-.---.+|.++...|++++|.++.+.+..
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444455554431 23444555678888888888888888777764
No 365
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=51.91 E-value=65 Score=25.69 Aligned_cols=61 Identities=8% Similarity=0.029 Sum_probs=40.0
Q ss_pred HHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 048117 72 MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ 134 (352)
Q Consensus 72 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~ 134 (352)
+++.|++++..-. .++..+......-.|.++++.+.+. +..++..|-.--++.+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEE
Confidence 4566777666544 3455555555666788888888854 66666655555567788888764
No 366
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=51.79 E-value=45 Score=23.18 Aligned_cols=29 Identities=7% Similarity=0.114 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048117 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMI 73 (352)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 73 (352)
|...|-.++..+..+=-++...++++.|.
T Consensus 42 dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 42 DPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred ChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44555555555555555555555555553
No 367
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=51.31 E-value=1.6e+02 Score=25.50 Aligned_cols=187 Identities=12% Similarity=0.058 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcc------------cCC-----HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcC
Q 048117 17 VCNTLIDMYVKCGCLEGARRVFIEME------------ERT-----VFTWSAMIQGLAIHGQA---KEALTSFNKMIEIG 76 (352)
Q Consensus 17 ~~~~li~~~~~~g~~~~A~~~f~~m~------------~~~-----~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g 76 (352)
.||.=.+.+.+..+.+.|...+++.- .++ ..+...++.+|.+.+.. ++|..+.+.+...
T Consensus 38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e- 116 (278)
T PF08631_consen 38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE- 116 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-
Confidence 45555555554436666655544321 122 25677888888887764 4566677777543
Q ss_pred CCcc-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHH---HhcCCHHHHHHHHHhC---CCCCCc
Q 048117 77 IKPN-GVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL---SRAGFLQEAYEFIRNM---PIKPNG 149 (352)
Q Consensus 77 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m---~~~p~~ 149 (352)
-|+ ..+|..-+..+.+.++.+.+.+.+.+|+.... -....+...+..+ .... ...|...++.+ ...|..
T Consensus 117 -~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~--~~e~~~~~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 117 -YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD--HSESNFDSILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred -CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCCh
Confidence 233 44555567777779999999999999996433 1223444444444 3333 34555555555 333333
Q ss_pred chHHH--HHHH---HHhcCC------HHHHHHHHHHHHh--cCCCCcchHHHH-------HHHHHHccCHHHHHHHHHH
Q 048117 150 VVWGA--LLGG---CRVHKN------IDLAEEASRQLDQ--LDPLNNGYHVVL-------SNIYAEAERWEDVARVRKL 208 (352)
Q Consensus 150 ~~~~~--li~~---~~~~g~------~~~a~~~~~~~~~--~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~ 208 (352)
..|-. ++.- ..+.++ ++....+++.+.+ ..|-+..+..++ ....-+.+++++|.+.|+-
T Consensus 193 ~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 193 DQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred hHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 21211 1111 222222 4555555664443 333333332221 1234578999999998874
No 368
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=50.95 E-value=35 Score=17.63 Aligned_cols=28 Identities=11% Similarity=0.032 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 048117 163 KNIDLAEEASRQLDQLDPLNNGYHVVLS 190 (352)
Q Consensus 163 g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 190 (352)
|+.+.+..+|+.+....|.....+...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 4566777777777766665555554443
No 369
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=50.93 E-value=1.8e+02 Score=25.83 Aligned_cols=77 Identities=22% Similarity=0.223 Sum_probs=38.4
Q ss_pred HhCCCCCHhHHHHHH-HHHHHcCC-HHHHHHHHHhcc-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHH
Q 048117 8 QSGFRRNIRVCNTLI-DMYVKCGC-LEGARRVFIEME-ERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTF 84 (352)
Q Consensus 8 ~~g~~~~~~~~~~li-~~~~~~g~-~~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 84 (352)
..|. |+..+.++|. +.+.+.|= ..-|.++|+.-. ++| -|.+++.+-+.+.-+.-+++ ++||..|-
T Consensus 159 ~nGt-~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek~---i~~lis~Lrkg~md~rLmef--------fPpnkrs~ 226 (412)
T KOG2297|consen 159 SNGT-LPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEKD---INDLISSLRKGKMDDRLMEF--------FPPNKRSV 226 (412)
T ss_pred hCCC-CCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhcc---HHHHHHHHHhcChHhHHHHh--------cCCcchhH
Confidence 3454 3333444443 34445553 334666676433 344 34556665555444444333 46777666
Q ss_pred HHHHHHHhccCC
Q 048117 85 IGLLHACGHMGW 96 (352)
Q Consensus 85 ~~ll~a~~~~g~ 96 (352)
-+.-.-+...|-
T Consensus 227 E~Fak~Ft~agL 238 (412)
T KOG2297|consen 227 EHFAKYFTDAGL 238 (412)
T ss_pred HHHHHHHhHhhH
Confidence 665555555553
No 370
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=50.83 E-value=1.2e+02 Score=25.90 Aligned_cols=54 Identities=11% Similarity=0.092 Sum_probs=28.7
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcC----CCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048117 87 LLHACGHMGWVDEGRRFFYSMTTEYG----IIPQIEHYGCMVDLLSRAGFLQEAYEFI 140 (352)
Q Consensus 87 ll~a~~~~g~~~~a~~~~~~m~~~~g----~~~~~~~~~~li~~~~~~g~~~~A~~~~ 140 (352)
+..-|.+.|++++|.++|+.+...+. ..+...+...+..++.+.|+.++...+-
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44455566666666666655543332 2233444555555556666666655443
No 371
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.81 E-value=2.8e+02 Score=28.01 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=14.1
Q ss_pred HHHHHHHHccCHHHHHHHHHHHH
Q 048117 188 VLSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 188 ~l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
.|+..|..-+++.+|.+++-..+
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhcc
Confidence 46666667777777766554443
No 372
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=50.39 E-value=2.7e+02 Score=27.70 Aligned_cols=116 Identities=10% Similarity=0.113 Sum_probs=78.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccC------CHHHHHHHHHHHHHcCCHHHHHHHHHH---H-HHcCCCccHHHHHHHHH
Q 048117 20 TLIDMYVKCGCLEGARRVFIEMEER------TVFTWSAMIQGLAIHGQAKEALTSFNK---M-IEIGIKPNGVTFIGLLH 89 (352)
Q Consensus 20 ~li~~~~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~---m-~~~g~~p~~~t~~~ll~ 89 (352)
+|..+|...|++..+.++++..... =...||.-|+.+.++|.++ -.++.+. . ++.-+.-|..||..++.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~-l~~~~~~~~~~lq~a~ln~d~~t~all~~ 111 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFE-LTDVLSNAKELLQQARLNGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 8999999999999999999987643 3467899999999999753 2222222 1 23346678999999998
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHH--hcCCHHHHHHHHHhCC
Q 048117 90 ACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS--RAGFLQEAYEFIRNMP 144 (352)
Q Consensus 90 a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~ 144 (352)
+..+.-+-..+.-++.++... +-|-+++.+. ..=.+++..-+.+++.
T Consensus 112 ~sln~t~~~l~~pvl~~~i~~--------s~ngv~di~~~~~v~s~~ev~limd~l~ 160 (1117)
T COG5108 112 ASLNPTQRQLGLPVLHELIHR--------SANGVIDILMHESVFSPEEVKLIMDQLN 160 (1117)
T ss_pred hhcChHhHHhccHHHHHHHHh--------hhhhHHHHHhhhccCCHHHHHHHHHhcC
Confidence 877766556666666666532 1222344333 2335677777777773
No 373
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=50.17 E-value=1.3e+02 Score=28.48 Aligned_cols=109 Identities=12% Similarity=0.102 Sum_probs=65.4
Q ss_pred HHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHH-HHHHhcCCHHHHHHHHHHHH
Q 048117 100 GRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKP-NGVVWGALL-GGCRVHKNIDLAEEASRQLD 176 (352)
Q Consensus 100 a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li-~~~~~~g~~~~a~~~~~~~~ 176 (352)
...+|..... ...-|+..|...+.-+-+.+.+.+.-.+|.+| ...| ++..|-... .-|-.+-+++.|..+|..-.
T Consensus 90 Iv~lyr~at~--rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 90 IVFLYRRATN--RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHH--hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 3445555443 44558888888887766777788888888888 3333 223343222 22444555888999988888
Q ss_pred hcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Q 048117 177 QLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVK 215 (352)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 215 (352)
+..|+.+..+....++ .+..+.++..+=...|..
T Consensus 168 R~npdsp~Lw~eyfrm-----EL~~~~Kl~~rr~~~g~~ 201 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFRM-----ELMYAEKLRNRREELGLD 201 (568)
T ss_pred hcCCCChHHHHHHHHH-----HHHHHHHHHHHHHHhccc
Confidence 8888877666544333 223344444444444443
No 374
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=49.89 E-value=1.6e+02 Score=25.69 Aligned_cols=84 Identities=14% Similarity=0.040 Sum_probs=55.8
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCcchHHHHHHHHHh-
Q 048117 87 LLHACGHMGWVDEGRRFFYSMTTEY-GIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM---PIKPNGVVWGALLGGCRV- 161 (352)
Q Consensus 87 ll~a~~~~g~~~~a~~~~~~m~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~~~~~- 161 (352)
=|+|++..+++.++....-+.-+.. .++| .+...-|-.|+|.+.+..++++-..- +-+-+...|.++..-|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 3789999999988877543332110 2333 34555566799999998887766554 333345568888777655
Q ss_pred ----cCCHHHHHHHH
Q 048117 162 ----HKNIDLAEEAS 172 (352)
Q Consensus 162 ----~g~~~~a~~~~ 172 (352)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 58888888876
No 375
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=49.39 E-value=99 Score=23.90 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=29.6
Q ss_pred HHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCH
Q 048117 70 NKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFL 133 (352)
Q Consensus 70 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~ 133 (352)
..+++.|++++..=. .++..+.+.+..-.|.++++.+.++ +...+..|--.-++.+...|-+
T Consensus 10 ~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 10 ERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCCE
Confidence 344455555444322 2444555554445566666666543 4444433333333555555543
No 376
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=49.22 E-value=1.2e+02 Score=23.32 Aligned_cols=49 Identities=8% Similarity=-0.020 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHh-cCCCCcc-hHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 164 NIDLAEEASRQLDQ-LDPLNNG-YHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 164 ~~~~a~~~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
++.++..+++.+.+ -.|.... ....|.-++.+.++++.+.++.+.+.+.
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 34556666666664 3332222 1223344566777777777777766553
No 377
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=49.14 E-value=2.5e+02 Score=27.03 Aligned_cols=23 Identities=30% Similarity=0.678 Sum_probs=18.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcc
Q 048117 20 TLIDMYVKCGCLEGARRVFIEME 42 (352)
Q Consensus 20 ~li~~~~~~g~~~~A~~~f~~m~ 42 (352)
.|+.-|.+++++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 56777888888888888887775
No 378
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=49.03 E-value=89 Score=21.76 Aligned_cols=43 Identities=14% Similarity=-0.001 Sum_probs=27.8
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048117 67 TSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTT 109 (352)
Q Consensus 67 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 109 (352)
++|+-.+..|+..|...|..+++...-.=..+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6666666666666666666666666666666666666666653
No 379
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=48.99 E-value=2.2e+02 Score=26.22 Aligned_cols=184 Identities=11% Similarity=0.107 Sum_probs=104.9
Q ss_pred cCCHHHHHHHHHhcccC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCccHHHHHHHHHHHhc----
Q 048117 28 CGCLEGARRVFIEMEER---------TVFTWSAMIQGLAIHGQAKEALTSFNKMI-EIGIKPNGVTFIGLLHACGH---- 93 (352)
Q Consensus 28 ~g~~~~A~~~f~~m~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~g~~p~~~t~~~ll~a~~~---- 93 (352)
.++++.|.+-+-...+. +......++..|...++|+.--+...-+. +.|. .......++.-+..
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgq--lk~ai~~Mvq~~~~y~~~ 102 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQ--LKQAIQSMVQQAMTYIDG 102 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHhccC
Confidence 45555555544443321 33456667777777888776666655553 3322 22223334433321
Q ss_pred cCCHHHHHHHHHHhH--HhcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHH------------H
Q 048117 94 MGWVDEGRRFFYSMT--TEYGIIPQ---IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGAL------------L 156 (352)
Q Consensus 94 ~g~~~~a~~~~~~m~--~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l------------i 156 (352)
..+.+.-..+.+-+. .+..+-.. ...=..|...+-.+|++++|..++.+.+++ ||.++ +
T Consensus 103 ~~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQm 178 (439)
T KOG1498|consen 103 TPDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQM 178 (439)
T ss_pred CCCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHH
Confidence 112222222222221 01111111 122234667777899999999999988643 55443 2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCC--CCc-----chHHHHHHHHHHccCHHHHHHHHHHHHhcCCccC
Q 048117 157 GGCRVHKNIDLAEEASRQLDQLDP--LNN-----GYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKT 217 (352)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~--~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 217 (352)
+.|...+|+-.|.-+-..+..... ++. .+|..++......+.+=.+-+.|+..-+.|....
T Consensus 179 rKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~ 246 (439)
T KOG1498|consen 179 RLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKE 246 (439)
T ss_pred HHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhccccccc
Confidence 347777888888877777765222 211 3677888888888889899999998877665543
No 380
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=48.27 E-value=46 Score=24.33 Aligned_cols=46 Identities=15% Similarity=0.098 Sum_probs=30.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCH
Q 048117 52 MIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWV 97 (352)
Q Consensus 52 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 97 (352)
++..+...+..-.|.++++++.+.+..++..|.--.|+.+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4555555566667777777777776666777666666666666654
No 381
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.93 E-value=31 Score=34.83 Aligned_cols=95 Identities=18% Similarity=0.225 Sum_probs=56.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 048117 59 HGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138 (352)
Q Consensus 59 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 138 (352)
+.++++.+.+.+.-.--|. ++|.-+.+.|-.+-|+.+.+.=..+++ ....+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvGq--------aiIaYLqKkgypeiAL~FVkD~~tRF~-------------LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVGQ--------AIIAYLQKKGYPEIALHFVKDERTRFE-------------LALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCcccH--------HHHHHHHhcCCcceeeeeecCcchhee-------------eehhcCCHHHHHH
Confidence 4556666655544322221 344445566666666655443322221 2346778888877
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048117 139 FIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177 (352)
Q Consensus 139 ~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 177 (352)
.-++++ +..+|..|.......|+.+-|+..|+..+.
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 777765 456777777777777777777777776654
No 382
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=47.92 E-value=2.1e+02 Score=25.76 Aligned_cols=83 Identities=14% Similarity=0.203 Sum_probs=43.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc---CCCccHHHHH--HHHHHHhccCCHHHHHHHHHHhHHh----cCCCCCh-hhHHH
Q 048117 53 IQGLAIHGQAKEALTSFNKMIEI---GIKPNGVTFI--GLLHACGHMGWVDEGRRFFYSMTTE----YGIIPQI-EHYGC 122 (352)
Q Consensus 53 i~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~----~g~~~~~-~~~~~ 122 (352)
+...-+.++.++|++.++++.+. --.|+.+.|. ....++...|++.++.+++++.... .+++|++ ..|+.
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ 161 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYS 161 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHH
Confidence 33344445677777777776532 2245555443 3344555667777777666665530 2556654 23555
Q ss_pred HHHHHHh-cCCHHH
Q 048117 123 MVDLLSR-AGFLQE 135 (352)
Q Consensus 123 li~~~~~-~g~~~~ 135 (352)
+-.-|.+ .|++..
T Consensus 162 lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 162 LSSQYYKKIGDFAS 175 (380)
T ss_pred HHHHHHHHHHhHHH
Confidence 5544443 344443
No 383
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=47.63 E-value=2e+02 Score=25.30 Aligned_cols=106 Identities=12% Similarity=0.088 Sum_probs=50.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhc
Q 048117 51 AMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130 (352)
Q Consensus 51 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~ 130 (352)
.++.-.-+.++..+.++.++.+.. ...-...++.....|++..|.++..+..+- +. +...|+++=..-.+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~--l~-~l~~~~c~~~L~~~- 172 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQL--LE-ELKGYSCVRHLSSQ- 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--HH-hcccchHHHHHhHH-
Confidence 344444455555555555555532 122233455555667777777776666532 11 11222222221111
Q ss_pred CCHHHHHH--------HHHhCCCCCCcchHHHHHHHHHhcCCHHHH
Q 048117 131 GFLQEAYE--------FIRNMPIKPNGVVWGALLGGCRVHKNIDLA 168 (352)
Q Consensus 131 g~~~~A~~--------~~~~m~~~p~~~~~~~li~~~~~~g~~~~a 168 (352)
+++-.. .|.++-..-|+..|..++.||.-.|+...+
T Consensus 173 --L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~ 216 (291)
T PF10475_consen 173 --LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSA 216 (291)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHH
Confidence 122222 222222234667788888888777766443
No 384
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=47.53 E-value=1.2e+02 Score=27.17 Aligned_cols=72 Identities=13% Similarity=0.162 Sum_probs=45.8
Q ss_pred HHHHH--HHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 048117 20 TLIDM--YVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACG 92 (352)
Q Consensus 20 ~li~~--~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 92 (352)
.|++. |.|..++-...++++.+..+|...-++++.+.. .|+.+.-...|++|...|+.++......+...++
T Consensus 279 ~LmdfI~~lK~r~~y~~~kfvd~L~r~d~e~~~~L~~ai~-~~~~~~~Ysa~R~~k~~g~~~~~~~v~~lae~l~ 352 (354)
T TIGR01914 279 VLMDFIAYLKARDFYSWPKFVDFLARRDPEISLQLTDAIL-NGDEEAFYTALRELKKSGVRYDPEQVDALAEILA 352 (354)
T ss_pred HHHHHHHHHhhhhhcchHHHHHHHhccChHHHHHHHHHHH-cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Confidence 44443 334545555667777776667666666766665 4555556666777777777777777766665543
No 385
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=47.49 E-value=1.3e+02 Score=23.30 Aligned_cols=76 Identities=13% Similarity=0.160 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccC---------CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCccHHHHHHH
Q 048117 18 CNTLIDMYVKCGCLEGARRVFIEMEER---------TVFTWSAMIQGLAIHGQ-AKEALTSFNKMIEIGIKPNGVTFIGL 87 (352)
Q Consensus 18 ~~~li~~~~~~g~~~~A~~~f~~m~~~---------~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~l 87 (352)
.|.++.-.+..+...-...+++.+..- |-.+|++++.+.++..- --.+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 344444444445555555555444321 23445555555544333 23445555555555555555555555
Q ss_pred HHHHhc
Q 048117 88 LHACGH 93 (352)
Q Consensus 88 l~a~~~ 93 (352)
|++|.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 555444
No 386
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=46.76 E-value=95 Score=21.45 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=25.9
Q ss_pred HcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHH
Q 048117 27 KCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEA 65 (352)
Q Consensus 27 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 65 (352)
..-+.+.|.++++..+.++..+|.+..+++-..|...-|
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 344566677777777777777777777777766655443
No 387
>PRK09687 putative lyase; Provisional
Probab=46.27 E-value=2e+02 Score=25.08 Aligned_cols=81 Identities=14% Similarity=0.045 Sum_probs=40.5
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCccHHHHHHH
Q 048117 12 RRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA----KEALTSFNKMIEIGIKPNGVTFIGL 87 (352)
Q Consensus 12 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~p~~~t~~~l 87 (352)
.+|..+.-..+..+.+.|..+-...+..-...+|...=...+.++++.|.. .+++.++..+... .|+...-.+.
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 455556666666666666544444444434445555555555566665542 3455555555221 2444444444
Q ss_pred HHHHhcc
Q 048117 88 LHACGHM 94 (352)
Q Consensus 88 l~a~~~~ 94 (352)
+.+++..
T Consensus 112 ~~aLG~~ 118 (280)
T PRK09687 112 INATGHR 118 (280)
T ss_pred HHHHhcc
Confidence 4444443
No 388
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=45.47 E-value=32 Score=30.15 Aligned_cols=36 Identities=8% Similarity=0.036 Sum_probs=23.8
Q ss_pred CCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Q 048117 180 PLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVK 215 (352)
Q Consensus 180 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 215 (352)
|+...+|+..|..-.+.|++++|+++.++.++.|+.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 344455666666667777777777777777776664
No 389
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=45.36 E-value=2.8e+02 Score=26.47 Aligned_cols=163 Identities=11% Similarity=0.156 Sum_probs=100.9
Q ss_pred CCCCCHhHHHHHHHHHHHcC-CHHH-HHHHHHhcc----cCCHHHHHHHHHHHHHcCC-H-HHHHHHHHHHHHcCCCccH
Q 048117 10 GFRRNIRVCNTLIDMYVKCG-CLEG-ARRVFIEME----ERTVFTWSAMIQGLAIHGQ-A-KEALTSFNKMIEIGIKPNG 81 (352)
Q Consensus 10 g~~~~~~~~~~li~~~~~~g-~~~~-A~~~f~~m~----~~~~~~~~~li~~~~~~g~-~-~~A~~l~~~m~~~g~~p~~ 81 (352)
++.-|...|-.=+....+.. |.+- -.++|...+ .+-...|++.. .|+ + ...+.++-.....-..|+.
T Consensus 385 ~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~~~~~ 459 (568)
T KOG2396|consen 385 LFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVIGADS 459 (568)
T ss_pred HhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhcCCce
Confidence 44555666655555554322 2221 122333332 34456666655 222 1 1222233333333356787
Q ss_pred HHHH-HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHH---hcCCHHHHHHHHHhC--CCCCCcchHHHH
Q 048117 82 VTFI-GLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLS---RAGFLQEAYEFIRNM--PIKPNGVVWGAL 155 (352)
Q Consensus 82 ~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m--~~~p~~~~~~~l 155 (352)
.|+. .++.-+-+.|-..+|...+..+.. -.+|+...|.-+|..=. .|| +.-+...++.| ....|+..|--.
T Consensus 460 ~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y 536 (568)
T KOG2396|consen 460 VTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDY 536 (568)
T ss_pred eehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHH
Confidence 7764 677888889999999999998873 44667788888886433 344 66778888887 222578889888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh-cCC
Q 048117 156 LGGCRVHKNIDLAEEASRQLDQ-LDP 180 (352)
Q Consensus 156 i~~~~~~g~~~~a~~~~~~~~~-~~~ 180 (352)
+.--..+|..+.+-.++.+..+ +.|
T Consensus 537 ~~~e~~~g~~en~~~~~~ra~ktl~~ 562 (568)
T KOG2396|consen 537 MKEELPLGRPENCGQIYWRAMKTLQG 562 (568)
T ss_pred HHhhccCCCcccccHHHHHHHHhhCh
Confidence 8888899999998888887665 554
No 390
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=44.85 E-value=1.3e+02 Score=24.44 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhHHhcCCCCC-h-----hhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC
Q 048117 97 VDEGRRFFYSMTTEYGIIPQ-I-----EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHK 163 (352)
Q Consensus 97 ~~~a~~~~~~m~~~~g~~~~-~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g 163 (352)
++.|..+++.+.++...+-+ . ..--..+-.|.+.|.+++|.++++..--.|+......-+....+.+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHHcc
Confidence 56677777777754322101 0 1122344567788888888888888733566655555444444333
No 391
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=44.18 E-value=38 Score=31.13 Aligned_cols=131 Identities=9% Similarity=-0.026 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH----HcCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHhHH---hcCC-CCCh
Q 048117 47 FTWSAMIQGLAIHGQAKEALTSFNKMI----EIGIKP-NGVTFIGLLHACGHMGWVDEGRRFFYSMTT---EYGI-IPQI 117 (352)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~g~-~~~~ 117 (352)
.+|..|-+.|.-.|+++.|+..-++-. +-|-+. ....+..+-+++.-.|.++.|.+.|+.-.. +.|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 356666666777788999987655432 333222 234677888899999999999998875431 1121 2235
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048117 118 EHYGCMVDLLSRAGFLQEAYEFIRNM-------P-IKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177 (352)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 177 (352)
...-+|.+.|.-...+++|..++.+- + .--....|.+|-.++...|..++|..+.+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 66778888998888899988776543 1 111356778899999999999999888776554
No 392
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=43.76 E-value=1.3e+02 Score=29.63 Aligned_cols=31 Identities=29% Similarity=0.549 Sum_probs=21.1
Q ss_pred hhhHHHHHHH-----HHhcCCHHHHHHHHHhCCCCC
Q 048117 117 IEHYGCMVDL-----LSRAGFLQEAYEFIRNMPIKP 147 (352)
Q Consensus 117 ~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~p 147 (352)
..|+..|++. +...|++++|++.++++++-|
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 3455555543 357899999999999998888
No 393
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=43.69 E-value=41 Score=22.54 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=29.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCC
Q 048117 57 AIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGW 96 (352)
Q Consensus 57 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 96 (352)
...|+.+.+.+++++..+.|..|.......+..+..+.|+
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3478888999999999988888888877777766655443
No 394
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=43.67 E-value=42 Score=24.82 Aligned_cols=48 Identities=17% Similarity=0.129 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCH
Q 048117 50 SAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWV 97 (352)
Q Consensus 50 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 97 (352)
.+++..+.+.+.+-.|.++++.|.+.|..++..|.--.|+.+.+.|-+
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 356667777777778888888888887777777766666666666643
No 395
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=43.64 E-value=32 Score=23.46 Aligned_cols=29 Identities=21% Similarity=0.458 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHcCcccCCccc
Q 048117 240 PQAEKIFQMWEKLLDGMKLKGYIPNTSVV 268 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~m~~~g~~p~~~t~ 268 (352)
+..-++++.+++-.++++..|+.||...+
T Consensus 5 ~~li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 5 GDLIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 45567778888889999999999998654
No 396
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=43.53 E-value=1.8e+02 Score=23.85 Aligned_cols=80 Identities=9% Similarity=0.094 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc-----------CCCC----c
Q 048117 120 YGCMVDLLSRAGFLQEAYEF-IRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQL-----------DPLN----N 183 (352)
Q Consensus 120 ~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----------~~~~----~ 183 (352)
|......-++.-.-+++-+. +.++| -+++-.|.+.-++.++.++++.+.+. +|.. -
T Consensus 110 FceFAetV~k~~q~~e~dK~~LGRiG--------iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrC 181 (233)
T PF14669_consen 110 FCEFAETVCKDPQNDEVDKTLLGRIG--------ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRC 181 (233)
T ss_pred HHHHHHHHhcCCccchhhhhhhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchh
Confidence 55555555555444444322 22222 24566677777888888888877542 1111 1
Q ss_pred chHHHHHHHHHHccCHHHHHHHHH
Q 048117 184 GYHVVLSNIYAEAERWEDVARVRK 207 (352)
Q Consensus 184 ~~~~~l~~~~~~~g~~~~a~~~~~ 207 (352)
...+.....+.++|.++.|..+++
T Consensus 182 qivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 182 QIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred hhHHHHHHHHHHcCCchHHHHHHh
Confidence 234566788999999999999987
No 397
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=43.35 E-value=90 Score=29.25 Aligned_cols=180 Identities=16% Similarity=0.134 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCcchHHHHHHHHH--hcCCHHHHHHHH
Q 048117 96 WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP-IKPNGVVWGALLGGCR--VHKNIDLAEEAS 172 (352)
Q Consensus 96 ~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~li~~~~--~~g~~~~a~~~~ 172 (352)
.+++-.++++.+.+. | . ......-|+.|.|.+++++|.+.+++-. ..+ ++|++|= .+| ++...++.
T Consensus 69 ~~~e~i~lL~~l~~~-g-~--ad~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~------s~LNGfP~VnhG-v~~~R~l~ 137 (480)
T TIGR01503 69 LLDEHIELLRTLQEE-G-G--ADFLPSTIDAYTRQNRYDEAAVGIKESIKAGR------SLLNGFPGVNHG-VKGCRKVL 137 (480)
T ss_pred cHHHHHHHHHHHHHc-c-C--CCccceeeecccccccHHHHHHHHHhhhhcCc------ccccCCCccccc-HHHHHHHH
Confidence 355556666655532 2 1 1233445666667777777666666541 111 2333331 111 33344443
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEEeCCCCchhHHHHHHHHH--
Q 048117 173 RQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKTPGWSSITVDGVVHEFVAGDETHPQAEKIFQMWE-- 250 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 250 (352)
+... .|.. .+.|.. +++.+++-+...|+....+- -+ +|...|.+.-..++.+..|.
T Consensus 138 ~~v~--~PvQ-----------vRHGtp-DarlL~e~~~a~G~~a~EGG-------~I-SYnlPYsK~vpLe~si~~Wqyv 195 (480)
T TIGR01503 138 EAVN--LPLQ-----------IRHGTP-DARLLAEIILAGGFTSFEGG-------GI-SYNIPYAKNVTLEKSLEDWQYC 195 (480)
T ss_pred HhCC--CCee-----------ccCCCC-cHHHHHHHHHHcCCCccCCC-------cc-eeccccCCCCCHHHHHHHHHHH
Confidence 3321 1111 233333 35666777777776532211 11 23444554444556555554
Q ss_pred -HHHHHHHHcCcccCCccccc---ccchhHHhhhhhhhhHHHHHHHHhcCCCCCCcEEEEeccccccccc
Q 048117 251 -KLLDGMKLKGYIPNTSVVLL---DIEEKEKEKFLYRHSEKLALTFGLMNTPPGTPIRIMKNLRVCEDCH 316 (352)
Q Consensus 251 -~l~~~m~~~g~~p~~~t~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 316 (352)
++...-.+.|+..|..++-. .+.+-+-...+..-.-.++...|+. +|.=.|..||+..
T Consensus 196 dRL~g~y~e~gv~InrE~FGpLtgtLvPPsisiav~ilE~Lla~eqGVk--------sisvgy~Q~Gn~~ 257 (480)
T TIGR01503 196 DRLVGFYEEQGVHINREPFGPLTGTLVPPSISNAIGIIEGLLAAEQGVK--------NITVGYGQVGNLT 257 (480)
T ss_pred HHHHHHHHhcCceeccccccCCCCCccChHHHHHHHHHHHHHHHHcCCe--------EEEeccccCCChH
Confidence 56666667898888887543 2333333333333333445555553 4555678888765
No 398
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.89 E-value=3.1e+02 Score=26.19 Aligned_cols=186 Identities=13% Similarity=0.065 Sum_probs=108.3
Q ss_pred HHHHHHHHH-c-CCHHHHHHHHHhcccCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcc--HH-
Q 048117 19 NTLIDMYVK-C-GCLEGARRVFIEMEERTV----------FTWSAMIQGLAIHGQAKEALTSFNKMIEIG-IKPN--GV- 82 (352)
Q Consensus 19 ~~li~~~~~-~-g~~~~A~~~f~~m~~~~~----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~- 82 (352)
.++..+|.+ + .-.|+|....++.++.|. .+...++-+-.-.|++.+|++-..+|++.- -.|. ..
T Consensus 284 hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr 363 (629)
T KOG2300|consen 284 HSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLR 363 (629)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHH
Confidence 344445543 1 234556666666665441 233334444455799999999999997532 2333 11
Q ss_pred ----HHHHHHHHH-hccCCHHHHHHHHHHhHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHH
Q 048117 83 ----TFIGLLHAC-GHMGWVDEGRRFFYSMTTEYGIIPQ--IEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGAL 155 (352)
Q Consensus 83 ----t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 155 (352)
....++..| +..+.++.|...|....+. --.-| ...-..+...|.+.|+-++-.++++.++ .|+..++++-
T Consensus 364 ~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~-t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq 441 (629)
T KOG2300|consen 364 AHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL-TESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIG-PLNTNSLSSQ 441 (629)
T ss_pred HhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh-hhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcC-CCCCCcchHH
Confidence 223344444 4568899999888776643 22222 3334456678999999999889998885 2344444331
Q ss_pred -HH-------H--HHhcCCHHHHHHHHHHHHhcC-C-CC----cchHHHHHHHHHHccCHHHHHHHH
Q 048117 156 -LG-------G--CRVHKNIDLAEEASRQLDQLD-P-LN----NGYHVVLSNIYAEAERWEDVARVR 206 (352)
Q Consensus 156 -i~-------~--~~~~g~~~~a~~~~~~~~~~~-~-~~----~~~~~~l~~~~~~~g~~~~a~~~~ 206 (352)
+. + ....+++.+|.++..+-.+.. . +. ......|...+...|+-.++.+..
T Consensus 442 ~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmv 508 (629)
T KOG2300|consen 442 RLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMV 508 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhcc
Confidence 11 1 245678999999998876632 1 11 112234555566777777766543
No 399
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=42.17 E-value=86 Score=22.66 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=12.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccC
Q 048117 20 TLIDMYVKCGCLEGARRVFIEMEER 44 (352)
Q Consensus 20 ~li~~~~~~g~~~~A~~~f~~m~~~ 44 (352)
.++.-|...|+.++|..-+.++..|
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~~~ 31 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELKLP 31 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT-G
T ss_pred HHHHHHhcCCCHHHHHHHHHHhCCC
Confidence 3444555556666666655555443
No 400
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=41.63 E-value=1.3e+02 Score=21.72 Aligned_cols=46 Identities=22% Similarity=0.087 Sum_probs=23.8
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 048117 127 LSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175 (352)
Q Consensus 127 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 175 (352)
+...|++++|..+.+.+. -||...|-+|-.. +.|..+....-+.++
T Consensus 49 LmNrG~Yq~Al~l~~~~~-~pdlepw~ALce~--rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKLC-YPDLEPWLALCEW--RLGLGSALESRLNRL 94 (115)
T ss_pred HHccchHHHHHHhcCCCC-CchHHHHHHHHHH--hhccHHHHHHHHHHH
Confidence 445666666666666664 4566666554432 344444333333333
No 401
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=40.79 E-value=1.7e+02 Score=22.61 Aligned_cols=64 Identities=13% Similarity=-0.016 Sum_probs=44.7
Q ss_pred CHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccC
Q 048117 132 FLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAER 198 (352)
Q Consensus 132 ~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 198 (352)
--+.|.++.+-|| +....-.........|++.-|.++.+.+...+|++...-....++|.+.|.
T Consensus 56 p~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 56 PEEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3457888888886 223333455667779999999999999999999888777777777766554
No 402
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=39.29 E-value=79 Score=26.53 Aligned_cols=88 Identities=19% Similarity=0.046 Sum_probs=49.3
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH-HHHHHHHHccCHHHHH
Q 048117 127 LSRAGFLQEAYEFIRNM-PIKPNG-VVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHV-VLSNIYAEAERWEDVA 203 (352)
Q Consensus 127 ~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~ 203 (352)
|-..|-++-|..=|.+. .+.|+. ..||-+---+...|+++.|.+.|+...+++|...-+.. -=|. +--.|+++-|.
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq 153 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQ 153 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhH
Confidence 33445555554444443 455543 34665555567778888888888877777765432221 1112 22457777777
Q ss_pred HHHHHHHhcCCc
Q 048117 204 RVRKLMRNLGVK 215 (352)
Q Consensus 204 ~~~~~m~~~g~~ 215 (352)
+=|...-+.+..
T Consensus 154 ~d~~~fYQ~D~~ 165 (297)
T COG4785 154 DDLLAFYQDDPN 165 (297)
T ss_pred HHHHHHHhcCCC
Confidence 766666554443
No 403
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=38.84 E-value=3.8e+02 Score=26.12 Aligned_cols=193 Identities=11% Similarity=0.051 Sum_probs=99.5
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhcccCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccH-HHHHHHHHHH
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFIEMEERT-VFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNG-VTFIGLLHAC 91 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~ 91 (352)
....++.|+..+... +.+.-.++++++.. . ...|..++++....|-.....-+.+.+....+.+.. ......+-..
T Consensus 309 ~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~ 386 (574)
T smart00638 309 AAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHT 386 (574)
T ss_pred hHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 445666777766543 45666777777665 4 688999999999999775555555555554454322 2222222222
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCh-------hhHHHHHHHHHhcCCH------HHHHHHHHhC----CCCCCcchHHH
Q 048117 92 GHMGWVDEGRRFFYSMTTEYGIIPQI-------EHYGCMVDLLSRAGFL------QEAYEFIRNM----PIKPNGVVWGA 154 (352)
Q Consensus 92 ~~~g~~~~a~~~~~~m~~~~g~~~~~-------~~~~~li~~~~~~g~~------~~A~~~~~~m----~~~p~~~~~~~ 154 (352)
...-..+-...++ ++.+.....+.. .+|.+|+.-+|....- ++....+.+. .-+-|..--..
T Consensus 387 ~~~Pt~~~l~~l~-~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 465 (574)
T smart00638 387 ARYPTEEILKALF-ELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQL 465 (574)
T ss_pred hhcCCHHHHHHHH-HHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheee
Confidence 2333444444444 344333455553 4566666655654431 3333333322 11112323345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHc--cCHHHHHHHHHHH
Q 048117 155 LLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEA--ERWEDVARVRKLM 209 (352)
Q Consensus 155 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~m 209 (352)
.|.++...|.......+...+....+.+...-...+.++.+. ...+.+..++-.+
T Consensus 466 ~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i 522 (574)
T smart00638 466 YLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPI 522 (574)
T ss_pred HHHhhhccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 788888888766554444443322222223334555555533 3555666554443
No 404
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=37.55 E-value=1.9e+02 Score=22.38 Aligned_cols=55 Identities=15% Similarity=-0.063 Sum_probs=34.9
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC---CCCCcchHHHHHHHHHhcCCH
Q 048117 110 EYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMP---IKPNGVVWGALLGGCRVHKNI 165 (352)
Q Consensus 110 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~p~~~~~~~li~~~~~~g~~ 165 (352)
+.|++++.. -..++..+...+..-.|.++++++. ...+..|.-..+..+...|-+
T Consensus 14 ~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 14 EAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 457776543 5567777777777778888888882 122344544456777777754
No 405
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=36.94 E-value=1.6e+02 Score=25.02 Aligned_cols=57 Identities=16% Similarity=0.015 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCC--------CCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 048117 119 HYGCMVDLLSRAGFLQEAYEFIRNMP--------IKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175 (352)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 175 (352)
..--|..-|.+.|++++|.++|+.+. ..+...+...+..++.+.|+.+....+.-++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34457778999999999999999981 1234455667778888999998877765554
No 406
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=36.77 E-value=1.2e+02 Score=21.82 Aligned_cols=76 Identities=12% Similarity=0.140 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcc--CCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHH
Q 048117 50 SAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHM--GWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL 127 (352)
Q Consensus 50 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~ 127 (352)
..++..|...|+.++|..-++++...... ..+.+ .++..+... ..-+....++..+.+. +..+....-.++-..+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~~-~~vv~-~~l~~~le~~~~~r~~~~~Ll~~L~~~-~~~~~~~~~~gf~~~l 82 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQH-HEVVK-VILECALEEKKSYREYYSKLLSHLCKR-KLISKEQFQEGFEDLL 82 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGGH-HHHHH-HHHHHHHTSSHHHHHHHHHHHHHHHHT-TSS-HHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCccH-HHHHH-HHHHHHhhccHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHH
Confidence 45677888889999999999887432111 22233 344444433 2334566667777643 5544433333333333
Q ss_pred H
Q 048117 128 S 128 (352)
Q Consensus 128 ~ 128 (352)
.
T Consensus 83 ~ 83 (113)
T PF02847_consen 83 E 83 (113)
T ss_dssp H
T ss_pred h
Confidence 3
No 407
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=36.29 E-value=2.8e+02 Score=23.90 Aligned_cols=156 Identities=14% Similarity=0.103 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH----HHhccCC-HHHHHHHHHHhHHhcCCCCChhhHH
Q 048117 47 FTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLH----ACGHMGW-VDEGRRFFYSMTTEYGIIPQIEHYG 121 (352)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~----a~~~~g~-~~~a~~~~~~m~~~~g~~~~~~~~~ 121 (352)
.-.+.+|..+.+.+...+|+.+.+.+.... -=....-.++. ....... .......+.....- +.. ...|-
T Consensus 83 l~L~~iL~~lL~~~~~~~a~~i~~~y~~l~--~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~l--l~~-f~~~l 157 (258)
T PF07064_consen 83 LFLHHILRHLLRRNLDEEALEIASKYRSLP--YFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISL--LQE-FPEYL 157 (258)
T ss_pred echHHHHHHHHhcCCcHHHHHHHHHhccCC--CcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHH--HHc-CcchH
Confidence 345677888888888888888888776421 11222222222 2222100 01111112212110 000 11244
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-------chHHHHHHHHH
Q 048117 122 CMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNN-------GYHVVLSNIYA 194 (352)
Q Consensus 122 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~ 194 (352)
-++-.|.|.-+...=..+|+..| .|. .++.-|.+.|+++.|-.++--+...+..+. ....-|+.+..
T Consensus 158 ~Ivv~C~RKtE~~~W~~LF~~lg-~P~-----dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~ 231 (258)
T PF07064_consen 158 EIVVNCARKTEVRYWPYLFDYLG-SPR-----DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMAL 231 (258)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcC-CHH-----HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHH
Confidence 44444555555555566777665 442 688899999999999998887766443322 22335778888
Q ss_pred HccCHHHHHHHHHHHHhcC
Q 048117 195 EAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 195 ~~g~~~~a~~~~~~m~~~g 213 (352)
..++|+-+.++.+=++..+
T Consensus 232 ~~~~w~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 232 ESGDWDLCFELVRFLKALD 250 (258)
T ss_pred hcccHHHHHHHHHHHHHhC
Confidence 9999999999988777543
No 408
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=35.63 E-value=4.3e+02 Score=25.76 Aligned_cols=130 Identities=8% Similarity=0.123 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHH-HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHH
Q 048117 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTF-IGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCM 123 (352)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~l 123 (352)
+-..|+++|.---.....+.+...+..+... -|...-| -....-=.+.|..+.+.++|++-++ +++.+...|...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~--aip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ--AIPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hhhhHHHHHHHH
Confidence 4466777776655555566667777777643 4655543 2233333567888999999998884 888787777776
Q ss_pred HHHHH-hcCCHHHHHHHHHhC----CCC-CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048117 124 VDLLS-RAGFLQEAYEFIRNM----PIK-PNGVVWGALLGGCRVHKNIDLAEEASRQLDQL 178 (352)
Q Consensus 124 i~~~~-~~g~~~~A~~~~~~m----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 178 (352)
..-+. ..|+.+...+.|+.. |.. .....|...|.--...++......+++++.+.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 65544 456777777777776 322 25567888888888888888888898888763
No 409
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.62 E-value=4e+02 Score=25.46 Aligned_cols=58 Identities=5% Similarity=-0.028 Sum_probs=30.5
Q ss_pred HHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHH
Q 048117 99 EGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM-PIKPNGVVWGALLGG 158 (352)
Q Consensus 99 ~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~ 158 (352)
+..+.+.......|+..+......++. ...|++..|+.++++. .......++..+...
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~ 242 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKM 242 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence 344444444444466666655555443 3457888888888764 111223455444433
No 410
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=35.18 E-value=1.8e+02 Score=21.21 Aligned_cols=25 Identities=28% Similarity=0.595 Sum_probs=18.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC
Q 048117 119 HYGCMVDLLSRAGFLQEAYEFIRNM 143 (352)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~~~~~m 143 (352)
-|..|+..|...|..++|++++.+.
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l 65 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKL 65 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHH
Confidence 4777777777777777777777776
No 411
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.63 E-value=4.4e+02 Score=25.65 Aligned_cols=179 Identities=14% Similarity=0.082 Sum_probs=103.1
Q ss_pred HHHHHHHHHhcccC-CHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHH-------cCCCccHHHHHHHHHHHhccC--
Q 048117 31 LEGARRVFIEMEER-TVFTWSAMIQG-----LAIHGQAKEALTSFNKMIE-------IGIKPNGVTFIGLLHACGHMG-- 95 (352)
Q Consensus 31 ~~~A~~~f~~m~~~-~~~~~~~li~~-----~~~~g~~~~A~~l~~~m~~-------~g~~p~~~t~~~ll~a~~~~g-- 95 (352)
...|.+.|+...+. ++..-..+... +....+.+.|+.+|+.+.+ .|. .....-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhcCCCC
Confidence 45677777776654 44333333332 4456789999999999876 552 224444555565533
Q ss_pred ---CHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHhCCC--CCCcchHHHHHHHHH--hcCCHHH
Q 048117 96 ---WVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR-AGFLQEAYEFIRNMPI--KPNGVVWGALLGGCR--VHKNIDL 167 (352)
Q Consensus 96 ---~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~--~p~~~~~~~li~~~~--~~g~~~~ 167 (352)
+.+.|..++.... +.| .|+....-..+..... -.+...|.++|..... .+...-+-+++-... ...+.+.
T Consensus 305 ~~~d~~~A~~~~~~aA-~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAA-ELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHH-hcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHH
Confidence 5677888887666 334 3444333333333233 2457789999988721 222222322222222 3347888
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Q 048117 168 AEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVK 215 (352)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 215 (352)
|..++.+....+......-......+.. +.++.+.-.+..+.+.|..
T Consensus 383 A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 383 AFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 8888888877664322222334444444 7888887777777776654
No 412
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=34.57 E-value=1.6e+02 Score=20.58 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCH
Q 048117 29 GCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQA 62 (352)
Q Consensus 29 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~ 62 (352)
-+.+.+.++++.++.++..+|..+..++-..|..
T Consensus 48 t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 48 TSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred CcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 4566777777777777777777777777655543
No 413
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=34.30 E-value=2.8e+02 Score=23.33 Aligned_cols=91 Identities=23% Similarity=0.243 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---cHHHHH--HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHH
Q 048117 49 WSAMIQGLAIHGQAKEALTSFNKMIEIGIKP---NGVTFI--GLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCM 123 (352)
Q Consensus 49 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~l 123 (352)
.|.|+--|.....+.+|.+.|.. +.|+.| |..++. .-|......|+++.|.+...+...+ -+..|...+--|
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~L 105 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHL 105 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHH
Confidence 44444444444444445454433 344444 222222 2344445666666666666555432 233332222221
Q ss_pred HH----HHHhcCCHHHHHHHHHh
Q 048117 124 VD----LLSRAGFLQEAYEFIRN 142 (352)
Q Consensus 124 i~----~~~~~g~~~~A~~~~~~ 142 (352)
.. =+.|.|..++|+++++.
T Consensus 106 q~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 106 QQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Confidence 11 12455666666666654
No 414
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.80 E-value=4.4e+02 Score=25.42 Aligned_cols=31 Identities=10% Similarity=0.061 Sum_probs=14.9
Q ss_pred HhCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHh
Q 048117 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIE 40 (352)
Q Consensus 8 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 40 (352)
+.|+..+......++... .|++..|..++++
T Consensus 193 ~egi~~~~~al~~ia~~s--~GslR~al~lLdq 223 (509)
T PRK14958 193 EENVEFENAALDLLARAA--NGSVRDALSLLDQ 223 (509)
T ss_pred HcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHH
Confidence 345544444444443332 3666666665554
No 415
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=33.67 E-value=2e+02 Score=21.50 Aligned_cols=42 Identities=21% Similarity=0.352 Sum_probs=19.5
Q ss_pred HHHHHHHHhHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHH
Q 048117 99 EGRRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGFLQEAYEFIR 141 (352)
Q Consensus 99 ~a~~~~~~m~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 141 (352)
.+.++|..|..+ |+-.. +.-|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444555555532 43222 3344455555555555555555554
No 416
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=33.46 E-value=3.6e+02 Score=24.26 Aligned_cols=17 Identities=0% Similarity=0.139 Sum_probs=9.7
Q ss_pred CCHHHHHHHHHhcccCC
Q 048117 29 GCLEGARRVFIEMEERT 45 (352)
Q Consensus 29 g~~~~A~~~f~~m~~~~ 45 (352)
++.+....+++.+++.+
T Consensus 36 ~~~~~~e~l~~~Ird~~ 52 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDED 52 (393)
T ss_pred cCHHHHHHHHHHHHhcc
Confidence 35555566666666543
No 417
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.33 E-value=2.3e+02 Score=27.63 Aligned_cols=147 Identities=13% Similarity=0.033 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHcCCCccHH-HHHHHHHH-HhccCCHHHHHHHHHHhHHh------cCCCCChhhHHHHHHHHHhcC--
Q 048117 62 AKEALTSFNKMIEIGIKPNGV-TFIGLLHA-CGHMGWVDEGRRFFYSMTTE------YGIIPQIEHYGCMVDLLSRAG-- 131 (352)
Q Consensus 62 ~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a-~~~~g~~~~a~~~~~~m~~~------~g~~~~~~~~~~li~~~~~~g-- 131 (352)
..+|.++++.....|..-... .=.....+ +....+++.|...++..... .| +.....-+..+|.+-.
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 356777777666555322211 11122233 44556777777777766530 13 2334455555565533
Q ss_pred ---CHHHHHHHHHhCC--CCCCcchHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH----HccCHHH
Q 048117 132 ---FLQEAYEFIRNMP--IKPNGVVWGALLGGCRV-HKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYA----EAERWED 201 (352)
Q Consensus 132 ---~~~~A~~~~~~m~--~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~ 201 (352)
+.+.|+.++.... -.|+....-..+--... ..+...|.++|....+.+-..... .+..+|. -..+.+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~--~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIY--RLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHH--HHHHHHHhCCCcCCCHHH
Confidence 4455777776651 12333322222211111 234567777777766554433222 2222221 2335677
Q ss_pred HHHHHHHHHhcC
Q 048117 202 VARVRKLMRNLG 213 (352)
Q Consensus 202 a~~~~~~m~~~g 213 (352)
|...+++..++|
T Consensus 383 A~~~~k~aA~~g 394 (552)
T KOG1550|consen 383 AFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHcc
Confidence 777777777777
No 418
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=33.23 E-value=1.5e+02 Score=20.72 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=23.0
Q ss_pred hcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 177 QLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
...|.+...-..+...+...|++++|.+.+-.+.+..
T Consensus 16 a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 16 AANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3566666666666677777777777777777666543
No 419
>PRK02287 hypothetical protein; Provisional
Probab=33.17 E-value=2.5e+02 Score=22.44 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=11.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC
Q 048117 119 HYGCMVDLLSRAGFLQEAYEFIRNM 143 (352)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~~~~~m 143 (352)
+..++..++.-.|..+.|.+++..-
T Consensus 109 ~vEAlAaaLyI~G~~~~A~~ll~~F 133 (171)
T PRK02287 109 SVEALAAALYILGFKEEAEKILSKF 133 (171)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhhC
Confidence 3344444444445555554444444
No 420
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=33.15 E-value=1.2e+02 Score=18.77 Aligned_cols=25 Identities=12% Similarity=0.064 Sum_probs=19.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 188 VLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 188 ~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
.+.-++.+.|++++|.+..+.+.+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3455678999999999999998864
No 421
>PF14044 NETI: NETI protein
Probab=32.90 E-value=42 Score=21.11 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=14.2
Q ss_pred HHHHHHHHHcCcccCCcc
Q 048117 250 EKLLDGMKLKGYIPNTSV 267 (352)
Q Consensus 250 ~~l~~~m~~~g~~p~~~t 267 (352)
.+.+.+|+..||.|=...
T Consensus 11 ~~CL~RM~~eGY~PvrR~ 28 (57)
T PF14044_consen 11 SDCLARMKKEGYMPVRRI 28 (57)
T ss_pred HHHHHHHHHcCCCceeec
Confidence 358889999999986543
No 422
>PHA02875 ankyrin repeat protein; Provisional
Probab=32.85 E-value=3.9e+02 Score=24.51 Aligned_cols=182 Identities=14% Similarity=-0.009 Sum_probs=91.6
Q ss_pred HHHHHcCCHHHHHHHHHhcccCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHH--HHHHHHHHHhccCCHH
Q 048117 23 DMYVKCGCLEGARRVFIEMEERTVF--TWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGV--TFIGLLHACGHMGWVD 98 (352)
Q Consensus 23 ~~~~~~g~~~~A~~~f~~m~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~ 98 (352)
...++.|+++-+..+++.=..++.. ...+.+...+..|+.+ +.+-+.+.|..|+.. ...+.+...+..|+.+
T Consensus 7 ~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~ 82 (413)
T PHA02875 7 CDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVK 82 (413)
T ss_pred HHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHH
Confidence 3345678988888888754444321 1233445556677764 344445567666543 1223455566778888
Q ss_pred HHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHH
Q 048117 99 EGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPN---GVVWGALLGGCRVHKNIDLAEEASRQL 175 (352)
Q Consensus 99 ~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~ 175 (352)
.+..+++.-... .-..+..-. +.+...+..|+.+-+..+++. |..|+ ..-. +.+...+..|+.+....+++.-
T Consensus 83 ~v~~Ll~~~~~~-~~~~~~~g~-tpL~~A~~~~~~~iv~~Ll~~-gad~~~~~~~g~-tpLh~A~~~~~~~~v~~Ll~~g 158 (413)
T PHA02875 83 AVEELLDLGKFA-DDVFYKDGM-TPLHLATILKKLDIMKLLIAR-GADPDIPNTDKF-SPLHLAVMMGDIKGIELLIDHK 158 (413)
T ss_pred HHHHHHHcCCcc-cccccCCCC-CHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHhcC
Confidence 776666422100 001111112 233344567777666555554 43333 2223 3445556788887766665542
Q ss_pred HhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccC
Q 048117 176 DQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKT 217 (352)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 217 (352)
......+..-.+.| ...+..|+.+ +.+.+.+.|..++
T Consensus 159 ~~~~~~d~~g~TpL-~~A~~~g~~e----iv~~Ll~~ga~~n 195 (413)
T PHA02875 159 ACLDIEDCCGCTPL-IIAMAKGDIA----ICKMLLDSGANID 195 (413)
T ss_pred CCCCCCCCCCCCHH-HHHHHcCCHH----HHHHHHhCCCCCC
Confidence 22111111122233 2334566655 3444556666554
No 423
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=32.72 E-value=1.5e+02 Score=19.80 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=25.0
Q ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCC
Q 048117 43 ERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGW 96 (352)
Q Consensus 43 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 96 (352)
++|...=...+..+++.+. .++...+.++.. .+|..+=...+.++.+.|.
T Consensus 11 ~~~~~vr~~a~~~L~~~~~-~~~~~~L~~~l~---d~~~~vr~~a~~aL~~i~~ 60 (88)
T PF13646_consen 11 DPDPQVRAEAARALGELGD-PEAIPALIELLK---DEDPMVRRAAARALGRIGD 60 (88)
T ss_dssp SSSHHHHHHHHHHHHCCTH-HHHHHHHHHHHT---SSSHHHHHHHHHHHHCCHH
T ss_pred CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHc---CCCHHHHHHHHHHHHHhCC
Confidence 3444444444555554442 345555555542 2555555556666666654
No 424
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=32.61 E-value=46 Score=29.30 Aligned_cols=46 Identities=15% Similarity=0.272 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHH
Q 048117 47 FTWSAMIQGLAIHGQAK-EALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGR 101 (352)
Q Consensus 47 ~~~~~li~~~~~~g~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 101 (352)
+.|+.+|++---+.+-+ -|.+.++.. .+|.-|+.+++..|+.+-..
T Consensus 295 ivWs~iMsaveWnKkeelva~qalrhl---------K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 295 IVWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred eeHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHHHHhcCChHHHHH
Confidence 46777777654442211 122333322 35667777777777766544
No 425
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=32.30 E-value=1.7e+02 Score=22.58 Aligned_cols=18 Identities=6% Similarity=0.069 Sum_probs=8.5
Q ss_pred HHHhcCCHHHHHHHHHhC
Q 048117 126 LLSRAGFLQEAYEFIRNM 143 (352)
Q Consensus 126 ~~~~~g~~~~A~~~~~~m 143 (352)
++.|.++++.++++.+.+
T Consensus 80 g~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 80 GHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 344455555555444443
No 426
>PHA03100 ankyrin repeat protein; Provisional
Probab=32.24 E-value=4.3e+02 Score=24.79 Aligned_cols=163 Identities=10% Similarity=0.004 Sum_probs=73.8
Q ss_pred hHhHHHHhCCCCCHhH--HHHHHHH-----HHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHH-HcCCHHHHHHHHH
Q 048117 2 VHEYSNQSGFRRNIRV--CNTLIDM-----YVKCGCLEGARRVFIEMEE---RTVFTWSAMIQGLA-IHGQAKEALTSFN 70 (352)
Q Consensus 2 i~~~~~~~g~~~~~~~--~~~li~~-----~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~-~~g~~~~A~~l~~ 70 (352)
+...+++.|..|+... ..+.+.. .+..|..+-+.-+++.=.. +|...++.+..+.. ..|+. ++++
T Consensus 50 ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~----~iv~ 125 (480)
T PHA03100 50 VVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSY----SIVE 125 (480)
T ss_pred HHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChH----HHHH
Confidence 3455666676665432 2234444 5566666666666554322 23233344443332 44444 3344
Q ss_pred HHHHcCCCccHHH--HHHHHHHHhccC--CHHHHHHHHHHhHHhcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHhCC
Q 048117 71 KMIEIGIKPNGVT--FIGLLHACGHMG--WVDEGRRFFYSMTTEYGIIPQIEH--YGCMVDLLSRAGFLQEAYEFIRNMP 144 (352)
Q Consensus 71 ~m~~~g~~p~~~t--~~~ll~a~~~~g--~~~~a~~~~~~m~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~ 144 (352)
.+.+.|..++... -.+.+...+..| +.+-... +. +.|..++... ..+.+...++.|+.+-+..+++. +
T Consensus 126 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~----Ll-~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~-g 199 (480)
T PHA03100 126 YLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKL----LI-DKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDN-G 199 (480)
T ss_pred HHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHH----HH-HCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHc-C
Confidence 4445565554332 123344444555 4443333 33 2355543221 12334445666666655555543 3
Q ss_pred CCCCcc--------hHHHHHHHHHhcCC--HHHHHHHHHH
Q 048117 145 IKPNGV--------VWGALLGGCRVHKN--IDLAEEASRQ 174 (352)
Q Consensus 145 ~~p~~~--------~~~~li~~~~~~g~--~~~a~~~~~~ 174 (352)
..|+.. .+.+.+...+..|+ .+....+++.
T Consensus 200 a~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~ 239 (480)
T PHA03100 200 ADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSY 239 (480)
T ss_pred CCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc
Confidence 222211 11344444455666 5555444443
No 427
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=31.97 E-value=18 Score=23.70 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=16.7
Q ss_pred ceEEEecCCccccccCccccCC
Q 048117 328 REIVVRDRNRFHCFQAGSCSCG 349 (352)
Q Consensus 328 ~~i~~~d~~~~~~~~~g~c~c~ 349 (352)
+.|-+.|.+..|+|+||+-+-+
T Consensus 8 ksi~LkDGstvyiFKDGKMamE 29 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAME 29 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEEE
T ss_pred eeEecCCCCEEEEEcCCceehh
Confidence 4566789999999999986543
No 428
>PHA03100 ankyrin repeat protein; Provisional
Probab=30.90 E-value=4.5e+02 Score=24.64 Aligned_cols=161 Identities=10% Similarity=-0.016 Sum_probs=79.4
Q ss_pred HhHHHHhCCCCCHhH--HHHHHHHHH--HcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048117 3 HEYSNQSGFRRNIRV--CNTLIDMYV--KCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEI 75 (352)
Q Consensus 3 ~~~~~~~g~~~~~~~--~~~li~~~~--~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 75 (352)
...+.+.|..++..- ..+.+...+ +.|+.+-...+++.-... |...+ +.+...+..|. .-.++.+.+.+.
T Consensus 89 v~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~--~~~~iv~~Ll~~ 165 (480)
T PHA03100 89 VKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGE-NLLHLYLESNK--IDLKILKLLIDK 165 (480)
T ss_pred HHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCC-cHHHHHHHcCC--ChHHHHHHHHHC
Confidence 445666776554322 133444444 778888877777654333 22233 34455555662 112345555566
Q ss_pred CCCccHHHH--HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhh--------HHHHHHHHHhcCC--HHHHHHHHHhC
Q 048117 76 GIKPNGVTF--IGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEH--------YGCMVDLLSRAGF--LQEAYEFIRNM 143 (352)
Q Consensus 76 g~~p~~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~--------~~~li~~~~~~g~--~~~A~~~~~~m 143 (352)
|..++...- .+.+...+..|+.+-+.-+++ .|..++... +.+.+...++.|. .+-+..+++.
T Consensus 166 g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~-----~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~- 239 (480)
T PHA03100 166 GVDINAKNRYGYTPLHIAVEKGNIDVIKFLLD-----NGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSY- 239 (480)
T ss_pred CCCcccccCCCCCHHHHHHHhCCHHHHHHHHH-----cCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc-
Confidence 776654432 234455566676655544433 355544221 1333444455666 5555545444
Q ss_pred CCC---CCcchHHHHHHHHHhcCCHHHHHHHHH
Q 048117 144 PIK---PNGVVWGALLGGCRVHKNIDLAEEASR 173 (352)
Q Consensus 144 ~~~---p~~~~~~~li~~~~~~g~~~~a~~~~~ 173 (352)
|.. +|..-++.|.. .+..|+.+-+..+++
T Consensus 240 g~din~~d~~g~TpL~~-A~~~~~~~iv~~Ll~ 271 (480)
T PHA03100 240 GVPINIKDVYGFTPLHY-AVYNNNPEFVKYLLD 271 (480)
T ss_pred CCCCCCCCCCCCCHHHH-HHHcCCHHHHHHHHH
Confidence 322 23333444433 345666665544443
No 429
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=30.90 E-value=1.7e+02 Score=25.07 Aligned_cols=83 Identities=17% Similarity=0.053 Sum_probs=44.0
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChhh-HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCcchHHHHH-HHHHhcCCHHH
Q 048117 91 CGHMGWVDEGRRFFYSMTTEYGIIPQIEH-YGCMVDLLSRAGFLQEAYEF-IRNMPIKPNGVVWGALL-GGCRVHKNIDL 167 (352)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~li-~~~~~~g~~~~ 167 (352)
|-...+++.|..-+.+.. .+.|+..+ |+.=+-.|.+..+++.+..- .+.+.+.||.+-=..++ .+..+...+++
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 445556666666554433 45666533 34444455566666665432 22234555555444443 33455556677
Q ss_pred HHHHHHHHH
Q 048117 168 AEEASRQLD 176 (352)
Q Consensus 168 a~~~~~~~~ 176 (352)
|...+.+..
T Consensus 97 aI~~Lqra~ 105 (284)
T KOG4642|consen 97 AIKVLQRAY 105 (284)
T ss_pred HHHHHHHHH
Confidence 777666653
No 430
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=30.25 E-value=3.1e+02 Score=22.54 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=13.9
Q ss_pred HHccCHHHHHHHHHHHHh
Q 048117 194 AEAERWEDVARVRKLMRN 211 (352)
Q Consensus 194 ~~~g~~~~a~~~~~~m~~ 211 (352)
.+.|+++.|++.++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 467888888888887765
No 431
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=30.23 E-value=3.2e+02 Score=22.72 Aligned_cols=31 Identities=3% Similarity=0.031 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Q 048117 185 YHVVLSNIYAEAERWEDVARVRKLMRNLGVK 215 (352)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 215 (352)
....+...+.+.|+.++|.+.|.++...+-.
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 3345667778999999999999998865443
No 432
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=29.99 E-value=4.6e+02 Score=27.42 Aligned_cols=120 Identities=12% Similarity=0.019 Sum_probs=65.7
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 048117 31 LEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTE 110 (352)
Q Consensus 31 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 110 (352)
-.+|.++-.+|.. .-+++|.++++.|.. +.-++.+... ..-|.. -.....+...+.|.++.+-
T Consensus 1163 r~da~klk~~me~----qk~tli~AL~kKg~a---~ak~e~l~g~-~e~dae---------ee~s~ld~~~e~y~el~kw 1225 (1304)
T KOG1114|consen 1163 RPDAVKLKKKMEK----QKDTLIDALVKKGEA---FAKYEALKGH-KEQDAE---------EELSKLDSYNENYQELLKW 1225 (1304)
T ss_pred cchHHHHHHHHHH----HHHHHHHHHHHhhhH---Hhhhhhhccc-ccccch---------hhhhhhhhHHHHHHHHHHH
Confidence 3458888888854 346788888877742 3223322211 111221 1224455566666666632
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCcchHHHHHHHHHhcCCHHHH
Q 048117 111 YGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM----PIKPNGVVWGALLGGCRVHKNIDLA 168 (352)
Q Consensus 111 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~li~~~~~~g~~~~a 168 (352)
--.-|..++..-...+...|++..|++++.++ +..++-..|-.++..+...|.-..+
T Consensus 1226 -~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~H~~ 1286 (1304)
T KOG1114|consen 1226 -LDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWNHLA 1286 (1304)
T ss_pred -hhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCchHhH
Confidence 22234444554445555666666666666555 4455666676677777766655443
No 433
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=29.99 E-value=1.7e+02 Score=22.11 Aligned_cols=60 Identities=17% Similarity=0.053 Sum_probs=43.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHH
Q 048117 149 GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLM 209 (352)
Q Consensus 149 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 209 (352)
..+..++..++.-.|..+.|.++++...= ++.-.....-+++.|.++.+-++..++-++.
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkW-G~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKW-GHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34566888889999999999998876542 2211123336889999999998888876654
No 434
>PHA02791 ankyrin-like protein; Provisional
Probab=29.61 E-value=3.9e+02 Score=23.41 Aligned_cols=183 Identities=6% Similarity=-0.062 Sum_probs=93.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHhccC
Q 048117 20 TLIDMYVKCGCLEGARRVFIEMEERTV-FTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVT---FIGLLHACGHMG 95 (352)
Q Consensus 20 ~li~~~~~~g~~~~A~~~f~~m~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~a~~~~g 95 (352)
+.+...++.|+.+-+..+++.=...+. ..++. +...+..|..+-+..+ ...|..++... .+.+. ..+..|
T Consensus 32 TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d~~Tp-Lh~Aa~~g~~eiV~lL----L~~Gadvn~~d~~G~TpLh-~Aa~~g 105 (284)
T PHA02791 32 SALYYAIADNNVRLVCTLLNAGALKNLLENEFP-LHQAATLEDTKIVKIL----LFSGMDDSQFDDKGNTALY-YAVDSG 105 (284)
T ss_pred cHHHHHHHcCCHHHHHHHHHCcCCCcCCCCCCH-HHHHHHCCCHHHHHHH----HHCCCCCCCCCCCCCCHHH-HHHHcC
Confidence 334444667888888777764332221 12333 4444567775444333 34565554332 33343 334567
Q ss_pred CHHHHHHHHHHhHHhcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 048117 96 WVDEGRRFFYSMTTEYGIIPQI---EHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEAS 172 (352)
Q Consensus 96 ~~~~a~~~~~~m~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 172 (352)
..+-+..+++ .|...+. .-+++.+..-+..|+.+-+..++...+-..|.....+-+...++.|+.+-+..++
T Consensus 106 ~~eivk~Ll~-----~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lLL 180 (284)
T PHA02791 106 NMQTVKLFVK-----KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLL 180 (284)
T ss_pred CHHHHHHHHH-----CCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHHH
Confidence 7665554443 2544332 2233444445677888888777776432223222245666667888888777666
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcCCccC
Q 048117 173 RQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLGVKKT 217 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 217 (352)
+.-......+..-.+..+..-+..|+.+-+.-+ .+.|..+.
T Consensus 181 ~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lL----l~~Ga~in 221 (284)
T PHA02791 181 DYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQAL----FKYDINIY 221 (284)
T ss_pred HCCCCCCcccCCCCChHHHHHHHcCCHHHHHHH----HHCCCCCc
Confidence 542211111111111213444677777655444 45576653
No 435
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=28.66 E-value=3.3e+02 Score=22.27 Aligned_cols=65 Identities=11% Similarity=0.095 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHcCCCccH--HH-----HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhc
Q 048117 62 AKEALTSFNKMIEIGIKPNG--VT-----FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRA 130 (352)
Q Consensus 62 ~~~A~~l~~~m~~~g~~p~~--~t-----~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~ 130 (352)
.+.|+.+|+...+.--.|+. .. -...+-.|.+.|.+++|.++++.... .|+......-+....+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~----d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS----DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc----CCCchhHHHHHHHHHHc
Confidence 67899999998765434421 11 23456689999999999999998873 45554444444444443
No 436
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=28.66 E-value=71 Score=21.66 Aligned_cols=82 Identities=16% Similarity=0.083 Sum_probs=42.5
Q ss_pred HHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHhccCCHHHH
Q 048117 24 MYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGV---TFIGLLHACGHMGWVDEG 100 (352)
Q Consensus 24 ~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a 100 (352)
..++.|+++-...+++.-.+.+. -+..+...+..|+. ++++.+.+.|..|+.. -.+.+.. .+..|..+-+
T Consensus 3 ~A~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~~~ 75 (89)
T PF12796_consen 3 IAAQNGNLEILKFLLEKGADINL--GNTALHYAAENGNL----EIVKLLLENGADINSQDKNGNTALHY-AAENGNLEIV 75 (89)
T ss_dssp HHHHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBHHHH-HHHTTHHHHH
T ss_pred HHHHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCCH----HHHHHHHHhcccccccCCCCCCHHHH-HHHcCCHHHH
Confidence 34677888877777774333333 22344455566764 4455555567666654 2333333 3455665533
Q ss_pred HHHHHHhHHhcCCCCCh
Q 048117 101 RRFFYSMTTEYGIIPQI 117 (352)
Q Consensus 101 ~~~~~~m~~~~g~~~~~ 117 (352)
+.+. +.|..++.
T Consensus 76 ----~~Ll-~~g~~~~~ 87 (89)
T PF12796_consen 76 ----KLLL-EHGADVNI 87 (89)
T ss_dssp ----HHHH-HTTT-TTS
T ss_pred ----HHHH-HcCCCCCC
Confidence 3344 23666653
No 437
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=28.65 E-value=3.8e+02 Score=23.06 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=12.2
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHH
Q 048117 14 NIRVCNTLIDMYVKCGCLEGARRVFI 39 (352)
Q Consensus 14 ~~~~~~~li~~~~~~g~~~~A~~~f~ 39 (352)
|+.....+-..|.+.|++.+|+.-|-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 44445555555555555555554443
No 438
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=28.34 E-value=4.5e+02 Score=23.76 Aligned_cols=125 Identities=14% Similarity=0.108 Sum_probs=71.0
Q ss_pred CCCCH---hHHHHHHHHHHHc---CCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccH
Q 048117 11 FRRNI---RVCNTLIDMYVKC---GCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNG 81 (352)
Q Consensus 11 ~~~~~---~~~~~li~~~~~~---g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 81 (352)
++|+. .++|+++..-.+. ..++.|...|..=..- -.+..-.+-+.+++.++-+.+..+-+.... -|+.
T Consensus 122 FkP~~~klA~fhA~v~~~L~~p~S~yye~a~~Ylsg~~~~~~WQ~lGLQGIAD~~aRl~~~~~~~~l~~al~~---lP~~ 198 (340)
T PF12069_consen 122 FKPSQEKLAMFHAQVRAQLGQPASQYYEHAQAYLSGQLGWDNWQTLGLQGIADICARLDQEDNAQLLRKALPH---LPPE 198 (340)
T ss_pred cCCChHHHHHHHHHHHHHcCCCcchhHHHHHHHHcCCcchhHHHHhhhhHHHHHHHHhcccchHHHHHHHHhh---CChH
Confidence 45553 5678888776543 3467777766532211 123334456777888877766665555543 3555
Q ss_pred HHHHHHHHHHhccCCHHH-HHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 048117 82 VTFIGLLHACGHMGWVDE-GRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNM 143 (352)
Q Consensus 82 ~t~~~ll~a~~~~g~~~~-a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 143 (352)
+-+ +++.++-+..-.+. +..+.+.... .||.....+++.+++...........++.+
T Consensus 199 vl~-aL~~~LEh~~l~~~l~~~l~~~~~~----~~d~~~~~a~lRAls~~~~~~~~~~~i~~~ 256 (340)
T PF12069_consen 199 VLY-ALCGCLEHQPLPDKLAEALLERLEQ----APDLELLSALLRALSSAPASDLVAILIDAL 256 (340)
T ss_pred HHH-HHHHHhcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHcCCCchhHHHHHHHHH
Confidence 544 44544444443332 3344444432 288888888888888877666555534444
No 439
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=28.27 E-value=2.1e+02 Score=19.94 Aligned_cols=17 Identities=12% Similarity=0.157 Sum_probs=8.2
Q ss_pred hccCCHHHHHHHHHHhH
Q 048117 92 GHMGWVDEGRRFFYSMT 108 (352)
Q Consensus 92 ~~~g~~~~a~~~~~~m~ 108 (352)
...|+.++|.+.+++.+
T Consensus 52 ~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 52 RRFGHYEEALQALEEAI 68 (94)
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 34455555555554444
No 440
>PRK07914 hypothetical protein; Reviewed
Probab=27.92 E-value=4.3e+02 Score=23.44 Aligned_cols=78 Identities=9% Similarity=-0.017 Sum_probs=47.3
Q ss_pred hHhHHHHhCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhccc-C--------------CH--HHHHHHHHHHHHcCCHHH
Q 048117 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE-R--------------TV--FTWSAMIQGLAIHGQAKE 64 (352)
Q Consensus 2 i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~--------------~~--~~~~~li~~~~~~g~~~~ 64 (352)
|-..+.+.|++.+....+.|+..+. +++.....-++++.. + +. .+--.++++.+ .|+..+
T Consensus 137 i~~~a~~~g~~i~~~A~~~L~~~~g--~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~vf~L~dAi~-~g~~~~ 213 (320)
T PRK07914 137 VRKEFRSLRVKVDDDTVTALLDAVG--SDLRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADKAV-AGDVAG 213 (320)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHC--ccHHHHHHHHHHHhcCCCCCcCHHHHHHHcCCCeechHHHHHHHHH-CCCHHH
Confidence 3455667788888888888877765 355554444444321 1 11 12223444443 688888
Q ss_pred HHHHHHHHHHcCCCccHH
Q 048117 65 ALTSFNKMIEIGIKPNGV 82 (352)
Q Consensus 65 A~~l~~~m~~~g~~p~~~ 82 (352)
|+.+++++...|..|-..
T Consensus 214 A~~~l~~L~~~ge~p~~i 231 (320)
T PRK07914 214 AAEALRWAMMRGEPHVVL 231 (320)
T ss_pred HHHHHHHHHHCCCchHHH
Confidence 888888888888777443
No 441
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=27.57 E-value=2.7e+02 Score=20.96 Aligned_cols=40 Identities=13% Similarity=0.104 Sum_probs=29.0
Q ss_pred HHHHHHHHHh--cCCCCcchHHHHHHHHHHccCHHHHHHHHH
Q 048117 168 AEEASRQLDQ--LDPLNNGYHVVLSNIYAEAERWEDVARVRK 207 (352)
Q Consensus 168 a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 207 (352)
...+|..|.+ .+......|......+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5667777765 344445566777777888999999998886
No 442
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=27.54 E-value=2.1e+02 Score=23.90 Aligned_cols=79 Identities=15% Similarity=0.148 Sum_probs=45.4
Q ss_pred CHHHHHHHHHhCCCC----------CCcchHHHHHHHHHhcCC---------HHHHHHHHHHHHhc--CCCCcchHHHHH
Q 048117 132 FLQEAYEFIRNMPIK----------PNGVVWGALLGGCRVHKN---------IDLAEEASRQLDQL--DPLNNGYHVVLS 190 (352)
Q Consensus 132 ~~~~A~~~~~~m~~~----------p~~~~~~~li~~~~~~g~---------~~~a~~~~~~~~~~--~~~~~~~~~~l~ 190 (352)
..+.|..+++.|+.. ....-|..+..+|.++|- .+.-..+++..+.. ...-+..|..+|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 467889999998421 134457788888888873 33444444444431 112234555666
Q ss_pred HHHHHccCHHHHHHHHHHHH
Q 048117 191 NIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 191 ~~~~~~g~~~~a~~~~~~m~ 210 (352)
+--...-+.++..+++..++
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 54444455666666665543
No 443
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=27.52 E-value=1.8e+02 Score=18.96 Aligned_cols=30 Identities=7% Similarity=0.109 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048117 47 FTWSAMIQGLAIHGQAKEALTSFNKMIEIG 76 (352)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 76 (352)
..++.++...++-.-.++++..+.+..+.|
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334444444444444444444444444443
No 444
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.35 E-value=1.2e+02 Score=20.85 Aligned_cols=28 Identities=7% Similarity=0.159 Sum_probs=25.4
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCc
Q 048117 188 VLSNIYAEAERWEDVARVRKLMRNLGVK 215 (352)
Q Consensus 188 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 215 (352)
++++.+.+|.-.++|.++.+-|.++|-.
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGEi 63 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGEI 63 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCCC
Confidence 6789899999999999999999998864
No 445
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=27.24 E-value=4.2e+02 Score=24.82 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=27.1
Q ss_pred CCCCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048117 144 PIKPN--GVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLN 182 (352)
Q Consensus 144 ~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 182 (352)
..+|. ..+..+.++.+.+++++..|-.+.+++.+..|..
T Consensus 293 ~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 293 KLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp ---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred CCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 44542 3356677788899999999999999999887754
No 446
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=26.69 E-value=4.2e+02 Score=23.46 Aligned_cols=139 Identities=13% Similarity=0.091 Sum_probs=65.3
Q ss_pred HHHHHHHHcC--------CCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 048117 67 TSFNKMIEIG--------IKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYE 138 (352)
Q Consensus 67 ~l~~~m~~~g--------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 138 (352)
.+|+-+.+.| ++.|.--++++++- +..++++--+-.++.....|-.-....+-.+..-|++.++.+.+.+
T Consensus 59 plYkyL~E~~n~kt~a~~ikfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~ 136 (412)
T COG5187 59 PLYKYLAEKGNPKTSASVIKFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFE 136 (412)
T ss_pred HHHHHHHhccCCcccchheehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4555555555 44455555655542 1122222222222333222333335567778888888888888888
Q ss_pred HHHhC-------CCCCCcchHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCCc--chHHHHHHHH-HHccCHHHHHHH
Q 048117 139 FIRNM-------PIKPNGVVWGALLGG---CRVHKNIDLAEEASRQLDQLDPLNN--GYHVVLSNIY-AEAERWEDVARV 205 (352)
Q Consensus 139 ~~~~m-------~~~p~~~~~~~li~~---~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~-~~~g~~~~a~~~ 205 (352)
+.++. +.+.|+. -+.|+. |....-+++-.+..+.+.+.+.+-. .-|-..-.+| ....++.+|-.+
T Consensus 137 ~~~~~~~~a~stg~KiDv~--l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~L 214 (412)
T COG5187 137 WMRRLMRDAMSTGLKIDVF--LCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAIL 214 (412)
T ss_pred HHHHHHHHHHhcccchhhH--HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHH
Confidence 77665 4443322 222222 2223334555555555555443211 1111111111 234456666666
Q ss_pred HHHH
Q 048117 206 RKLM 209 (352)
Q Consensus 206 ~~~m 209 (352)
+...
T Consensus 215 l~d~ 218 (412)
T COG5187 215 LSDI 218 (412)
T ss_pred HHHH
Confidence 5544
No 447
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.62 E-value=3.7e+02 Score=22.21 Aligned_cols=122 Identities=11% Similarity=0.094 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHH--HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHH---
Q 048117 48 TWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFI--GLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGC--- 122 (352)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~--- 122 (352)
.|..++...- .+.+ +.......+....-+...-++. .+...+...+++++|...++.... . |....+.+
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~-t~De~lk~l~~ 129 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA---Q-TKDENLKALAA 129 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---c-chhHHHHHHHH
Confidence 3444444443 3333 4444455554432222222222 234556667777777776665442 1 11222222
Q ss_pred --HHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHH-----HHHHhcCCHHHHHHHHHHHHhcC
Q 048117 123 --MVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALL-----GGCRVHKNIDLAEEASRQLDQLD 179 (352)
Q Consensus 123 --li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li-----~~~~~~g~~~~a~~~~~~~~~~~ 179 (352)
|.......|.+|+|+..++... ...|.+++ ..+...|+-++|...|....+..
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~----~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIK----EESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccc----cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3344556677777777776542 22333322 34666777777777777766544
No 448
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=26.49 E-value=6e+02 Score=24.63 Aligned_cols=92 Identities=10% Similarity=0.003 Sum_probs=52.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CcchH---HHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCcchHHHHHHH
Q 048117 119 HYGCMVDLLSRAGFLQEAYEFIRNMPIKP-NGVVW---GALLGGCRVHKNIDLAEEASRQLDQ--LDPLNNGYHVVLSNI 192 (352)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~ 192 (352)
....|+.-|.+.+++++|..++..|.... ....| +.+.+.+.+..--++.+..++.+.. ..|..+... ....-
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~-~~~~e 488 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSD-ATVLE 488 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccH-HHHHH
Confidence 34567888999999999999999995442 22233 3444555555545556666666655 334433222 22233
Q ss_pred HHHccCHHHHHHHHHHHHhc
Q 048117 193 YAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 193 ~~~~g~~~~a~~~~~~m~~~ 212 (352)
|.. -=.+-|+++|..|.+.
T Consensus 489 y~d-~V~~~aRRfFhhLLR~ 507 (545)
T PF11768_consen 489 YRD-PVSDLARRFFHHLLRY 507 (545)
T ss_pred HHH-HHHHHHHHHHHHHHHh
Confidence 332 2334566666666543
No 449
>PRK09687 putative lyase; Provisional
Probab=26.34 E-value=4.4e+02 Score=22.99 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=11.4
Q ss_pred HHHhcccCCHHHHHHHHHHHHHcC
Q 048117 37 VFIEMEERTVFTWSAMIQGLAIHG 60 (352)
Q Consensus 37 ~f~~m~~~~~~~~~~li~~~~~~g 60 (352)
+++.+..+|.......+.++.+.|
T Consensus 28 L~~~L~d~d~~vR~~A~~aL~~~~ 51 (280)
T PRK09687 28 LFRLLDDHNSLKRISSIRVLQLRG 51 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcC
Confidence 333344445544444555555444
No 450
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=25.99 E-value=2.3e+02 Score=27.69 Aligned_cols=95 Identities=19% Similarity=0.100 Sum_probs=53.2
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCcchHHHHHHHHHhcCCHHHH
Q 048117 93 HMGWVDEGRRFFYSMTTEYGIIPQ--IEHYGCMVDLLSRAGFLQEAYEFIRNM-PIK-PNGVVWGALLGGCRVHKNIDLA 168 (352)
Q Consensus 93 ~~g~~~~a~~~~~~m~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a 168 (352)
..|+...|...+.... ...|- -+....|.+.+.+.|...+|-.++.+. .+. ..+.++-.+-+++....+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 3456666655544333 22232 223344555555666666666655443 222 2344555666777777777777
Q ss_pred HHHHHHHHhcCCCCcchHHHHH
Q 048117 169 EEASRQLDQLDPLNNGYHVVLS 190 (352)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~ 190 (352)
.+.|+...+..|..+..-+.|.
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLK 717 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHH
Confidence 7777777777776665555443
No 451
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.96 E-value=4.2e+02 Score=26.86 Aligned_cols=142 Identities=13% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHhcccC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHH-------HHHHHHHHhccCCH
Q 048117 32 EGARRVFIEMEER-------TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVT-------FIGLLHACGHMGWV 97 (352)
Q Consensus 32 ~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------~~~ll~a~~~~g~~ 97 (352)
++-...+++|+.+ ...+-..|+-.|-...+++..+++.+.+++.--..+.+. |.-.++-=.+-|+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccH
Q ss_pred HHHHHHHHHhHHhcC-CCCChhhHHHHHH-------HHHhcCCHHHHHHHHHhC-CCCCCcch---HHHHHHH-------
Q 048117 98 DEGRRFFYSMTTEYG-IIPQIEHYGCMVD-------LLSRAGFLQEAYEFIRNM-PIKPNGVV---WGALLGG------- 158 (352)
Q Consensus 98 ~~a~~~~~~m~~~~g-~~~~~~~~~~li~-------~~~~~g~~~~A~~~~~~m-~~~p~~~~---~~~li~~------- 158 (352)
++|+...-.++++.| +.||.....--|. .|...+..+.|.++|++. .++|+..+ +.+|+.+
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fen 339 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFEN 339 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccc
Q ss_pred --------------HHhcCCHHHHHHHHH
Q 048117 159 --------------CRVHKNIDLAEEASR 173 (352)
Q Consensus 159 --------------~~~~g~~~~a~~~~~ 173 (352)
+.+.|.++....+|+
T Consensus 340 s~Elq~IgmkLn~LlgrKG~leklq~YWd 368 (1226)
T KOG4279|consen 340 SLELQQIGMKLNSLLGRKGALEKLQEYWD 368 (1226)
T ss_pred hHHHHHHHHHHHHHhhccchHHHHHHHHh
No 452
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=25.74 E-value=8e+02 Score=25.84 Aligned_cols=20 Identities=10% Similarity=-0.061 Sum_probs=12.5
Q ss_pred HHHHHHHcCCHHHHHHHHHh
Q 048117 21 LIDMYVKCGCLEGARRVFIE 40 (352)
Q Consensus 21 li~~~~~~g~~~~A~~~f~~ 40 (352)
.|.-+...+++.+|..+.+.
T Consensus 700 ~ir~~Ld~~~Y~~Af~~~Rk 719 (928)
T PF04762_consen 700 GIRKLLDAKDYKEAFELCRK 719 (928)
T ss_pred HHHHHHhhccHHHHHHHHHH
Confidence 34455667777777666554
No 453
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=25.57 E-value=1.7e+02 Score=20.24 Aligned_cols=44 Identities=18% Similarity=0.157 Sum_probs=21.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHH
Q 048117 52 MIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEG 100 (352)
Q Consensus 52 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 100 (352)
+-......|..+.|..+++.+. . .|+. |..+++|+...|.-.-|
T Consensus 38 I~a~~~~~G~~~aa~~Ll~~L~-r--~~~W--f~~Fl~AL~~~~~~~LA 81 (84)
T cd08789 38 IQAAENNSGNIKAAWTLLDTLV-R--RDNW--LEPFLDALRECGLGHLA 81 (84)
T ss_pred HHHHHhcCChHHHHHHHHHHHh-c--cCCh--HHHHHHHHHHcCCHHHH
Confidence 3333334566666666666665 2 3443 33455555555544433
No 454
>PRK02287 hypothetical protein; Provisional
Probab=25.35 E-value=2.7e+02 Score=22.34 Aligned_cols=61 Identities=15% Similarity=0.042 Sum_probs=44.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHh
Q 048117 150 VVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 150 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
.+..++..++.-.|..+.|.++++... .+..-.....-+++.|+++.+-++..++-++..+
T Consensus 108 s~vEAlAaaLyI~G~~~~A~~ll~~F~-WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~~ 168 (171)
T PRK02287 108 SSVEALAAALYILGFKEEAEKILSKFK-WGHTFLELNKEPLEAYARAKDSEEIVEIQKEYLG 168 (171)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhhCC-ChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 356788889999999999999987653 2221112333688999999999999988777654
No 455
>PHA02878 ankyrin repeat protein; Provisional
Probab=25.18 E-value=5.8e+02 Score=24.04 Aligned_cols=68 Identities=9% Similarity=-0.043 Sum_probs=30.5
Q ss_pred HHHHhHHhcCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHhCCCCCC---cchHHHHHHHHHhcCCHHHHHHHHH
Q 048117 103 FFYSMTTEYGIIPQIEH---YGCMVDLLSRAGFLQEAYEFIRNMPIKPN---GVVWGALLGGCRVHKNIDLAEEASR 173 (352)
Q Consensus 103 ~~~~m~~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~ 173 (352)
+.+.+. +.|..++... ..+.+...++.|+.+-+..+++. +..++ ..-++. +...++.|+.+-...+++
T Consensus 149 iv~~Ll-~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~-gad~n~~d~~g~tp-Lh~A~~~~~~~iv~~Ll~ 222 (477)
T PHA02878 149 ITKLLL-SYGADINMKDRHKGNTALHYATENKDQRLTELLLSY-GANVNIPDKTNNSP-LHHAVKHYNKPIVHILLE 222 (477)
T ss_pred HHHHHH-HcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHC-CCCCCCcCCCCCCH-HHHHHHhCCHHHHHHHHH
Confidence 333344 3365554321 22334444566776665555543 22222 222333 334445666655544443
No 456
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.89 E-value=8e+02 Score=25.55 Aligned_cols=129 Identities=16% Similarity=0.188 Sum_probs=83.1
Q ss_pred HHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHH
Q 048117 25 YVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFF 104 (352)
Q Consensus 25 ~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 104 (352)
...||+++.|.+.-.... |..+|..|.......|+.+-|...|++.+. |.-|--.|.-.|+.++-.++-
T Consensus 653 aLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~ 721 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMM 721 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHH
Confidence 345566666655443332 556899999999999999988888887653 333444566778888776655
Q ss_pred HHhHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048117 105 YSMTTEYGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177 (352)
Q Consensus 105 ~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 177 (352)
+-...+ -|. -....++ .-.|++++-.++++.-+..| ..|- .-..+|.-+.|.++.++..+
T Consensus 722 ~iae~r----~D~--~~~~qna-lYl~dv~ervkIl~n~g~~~--layl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 722 KIAEIR----NDA--TGQFQNA-LYLGDVKERVKILENGGQLP--LAYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHhh----hhh--HHHHHHH-HHhccHHHHHHHHHhcCccc--HHHH----HHhhcCcHHHHHHHHHhhcc
Confidence 443322 222 1122222 23688999999999887554 2332 22458888999999888765
No 457
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=24.87 E-value=1.8e+02 Score=27.40 Aligned_cols=49 Identities=16% Similarity=0.052 Sum_probs=21.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHH
Q 048117 162 HKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMR 210 (352)
Q Consensus 162 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 210 (352)
.+.++.|..++.++..+.|+...++..=..++.+.+++..|..=+....
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kai 65 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAI 65 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhh
Confidence 3444445555555554444444333322234444444444444433333
No 458
>PRK09462 fur ferric uptake regulator; Provisional
Probab=24.60 E-value=3.2e+02 Score=20.96 Aligned_cols=61 Identities=10% Similarity=0.117 Sum_probs=35.9
Q ss_pred HHHcCCCccHHHHHHHHHHHhcc-CCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 048117 72 MIEIGIKPNGVTFIGLLHACGHM-GWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAGFLQ 134 (352)
Q Consensus 72 m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~ 134 (352)
+++.|++++..-. .++..+... +..-.|.++++.+.++ +...+..|..--++.+...|-+.
T Consensus 8 l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~-~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDM-GEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHCCCEE
Confidence 4566766655543 344444443 3456777888877754 55556555555556777777654
No 459
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=24.54 E-value=8.1e+02 Score=28.61 Aligned_cols=117 Identities=10% Similarity=-0.032 Sum_probs=67.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHH----HHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHH
Q 048117 51 AMIQGLAIHGQAKEALTSFNK----MIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDL 126 (352)
Q Consensus 51 ~li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~ 126 (352)
++-.+-.+.+.+.+|+..+++ +... .....-|-.+...|+..+++|...-+...-. -.|+ . ...|-.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~----a~~s--l-~~qil~ 1458 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRF----ADPS--L-YQQILE 1458 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhh----cCcc--H-HHHHHH
Confidence 334455567778888888877 2221 1122223344447888888877666554211 1222 2 223344
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048117 127 LSRAGFLQEAYEFIRNM-PIKPN-GVVWGALLGGCRVHKNIDLAEEASRQLD 176 (352)
Q Consensus 127 ~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 176 (352)
....|++..|...|+.+ +..|+ ..+++-++......|.++......+-..
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~ 1510 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLI 1510 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchh
Confidence 56778888888888888 44454 5567777776666666665555444433
No 460
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=24.38 E-value=3.8e+02 Score=25.30 Aligned_cols=72 Identities=14% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCC
Q 048117 21 LIDMYVKCGCLEGARRVFIEMEER---TVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGW 96 (352)
Q Consensus 21 li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 96 (352)
|+.-|.-.|++.+|.+..+++.-| ..+.+-+++-+.-+.|+...-++++++.-..|+ +|-+.+-.+|.+..+
T Consensus 515 LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~RV~d 589 (645)
T KOG0403|consen 515 LLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFERVYD 589 (645)
T ss_pred HHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhhhhc
No 461
>PRK10292 hypothetical protein; Provisional
Probab=24.36 E-value=2.1e+02 Score=18.59 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=15.3
Q ss_pred HHHHcCCCccHHHHHHHHHHHhccCCH
Q 048117 71 KMIEIGIKPNGVTFIGLLHACGHMGWV 97 (352)
Q Consensus 71 ~m~~~g~~p~~~t~~~ll~a~~~~g~~ 97 (352)
+|...|.+|.......+|..-...++.
T Consensus 24 ~m~~lG~e~k~i~Ia~vlrTa~a~~r~ 50 (69)
T PRK10292 24 EMRDLGQEPKHIVIAGVLRTALANKRI 50 (69)
T ss_pred HHHHcCCCcchhhHHHHHHHHHHhccc
Confidence 345567777777666666444444433
No 462
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.02 E-value=6.4e+02 Score=24.13 Aligned_cols=37 Identities=5% Similarity=-0.158 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh
Q 048117 80 NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQI 117 (352)
Q Consensus 80 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~ 117 (352)
+...+..++.+....+....+..++.++.. .|..|..
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~-~G~d~~~ 283 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQ-EGQDIYK 283 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-cCCCHHH
Confidence 455556666666655555677777777774 4766653
No 463
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=23.99 E-value=5.7e+02 Score=23.49 Aligned_cols=53 Identities=8% Similarity=-0.007 Sum_probs=32.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCccHH--HHHHHHHHHh--ccCCHHHHHHHHHHhH
Q 048117 55 GLAIHGQAKEALTSFNKMIEIGIKPNGV--TFIGLLHACG--HMGWVDEGRRFFYSMT 108 (352)
Q Consensus 55 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~ 108 (352)
.+...+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++...
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 334677888888888888766 555554 3333444443 2455667777776655
No 464
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=23.98 E-value=2.5e+02 Score=19.41 Aligned_cols=32 Identities=13% Similarity=0.133 Sum_probs=18.8
Q ss_pred CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 048117 11 FRRNIRVCNTLIDMYVKCGCLEGARRVFIEME 42 (352)
Q Consensus 11 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 42 (352)
+.|+...||.+++.....+.+.-|..++....
T Consensus 12 F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~V 43 (83)
T PF10963_consen 12 FNPTPTAYNKYINEMAMDNKVAPAHNYLMRIV 43 (83)
T ss_pred eccCHHHHHHHHHHhccCCCchHHHHHHHHHc
Confidence 45666666666666666666665555544443
No 465
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=23.55 E-value=3.9e+02 Score=21.47 Aligned_cols=76 Identities=12% Similarity=0.072 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHhC
Q 048117 66 LTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG-FLQEAYEFIRNM 143 (352)
Q Consensus 66 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m 143 (352)
..+..++.+.|+ +..+...++..+......+.|..++..-....+..|+..-...+...+.+.| .++.+..++..+
T Consensus 88 ~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~~~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~~ 164 (174)
T COG2137 88 ARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVLRKKFKRENKPPDKKEKAKIQRFLLRRGFSYEVIKEALNEA 164 (174)
T ss_pred HHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHHHHHhCccccCcchhHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 455566666663 3334444555555555555555555443333234455444555555555555 344455555544
No 466
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=23.49 E-value=1.4e+02 Score=18.21 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=16.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcc
Q 048117 54 QGLAIHGQAKEALTSFNKMIEIGIKPN 80 (352)
Q Consensus 54 ~~~~~~g~~~~A~~l~~~m~~~g~~p~ 80 (352)
+-+...|--.+++.+.-++.+.|+.|.
T Consensus 12 S~lLntgLd~etL~ici~L~e~GVnPe 38 (48)
T PF12554_consen 12 SDLLNTGLDRETLSICIELCENGVNPE 38 (48)
T ss_pred HHHHcCCCCHHHHHHHHHHHHCCCCHH
Confidence 334455666667777777777766554
No 467
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.48 E-value=4.9e+02 Score=22.51 Aligned_cols=88 Identities=17% Similarity=0.046 Sum_probs=60.4
Q ss_pred HHHHhcCCHHHHHHHHHhC---------CCCCCcchHH-------HHH----HHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 048117 125 DLLSRAGFLQEAYEFIRNM---------PIKPNGVVWG-------ALL----GGCRVHKNIDLAEEASRQLDQLDPLNNG 184 (352)
Q Consensus 125 ~~~~~~g~~~~A~~~~~~m---------~~~p~~~~~~-------~li----~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 184 (352)
+-+.+.|++.+|..-+++. ..+|...-|- .|+ .++...|++-++.+-..++....|.+..
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvK 265 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK 265 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 4466788888877666553 3456555553 223 3345567888888888888889998887
Q ss_pred hHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 185 YHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
.|..=..+-+..=+..+|..=|....+.
T Consensus 266 A~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 266 AYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 7776666666666777787777776654
No 468
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=23.48 E-value=2.4e+02 Score=26.17 Aligned_cols=57 Identities=12% Similarity=0.153 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccc--C---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048117 17 VCNTLIDMYVKCGCLEGARRVFIEMEE--R---------TVFTWSAMIQGLAIHGQAKEALTSFNKMI 73 (352)
Q Consensus 17 ~~~~li~~~~~~g~~~~A~~~f~~m~~--~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 73 (352)
+.-.|+...+-.||+..|.++++.+.- + .+.+|-.+.-+|...+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777888888888776641 1 33455566667777777777777777653
No 469
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=23.40 E-value=17 Score=24.82 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=13.1
Q ss_pred HHHhCCCCCHhHHHHHHHHHHHcCC
Q 048117 6 SNQSGFRRNIRVCNTLIDMYVKCGC 30 (352)
Q Consensus 6 ~~~~g~~~~~~~~~~li~~~~~~g~ 30 (352)
..+..+..+..+|.+.|++|+|.|.
T Consensus 15 ~~QYeLsk~~~vyRvFiNgYar~g~ 39 (88)
T PF11491_consen 15 VKQYELSKNEAVYRVFINGYARNGF 39 (88)
T ss_dssp HHHHTTTTTTTB------TTSS--E
T ss_pred HHHHHhhcccceeeeeecccccceE
Confidence 4566777888889999999998885
No 470
>PRK14135 recX recombination regulator RecX; Provisional
Probab=23.29 E-value=4.8e+02 Score=22.35 Aligned_cols=80 Identities=10% Similarity=0.144 Sum_probs=43.4
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHhC
Q 048117 65 ALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSRAG-FLQEAYEFIRNM 143 (352)
Q Consensus 65 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m 143 (352)
-..+-.++.+.|+.++.+. .++..+...+.++.+..+.........-.|......-+...+.+.| ..+.+.++++++
T Consensus 125 ~~~I~~kL~~kGi~~~~Ie--~~l~~l~~~~~~d~a~~~~~k~~~~~~~~~~~~~k~Ki~~~L~rkGf~~~~I~~~l~~~ 202 (263)
T PRK14135 125 PRVIKQKLLQKGIEDEIIE--EALSEYTEEDQIEVAQKLAEKLLKKYQKLPFKALKQKIIQSLLTKGFSYEVIKAALEEL 202 (263)
T ss_pred hHHHHHHHHHcCCCHHHHH--HHHHhCChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHc
Confidence 3466777777887665543 3455544445556665555444332221222233455666666777 455566677766
Q ss_pred CCC
Q 048117 144 PIK 146 (352)
Q Consensus 144 ~~~ 146 (352)
...
T Consensus 203 ~~e 205 (263)
T PRK14135 203 DLE 205 (263)
T ss_pred ccC
Confidence 433
No 471
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=23.07 E-value=67 Score=23.55 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHcCcccCCccc
Q 048117 244 KIFQMWEKLLDGMKLKGYIPNTSVV 268 (352)
Q Consensus 244 ~~~~~~~~l~~~m~~~g~~p~~~t~ 268 (352)
..+..=+.+.++|...|++||..+.
T Consensus 49 ~L~~yH~lv~~EM~~RGY~~~~~W~ 73 (120)
T TIGR02328 49 KLFAYHLLVMEEMATRGYHVSKQWL 73 (120)
T ss_pred HHHHHHHHHHHHHHHcCCCCChhhc
Confidence 3334344588999999999999775
No 472
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=23.00 E-value=6.5e+02 Score=25.45 Aligned_cols=70 Identities=9% Similarity=0.047 Sum_probs=41.0
Q ss_pred HhCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhccc-----------------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048117 8 QSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEE-----------------RTVFTWSAMIQGLAIHGQAKEALTSFN 70 (352)
Q Consensus 8 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----------------~~~~~~~~li~~~~~~g~~~~A~~l~~ 70 (352)
+.|+..+......|+... .|++..|..++++... .+......|+.++. .++...++.+++
T Consensus 193 kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~-~~d~~~al~~l~ 269 (709)
T PRK08691 193 SEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII-NQDGAALLAKAQ 269 (709)
T ss_pred HcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 456666665555555443 4777777777765321 12223444555554 367777777777
Q ss_pred HHHHcCCCcc
Q 048117 71 KMIEIGIKPN 80 (352)
Q Consensus 71 ~m~~~g~~p~ 80 (352)
+|...|+.+.
T Consensus 270 ~L~~~G~d~~ 279 (709)
T PRK08691 270 EMAACAVGFD 279 (709)
T ss_pred HHHHhCCCHH
Confidence 7777776554
No 473
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=22.82 E-value=3e+02 Score=19.79 Aligned_cols=58 Identities=9% Similarity=0.089 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccCC--HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcC
Q 048117 19 NTLIDMYVKCGCLEGARRVFIEMEERT--VFTWSAMIQGLAIHG--QAKEALTSFNKMIEIG 76 (352)
Q Consensus 19 ~~li~~~~~~g~~~~A~~~f~~m~~~~--~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g 76 (352)
..++.-|...|++++|..-+.++..|+ ...-..+|....+.+ .-+.+..++..+.+.+
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 456778888899999999998887662 223334444444443 3444556666665554
No 474
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=22.34 E-value=5.5e+02 Score=22.68 Aligned_cols=158 Identities=11% Similarity=0.025 Sum_probs=85.3
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhcccC--------CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCccH
Q 048117 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEER--------TVFTWSAMIQGLAIHG---QAKEALTSFNKMIEIGIKPNG 81 (352)
Q Consensus 13 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--------~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~ 81 (352)
++..++.++... +.|+.+++....+..... ...+|......+.+.. ..+++.++..... .+.
T Consensus 29 ~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~-----~~~ 101 (352)
T PF02259_consen 29 PEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLVELEEIIELKSNLS-----QNP 101 (352)
T ss_pred hhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhc-----ccH
Confidence 466677777766 889999999888877642 2233333333333332 2333333331110 001
Q ss_pred HHHHHHHHHHhc-----cCCH---HHHHHHHHHhHHh-cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-C----C
Q 048117 82 VTFIGLLHACGH-----MGWV---DEGRRFFYSMTTE-YGIIPQIEHYGCMVDLLSRAGFLQEAYEFIRNMPI-K----P 147 (352)
Q Consensus 82 ~t~~~ll~a~~~-----~g~~---~~a~~~~~~m~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~----p 147 (352)
.....++..... ..++ +....+-..+... ........++..+...+.+.|.++.|...+..+.. . +
T Consensus 102 ~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~ 181 (352)
T PF02259_consen 102 QDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES 181 (352)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC
Confidence 111111111111 1122 2222211212210 01234457888999999999999999999988832 1 0
Q ss_pred -CcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048117 148 -NGVVWGALLGGCRVHKNIDLAEEASRQLDQ 177 (352)
Q Consensus 148 -~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 177 (352)
++...-.-....-..|+.++|...++...+
T Consensus 182 ~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 182 LLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444456667778898999988887765
No 475
>COG1775 HgdB Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism]
Probab=22.19 E-value=4.9e+02 Score=23.77 Aligned_cols=79 Identities=9% Similarity=-0.056 Sum_probs=52.9
Q ss_pred cCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH--HccCHHHHHHHHH
Q 048117 130 AGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYA--EAERWEDVARVRK 207 (352)
Q Consensus 130 ~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~ 207 (352)
.+.++.+.++++++.- ..+|.+.|-.++.+.....++..=+-.+....|...+....+..+.. -.++.+.....++
T Consensus 142 ~~~~~~~~e~lEe~~g--~~iT~e~L~da~~r~N~~rea~~k~~kL~~~~P~plsg~D~~~~~~~~~~~~d~d~~~~~l~ 219 (379)
T COG1775 142 HNELDKFKELLEELTG--NEITEEKLRDAIARYNRLREALAKLYKLAKHKPSPLSGSDAFNVMAFAVFLRDKDAFIEELE 219 (379)
T ss_pred HHHHHHHHHHHHHHhC--CcccHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHHHHhhHHHHhcchHHHHHHHH
Confidence 3567788888888831 46789999999998888877777666776666655544443333322 3556666666666
Q ss_pred HHH
Q 048117 208 LMR 210 (352)
Q Consensus 208 ~m~ 210 (352)
.|.
T Consensus 220 ~l~ 222 (379)
T COG1775 220 ELI 222 (379)
T ss_pred HHH
Confidence 654
No 476
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=22.19 E-value=1.4e+02 Score=24.82 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=34.6
Q ss_pred ChHhHHHHhCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048117 1 RVHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMIQGLAIHGQAKEALTSFNK 71 (352)
Q Consensus 1 ~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 71 (352)
|++..+...|+..++.+++.|++-|.+.+. ....+...|.+|......-++..-++.
T Consensus 145 EL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~--------------g~i~FD~FI~ccv~L~~lt~~Fr~~D~ 201 (221)
T KOG0037|consen 145 ELRQALTQLGYRLSPQFYNLLVRKYDRFGG--------------GRIDFDDFIQCCVVLQRLTEAFRRRDT 201 (221)
T ss_pred HHHHHHHHcCcCCCHHHHHHHHHHhccccC--------------CceeHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356667778888888888888888886642 123344445555555444444444433
No 477
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=22.16 E-value=5.2e+02 Score=24.07 Aligned_cols=99 Identities=16% Similarity=0.142 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HcCCCc-----cHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-
Q 048117 45 TVFTWSAMIQGLAIHGQAKEALTSFNKMI-------EIGIKP-----NGVTFIGLLHACGHMGWVDEGRRFFYSMTTEY- 111 (352)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~-------~~g~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~- 111 (352)
++.+--..+.++....+..+.++..+... +.|-.| .-.+...|+...+-.|++..|.++++.+.-..
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Confidence 66555556666666666655555544421 111222 12245566777777777777777766553210
Q ss_pred ----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 048117 112 ----GII-PQIEHYGCMVDLLSRAGFLQEAYEFIRNM 143 (352)
Q Consensus 112 ----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m 143 (352)
.+. ..+.+|--+.-+|.-.+++.+|.+.|...
T Consensus 154 ~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 154 GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 23556666666777778888888877766
No 478
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=22.05 E-value=6.8e+02 Score=24.70 Aligned_cols=134 Identities=13% Similarity=-0.007 Sum_probs=85.8
Q ss_pred CCccHHHHHHHHHHHhc--cCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHH-HhcCCHHHHHHHHHhC-CCCC--Ccc
Q 048117 77 IKPNGVTFIGLLHACGH--MGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLL-SRAGFLQEAYEFIRNM-PIKP--NGV 150 (352)
Q Consensus 77 ~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m-~~~p--~~~ 150 (352)
--|+..|.-.++.-... ....+-|-.++..|.. -+.|-....|. ...| .-.|+...|...+... ..+| .-+
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln~-aglywr~~gn~~~a~~cl~~a~~~~p~~~~v 643 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILNE-AGLYWRAVGNSTFAIACLQRALNLAPLQQDV 643 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEeec-ccceeeecCCcHHHHHHHHHHhccChhhhcc
Confidence 34666665554443332 2234556667776652 44444433332 2333 3468888888777665 2233 334
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 048117 151 VWGALLGGCRVHKNIDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNLG 213 (352)
Q Consensus 151 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 213 (352)
..-.|.....+.|....|..++..........+.++..+-++|....+++.|.+-|+...+..
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 455566667777777888888888777555556788889999999999999999998876543
No 479
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.80 E-value=7e+02 Score=24.00 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=15.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 048117 84 FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIP 115 (352)
Q Consensus 84 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~ 115 (352)
+..+++++ ..++.+.|..+++++... |..|
T Consensus 245 if~Li~al-~~~d~~~Al~~l~~Ll~~-G~~~ 274 (504)
T PRK14963 245 LRGIAAAL-AQGDAAEALSGAAQLYRD-GFAA 274 (504)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHc-CCCH
Confidence 33445554 335666666666666632 5443
No 480
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=21.67 E-value=4e+02 Score=24.62 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=15.9
Q ss_pred CCCcchHHHHHHHHHhcCCHH
Q 048117 146 KPNGVVWGALLGGCRVHKNID 166 (352)
Q Consensus 146 ~p~~~~~~~li~~~~~~g~~~ 166 (352)
.||+..|+++..+|+.-+-+.
T Consensus 234 aPnVlIwsAv~aS~a~p~~~~ 254 (391)
T cd07229 234 APNVLIWSAALASNASSAALY 254 (391)
T ss_pred CCCchHHHHHHHHcCCccccC
Confidence 488888999888887666443
No 481
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=21.31 E-value=2.4e+02 Score=23.14 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=45.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 048117 115 PQIEHYGCMVDLLSRAGFLQEAYEFIRNMPIKPNGVVWGALLGGCRVHKNIDLAEEASRQL 175 (352)
Q Consensus 115 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 175 (352)
+.+.+...++..|...|+.+..++++-.+. |+..-.+.++..|.++|-.+.-.-++.+.
T Consensus 20 lpp~v~k~lv~~y~~~~~~~~lE~lI~~LD--~~~LDidq~i~lC~~~~LydalIYv~n~~ 78 (196)
T PF12816_consen 20 LPPEVFKALVEHYASKGRLERLEQLILHLD--PSSLDIDQVIKLCKKHGLYDALIYVWNRA 78 (196)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHhCC--HHhcCHHHHHHHHHHCCCCCeeeeeeecc
Confidence 345788999999999999999999998885 44555677888899988777655555443
No 482
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.87 E-value=8e+02 Score=24.07 Aligned_cols=119 Identities=20% Similarity=0.205 Sum_probs=76.0
Q ss_pred cCCHHHHHHHHHHhHHhcC-------CCCChhhHHHHH---HHHHhcCCHHHHHHHHHh-------C---C---------
Q 048117 94 MGWVDEGRRFFYSMTTEYG-------IIPQIEHYGCMV---DLLSRAGFLQEAYEFIRN-------M---P--------- 144 (352)
Q Consensus 94 ~g~~~~a~~~~~~m~~~~g-------~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~-------m---~--------- 144 (352)
...++++...|...+..+. +..++.+..+|+ .++-..|+.+-|.+++.+ . .
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 3456777777766554221 112344555554 455667776665555433 3 1
Q ss_pred ---CCC-CcchHHH---HHHHHHhcCCHHHHHHHHHHHHhcCCC-CcchHHHHHHHH-HHccCHHHHHHHHHHHHhc
Q 048117 145 ---IKP-NGVVWGA---LLGGCRVHKNIDLAEEASRQLDQLDPL-NNGYHVVLSNIY-AEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 145 ---~~p-~~~~~~~---li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~-~~~g~~~~a~~~~~~m~~~ 212 (352)
..| |...|-+ -+..+.+.|-+..|.+..+.+.++.|. ++.....+|+.| .+..++.-..++++..+..
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 112 2222322 345567889999999999999999987 777778888888 5778888888888887543
No 483
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=20.80 E-value=5.9e+02 Score=22.53 Aligned_cols=124 Identities=7% Similarity=-0.003 Sum_probs=0.0
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC-------hhhHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCcchH
Q 048117 87 LLHACGHMGWVDEGRRFFYSMTTEYGIIPQ-------IEHYGCMVDLLSRAGFLQEAYEFIRNM-------PIKPNGVVW 152 (352)
Q Consensus 87 ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~ 152 (352)
+.+-..+..++++|...+.++..+ |+..| ..+..-+-..|.+.|+...-.+..... .....+...
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~k-g~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGK-GVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcC-CCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCcchHHH------HHHHHHHccCHHHHHHHHHHHHh
Q 048117 153 GALLGGCRVHKNI-DLAEEASRQLDQLDPLNNGYHVV------LSNIYAEAERWEDVARVRKLMRN 211 (352)
Q Consensus 153 ~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~------l~~~~~~~g~~~~a~~~~~~m~~ 211 (352)
.++|.-+-...+- +.-..+.....+........+.- ++..+.+.|.+.+|..+...+..
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
No 484
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.65 E-value=7.3e+02 Score=24.66 Aligned_cols=78 Identities=10% Similarity=0.082 Sum_probs=0.0
Q ss_pred hHhHHHHhCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhcccC-----------------CHHHHHHHHHHHHHcCCHHH
Q 048117 2 VHEYSNQSGFRRNIRVCNTLIDMYVKCGCLEGARRVFIEMEER-----------------TVFTWSAMIQGLAIHGQAKE 64 (352)
Q Consensus 2 i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----------------~~~~~~~li~~~~~~g~~~~ 64 (352)
+-..+.+.|+..+......|+. .-.|++..|..++++...- +......++.++.. |+...
T Consensus 192 L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~-~d~~~ 268 (618)
T PRK14951 192 LTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ-GDGRT 268 (618)
T ss_pred HHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc-CCHHH
Q ss_pred HHHHHHHHHHcCCCccHH
Q 048117 65 ALTSFNKMIEIGIKPNGV 82 (352)
Q Consensus 65 A~~l~~~m~~~g~~p~~~ 82 (352)
++.++++|.+.|..|...
T Consensus 269 al~~l~~l~~~G~~~~~i 286 (618)
T PRK14951 269 VVETADELRLNGLSAAST 286 (618)
T ss_pred HHHHHHHHHHcCCCHHHH
No 485
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=20.54 E-value=2.5e+02 Score=18.04 Aligned_cols=14 Identities=21% Similarity=0.264 Sum_probs=5.3
Q ss_pred cCCHHHHHHHHHHH
Q 048117 59 HGQAKEALTSFNKM 72 (352)
Q Consensus 59 ~g~~~~A~~l~~~m 72 (352)
.|++-+|-++++++
T Consensus 12 ~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 12 AGDFFEAHEVLEEL 25 (62)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred CCCHHHhHHHHHHH
Confidence 33444444444443
No 486
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=20.49 E-value=7.9e+02 Score=23.83 Aligned_cols=164 Identities=11% Similarity=0.054 Sum_probs=112.7
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 048117 13 RNIRVCNTLIDMYVKCGCLEGARRVFIEMEE--RTVFTWSAMIQGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHA 90 (352)
Q Consensus 13 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 90 (352)
.|-.-.-++++.++..-.+.-.+.+..+|.. .+-..|-.++..|.++ ..+.-..+++++.+.. -|.+.+.--+.-
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHH
Confidence 3555566778888887777777788777764 4667888999999998 5678889999888754 456666655555
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCC------hhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCcchHHHHHHHHH
Q 048117 91 CGHMGWVDEGRRFFYSMTTEYGIIPQ------IEHYGCMVDLLSRAGFLQEAYEFIRNM----PIKPNGVVWGALLGGCR 160 (352)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~li~~~~ 160 (352)
+-..++.+.+...|....- .+.|. ..+|.-|+..- ..+.|..+++...+ +...-.+.+.-+-.-|.
T Consensus 141 ~yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 5566888888888877763 33331 23566665432 34566666666655 43344556666667788
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCc
Q 048117 161 VHKNIDLAEEASRQLDQLDPLNN 183 (352)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~ 183 (352)
...++.+|.+++..+.+.+..+.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~ 239 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDV 239 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhh
Confidence 88899999999987776554443
No 487
>PRK10941 hypothetical protein; Provisional
Probab=20.44 E-value=5.7e+02 Score=22.20 Aligned_cols=76 Identities=11% Similarity=-0.055 Sum_probs=48.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHH----HhCCCCCCcchHHHHHHH
Q 048117 84 FIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQ-IEHYGCMVDLLSRAGFLQEAYEFI----RNMPIKPNGVVWGALLGG 158 (352)
Q Consensus 84 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~p~~~~~~~li~~ 158 (352)
.+.+-.+|.+.++++.|.++.+.+.. +.|+ ..-+.--.-.|.+.|.+..|..=+ +..+..|+.......+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~---l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ---FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 34566778888888888888887773 3444 344444555578888888875533 344656666666666665
Q ss_pred HHhc
Q 048117 159 CRVH 162 (352)
Q Consensus 159 ~~~~ 162 (352)
..+.
T Consensus 261 l~~~ 264 (269)
T PRK10941 261 IEQK 264 (269)
T ss_pred Hhhc
Confidence 5443
No 488
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=20.39 E-value=4.9e+02 Score=24.11 Aligned_cols=132 Identities=12% Similarity=0.007 Sum_probs=72.2
Q ss_pred hHhHHHHhCCCCCHhH---HHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHH--H--HHHHcCCHHHHHHHHHHHHH
Q 048117 2 VHEYSNQSGFRRNIRV---CNTLIDMYVKCGCLEGARRVFIEMEERTVFTWSAMI--Q--GLAIHGQAKEALTSFNKMIE 74 (352)
Q Consensus 2 i~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li--~--~~~~~g~~~~A~~l~~~m~~ 74 (352)
+...+.+.|+.|+..+ ..+++.++.-.+..++-.+++.... .|...+...- . .+...+........++...+
T Consensus 101 v~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~l~ 179 (391)
T cd07229 101 VVKALWLRGLLPRIITGTATGALIAALVGVHTDEELLRFLDGDG-IDLSAFNRLRGKKSLGYSGYGWLGTLGRRIQRLLR 179 (391)
T ss_pred HHHHHHHcCCCCceEEEecHHHHHHHHHHcCCHHHHHHHHhccc-hhhhhhhhhccccccccccccccchHHHHHHHHHc
Confidence 3456788999998755 4467777777777777777776421 1111111100 0 01111122233344455556
Q ss_pred cCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHH---------------hcCCCCChhhHHHHHHHHHhcCCHH
Q 048117 75 IGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTT---------------EYGIIPQIEHYGCMVDLLSRAGFLQ 134 (352)
Q Consensus 75 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~---------------~~g~~~~~~~~~~li~~~~~~g~~~ 134 (352)
.|.-.|...+...+..+...-.+++|.+--..... .+--.||+..|.++...++--|-+.
T Consensus 180 ~G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIwsAv~aS~a~p~~~~ 254 (391)
T cd07229 180 EGYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIWSAALASNASSAALY 254 (391)
T ss_pred CCCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHHHHHHHHcCCccccC
Confidence 67667777776666665555555655432111100 1223588888998887777666554
No 489
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=20.36 E-value=8.5e+02 Score=24.14 Aligned_cols=90 Identities=16% Similarity=0.122 Sum_probs=45.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHh---c
Q 048117 54 QGLAIHGQAKEALTSFNKMIEIGIKPNGVTFIGLLHACGHMGWVDEGRRFFYSMTTEYGIIPQIEHYGCMVDLLSR---A 130 (352)
Q Consensus 54 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~---~ 130 (352)
..+.-.|+++.|++.+-+ ..+...|.+.+...+.-|.-.+-.+... ..+.....-.|...-+..||..|++ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 455668899999998887 3445677888777666655443333222 2222111111122568889999986 4
Q ss_pred CCHHHHHHHHHhCCCCCC
Q 048117 131 GFLQEAYEFIRNMPIKPN 148 (352)
Q Consensus 131 g~~~~A~~~~~~m~~~p~ 148 (352)
.+..+|++.|--+....+
T Consensus 341 td~~~Al~Y~~li~~~~~ 358 (613)
T PF04097_consen 341 TDPREALQYLYLICLFKD 358 (613)
T ss_dssp T-HHHHHHHHHGGGGS-S
T ss_pred cCHHHHHHHHHHHHHcCC
Confidence 578889999888843333
No 490
>PF04631 Baculo_44: Baculovirus hypothetical protein; InterPro: IPR006725 This family includes several hypothetical baculoviral proteins, with predicted molecular weights of approximately 44 kDa.
Probab=20.34 E-value=46 Score=29.79 Aligned_cols=19 Identities=47% Similarity=1.094 Sum_probs=14.1
Q ss_pred EEecCCccccccCccccCCCC
Q 048117 331 VVRDRNRFHCFQAGSCSCGDY 351 (352)
Q Consensus 331 ~~~d~~~~~~~~~g~c~c~~~ 351 (352)
+.+|.+- .|+.|.|-|+|+
T Consensus 253 ~h~dvrp--~Fe~G~CdCGd~ 271 (371)
T PF04631_consen 253 VHRDVRP--NFETGECDCGDF 271 (371)
T ss_pred cCCCccc--ccccceecCCCC
Confidence 3445443 789999999997
No 491
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=20.12 E-value=2.6e+02 Score=18.04 Aligned_cols=60 Identities=18% Similarity=0.128 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 048117 153 GALLGGCRVHKN--IDLAEEASRQLDQLDPLNNGYHVVLSNIYAEAERWEDVARVRKLMRNL 212 (352)
Q Consensus 153 ~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 212 (352)
..+|....+..+ .+++..+++.+.+...++...-..|+....+--..++.....+-|++.
T Consensus 3 ~~~l~~l~~g~~Ls~~e~~~~~~~i~~g~~s~~qiaAfL~al~~kget~~Eiag~~~am~~~ 64 (66)
T PF02885_consen 3 KEILKKLRDGEDLSREEAKAAFDAILDGEVSDAQIAAFLMALRMKGETPEEIAGFAKAMREH 64 (66)
T ss_dssp HHHHHHHHTT----HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH---HHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHh
Confidence 344554444444 367777777777655444444444444445555556665566666554
No 492
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=20.03 E-value=1e+02 Score=19.97 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=8.4
Q ss_pred CCHHHHHHHHHHHHH
Q 048117 60 GQAKEALTSFNKMIE 74 (352)
Q Consensus 60 g~~~~A~~l~~~m~~ 74 (352)
-+++.|+..|.+++.
T Consensus 39 Wd~~~Al~~F~~lk~ 53 (63)
T smart00804 39 WDYERALKNFTELKS 53 (63)
T ss_pred CCHHHHHHHHHHHHh
Confidence 355556666655554
Done!